bluuebunny/crossref_metadata_2025_split huggingface dataset:
Non-invasive in vivo hyperspectral imaging of the retina for potential biomarker use in Alzheimer’s disease
Authors: Hadoux Xavier , Hui Flora , Lim Jeremiah K. H. , Masters Colin L. , Pébay Alice , Chevalier Sophie , Ha Jason , Loi Samantha , Fowler Christopher J. , Rowe Christopher , Villemagne Victor L. , Taylor Edward N. , Fluke Christopher , Soucy Jean-Paul , Lesage Frédéric , Sylvestre Jean-Philippe , Rosa-Neto Pedro , Mathotaarachchi Sulantha , Gauthier Serge , Nasreddine Ziad S. , Arbour Jean Daniel , Rhéaume Marc-André , Beaulieu Sylvain , Dirani Mohamed , Nguyen Christine T. O. , Bui Bang V. , Williamson Robert , Crowston Jonathan G. , van Wijngaarden Peter 
Published: September 2019

AbstractStudies of rodent models of Alzheimer’s disease (AD) and of human tissues suggest that the retinal changes that occur in AD, including the accumulation of amyloid beta (Aβ), may serve as surrogate markers of brain Aβ levels. As Aβ has a wavelength-dependent effect on light scatter, we investigate the potential for in vivo retinal hyperspectral imaging to serve as a biomarker of brain Aβ. Significant differences in the retinal reflectance spectra are found between individuals with high Aβ burden on brain PET imaging and mild cognitive impairment (n = 15), and age-matched PET-negative controls (n = 20). Retinal imaging scores are correlated with brain Aβ loads. The findings are validated in an independent cohort, using a second hyperspectral camera. A similar spectral difference is found between control and 5xFAD transgenic mice that accumulate Aβ in the brain and retina. These findings indicate that retinal hyperspectral imaging may predict brain Aβ load.
A building-block design for enhanced visible-light switching of diarylethenes
Authors: Zhang Zhiwei , Wang Wenhui , Jin Peipei , Xue Jiadan , Sun Lu , Huang Jinhai , Zhang Junji , Tian He 
Published: September 2019

AbstractCurrent development of light-responsive materials and technologies imposes an urgent demand on visible-light photoswitching on account of its mild excitation with high penetration ability and low photo-toxicity. However, complicated molecular design and laborious synthesis are often required for visible-light photoswitch, especially for diarylethenes. Worse still, a dilemma is encountered as the visible-light excitation of the diarylethene is often achieved at the expense of photochromic performances. To tackle these setbacks, we introduce a building-block design strategy to achieve all-visible-light photochromism with the triplet-sensitization mechanism. The simply designed diarylethene system is constructed by employing a sensitizer building-block with narrow singlet-triplet energy gap (ΔEST) to a diarylethene building-block. A significant improvement on the photochromic efficiency is obtained as well as an enhanced photo-fatigue resistance over those under UV irradiation. The balance between the visible-light excitation and decent photochromism is thus realized, promoting a guiding principle for the visible-light photochromism.
Exercise training counteracts urothelial carcinoma-induced alterations in skeletal muscle mitochondria phospholipidome in an animal model
Authors: Montero-Bullon Javier-Fernando , Melo Tânia , Ferreira Rita , Padrão Ana Isabel , Oliveira Paula A. , Domingues M. Rosário M. , Domingues Pedro 
Published: September 2019

AbstractCancer associated body wasting is the cause of physical disability, reduced tolerance to anticancer therapy and reduced survival of cancer patients and, similarly to cancer, its incidence is increasing. There is no cure for this clinical condition, and the pathophysiological process involved is largely unknown. Exercise training appears as the gold standard non-pharmacological therapy for the management of this wasting syndrome. Herein we used a lipidomics approach based on liquid chromatography coupled with high-resolution mass spectrometry (LC-HR-MS) to study the effect of exercise in the modulation of phospholipids profile of mitochondria isolated from gastrocnemius muscle of a pre-clinical model of urothelial carcinoma-related body wasting (BBN induced), submitted to 13 weeks of treadmill exercise after diagnosis. Multivariate analysis showed a close relationship between the BBN exercise group and both control groups (control sedentary and control exercise), while the BBN sedentary group was significantly separated from the control groups and the BBN exercise group. Univariate statistical analysis revealed differences mainly in phosphatidylserine (PS) and cardiolipin (CL), although some differences were also observed in phosphatidylinositol (PI, LPI) and phosphatidylcholine (PC) phospholipids. PS with shorter fatty acyl chains were up-regulated in the BBN sedentary group, while the other species of PS with longer FA and a higher degree of unsaturation were down-regulated, but the BBN exercise group was mostly similar to control groups. Remarkably, exercise training prevented these alterations and had a positive impact on the ability of mitochondria to produce ATP, restoring the healthy phospholipid profile. The remodelling of mitochondria phospholipid profile in rats with urothelial carcinoma allowed confirming the importance of the lipid metabolism in mitochondria dysfunction in cancer-induced skeletal muscle remodelling. The regulation of phospholipid biosynthetic pathways observed in the BBN exercise group supported the current perspective that exercise is an adequate therapeutic approach for the management of cancer-related muscle remodeling.
Anodic Titanium Dioxide Nanotubes for Magnetically Guided Therapeutic Delivery
Authors: Hasanzadeh Kafshgari Morteza , Kah Delf , Mazare Anca , Nguyen Nhat Truong , Distaso Monica , Peukert Wolfgang , Goldmann Wolfgang H. , Schmuki Patrik , Fabry Ben 
Published: September 2019

AbstractHollow titanium dioxide (TiO2) nanotubes offer substantially higher drug loading capacity and slower drug release kinetics compared to solid drug nanocarriers of comparable size. In this report, we load TiO2 nanotubes with iron oxide nanoparticles to facilitate site-specific magnetic guidance and drug delivery. We generate magnetic TiO2 nanotubes (TiO2NTs) by incorporating a ferrofluid containing Ø ≈ 10 nm iron oxide nanoparticles in planar sheets of weakly connected TiO2 nanotubes. After thermal annealing, the magnetic tubular arrays are loaded with therapeutic drugs and then sonicated to separate the nanotubes. We demonstrate that magnetic TiO2NTs are non-toxic for HeLa cells at therapeutic concentrations (≤200 µg/mL). Adhesion and endocytosis of magnetic nanotubes to a layer of HeLa cells are increased in the presence of a magnetic gradient field. As a proof-of-concept, we load the nanotubes with the topoisomerase inhibitor camptothecin and achieve a 90% killing efficiency. We also load the nanotubes with oligonucleotides for cell transfection and achieve 100% cellular uptake efficiency. Our results demonstrate the potential of magnetic TiO2NTs for a wide range of biomedical applications, including site-specific delivery of therapeutic drugs.
Horizontal and vertical integrative analysis methods for mental disorders omics data
Authors: Wang Shuaichao , Shi Xingjie , Wu Mengyun , Ma Shuangge 
Published: September 2019

AbstractIn recent biomedical studies, omics profiling has been extensively conducted on various types of mental disorders. In most of the existing analyses, a single type of mental disorder and a single type of omics measurement are analyzed. In the study of other complex diseases, integrative analysis, both vertical and horizontal integration, has been conducted and shown to bring significantly new insights into disease etiology, progression, biomarkers, and treatment. In this article, we showcase the applicability of integrative analysis to mental disorders. In particular, the horizontal integration of bipolar disorder and schizophrenia and the vertical integration of gene expression and copy number variation data are conducted. The analysis is based on the sparse principal component analysis, penalization, and other advanced statistical techniques. In data analysis, integration leads to biologically sensible findings, including the disease-related gene expressions, copy number variations, and their associations, which differ from the “benchmark” analysis. Overall, this study suggests the potential of integrative analysis in mental disorder research.
Controlling Obesity and Metabolic Diseases by Hydrodynamic Delivery of a Fusion Gene of Exendin-4 and α1 Antitrypsin
Authors: Gao Mingming , Liu Dexi 
Published: September 2019

AbstractObesity and associated metabolic comorbidities represent a growing public health problem. In this study, we demonstrate the use of a newly created fusion gene of exendin-4 and α1-antitrypsin to control obesity and obesity-associated metabolic disorders including insulin resistance, fatty liver and hyperglycemia. The fusion gene encodes a protein with exendin-4 peptide placed at the N-terminus of human α-1 antitrypsin, and is named EAT. Hydrodynamic transfer of the EAT gene to mice prevents high-fat diet-induced obesity, insulin resistance and fatty liver development. In diet-induced obese mice, expression of EAT gene induces weight loss, improves glucose homeostasis, and attenuates hepatic steatosis. In ob/ob mice, EAT gene transfer suppresses body weight gain, maintains metabolic homeostasis, and completely blocks fatty liver development. Six-month overexpression of the EAT fusion gene in healthy mice does not lead to any detectable toxicity. Mechanistic study reveals that the resulting metabolic benefits are achieved by a reduced food take and down-regulation of transcription of pivotal genes responsible for lipogenesis and lipid droplet formation in the liver and chronic inflammation in visceral fat. These results validate the feasibility of gene therapy in preventing and restoring metabolic homeostasis under diverse pathologic conditions, and provide evidence in support of a new strategy to control obesity and related metabolic diseases.
Identification and characterization of SEC24D as a susceptibility gene for hepatitis B virus infection
Authors: Jiang Xianzhong , Zhang Bin , Zhao Junsheng , Xu Yi , Han Haijun , Su Kunkai , Tao Jingjing , Fan Rongli , Zhao Xinyi , Li Lanjuan , Li Ming D. 
Published: September 2019

AbstractSingle nucleotide polymorphisms (SNPs) and genes associated with susceptibility to hepatitis B virus (HBV) infection that have been identified by genome-wide association studies explain only a limited portion of the known heritability, indicating more genetic variants remain to be discovered. In this study, we adopted a new research strategy to identify more susceptibility genes and variants for HBV infection. We first performed genetic association analysis of 300 sib-pairs and 3,087 case-control samples, which revealed that 36 SNPs located in 31 genes showed nominal associations with HBV infection in both samples. Of these genes, we selected SEC24D for further molecular analysis according to the following two main lines of evidence. First, a time course analysis of the expression profiles from HBV-infected primary human hepatocytes (PHH) demonstrated that SEC24D expression increased markedly as time passed after HBV infection (P = 4.0 × 10−4). Second, SNP rs76459466 in SEC24D was adversely associated with HBV risk (ORmeta = 0.82; Pmeta = 0.002), which again indicated that SEC24D represents a novel susceptibility gene for HBV infection. Moreover, SEC24D appeared to be protective against HBV infection in vitro. Consistently, we found that SEC24D expression was significantly enhanced in non-infected liver tissues (P = 0.002). We conclude that SEC24D is a novel candidate gene linked to susceptibility to HBV infection.
Photolysis of dimethoxynitrobenzyl-“caged” acids yields fluorescent products
Authors: Vorob’ev Aleksey Yu. , Dranova Tatyana Yu. , Moskalensky Alexander E. 
Published: September 2019

AbstractCarboxylic acids conjugated with 4,5-dimethoxy-2-nitrobenzyl photoremovable protecting group are well known and widely used for biological studies. In this paper, we study the photolysis of likewise “caged” acetic, caprylic and arachidonic acids. Unexpectedly, we observed huge growth of fluorescence emission at ~430 nm during photolysis. Following further UV irradiation, a product with fluorescence at longer wavelength was formed (470 nm excitation / ~500–600 nm emission). While it may be used to monitor the “uncaging”, these fluorescent products may interfere with widespread dyes such as fluorescein in biomedical experiments. This effect might be negligible if the photolysis products dissolve in the medium. On the other hand, we observed that arachidonic and caprylic acids derivatives self-organize in emulsion droplets in water environment due to long lipophilic chains. Illumination of droplets by UV rapidly induces orange fluorescence excited by 488 nm light. This fluorescence turn-on was fast (~0.1 s) and apparently caused by the accumulation of water-insoluble fluorescent residuals inside droplets. These self-organized lipophilic structures with fluorescence turn-on capability may be of interest for biomedical and other application. We have identified and hypothesized some compounds which may be responsible for the observed fluorescense.
Atomic-scale viscoplasticity mechanisms revealed in high ductility metallic glass films
Authors: Idrissi Hosni , Ghidelli Matteo , Béché Armand , Turner Stuart , Gravier Sébastien , Blandin Jean-Jacques , Raskin Jean-Pierre , Schryvers Dominique , Pardoen Thomas 
Published: September 2019

AbstractThe fundamental plasticity mechanisms in thin freestanding Zr65Ni35 metallic glass films are investigated in order to unravel the origin of an outstanding strength/ductility balance. The deformation process is homogenous until fracture with no evidence of catastrophic shear banding. The creep/relaxation behaviour of the films was characterized by on-chip tensile testing, revealing an activation volume in the range 100–200 Å3. Advanced high-resolution transmission electron microscopy imaging and spectroscopy exhibit a very fine glassy nanostructure with well-defined dense Ni-rich clusters embedded in Zr-rich clusters of lower atomic density and a ~2–3 nm characteristic length scale. Nanobeam electron diffraction analysis reveals that the accumulation of plastic deformation at room-temperature correlates with monotonously increasing disruption of the local atomic order. These results provide experimental evidences of the dynamics of shear transformation zones activation in metallic glasses. The impact of the nanoscale structural heterogeneities on the mechanical properties including the rate dependent behaviour is discussed, shedding new light on the governing plasticity mechanisms in metallic glasses with initially heterogeneous atomic arrangement.
Low-frequency perfect sound absorption achieved by a modulus-near-zero metamaterial
Authors: Shao Chen , Long Houyou , Cheng Ying , Liu Xiaojun 
Published: September 2019

AbstractWe have analytically proposed a mechanism for achieving a perfect absorber by a modulus-near-zero (MNZ) metamaterial with a properly decorated imaginary part, in which the perfect absorption (PA) is derived from the proved destructive interference. Based on the analysis, an ultrathin acoustic metamaterial supporting monopolar resonance at 157 Hz (with a wavelength about 28 times of the metamaterial thickness) has been devised to construct an absorber for low-frequency sound. The imaginary part of its effective modulus can be easily tuned by attentively controlling the dissipative loss to achieve PA. Moreover, we have also conducted the experimental measurement in impedance tube, and the result is of great consistency with that of analytical and simulated ones. Our work provides a feasible approach to realize PA (>99%) at low frequency with a deep-wavelength dimension which may promote acoustic metamaterials to practical engineering applications in noise control.
Surface plasmon resonance immunosensor for label-free detection of BIRC5 biomarker in spontaneously occurring canine mammary tumours
Authors: Jena Subas Chandra , Shrivastava Sameer , Saxena Sonal , Kumar Naveen , Maiti Swapan Kumar , Mishra Bishnu Prasad , Singh Raj Kumar 
Published: September 2019

AbstractWe report detection of Baculoviral inhibitor of apoptosis repeat containing-5 (BIRC5) protein biomarker in dog serum by label-free surface plasmon resonance (SPR) immunosensor. Initially, overexpression of BIRC5 in canine mammary tumour (CMT) tissues was confirmed by real-time PCR. Recombinant BIRC5 was produced and protein specific antibodies developed in guinea pig specifically reacted with native protein in immunohistochemistry and immunocytochemistry. SPR immunosensor was developed by fabricating anti-BIRC5 antibodies on gold sensor disc. The equilibrium dissociation constant, (KD = kd/ka) was 12.1 × 10−12 M; which indicates that antibodies are of high affinity with sensitivity in picomolar range. The SPR assay could detect as low as 6.25 pg/ml of BIRC5 protein in a calibration experiment (r2 = 0.9964). On testing real clinical samples, 95% specificity and 73.33% sensitivity were recorded. The average amount of serum BIRC5 in dogs with CMT was 110.02 ± 9.77 pg/ml; whereas, in non-cancerous disease conditions, 44.79 ± 4.28 pg/ml and in healthy dog sera 30.28 ± 2.99 pg/ml protein was detected. The SPR immunosensor for detection of BIRC5 in dog sera is reported for the first time and this may find prognostic and diagnostic applications in management of CMT. In future, ‘on-site’ sensors can be developed using this technique for near-patient testing.
A Band-Pass Filter Based on Half-Mode Substrate Integrated Waveguide and Spoof Surface Plasmon Polaritons
Authors: Zhao Lei , Li Yuan , Chen Zhao-Min , Liang Xin-Hua , Wang Jun , Shen Xiaopeng , Zhang Qingfeng 
Published: September 2019

AbstractIn this paper, a band-pass filter based on half-mode substrate integrated waveguide (HMSIW) and double-layer spoof surface plasmon polaritons (SSPPs) consisting of two corrugated metal strips is proposed, which can realize band-pass transmission by etching periodic grooves at the top and bottom metal layers of the HMSIW. Moreover, the influences of important parameters on the performance of the proposed band-pass filter are analyzed by parametric study. By changing the key parameters, the low and high cut-off frequency can be controlled independently. The corresponding equivalent circuit of the proposed band-pass filter is put forward to explain the physical mechanism. Compared with the previous structures, this structure features smaller size, wider bandwidth and lower loss. Simulated results show that the proposed band-pass filter achieves a bandwidth (for |S11| < −10 dB and |S21| > −0.8 dB) of about 69.77% (15.6–32.1 GHz). The measured results have good agreements with the simulated ones, which verify that the proposed band-pass filter has good performances and potential applications at the microwave frequencies.
Calcium-induced dissociation of CIB1 from ASK1 regulates agonist-induced activation of the p38 MAPK pathway in platelets
Authors: Patel Pravin , Naik Meghna U. , Golla Kalyan , Shaik Noor F. , Naik Ulhas P. 
Published: September 2019

Abstract
Apoptosis signal-regulating kinase 1 (ASK1) is a mitogen-activated protein kinase kinase kinase (MAPKKK) that regulates activation of the c-Jun N-terminal kinase (JNK)- and p38-stress response pathways leading to apoptosis in nucleated cells. We have previously shown that ASK1 is expressed in platelets and regulates agonist-induced platelet activation and thrombosis. However, the mechanism by which platelet agonists cause activation of ASK1 is unknown. Here, we show that in platelets agonist-induced activation of p38 is exclusively dependent on ASK1. Both thrombin and collagen were able to activate ASK1/p38. Activation of ASK1/p38 was strongly dependent on thromboxane A2 (TxA2) and ADP. Agonist-induced ASK1 activation is blocked by inhibition of phospholipase C (PLC) β/γ activity or by chelating intracellular Ca2+. Furthermore, treatment of platelets with thapsigargin or Ca2+ ionophore robustly induced ASK1/p38 activation. In addition, calcium and integrin-binding protein 1 (CIB1), a Ca2+-dependent negative regulator of ASK1, associates with ASK1 in resting platelets and is dissociated upon platelet activation by thrombin. Dissociation of CIB1 corresponds with ASK1 binding to tumor necrosis factor (TNF) receptor associated factor 6 (TRAF6) and the autophosphorylation of ASK1 Thr838 within the catalytic domain results in full activation of ASK1. Furthermore, genetic ablation of Cib1 in mice augments agonist-induced Ask1/p38 activation. Together our results suggest that in resting platelets ASK1 is bound to CIB1 at low Ca2+ concentrations. Agonist-induced platelet activation causes an increase in intracellular Ca2+ concentration that leads to the dissociation of CIB1 from ASK1, allowing for proper dimerization through ASK1 N-terminal coiled-coil (NCC) domains.
Parallelized and Vectorized Tracking Using Kalman Filters with CMS Detector Geometry and Events
Authors: Cerati Giuseppe , Elmer Peter , Gravelle Brian , Kortelainen Matti , Krutelyov Vyacheslav , Lantz Steven , Lefebvre Matthieu , Masciovecchio Mario , McDermott Kevin , Norris Boyana , Reinsvold Hall Allison , Riley Daniel , Tadel Matevž , Wittich Peter , Würthwein Frank , Yagil Avi 
Published: September 2019

The High-Luminosity Large Hadron Collider at CERN will be characterized by greater pileup of events and higher occupancy, making the track reconstruction even more computationally demanding. Existing algorithms at the LHC are based on Kalman filter techniques with proven excellent physics performance under a variety of conditions. Starting in 2014, we have been developing Kalman-filter-based methods for track finding and fitting adapted for many-core SIMD processors that are becoming dominant in high-performance systems.
This paper summarizes the latest extensions to our software that allow it to run on the realistic CMS-2017 tracker geometry using CMSSW-generated events, including pileup. The reconstructed tracks can be validated against either the CMSSW simulation that generated the detector hits, or the CMSSW reconstruction of the tracks. In general, the code’s computational performance has continued to improve while the above capabilities were being added. We demonstrate that the present Kalman filter implementation is able to reconstruct events with comparable physics performance to CMSSW, while providing generally better computational performance. Further plans for advancing the software are discussed.