bluuebunny/crossref_metadata_2025_split huggingface dataset:
circTP63 functions as a ceRNA to promote lung squamous cell carcinoma progression by upregulating FOXM1
Authors: Cheng Zhuoan , Yu Chengtao , Cui Shaohua , Wang Hui , Jin Haojie , Wang Cun , Li Botai , Qin Meilin , Yang Chen , He Jia , Zuo Qiaozhu , Wang Siying , Liu Jun , Ye Weidong , Lv Yuanyuan , Zhao Fangyu , Yao Ming , Jiang Liyan , Qin Wenxin 
Published: July 2019

AbstractCircular RNAs (circRNAs) are identified as vital regulators in a variety of cancers. However, the role of circRNA in lung squamous cell carcinoma (LUSC) remains largely unknown. Herein, we explore the expression profiles of circRNA and mRNA in 5 paired samples of LUSC. By analyzing the co-expression network of differentially expressed circRNAs and dysregulated mRNAs, we identify that a cell cycle-related circRNA, circTP63, is upregulated in LUSC tissues and its upregulation is correlated with larger tumor size and higher TNM stage in LUSC patients. Elevated circTP63 promotes cell proliferation both in vitro and in vivo. Mechanistically, circTP63 shares miRNA response elements with FOXM1. circTP63 competitively binds to miR-873-3p and prevents miR-873-3p to decrease the level of FOXM1, which upregulates CENPA and CENPB, and finally facilitates cell cycle progression.
Activation of NIX-mediated mitophagy by an interferon regulatory factor homologue of human herpesvirus
Authors: Vo Mai Tram , Smith Barbara J. , Nicholas John , Choi Young Bong 
Published: July 2019

AbstractViral control of mitochondrial quality and content has emerged as an important mechanism for counteracting the host response to virus infection. Despite the knowledge of this crucial function of some viruses, little is known about how herpesviruses regulate mitochondrial homeostasis during infection. Human herpesvirus 8 (HHV-8) is an oncogenic virus causally related to AIDS-associated malignancies. Here, we show that HHV-8-encoded viral interferon regulatory factor 1 (vIRF-1) promotes mitochondrial clearance by activating mitophagy to support virus replication. Genetic interference with vIRF-1 expression or targeting to the mitochondria inhibits HHV-8 replication-induced mitophagy and leads to an accumulation of mitochondria. Moreover, vIRF-1 binds directly to a mitophagy receptor, NIX, on the mitochondria and activates NIX-mediated mitophagy to promote mitochondrial clearance. Genetic and pharmacological interruption of vIRF-1/NIX-activated mitophagy inhibits HHV-8 productive replication. Our findings uncover an essential role of vIRF-1 in mitophagy activation and promotion of HHV-8 lytic replication via this mechanism.
Evidence for the weakly coupled electron mechanism in an Anderson-Blount polar metal
Authors: Laurita N. J. , Ron A. , Shan Jun-Yi , Puggioni D. , Koocher N. Z. , Yamaura K. , Shi Y. , Rondinelli J. M. , Hsieh D. 
Published: July 2019

AbstractOver 50 years ago, Anderson and Blount proposed that ferroelectric-like structural phase transitions may occur in metals, despite the expected screening of the Coulomb interactions that often drive polar transitions. Recently, theoretical treatments have suggested that such transitions require the itinerant electrons be decoupled from the soft transverse optical phonons responsible for polar order. However, this decoupled electron mechanism (DEM) has yet to be experimentally observed. Here we utilize ultrafast spectroscopy to uncover evidence of the DEM in LiOsO3, the first known band metal to undergo a thermally driven polar phase transition (Tc ≈ 140 K). We demonstrate that intra-band photo-carriers relax by selectively coupling to only a subset of the phonon spectrum, leaving as much as 60% of the lattice heat capacity decoupled. This decoupled heat capacity is shown to be consistent with a previously undetected and partially displacive TO polar mode, indicating the DEM in LiOsO3.
Structural and functional analyses of hepatitis B virus X protein BH3-like domain and Bcl-xL interaction
Authors: Zhang Tian-Ying , Chen Hong-Ying , Cao Jia-Li , Xiong Hua-Long , Mo Xiao-Bing , Li Tian-Liang , Kang Xiao-Zhen , Zhao Jing-Hua , Yin Bo , Zhao Xiang , Huang Cheng-Hao , Yuan Quan , Xue Ding , Xia Ning-Shao , Yuan Y. Adam 
Published: July 2019

AbstractHepatitis B virus (HBV) X protein, HBx, interacts with anti-apoptotic Bcl-2 and Bcl-xL proteins through its BH3-like motif to promote HBV replication and cytotoxicity. Here we report the crystal structure of HBx BH3-like motif in complex with Bcl-xL where the BH3-like motif adopts a short α-helix to snuggle into a hydrophobic pocket in Bcl-xL via its noncanonical Trp120 residue and conserved Leu123 residue. This binding pocket is ~2 Å away from the canonical BH3-only binding pocket in structures of Bcl-xL with proapoptotic BH3-only proteins. Mutations altering Trp120 and Leu123 in HBx impair its binding to Bcl-xL in vitro and HBV replication in vivo, confirming the importance of this motif to HBV. A HBx BH3-like peptide, HBx-aa113-135, restores HBV replication from a HBx-null HBV replicon, while a shorter peptide, HBx-aa118-127, inhibits HBV replication. These results provide crucial structural and functional insights into drug designs for inhibiting HBV replication and treating HBV patients.
Probing the impact of sulfur/selenium/carbon linkages on prodrug nanoassemblies for cancer therapy
Authors: Sun Bingjun , Luo Cong , Zhang Xuanbo , Guo Mengran , Sun Mengchi , Yu Han , Chen Qin , Yang Wenqian , Wang Menglin , Zuo Shiyi , Chen Pengyu , Kan Qiming , Zhang Haotian , Wang Yongjun , He Zhonggui , Sun Jin 
Published: July 2019

AbstractTumor cells are characterized as redox-heterogeneous intracellular microenvironment due to the simultaneous overproduction of reactive oxygen species and glutathione. Rational design of redox-responsive drug delivery systems is a promising prospect for efficient cancer therapy. Herein, six paclitaxel-citronellol conjugates are synthesized using either thioether bond, disulfide bond, selenoether bond, diselenide bond, carbon bond or carbon-carbon bond as linkages. These prodrugs can self-assemble into uniform nanoparticles with ultrahigh drug-loading capacity. Interestingly, sulfur/selenium/carbon bonds significantly affect the efficiency of prodrug nanoassemblies. The bond angles/dihedral angles impact the self-assembly, stability and pharmacokinetics. The redox-responsivity of sulfur/selenium/carbon bonds has remarkable influence on drug release and cytotoxicity. Moreover, selenoether/diselenide bond possess unique ability to produce reactive oxygen species, which further improve the cytotoxicity of these prodrugs. Our findings give deep insight into the impact of chemical linkages on prodrug nanoassemblies and provide strategies to the rational design of redox-responsive drug delivery systems for cancer therapy.
Quantum biological tunnel junction for electron transfer imaging in live cells
Authors: Xin Hongbao , Sim Wen Jing , Namgung Bumseok , Choi Yeonho , Li Baojun , Lee Luke P. 
Published: July 2019

AbstractQuantum biological electron transfer (ET) essentially involves in virtually all important biological processes such as photosynthesis, cellular respiration, DNA repair, cellular homeostasis, and cell death. However, there is no real-time imaging method to capture biological electron tunnelling in live cells to date. Here, we report a quantum biological electron tunnelling (QBET) junction and its application in real-time optical detection of QBET and the dynamics of ET in mitochondrial cytochrome c during cell life and death process. QBET junctions permit to see the behaviours of electron tunnelling through barrier molecules with different barrier widths. Using QBET spectroscopy, we optically capture real-time ET in cytochrome c redox dynamics during cellular apoptosis and necrosis in living cells. The non-invasive real-time QBET spectroscopic imaging of ET in live cell open a new era in life sciences and medicine by providing a way to capture spatiotemporal ET dynamics and to reveal the quantum biological mechanisms.
Acetylation regulates ribonucleotide reductase activity and cancer cell growth
Authors: Chen Guo , Luo Yin , Warncke Kurt , Sun Youwei , Yu David S. , Fu Haian , Behera Madhusmita , Ramalingam Suresh S. , Doetsch Paul W. , Duong Duc M. , Lammers Michael , Curran Walter J. , Deng Xingming 
Published: July 2019

AbstractRibonucleotide reductase (RNR) catalyzes the de novo synthesis of deoxyribonucleoside diphosphates (dNDPs) to provide dNTP precursors for DNA synthesis. Here, we report that acetylation and deacetylation of the RRM2 subunit of RNR acts as a molecular switch that impacts RNR activity, dNTP synthesis, and DNA replication fork progression. Acetylation of RRM2 at K95 abrogates RNR activity by disrupting its homodimer assembly. RRM2 is directly acetylated by KAT7, and deacetylated by Sirt2, respectively. Sirt2, which level peak in S phase, sustains RNR activity at or above a threshold level required for dNTPs synthesis. We also find that radiation or camptothecin-induced DNA damage promotes RRM2 deacetylation by enhancing Sirt2–RRM2 interaction. Acetylation of RRM2 at K95 results in the reduction of the dNTP pool, DNA replication fork stalling, and the suppression of tumor cell growth in vitro and in vivo. This study therefore identifies acetylation as a regulatory mechanism governing RNR activity.
Reversible intercalation of methyl viologen as a dicationic charge carrier in aqueous batteries
Authors: Wei Zhixuan , Shin Woochul , Jiang Heng , Wu Xianyong , Stickle William F. , Chen Gang , Lu Jun , Alex Greaney P. , Du Fei , Ji Xiulei 
Published: July 2019

AbstractThe interactions between charge carriers and electrode structures represent one of the most important considerations in the search for new energy storage devices. Currently, ionic bonding dominates the battery chemistry. Here we report the reversible insertion of a large molecular dication, methyl viologen, into the crystal structure of an aromatic solid electrode, 3,4,9,10-perylenetetracarboxylic dianhydride. This is the largest insertion charge carrier when non-solvated ever reported for batteries; surprisingly, the kinetic properties of the (de)insertion of methyl viologen are excellent with 60% of capacity retained when the current rate is increased from 100 mA g−1 to 2000 mA g−1. Characterization reveals that the insertion of methyl viologen causes phase transformation of the organic host, and embodies guest-host chemical bonding. First-principles density functional theory calculations suggest strong guest-host interaction beyond the pure ionic bonding, where a large extent of covalency may exist. This study extends the boundary of battery chemistry to large molecular ions as charge carriers and also highlights the electrochemical assembly of a supramolecular system.
RNA is a critical element for the sizing and the composition of phase-separated RNA–protein condensates
Authors: Garcia-Jove Navarro Marina , Kashida Shunnichi , Chouaib Racha , Souquere Sylvie , Pierron Gérard , Weil Dominique , Gueroui Zoher 
Published: July 2019

AbstractLiquid–liquid phase separation is thought to be a key organizing principle in eukaryotic cells to generate highly concentrated dynamic assemblies, such as the RNP granules. Numerous in vitro approaches have validated this model, yet a missing aspect is to take into consideration the complex molecular mixture and promiscuous interactions found in vivo. Here we report the versatile scaffold ArtiG to generate concentration-dependent RNA–protein condensates within living cells, as a bottom-up approach to study the impact of co-segregated endogenous components on phase separation. We demonstrate that intracellular RNA seeds the nucleation of the condensates, as it provides molecular cues to locally coordinate the formation of endogenous high-order RNP assemblies. Interestingly, the co-segregation of intracellular components ultimately impacts the size of the phase-separated condensates. Thus, RNA arises as an architectural element that can influence the composition and the morphological outcome of the condensate phases in an intracellular context.
Determining the rotation direction in pulsars
Authors: Gueroult Renaud , Shi Yuan , Rax Jean-Marcel , Fisch Nathaniel J. 
Published: July 2019

AbstractPulsars are rotating neutron stars emitting lighthouse-like beams. Owing to their unique properties, pulsars are a unique astrophysical tool to test general relativity, inform on matter in extreme conditions, and probe galactic magnetic fields. Understanding pulsar physics and emission mechanisms is critical to these applications. Here we show that mechanical-optical rotation in the pulsar magnetosphere affects polarisation in a way which is indiscernible from Faraday rotation in the interstellar medium for typical GHz observations frequency, but which can be distinguished in the sub-GHz band. Besides being essential to correct for possible systematic errors in interstellar magnetic field estimates, this result offers a unique means to determine the rotation direction of pulsars, providing additional constraints on magnetospheric physics. With the ongoing development of sub-GHz observation capabilities, our finding promises discoveries, such as the spatial distribution of pulsars rotation directions, which could exhibit potentially interesting, but presently invisible, correlations or features.
Stereoselective synthesis of medium lactams enabled by metal-free hydroalkoxylation/stereospecific [1,3]-rearrangement
Authors: Zhou Bo , Zhang Ying-Qi , Zhang Kairui , Yang Ming-Yang , Chen Yang-Bo , Li You , Peng Qian , Zhu Shou-Fei , Zhou Qi-Lin , Ye Long-Wu 
Published: July 2019

AbstractRearrangement reactions have attracted considerable interest over the past decades due to their high bond-forming efficiency and atom economy in the construction of complex organic architectures. In contrast to the well-established [3,3]-rearrangement, [1,3] O-to-C rearrangement has been far less vigorously investigated, and stereospecific [1,3]-rearrangement is extremely rare. Here, we report a metal-free intramolecular hydroalkoxylation/[1,3]-rearrangement, leading to the practical and atom-economical assembly of various valuable medium-sized lactams with wide substrate scope and excellent diastereoselectivity. Moreover, such an asymmetric cascade cyclization has also been realized by chiral Brønsted acid-catalyzed kinetic resolution. In addition, biological tests reveal that some of these medium-sized lactams displayed their bioactivity as antitumor agents against melanoma cells, esophageal cancer cells and breast cancer cells. A mechanistic rationale for the reaction is further supported by control experiments and theoretical calculations.
Phosphorylation of MAVS/VISA by Nemo-like kinase (NLK) for degradation regulates the antiviral innate immune response
Authors: Li Shang-Ze , Shu Qi-Peng , Song Yang , Zhang Hui-Hui , Liu Yi , Jin Bing-Xue , Liuyu Tian-Zi , Li Chao , Huang Xi-Chen , Du Run-Lei , Song Wei , Zhong Bo , Zhang Xiao-Dong 
Published: July 2019

AbstractMAVS is essential for antiviral immunity, but the molecular mechanisms responsible for its tight regulation remain poorly understood. Here, we show that NLK inhibits the antiviral immune response during viral infection by targeting MAVS for degradation. NLK depletion promotes virus-induced antiviral cytokine production and decreases viral replication, which is potently rescued by the reintroduction of NLK. Moreover, the depletion of NLK promotes antiviral effects and increases the survival times of mice after infection with VSV. NLK interacts with and phosphorylates MAVS at multiple sites on mitochondria or peroxisomes, thereby inducing the degradation of MAVS and subsequent inactivation of IRF3. Most importantly, a peptide derived from MAVS promotes viral-induced IFN-β production and antagonizes viral replication in vitro and in vivo. These findings provide direct insights into the molecular mechanisms by which phosphorylation of MAVS regulates its degradation and influences its activation and identify an important peptide target for propagating antiviral responses.
Stochastic search and joint fine-mapping increases accuracy and identifies previously unreported associations in immune-mediated diseases
Authors: Asimit Jennifer L. , Rainbow Daniel B. , Fortune Mary D. , Grinberg Nastasiya F. , Wicker Linda S. , Wallace Chris 
Published: July 2019

AbstractThousands of genetic variants are associated with human disease risk, but linkage disequilibrium (LD) hinders fine-mapping the causal variants. Both lack of power, and joint tagging of two or more distinct causal variants by a single non-causal SNP, lead to inaccuracies in fine-mapping, with stochastic search more robust than stepwise. We develop a computationally efficient multinomial fine-mapping (MFM) approach that borrows information between diseases in a Bayesian framework. We show that MFM has greater accuracy than single disease analysis when shared causal variants exist, and negligible loss of precision otherwise. MFM analysis of six immune-mediated diseases reveals causal variants undetected in individual disease analysis, including in IL2RA where we confirm functional effects of multiple causal variants using allele-specific expression in sorted CD4+ T cells from genotype-selected individuals. MFM has the potential to increase fine-mapping resolution in related diseases enabling the identification of associated cellular and molecular phenotypes.
A ZEB1/p53 signaling axis in stromal fibroblasts promotes mammary epithelial tumours
Authors: Fu Rong , Han Chen-Feng , Ni Ting , Di Lei , Liu Li-Juan , Lv Wen-Cong , Bi Yan-Ran , Jiang Nan , He Yin , Li Hong-Mei , Wang Shui , Xie Hui , Chen Bao-An , Wang Xiao-Sheng , Weiss Stephen J. , Lu Tao , Guo Qing-Long , Wu Zhao-Qiu 
Published: July 2019

AbstractAccumulating evidence indicates that the zinc-finger transcription factor ZEB1 is predominantly expressed in the stroma of several tumours. However, the role of stromal ZEB1 in tumour progression remains unexplored. In this study, while interrogating human databases, we uncover a remarkable decrease in relapse-free survival of breast cancer patients expressing high ZEB1 levels in the stroma. Using a mouse model of breast cancer, we show that ZEB1 inactivation in stromal fibroblasts suppresses tumour initiation, progression and metastasis. We associate this with reduced extracellular matrix remodeling, immune cell infiltration and decreased angiogenesis. ZEB1 deletion in stromal fibroblasts increases acetylation, expression and recruitment of p53 to FGF2/7, VEGF and IL6 promoters, thereby reducing their production and secretion into the surrounding stroma. Importantly, p53 ablation in ZEB1 stroma-deleted mammary tumours sufficiently recovers the impaired cancer growth and progression. Our findings identify the ZEB1/p53 axis as a stroma-specific signaling pathway that promotes mammary epithelial tumours.
Controlled open-cell two-dimensional liquid foam generation for micro- and nanoscale patterning of materials
Authors: Bae Juyeol , Lee Kyunghun , Seo Sangjin , Park Jun Gyu , Zhou Qitao , Kim Taesung 
Published: July 2019

AbstractLiquid foam consists of liquid film networks. The films can be thinned to the nanoscale via evaporation and have potential in bottom-up material structuring applications. However, their use has been limited due to their dynamic fluidity, complex topological changes, and physical characteristics of the closed system. Here, we present a simple and versatile microfluidic approach for controlling two-dimensional liquid foam, designing not only evaporative microholes for directed drainage to generate desired film networks without topological changes for the first time, but also microposts to pin the generated films at set positions. Patterning materials in liquid is achievable using the thin films as nanoscale molds, which has additional potential through repeatable patterning on a substrate and combination with a lithographic technique. By enabling direct-writable multi-integrated patterning of various heterogeneous materials in two-dimensional or three-dimensional networked nanostructures, this technique provides novel means of nanofabrication superior to both lithographic and bottom-up state-of-the-art techniques.
Repeated evolution of cytochrome P450-mediated spiroketal steroid biosynthesis in plants
Authors: Christ Bastien , Xu Chengchao , Xu Menglong , Li Fu-Shuang , Wada Naoki , Mitchell Andrew J. , Han Xiu-Lin , Wen Meng-Liang , Fujita Makoto , Weng Jing-Ke 
Published: July 2019

AbstractDiosgenin is a spiroketal steroidal natural product extracted from plants and used as the single most important precursor for the world steroid hormone industry. The sporadic occurrences of diosgenin in distantly related plants imply possible independent biosynthetic origins. The characteristic 5,6-spiroketal moiety in diosgenin is reminiscent of the spiroketal moiety present in anthelmintic avermectins isolated from actinomycete bacteria. How plants gained the ability to biosynthesize spiroketal natural products is unknown. Here, we report the diosgenin-biosynthetic pathways in himalayan paris (Paris polyphylla), a monocot medicinal plant with hemostatic and antibacterial properties, and fenugreek (Trigonella foenum–graecum), an eudicot culinary herb plant commonly used as a galactagogue. Both plants have independently recruited pairs of cytochromes P450 that catalyze oxidative 5,6-spiroketalization of cholesterol to produce diosgenin, with evolutionary progenitors traced to conserved phytohormone metabolism. This study paves the way for engineering the production of diosgenin and derived analogs in heterologous hosts.
A mosaic hemagglutinin-based influenza virus vaccine candidate protects mice from challenge with divergent H3N2 strains
Authors: Broecker Felix , Liu Sean T. H. , Suntronwong Nungruthai , Sun Weina , Bailey Mark J. , Nachbagauer Raffael , Krammer Florian , Palese Peter 
Published: July 2019

AbstractCurrent seasonal influenza virus vaccines only provide limited, short-lived protection, and antigenic drift in the hemagglutinin surface glycoprotein necessitates their annual re-formulation and re-administration. To overcome these limitations, universal vaccine strategies that aim at eliciting broadly protective antibodies to conserved epitopes of the hemagglutinin show promise for protecting against diverse and drifted influenza viruses. Here a vaccination strategy that focuses antibody responses to conserved epitopes of the H3 hemagglutinin is described. The approach is based on antigenic silencing of the immunodominant major antigenic sites of an H3 protein from 2014 by replacing them with corresponding sequences of exotic avian hemagglutinins, yielding “mosaic” hemagglutinins. In mice, vaccination with inactivated viruses expressing mosaic hemagglutinins induced highly cross-reactive antibodies against the H3 stalk domain that elicited Fc-mediated effector functions in vitro. In addition, the mosaic viruses elicited head-specific antibodies with neutralizing and hemagglutination-inhibiting activity against recent H3N2 viruses in vitro. Immune sera protected mice from heterologous challenge with viruses carrying H3 proteins from 1968 and 1982, whereas immune sera generated with a seasonal vaccine did not protect. Consequently, the mosaic vaccination approach provides a promising avenue toward a universal influenza virus vaccine.