bluuebunny/crossref_metadata_2025_split huggingface dataset:
The burning question: does fire affect habitat selection and forage preference of the black rhinoceros Diceros bicornis in East African savannahs?
Authors: Anderson T. Michael , Ngoti Philbert M. , Nzunda Mawazo L. , Griffith Daniel M. , Speed James D. M. , Fossøy Frode , Røskaft Eivin , Graae Bente J. 
Published: August 2018

AbstractThe conservation of threatened species requires information on how management activities influence habitat quality. The Critically Endangered black rhinoceros Diceros bicornis is restricted to savannahs representing c. 5% of its historical range. Fire is used extensively in savannahs but little is known about how rhinos respond to burning. Our aim was to understand rhino responses to fire by studying habitat selection and foraging at multiple scales. We used resource selection functions and locations of 31 rhinos during 2014–2016 to study rhino habitat use in Serengeti National Park, Tanzania. Rhino selectivity was quantified by comparing forage consumption to plant species availability in randomly sampled vegetation plots; rhino diets were subsequently verified through DNA metabarcoding analysis of faecal samples. Rhino habitat use was a unimodal function of fire history, with highly occupied sites having fire frequencies of < 0.6 fires/year and maximum occupancy occurring at a fire frequency of 0.1 fires/year. Foraging stations had characteristic plant communities, with 17 species associated with rhino foraging. Rhinos were associated with, and disproportionately consumed, woody plants, forbs and legumes, all of which decreased in abundance with increasing fire frequency. In contrast to common management practices, multiple lines of evidence suggest that the current fire regime in the Serengeti negatively influences rhino habitat use and foraging and that frequent fire limits access of rhinos to preferred forage. We outline a conceptual model to guide managers and conservationists in the use of fire under variable habitat conditions.
Winter Ecosystem Respiration and Sources of CO2 From the High Arctic Tundra of Svalbard: Response to a Deeper Snow Experiment
Authors: Lupascu M. , Czimczik C. I. , Welker M. C. , Ziolkowski L. A. , Cooper E. J. , Welker J. M. 
Published: August 2018

AbstractCurrently, there is a lack of understanding on how the magnitude and sources of carbon (C) emissions from High Arctic tundra are impacted by changing snow cover duration and depth during winter. Here we investigated this issue in a graminoid tundra snow fence experiment on shale‐derived gelisols in Svalbard from the end of the growing season and throughout the winter. To characterize emissions, we measured ecosystem respiration (Reco) along with its radiocarbon (14C) content. We assessed the composition of soil organic matter (SOM) by measuring its bulk‐C and nitrogen (N), 14C content, and n‐alkane composition. Our findings reveal that greater snow depth increased soil temperatures and winter Reco (25 mg C m−2 d−1 under deeper snow compared to 13 mg C m−2 d−1 in ambient conditions). At the end of the growing season, Reco was dominated by plant respiration and microbial decomposition of C fixed within the past 60 years (Δ14C = 62 ± 8‰). During winter, emissions were significantly older (Δ14C = −64 ± 14‰), and likely sourced from microorganisms decomposing aged SOM formed during the Holocene mixed with biotic or abiotic mineralization of the carbonaceous, fossil parent material. Our findings imply that snow cover duration and depth is a key control on soil temperatures and thus the magnitude of Reco in winter. We also show that in shallow Arctic soils, mineralization of carbonaceous parent materials can contribute significant proportions of fossil C to Reco. Therefore, permafrost‐C inventories informing C emission projections must carefully distinguish between more vulnerable SOM from recently fixed biomass and more recalcitrant ancient sedimentary C sources.
Observing charge separation in nanoantennas via ultrafast point-projection electron microscopy
Authors: Vogelsang Jan , Hergert Germann , Wang Dong , Groß Petra , Lienau Christoph 
Published: August 2018

AbstractObserving the motion of electrons on their natural nanometer length and femtosecond time scales is a fundamental goal of and an open challenge for contemporary ultrafast science1–5. At present, optical techniques and electron microscopy mostly provide either ultrahigh temporal or spatial resolution, and microscopy techniques with combined space-time resolution require further development6–11. In this study, we create an ultrafast electron source via plasmon nanofocusing on a sharp gold taper and implement this source in an ultrafast point-projection electron microscope. This source is used in an optical pump—electron probe experiment to study ultrafast photoemissions from a nanometer-sized plasmonic antenna12–15. We probe the real space motion of the photoemitted electrons with a 20-nm spatial resolution and a 25-fs time resolution and reveal the deflection of probe electrons by residual holes in the metal. This is a step toward time-resolved microscopy of electronic motion in nanostructures.
Probing the limits of plasmonic enhancement using a two-dimensional atomic crystal probe
Authors: Chen Wen , Zhang Shunping , Kang Meng , Liu Weikang , Ou Zhenwei , Li Yang , Zhang Yexin , Guan Zhiqiang , Xu Hongxing 
Published: August 2018

AbstractAchieving larger electromagnetic enhancement using a nanogap between neighboring metallic nanostructures has been long pursued for boosting light–matter interactions. However, the quantitative probing of this enhancement is hindered by the lack of a reliable experimental method for measuring the local fields within a subnanometer gap. Here, we use layered MoS2 as a two-dimensional atomic crystal probe in nanoparticle-on-mirror nanoantennas to measure the plasmonic enhancement in the gap by quantitative surface-enhanced Raman scattering. Our designs ensure that the probe filled in the gap has a well-defined lattice orientation and thickness, enabling independent extraction of the anisotropic field enhancements. We find that the field enhancement can be safely described by pure classical electromagnetic theory when the gap distance is no <1.24 nm. For a 0.62 nm gap, the probable emergence of quantum mechanical effects renders an average electric field enhancement of 114-fold, 38.4% lower than classical predictions.
The germline genetic component of drug sensitivity in cancer cell lines
Authors: Menden Michael P. , Casale Francesco Paolo , Stephan Johannes , Bignell Graham R. , Iorio Francesco , McDermott Ultan , Garnett Mathew J. , Saez-Rodriguez Julio , Stegle Oliver 
Published: August 2018

AbstractPatients with seemingly the same tumour can respond very differently to treatment. There are strong, well-established effects of somatic mutations on drug efficacy, but there is at-most anecdotal evidence of a germline component to drug response. Here, we report a systematic survey of how inherited germline variants affect drug susceptibility in cancer cell lines. We develop a joint analysis approach that leverages both germline and somatic variants, before applying it to screening data from 993 cell lines and 265 drugs. Surprisingly, we find that the germline contribution to variation in drug susceptibility can be as large or larger than effects due to somatic mutations. Several of the associations identified have a direct relationship to the drug target. Finally, using 17-AAG response as an example, we show how germline effects in combination with transcriptomic data can be leveraged for improved patient stratification and to identify new markers for drug sensitivity.
Brain and psychological determinants of placebo pill response in chronic pain patients
Authors: Vachon-Presseau Etienne , Berger Sara E. , Abdullah Taha B. , Huang Lejian , Cecchi Guillermo A. , Griffith James W. , Schnitzer Thomas J. , Apkarian A. Vania 
Published: August 2018

AbstractThe placebo response is universally observed in clinical trials of pain treatments, yet the individual characteristics rendering a patient a ‘placebo responder’ remain unclear. Here, in chronic back pain patients, we demonstrate using MRI and fMRI that the response to placebo ‘analgesic’ pills depends on brain structure and function. Subcortical limbic volume asymmetry, sensorimotor cortical thickness, and functional coupling of prefrontal regions, anterior cingulate, and periaqueductal gray were predictive of response. These neural traits were present before exposure to the pill and most remained stable across treatment and washout periods. Further, psychological traits, including interoceptive awareness and openness, were also predictive of the magnitude of response. These results shed light on psychological, neuroanatomical, and neurophysiological principles determining placebo response in RCTs in chronic pain patients, and they suggest that the long-term beneficial effects of placebo, as observed in clinical settings, are partially predictable.
Tumour cell invasiveness and response to chemotherapeutics in adipocyte invested 3D engineered anisotropic collagen scaffolds
Authors: Hume Robert D. , Pensa Sara , Brown Elizabeth J. , Kreuzaler Peter A. , Hitchcock Jessica , Husmann Anke , Campbell Jonathan J. , Lloyd-Thomas Annabel O. , Cameron Ruth E. , Watson Christine J. 
Published: August 2018

AbstractBreast cancers are highly heterogeneous and their metastatic potential and response to therapeutic drugs is difficult to predict. A tool that could accurately gauge tumour invasiveness and drug response would provide a valuable addition to the oncologist’s arsenal. We have developed a 3-dimensional (3D) culture model that recapitulates the stromal environment of breast cancers by generating anisotropic (directional) collagen scaffolds seeded with adipocytes and culturing tumour fragments therein. Analysis of tumour cell invasion in the presence of various therapeutic drugs, by immunofluorescence microscopy coupled with an optical clearing technique, demonstrated the utility of this approach in determining both the rate and capacity of tumour cells to migrate through the stroma while shedding light also on the mode of migration. Furthermore, the response of different murine mammary tumour types to chemotherapeutic drugs could be readily quantified.
Mechanochemical synthesis of Si/Cu3Si-based composite as negative electrode materials for lithium ion battery
Authors: Hou Shang-Chieh , Chen Tsan-Yao , Wu Yu-Hsien , Chen Hung-Yuan , Lin Xin-Dian , Chen Yu-Qi , Huang Jow-Lay , Chang Chia-Chin 
Published: August 2018

AbstractMechanochemical synthesis of Si/Cu3Si-based composite as negative electrode materials for lithium ion battery is investigated. Results indicate that CuO is decomposed and alloyed with Si forming amorphous Cu-Si solid solution due to high energy impacting during high energy mechanical milling (HEMM). Upon carbonization at 800 °C, heating energy induces Cu3Si to crystallize in nanocrystalline/amorphous Si-rich matrix enhancing composite rigidity and conductivity. In addition, residual carbon formed on outside surface of composite powder as a buff space further alleviates volume change upon lithiation/delithiation. Thus, coin cell made of C-coated Si/Cu3Si-based composite as negative electrode (active materials loading, 2.3 mg cm−2) conducted at 100 mA g−1 performs the initial charge capacity of 1812 mAh g−1 (4.08 mAh cm−2) columbic efficiency of 83.7% and retained charge capacity of 1470 mAh g−1 (3.31 mAh cm−2) at the end of the 100th cycle, opening a promised window as negative electrode materials for lithium ion batteries.
MicroRNA 375 modulates hyperglycemia-induced enteric glial cell apoptosis and Diabetes-induced gastrointestinal dysfunction by targeting Pdk1 and repressing PI3K/Akt pathway
Authors: Chen Yan , Liu Gongxiang , He Fuqian , Zhang Li , Yang Kun , Yu Huan , Zhou Jinqiu , Gan Huatian 
Published: August 2018

AbstractDiabetic neuropathy can damage systemic nervous system, including alteration of enteric nervous system and subsequent gastrointestinal dysfunction. The effect of diabetes on enteric glia cell (EGC) is not clear. We investigated the effect of diabetes and hyperglycemia on EGC, and the role of microRNA375 in modulating EGC survival in vivo and in vitro. Streptozotocin-induced diabetic mice were intraperitoneally injected with microRNA375 inhibitor or its negative control. EGC was transfected with microRNA375 inhibitor or its mimic. Diabetes mice with gastrointestinal dysfunction showed increased apoptosis of EGC (no difference in cell numbers) and gene expression of micorRNA375 in the myenteric plexus. Hyperglycemia triggered apoptosis of EGC in vitro with decreased expression of Pdk1 and p-Akt, but increased expression of micorRNA375. MicorRNA375 mimic induced apoptosis of EGC in vitro with repressed Pdk1and p-Akt. MicorRNA375 inhibitor could both prevent hyperglycemia-induced apoptosis of EGC in vitro and diabetes-induced gastrointestinal dysfunction in vivo. Our results suggest that diabetes-induced gastrointestinal dysfunction is related to increased apoptosis of EGC in the myenteric plexus. Hyperglycemia can increase the expression of microRNA375 and damage EGC survival through PI3K/Akt pathway. MicroRNA375 specific inhibition can prevent hyperglycemia induced EGC damage and diabetes-induced gastrointestinal dysfunction.
Entangled Quantum Dynamics of Many-Body Systems using Bohmian Trajectories
Authors: Elsayed Tarek A. , Mølmer Klaus , Madsen Lars Bojer 
Published: August 2018

AbstractBohmian mechanics is an interpretation of quantum mechanics that describes the motion of quantum particles with an ensemble of deterministic trajectories. Several attempts have been made to utilize Bohmian trajectories as a computational tool to simulate quantum systems consisting of many particles, a very demanding computational task. In this paper, we present a novel ab-initio approach to solve the many-body problem for bosonic systems by evolving a system of one-particle wavefunctions representing pilot waves that guide the Bohmian trajectories of the quantum particles. In this approach, quantum entanglement effects arise due to the interactions between different configurations of Bohmian particles evolving simultaneously. The method is used to study the breathing dynamics and ground state properties in a system of interacting bosons.
Facile and inexpensive fabrication of zinc oxide based bio-surfaces for C-reactive protein detection
Authors: Cao Lu , Kiely Janice , Piano Martina , Luxton Richard 
Published: August 2018

AbstractThe paper reports a biosensor formed from antibody coated ZnO nano-crystals which has been prepared using a rapid and inexpensive fabrication method which utilises colloidal dispersion enhanced using sonication. This technique was used to prepare highly ordered and uniform nano-crystalline sensor surfaces on polyethylene terephthalate (PET) using 0.5%, 1% and 5% concentrations of zinc oxide nano-crystal suspensions. Impedance spectroscopy was employed to interrogate the sensor surfaces and confirmed high reproducibility of the fabrication process. Changes in impedance values, at a frequency of 138 Hz, were used to establish dose dependent responses for C-reactive protein (CRP) antigen. A limit of detection of less than 1 ng/ml was demonstrated for nano-surfaces fabricated from concentrations of 1% ZnO.
Anti-hyperglycemic and anti-hyperlipidemia effects of the alkaloid-rich extract from barks of Litsea glutinosa in ob/ob mice
Authors: Zhang Xiaopo , Jin Yan , Wu Younan , Zhang Caiyun , Jin Dejun , Zheng Qingxia , Li Youbin 
Published: August 2018

AbstractThe present study investigated the anti-hyperglycemic and anti-hyperlipidemia effects of the alkaloid-rich extract from Litsea glutinosa barks (CG) in ob/ob mice. CG was orally administrated (50, 100 and 200 mg/kg) to ob/ob mice for 4 weeks. Parameters of glucose metabolism, hepatotoxicity, hyperlipidemia and inflammation were measured. CG was chemically characterized using UPLC-QTOF-MS. CG dose-dependently decreased body and fat weights without reducing average food intake. CG (100–200 mg/kg) significantly reduced the serum levels of fasting glucose, glycosylated hemoglobin (HbAlc) and glycosylated serum protein (GSP). CG increased insulin sensitivity as manifested by decreased fasting serum insulin, reduced homeostasis model assessment-estimated insulin resistance (HOMA-IR) and improved oral glucose tolerance. CG also alleviated dyslipidemia, ameliorated liver steatosis, increased the activity of serum lipase and alleviated inflammation. The activities of liver pyruvate kinase and glucokinase as well as liver content of glycogen were increased after CG treatment. CG was rich in alkaloids and eight main alkaloids were identified, many of which had been demonstrated to possess adequate anti-diabetic activities. These results suggest that the alkaloid-rich extract of CG possesses potential anti-hyperglycemic and anti-hyperlipidemic effects and can be utilized as an effective agent for the treatment of type 2 diabetes.
α-Gal on the protein surface affects uptake and degradation in immature monocyte derived dendritic cells
Authors: Ristivojević M. Krstić , Grundström J. , Tran T. A. T. , Apostolovic D. , Radoi V. , Starkhammar M. , Vukojević V. , Ćirković Veličković T. , Hamsten C. , van Hage M. 
Published: August 2018

AbstractRed meat allergy is characterized by an IgE response against the carbohydrate galactose-α-1,3-galactose (α-Gal), which is abundantly expressed on glycoproteins from non-primate mammals. The mechanisms of how α-Gal is processed and presented to the immune system to initiate an allergic reaction are still unknown. The aim of this study was to reveal whether the presence of α-Gal epitopes on the protein surface influence antigen uptake and processing in immature monocyte-derived dendritic cells (iMDDCs). Immature MDDCs were prepared from healthy blood donors and red meat allergic patients. We found an increased internalization of α-Gal carrying proteins over time in iMDDCs by flow cytometric analysis, which was independent of the donor allergic status. The uptake of α-Gal carrying proteins was significantly higher than the uptake of non-α-Gal carrying proteins. Confocal microscopy revealed α-Gal carrying proteins scattered around the cytoplasm in most iMDDCs while detection of proteins not carrying α-Gal was negligible. Fluorescent detection of protein on SDS-PAGE showed that degradation of α-Gal carrying proteins was slower than degradation of non-α-Gal carrying proteins. Thus, the presence of α-Gal on the protein surface affects both uptake and degradation of the protein, and the results add new knowledge of α-Gal as a clinically relevant food allergen.
3D Optical Vortex Trapping of Plasmonic Nanostructure
Authors: Liaw Jiunn-Woei , Chien Chiao-Wei , Liu Kun-Chi , Ku Yun-Cheng , Kuo Mao-Kuen 
Published: August 2018

Abstract3D optical vortex trapping upon a polystyrene nanoparticle (NP) by a 1D gold dimer array is studied theoretically. The optical force field shows that the trapping mode can be contact or non-contact. For the former, the NP is attracted toward a corresponding dimer. For the latter, it is trapped toward a stagnation point of zero force with a 3D spiral trajectory, revealing optical vortex. Additionally the optical torque causes the NP to transversely spin, even though the system is irradiated by a linearly polarized light. The transverse spin-orbit interaction is manifested from the opposite helicities of the spin and spiral orbit. Along with the growth and decline of optical vortices the trapped NP performs a step-like motion, as the array continuously moves. Our results, in agreement with the previous experiment, identify the role of optical vortex in the near-field trapping of plasmonic nanostructure.
AMPK contributes to autophagosome maturation and lysosomal fusion
Authors: Jang Minsu , Park Rackhyun , Kim Hyunju , Namkoong Sim , Jo Daum , Huh Yang Hoon , Jang Ik-Soon , Lee Jin I. , Park Junsoo 
Published: August 2018

AbstractAMP-activated protein kinase (AMPK) regulates autophagy initiation when intracellular ATP level decreases. However, the role of AMPK during autophagosome maturation is not fully understood. Here, we report that AMPK contributes to efficient autophagosome maturation and lysosomal fusion. Using CRISPR-Cas9 gene editing, we generated AMPK α1 knockout HEK293T cell lines, in which starvation-induced autophagy is impaired. Compound C, an AMPK-independent autophagy inducer, and trehalose, an mTOR-independent autophagy inducer were used to examine the role of AMPK in autophagosome maturation and lysosomal fusion. While the treatment of control cells with either compound C or trehalose induces activation of autophagosomes as well as autolysosomes, the treatment of AMPK α1 knockout cells with compound C or trehalose induces mainly activation of autophagosomes, but not autolysosomes. We demonstrate that this effect is due to interference with the fusion of autophagosomes with lysosomes in AMPK α1 knockout cells. The transient expression of AMPK α1 can rescue autophagosome maturation. These results indicate that AMPK α1 is required for efficient autophagosome maturation and lysosomal fusion.
Temperature and feeding induce tissue level changes in autotrophic and heterotrophic nutrient allocation in the coral symbiosis – A NanoSIMS study
Authors: Krueger Thomas , Bodin Julia , Horwitz Noa , Loussert-Fonta Céline , Sakr Adrian , Escrig Stéphane , Fine Maoz , Meibom Anders 
Published: August 2018

AbstractCorals access inorganic seawater nutrients through their autotrophic endosymbiotic dinoflagellates, but also capture planktonic prey through heterotrophic feeding. Correlating NanoSIMS and TEM imaging, we visualized and quantified the subcellular fate of autotrophic and heterotrophic C and N in the coral Stylophora pistillata using stable isotopes. Six scenarios were compared after 6 h: autotrophic pulse (13C-bicarbonate, 15N-nitrate) in either unfed or regularly fed corals, and heterotrophic pulse (13C-, 15N-labelled brine shrimps) in regularly fed corals; each at ambient and elevated temperature. Host assimilation of photosynthates was similar under fed and unfed conditions, but symbionts assimilated 10% more C in fed corals. Photoautotrophic C was primarily channelled into host lipid bodies, whereas heterotrophic C and N were generally co-allocated to the tissue. Food-derived label was detected in some subcellular structures associated with the remobilisation of host lipid stores. While heterotrophic input generally exceeded autotrophic input, it was more negatively affected by elevated temperature. The reduced input from both modes of nutrition at elevated temperature was accompanied by a shift in the partitioning of C and N, benefiting epidermis and symbionts. This study provides a unique view into the nutrient partitioning in corals and highlights the tight connection of nutrient fluxes in symbiotic partners.