bluuebunny/crossref_metadata_2025_split huggingface dataset:
InSe as a case between 3D and 2D layered crystals for excitons
Authors: Shubina T. V. , Desrat W. , Moret M. , Tiberj A. , Briot O. , Davydov V. Yu. , Platonov A. V. , Semina M. A. , Gil B. 
Published: August 2019

AbstractInSe is a promising material in many aspects where the role of excitons is decisive. Here we report the sequential appearance in its luminescence of the exciton, the biexciton, and the P-band of the exciton-exciton scattering while the excitation power increases. The strict energy and momentum conservation rules of the P-band are used to reexamine the exciton binding energy. The new value ≥20 meV is markedly higher than the currently accepted one (14 meV), being however well consistent with the robustness of the excitons up to room temperature. A peak controlled by the Sommerfeld factor is found near the bandgap (~1.36 eV). Our findings supported by theoretical calculations taking into account the anisotropic material parameters question the pure three-dimensional character of the exciton in InSe, assumed up to now. The refined character and parameters of the exciton are of paramount importance for the successful application of InSe in nanophotonics.
Wearable multifunctional printed graphene sensors
Authors: Kaidarova Altynay , Khan Mohammed Asadullah , Marengo Marco , Swanepoel Liam , Przybysz Alexander , Muller Cobus , Fahlman Andreas , Buttner Ulrich , Geraldi Nathan R. , Wilson Rory P. , Duarte Carlos M. , Kosel Jurgen 
Published: August 2019

AbstractThe outstanding properties of graphene have initiated myriads of research and development; yet, its economic impact is hampered by the difficulties encountered in production and practical application. Recently discovered laser-induced graphene is generated by a simple printing process on flexible and lightweight polyimide films. Exploiting the electrical features and mechanical pliability of LIG on polyimide, we developed wearable resistive bending sensors that pave the way for many cost-effective measurement systems. The versatile sensors we describe can be utilized in a wide range of configurations, including measurement of force, deflection, and curvature. The deflection induced by different forces and speeds is effectively sensed through a resistance measurement, exploiting the piezoresistance of the printed graphene electrodes. The LIG sensors possess an outstanding range for strain measurements reaching >10% A double-sided electrode concept was developed by printing the same electrodes on both sides of the film and employing difference measurements. This provided a large bidirectional bending response combined with temperature compensation. Versatility in geometry and a simple fabrication process enable the detection of a wide range of flow speeds, forces, and deflections. The sensor response can be easily tuned by geometrical parameters of the bending sensors and the LIG electrodes. As a wearable device, LIG bending sensors were used for tracking body movements. For underwater operation, PDMS-coated LIG bending sensors were integrated with ultra-low power aquatic tags and utilized in underwater animal speed monitoring applications, and a recording of the surface current velocity on a coral reef in the Red Sea.
Rescue-like Behaviour in Mice is Mediated by Their Interest in the Restraint Tool
Authors: Ueno Hiroshi , Suemitsu Shunsuke , Murakami Shinji , Kitamura Naoya , Wani Kenta , Takahashi Yu , Matsumoto Yosuke , Okamoto Motoi , Ishihara Takeshi 
Published: August 2019

AbstractActing without the expectation of compensation is called prosocial behaviour. Since prosocial behaviour requires high cognitive and social abilities, it has been thought to be only shown by primates. Although prosocial behaviour has been recently reported in rats, there are still questions regarding this finding. We demonstrated rescue-like behaviour in mice in a previous report. In this study, we investigated the motives underlying rescue-like behaviour for constrained cage-mates among mice. We prepared either a tube containing a ball of yarn or an opaque tube and assessed whether mice displayed the same rescue-like behaviour shown in the case of tube-restrained cage-mates. Mice did not open the lid of the tube containing the ball of yarn but opened the opaque tube lid. Mice showed a high interest in the tube in which the cage-mate had been restrained and prioritized staying in this tube rather than rescuing additional cage-mates. Oxytocin, which increases empathy, had no effect on the lid-opening behaviour. Thus, the rescue-like behaviour of mice is not based on empathy but is related to social interest in the cage-mate and the tube itself. These results suggest that rodent lid-opening behaviour may not conclusively prove the presence of prosocial behaviour.
Mechanism of CuO nano-particles on stimulating production of actinorhodin in Streptomyces coelicolor by transcriptional analysis
Authors: Liu Xiaomei , Tang Jingchun , Wang Lan , Liu Rutao 
Published: August 2019

AbstractIn this research, antibiotic-producing bacteria, Streptomyces coelicolor (S. coelicolor) M145, was exposed to copper oxide (CuO) particles to investigate the effects of nano-particles (NPs) on antibiotic production. Results showed that a higher yield of antibiotics was obtained with smaller particle sizes of CuO NPs. When exposed to 10 mg/L of 40 nm CuO NPs, the maximum amount of actinorhodin (ACT) obtained was 2.6 mg/L after 144 h, which was 2.0-fold greater than that of control. However, the process was inhibited when the concentration of CuO NPs was increased to higher than 20 mg/L. Transcriptome analysis showed that all the genes involved in the ACT cluster were significantly up-regulated after exposure to 10 mg/L NPs, which could be the direct cause of the increase of ACT production. Additionally, some genes related to the generation of acetyl-coA were up-regulated. In this way, CuO NPs led to an increase of secondary metabolites. The mechanism related to these changes indicated that nano-particle‒induced ROS and Cu2+ played synergetic roles in promoting ACT biosynthesis. This is a first report suggesting that CuO NPs had a significant effect on antibiotic production, which will be helpful in understanding the mechanism of antibiotic production in nature.
Random peptide mixtures entrapped within a copper-cuprite matrix: new antimicrobial agent against methicillin-resistant Staphylococcus aureus
Authors: Bauer Tal Stern , Menagen Barak , Avnir David , Hayouka Zvi 
Published: August 2019

AbstractThe emergence of global antibiotic resistance necessitates the urgent need to develop new and effective antimicrobial agents. Combination of two antimicrobial agents can potentially improve antimicrobial potency and mitigate the development of resistance. Therefore, we have utilized metal molecular doping methodology whereby antimicrobial random peptides mixture (RPMs) are entrapped in a bactericidal copper metal matrix. The copper/RPM composite exhibits greater antimicrobial activity toward methicillin-resistant Staphylococcus aureus (MRSA) than either copper or RPMs alone. Our findings indicate that this bactericidal antimicrobial biomaterial could be utilized to efficiently eradicate antibiotic-resistant pathogenic bacteria for health, agricultural and environmental applications.
Modeling and Cost Benefit Analysis to Guide Deployment of POC Diagnostics for Non-typhoidal Salmonella Infections with Antimicrobial Resistance
Authors: Manore Carrie , Graham Todd , Carr Alexa , Feryn Alicia , Jakhar Shailja , Mukundan Harshini , Highlander Hannah Callender 
Published: August 2019

AbstractInvasive non-typhoidal Salmonella (NTS) is among the leading causes of blood stream infections in sub-Saharan Africa and other developing regions, especially among pediatric populations. Invasive NTS can be difficult to treat and have high case-fatality rates, in part due to emergence of strains resistant to broad-spectrum antibiotics. Furthermore, improper treatment contributes to increased antibiotic resistance and death. Point of care (POC) diagnostic tests that rapidly identify invasive NTS infection, and differentiate between resistant and non-resistant strains, may greatly improve patient outcomes and decrease resistance at the community level. Here we present for the first time a model for NTS dynamics in high risk populations that can analyze the potential advantages and disadvantages of four strategies involving POC diagnostic deployment, and the resulting impact on antimicrobial treatment for patients. Our analysis strongly supports the use of POC diagnostics coupled with targeted antibiotic use for patients upon arrival in the clinic for optimal patient and public health outcomes. We show that even the use of imperfect POC diagnostics can significantly reduce total costs and number of deaths, provided that the diagnostic gives results quickly enough that patients are likely to return or stay to receive targeted treatment.
FePO4 nanoparticles produced by an industrially scalable continuous-flow method are an available form of P and Fe for cucumber and maize plants
Authors: Sega Davide , Ciuffreda Giuseppe , Mariotto Gino , Baldan Barbara , Zamboni Anita , Varanini Zeno 
Published: August 2019

AbstractNanomaterials are widely used in medical and pharmaceutical fields, but their application in plant nutrition is at its infancy. Phosphorous (P) and iron (Fe) are essential mineral nutrients limiting in a wide range of conditions the yield of crops. Phosphate and Fe fertilizers to-date on the market display low efficiency (P fertilizers) and low persistence in soil (Fe fertilizers) and negatively affect the environment. In the tentative to overcome these problems, we developed a continuous industrially scalable method to produce FePO4NPs based on the rapid mixing of salt solutions in a mixing chamber. The process, that included the addition of citrate as capping agent allowed to obtain a stable suspension of NPs over the time. The NPs were tested for their effectiveness as P and Fe sources on two hydroponically grown crop species (cucumber and maize) comparing their effects to those exerted by non-nanometric FePO4(bulk FePO4). The results showed that FePO4NPs improved the availability of P and Fe, if compared to the non-nano counterpart, as demonstrated by leaf SPAD indexes, fresh biomasses and P and Fe contents in tissues. The results open a new avenue in the application of nanosized material in the field of plant nutrition and fertilization.
The population structure of Clostridium tetani deduced from its pan-genome
Authors: Chapeton-Montes Diana , Plourde Lucile , Bouchier Christiane , Ma Laurence , Diancourt Laure , Criscuolo Alexis , Popoff Michel Robert , Brüggemann Holger 
Published: August 2019

AbstractClostridium tetani produces a potent neurotoxin, the tetanus neurotoxin (TeNT) that is responsible for the worldwide neurological disease tetanus, but which can be efficiently prevented by vaccination with tetanus toxoid. Until now only one type of TeNT has been characterized and very little information exists about the heterogeneity among C. tetani strains. We report here the genome sequences of 26 C. tetani strains, isolated between 1949 and 2017 and obtained from different locations. Genome analyses revealed that the C. tetani population is distributed in two phylogenetic clades, a major and a minor one, with no evidence for clade separation based on geographical origin or time of isolation. The chromosome of C. tetani is highly conserved; in contrast, the TeNT-encoding plasmid shows substantial heterogeneity. TeNT itself is highly conserved among all strains; the most relevant difference is an insertion of four amino acids in the C-terminal receptor-binding domain in four strains that might impact on receptor-binding properties. Other putative virulence factors, including tetanolysin and collagenase, are encoded in all genomes. This study highlights the population structure of C. tetani and suggests that tetanus-causing strains did not undergo extensive evolutionary diversification, as judged from the high conservation of its main virulence factors.
In silico design and optimization of selective membranolytic anticancer peptides
Authors: Gabernet Gisela , Gautschi Damian , Müller Alex T. , Neuhaus Claudia S. , Armbrecht Lucas , Dittrich Petra S. , Hiss Jan A. , Schneider Gisbert 
Published: August 2019

AbstractMembranolytic anticancer peptides represent a potential strategy in the fight against cancer. However, our understanding of the underlying structure-activity relationships and the mechanisms driving their cell selectivity is still limited. We developed a computational approach as a step towards the rational design of potent and selective anticancer peptides. This machine learning model distinguishes between peptides with and without anticancer activity. This classifier was experimentally validated by synthesizing and testing a selection of 12 computationally generated peptides. In total, 83% of these predictions were correct. We then utilized an evolutionary molecular design algorithm to improve the peptide selectivity for cancer cells. This simulated molecular evolution process led to a five-fold selectivity increase with regard to human dermal microvascular endothelial cells and more than ten-fold improvement towards human erythrocytes. The results of the present study advocate for the applicability of machine learning models and evolutionary algorithms to design and optimize novel synthetic anticancer peptides with reduced hemolytic liability and increased cell-type selectivity.
Spatio-temporal secondary instabilities near the Turing-Hopf bifurcation
Authors: Ledesma-Durán Aldo , Aragón José L. 
Published: August 2019

AbstractIn this work, we provide a framework to understand and quantify the spatiotemporal structures near the codimension-two Turing-Hopf point, resulting from secondary instabilities of Mixed Mode solutions of the Turing-Hopf amplitude equations. These instabilities are responsible for solutions such as (1) patterns which change their effective wavenumber while they oscillate as well as (2) phase instability combined with a spatial pattern. The quantification of these instabilities is based on the solution of the fourth order polynomial for the dispersion relation, which is solved using perturbation techniques. With the proposed methodology, we were able to identify and numerically corroborate that these two kinds of solutions are generalizations of the well known Eckhaus and Benjamin-Feir-Newell instabilities, respectively. Numerical simulations of the coupled system of real and complex Ginzburg-Landau equations are presented in space-time maps, showing quantitative and qualitative agreement with the predicted stability of the solutions. The relation with spatiotemporal intermittency and chaos is also illustrated.
Molecular integration of the anti-tropomyosin compound ATM-3507 into the coiled coil overlap region of the cancer-associated Tpm3.1
Authors: Janco Miro , Rynkiewicz Michael J. , Li Liang , Hook Jeff , Eiffe Eleanor , Ghosh Anita , Böcking Till , Lehman William J. , Hardeman Edna C. , Gunning Peter W. 
Published: August 2019

AbstractTropomyosins (Tpm) determine the functional capacity of actin filaments in an isoform-specific manner. The primary isoform in cancer cells is Tpm3.1 and compounds that target Tpm3.1 show promising results as anti-cancer agents both in vivo and in vitro. We have determined the molecular mechanism of interaction of the lead compound ATM-3507 with Tpm3.1-containing actin filaments. When present during co-polymerization of Tpm3.1 with actin, 3H-ATM-3507 is incorporated into the filaments and saturates at approximately one molecule per Tpm3.1 dimer and with an apparent binding affinity of approximately 2 µM. In contrast, 3H-ATM-3507 is poorly incorporated into preformed Tpm3.1/actin co-polymers. CD spectroscopy and thermal melts using Tpm3.1 peptides containing the C-terminus, the N-terminus, and a combination of the two forming the overlap junction at the interface of adjacent Tpm3.1 dimers, show that ATM-3507 shifts the melting temperature of the C-terminus and the overlap junction, but not the N-terminus. Molecular dynamic simulation (MDS) analysis predicts that ATM-3507 integrates into the 4-helix coiled coil overlap junction and in doing so, likely changes the lateral movement of Tpm3.1 across the actin surface resulting in an alteration of filament interactions with actin binding proteins and myosin motors, consistent with the cellular impact of ATM-3507.
A Novel Cell-Penetrating Antibody Fragment Inhibits the DNA Repair Protein RAD51
Authors: Pastushok Landon , Fu Yongpeng , Lin Leo , Luo Yu , DeCoteau John F. , Lee Ken , Geyer C. Ronald 
Published: August 2019

AbstractDNA damaging chemotherapies are successful in cancer therapy, however, the damage can be reversed by DNA repair mechanisms that may be up-regulated in cancer cells. We hypothesized that inhibiting RAD51, a protein involved in homologous recombination DNA repair, would block DNA repair and restore the effectiveness of DNA damaging chemotherapy. We used phage-display to generate a novel synthetic antibody fragment that bound human RAD51 with high affinity (KD = 8.1 nM) and inhibited RAD51 ssDNA bindingin vitro. As RAD51 is an intracellular target, we created a corresponding intrabody fragment that caused a strong growth inhibitory phenotype on human cells in culture. We then used a novel cell-penetrating peptide “iPTD” fusion to generate a therapeutically relevant antibody fragment that effectively entered living cells and enhanced the cell-killing effect of a DNA alkylating agent. The iPTD may be similarly useful as a cell-penetrating peptide for other antibody fragments and open the door to numerous intracellular targets previously off-limits in living cells.
Confined System Analysis of a Predator-Prey Minimalistic Model
Authors: Mohapatra Siddhant , Mahapatra Pallab Sinha 
Published: August 2019

AbstractIn nature exists a properly defined food chain- an order of hunting and getting hunted. One such hunter-hunted pair is considered in this context and coordinated escape manoeuvres in response to predation is studied in case of a rarely examined confined system. Both the predator agent and prey agents are considered to be self-propelled particles moving in a viscous fluid. The state of motility when alive and passivity on death has been accounted for. A novel individual-based combination of Vicsek model and Boids flocking model is used for defining the self-propelling action and inter-agent interactions. The regimes observed at differing levels of co-ordination segregated by quantification of global order parameter are found to be in agreement with the extant literature. This study strives to understand the penalty on the collective motion due to the restraints employed by the rigid walls of the confinement and the predator’s hunting tactics. The success of any escape manoeuvre is dependent on the rate of information transfer and the strength of the agitation at the source of the manoeuvre. The rate of information transfer is studied as a function of co-ordination and the size of the influence zone and the source strength is studied as a function of escape acceleration activated on the agitated prey. The role of these factors in affecting survival rate of prey is given due coverage.
Neural indices of listening effort in noisy environments
Authors: Dimitrijevic Andrew , Smith Michael L. , Kadis Darren S. , Moore David R. 
Published: August 2019

AbstractListening in a noisy environment is challenging for individuals with normal hearing and can be a significant burden for those with hearing impairment. The extent to which this burden is alleviated by a hearing device is a major, unresolved issue for rehabilitation. Here, we found adult users of cochlear implants (CIs) self-reported listening effort during a speech-in-noise task that was positively related to alpha oscillatory activity in the left inferior frontal cortex, canonical Broca’s area, and inversely related to speech envelope coherence in the 2–5 Hz range originating in the superior-temporal plane encompassing auditory cortex. Left frontal cortex coherence in the 2–5 Hz range also predicted speech-in-noise identification. These data demonstrate that neural oscillations predict both speech perception ability in noise and listening effort.
A portable epigenetic switch for bistable gene expression in bacteria
Authors: Olivenza David R. , Nicoloff Hervé , Sánchez-Romero María Antonia , Cota Ignacio , Andersson Dan I. , Casadesús Josep 
Published: August 2019

AbstractWe describe a portable epigenetic switch based on opvAB, a Salmonella enterica operon that undergoes bistable expression under DNA methylation control. A DNA fragment containing the opvAB promoter and the opvAB upstream regulatory region confers bistability to heterologous genes, yielding OFF and ON subpopulations. Bistable expression under opvAB control is reproducible in Escherichia coli, showing that the opvAB switch can be functional in a heterologous host. Subpopulations of different sizes can be produced at will using engineered opvAB variants. Controlled formation of antibiotic-resistant and antibiotic-susceptible subpopulations may allow use of the opvAB switch in the study of bacterial heteroresistance to antibiotics.
Cells´ Flow and Immune Cell Priming under alternating g-forces in Parabolic Flight
Authors: Moser D. , Sun S. J. , Li N. , Biere K. , Hoerl M. , Matzel S. , Feuerecker M. , Buchheim J.-I. , Strewe C. , Thiel C. S. , Gao Y. X. , Wang C. Z. , Ullrich O. , Long M. , Choukèr A. 
Published: August 2019

AbstractGravitational stress in general and microgravity (µg) in particular are regarded as major stress factors responsible for immune system dysfunction in space. To assess the effects of alternating µg and hypergravity (hyper-g) on immune cells, the attachment of peripheral blood mononuclear cells (PBMCs) to adhesion molecules under flow conditions and the antigen-induced immune activation in whole blood were investigated in parabolic flight (PF). In contrast to hyper-g (1.8 g) and control conditions (1 g), flow and rolling speed of PBMCs were moderately accelerated during µg-periods which were accompanied by a clear reduction in rolling rate. Whole blood analyses revealed a “primed” state of monocytes after PF with potentiated antigen-induced pro-inflammatory cytokine responses. At the same time, concentrations of anti-inflammatory cytokines were increased and monocytes displayed a surface molecule pattern that indicated immunosuppression. The results suggest an immunologic counterbalance to avoid disproportionate immune responses. Understanding the interrelation of immune system impairing and enhancing effects under different gravitational conditions may support the design of countermeasures to mitigate immune deficiencies in space.