bluuebunny/crossref_metadata_2025_split huggingface dataset:
Estimating the incidence of first-episode psychosis using population-based health administrative data to inform early psychosis intervention services
Authors: Anderson Kelly K. , Norman Ross , MacDougall Arlene G. , Edwards Jordan , Palaniyappan Lena , Lau Cindy , Kurdyak Paul 
Published: October 2018

AbstractBackgroundDiscrepancies between population-based estimates of the incidence of psychotic disorder and the treated incidence reported by early psychosis intervention (EPI) programs suggest additional cases may be receiving services elsewhere in the health system. Our objective was to estimate the incidence of non-affective psychotic disorder in the catchment area of an EPI program, and compare this to EPI-treated incidence estimates.MethodsWe constructed a retrospective cohort (1997–2015) of incident cases of non-affective psychosis aged 16–50 years in an EPI program catchment using population-based linked health administrative data. Cases were identified by either one hospitalization or two outpatient physician billings within a 12-month period with a diagnosis of non-affective psychosis. We estimated the cumulative incidence and EPI-treated incidence of non-affective psychosis using denominator data from the census. We also estimated the incidence of first-episode psychosis (people who would meet the case definition for an EPI program) using a novel approach.ResultsOur case definition identified 3245 cases of incident non-affective psychosis over the 17-year period. We estimate that the incidence of first-episode non-affective psychosis in the program catchment area is 33.3 per 100 000 per year (95% CI 31.4–35.1), which is more than twice as high as the EPI-treated incidence of 18.8 per 100 000 per year (95% CI 17.4–20.3).ConclusionsCase ascertainment strategies limited to specialized psychiatric services may substantially underestimate the incidence of non-affective psychotic disorders, relative to population-based estimates. Accurate information on the epidemiology of first-episode psychosis will enable us to more effectively resource EPI services and evaluate their coverage.
Crack formation in soda-lime glass after high-power ion beam irradiation
Authors: Kovivchak Vladimir S. , Panova Tatyana V. 
Published: October 2018

AbstractThe fractures of a soda-lime glass surface layer were investigated under irradiation by a high-power ion beam of nanosecond duration with different current densities. Two kinds of cracks (perpendicular and approximately parallel irradiated surfaces) have been identified. It is defined that cracks approximately parallel to the surface are localized at a depth of 10 ± 2 µm from the irradiated glass surface after one-time irradiation with a current density of 100 A/cm2. The formation of these cracks was detected within ~170 h after the end of irradiation when irradiated samples were under an air atmosphere. In a vacuum, the growth of these cracks was insignificant. It is shown that irradiation of heated glass or heating of glass started no later than 2–3 min after irradiation can suppress or substantially reduce surface fracture of glass. The possible mechanisms of glass fracture were discussed.
Racial/ethnic disparities in cortisol diurnal patterns and affect in adolescence
Authors: Deer Lillybelle K. , Shields Grant S. , Ivory Susannah L. , Hostinar Camelia E. , Telzer Eva H. 
Published: October 2018

AbstractRacial/ethnic minorities are more vulnerable to mental and physical health problems, but we know little about the psychobiological underpinnings of these disparities. In this study, we examined racial/ethnic differences in cortisol diurnal patterns and affect as initial steps toward elucidating long-term health disparities. A racially/ethnically diverse (39.5% White, 60.5% minority) sample of 370 adolescents (57.3% female) between the ages of 11.9 and 18 years (M = 14.65 years, SD = 1.39) participated in this study. These adolescents provided 16 cortisol samples (4 samples per day across 4 days), allowing the computation of diurnal cortisol slopes, the cortisol awakening response, and diurnal cortisol output (area under the curve), as well as daily diary ratings of high-arousal and low-arousal positive and negative affect. Consistent with prior research, we found that racial/ethnic minorities (particularly African American and Latino youth) exhibited flatter diurnal cortisol slopes compared to White youth, F (1, 344.7) = 5.26, p = .02, effect size g = 0.25. Furthermore, African American and Asian American youth reported lower levels of positive affect (both high arousal and low arousal) compared to White youth. Racial/ethnic differences in affect did not explain differences in cortisol patterns, suggesting a need to refine our models of relations between affect and hypothalamic–pituitary–adrenocortical activity. We conclude by proposing that a deeper understanding of cultural development may help elucidate the complex associations between affect and hypothalamic–pituitary–adrenocortical functioning and how they explain racial/ethnic differences in both affect and stress biology.
Agreement of body adiposity index (BAI) and paediatric body adiposity index (BAIp) in determining body fat in Brazilian children and adolescents
Authors: De Santis Filgueiras Mariana , Cecon Roberta Stofeles , de Faria Eliane Rodrigues , de Faria Franciane Rocha , Pereira Patrícia Feliciano , Ribeiro Andréia Queiroz , Priore Silvia Eloiza , de Novaes Juliana Farias 
Published: October 2018

AbstractObjectiveTo evaluate agreement of the body adiposity index (BAI) and paediatric body adiposity index (BAIp) in estimating body fat compared with dual-energy X-ray absorptiometry (DXA) and to propose cut-off points for these indices to classify excess adiposity in Brazilian children and adolescents.DesignCross-sectional study. Measures of weight, height, hip circumference, BMI and body fat percentage (%BF) assessed by DXA were taken, and BAI and BAIp were calculated. The Bland–Altman plot was used to estimate agreement between the methods, and the receiver-operating characteristic curve to determine the cut-off points for BAI and BAIp per age and sex in comparison with DXA.SettingViçosa, Minas Gerais, Brazil.SubjectsChildren and adolescents aged 8–19 years (n 1049).ResultsOf the children and adolescents, 52·4 % were girls. BAI and BAIp had satisfactory performance by the receiver-operating characteristic curve, except for the 18–19 years age group, whose BAIp had better predictive capacity than BAI. The agreement analysis showed that BAI overestimated %BF by 2·64 %, on average, using DXA; while BAIp underestimated %BF by 3·37 %.ConclusionsBAI and BAIp showed low agreement with the body fat obtained by DXA, requiring caution when interpreting body composition data in children and adolescents.
Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes
Authors: Ahlgren Nathan A , Fuchsman Clara A , Rocap Gabrielle , Fuhrman Jed A 
Published: October 2018

Abstract
Much of the diversity of prokaryotic viruses has yet to be described. In particular, there are no viral isolates that infect abundant, globally significant marine archaea including the phylum Thaumarchaeota. This phylum oxidizes ammonia, fixes inorganic carbon, and thus contributes to globally significant nitrogen and carbon cycles in the oceans. Metagenomics provides an alternative to culture-dependent means for identifying and characterizing viral diversity. Some viruses carry auxiliary metabolic genes (AMGs) that are acquired via horizontal gene transfer from their host(s), allowing inference of what host a virus infects. Here we present the discovery of 15 new genomically and ecologically distinct Thaumarchaeota virus populations, identified as contigs that encode viral capsid and thaumarchaeal ammonia monooxygenase genes (amoC). These viruses exhibit depth and latitude partitioning and are distributed globally in various marine habitats including pelagic waters, estuarine habitats, and hydrothermal plume water and sediments. We found evidence of viral amoC expression and that viral amoC AMGs sometimes comprise up to half of total amoC DNA copies in cellular fraction metagenomes, highlighting the potential impact of these viruses on N cycling in the oceans. Phylogenetics suggest they are potentially tailed viruses and share a common ancestor with related marine Euryarchaeota viruses. This work significantly expands our view of viruses of globally important marine Thaumarchaeota.
Astrocytes integrate and drive action potential firing in inhibitory subnetworks
Authors: Deemyad Tara , Lüthi Joel , Spruston Nelson 
Published: October 2018

AbstractMany brain functions depend on the ability of neural networks to temporally integrate transient inputs to produce sustained discharges. This can occur through cell-autonomous mechanisms in individual neurons and through reverberating activity in recurrently connected neural networks. We report a third mechanism involving temporal integration of neural activity by a network of astrocytes. Previously, we showed that some types of interneurons can generate long-lasting trains of action potentials (barrage firing) following repeated depolarizing stimuli. Here we show that calcium signaling in an astrocytic network correlates with barrage firing; that active depolarization of astrocyte networks by chemical or optogenetic stimulation enhances; and that chelating internal calcium, inhibiting release from internal stores, or inhibiting GABA transporters or metabotropic glutamate receptors inhibits barrage firing. Thus, networks of astrocytes influence the spatiotemporal dynamics of neural networks by directly integrating neural activity and driving barrages of action potentials in some populations of inhibitory interneurons.
SMYD2 glutathionylation contributes to degradation of sarcomeric proteins
Authors: Munkanatta Godage Dhanushka N. P. , VanHecke Garrett C. , Samarasinghe Kusal T. G. , Feng Han-Zhong , Hiske Mark , Holcomb Joshua , Yang Zhe , Jin Jian-Ping , Chung Charles S. , Ahn Young-Hoon 
Published: October 2018

AbstractReactive oxygen species (ROS) contribute to the etiology of multiple muscle-related diseases. There is emerging evidence that cellular stress can lead to destabilization of sarcomeres, the contractile unit of muscle. However, it is incompletely understood how cellular stress induces structural destabilization of sarcomeres. Here we report that glutathionylation of SMYD2 contributes to a loss of myofibril integrity and degradation of sarcomeric proteins mediated by MMP-2 and calpain 1. We used a clickable glutathione approach in a cardiomyocyte cell line and found selective glutathionylation of SMYD2 at Cys13. Biochemical analysis demonstrated that SMYD2 upon oxidation or glutathionylation at Cys13 loses its interaction with Hsp90 and N2A, a domain of titin. Upon dissociation from SMYD2, N2A or titin is degraded by activated MMP-2, suggesting a protective role of SMYD2 in sarcomere stability. Taken together, our results support that SMYD2 glutathionylation is a novel molecular mechanism by which ROS contribute to sarcomere destabilization.
Structure of MHC class I-like MILL2 reveals heparan-sulfate binding and interdomain flexibility
Authors: Kajikawa Mizuho , Ose Toyoyuki , Fukunaga Yuko , Okabe Yuki , Matsumoto Naoki , Yonezawa Kento , Shimizu Nobutaka , Kollnberger Simon , Kasahara Masanori , Maenaka Katsumi 
Published: October 2018

AbstractThe MILL family, composed of MILL1 and MILL2, is a group of nonclassical MHC class I molecules that occur in some orders of mammals. It has been reported that mouse MILL2 is involved in wound healing; however, the molecular mechanisms remain unknown. Here, we determine the crystal structure of MILL2 at 2.15 Å resolution, revealing an organization similar to classical MHC class I. However, the α1-α2 domains are not tightly fixed on the α3-β2m domains, indicating unusual interdomain flexibility. The groove between the two helices in the α1-α2 domains is too narrow to permit ligand binding. Notably, an unusual basic patch on the α3 domain is involved in the binding to heparan sulfate which is essential for MILL2 interactions with fibroblasts. These findings suggest that MILL2 has a unique structural architecture and physiological role, with binding to heparan sulfate proteoglycans on fibroblasts possibly regulating cellular recruitment in biological events.
Cryo-EM structures of human STEAP4 reveal mechanism of iron(III) reduction
Authors: Oosterheert Wout , van Bezouwen Laura S. , Rodenburg Remco N. P. , Granneman Joke , Förster Friedrich , Mattevi Andrea , Gros Piet 
Published: October 2018

AbstractEnzymes of the six-transmembrane epithelial antigen of the prostate (STEAP) family reduce Fe3+ and Cu2+ ions to facilitate metal-ion uptake by mammalian cells. STEAPs are highly upregulated in several types of cancer, making them potential therapeutic targets. However, the structural basis for STEAP-catalyzed electron transfer through an array of cofactors to metals at the membrane luminal side remains elusive. Here, we report cryo-electron microscopy structures of human STEAP4 in absence and presence of Fe3+-NTA. Domain-swapped, trimeric STEAP4 orients NADPH bound to a cytosolic domain onto axially aligned flavin-adenine dinucleotide (FAD) and a single b-type heme that cross the transmembrane-domain to enable electron transfer. Substrate binding within a positively charged ring indicates that iron gets reduced while in complex with its chelator. These molecular principles of iron reduction provide a basis for exploring STEAPs as therapeutic targets.
Anisotropic energy transfer in crystalline chromophore assemblies
Authors: Haldar Ritesh , Jakoby Marius , Mazel Antoine , Zhang Qiang , Welle Alexander , Mohamed Tawheed , Krolla Peter , Wenzel Wolfgang , Diring Stéphane , Odobel Fabrice , Richards Bryce S. , Howard Ian A. , Wöll Christof 
Published: October 2018

AbstractAn ideal material for photon harvesting must allow control of the exciton diffusion length and directionality. This is necessary in order to guide excitons to a reaction center, where their energy can drive a desired process. To reach this goal both of the following are required; short- and long-range structural order in the material and a detailed understanding of the excitonic transport. Here we present a strategy to realize crystalline chromophore assemblies with bespoke architecture. We demonstrate this approach by assembling anthracene dibenzoic acid chromophore into a highly anisotropic, crystalline structure using a layer-by-layer process. We observe two different types of photoexcited states; one monomer-related, the other excimer-related. By incorporating energy-accepting chromophores in this crystalline assembly at different positions, we demonstrate the highly anisotropic motion of the excimer-related state along the [010] direction of the chromophore assembly. In contrast, this anisotropic effect is inefficient for the monomer-related excited state.
Cell shape-independent FtsZ dynamics in synthetically remodeled bacterial cells
Authors: Söderström Bill , Badrutdinov Alexander , Chan Helena , Skoglund Ulf 
Published: October 2018

AbstractFtsZ is the main regulator of bacterial cell division. It has been implicated in acting as a scaffolding protein for other division proteins, a force generator during constriction, and more recently, as an active regulator of septal cell wall production. FtsZ assembles into a heterogeneous structure coined the Z-ring due to its resemblance to a ring confined by the midcell geometry. Here, to establish a framework for examining geometrical influences on proper Z-ring assembly and dynamics, we sculpted Escherichia coli cells into unnatural shapes using division- and cell wall-specific inhibitors in a micro-fabrication scheme. This approach allowed us to examine FtsZ behavior in engineered Z-squares and Z-hearts. We use stimulated emission depletion (STED) nanoscopy to show that FtsZ clusters in sculpted cells maintain the same dimensions as their wild-type counterparts. Based on our results, we propose that the underlying membrane geometry is not a deciding factor for FtsZ cluster maintenance and dynamics in vivo.
Cathode-enhanced wastewater treatment in bioelectrochemical systems
Authors: Jain Akshay , He Zhen 
Published: October 2018

AbstractBioelectrochemical systems (BES) have been intensively studied as a new technology for wastewater treatment. However, the treatment efficiency of BES anodes is limited and the anode effluent usually cannot be directly discharged or reused. To enhance the treatment, BES cathodes may be used for additional treatment of selected contaminants. This has been investigated in a number of approaches, which can be grouped into cathode-stimulated treatment and cathode-supported treatment. The former involves electron transfer directly to reduce contaminants like nitrate or dye compounds, while the latter can accomplish contaminant removal by aerobic oxidation, algal growth, production of strong oxidants for advanced oxidation, and/or membrane treatment. This paper aims to provide a concise view and discussion on the cathode-promoted wastewater treatment in BES, analyze challenges pertaining to the cathode treatment, and offer suggestions on the future development of BES for maximized treatment performance.
Drinking water bacterial communities exhibit specific and selective necrotrophic growth
Authors: Chatzigiannidou Ioanna , Props Ruben , Boon Nico 
Published: October 2018

AbstractPhysicochemical water disinfection methods result in the reduction of bacterial concentrations by orders of magnitude, but not in the total elimination of the bacterial community. As such, the dead bacterial biomass may act as a carbon and nutrient source for the survivor populations. The ability of bacterial strains to grow on dead bacterial cells has been described before as necrotrophy. We investigated the impact of killed bacterial biomass of two different bacterial strains on the growth potential of natural drinking water microbial communities. Many indigenous bacterial taxa could grow on dead biomass, with the total bacterial concentration increasing from 104 to 108 cells/ml. Necrotrophic growth was specific (43 enriched taxa) and selective (i.e. enriched taxa were dependent on the type of dead biomass). The potential of natural water communities to grow necrotrophically has remained underexplored. Nevertheless the phenomenon can have a big impact in water quality and deserves more attention.
A standardized quantitative method for detecting remnant alpha-Gal antigen in animal tissues or animal tissue-derived biomaterials and its application
Authors: Lu Yan , Shao Anliang , Shan Yongqiang , Zhao Hongni , Leiguo Ming , Zhang Yongjie , Tang Yinxi , zhang Wei , Jin Yan , Xu Liming 
Published: October 2018

AbstractAlpha-Gal (Gal) epitopes present in animal tissues are known to be the key xenoantigens that elicit xenorejection. However, a standardized method to determine Gal epitope in animal tissue-derived biomaterials does not exist. Herein, a standardized method for quantitative detection of Gal antigen was established based on an ELISA inhibition assay with Gal antibody. In this method, the key optimized experimental conditions were: (1) Gal-antigen positive and negative reference materials were developed, and used as positive and negative control in the test system, respectively; (2) A mixture of artificial Gal-BSA antigen plus Gal-negative matrix was used as the calibration standard sample, making it has similar composition with test sample; and (3) The lysis buffer was combined with the homogenate to expose the Gal antigen as much as possible. The results from validation and application experiments showed that the standardized method had good reproducibility (RSD = 12.48%), and the lower detection limit (LDL) is ~7.1 × 1011 Gal epitopes/reaction. This method has been further developed into a detection Kit (Meitan 70101, China), and it has been developed as a standard method for detecting remnant immunogen of animal tissue derived medical devices, and as the industry standard has been released in China. (YY/T 1561–2017).
Topological insulator with negative spin-orbit coupling and transition between Weyl and Dirac semimetals in InGaN-based quantum wells
Authors: Łepkowski S. P. , Bardyszewski W. 
Published: October 2018

AbstractWe study the influence of negative spin-orbit coupling on the topological phase transition and properties of the topological insulator state in InGaN-based quantum wells grown along c axis of the wurtzite lattice. The realistic eight-band k·p method with relativistic and nonrelativistic linear-k terms is employed. Our calculations show that the negative spin-orbit coupling in InN is not an obstacle to obtain the topological insulator phase in InN/InGaN and InGaN/GaN quantum wells. The bulk energy gap in the topological insulator state can reach 2 meV, which allows experimental verification of the edge state transport in these materials. The topological phase transition occurs due to the band inversion between the highest light hole subband and the lowest conduction subband, and almost always is mediated by the two-dimensional Weyl semimetal, arising from an anticrossing of these subbands at zero in-plane wave vector. However, for certain InGaN/GaN quantum wells, we find that the magnitude of this anticrossing vanishes, leading to the appearance of the Dirac semimetal. The novel transition between the Weyl and Dirac semimetals originates from vanishing of the average in-plane spin-orbit interaction parameter, which decouples the conduction subband from the light hole subband at zero in-plane wave vector.
Epidemiology and Clinical Profile of Cutaneous Warts in Chinese College Students: A Cross-Sectional and Follow-Up Study
Authors: Liu Jianjun , Li Hongtian , Yang Fan , Ren Yingyun , Xia Tianbao , Zhao Zigang , Cao Xiaojia , Wang Zekun , Yin Mengmeng , Lu Shichao 
Published: October 2018

AbstractIn this study, the hands and feet of 15,384 undergraduate and postgraduate students in 3 colleges in Beijing were examined for the presence of cutaneous warts at college-entry, and those diagnosed with warts were followed up 2–3 years later. We identified totally 215 (1.4%; 95% CI, 1.2–1.6%) students with warts. The prevalence was significantly higher in male than in female students (2.0%vs. 0.9%,P < 0.0001). Of the 215 patients, 66.9% and 62.1% had only one wart and 98.3% and 93.2% had warts <1 cm in diameter, on the hands and feet, respectively. Of the 130 patients with a follow-up visit, 78 did not receive any treatment (44 recovered within 2 years). Patients aged 21–25 compared to those aged ≤20 were more likely to be free of warts (hazard ratio = 1.76; 95% CI, 1.07–2.89), while lower father’s education (hazard ratio = 0.19; 95% CI, 0.04–0.98) and poor sleep quality (hazard ratio = 0.41; 95% CI, 0.18–0.92) decreased the likelihood of resolution. The prevalence of warts is 1.4% in college students. The majority of patients have warts <1 cm and approximately 2/3 patients has one wart. Slightly over half of patients recover spontaneously within 2 years. Patients’ age, sleep quality, and paternal education may affect the resolution.