Novel Alterations of Some Mitochondrial tRNA Genes in Vienamese Colorectal Cancer Patients
Authors: Bich Pham Thi , Van Nguyen Thi , To Ta Van , Thai Trinh Hong 
Published: March 2019

Some mutations of mt-DNA which encode tRNA (mt-tRNA) were previously reported to be associated with clinical manifestations of neuromuscular disorders syndrome. In addition, alterations of the mitochondrial genome have been suggested to contribute to mitochondrial dysfunction and tumorigenesis. Alterations in some mt-tRNA genes have also been identified in breast cancer, lung cancer and colorectal cancer. However, so far, we have not found any report on mt-tRNA gene alteration in the Vietnamese colorectal cancer patients. So that, in this study, we analyzed the alterations of some mt-tRNA genes in a group of Vietnamese colorectal cancer patients and predicted influence of the alterations to secondary structure of tRNA based on bioinformatic tools. PCR-RFLP and DNA sequencing methods were used to screening alterations, secondary structure of tRNA was predicted in silico by using a tool of the Vienna RNA Websuite. Results: both A12309G and A12310G of tRNALeu were identified together in two out of 98 patients, and both T12150G and C12154G of tRNAHis were indentified in one out of 19 patients. All of these alterations were heteroplasmic and have not been reported in cancer patients. In particular, the C12154G alteration in the DHR loop led to change of secondary structure of tRNAHis and may affect to function of this tRNA molecule.
Keywords
mt-tRNA, Vietnamese colorectal cancer, PCR-RFLP, DNA sequencing
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