bluuebunny/crossref_metadata_2025_split huggingface dataset:
Environmental and anthropogenic factors affecting the increasing occurrence of shark-human interactions around a fast-developing Indian Ocean island
Authors: Lagabrielle Erwann , Allibert Agathe , Kiszka Jeremy J. , Loiseau Nicolas , Kilfoil James P. , Lemahieu Anne 
Published: February 2018

AbstractUnderstanding the environmental drivers of interactions between predators and humans is critical for public safety and management purposes. In the marine environment, this issue is exemplified by shark-human interactions. The annual shark bite incidence rate (SBIR) in La Réunion (Indian Ocean) is among the highest in the world (up to 1 event per 24,000 hours of surfing) and has experienced a 23-fold increase over the 2005–2016 period. Since 1988, 86% of shark bite events on surfers involved ocean-users off the leeward coast, where 96% of surfing activities took place. We modeled the SBIR as a function of environmental variables, including benthic substrate, sea temperature and period of day. The SBIR peaked in winter, during the afternoon and dramatically increased on coral substrate since the mid-2000s. Seasonal patterns of increasing SBIR followed similar fluctuations of large coastal shark occurrences (particularly the bull sharkCarcharhinus leucas), consistent with the hypothesis that higher shark presence may result in an increasing likelihood of shark bite events. Potential contributing factors and adaptation of ocean-users to the increasing shark bite hazard are discussed. This interdisciplinary research contributes to a better understanding of shark-human interactions. The modeling method is relevant for wildlife hazard management in general.
Synchrony and social connection in immersive Virtual Reality
Authors: Tarr B. , Slater M. , Cohen E. 
Published: February 2018

AbstractSynchronising movements in time with others can have significant positive effects on affiliative attitudes and behaviors. To explore the generalizability of synchrony effects, and to eliminate confounds of suggestion, competence and shared intention typical of standard laboratory and field experiments, we used an Immersive Virtual Reality (VR) environment. Participants, represented as virtual humans, took part in a joint movement activity with two other programmed virtual humans. The timings of the co-participant characters’ movements were covertly manipulated to achieve synchrony or non-synchrony with the focal participant. Participants in the synchrony condition reported significantly greater social closeness to their virtual co-participants than those in the non-synchrony condition. Results indicate that synchrony in joint action causes positive social effects and that these effects are robust in a VR setting. The research can potentially inform the development of VR interventions for social and psychological wellbeing.
Nano-scale mechanisms explain the stiffening and strengthening of ligament tissue with increasing strain rate
Authors: Karunaratne Angelo , Li Simin , Bull Anthony M. J. 
Published: February 2018

AbstractLigament failure is a major societal burden causing disability and pain. Failure is caused by trauma at high loading rates. At the macroscopic level increasing strain rates cause an increase in failure stress and modulus, but the mechanism for this strain rate dependency is not known. Here we investigate the nano scale mechanical property changes of human ligament using mechanical testing combined with synchrotron X-ray diffraction. With increasing strain rate, we observe a significant increase in fibril modulus and a reduction of fibril to tissue strain ratio, revealing that tissue-level stiffening is mainly due to the stiffening of collagen fibrils. Further, we show that the reduction in fibril deformation at higher strain rates is due to reduced molecular strain and fibrillar gaps, and is associated with rapid disruption of matrix-fibril bonding. This reduction in number of interfibrillar cross-links explains the changes in fibril strain; this is verified through computational modelling.
Synergistic effect of mutagenesis and truncation to improve a polyesterase from Clostridium botulinum for polyester hydrolysis
Authors: Biundo Antonino , Reich Johanna , Ribitsch Doris , Guebitz Georg M. 
Published: February 2018

AbstractThe activity of the esterase (Cbotu_EstA) from Clostridium botulinum on the polyester poly(ethylene terephthalate) (PET) was improved by concomitant engineering of two different domains. On the one hand, the zinc-binding domain present in Cbotu_EstA was subjected to site-directed mutagenesis. On the other hand, a specific domain consisting of 71 amino acids at the N-terminus of the enzyme was deleted. Interestingly, a combination of substitution of residues present in the zinc-binding domain (e.g. S199A) synergistically increased the activity of the enzyme on PET seven fold when combined to the truncation of 71 amino acids at the N-terminus of the enzyme only. Overall, when compared to the native enzyme, the combination of truncation and substitutions in the zinc-binding domain lead to a 50-fold activity improvement. Moreover, analysis of the kinetic parameters of the Cbotu_EstA variants indicated a clear shift of activity from water soluble (i.e. para-nitrophenyl butyrate) to insoluble polymeric substrates. These results evidently show that the interaction with non-natural polymeric substrates provides targets for enzyme engineering.
Symmetry between repulsive and attractive interactions in driven-dissipative Bose-Hubbard systems
Authors: Gangat Adil A. , McCulloch Ian P. , Kao Ying-Jer 
Published: February 2018

AbstractThe driven-dissipative Bose-Hubbard model can be experimentally realized with either negative or positive onsite detunings, inter-site hopping energies, and onsite interaction energies. Here we use one-dimensional matrix product density operators to perform a fully quantum investigation of the dependence of the non-equilibrium steady states of this model on the signs of these parameters. Due to a symmetry in the Lindblad master equation, we find that simultaneously changing the sign of the interaction energies, hopping energies, and chemical potentials leaves the local boson number distribution and inter-site number correlations invariant, and the steady-state complex conjugated. This shows that all driven-dissipative phenomena of interacting bosons described by the Lindblad master equation, such as “fermionization” and “superbunching”, can equivalently occur with attractive or repulsive interactions.
Spatial Organization of the Gastrointestinal Microbiota in Urban Canada Geese
Authors: Drovetski Sergei V. , O’Mahoney Michael , Ransome Emma J. , Matterson Kenan O. , Lim Haw Chuan , Chesser R. Terry , Graves Gary R. 
Published: February 2018

AbstractRecent reviews identified the reliance on fecal or cloacal samples as a significant limitation hindering our understanding of the avian gastrointestinal (gut) microbiota and its function. We investigated the microbiota of the esophagus, duodenum, cecum, and colon of a wild urban population of Canada goose (Branta canadensis). From a population sample of 30 individuals, we sequenced the V4 region of the 16S SSU rRNA on an Illumina MiSeq and obtained 8,628,751 sequences with a median of 76,529 per sample. These sequences were assigned to 420 bacterial OTUs and a single archaeon. Firmicutes, Proteobacteria, and Bacteroidetes accounted for 90% of all sequences. Microbiotas from the four gut regions differed significantly in their richness, composition, and variability among individuals. Microbial communities of the esophagus were the most distinctive whereas those of the colon were the least distinctive, reflecting the physical downstream mixing of regional microbiotas. The downstream mixing of regional microbiotas was also responsible for the majority of observed co-occurrence patterns among microbial families. Our results indicate that fecal and cloacal samples inadequately represent the complex patterns of richness, composition, and variability of the gut microbiota and obscure patterns of co-occurrence of microbial lineages.
Differential modulation of the auditory steady state response and inhibitory gating by chloral hydrate anesthesia
Authors: Wang Yuchen , Ma Lanlan , Wang Xuejiao , Qin Ling 
Published: February 2018

AbstractAuditory steady state response (ASSR) and inhibitory gating (IG) are electrophysiological examinations commonly used to evaluate the sensory and cognitive functions of the brain. In some clinic examinations and animal experiments, general anesthesia is necessary to conduct electrophysiological recordings. However, the effects of anesthesia on ASSR and IG remain unclear. For this reason, we recorded local field potentials though electrodes implanted in different brain areas of rats: the auditory cortex (AC), hippocampus (HC), amygdala (AMY), and prefrontal cortex (PFC), and compared the characteristics of ASSR and IG under anesthetized and conscious conditions. We found that ASSR signals were the strongest in the AC, and decreased sequentially in the HP, AMY, and PFC. Chloral hydrate anesthesia significantly reduced the power and phase-locking of ASSR in the AC, HP, and AMY. In contrast, the extent of IG in the AC was weakest and it increased sequentially in the HP, AMY, and PFC. Anesthesia had less effect on the extent of IG. Our results suggest that ASSR and IG may originate from different neural circuits and that IG is more resistant to general anesthesia and therefore better suited to examining the functioning of non-auditory brain regions.
Multi-objective Optimization for Materials Discovery via Adaptive Design
Authors: Gopakumar Abhijith M. , Balachandran Prasanna V. , Xue Dezhen , Gubernatis James E. , Lookman Turab 
Published: February 2018

AbstractGuiding experiments to find materials with targeted properties is a crucial aspect of materials discovery and design, and typically multiple properties, which often compete, are involved. In the case of two properties, new compounds are sought that will provide improvement to existing data points lying on the Pareto front (PF) in as few experiments or calculations as possible. Here we address this problem by using the concept and methods of optimal learning to determine their suitability and performance on three materials data sets; an experimental data set of over 100 shape memory alloys, a data set of 223 M2AX phases obtained from density functional theory calculations, and a computational data set of 704 piezoelectric compounds. We show that the Maximin and Centroid design strategies, based on value of information criteria, are more efficient in determining points on the PF from the data than random selection, pure exploitation of the surrogate model prediction or pure exploration by maximum uncertainty from the learning model. Although the datasets varied in size and source, the Maximin algorithm showed superior performance across all the data sets, particularly when the accuracy of the machine learning model fits were not high, emphasizing that the design appears to be quite forgiving of relatively poor surrogate models.
The lattice of trumping majorization for 4D probability vectors and 2D catalysts
Authors: Bosyk Gustavo M. , Freytes Hector , Bellomo Guido , Sergioli Giuseppe 
Published: February 2018

AbstractThe transformation of an initial bipartite pure state into a target one by means of local operations and classical communication and entangled-assisted by a catalyst defines a partial order between probability vectors. This partial order, so-called trumping majorization, is based on tensor products and the majorization relation. Here, we aim to study order properties of trumping majorization. We show that the trumping majorization partial order is indeed a lattice for four dimensional probability vectors and two dimensional catalysts. In addition, we show that the subadditivity and supermodularity of the Shannon entropy on the majorization lattice are inherited by the trumping majorization lattice. Finally, we provide a suitable definition of distance for four dimensional probability vectors.
Allergic tendencies are associated with larger gray matter volumes
Authors: Takeuchi Hikaru , Taki Yasuyuki , Nouchi Rui , Yokoyama Ryoichi , Kotozaki Yuka , Nakagawa Seishu , Sekiguchi Atsushi , Iizuka Kunio , Yamamoto Yuki , Hanawa Sugiko , Araki Tsuyoshi , Miyauchi Carlos Makoto , Sakaki Kohei , Nozawa Takayuki , Ikeda Shigeyuki , Yokota Susumu , Daniele Magistro , Sassa Yuko , Kawashima Ryuta 
Published: February 2018

AbstractAllergic tendencies are associated with important cognitive and physiological factors, such as intelligence and mathematical abilities. Allergies are widely prevalent, especially in modern life, and the reason for its association with important cognitive variables is an intriguing scientific question. However, despite the unique characteristics of cognitive correlates of allergy, the anatomical correlates of allergy remain unknown. The aim of this study was to identify the associations between regional gray matter volume (rGMV) and allergic tendencies in young adults. In a study cohort of 1,219 healthy, educated young adults, we identified a positive correlation between total allergic tendency and rGMV in large anatomical clusters that mainly encompassed the dorsal part of the cerebral neocortex, right anterior insula, and cerebellum. Furthermore,both mean rGMV of the entire part of these clusters and total allergenic tendency showed a significant positive correlation with spatial ability. These results suggest the link among allergic tendencies, larger rGMV, and the better spatial ability in healthy, educated young adults.
Internal Motion Estimation by Internal-external Motion Modeling for Lung Cancer Radiotherapy
Authors: Chen Haibin , Zhong Zichun , Yang Yiwei , Chen Jiawei , Zhou Linghong , Zhen Xin , Gu Xuejun 
Published: February 2018

AbstractThe aim of this study is to develop an internal-external correlation model for internal motion estimation for lung cancer radiotherapy. Deformation vector fields that characterize the internal-external motion are obtained by respectively registering the internal organ meshes and external surface meshes from the 4DCT images via a recently developed local topology preserved non-rigid point matching algorithm. A composite matrix is constructed by combing the estimated internal phasic DVFs with external phasic and directional DVFs. Principle component analysis is then applied to the composite matrix to extract principal motion characteristics, and generate model parameters to correlate the internal-external motion. The proposed model is evaluated on a 4D NURBS-based cardiac-torso (NCAT) synthetic phantom and 4DCT images from five lung cancer patients. For tumor tracking, the center of mass errors of the tracked tumor are 0.8(±0.5)mm/0.8(±0.4)mm for synthetic data, and 1.3(±1.0)mm/1.2(±1.2)mm for patient data in the intra-fraction/inter-fraction tracking, respectively. For lung tracking, the percent errors of the tracked contours are 0.06(±0.02)/0.07(±0.03) for synthetic data, and 0.06(±0.02)/0.06(±0.02) for patient data in the intra-fraction/inter-fraction tracking, respectively. The extensive validations have demonstrated the effectiveness and reliability of the proposed model in motion tracking for both the tumor and the lung in lung cancer radiotherapy.
In vitro Evaluation of Porous borosilicate, borophosphate and phosphate Bioactive Glasses Scaffolds fabricated using Foaming Agent for Bone Regeneration
Authors: Erasmus E. P. , Sule R. , Johnson O. T. , Massera J. , Sigalas I. 
Published: February 2018

AbstractIn this work, glasses within the borosilicate borophosphate and phosphate family were sintered into 3D porous scaffolds using 60 and 70 vol. % NH4(HCO3) as a foaming agent. All scaffolds produced remained amorphous; apart from one third of the glasses which crystallized. All produced scaffolds had porosity >50% and interconnected pores in the range of 250–570 µm; as evidenced by µCT. The in-vitro dissolution of the scaffolds in SBF and changes in compression were assessed as a function of immersion time. The pH of the solution containing the borosilicate scaffolds increased due to the typical non-congruent dissolution of this glass family. Borophosphate and phosphate scaffolds induced a decrease in pH upon dissolution attributed to the congruent dissolution of those materials and the large release of phosphate within the media. As prepared, scaffolds showed compressive strength of 1.29 ± 0.21, 1.56 ± 0.63, 3.63 ± 0.69 MPa for the borosilicate, borophosphate and phosphate samples sintered with 60 vol. % NH4 (HCO3), respectively. Evidence of hydroxyapatite precipitation on the borosilicate glass scaffolds was shown by SEM/EDS, XRD and ICP-OES analysis. The borophosphate scaffolds remained stable upon dissolution. The phosphate scaffolds were fully crystallized, leading to very large release of phosphate in the media.
Rearrangement of Actin Microfilaments in the Development of Olfactory Receptor Cells in Fish
Authors: Klimenkov Igor V. , Sudakov Nikolay P. , Pastukhov Mikhail V. , Svinov Mikhail M. , Kositsyn Nikolay S. 
Published: February 2018

AbstractAt present, it remains poorly understood how the olfactory neuron migrates through the thick neuroepithelium during its maturation from a stem cell and how it develops a specific sensitivity to environmental odorants after maturation. We investigated the cytochemical features associated with the development of olfactory cells before and after the incorporation of dendrites into the surface of the olfactory epithelium. Using cytochemical staining for the actin cytoskeleton and other cell components, we found that immature neurons acquire a streamlined shape that resembles a «hot-dog» during their migration: a dense layer of actin microfilaments forms beneath the surface membrane of the growing dendrite, and the bulk of the nuclear material moves inside this layer. We have found that when the cell makes contact with its environment, the dendritic terminal develops a wide actin layer, inside which a pore is formed. It is assumed that the functional receptors of odorants generate across this pore the first intracellular signal from environmental water-soluble odorants. These data illustrate the important role of the cytoskeleton in the differentiation of olfactory cells.
Antibodies to a strain-specific citrullinated Epstein-Barr virus peptide diagnoses rheumatoid arthritis
Authors: Trier Nicole Hartwig , Holm Bettina Eide , Heiden Julie , Slot Ole , Locht Henning , Lindegaard Hanne , Svendsen Anders , Nielsen Christoffer Tandrup , Jacobsen Søren , Theander Elke , Houen Gunnar 
Published: February 2018

AbstractRheumatoid arthritis (RA) is a chronic systemic autoimmune disease. Anti-citrullinated protein antibodies (ACPA) are crucial for the serological diagnosis of RA, where Epstein-Barr virus (EBV) has been suggested to be an environmental agent in triggering the onset of the disease. This study aimed to analyse antibody reactivity to citrullinated EBV nuclear antigen-2 (EBNA-2) peptides from three different EBV strains (B95-8, GD1 and AG876) using streptavidin capture enzyme-linked immunosorbent assay. One peptide, only found in a single strain (AG876), obtained a sensitivity and specificity of 77% and 95%, respectively and showed high sequence similarity to the filaggrin peptide originally used for ACPA detection. Comparison of antibody reactivity to commercial assays found that the citrullinated peptide was as effective in detecting ACPA as highly sensitive and specific commercial assays. The data presented demonstrate that the citrullinated EBNA-2 peptide indeed is recognised specifically by RA sera and that the single peptide is able to compete with assays containing multiple peptides. Furthermore, it could be hypothesized that RA may be caused by (a) specific strain(s) of EBV.
mGluR5 antagonism inhibits cocaine reinforcement and relapse by elevation of extracellular glutamate in the nucleus accumbens via a CB1 receptor mechanism
Authors: Li Xia , Peng Xiao-Qing , Jordan Chloe J. , Li Jie , Bi Guo-Hua , He Yi , Yang Hong-Ju , Zhang Hai-Ying , Gardner Eliot L. , Xi Zheng-Xiong 
Published: February 2018

AbstractMetabotropic glutamate receptor 5 (mGluR5) antagonism inhibits cocaine self-administration and reinstatement of drug-seeking behavior. However, the cellular and molecular mechanisms underlying this action are poorly understood. Here we report a presynaptic glutamate/cannabinoid mechanism that may underlie this action. Systemic or intra-nucleus accumbens (NAc) administration of the mGluR5 antagonist 2-methyl-6-(phenylethynyl)-pyridine (MPEP) dose-dependently reduced cocaine (and sucrose) self-administration and cocaine-induced reinstatement of drug-seeking behavior. The reduction in cocaine-taking and cocaine-seeking was associated with a reduction in cocaine-enhanced extracellular glutamate, but not cocaine-enhanced extracellular dopamine (DA) in the NAc. MPEP alone, when administered systemically or locally into the NAc, elevated extracellular glutamate, but not DA. Similarly, the cannabinoid CB1 receptor antagonist, rimonabant, elevated NAc glutamate, not DA. mGluR5s were found mainly in striatal medium-spiny neurons, not in astrocytes, and MPEP-enhanced extracellular glutamate was blocked by a NAc CB1 receptor antagonist or N-type Ca++ channel blocker, suggesting that a retrograde endocannabinoid-signaling mechanism underlies MPEP-induced glutamate release. This interpretation was further supported by our findings that genetic deletion of CB1 receptors in CB1-knockout mice blocked both MPEP-enhanced extracellular glutamate and MPEP-induced reductions in cocaine self-administration. Together, these results indicate that the therapeutic anti-cocaine effects of mGluR5 antagonists are mediated by elevation of extracellular glutamate in the NAc via an endocannabinoid-CB1 receptor disinhibition mechanism.
Controlled Synthesis of ZrO2 Nanoparticles with Tailored Size, Morphology and Crystal Phases via Organic/Inorganic Hybrid Films
Authors: Bumajdad Ali , Nazeer Ahmed Abdel , Al Sagheer Fakhreia , Nahar Shamsun , Zaki Mohamed I. 
Published: February 2018

AbstractIn this investigation, well defined mesoporous zirconia nanoparticles (ZrO2NPs) with cubic, tetragonal or monoclinic pure phase were synthesized via thermal recovery (in air) from chitosan (CS)- or polyvinyl alcohol (PVA)-ZrOxhybrid films, prepared using sol–gel processing. This facile preparative method was found to lead to an almost quantitative recovery of the ZrOx content of the film in the form of ZrO2NPs. Impacts of the thermal recovery temperature (450, 800 and 1100 °C) and polymer type (natural bio-waste CS or synthetic PVA) used in fabricating the organic/inorganic hybrid films on bulk and surface characteristics of the recovered NPs were probed by means of X-ray diffractometry and photoelectron spectroscopy, FT-IR and Laser Raman spectroscopy, transmission electron and atomic force microscopy, and N2sorptiometry. Results obtained showed that the method applied facilates control over the size (6–30 nm) and shape (from loose cubes to agglomerates) of the recovered NPs and, hence, the bulk crystalline phase composition and the surface area (144–52 m2/g) and mesopore size (23–10 nm) and volume (0.31–0.11 cm3/g) of the resulting zirconias.