bluuebunny/crossref_metadata_2025_split huggingface dataset:
Observational constraint on cloud susceptibility weakened by aerosol retrieval limitations
Authors: Ma Po-Lun , Rasch Philip J. , Chepfer Hélène , Winker David M. , Ghan Steven J. 
Published: July 2018

AbstractAerosol-cloud interactions remain a major uncertainty in climate research. Studies have indicated that model estimates of cloud susceptibility to aerosols frequently exceed satellite estimates, motivating model reformulations to increase agreement. Here we show that conventional ways of using satellite information to estimate susceptibility can serve as only a weak constraint on models because the estimation is sensitive to errors in the retrieval procedures. Using instrument simulators to investigate differences between model and satellite estimates of susceptibilities, we find that low aerosol loading conditions are not well characterized by satellites, but model clouds are sensitive to aerosol perturbations in these conditions. We quantify the observational requirements needed to constrain models, and find that the nighttime lidar measurements of aerosols provide a better characterization of tenuous aerosols. We conclude that observational uncertainties and limitations need to be accounted for when assessing the role of aerosols in the climate system.
Selective ensembles in supported palladium sulfide nanoparticles for alkyne semi-hydrogenation
Authors: Albani Davide , Shahrokhi Masoud , Chen Zupeng , Mitchell Sharon , Hauert Roland , López Núria , Pérez-Ramírez Javier 
Published: July 2018

AbstractEnsemble control has been intensively pursued for decades to identify sustainable alternatives to the Lindlar catalyst (PdPb/CaCO3) applied for the partial hydrogenation of alkynes in industrial organic synthesis. Although the geometric and electronic requirements are known, a literature survey illustrates the difficulty of transferring this knowledge into an efficient and robust catalyst. Here, we report a simple treatment of palladium nanoparticles supported on graphitic carbon nitride with aqueous sodium sulfide, which directs the formation of a nanostructured Pd3S phase with controlled crystallographic orientation, exhibiting unparalleled performance in the semi-hydrogenation of alkynes in the liquid phase. The exceptional behavior is linked to the multifunctional role of sulfur. Apart from defining a structure integrating spatially-isolated palladium trimers, the active ensembles, the modifier imparts a bifunctional mechanism and weak binding of the organic intermediates. Similar metal trimers are also identified in Pd4S, evidencing the pervasiveness of these selective ensembles in supported palladium sulfides.
Burden on hydropower units for short-term balancing of renewable power systems
Authors: Yang Weijia , Norrlund Per , Saarinen Linn , Witt Adam , Smith Brennan , Yang Jiandong , Lundin Urban 
Published: July 2018

AbstractThere is a general need to change hydropower operational regimes to balance the growing contribution of variable renewable energy sources in power systems. Quantifying the burden on generation equipment is increasingly uncertain and difficult. Here, we propose a framework combining technical and economic indicators to analyze primary frequency control (PFC) on a timescale of seconds. We develop a model integrating hydraulic, mechanical, and electrical subsystems to characterize efficiency loss, wear and fatigue, regulation mileage, and frequency quality. We evaluate burden relief strategies under three idealized remuneration schemes for PFC, inspired by those used in Sweden, the USA, and China, respectively. We show how burden and compensation vary under future scenarios of renewable power systems. Our framework can be used by producers to develop favorable operation strategies that reduce burden and increase economic value, and by transmission system operators to provide insights on the relation between incentive structures and regulating performance.
miR-103 promotes endothelial maladaptation by targeting lncWDR59
Authors: Natarelli Lucia , Geißler Claudia , Csaba Gergely , Wei Yuanyuan , Zhu Mengyu , di Francesco Andrea , Hartmann Petra , Zimmer Ralf , Schober Andreas 
Published: July 2018

AbstractBlood flow at arterial bifurcations and curvatures is naturally disturbed. Endothelial cells (ECs) fail to adapt to disturbed flow, which transcriptionally direct ECs toward a maladapted phenotype, characterized by chronic regeneration of injured ECs. MicroRNAs (miRNAs) can regulate EC maladaptation through targeting of protein-coding RNAs. However, long noncoding RNAs (lncRNAs), known epigenetic regulators of biological processes, can also be miRNA targets, but their contribution on EC maladaptation is unclear. Here we show that hyperlipidemia- and oxLDL-induced upregulation of miR-103 inhibits EC proliferation and promotes endothelial DNA damage through targeting of novel lncWDR59. MiR-103 impedes lncWDR59 interaction with Notch1-inhibitor Numb, therefore affecting Notch1-induced EC proliferation. Moreover, miR-103 increases the susceptibility of proliferating ECs to oxLDL-induced mitotic aberrations, characterized by an increased micronucleic formation and DNA damage accumulation, by affecting Notch1-related β-catenin co-activation. Collectively, these data indicate that miR-103 programs ECs toward a maladapted phenotype through targeting of lncWDR59, which may promote atherosclerosis.
Heavily and fully modified RNAs guide efficient SpyCas9-mediated genome editing
Authors: Mir Aamir , Alterman Julia F. , Hassler Matthew R. , Debacker Alexandre J. , Hudgens Edward , Echeverria Dimas , Brodsky Michael H. , Khvorova Anastasia , Watts Jonathan K. , Sontheimer Erik J. 
Published: July 2018

AbstractRNA-based drugs depend on chemical modifications to increase potency and to decrease immunogenicity in vivo. Chemical modification will likely improve the guide RNAs involved in CRISPR-Cas9-based therapeutics as well. Cas9 orthologs are RNA-guided microbial effectors that cleave DNA. Here, we explore chemical modifications at all positions of the crRNA guide and tracrRNA cofactor. We identify several heavily modified versions of crRNA and tracrRNA that are more potent than their unmodified counterparts. In addition, we describe fully chemically modified crRNAs and tracrRNAs (containing no 2′-OH groups) that are functional in human cells. These designs will contribute to Cas9-based therapeutics since heavily modified RNAs tend to be more stable in vivo (thus increasing potency). We anticipate that our designs will improve the use of Cas9 via RNP and mRNA delivery for in vivo and ex vivo purposes.
Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms
Authors: Shen Yun , Huang Pin Chieh , Huang Conghui , Sun Peng , Monroy Guillermo L. , Wu Wenjing , Lin Jie , Espinosa-Marzal Rosa M. , Boppart Stephen A. , Liu Wen-Tso , Nguyen Thanh H. 
Published: July 2018

AbstractThe biofilm chemical and physical properties in engineered systems play an important role in governing pathogen transmission, fouling facilities, and corroding metal surfaces. Here, we investigated how simulated drinking water biofilm chemical composition, structure, and stiffness responded to the common scale control practice of adjusting divalent ions and adding polyphosphate. Magnetomotive optical coherence elastography (MM-OCE), a tool developed for diagnosing diseased tissues, was used to determine biofilm stiffness in this study. MM-OCE, together with atomic force microscopy (AFM), revealed that the biofilms developed from a drinking water source with high divalent ions were stiffer compared to biofilms developed either from the drinking water source with low divalent ions or the water containing a scale inhibitor (a polyphosphate). The higher stiffness of biofilms developed from the water containing high divalent ions was attributed to the high content of calcium carbonate, suggested by biofilm composition examination. In addition, by examining the biofilm structure using optical coherence tomography (OCT), the highest biofilm thickness was found for biofilms developed from the water containing the polyphosphate. Compared to the stiff biofilms developed from the water containing high divalent ions, the soft and thick biofilms developed from the water containing polyphosphate will be expected to have higher detachment under drinking water flow. This study suggested that water chemistry could be used to predict the biofilm properties and subsequently design the microbial safety control strategies.
Transcriptional responses of soybean roots to colonization with the root endophytic fungus Piriformospora indica reveals altered phenylpropanoid and secondary metabolism
Authors: Bajaj Ruchika , Huang Yinyin , Gebrechristos Sebhat , Mikolajczyk Brian , Brown Heather , Prasad Ram , Varma Ajit , Bushley Kathryn E. 
Published: July 2018

AbstractPiriformospora indica, a root endophytic fungus, has been shown to enhance biomass production and confer tolerance to various abiotic and biotic stresses in many plant hosts. A growth chamber experiment of soybean (Glycine max) colonized by P. indica compared to uninoculated control plants showed that the fungus significantly increased shoot dry weight, nutrient content, and rhizobial biomass. RNA-Seq analyses of root tissue showed upregulation of 61 genes and downregulation of 238 genes in colonized plants. Gene Ontology (GO) enrichment analyses demonstrated that upregulated genes were most significantly enriched in GO categories related to lignin biosynthesis and regulation of iron transport and metabolism but also mapped to categories of nutrient acquisition, hormone signaling, and response to drought stress. Metabolic pathway analysis revealed upregulation of genes within the phenylpropanoid and derivative pathways such as biosynthesis of monolignol subunits, flavonoids and flavonols (luteolin and quercetin), and iron scavenging siderophores. Highly enriched downregulated GO categories included heat shock proteins involved in response to heat, high-light intensity, hydrogen peroxide, and several related to plant defense. Overall, these results suggest that soybean maintains an association with this root endosymbiotic fungus that improves plant growth and nutrient acquisition, modulates abiotic stress, and promotes synergistic interactions with rhizobia.
Effect of different filling tendencies on the spatial quantum Zeno effect
Authors: Zhang Xin , Xu Chang , Ren Zhongzhou , Peng Jie 
Published: July 2018

AbstractThe quantum Zeno effect is deeply related to the quantum measurement process and thus studies of it may help shed light on the hitherto mysterious measurement process in quantum mechanics. Recently, the spatial quantum Zeno effect is observed in a Bose-Einstein condensate depleted by an electron beam. We theoretically investigate how different intrinsic tendencies of filling affect the quantum Zeno effect in this system by changing the impinging point of the electron beam along the inhomogeneous condensate. Surprisingly, we find no visible effect on the critical dissipation intensity at which the quantum Zeno effect appear. Our finding shows the recent capability of combining the Bose-Einstein condensate with an electron beam offers a great opportunity for studying the spatial quantum Zeno effect, and more generally the dynamics of a quantum many-body system out of equilibrium.
Diversity among blaKPC-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients
Authors: Hazen Tracy H. , Mettus Roberta , McElheny Christi L. , Bowler Sarah L. , Nagaraj Sushma , Doi Yohei , Rasko David A. 
Published: July 2018

AbstractCarbapenem resistant Enterobacteriaceae are a significant public health concern, and genes encoding the Klebsiella pneumoniae carbapenemase (KPC) have contributed to the global spread of carbapenem resistance. In the current study, we used whole-genome sequencing to investigate the diversity of blaKPC-containing plasmids and antimicrobial resistance mechanisms among 26 blaKPC-containing Escherichia coli, and 13 blaKPC-containing Enterobacter asburiae, Enterobacter hormaechei, K. pneumoniae, Klebsiella variicola, Klebsiella michiganensis, and Serratia marcescens strains, which were isolated from the same patients as the blaKPC-containing E. coli. A blaKPC-containing IncN and/or IncFIIK plasmid was identified in 77% (30/39) of the E. coli and other bacterial species analyzed. Complete genome sequencing and comparative analysis of a blaKPC-containing IncN plasmid from one of the E. coli strains demonstrated that this plasmid is present in the K. pneumoniae and S. marcescens strains from this patient, and is conserved among 13 of the E. coli and other bacterial species analyzed. Interestingly, while both IncFIIK and IncN plasmids were prevalent among the strains analyzed, the IncN plasmids were more often identified in multiple bacterial species from the same patients, demonstrating a contribution of this IncN plasmid to the inter-genera dissemination of the blaKPC genes between the E. coli and other bacterial species analyzed.
Risk-adjustment of diabetes health outcomes improves the accuracy of performance benchmarking
Authors: Danek Eleanor , Earnest Arul , Wischer Natalie , Andrikopoulos Sofianos , Pease Anthony , Nanayakkara Natalie , Zoungas Sophia 
Published: July 2018

AbstractBenchmarking clinical performance by comparing diabetes health outcomes across healthcare providers drives quality improvement. Non-care related patient risk factors are likely to confound clinical performance, but few studies have tested this. This cross-sectional study is the first Australian investigation to analyse the effect of risk-adjustment for non-care related patient factors on benchmarking. Data from 4,670 patients with type 2 (n = 3,496) or type 1 (n = 1,174) were analysed across 49 diabetes centres. Diabetes health outcomes (HbA1c levels, LDL-cholesterol levels, systolic blood pressure and rates of severe hypoglycaemia) were risk-adjusted for non-care related patient factors using multivariate stepwise linear and logistic regression models. Unadjusted and risk-adjusted funnel plots were constructed for each outcome to identify low-performing and high-performing outliers. Unadjusted funnel plots identified 27 low-performing outliers and 15 high-performing outliers across all diabetes health outcomes. After risk-adjustment, 22 (81%) low-performing outliers and 13 (87%) high-performing outliers became inliers. Additionally, one inlier became a low-performing outlier. Risk-adjustment of diabetes health outcomes significantly reduced false positives and false negatives for outlier performance, hence providing more accurate information to guide quality improvement activity.
Lifespan and functionality of mycorrhizal fungal mycelium are uncoupled from host plant lifespan
Authors: Pepe Alessandra , Giovannetti Manuela , Sbrana Cristiana 
Published: July 2018

AbstractArbuscular mycorrhizal fungi (AMF) are obligate symbionts, living in associations with the roots of most land plants. AMF produce wide networks of extraradical mycelium (ERM) of indeterminate length, spreading from host roots into the surrounding soil and establishing belowground interconnections among plants belonging to the same or to different taxa. Whether their lifespan and functionality are limited by host plant viability or can be extended beyond this limit is unknown. To address this issue, we performed time-course studies to investigate viability and functionality of ERM produced in anin vivowhole-plant system byFunneliformis mosseaeandRhizoglomus irregulare, after shoot detachment. Our data revealed that viability and functionality ofF. mosseaeandR. irregulareextraradical hyphae were uncoupled from host plant lifespan. Indeed, ERM spreading from roots of intact or shootless plants showed comparable levels of viability, similar structural traits and ability to establish mycorrhizal symbioses with new plants, as long as five months after shoot removal. Our findings expand the current knowledge on AMF biology and life cycle, providing data on ERM long-term survival in the soil of two Glomeracean species, functional to the prompt establishment of mycorrhizal symbioses and to the maintenance of soil biological fertility.
Naturally derived Heme-Oxygenase 1 inducers attenuate inflammatory responses in human dendritic cells and T cells: relevance for psoriasis treatment
Authors: Campbell Nicole K. , Fitzgerald Hannah K. , Malara Anna , Hambly Roisin , Sweeney Cheryl M. , Kirby Brian , Fletcher Jean M. , Dunne Aisling 
Published: July 2018

AbstractPsoriasis is a chronic autoimmune disease mediated by dysregulated immune responses in dendritic cells (DC) and T cells. The stress-response enzyme heme oxygenase-1 (HO-1) has been described as protective in animal models of psoriasis, however, implementation of HO-1-based therapies is hindered by the lack of clinically-suitable HO-1 inducers. The plant-derived polyphenols, carnosol and curcumin, have been identified as candidate HO-1 inducers however there has been little investigation into their effects on human immune cells. We demonstrate that treatment of human DC with these polyphenols limits DC maturation, reduces pro-inflammatory cytokine production, and prevents induction of allospecific T cell responses, in a manner partially dependent on carbon monoxide (CO). We also characterised their effects in ex-vivo psoriasis PBMC and report that curcumin, but not carnosol, strongly reduces T cell proliferation and cytokine poly-functionality, with reduced expression of psoriatic cytokines IFNγ, IL-17, GM-CSF and IL-22. This study therefore supports reports highlighting the therapeutic potential of curcumin in psoriasis by providing insight into its immunological effects on healthy human DC and psoriasis PBMC. We also demonstrate, for the first time, the anti-inflammatory effects of carnosol in human immune cells.
Microstructure characterization of BaSnO3 thin films on LaAlO3 and PrScO3 substrates from transmission electron microscopy
Authors: Yun Hwanhui , Ganguly Koustav , Postiglione William , Jalan Bharat , Leighton Chris , Mkhoyan K. Andre , Jeong Jong Seok 
Published: July 2018

AbstractDetailed microstructure analysis of epitaxial thin films is a vital step towards understanding essential structure-property relationships. Here, a combination of transmission electron microscopy (TEM) techniques is utilized to determine in detail the microstructure of epitaxial La-doped BaSnO3 films grown on two different perovskite substrates: LaAlO3 and PrScO3. These BaSnO3 films are of high current interest due to outstanding electron mobility at ambient. The rotational disorder of low-angle grain boundaries, namely the in-plane twist and out-of-plane tilt, is visualized by conventional TEM under a two-beam condition, and the degree of twists in grains of such films is quantified by selected-area electron diffraction. The investigation of the atomic arrangement near the film-substrate interfaces, using high-resolution annular dark-field scanning TEM imaging, reveals that edge dislocations with a Burgers vector along [001] result in the out-of-plane tilt. It is shown that such TEM-based analyses provide detailed information about the microstructure of the films, which, when combined with complimentary high-resolution X-ray diffraction, yields a complete structural characterization of the films. In particular, stark differences in out-of-plane tilt on the two substrates are shown to result from differences in misfit dislocation densities at the interface, explaining a puzzling observation from X-ray diffraction.
Geometric compensation applied to image analysis of cell populations with morphological variability: a new role for a classical concept
Authors: Figueiredo Joana , Rodrigues Isabel , Ribeiro João , Fernandes Maria Sofia , Melo Soraia , Sousa Bárbara , Paredes Joana , Seruca Raquel , Sanches João M. 
Published: July 2018

AbstractImmunofluorescence is the gold standard technique to determine the level and spatial distribution of fluorescent-tagged molecules. However, quantitative analysis of fluorescence microscopy images faces crucial challenges such as morphologic variability within cells. In this work, we developed an analytical strategy to deal with cell shape and size variability that is based on an elastic geometric alignment algorithm. Firstly, synthetic images mimicking cell populations with morphological variability were used to test and optimize the algorithm, under controlled conditions. We have computed expression profiles specifically assessing cell-cell interactions (IN profiles) and profiles focusing on the distribution of a marker throughout the intracellular space of single cells (RD profiles). To experimentally validate our analytical pipeline, we have used real images of cell cultures stained for E-cadherin, tubulin and a mitochondria dye, selected as prototypes of membrane, cytoplasmic and organelle-specific markers. The results demonstrated that our algorithm is able to generate a detailed quantitative report and a faithful representation of a large panel of molecules, distributed in distinct cellular compartments, independently of cell’s morphological features. This is a simple end-user method that can be widely explored in research and diagnostic labs to unravel protein regulation mechanisms or identify protein expression patterns associated with disease.
Nannochloropsis oceanica, a novel natural source of rumen-protected eicosapentaenoic acid (EPA) for ruminants
Authors: Alves Susana P. , Mendonça Sofia H. , Silva Joana L. , Bessa Rui J. B. 
Published: July 2018

AbstractWe hypothesize that whole microalga biomass is a natural rumen-protected source of eicosapentaenoic acid (EPA, 20:5n-3) for ruminants. To test our hypothesis, we studied the ruminal biohydrogenation of EPA from two microalgae, Nannochloropsis oceanica and Phaeodactylum tricornutum using in vitro incubations with rumen fluid. A total mixed ration was incubated with: no EPA (control), EPA as free-fatty acid, N. oceanica spray-dried (SD), N. oceanica freeze-dried (FD), or P. tricornutum FD. The kinetics of EPA disappearance and of products formed during the 24 hours of incubation were evaluated, and complemented by deuterated-EPA incubation. Results showed that EPA metabolism from the N. oceanica was remarkably reduced compared with the P. tricornutum and free-EPA, and this reduction was even more effective with the N. oceanica FD. Our data also indicates that neither feed dry matter disappearance nor rumen microbial markers (branched-chain fatty acids and dimethyl acetals) were affected by EPA-sources. We reported for the first time the kinetics of EPA biohydrogenation class products and the unequivocal formation of 20:0 from EPA. Overall, N. oceanica shows a strong potential to be used as a natural dietary source of EPA to ruminants, nevertheless further studies are needed to verify its protection in vivo.