bluuebunny/crossref_metadata_2025_split huggingface dataset:
Coevolution of teaching ability and cooperation in spatial evolutionary games
Authors: Zhang Shuhua , Zhang Zhipeng , Wu Yu’e , Li Yu , Xie Yunya 
Published: September 2018

AbstractIndividuals with higher reputation are able to spread their social strategies easily. At the same time, one’s reputation is changing according to his previous behaviors, which leads to completely different teaching abilities for players. To explore the effect of the teaching ability influenced by reputation, we consider a coevolutionary model in which the reputation score affects the updating rule in spatial evolutionary games. More precisely, the updating probability becomes bigger if his/her partner has a positive reputation. Otherwise, the updating probability becomes smaller. This simple design describes the influence of teaching ability on strategy adoption effectively. Numerical results focus on the proportion of cooperation under different levels of the amplitude of change of reputation and the range of reputation. For this dynamics, the fraction of cooperators presents a growth trend within a wide range of parameters. In addition, to validate the generality of this mechanism, we also employ the snowdrift game. Moreover, the evolution of cooperation on Erdős-Rényi random graph is studied for the prisoner’s dilemma game. Our results may be conducive to understanding the emergence and sustainability of cooperation during the strategy adoptions in reality.
Ultrafast Volumetric Optoacoustic Imaging of Whole Isolated Beating Mouse Heart
Authors: Lin Hsiao-Chun Amy , Déan-Ben Xosé Luís , Reiss Michael , Schöttle Verena , Wahl-Schott Christian A. , Efimov Igor R. , Razansky Daniel 
Published: September 2018

AbstractThe Langendorff-perfused heart technique has become the model of choice for multiparametric optical mapping of cardiac function and electrophysiology. However, photon scattering in tissues represents a significant drawback of the optical imaging approach, fundamentally limiting its mapping capacity to the heart surface. This work presents the first implementation of the optoacoustic approach for 4D imaging of the entire beating isolated mouse heart. The method combines optical excitation and acoustic detection to simultaneously render rich optical contrast and high spatio-temporal resolution at centimeter-scale depths. We demonstrate volumetric imaging of deeply located cardiac features, including the interventricular septum, chordae tendineae, and papillary muscles while further tracking the heart beat cycle and the motion of the pulmonary, mitral, and tricuspid valves in real time. The technique possesses a powerful combination between high imaging depth, fast volumetric imaging speed, functional and molecular imaging capacities not available with other imaging modalities currently used in cardiac research.
Cellular Depletion of BRD8 Causes p53-Dependent Apoptosis and Induces a DNA Damage Response in Non-Stressed Cells
Authors: Lashgari Anahita , Fauteux Myriam , Maréchal Alexandre , Gaudreau Luc 
Published: September 2018

AbstractRegulation of the chromatin state is crucial for biological processes such as the regulation of transcription, DNA replication, and DNA damage repair. Here we show that knockdown of the BRD8 bromodomain protein – a subunit of the p400/Tip60 complex - leads to p21 induction, and concomitant cell cycle arrest in G1/S. We further demonstrate that the p53 transcriptional pathway is activated in BRD8-depleted cells, and this accounts for upregulation of not only p21 but also of pro-apoptotic genes, leading to subsequent apoptosis. Importantly, the DNA damage response (DDR) is induced upon BRD8 depletion, and DNA damage foci are detectable in BRD8-depleted cells under normal growth conditions. Consistently with an activated DDR, we find that in BRD8-depleted cells, the ATM-CHK2 DDR pathway is turned on but, CHK1 proteins levels are severely reduced and replication stress is detectable as enhanced replication protein A (RPA32) phosphorylation levels. Notably, acetylation of histone H4 at K16 (H4K16ac) is reduced in BRD8-depleted cells, suggesting that BRD8 may have a role in the recruitment and/or stabilization of the p400/Tip60 complex within chromatin, thereby facilitating DNA repair. Taken together, our results suggest that BRD8 is involved not only in p53-dependent gene suppression, but also in the maintenance of genome stability.
CRISPR-typing PCR (ctPCR), a new Cas9-based DNA detection method
Authors: Wang Qiao , Zhang Beibei , Xu Xinhui , Long Feifei , Wang Jinke 
Published: September 2018

AbstractThis study develops a new method for detecting and typing target DNA based on Cas9 nuclease, which was named as ctPCR, representing Cas9-sgRNA- or CRISPR-typing PCR. The technique can detect and type target DNA easily, rapidly, specifically, and sensitively. This technique detects target DNA in three steps: (1) amplifying target DNA with PCR by using a pair of universal primers (PCR1); (2) treating PCR1 products with a process referred to as CAT, representing Cas9 cutting, A tailing and T adaptor ligation; (3) amplifying the CAT-treated DNA with PCR by using a pair of general-specific primers (gs-primers) (PCR2). This method was verified by detecting HPV16 and HPV18 L1 gene in 13 different high-risk human papillomavirus (HPV) subtypes. This method was also verified by detecting the L1 and E6-E7 genes of two high-risk HPVs (HPV16 and 18) in cervical carcinoma cells and many clinical samples. In this method, PCR1 was performed to determine if the detected DNA sample contained the target DNA (such as virus infection), while PCR2 was performed to discriminate which genotypic target DNA was present in the detected DNA sample (such as virus subtypes). Based on these proof-of-concept experiments, this study provides a new CRISPR/Cas9-based DNA detection and typing method.
Serralysin family metalloproteases protects Serratia marcescens from predation by the predatory bacteria Micavibrio aeruginosavorus
Authors: Garcia Carlos J. , Pericleous Androulla , Elsayed Mennat , Tran Michael , Gupta Shilpi , Callaghan Jake D. , Stella Nicholas A. , Franks Jonathan M. , Thibodeau Patrick H. , Shanks Robert M. Q. , Kadouri Daniel E. 
Published: September 2018

AbstractMicavibrio aeruginosavorus is an obligate Gram-negative predatory bacterial species that feeds on other Gram-negative bacteria by attaching to the surface of its prey and feeding on the prey’s cellular contents. In this study, Serratia marcescens with defined mutations in genes for extracellular cell structural components and secreted factors were used in predation experiments to identify structures that influence predation. No change was measured in the ability of the predator to prey on S. marcescens flagella, fimbria, surface layer, prodigiosin and phospholipase-A mutants. However, higher predation was measured on S. marcescens metalloprotease mutants. Complementation of the metalloprotease gene, prtS, into the protease mutant, as well as exogenous addition of purified serralysin metalloprotease, restored predation to wild type levels. Addition of purified serralysin also reduced the ability of M. aeruginosavorus to prey on Escherichia coli. Incubating M. aeruginosavorus with purified metalloprotease was found to not impact predator viability; however, pre-incubating prey, but not the predator, with purified metalloprotease was able to block predation. Finally, using flow cytometry and fluorescent microscopy, we were able to confirm that the ability of the predator to bind to the metalloprotease mutant was higher than that of the metalloprotease producing wild-type. The work presented in this study shows that metalloproteases from S. marcescens could offer elevated protection from predation.
Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance
Authors: Song Eun-Ah Christine , Min Sangwon , Oyelakin Akinsola , Smalley Kirsten , Bard Jonathan E. , Liao Lan , Xu Jianming , Romano Rose-Anne 
Published: September 2018

AbstractStem and progenitor cells of the submandibular salivary gland (SMG) give rise to, maintain, and regenerate the multiple lineages of mature epithelial cells including those belonging to the ductal, acinar, basal and myoepithelial subtypes. Here we have exploited single cell RNA-sequencing and in vivo genetic lineage tracing technologies to generate a detailed map of the cell fate trajectories and branch points of the basal and myoepithelial cell populations of the mouse SMG during embryonic development and in adults. Our studies show that the transcription factor p63 and alpha-smooth muscle actin (SMA) serve as faithful markers of the basal and myoepithelial cell lineages, respectively and that both cell types are endowed with progenitor cell properties. However, p63+ basal and SMA+ myoepithelial cells exhibit distinct cell fates by virtue of maintaining different cellular lineages during morphogenesis and in adults. Collectively, our results reveal the dynamic and complex nature of the diverse SMG cell populations and highlight the distinct differentiation potential of the p63 and SMA expressing subtypes in the stem and progenitor cell hierarchy. Long term these findings have profound implications towards a better understanding of the molecular mechanisms that dictate lineage commitment and differentiation programs during development and adult gland maintenance.
White matter aberrations and age-related trajectories in patients with schizophrenia and bipolar disorder revealed by diffusion tensor imaging
Authors: Tønnesen Siren , Kaufmann Tobias , Doan Nhat Trung , Alnæs Dag , Córdova-Palomera Aldo , Meer Dennis van der , Rokicki Jaroslav , Moberget Torgeir , Gurholt Tiril P. , Haukvik Unn K. , Ueland Torill , Lagerberg Trine Vik , Agartz Ingrid , Andreassen Ole A. , Westlye Lars T. 
Published: September 2018

AbstractSupported by histological and genetic evidence implicating myelin, neuroinflammation and oligodendrocyte dysfunction in schizophrenia spectrum disorders (SZ), diffusion tensor imaging (DTI) studies have consistently shown white matter (WM) abnormalities when compared to healthy controls (HC). The diagnostic specificity remains unclear, with bipolar disorders (BD) frequently conceptualized as a less severe clinical manifestation along a psychotic spectrum. Further, the age-related dynamics and possible sex differences of WM abnormalities in SZ and BD are currently understudied. Using tract-based spatial statistics (TBSS) we compared DTI-based microstructural indices between SZ (n = 128), BD (n = 61), and HC (n = 293). We tested for age-by-group and sex-by-group interactions, computed effect sizes within different age-bins and within genders. TBSS revealed global reductions in fractional anisotropy (FA) and increases in radial (RD) diffusivity in SZ compared to HC, with strongest effects in the body and splenium of the corpus callosum, and lower FA in SZ compared to BD in right inferior longitudinal fasciculus and right inferior fronto-occipital fasciculus, and no significant differences between BD and HC. The results were not strongly dependent on age or sex. Despite lack of significant group-by-age interactions, a sliding-window approach supported widespread WM involvement in SZ with most profound differences in FA from the late 20 s.
Deep-Ultraviolet Photodetectors Based on Epitaxial ZnGa2O4 Thin Films
Authors: Tsai Si-Han , Basu Sarbani , Huang Chiung-Yi , Hsu Liang-Ching , Lin Yan-Gu , Horng Ray-Hua 
Published: September 2018

AbstractA single-crystalline ZnGa2O4 epilayer was successfully grown on c-plane (0001) sapphire substrate by metal-organic chemical vapor deposition. This epilayer was used as a ternary oxide semiconductor for application in high-performance metal–semiconductor–metal photoconductive deep-ultraviolet (DUV) photodetectors (PDs). At a bias of 5 V, the annealed ZnGa2O4 PDs showed better performance with a considerably low dark current of 1 pA, a responsivity of 86.3 A/W, cut-off wavelength of 280 nm, and a high DUV-to-visible discrimination ratio of approximately 107 upon exposure to 230 nm DUV illumination than that of as-grown ZnGa2O4 PDs. The as-grown PDs presented a dark current of 0.5 mA, a responsivity of 2782 A/W at 230 nm, and a photo-to-dark current contrast ratio of approximately one order. The rise time of annealed PDs was 0.5 s, and the relatively quick decay time was 0.7 s. The present results demonstrate that annealing process can reduce the oxygen vacancy defects and be potentially applied in ZnGa2O4 film-based DUV PD devices, which have been rarely reported in previous studies.
Importance of integrity of cell-cell junctions for the mechanics of confluent MDCK II cells
Authors: Brückner Bastian Rouven , Janshoff Andreas 
Published: September 2018

AbstractIntercellular junctions are important mechanical couplers between cells in epithelial layers providing adhesion and intercellular communication. Regulation of the junctions occurs in cellular processes such as layer formation, epithelial-to-mesenchymal transition, embryogenesis, and cancer progression. Many studies addressed the role of force generation in cells for establishing lateral cell-cell junctions and the role of cellular force transmission in tissue formation and maintenance. Our atomic force microscopy- (AFM) based study shed light on the role of both, tight junctions and adherens junctions for the mechanical properties of individual epithelial cells that are part of a confluent monolayer. We found that tight junctions are important for the establishment of a functional barrier-forming layer but impairing them does not reduce the mechanical integrity of cells. Depletion of ZO-1 results in a weak increase in cortical tension. An opposite effect was observed for disruption of E-cadherin-mediated adherens junctions using DTT. Opening of adherens junctions leads to substantial alterations of cellular mechanics such as reduced overall stiffness, but these changes turned out to be reversible after re-establishing disulfide bridges in E-cadherin by removal of DTT. We found that regulatory mechanisms exist that preserve mechanical integrity during recovery of disrupted adherens junctions.
Electrochemical detection of dopamine using periodic cylindrical gold nanoelectrode arrays
Authors: Kim Da-Seul , Kang Ee-Seul , Baek Seungho , Choo Sung-Sik , Chung Yong-Ho , Lee Donghyun , Min Junhong , Kim Tae-Hyung 
Published: September 2018

AbstractDopamine is a key molecule in neurotransmission and has been known to be responsible for several neurological diseases. Hence, its sensitive and selective detection is important for the early diagnosis of diseases related to abnormal levels of dopamine. In this study, we reported a new cylindrical gold nanoelectrode (CAuNE) platform fabricated via sequential laser interference lithography and electrochemical deposition. Among the fabricated electrodes, CAuNEs with a diameter of 700 nm, 150 s deposited, was found to be the best for electrochemical dopamine detection. According to cyclic voltammetry results, the linear range of the CAuNE-700 nm was 1–100 µM of dopamine with a limit of detection (LOD) of 5.83 µM. Moreover, owing to the homogeneous periodic features of CAuNEs, human neural cells were successfully cultured and maintained for more than 5 daysin vitrowithout the use of any extracellular matrix proteins and dopamine was detectable in the presence of these cells on the electrode. Therefore, we concluded that the developed dopamine sensing platform CAuNE can be used for many applications including early diagnosis of neurological diseases; function tests of dopaminergic neurons derived from various stem cell sources; and toxicity assessments of drugs, chemicals, and nanomaterials on human neuronal cells.
Prognostic significance of vitamin D receptor (VDR) gene polymorphisms in liver cirrhosis
Authors: Triantos Christos , Aggeletopoulou Ioanna , Kalafateli Maria , Spantidea Panagiota I. , Vourli Georgia , Diamantopoulou Georgia , Tapratzi Dimitra , Michalaki Marina , Manolakopoulos Spilios , Gogos Charalambos , Kyriazopoulou Venetsana , Mouzaki Athanasia , Thomopoulos Konstantinos 
Published: September 2018

AbstractSeveral polymorphisms in the vitamin D receptor (VDR) are associated with the occurrence of chronic liver disease. Here, we investigated the association between BsmI, ApaI, TaqI and FokI VDR polymorphisms and the severity of liver cirrhosis in relation to serum cytokine and lipopolysaccharide binding protein (LBP) levels and their role on survival in cirrhotic patients. We found that patients harboring the BB genotype had higher MELD score, and they were mainly at CP stage C; patients harboring the AA genotype had increased LBP, IL-1β and IL-8 levels, and they were mostly at CP stage C; TT genotype carriers had higher MELD score and they were mainly at CP stage C and FF genotype carriers had lower IL-1β levels when compared to Bb/bb, Aa/aa, Tt/tt and Ff/ff genotypes respectively. In the multivariate analysis ApaI, BsmI and TaqI polymorphisms were independently associated with liver cirrhosis severity. In the survival analysis, the independent prognostic factors were CP score, MELD and the FF genotype. Our results indicate that the ApaI, TaqI and BsmI polymorphisms are associated with the severity of liver cirrhosis, through the immunoregulatory process. Survival is related to the FF genotype of FokI polymorphism, imparting a possible protective role in liver cirrhosis.
Genetic variant in IL-32 is associated with the ex vivo cytokine production of anti-TNF treated PBMCs from rheumatoid arthritis patients
Authors: Damen Michelle S. M. A. , Schraa Kiki , Tweehuysen Lieke , den Broeder Alfons A. , Netea Mihai G. , Popa Calin D. , Joosten Leo A. B. 
Published: September 2018

AbstractAbout 60% of RA patients don’t achieve good response with biological disease-modifying anti-rheumatic drugs bDMARD treatment (including TNF inhibitors, TNFi’s). Previously, a link between TNFα and interleukin (IL)-32 was reported in RA. However, the exact mechanism linking IL-32 to response to treatment as not been studied yet. Therefore, we explored the influence of a promoter single nucleotide polymorphism (SNP) rs4786370 in IL-32 on clinical responsiveness to TNFi’s in RA patients, potentially serving as new biomarker in RA. Expression of pro-inflammatory cytokines by peripheral mononuclear cells (PBMCs) from RA patients and healthy individuals were studied. Moreover, “ex vivo response” and clinical response to anti-TNFα therapy (etanercept, adalimumab) were measured and stratified for the IL-32 SNP. Higher IL-32 protein production was observed in RA patients. Additionally, patients bearing the CC genotype showed higher IL-32 protein and cytokine expression. DAS28 was independent of the promoter SNP, however, the “ex vivo” cytokine response was not. IL-32 mRNA and protein production was higher in RA patients, with a trend towards higher concentrations in patients bearing the CC genotype. Furthermore, genotype dependent IL-1 beta production might predict clinical response to etanercept/adalimumab. This indicates that IL-32 could play a role in predicting response to treatment in RA.
Facile reduction of graphene oxide suspensions and films using glass wafers
Authors: Rabchinskii Maxim K. , Dideikin Arthur T. , Kirilenko Demid A. , Baidakova Marina V. , Shnitov Vladimir V. , Roth Friedrich , Konyakhin Sergei V. , Besedina Nadezhda A. , Pavlov Sergei I. , Kuricyn Roman A. , Lebedeva Natalie M. , Brunkov Pavel N. , Vul’ Alexander Ya. 
Published: September 2018

AbstractThis paper reports a facile and green method for conversion of graphene oxide (GO) into graphene by low-temperature heating (80 °C) in the presence of a glass wafer. Compared to conventional GO chemical reduction methods, the presented approach is easy-scalable, operationally simple, and based on the use of a non-toxic recyclable deoxygenation agent. The efficiency of the proposed method is further expanded by the fact that it can be applied for reducing both GO suspensions and large-scale thin films formed on various substrates prior to the reduction process. The quality of the obtained reduced graphene oxide (rGO) strongly depends on the type of the used glass wafer, and, particularly, magnesium silicate glass can provide rGO with the C/O ratio of 7.4 and conductivity of up to 33000 S*cm−1. Based on the data obtained, we have suggested a mechanism of the observed reduction process in terms of the hydrolysis of the glass wafer with subsequent interaction of the leached alkali and alkali earth cations and silicate anions with graphene oxide, resulting in elimination of the oxygen-containing groups from the latter one. The proposed approach can be efficiently used for low-cost bulk-quantity production of graphene and graphene-based materials for a wide field of applications.
Intermittent hypoxia regulates vasoactive molecules and alters insulin-signaling in vascular endothelial cells
Authors: Sharma Pragya , Dong Yu , Somers Virend K. , Peterson Timothy E. , Zhang Yuebo , Wang Shihan , Li Guangxi , Singh Prachi 
Published: September 2018

AbstractVascular dysfunction and insulin resistance (IR) are associated with obstructive sleep apnea (OSA), which is characterized by frequent episodes of nocturnal intermittent hypoxia (IH). While it is recognized that the balance between vasoconstrictive (endothelin-1) and vasodilatory molecules (nitric oxide, NO) determine vascular profile, molecular mechanisms contributing to vascular dysfunction and IR in OSA are not completely understood. Caveolin-1 is a membrane protein which regulates endothelial nitric oxide synthase (eNOS) activity which is responsible for NO generation and cellular insulin-signaling. Hence, we examined the effects of IH on caveolin-1, eNOS, and endothelin-1 in human coronary artery endothelial cells in the context of IR. Chronic 3-day IH exposure up-regulated caveolin-1 and endothelin-1 expression while reducing NO. Also, IH altered insulin-mediated activation of AKT but not ERK resulting in increased endothelin-1 transcription. Similarly, caveolin-1 overexpression attenuated basal and insulin-stimulated NO synthesis along with impaired insulin-dependent activation of AKT and eNOS, with no effect on insulin-stimulated ERK1/2 phosphorylation and endothelin-1 transcription. Our data suggest that IH contributes to a vasoconstrictive profile and to pathway-selective vascular IR, whereby insulin potentiates ET-1 expression. Moreover, IH may partly mediate its effects on NO and insulin-signaling via upregulating caveolin-1 expression.
Plasmon-induced hot electron transfer in AgNW@TiO2@AuNPs nanostructures
Authors: Cheng Jiaji , Li Yiwen , Plissonneau Marie , Li Jiagen , Li Junzi , Chen Rui , Tang Zikang , Pautrot-d’Alençon Lauriane , He Tingchao , Tréguer-Delapierre Mona , Delville Marie-Hélène 
Published: September 2018

AbstractCompared to the limited absorption cross-section of conventional photoactive TiO2 nanoparticles (NPs), plasmonic metallic nanoparticles can efficiently convert photons from an extended spectrum range into energetic carriers because of the localized surface plasmon resonance (LSPR). Using these metal oxide semiconductors as shells for plasmonic nanoparticles (PNPs) that absorb visible light could extend their applications. The photophysics of such systems is performed using transient absorption measurements and steady extinction simulations and shows that the plasmonic energy transfer from the AgNWs core to the TiO2 shell results from a hot carrier injection process. Lifetimes obtained from photobleaching decay dynamics suggest that (i) the presence of gold nanoparticles (AuNPs) in AgNWs@TiO2@AuNPs systems can further promote the hot carrier transfer process via plasmonic coupling effects and (ii) the carrier dynamics is greatly affected by the shell thickness of TiO2. This result points out a definite direction to design appropriate nanostructures with tunable charge transfer processes toward photo-induced energy conversion applications.