bluuebunny/crossref_metadata_2025_split huggingface dataset:
Detecting topology freezing transition temperature of vitrimers by AIE luminogens
Authors: Yang Yang , Zhang Shuai , Zhang Xiqi , Gao Longcheng , Wei Yen , Ji Yan 
Published: July 2019

AbstractVitrimers are one kind of covalently crosslinked polymers that can be reprocessed. Topology freezing transition temperature (Tv) is vitrimer’s upper limit temperature for service and lower temperature for recycle. However, there has been no proper method to detect the intrinsic Tv till now. Even worse, current testing methods may lead to a misunderstanding of vitrimers. Here we provide a sensitive and universal method by doping or swelling aggregation-induced-emission (AIE) luminogens into vitrimers. The fluorescence of AIE-luminogens changes dramatically below and over Tv, providing an accurate method to measure Tv without the interference of external force. Moreover, according to this method, Tv is independent of catalyst loading. The opposite idea has been kept for a long time. This method not only is helpful for the practical application of vitrimers so as to reduce white wastes, but also may facilitate deep understanding of vitrimers and further development of functional polymer materials.
A multi-lock inhibitory mechanism for fine-tuning enzyme activities of the HECT family E3 ligases
Authors: Wang Zhen , Liu Ziheng , Chen Xing , Li Jingyu , Yao Weiyi , Huang Shijing , Gu Aihong , Lei Qun-Ying , Mao Ying , Wen Wenyu 
Published: July 2019

AbstractHECT E3 ligases control the degradation and functioning of numerous oncogenic/tumor-suppressive factors and signaling proteins, and their activities must be tightly regulated to prevent cancers and other diseases. Here we show that the Nedd4 family HECT E3 WWP1 adopts an autoinhibited state, in which its multiple WW domains sequester HECT using a multi-lock mechanism. Removing WW2 or WW34 led to a partial activation of WWP1. The structure of fully inhibited WWP1 reveals that many WWP1 mutations identified in cancer patients result in a partially active state with increased E3 ligase activity, and the WWP1 mutants likely promote cell migration by enhancement of ∆Np63α degradation. We further demonstrate that WWP2 and Itch utilize a highly similar multi-lock autoinhibition mechanism as that utilized by WWP1, whereas Nedd4/4 L and Smurf2 utilize a slightly variant version. Overall, these results reveal versatile autoinhibitory mechanisms that fine-tune the ligase activities of the HECT family enzymes.
mTORC1 and PKB/Akt control the muscle response to denervation by regulating autophagy and HDAC4
Authors: Castets Perrine , Rion Nathalie , Théodore Marine , Falcetta Denis , Lin Shuo , Reischl Markus , Wild Franziska , Guérard Laurent , Eickhorst Christopher , Brockhoff Marielle , Guridi Maitea , Ibebunjo Chikwendu , Cruz Joseph , Sinnreich Michael , Rudolf Rüdiger , Glass David J. , Rüegg Markus A. 
Published: July 2019

AbstractLoss of innervation of skeletal muscle is a determinant event in several muscle diseases. Although several effectors have been identified, the pathways controlling the integrated muscle response to denervation remain largely unknown. Here, we demonstrate that PKB/Akt and mTORC1 play important roles in regulating muscle homeostasis and maintaining neuromuscular endplates after nerve injury. To allow dynamic changes in autophagy, mTORC1 activation must be tightly balanced following denervation. Acutely activating or inhibiting mTORC1 impairs autophagy regulation and alters homeostasis in denervated muscle. Importantly, PKB/Akt inhibition, conferred by sustained mTORC1 activation, abrogates denervation-induced synaptic remodeling and causes neuromuscular endplate degeneration. We establish that PKB/Akt activation promotes the nuclear import of HDAC4 and is thereby required for epigenetic changes and synaptic gene up-regulation upon denervation. Hence, our study unveils yet-unknown functions of PKB/Akt-mTORC1 signaling in the muscle response to nerve injury, with important implications for neuromuscular integrity in various pathological conditions.
Co-option of neurotransmitter signaling for inter-organismal communication in C. elegans
Authors: Chute Christopher D. , DiLoreto Elizabeth M. , Zhang Ying K. , Reilly Douglas K. , Rayes Diego , Coyle Veronica L. , Choi Hee June , Alkema Mark J. , Schroeder Frank C. , Srinivasan Jagan 
Published: July 2019

AbstractBiogenic amine neurotransmitters play a central role in metazoan biology, and both their chemical structures and cognate receptors are evolutionarily conserved. Their primary roles are in cell-to-cell signaling, as biogenic amines are not normally recruited for communication between separate individuals. Here, we show that in the nematode C. elegans, a neurotransmitter-sensing G protein-coupled receptor, TYRA-2, is required for avoidance responses to osas#9, an ascaroside pheromone that incorporates the neurotransmitter, octopamine. Neuronal ablation, cell-specific genetic rescue, and calcium imaging show that tyra-2 expression in the nociceptive neuron, ASH, is necessary and sufficient to induce osas#9 avoidance. Ectopic expression in the AWA neuron, which is generally associated with attractive responses, reverses the response to osas#9, resulting in attraction instead of avoidance behavior, confirming that TYRA-2 partakes in the sensing of osas#9. The TYRA-2/osas#9 signaling system represents an inter-organismal communication channel that evolved via co-option of a neurotransmitter and its cognate receptor.
HARCI-EU, a harmonized gridded dataset of critical infrastructures in Europe for large-scale risk assessments
Authors: Batista e Silva Filipe , Forzieri Giovanni , Marin Herrera Mario Alberto , Bianchi Alessandra , Lavalle Carlo , Feyen Luc 
Published: July 2019

AbstractCritical infrastructures (CIs) are assets, systems, or parts thereof that are essential for the maintenance of socioeconomic functions, health, safety and well-being of people. The exposure of CIs to natural and man-made hazards poses a risk to the economy and society. The spatial distribution of CIs and their economic value are a prerequisite for quantifying risk and planning suitable protection and adaptation measures. However, the incompleteness and inconsistency of existing information on CIs hamper their integration into large-scale risk frameworks. We present here the ‘HARmonized grids of Critical Infrastructures in EUrope’ (HARCI-EU) dataset. It represents major CIs in the transport, energy, industry and social sectors at 1 km2 expressed in sector-specific, economically-relevant units. The HARCI-EU grids were produced by integrating geospatial and statistical data from multiple sources. Correlation analysis performed against independent metrics corroborates the approach showing average Pearson coefficients ranging between 0.61 and 0.95 across the sectors. HARCI-EU provides a consistent mapping of CIs in key sectors that can serve as exposure information for large-scale risk assessments in Europe.
The Young-Feynman controlled double-slit electron interference experiment
Authors: Tavabi Amir H. , Boothroyd Chris B. , Yücelen Emrah , Frabboni Stefano , Gazzadi Gian Carlo , Dunin-Borkowski Rafal E. , Pozzi Giulio 
Published: July 2019

AbstractThe key features of quantum mechanics are vividly illustrated by the Young-Feynman two-slit thought experiment, whose second part discusses the recording of an electron distribution with one of the two slits partially or totally closed by an aperture. Here, we realize the original Feynman proposal in a modern electron microscope equipped with a high brightness gun and two biprisms, with one of the biprisms used as a mask. By exciting the microscope lenses to conjugate the biprism plane with the slit plane, observations are carried out in the Fraunhofer plane with nearly ideal control of the covering of one of the slits. A second, new experiment is also presented, in which interference phenomena due to partial overlap of the slits are observed in the image plane. This condition is obtained by inserting the second biprism between the two slits and the first biprism and by biasing it in order to overlap their images.
Pneumatic actuator and flexible piezoelectric sensor for soft virtual reality glove system
Authors: Song Kahye , Kim Sung Hee , Jin Sungho , Kim Sohyun , Lee Sunho , Kim Jun-Sik , Park Jung-Min , Cha Youngsu 
Published: July 2019

AbstractThe desire to directly touch and experience virtual objects led to the development of a tactile feedback device. In this paper, a novel soft pneumatic actuator for providing tactile feedback is proposed and demonstrated. The suggested pneumatic actuator does not use an external air compressor but it is operated by internal air pressure generated by an electrostatic force. By using the actuator, we designed a glove to interact with virtual reality. The finger motions are detected by attached flexible piezoelectric sensors and transmitted to a virtual space through Bluetooth for interconnecting with a virtual hand. When the virtual finger touches the virtual object, the actuators are activated and give the tactile feedback to the real fingertip. The glove is made of silicone rubber material and integrated with the sensors and actuators such that users can wear them conveniently with light weight. This device was tested in a virtual chess board program, wherein the user picked up virtual chess pieces successfully.
Androgen receptor signalling in the male adrenal facilitates X-zone regression, cell turnover and protects against adrenal degeneration during ageing
Authors: Gannon Anne-Louise , O’Hara Laura , Mason J. Ian , Jørgensen Anne , Frederiksen Hanne , Milne Laura , Smith Sarah , Mitchell Rod T. , Smith Lee B. 
Published: July 2019

AbstractAndrogens are known to be an essential regulator of male health. Androgen receptor (AR) is widely expressed throughout the adrenal cortex, yet the wider role for androgen signalling in the adrenal remains underexplored. To investigate AR-dependent and AR-independent androgen signalling in the adrenal, we used a novel mouse model with a specific ablation of androgen receptor in the adrenal cortex with or without reduction of circulating androgen levels by castration. Our results describe AR expression in the human and mouse adrenal and highlight that the mouse is a viable model to investigate androgen signalling in the adrenal cortex. We show androgen signalling via AR is required for X-zone regression during puberty. Furthermore, cortex measurements define differences in X-zone morphology depending on whether circulating androgens or AR have been removed. We show androgens promote both cortical cell differentiation and apoptosis but are dispensable for the formation of the definitive cortex. Additionally, investigation of aged mice with AR ablation reveals severe cortex disruption, spindle cell hyperplasia and X-zone expansion. The data described herein demonstrates AR-signalling is required to facilitate X-zone regression, cell clearance and to protect against adrenal degeneration during ageing.
Anti-apoptotic activity of ETB receptor agonist, IRL-1620, protects neural cells in rats with cerebral ischemia
Authors: Briyal Seema , Ranjan Amaresh K. , Hornick Mary G. , Puppala Anupama K. , Luu Thanh , Gulati Anil 
Published: July 2019

AbstractEndothelin-B receptor agonist, IRL-1620, provides significant neuroprotection following cerebral ischemia in rats. Whether this neuroprotection is due to inhibition of apoptosis is unknown. IRL-1620-treated rats following permanent middle cerebral artery occlusion (MCAO) showed significant improvement in neurological and motor functions along with a decrease in infarct volume at 24 h (−81.3%) and day 7 (−73.0%) compared to vehicle group. Cerebral blood flow (CBF) significantly improved in IRL-1620-treated animals compared to vehicle by day 7 post MCAO. IRL-1620-treated rats showed an increase in phospho-Akt and decrease in Bad level 7 h post-occlusion compared to vehicle, while Akt and Bad expression was similar in cerebral hemispheres at 24 h post-MCAO. The phospho-Bad level was lower in vehicle- but not in IRL-1620-treated rats at 24 h. Anti-apoptotic Bcl-2 expression decreased, while pro-apoptotic Bax expression increased in vehicle-treated MCAO rats, these changes were attenuated (P < 0.01) by IRL-1620. Mitochondrial membrane-bound Bax intensity significantly decreased in IRL-1620 compared to vehicle-treated MCAO rats. IRL-1620 treatment reduced (P < 0.001) the number of TUNEL-positive cells compared to vehicle at 24 h and day 7 post MCAO. The results demonstrate that IRL-1620 is neuroprotective and attenuates neural damage following cerebral ischemia in rats by increasing CBF and reducing apoptosis.
Actin depolymerization is able to increase plant resistance against pathogens via activation of salicylic acid signalling pathway
Authors: Leontovyčová Hana , Kalachova Tetiana , Trdá Lucie , Pospíchalová Romana , Lamparová Lucie , Dobrev Petre I. , Malínská Kateřina , Burketová Lenka , Valentová Olga , Janda Martin 
Published: July 2019

AbstractThe integrity of the actin cytoskeleton is essential for plant immune signalling. Consequently, it is generally assumed that actin disruption reduces plant resistance to pathogen attack. Here, we demonstrate that actin depolymerization induced a dramatic increase in salicylic acid (SA) levels in Arabidopsis thaliana. Transcriptomic analysis showed that the SA pathway was activated due to the action of isochorismate synthase (ICS). The effect was also confirmed in Brassica napus. This raises the question of whether actin depolymerization could, under particular conditions, lead to increased resistance to pathogens. Thus, we explored the effect of pretreatment with actin-depolymerizing drugs on the resistance of Arabidopsis thaliana to the bacterial pathogen Pseudomonas syringae, and on the resistance of an important crop Brassica napus to its natural fungal pathogen Leptosphaeria maculans. In both pathosystems, actin depolymerization activated the SA pathway, leading to increased plant resistance. To our best knowledge, we herein provide the first direct evidence that disruption of the actin cytoskeleton can actually lead to increased plant resistance to pathogens, and that SA is crucial to this process.
Endothelial tip cells in vitro are less glycolytic and have a more flexible response to metabolic stress than non-tip cells
Authors: Yetkin-Arik B. , Vogels I. M. C. , Neyazi N. , van Duinen V. , Houtkooper R. H. , van Noorden C. J. F. , Klaassen I. , Schlingemann R. O. 
Published: July 2019

AbstractFormation of new blood vessels by differentiated endothelial tip cells, stalk cells, and phalanx cells during angiogenesis is an energy-demanding process. How these specialized endothelial cell phenotypes generate their energy, and whether there are differences between these phenotypes, is unknown. This may be key to understand their functions, as (1) metabolic pathways are essentially involved in the regulation of angiogenesis, and (2) a metabolic switch has been associated with angiogenic endothelial cell differentiation. With the use of Seahorse flux analyses, we studied metabolic pathways in tip cell and non-tip cell human umbilical vein endothelial cell populations. Our study shows that both tip cells and non-tip cells use glycolysis as well as mitochondrial respiration for energy production. However, glycolysis is significantly lower in tip cells than in non-tip cells. Additionally, tip cells have a higher capacity to respond to metabolic stress. Finally, in non-tip cells, blocking of mitochondrial respiration inhibits endothelial cell proliferation. In conclusion, our data demonstrate that tip cells are less glycolytic than non-tip cells and that both endothelial cell phenotypes can adapt their metabolism depending on microenvironmental circumstances. Our results suggest that a balanced involvement of metabolic pathways is necessary for both endothelial cell phenotypes for proper functioning during angiogenesis.
Identifying potential drug targets in hepatocellular carcinoma based on network analysis and one-class support vector machine
Authors: Tong Zhan , Zhou Yuan , Wang Juan 
Published: July 2019

AbstractHepatocellular carcinoma (HCC) is one major cause of cancer-related death worldwide. But now, the systematic therapy for the advanced stages of HCC is rather limited. Thus, the discovery of novel drug targets and thereafter targeted drugs against HCC is continuously needed. In this study, we combined clinical association data, gene expression profiles and manually collected drug target genes with the human protein-protein interaction (PPI) network to establish an in-silico HCC drug target predictor. First, we found drug target genes (DTGs), disease-associated genes (DAGs), prognostic unfavorable genes (PUGs) and cancer up-regulated genes (URGs) have higher degree, betweenness, closeness centrality, while cancer down-regulated genes (DRGs), prognostic favorable genes (PFGs) have lower degrees, in comparison with background genes. Moreover, DTG nodes were shown to be closer to DAG, PUG and URG nodes, but farther away from PFG and DRG nodes. Compared to the background, PFGs and DRGs were shown to have relatively bigger genetic dependency scores, while PUGs and URGs have smaller genetic dependency scores. Finally, based on the observed features of DTGs, we constructed a drug target predictor using one-class support vector machine (one-class SVM). Performance evaluation results suggested our predictor could effectively identify putative drug target genes for further research.
Atomic scale study of stress-induced misaligned subsurface layers in KDP crystals
Authors: Hu Yue , Zhu Zhen , Xiao Jiamin , Shao Hezhu , Zhao Li , Xu Min , Zhuang Jun 
Published: July 2019

AbstractWe carried out ab initio calculations to study the atomic configuration, band structure and optical absorption of the lattice misalignment structure (LMS) in a subsurface layer of a machined KH2PO4 (KDP) crystal. By varying the different degrees of misalignment, the changes in the corresponding atomic position and bond and energy are obtained, and their correlations are analysed in detail. The results indicate that in the LMS evolution, the variation in the proton distribution around the oxygen atoms plays an important role, and many local stable LMSs appear. Interestingly, at a certain misalignment value, the total system energy of the local stable LMS is near that of a perfect KDP crystal. For some local stable LMSs, the electronic and optical properties related to the laser damage threshold (LDT) of KDP are further studied. The results show that in comparison with a perfect KDP crystal, the band gaps of local stable LMSs at some certain misalignment values become narrow, and their optical absorption curves produce an obvious redshift. These facts demonstrate that the emergence of the LMS could have a significant impact on the optical absorption of the KDP material and thus affect the LDT of KDP under certain working conditions.
Speech perception is similar for musicians and non-musicians across a wide range of conditions
Authors: Madsen Sara M. K. , Marschall Marton , Dau Torsten , Oxenham Andrew J. 
Published: July 2019

AbstractIt remains unclear whether musical training is associated with improved speech understanding in a noisy environment, with different studies reaching differing conclusions. Even in those studies that have reported an advantage for highly trained musicians, it is not known whether the benefits measured in laboratory tests extend to more ecologically valid situations. This study aimed to establish whether musicians are better than non-musicians at understanding speech in a background of competing speakers or speech-shaped noise under more realistic conditions, involving sounds presented in space via a spherical array of 64 loudspeakers, rather than over headphones, with and without simulated room reverberation. The study also included experiments testing fundamental frequency discrimination limens (F0DLs), interaural time differences limens (ITDLs), and attentive tracking. Sixty-four participants (32 non-musicians and 32 musicians) were tested, with the two groups matched in age, sex, and IQ as assessed with Raven’s Advanced Progressive matrices. There was a significant benefit of musicianship for F0DLs, ITDLs, and attentive tracking. However, speech scores were not significantly different between the two groups. The results suggest no musician advantage for understanding speech in background noise or talkers under a variety of conditions.
Validation of quantum adiabaticity through non-inertial frames and its trapped-ion realization
Authors: Hu Chang-Kang , Cui Jin-Ming , Santos Alan C. , Huang Yun-Feng , Li Chuan-Feng , Guo Guang-Can , Brito Frederico , Sarandy Marcelo S. 
Published: July 2019

AbstractValidity conditions for the adiabatic approximation are useful tools to understand and predict the quantum dynamics. Remarkably, the resonance phenomenon in oscillating quantum systems has challenged the adiabatic theorem. In this scenario, inconsistencies in the application of quantitative adiabatic conditions have led to a sequence of new approaches for adiabaticity. Here, by adopting a different strategy, we introduce a validation mechanism for the adiabatic approximation by driving the quantum system to a non-inertial reference frame. More specifically, we begin by considering several relevant adiabatic approximation conditions previously derived and show that all of them fail by introducing a suitable oscillating Hamiltonian for a single quantum bit (qubit). Then, by evaluating the adiabatic condition in a rotated non-inertial frame, we show that all of these conditions, including the standard adiabatic condition, can correctly describe the adiabatic dynamics in the original frame, either far from resonance or at a resonant point. Moreover, we prove that this validation mechanism can be extended for general multi-particle quantum systems, establishing the conditions for the equivalence of the adiabatic behavior as described in inertial or non-inertial frames. In order to experimentally investigate our method, we consider a hyperfine qubit through a single trapped Ytterbium ion 171Yb+, where the ion hyperfine energy levels are used as degrees of freedom of a two-level system. By monitoring the quantum evolution, we explicitly show the consistency of the adiabatic conditions in the non-inertial frame.
Microanatomy of the stem-turtle Pappochelys rosinae indicates a predominantly fossorial mode of life and clarifies early steps in the evolution of the shell
Authors: Schoch Rainer R. , Klein Nicole , Scheyer Torsten M. , Sues Hans-Dieter 
Published: July 2019

AbstractUnlike any other tetrapod, turtles form their dorsal bony shell (carapace) not from osteoderms, but by contribution of the ribs and vertebrae that expand into the dermis to form plate-like shell components. Although this was known from embryological studies in extant turtles, important steps in this evolutionary sequence have recently been highlighted by the Triassic taxa Pappochelys, Eorhynchochelys and Odontochelys, and the Permian Eunotosaurus. The discovery of Pappochelys shed light on the origin of the ventral bony shell (plastron), which formed from enlarged gastralia. A major question is whether the turtle shell evolved in the context of a terrestrial or aquatic environment. Whereas Odontochelys was controversially interpreted as aquatic, a terrestrial origin of turtles was proposed based on evidence of fossorial adaptations in Eunotosaurus. We report palaeohistological data for Pappochelys, a taxon that exemplifies earlier evolutionary stages in the formation of the bony shell than Odontochelys. Bone histological evidence reveals (1) evolutionary changes in bone microstructure in ribs and gastralia approaching the turtle condition and (2) evidence for a predominantly amphibious or fossorial mode of life in Pappochelys, which support the hypothesis that crucial steps in the evolution of the shell occurred in a terrestrial rather than fully aquatic environment.