bluuebunny/crossref_metadata_2025_split huggingface dataset:
A combination of yeast beta-glucan and milk hydrolysate is a suitable alternative to zinc oxide in the race to alleviate post-weaning diarrhoea in piglets
Authors: Mukhopadhya Anindya , O’Doherty John V. , Sweeney Torres 
Published: January 2019

AbstractZinc oxide (ZnO) is currently used as a dietary supplement to support gut homeostasis during the standard ‘abrupt’ weaning practices in commercial pig production. However, a replacement is urgently required as a ban on ZnO usage is imminent. The objective of this study was to explore the potential of a bovine casein hydrolysate (5kDaR) and yeast β-glucan, and their combination, as an alternative to ZnO. Eighty 21d old male piglets received a basal diet or supplemented with 5kDaR and yeast β-glucan alone or in combination, or ZnO from the day of weaning and were monitored for 10 days (n = 8/group; dietary groups: control diet; control diet + 5kDaR; control diet + yeast β-glucan; control diet + 5kDaR + yeast β-glucan; control diet + ZnO). Individually, supplement yeast β-glucan or 5kDaR did not improve gut health. In contrast, the yeast β-glucan + 5kDaR combination supplement supported a healthy gut, indicated by healthy faecal scores and improved growth parameters; similar to ZnO inclusion (P > 0.05). There was no negative effect on the gut microbiota with yeast β-glucan + 5kDaR supplementation; while ZnO negatively affected theBifidobacterium spp. abundance (P < 0.05). The inflammatory NFκB pathway was suppressed by yeast β-glucan + 5kDaR supplementation, similar to ZnO (P > 0.05). In conclusion, the dietary supplement yeast β-glucan + 5kDaR restored homeostasis of the newly weaned piglet gut similar to the widely used ZnO, and can potentially replace ZnO.
Nonlinear Imaging using Object-Dependent Illumination
Authors: Lu Jen-Tang , Goy Alexandre S. , Fleischer Jason W. 
Published: January 2019

AbstractNonlinear imaging systems can surpass the limits of linear optics, but nearly all rely on physical media and atomic/molecular response to work. These materials are constrained by their physical properties, such as frequency selectivity, environmental sensitivity, time behavior, and fixed nonlinear response. Here, we show that electro-optic spatial light modulators (SLMs) can take the place of traditional nonlinear media, provided that there is a feedback between the shape of the object and the pattern on the modulator. This feedback creates a designer illumination that generalizes the field of adaptive optics to include object-dependent patterns. Unlike physical media, the SLM response can provide a wide range of mathematical functions, operate over broad bandwidths at high speeds, and work equally well at high power and single-photon levels. We demonstrate the method experimentally for both coherent and incoherent light.
Superficial sedimentary stocks and sources of carbon and nitrogen in coastal vegetated assemblages along a flow gradient
Authors: Santos Rui , Duque-Núñez Natalia , de los Santos Carmen B. , Martins Márcio , Carrasco A. Rita , Veiga-Pires Cristina 
Published: January 2019

AbstractCoastal vegetated ecosystems are major organic carbon (OC) and total nitrogen (TN) sinks, but the mechanisms that regulate their spatial variability need to be better understood. Here we assessed how superficial sedimentary OC and TN within intertidal vegetated assemblages (saltmarsh and seagrass) vary along a flow gradient, which is a major driver of sediment grain size, and thus of organic matter (OM) content. A significant relationship between flow current velocity and OC and TN stocks in the seagrass was found, but not in the saltmarsh. OC and TN stocks of the saltmarsh were larger than the seagrass, even though that habitat experiences shorter hydroperiods. Mixing models revealed that OM sources also varied along the flow gradient within the seagrass, but not in the saltmarsh, showing increasing contributions of microphytobenthos (17–32%) and decreasing contributions of POM (45–35%). As well, OM sources varied vertically as microphytobenthos contribution was highest at the higher intertidal saltmarsh (48%), but not POM (39%). Macroalgae, seagrass and saltmarsh showed low contributions. Local trade-offs between flow current velocities, hydroperiod and structural complexity of vegetation must be considered, at both horizontal and vertical (elevation) spatial dimensions, for better estimates of blue carbon and nitrogen in coastal ecosystems.
Liposome-based transfection enhances RNAi and CRISPR-mediated mutagenesis in non-model nematode systems
Authors: Adams Sally , Pathak Prachi , Shao Hongguang , Lok James B. , Pires-daSilva Andre 
Published: January 2019

AbstractNematodes belong to one of the most diverse animal phyla. However, functional genomic studies in nematodes, other than in a few species, have often been limited in their reliability and success. Here we report that by combining liposome-based technology with microinjection, we were able to establish a wide range of genomic techniques in the newly described nematode genus Auanema. The method also allowed heritable changes in dauer larvae of Auanema, despite the immaturity of the gonad at the time of the microinjection. As proof of concept for potential functional studies in other nematode species, we also induced RNAi in the free-living nematode Pristionchus pacificus and targeted the human parasite Strongyloides stercoralis.
Controlling the Polarity of the Molecular Beam Epitaxy Grown In-Bi Atomic Film on the Si(111) Surface
Authors: Lin Cho-Ying , Hsu Chia-Hsiu , Huang Yu-Zhang , Hsieh Shih-Ching , Chen Han-De , Huang Li , Huang Zhi-Quan , Chuang Feng-Chuan , Lin Deng-Sung 
Published: January 2019

AbstractSynchrotron radiation core-level photoemission spectroscopy, scanning tunneling microscopy (STM), and first-principles calculations have been utilized to explore the growth processes and the atomic structure of the resulting films during the two-step molecular beam epitaxy (MBE) of In and Bi on the Si(111) surface. Deposition of 1.0-ML Bi on the In/Si(111)-(4 × 1) surface at room temperature results in Bi-terminated BiIn-(4 × 3) structures, which are stable up to ~300 °C annealing. By contrast, deposition of In on the β-Bi/Si(111)-(√3 × √3) surface at room temperature results in three dimensional (3D) In islands. In both cases, annealing at 460 °C results in the same In-terminated In0.75Bi/Si(111)-(2 × 2) surface. Our DFT calculations confirm that the surface energy of In-terminated In0.75Bi/Si(111)-(2 × 2) system is lower than that of Bi-terminated Bi0.75In/Si(111)-(2 × 2). These findings provide means for the control of the polarity of the MBE In-Bi atomically thick films.
TMEM16F activation by Ca2+ triggers plasma membrane expansion and directs PD-1 trafficking
Authors: Bricogne Christopher , Fine Michael , Pereira Pedro M. , Sung Julia , Tijani Maha , Wang Youxue , Henriques Ricardo , Collins Mary K. , Hilgemann Donald W. 
Published: January 2019

AbstractTMEM16F is a Ca2+-gated ion channel that is required for Ca2+-activated phosphatidylserine exposure on the surface of many eukaryotic cells. TMEM16F is widely expressed and has roles in platelet activation during blood clotting, bone formation and T cell activation. By combining microscopy and patch clamp recording we demonstrate that activation of TMEM16F by Ca2+ionophores in Jurkat T cells triggers large-scale surface membrane expansion in parallel with phospholipid scrambling. With continued ionophore application,TMEM16F-expressing cells then undergo extensive shedding of ectosomes. The T cell co-receptor PD-1 is selectively incorporated into ectosomes. This selectivity depends on its transmembrane sequence. Surprisingly, cells lacking TMEM16F not only fail to expand surface membrane in response to elevated cytoplasmic Ca2+, but instead undergo rapid massive endocytosis with PD-1 internalisation. These results establish a new role for TMEM16F as a regulator of Ca2+activated membrane trafficking.
Metabolic Syndrome and Incidence of Laryngeal Cancer: A Nationwide Cohort Study
Authors: Kim Sang-Yeon , Han Kyung-do , Joo Young-Hoon 
Published: January 2019

AbstractIt is unknown whether the presence of metabolic syndrome (MetS) affects the incidence of laryngeal cancer. The aim of this national population-based retrospective study was to analyze the relationship between MetS and the incidence of laryngeal cancer. Patients with laryngeal cancer (ICD-10: C32) between 2009 and 2010 were retrospectively identified and tracked until 2015 using the Korean Health Insurance claims database. During the seven-year follow-up period, 5,322 subjects were newly diagnosed with larynx cancer. The mean age of people with laryngeal cancer was much higher than those without (63.29 vs. 47.7 years, p < 0.0001), and the incidence of larynx cancer in men was much higher than that in women (93.16% vs. 6.84%, p < 0.0001). Age, gender, smoking status, alcohol intake, and exercise-adjusted hazard ratios indicated that participants with MetS had a 1.13-fold higher hazard of having larynx cancer than those without MetS. The number of MetS components was a strong risk factor for laryngeal cancer with a higher risk estimate of this cancer in both ex- and current smokers as well as people who have never smoked. MetS was found to be an independent risk factor for the incidence of laryngeal cancer. In Korea, MetS and its components are significantly associated with the development of laryngeal cancer.
Local anaesthetics upregulate nitric oxide generation in cord blood and adult human neutrophils
Authors: Kulinska Karolina I. , Billert Maria , Sawinski Krzysztof , Czerniak Katarzyna , Gaca Michał , Kusza Krzysztof , Nowak Krzysztof W. , Siemionow Maria , Billert Hanna 
Published: January 2019

AbstractNitric oxide (NO) generation by systemic neonatal neutrophils is not clarified. It is also not known whether local anaesthetics (LAs) transferred to the fetal systemic circulation following maternal epidural blockade may affect this process. In the present study, NO generation was evaluated in neutrophils from cord blood (CB, n = 11) and adult blood (n = 10) following exposure to bupivacaine (0.0005, 0.005, 1 mM), lidocaine (0.002, 0.02, 4 mM) and ropivacaine (0.0007, 0.007, 1.4 mM) using flow cytometry, as well as indirectly by determining nitrite concentrations in cell incubation media. To determine the role of NO synthase (NOS) isoforms in NO generation following exposure to LAs, experiments were repeated in the presence of the NOS inhibitors, NG-nitro-L-arginine methyl ester and aminoguanidine; in addition, the expression of NOS isoforms was analysed. CB neutrophils produced less NO than adult neutrophils. LAs, especially ropivacaine and lidocaine, stimulated neutrophil NO generation, but in CB neutrophils this effect was negligible at clinically relevant drug concentrations. A mechanism involving NOS activity was responsible for the observed phenomena. In conclusion, LAs are able to upregulate neutrophil NO production, but in neonates this effect is likely to be clinically insignificant.
Ag fiber/IZO Composite Electrodes: Improved Chemical and Thermal Stability and Uniform Light Emission in Flexible Organic Light-Emitting Diodes
Authors: Choi Junhee , Park Cheol Hwee , Kwack Jin Ho , Lee Dong Jun , Kim Jae Geun , Choi Jaemyeong , Bae Bong Han , Park Soo Jong , Kim Enjung , Park Young Wook , Ju Byeong-Kwon 
Published: January 2019

AbstractElectrospun metal fiber is a promising flexible transparent electrode owing to its extremely long length and facile fabrication process. However, metal-fiber electrodes have problems with chemical and thermal stability and nonuniform emission in organic light-emitting diode (OLED) at low luminance. In this study, we proposed a Ag fiber/IZO composite electrode with high stability. Ag fiber/IZO composite electrodes exhibited chemical and thermal stability. In addition, it was demonstrated that the OLED with the Ag fiber/IZO composite electrode operated stably, and the uniform emission of the OLED with metal-fiber electrodes improved by using highly conductive IZO film.
Characterization of drug binding within the HCN1 channel pore
Authors: Tanguay Jérémie , Callahan Karen M. , D’Avanzo Nazzareno 
Published: January 2019

AbstractHyperpolarization-activated cyclic nucleotide-gated (HCN) channels mediate rhythmic electrical activity of cardiac pacemaker cells, and in neurons play important roles in setting resting membrane potentials, dendritic integration, neuronal pacemaking, and establishing action potential threshold. Block of HCN channels slows the heart rate and is currently used to treat angina. However, HCN block also provides a promising approach to the treatment of neuronal disorders including epilepsy and neuropathic pain. While several molecules that block HCN channels have been identified, including clonidine and its derivative alinidine, lidocaine, mepivacaine, bupivacaine, ZD7288, ivabradine, zatebradine, and cilobradine, their low affinity and lack of specificity prevents wide-spread use. Different studies suggest that the binding sites of these inhibitors are located in the inner vestibule of HCN channels, but the molecular details of their binding remain unknown. We used computational docking experiments to assess the binding sites and mode of binding of these inhibitors against the recently solved atomic structure of human HCN1 channels, and a homology model of the open pore derived from a closely related CNG channel. We identify a possible hydrophobic groove in the pore cavity that plays an important role in conformationally restricting the location and orientation of drugs bound to the inner vestibule. Our results also help explain the molecular basis of the low-affinity binding of these inhibitors, paving the way for the development of higher affinity molecules.
Can electric fields explain inter-individual variability in transcranial direct current stimulation of the motor cortex?
Authors: Laakso Ilkka , Mikkonen Marko , Koyama Soichiro , Hirata Akimasa , Tanaka Satoshi 
Published: January 2019

AbstractThe effects of transcranial direct current stimulation (tDCS) on motor cortical excitability are highly variable between individuals. Inter-individual differences in the electric fields generated in the brain by tDCS might play a role in the variability. Here, we explored whether these fields are related to excitability changes following anodal tDCS of the primary motor cortex (M1). Motor evoked potentials (MEPs) were measured in 28 healthy subjects before and after 20 min sham or 1 mA anodal tDCS of right M1 in a double-blind crossover design. The electric fields were individually modelled based on magnetic resonance images. Statistical analysis indicated that the variability in the MEPs could be partly explained by the electric fields, subjects with the weakest and strongest fields tending to produce opposite changes in excitability. To explain the findings, we hypothesized that the likely locus of action was in the hand area of M1, and the effective electric field component was that in the direction normal to the cortical surface. Our results demonstrate that a large part of inter-individual variability in tDCS may be due to differences in the electric fields. If this is the case, electric field dosimetry could be useful for controlling the neuroplastic effects of tDCS.
A pathogenic haplotype, common in Europeans, causes autosomal recessive albinism and uncovers missing heritability in OCA1
Authors: Grønskov Karen , Jespersgaard Cathrine , Bruun Gitte Hoffmann , Harris Pernille , Brøndum-Nielsen Karen , Andresen Brage S. , Rosenberg Thomas 
Published: January 2019

AbstractOculocutaneous albinism (OCA) is a genetically heterogeneous disorder. Six genes are associated with autosomal recessive OCA (TYR, OCA2, TYRP1, SLC45A2, SLC24A5 and LRMDA), and one gene, GPR143, is associated with X-linked ocular albinism (OA). Molecular genetic analysis provides a genetic diagnosis in approximately 60% of individuals with clinical OA/OCA. A considerably number of the remaining 40% are heterozygous for a causative sequence variation in TYR. To identify missing causative sequence variants in these, we used a NGS based approach, genotyping and segregation analysis. We report two putative pathogenic haplotypes which only differ by two extremely rare SNVs, indicating that the haplotypes have a common derivation. Both haplotypes segregate consistent with an autosomal recessive inheritance pattern and include the allele p.S192Y-p.R402Q. An explanation for the pathogenicity of the haplotypes could be the combination of p.S192Y and p.R402Q. Homozygosity for the pathogenic haplotypes causes a partial albinism phenotype. In our cohort, 15% of affected individuals had a molecular genetic diagnosis involving the pathogenic haplotype. Consequently, the prevalence of albinism seems to be substantially underestimated, and children with unexplained bilateral subnormal vision and/or nystagmus should be analysed clinically and molecularly for albinism.
A Combined Targeted and Whole Exome Sequencing Approach Identified Novel Candidate Genes Involved in Heritable Pulmonary Arterial Hypertension
Authors: Barozzi Chiara , Galletti Margherita , Tomasi Luciana , De Fanti Sara , Palazzini Massimiliano , Manes Alessandra , Sazzini Marco , Galiè Nazzareno 
Published: January 2019

AbstractThe pathogenesis of idiopathic and heritable forms of pulmonary arterial hypertension is still not completely understood, even though several causative genes have been proposed, so that a third of patients remains genetically unresolved. Here we applied a multistep approach to extend identification of the genetic bases of such a disease by searching for novel candidate genes/pathways. Twenty-eight patients belonging to 18 families were screened for BMPR2 mutations and BMPR2-negative samples were tested for 12 additional candidate genes by means of a specific massive parallel sequencing-based assay. Finally, whole exome sequencing was performed on four patients showing no mutations at known disease genes, as well as on their unaffected parents. In addition to EIF2AK4, which has been already suggested to be associated with pulmonary veno-occlusive disease, we identified the novel candidate genes ATP13A3, CD248, EFCAB4B, involved in lung vascular remodeling that represent reliable drivers contributing to the disease according to their biological functions/inheritance patterns. Therefore, our results suggest that combining gene panel and whole exome sequencing provides new insights useful for the genetic diagnosis of familial and idiopathic pulmonary arterial hypertension, as well as for the identification of biological pathways that will be potentially targeted by new therapeutic strategies.
STAT3 is activated in multicellular spheroids of colon carcinoma cells and mediates expression of IRF9 and interferon stimulated genes
Authors: Edsbäcker Elin , Serviss Jason T. , Kolosenko Iryna , Palm-Apergi Caroline , De Milito Angelo , Tamm Katja Pokrovskaja 
Published: January 2019

AbstractThree-dimensional cell cultures, such as multicellular spheroids (MCS), reflect the in vivo architecture of solid tumours and multicellular drug resistance. We previously identified interferon regulatory factor 9 (IRF9) to be responsible for the up-regulation of a subset of interferon (IFN)-stimulated genes (ISGs) in MCS of colon carcinoma cells. This set of ISGs closely resembled a previously identified IFN-related DNA-damage resistance signature (IRDS) that was correlated to resistance to chemo- and radiotherapy. In this study we found that transcription factor STAT3 is activated upstream of IRF9 and binds to the IRF9 promoter in MCS of HCT116 colorectal carcinoma cells. Transferring conditioned media (CM) from high cell density conditions to non-confluent cells resulted in STAT3 activation and increased expression of IRF9 and a panel of IRDS genes, also observed in MCS, suggesting the involvement of a soluble factor. Furthermore, we identified gp130/JAK signalling to be responsible for STAT3 activation, IRF9, and IRDS gene expression in MCS and by CM. Our data suggests a novel mechanism where STAT3 is activated in high cell density conditions resulting in increased expression of IRF9 and, in turn, IRDS genes, underlining a mechanism by which drug resistance is regulated.
Spectral photoacoustic imaging to estimate in vivo placental oxygenation during preeclampsia
Authors: Lawrence Dylan J. , Escott Megan E. , Myers Leann , Intapad Suttira , Lindsey Sarah H. , Bayer Carolyn L. 
Published: January 2019

AbstractPreeclampsia is a pregnancy-related hypertensive disorder accounting for 14% of global maternal deaths annually. Preeclampsia — maternal hypertension and proteinuria — is promoted by placental ischemia resulting from reduced uteroplacental perfusion. Here, we assess longitudinal changes in placental oxygenation during preeclampsia using spectral photoacoustic imaging. Spectral photoacoustic images were acquired of the placenta of normal pregnant (NP) and preeclamptic reduced uterine perfusion pressure (RUPP) Sprague Dawley rats on gestational days (GD) 14, 16, and 18, corresponding to mid- to late gestation (n = 10 per cohort). Two days after implementation of the RUPP surgical model, placental oxygen saturation decreased 12% in comparison with NP. Proteinuria was determined from a 24-hour urine collection prior to imaging on GD18. Blood pressure measurements were obtained on GD18 after imaging. Placental hypoxia in the RUPP was confirmed with histological staining for hypoxia-inducible factor (HIF)-1α, a cellular transcription regulator which responds to local oxygen levels. Using in vivo, longitudinal imaging methods we determined that the placenta in the reduced uterine perfusion pressure rat model of preeclampsia is hypoxic, and that this hypoxia is maintained through late gestation. Future work will utilize these methods to assess the impact of novel therapeutics on placental ischemia and the progression of preeclampsia.
RGB Magnetophotonic Crystals for High-contrast Magnetooptical Spatial Light Modulators
Authors: Kharratian Soheila , Urey Hakan , Onbaşlı Mehmet C. 
Published: January 2019

AbstractMagnetooptical spatial light modulators (MOSLMs) are photonic devices that encode information in photonic waveforms by changing their amplitude and phase using magnetooptical Faraday or Kerr rotation. Despite the progress on both MO materials and switching methods, significant improvements on materials engineering and SLM design are needed for demonstrating low-power, multicolor, analog and high-contrast MOSLM devices. In this study, we present design rules and example designs for a high-contrast and large figure-of-merit MOSLM using three-color magnetophotonic crystals (MPC). We demonstrate for the first time, a three-defect MPC capable of simultaneously enhancing Faraday rotation, and high-contrast modulation at three fundamental wavelengths of red, green and blue (RGB) within the same pixel. We show using 2D finite-difference time-domain simulations that bismuth-substituted yttrium iron garnet films are promising for low-loss and high Faraday rotation MOSLM device in the visible band. Faraday rotation and loss spectra as well as figure-of-merit values are calculated for different magnetophotonic crystals of the form (H/L)p/(D/L)q/(H/L)p. After an optimization of layer thicknesses and MPC configuration, Faraday rotation values were found to be between 20–55° for losses below 20 dB in an overall thickness less than 1.5 µm including three submicron garnet defect layers. The experimental demonstration of our proposed 3-color MOSLM devices can enable bistable photonic projectors, holographic displays, indoor visible light communication devices, photonic beamforming for 5 G telecommunications and beyond.