bluuebunny/crossref_metadata_2025_split huggingface dataset:
An Assessment of Dissolved Organic Carbon Biodegradability and Priming in Blackwater Systems
Authors: Textor Sadie R. , Guillemette François , Zito Phoebe A. , Spencer Robert G. M. 
Published: August 2018

AbstractRivers deliver approximately 260 Tg of dissolved organic carbon (DOC) to the ocean annually, yet there is little evidence of terrigenous DOC (tDOC) in the ocean. While tDOC was historically believed to be stable and resistant to microbial degradation, it has recently been shown that freshwater systems mineralize more tDOC than originally thought. The priming effect is a possible mechanism by which inputs of biolabile DOC enhance the bioavailability of stable DOC components in aquatic systems, resulting in higher rates of microbial remineralization. Here we investigate tDOC biodegradability by conducting bioincubation experiments and utilizing ultrahigh resolution mass spectrometry to characterize the chemical composition of blackwater and leachate dissolved organic matter (DOM) samples. The role of priming in blackwater ecosystems was assessed through the inclusion of bioincubation treatments amended with a variety of simple biolabile OC substrates. Blackwaters lost 6.10 ± 3.85% DOC within 1 month, while leachates lost 38.10 ± 16.74% DOC. There were no significant differences between DOC remineralization in control and primed treatments, indicating that priming is not an important factor in the biodegradation of DOC in blackwater ecosystems. However, the proportion of biodegradable DOC and DOM composition were significantly correlated, mostly driven by the contribution of aliphatic compounds (H/C ≥ 1.5, O/C < 0.9) that were abundant (9.3 ± 5.2%) in leachate DOM. The molecular signature of biodegraded leachate DOM resembled that of stable blackwater DOM, indicating that bioavailable DOM components leached from plant litter are rapidly utilized and stable DOM is exported downstream.
Last Millennium Adélie Penguin Mortality and Colony Abandonment Events on Long Peninsula, East Antarctica
Authors: Gao Yuesong , Yang Lianjiao , Xie Zhouqing , Emmerson Louise , Southwell Colin , Wang Yuhong , Sun Liguang 
Published: August 2018

AbstractThe Adélie penguin (Pygoscelis adeliae) is sensitive to climatic and environmental changes, and paleoecological studies of Adélie penguins and their response to climatic forcing in maritime Antarctica usually address changes on long time scales. However, on Long Peninsula, East Antarctica, we identified numerous mummified Adélie penguin carcasses and phases of rapid sediment deposition at ~750 and ~200 years BP, indicating two multidecadal mass mortality events. Based upon chronological and sedimentary evidence, we propose that the two events were caused by heavy regional precipitation, which led to the abandonment of numerous penguin subcolonies. The anomalous precipitation was likely associated with the intensification of regional meridional air transport under a zonal wave number 3 pattern. Since such atmospheric conditions correspond to present‐day observations, and are expected to persist if climate change continues, the mortality events revealed in this study could become an increasing threat to penguins.
Microfabricated intracortical extracellular matrix-microelectrodes for improving neural interfaces
Authors: Shen Wen , Das Suradip , Vitale Flavia , Richardson Andrew , Ananthakrishnan Akshay , Struzyna Laura A. , Brown Daniel P. , Song Naixin , Ramkumar Murari , Lucas Timothy , Cullen D. Kacy , Litt Brian , Allen Mark G. 
Published: August 2018

AbstractIntracortical neural microelectrodes, which can directly interface with local neural microcircuits with high spatial and temporal resolution, are critical for neuroscience research, emerging clinical applications, and brain computer interfaces (BCI). However, clinical applications of these devices remain limited mostly by their inability to mitigate inflammatory reactions and support dense neuronal survival at their interfaces. Herein we report the development of microelectrodes primarily composed of extracellular matrix (ECM) proteins, which act as a bio-compatible and an electrochemical interface between the microelectrodes and physiological solution. These ECM-microelectrodes are batch fabricated using a novel combination of micro-transfer-molding and excimer laser micromachining to exhibit final dimensions comparable to those of commercial silicon-based microelectrodes. These are further integrated with a removable insertion stent which aids in intracortical implantation. Results from electrochemical models and in vivo recordings from the rat’s cortex indicate that ECM encapsulations have no significant effect on the electrochemical impedance characteristics of ECM-microelectrodes at neurologically relevant frequencies. ECM-microelectrodes are found to support a dense layer of neuronal somata and neurites on the electrode surface with high neuronal viability and exhibited markedly diminished neuroinflammation and glial scarring in early chronic experiments in rats.
Characterization of Upper Gastrointestinal Symptoms, Gastric Motor Functions, and Associations in Patients with Diabetes at a Referral Center
Authors: Chedid Victor , Brandler Justin , Vijayvargiya Priya , Park Seon-Young , Szarka Lawrence A. , Camilleri Michael 
Published: August 2018

OBJECTIVES:
Our aim was to characterize upper gastrointestinal (UGI) symptoms and associations in individuals with diabetes mellitus (DM) who had undergone evaluation of gastric emptying (GE) and accommodation (GA) at a referral center.

METHODS:
From the Mayo Clinic Rochester electronic medical records of adults with diabetes types 1 and 2 (DM1 and DM2) evaluated between January 1997 and December 2015, we extracted demographics, UGI symptoms, current medications, treatments for diabetes, GE solids by scintigraphy, GA by single photon emission computed tomography (SPECT), and diabetes complications. We compared subgroups with delayed (GE at 2 h <25% or GE at 4 h <75%), rapid (GE at 1 h > 35%), and normal GE, as well as reduced (<428 mL) and normal GA.

RESULTS:
We reviewed 108 patients (60.2% females, median age 49.0 years). Overall, 71.3% had DM2; one-third of these were insulin dependent and had fairly well-controlled diabetes (median HbA1c 6.7% (IQR 6.2; 7.9)). Manifestations of diabetic triopathy (peripheral neuropathy, nephropathy, and retinopathy) were uncommon at presentation with UGI symptoms. Nausea was the most common symptom (80.6%). There were single or combined GE (total 56%: rapid in 37%, slow in 19%) and GA (total 39%) abnormalities; there was normal GA and GE in 28%; 40.3% of the DM2 patients had accelerated GE at 1 h. GE at 1 h is associated with nausea/vomiting, and fasting gastric volume is associated with bloating.

CONCLUSIONS:
Among referred diabetic patients with UGI symptoms, GE and GA testing identifies potential targets for individualizing treatment and avoidance of empirical trials for the 28% with no disturbance of GE and GA.
Epigenetic variance in dopamine D2 receptor: a marker of IQ malleability?
Authors: Kaminski Jakob A. , Schlagenhauf Florian , Rapp Michael , Awasthi Swapnil , Ruggeri Barbara , Deserno Lorenz , Banaschewski Tobias , Bokde Arun L. W. , Bromberg Uli , Büchel Christian , Quinlan Erin Burke , Desrivières Sylvane , Flor Herta , Frouin Vincent , Garavan Hugh , Gowland Penny , Ittermann Bernd , Martinot Jean-Luc , Martinot Marie-Laure Paillère , Nees Frauke , Orfanos Dimitri Papadopoulos , Paus Tomáš , Poustka Luise , Smolka Michael N. , Fröhner Juliane H. , Walter Henrik , Whelan Robert , Ripke Stephan , Schumann Gunter , Heinz Andreas ,   the IMAGEN consortium
Published: August 2018

AbstractGenetic and environmental factors both contribute to cognitive test performance. A substantial increase in average intelligence test results in the second half of the previous century within one generation is unlikely to be explained by genetic changes. One possible explanation for the strong malleability of cognitive performance measure is that environmental factors modify gene expression via epigenetic mechanisms. Epigenetic factors may help to understand the recent observations of an association between dopamine-dependent encoding of reward prediction errors and cognitive capacity, which was modulated by adverse life events. The possible manifestation of malleable biomarkers contributing to variance in cognitive test performance, and thus possibly contributing to the “missing heritability” between estimates from twin studies and variance explained by genetic markers, is still unclear. Here we show in 1475 healthy adolescents from the IMaging and GENetics (IMAGEN) sample that general IQ (gIQ) is associated with (1) polygenic scores for intelligence, (2) epigenetic modification of DRD2 gene, (3) gray matter density in striatum, and (4) functional striatal activation elicited by temporarily surprising reward-predicting cues. Comparing the relative importance for the prediction of gIQ in an overlapping subsample, our results demonstrate neurobiological correlates of the malleability of gIQ and point to equal importance of genetic variance, epigenetic modification of DRD2 receptor gene, as well as functional striatal activation, known to influence dopamine neurotransmission. Peripheral epigenetic markers are in need of confirmation in the central nervous system and should be tested in longitudinal settings specifically assessing individual and environmental factors that modify epigenetic structure.
CD59 is a potential biomarker of esophageal squamous cell carcinoma radioresistance by affecting DNA repair
Authors: Zhou Yuzhen , Chu Li , Wang Qi , Dai Weixing , Zhang Xiaozhou , Chen Jianfeng , Li Ling , Ding Peipei , Zhang Long , Gu Hongyu , Li Luying , Lv Xinyue , Zhang Wei , Zhou Danlei , Zhang Pingzhao , Cai Guoxiang , Zhao Kuaile , Hu Weiguo 
Published: August 2018

AbstractRadiation therapy is an important treatment modality for esophageal cancer. However, acquisition of radioresistance ultimately results in esophageal cancer relapse. CD59, a membrane-bound complement regulatory protein, can transduce signals via a Src kinase in the lipid raft, thus playing a complement-independent role. However, the effect of CD59 on the esophageal cancer response to ionizing radiation remains unclear. In this study, we found that the expression level of CD59 was positively correlated with the radioresistance of esophageal cancer cell lines and clinical specimens. High CD59 expression indicated poor overall survival (OS) and disease-free survival (DFS) in esophageal squamous cell carcinoma (ESCC) patients who received radiotherapy. Genetic alteration of CD59 expression modulated the radiosensitivity of esophageal cancer cells to ionizing radiation. CD59 deficiency exacerbated DNA damage, hindered cell proliferation, and induced G2/M cell cycle arrest and cellular senescence, leading to an impaired DNA damage repair ability. In addition, CD59 deficiency almost completely reduced the phosphorylation of Src at Y416 despite ionizing radiation. A Src inhibitor saracatinib sensitized esophageal cancer cells to irradiation. Therefore, CD59 may be a potential biomarker for predicting the radioresistance of ESCC to radiotherapy.
High NRF2 level mediates cancer stem cell-like properties of aldehyde dehydrogenase (ALDH)-high ovarian cancer cells: inhibitory role of all-trans retinoic acid in ALDH/NRF2 signaling
Authors: Kim Donghyeok , Choi Bo-hyun , Ryoo In-geun , Kwak Mi-Kyoung 
Published: August 2018

AbstractAldehyde dehydrogenase 1A1 (ALDH1A1) is one of cancer stem cell (CSC) markers, and high ALDH1 expression has been related to drug resistance and facilitated tumor growth. In this study, we investigated the potential involvement of nuclear factor erythroid 2-like 2 (NFE2L2/NRF2) in CSC-like properties of ALDH-high ovarian CSCs. Our experimental system, ALDH1A1-high (ALDH-H) subpopulation, was isolated and stabilized using doxorubicin-resistant ovarian cancer A2780 cells. ALDH-H exerted CSC-like properties such as drug resistance, colony/sphere formation, and enhanced tumor growth along with high levels of CSCs markers compared to ALDH1A1-low (ALDH-L). Levels of NRF2 and subsequent target genes substantially increased in ALDH-H cells, and the increase in ALDH1A1 and p62 was associated with NRF2 upregulation. ALDH1A1-silencing blocked increases in NRF2, drug efflux transporters, and p62, along with CSC markers in ALDH-H cells. The inhibition of p62, which was elevated in ALDH-H, suppressed NRF2 activation. High NRF2 level was confirmed in the ALDH1-high subpopulation from colon cancer HCT116 cells. The functional implication of NRF2 activation in ovarian CSCs was verified by two experimental approaches. First, CSC-like properties such as high CSC markers, chemoresistance, colony/sphere formation, and tumor growth were significantly inhibited by NRF2-silencing in ALDH-H cells. Second, all-trans retinoic acid (ATRA) suppressed ALDH1 expression, inhibiting NRF2 activation, which led to the attenuation of CSC-like properties in ALDH-H cells but not in ALDH-L cells. These results provide insight into the molecular basis of the ALDH1A1-mediated development of CSC-like properties such as stress/treatment resistance, and further suggest the therapeutic potential of ATRA in ALDH-high ovarian CSCs.
Antibody biomarker for de novo Parkinson disease: attempted validation
Authors: Feng Na , Simanski Scott , Islam Kazi , Hynan Linda S. , Kodadek Thomas , German Dwight C. 
Published: August 2018

AbstractParkinson disease (PD) is a progressive neurodegenerative disease with motor symptoms that result from degeneration of midbrain dopaminergic neurons. Biomarker research seeks to identify the disease during the pre-symptomatic phase, which is a time when therapeutic intervention will be most helpful. Previously, we screened a combinatorial peptoid library to search for antibodies that are present at much higher levels in the serum of PD patients than in control subjects. One such compound, called the PD2 peptoid, was 84% accurate for the identification of de novo PD when employed as the capture agent in an enzyme-linked immunosorbent assay. This peptoid recognized an IgG3 antibody, and IgG3 levels were also found to be significantly higher in PD vs. control serum. In that study we used samples from the NINDS Parkinson’s Disease Biomarker Program. The current study sought to validate that finding using serum samples from de novo and control subjects in the Parkinson’s Progression Markers Initiative study. We found no difference in levels of antibodies captured by the PD2 peptoid in the de novo PD vs. control subjects, and no difference in IgG3 serum levels in the two groups. The failure to replicate our previous study appears to be due to the lack of difference in serum IgG3 levels between the PD and control subjects in the current study.
VaxArray potency assay for rapid assessment of “pandemic” influenza vaccines
Authors: Byrne-Nash Rose T. , Miller David F. , Bueter Katie M. , Gillis Jacob H. , Kuck Laura R. , Rowlen Kathy L. 
Published: August 2018

AbstractThe VaxArray Influenza Pandemic HA (VXI-pHA) potency assay is a multiplexed sandwich immunoassay that consists of nine broadly reactive yet subtype-specific monoclonal capture antibodies printed in microarray format and a suite of fluor-labeled secondary antibodies that were selected to probe conserved HA epitopes. VXI-pHA was designed to optimize the probability that the ready-to-use assay would work for the most concerning, emergent influenza A strains, eliminating the need for the time-consuming process of reference reagents production. The performance of this new potency test was evaluated using a panel of 48 potentially pandemic strains of influenza viruses and vaccines spanning 16 years of antigenic drift, including the most recent pre-pandemic vaccine being developed against the “5th wave” A/H7N9 virus. The VXI-pHA assay demonstrated coverage of 93%, 92%, and 100% for H5, H7, and H9 antigens, respectively. The assay demonstrated high sensitivity with linear dynamic ranges of more than 150-fold and quantification limits ranging from 1 to 5 ng/mL. For three production lots of H7N9 monobulk drug substance, the assay exhibited excellent accuracy (100 ± 6%) and analytical precision (CV 6 ± 2%). The high assay sensitivity enabled robust detection and quantification of hemagglutinin in crude in-process samples and low-dose, adjuvanted vaccines with an accuracy of 100 ± 10%.
Morphodynamic evolution following sediment release from the world’s largest dam removal
Authors: Ritchie Andrew C. , Warrick Jonathan A. , East Amy E. , Magirl Christopher S. , Stevens Andrew W. , Bountry Jennifer A. , Randle Timothy J. , Curran Christopher A. , Hilldale Robert C. , Duda Jeffrey J. , Gelfenbaum Guy R. , Miller Ian M. , Pess George R. , Foley Melissa M. , McCoy Randall , Ogston Andrea S. 
Published: August 2018

AbstractSediment pulses can cause widespread, complex changes to rivers and coastal regions. Quantifying landscape response to sediment-supply changes is a long-standing problem in geomorphology, but the unanticipated nature of most sediment pulses rarely allows for detailed measurement of associated landscape processes and evolution. The intentional removal of two large dams on the Elwha River (Washington, USA) exposed ~30 Mt of impounded sediment to fluvial erosion, presenting a unique opportunity to quantify source-to-sink river and coastal responses to a massive sediment-source perturbation. Here we evaluate geomorphic evolution during and after the sediment pulse, presenting a 5-year sediment budget and morphodynamic analysis of the Elwha River and its delta. Approximately 65% of the sediment was eroded, of which only ~10% was deposited in the fluvial system. This restored fluvial supply of sand, gravel, and wood substantially changed the channel morphology. The remaining ~90% of the released sediment was transported to the coast, causing ~60 ha of delta growth. Although metrics of geomorphic change did not follow simple time-coherent paths, many signals peaked 1–2 years after the start of dam removal, indicating combined impulse and step-change disturbance responses.
Ultrastructure and Enzymatic Hydrolysis of Deuterated Switchgrass
Authors: Bhagia Samarthya , Meng Xianzhi , Evans Barbara R. , Dunlap John R. , Bali Garima , Chen Jihua , Reeves Kimberly Shawn , Ho Hoi Chun , Davison Brian H. , Pu Yunqiao , Ragauskas Arthur J. 
Published: August 2018

AbstractNeutron scattering of deuterated plants can provide fundamental insight into the structure of lignocellulosics in plant cell walls and its deconstruction by pretreatment and enzymes. Such plants need to be characterized for any alterations to lignocellulosic structure caused by growth in deuterated media. Here we show that glucose yields from enzymatic hydrolysis at lower enzyme loading were 35% and 30% for untreated deuterated and protiated switchgrass, respectively. Lignin content was 4% higher in deuterated switchgrass but there were no significant lignin structural differences. Transmission electron microscopy showed differences in lignin distribution and packing of fibers in the cell walls that apparently increased surface area of cellulose in deuterated switchgrass, increasing cellulose accessibility and lowering its recalcitrance. These differences in lignification were likely caused by abiotic stress due to growth in deuterated media.
Origin of the catalytic activity of phosphorus doped MoS2 for oxygen reduction reaction (ORR) in alkaline solution: a theoretical study
Authors: Liu Cheng , Dong Huilong , Ji Yujin , Hou Tingjun , Li Youyong 
Published: August 2018

AbstractPhosphorus doped MoS2 nanosheets (P-doped MoS2) have been reported as excellent oxygen reduction reaction (ORR) catalysts with four-electron selectivity in alkaline solution. By performing density functional theory (DFT) calculations, we revealed the detailed reaction mechanism and the key reaction sites on surface of P-doped MoS2 for ORR catalysis. The double P-doped MoS2 (2P-MoS2) is calculated to be more stable than the single P-doped MoS2 (P-MoS2), and the configuration with two P atoms in neighboring sites exhibits the highest stability. The surface of P-doped MoS2 is found highly active for dissociation of O2. Comparative calculations reveal that P-MoS2 is unsuitable as ORR catalyst due to the high dissociation barrier of H2O (1.19 and 2.06 eV for the first and second adsorbed H2O), while the 2P-MoS2 shows good ORR catalytic activity with much lower dissociation barrier of H2O (0.62 eV). Furthermore, we elucidated that the ORR catalytic activity in 2P-MoS2 originates from the activated S2 atom, which provides an extra adsorption site for the first H2O and the following OH group benefited from the enhanced hydrogen bond interaction. Our results illustrate the mechanisms of doped MoS2 based catalysts and provide rational way for designing ORR catalysts with high activity.
Analysis of QTLs on heading date based on single segment substitution lines in rice (Oryza Sativa L.)
Authors: Zhu Haitao , Li Yun , Liang Jiayan , Luan Xin , Xu Pan , Wang Shaokui , Zhang Guiquan , Liu Guifu 
Published: August 2018

AbstractSingle segment substitution lines (SSSLs) have been confirmed to be powerful tools to perform quantitative trait locus (QTL) analysis. This study illuminated the process and methods of QTL analysis with SSSLs on heading date (HD) in rice. QTL identification under two cropping seasons revealed 98 of 202 SSSLs associated with HD. A total of 22 QTLs were positioned in relative narrow regions on chromosomes by mrMLM.GUI software. QTL qHd3-1 was precisely positioned at 4.4 cM on chromosome 3 by a secondary F2 population. Through SSSL pyramiding, double segment substitution lines were constructed and used to analyze epistatic interactions of digenic loci. Epistatic effects for three pairs of QTLs were estimated, indicating the interactions of QTL qHd3-1 with other QTLs detected and the role to enhance the expression of early ripening or restraining of late flowering QTLs. Additionally, analysis of QTL in different environments provided information about the stability of HD QTLs. This type of research points out the way to excavate favorable genes for design breeding.
Histamine causes endothelial barrier disruption via Ca2+-mediated RhoA activation and tension at adherens junctions
Authors: Kugelmann Daniela , Rotkopf Lukas Thomas , Radeva Mariya Yosifova , Garcia-Ponce Alexander , Walter Elias , Waschke Jens 
Published: August 2018

AbstractDuring inflammation, the disruption of the endothelial barrier leads to increased microvascular permeability. Whether tension along cell junctions contributes to histamine-induced endothelial barrier disruption remains unknown. Rapid Ca2+ influx induced by both histamine and thrombin was accompanied by endothelial barrier breakdown revealed as drop of transendothelial electric resistance in primary human microvascular endothelial cells. Interestingly, GLISA measurements revealed activation of RhoA but not inactivation of Rac1 at the time-point of barrier breakdown. FRET measurements showed activation of RhoA at intercellular junctions after both thrombin and histamine exposure. Breakdown coincided with increased stress fiber formation but not with translocation of vinculin, which was located along junctions in the resting state similar to postcapillary venules ex vivo. Moreover, increased tension at AJs was indicated by immunostaining with a conformation-sensitive antibody targeting the α18-subunit of α-catenin. Ca2+ chelation by BAPTA-AM and ROCK1 inhibition by Y27632 abolished both increase of tension along AJs as well as barrier dysfunction. Moreover, BAPTA-AM decreased RhoA activation following histamine stimulation, indicating a key role of Ca2+ signaling in barrier breakdown. Taken together, in response to histamine, Ca2+ via RhoA/ROCK activation along endothelial adherens junctions (AJs) appears to be critical for barrier disruption and presumably correlated with enhanced tension. However, vinculin appears not to be critical in this process.