bluuebunny/crossref_metadata_2025_split huggingface dataset:
A Guanidine-Based Superbase as Efficient Chemiluminescence Booster
Authors: Geiselhart Christina M. , Schmitt Christian W. , Jöckle Philipp , Mutlu Hatice , Barner-Kowollik Christopher 
Published: October 2019

AbstractWe introduce the guanidine-based superbase 1,5,7-triaza-bicyclo-[4.4.0]dec-5-ene (TBD) as efficient enabler for chemiluminescence (CL) based on luminol in a simple, ready-to-use two component system. The strong CL is generated by the superbase’s properties as peroxidase mimetic and bifunctional coreactant. The herein established concept allows for CL enabling molecules (superbases) to be readily implemented in larger molecular structures, including in polymers.
Lowered anti-beta1 adrenergic receptor antibody concentrations may have prognostic significance in acute coronary syndrome
Authors: Ernst Diana , Westerbergh Johan , Sogkas Georgios , Jablonka Alexandra , Ahrenstorf Gerrit , Schmidt Reinhold Ernst , Heidecke Harald , Wallentin Lars , Riemekasten Gabriela , Witte Torsten 
Published: October 2019

AbstractAlthough several risk factors exist for acute coronary syndrome (ACS) no biomarkers for survival or risk of re-infarction have been validated. Previously, reduced serum concentrations of anti-ß1AR Ab have been implicated in poorer ACS outcomes. This study further evaluates the prognostic implications of anti-ß1AR-Ab levels at the time of ACS onset. Serum anti-ß1AR Ab concentrations were measured in randomly selected patients from within the PLATO cohort. Stratification was performed according to ACS event: ST-elevation myocardial infarct (STEMI) vs. non-ST elevation myocardial infarct (NSTEMI). Antibody concentrations at ACS presentation were compared to 12-month all-cause and cardiovascular mortality, as well as 12-month re-infarction. Sub-analysis, stratifying for age and the correlation between antibody concentration and conventional cardiac risk-factors was subsequently performed. Serum anti-ß1AR Ab concentrations were measured in 400/799 (50%) STEMI patients and 399 NSTEMI patients. Increasing anti-ß1AR Ab concentrations were associated with STEMI (p = 0.001). Across all ACS patients, no associations between anti-ß1AR Ab concentration and either all-cause cardiovascular death or myocardial re-infarction (p = 0.14) were evident. However among STEMI patients ≤60 years with anti-ß1AR Ab concentration <median higher rates of re-infarction were observed, compared to those with anti-ß1AR Ab concentrations > median (14/198 (7.1%) vs. 2/190 (1.1%)); p = 0.01). Similarly, the same sub-group demonstrated greater risk of cardiovascular death in year 1, including re-infarction and stroke (22/198 (11.1%) vs. 10/190 (5.3%); p = 0.017). ACS Patients ≤60 years, exhibiting lower concentrations of ß1AR Ab carry a greater risk for early re-infarction and cardiovascular death. Large, prospective studies quantitatively assessing the prognostic relevance of Anti-ß1AR Ab levels should be considered.
Disruption of hmgA by DNA Duplication is Responsible for Hyperpigmentation in a Vibrio anguillarum Strain
Authors: Batallones Veronica , Fernandez Jennifer , Farthing Brett , Shoemaker Jordan , Qian Keizen Li , Phan Kimberly , Fung Eric , Rivera Ashley , Van Kevin , de la Cruz Francesca , Ferreri Alexandra J. , Burinski Krystle , Zhang Jackie , Lizarraga Vicente , Doan Kevin , Rocha Kenneth , Traglia German , Ramirez Maria S. , Tolmasky Marcelo E. 
Published: October 2019

AbstractVibrio anguillarum 531A, isolated from a diseased fish in the Atlantic Ocean, is a mixture composed of about 95 and 5% of highly pigmented cells (strain 531Ad) and cells with normal levels of pigmentation (strain 531Ac), respectively. Analysis of the V. anguillarum 531Ad DNA region encompassing genes involved in the tyrosine metabolism showed a 410-bp duplication within the hmgA gene that results in a frameshift and early termination of translation of the homogentisate 1,2-dioxygenase. We hypothesized that this mutation results in accumulation of homogentisate that is oxidized and polymerized to produce pyomelanin. Introduction in E. coli of recombinant clones carrying the V. anguillarum hppD (4-hydroxyphenylpyruvate-dioxygenase), and a mutated hmgA produced brown colored colonies. Complementation with a recombinant clone harboring hmgA restored the original color to the colonies confirming that in the absence of homogentisate 1,2-dioxygenase the intermediary in tyrosine catabolism homogentisate accumulates and undergoes nonenzymatic oxidation and polymerization resulting in high amounts of the brown pigment. Whole-genome sequence analysis showed that V. anguillarum 531 Ac and 531Ad differ in the hmgA gene mutation and 23 mutations, most of which locate to intergenic regions and insertion sequences.
Glycerol Monolaurate Contributes to the Antimicrobial and Anti-inflammatory Activity of Human Milk
Authors: Schlievert Patrick M. , Kilgore Samuel H. , Seo Keun Seok , Leung Donald Y. M. 
Published: October 2019

AbstractHuman milk has antimicrobial compounds and immunomodulatory activities. We investigated glycerol monolaurate (GML) in human milk versus bovine milk and infant formula for antimicrobial and anti-inflammatory activities. Human milk contained approximately 3000 µg/ml of GML, compared to 150 μg/ml in bovine milk and none in infant formula. For bacteria tested (Staphylococcus aureus, Bacillus subtilis, Clostridium perfringens, Escherichia coli), except Enterococcus faecalis, human milk was more antimicrobial than bovine milk and formula. The Enterococcus faecalis strain, which was not inhibited, produced reutericyclin, which is an analogue of GML and functions as a growth stimulant in bacteria that produce it. Removal of GML and other lipophilic molecules from human milk by ethanol extraction resulted in a loss of antibacterial activity, which was restored by re-addition of GML. GML addition caused bovine milk to become antimicrobial. Human milk but not bovine milk or formula inhibited superantigen and bacterial-induced IL-8 production by model human epithelial cells. GML may contribute beneficially to human milk compared to bovine milk or infant formula.
Thermal engineering of stone increased prehistoric toolmaking skill
Authors: Mraz Veronica , Fisch Mike , Eren Metin I. , Lovejoy C. Owen , Buchanan Briggs 
Published: October 2019

AbstractIntentional heat treating of toolstone has been documented to have begun at least by 70 K BP; however, the advantages of such treatment have been debated for decades. There are two schools of thought with regard to its purpose. One, is that it merely reduces the force required for flake propagation. A second is that it also alters flake morphological properties. We systematically tested these hypotheses by generating flakes from cores exposed to three different temperatures (ambient, 300 °C, and 350 °C) using automated propagation procedures that bypassed any human agency. While the force propagation magnitude is altered by heat treatment, the flakes were not. We examined these flakes according to nine measures of morphology. None differed significantly or systematically within the three categories. While our results confirm that heat treatment does reduce the force needed for flake propagation, they also demonstrate that such treatment has no significant effect on major morphological aspects of flake form.
Somatic substitution signature as an innovative tool in lung cancer diagnosis
Authors: Busca Stéphane , Salleron Julia , Boidot Romain , Merlin Jean-Louis , Harlé Alexandre 
Published: October 2019

AbstractDiagnosis of lung cancer can sometimes be challenging and is of major interest since effective molecular-guided therapies are available. Compounds of tobacco smoke may generate a specific substitutional signature in lung, which is the most exposed organ. To predict whether a tumor is of lung origin or not, we developed and validated the EASILUNG (Exome And SIgnature LUNG) test based on the relative frequencies of somatic substitutions on coding non-transcribed DNA strands from whole-exome sequenced tumors. Data from 7,796 frozen tumor samples (prior to any treatment) from 32 TCGA solid cancer groups were used for its development. External validation was carried out on a local dataset of 196 consecutive routine exome results. Eight out of the 12 classes of substitutions were required to compute the EASILUNG signature that demonstrated good calibration and good discriminative power with a sensitivity of 83% and a specificity of 72% after recalibration on the external validation dataset. This innovative test may be helpful in medical decision-making in patients with unknown primary tumors potentially of lung origin and in the diagnosis of lung cancer in smokers.
Pro-oncogenic, intra host viral quasispecies in Diffuse large B cell lymphoma patients with occult Hepatitis B Virus infection
Authors: Sinha Mahua , Sundar Keerthana , Premalata C. S. , Asati Vikas , Murali Alka , Bajpai Akhilesh Kumar , Davuluri Sravanthi , Acharya Kshitish K. , Lakshmaiah K. C. , Babu K. Govind , Jacob Linu A. , Nandan Dharam , Velayutham Dinesh , Datta Sibnarayan , Jayshree R. S. 
Published: October 2019

AbstractNon Hodgkin lymphoma, predominantly Diffuse Large B-cell Lymphoma (DLBCL) has been reported to have a significant association with Hepatitis B virus (HBV). We investigated the presence of different gene segments of HBV in plasma, B-cells and tumor tissues from DLBCL patients and explored the genetic variability of HBV within and across different compartments in a host using Next Generation Sequencing. Despite all 40 patients being HBV seronegative, 68% showed evidence of occult HBV. Sequencing of these gene segments revealed inter-compartment viral variants in 26% of them, each with at least one non-synonymous mutation. Between compartments, core gene variants revealed Arg94Leu, Glu86Arg and Ser41Thr while X gene variants revealed Phe73Val, Ala44Val, Ser146Ala and Ser147Pro. In tumor compartments per se, several mis-sense mutations were detected, notably the classic T1762A/A1764G mutation in the basal core promoter. In addition, a virus surface antigen mis-sense mutation resulting in M125T was detected in all the samples and could account for surface antigen negativity and occult HBV status. It would be interesting to further explore if a temporal accumulation of viral variants within a favored niche, like patients’ lymphocytes, could bestow survival advantage to the virus, and if certain pro-oncogenic HBV variants could drive lymphomagenesis in DLBCL.
Temperature Activated Dimensionality Crossover in the Nucleation of Quantum Dots by Droplet Epitaxy on GaAs(111)A Vicinal Substrates
Authors: Tuktamyshev Artur , Fedorov Alexey , Bietti Sergio , Tsukamoto Shiro , Sanguinetti Stefano 
Published: October 2019

AbstractA temperature activated crossover between two nucleation regimes is observed in the behavior of Ga droplet nucleation on vicinal GaAs(111)A substrates with a miscut of 2° towards $$(\bar{1}\bar{1}2)$$
(

1
¯

1
¯

2
)
. At low temperature (<400 °C) the droplet density dependence on temperature and flux is compatible with droplet nucleation by two-dimensional diffusion. Increasing the temperature, a different regime is observed, whose scaling behavior is compatible with a reduction of the dimensionality of the nucleation regime from two to one dimension. We attribute such behavior to a presence of finite width terraces and a sizeable Ehrlich-Schwöbel barrier at the terrace edge, which hinders adatom diffusion in the direction perpendicular to the steps.
Morphological changes of the pancreas after pancreaticoduodenectomy
Authors: Quesada Rita , Simón Clara , Radosevic Aleksandar , Poves Ignasi , Grande Luis , Burdío Fernando 
Published: October 2019

AbstractThe aim of this retrospective study was thus to evaluate postoperative morphological changes in the remnant pancreas after pancreaticoduodenectomy (PD) associated with postoperative pancreatic fistula (POPF). Fifty-one patients subjected to PD were enrolled in the study and allocated into 2 groups according to the presence (n = 16) or absence of POPF (n = 35). A morphological evaluation of the pancreas was conducted for up to a 20 months follow-up on CT scans and compared between groups. No significant differences were observed in morphology between the groups at the different preoperative and PO intervals, regardless of the clinical relevance of the POPF or POPF grade. However, in the overall patient analysis we observed a significant reduction of the entire pancreas over time. In fact, thickness decreased 0.4 mm/month, length 1.2 mm/month and volume 1.17 cm3/month over the PO. The impact of age, POPF, type of anastomosis, surgical technique and PO follow-up (time) was evaluated in a multivariate analysis using the general linear model, but only PO follow-up had a significant influence on the final model (p < 0.001). A significant reduction on pancreatic parenchyma (thickness, length and volume) occurs after PD with no significant differences between patients with or without POPF.
SMRT sequencing of full-length transcriptome of seagrasses Zostera japonica
Authors: Chen Siting , Qiu Guanglong , Yang Mingliu 
Published: October 2019

AbstractSeagrass meadows are among the four most productive marine ecosystems in the world. Zostera japonica (Z. japonica) is the most widely distributed species of seagrass in China. However, there is no reference genome or transcriptome available for Z. japonica, impeding progress in functional genomic and molecular ecology studies in this species. Temperature is the main factor that controls the distribution and growth of seagrass around the world, yet how seagrass responds to heat stress remains poorly understood due to the lack of genomic and transcriptomic data. In this study, we applied a combination of second- and third-generation sequencing technologies to sequence full-length transcriptomes of Z. japonica. In total, we obtained 58,134 uniform transcripts, which included 46,070 high-quality full-length transcript sequences. We identified 15,411 simple sequence repeats, 258 long non-coding RNAs and 28,038 open reading frames. Exposure to heat elicited a complex transcriptional response in genes involved in posttranslational modification, protein turnover and chaperones. Overall, our study provides the first large-scale full-length trascriptome in Zostera japonica, allowing for structural, functional and comparative genomics studies in this important seagrass species. Although previous studies have focused specifically on heat shock proteins, we found that examination of other heat stress related genes is important for studying response to heat stress in seagrass. This study provides a genetic resource for the discovery of genes related to heat stress tolerance in this species. Our transcriptome can be further utilized in future studies to understand the molecular adaptation to heat stress in Zostera japonica.
Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn
Authors: Wang Wuhong , Wang Jinglei , Wei Qingzhen , Li Biyuan , Zhong Xinmin , Hu Tianhua , Hu Haijiao , Bao Chonglai 
Published: October 2019

AbstractCircular RNA (circRNA) is a newly discovered non-coding RNA, which play significant roles in the function and transcriptional regulation of microRNA. To date, in Chinese cabbage, the functional characteristic of circRNAs in response to calcium deficiency-induced tip-burn have not been reported. In this study, 730 circRNAs were isolated from Chinese cabbage leaves, of which 23 and 22 were differentially expressed in different calcium deficiency stages compared with the control. Forty-six host genes of the differentially expressed circRNAs were identified, and one circRNA was found to act as miRNAs sponges. Based on the functional analysis of host genes and target mRNAs of the corresponding miRNAs, the identified circRNAs might participated in response to stimulus, electron carrier activity, ATPase activity, cell wall metabolism, transcription factors and plant hormone signal transduction. ABF2, a positive regulator of the abiotic stress response in the abscisic acid (ABA) pathway, may play a role in calcium deficiency tolerance through a circRNA regulatory pathway. Correspondingly, the concentration of ABA is also increased during the Ca2+ deficiency stress. Our results suggest that circRNAs participate in a broad range of biological processes and physiological functions in the response to calcium deficiency-induced tip-burn and provide a basis for further studies of the biological roles that circRNAs play in the plant stress response.
Establishment of a diabetes mellitus type 1 model in the common marmoset
Authors: Yuan Wenji , Fukuda Satsuki , Inoue Takashi , Okochi Hitoshi , Sasaki Erika , Shimoda Masayuki 
Published: October 2019

AbstractCommon marmosets have attracted considerable attention as a small standard primate model in biomedical research. However, no marmoset diabetes model is available. Here, we established a marmoset diabetes model via the combination of partial pancreatectomy and intravenous streptozotocin (STZ). A partial pancreatectomy was performed in 11 common marmosets and multiple STZ doses were intravenously administered. Diabetes was diagnosed upon sustained hyperglycaemia (nonfasting blood glucose level >200 mg/dl). Blood glucose and biochemistry were periodically assessed, in addition to glucose tolerance testing, continual blood glucose determination using a continuous glucose monitoring system, urine testing and histological evaluation. In 8 of the 11 animals (73%), diabetes mellitus was induced. The diabetic marmosets also showed abnormal intravenous and oral glucose tolerance test results. Blood glucose levels decreased in response to human insulin administration. The hyperglycaemic state was irreversible and persisted for more than 3 months, and the animals’ condition was manageable via daily insulin administration. Thus, diabetes can be successfully induced and maintained in the common marmoset via partial pancreatectomy and STZ administration. This protocol effectively generates a valuable animal model for studying disease pathogenesis, risk factors and therapeutic interventions, including islet transplantation.
Long-term efficacy of imatinib mesylate in patients with advanced Tenosynovial Giant Cell Tumor
Authors: Verspoor F. G. M. , Mastboom M. J. L. , Hannink G. , Maki R. G. , Wagner A. , Bompas E. , Desai J. , Italiano A. , Seddon B. M. , van der Graaf W. T. A. , Blay J.-Y. , Brahmi M. , Eberst L. , Stacchiotti S. , Mir O. , van de Sande M. A. J. , Gelderblom H. , Cassier P. A. 
Published: October 2019

AbstractTenosynovial giant cell tumors (TGCT), are rare colony stimulating factor-1(CSF-1)-driven proliferative disorders affecting joints. Diffuse-type TGCT often causes significant morbidity due to local recurrences necessitating multiple surgeries. Imatinib mesylate (IM) blocks the CSF-1 receptor. This study investigated the long term effects of IM in TGCT. We conducted an international multi-institutional retrospective study to assess the activity of IM: data was collected anonymously from individual patients with locally advanced, recurrent or metastatic TGCT. Sixty-two patients from 12 institutions across Europe, Australia and the United States were identified. Four patients with metastatic TGCT progressed rapidly on IM and were excluded for further analyses. Seventeen of 58 evaluable patients achieved complete response (CR) or partial response (PR). One- and five-year progression-free survival rates were 71% and 48%, respectively. Thirty-eight (66%) patients discontinued IM after a median of 7 (range 1–80) months. Reported adverse events in 45 (78%) patients were among other edema (48%) and fatigue (50%), mostly grade 1–2 (89%). Five patients experienced grade 3–4 toxicities. This study confirms, with additional follow-up, the efficacy of IM in TGCT. In responding cases we confirmed prolonged IM activity on TGCT symptoms even after discontinuation, but with high rates of treatment interruption and additional treatments.
Multiple air-bubble enhanced oil rupture on nanostructured cellulose fabric for easy-oil cleaning fouled in a dry state
Authors: Kim Min-Sung , Ko Tae-Jun , Kim Seong Jin , Lee Young-A. , Oh Kyu Hwan , Moon Myoung-Woon 
Published: October 2019

AbstractNanostructured cellulose fabric with an air-bubble-enhanced anti-oil fouling property is introduced for quick oil-cleaning by water even with the surface fouled by oil before water contact under a dry state. It is very challenging to recover the super-hydrophilicity because once the surface is oil-fouled, it is hard to be re-wetted by water. Anti-oil-fouling under a dry state was realized through two main features of the nanostructured, porous fabric: a low solid fraction with high-aspect-ratio nanostructures significantly increasing the retracting forces, and trapped multiscale air bubbles increasing the buoyancy and backpressure for an oil-layer rupture. The nanostructures were formed on cellulose-based rayon microfibers through selective etching with oxygen plasma, forming a nanoscale open-pore structure. Viscous crude oil fouled on a fabric under a dry state was cleaned by immersion into water owing to a higher water affinity of the rayon material and low solid fraction of the high-aspect-ratio nanostructures. Air bubbles trapped in dry porous fibers and nanostructures promote oil detachment from the fouled sites. The macroscale bubbles add buoyancy on top of the oil droplets, enhancing the oil receding at the oil-water-solid interface, whereas the relatively smaller microscale bubbles induce a backpressure underneath the oil droplets. The oil-proofing fabric was used for protecting underwater conductive sensors, allowing a robot fish to swim freely in oily water.
Altering social cue perception impacts honey bee aggression with minimal impacts on aggression-related brain gene expression
Authors: Harrison James W. , Palmer Joseph H. , Rittschof Clare C. 
Published: October 2019

AbstractGene expression changes resulting from social interactions may give rise to long term behavioral change, or simply reflect the activity of neural circuitry associated with behavioral expression. In honey bees, social cues broadly modulate aggressive behavior and brain gene expression. Previous studies suggest that expression changes are limited to contexts in which social cues give rise to stable, relatively long-term changes in behavior. Here we use a traditional beekeeping approach that inhibits aggression, smoke exposure, to deprive individuals of aggression-inducing olfactory cues and evaluate whether behavioral changes occur in absence of expression variation in a set of four biomarker genes (drat, cyp6g1/2, GB53860, inos) associated with aggression in previous studies. We also evaluate two markers of a brain hypoxic response (hif1α, hsf) to determine whether smoke induces molecular changes at all. We find that bees with blocked sensory perception as a result of smoke exposure show a strong, temporary inhibition of aggression relative to bees allowed to perceive normal social cues. However, blocking sensory perception had minimal impacts on aggression-relevant gene expression, althought it did induce a hypoxic molecular response in the brain. Results suggest that certain genes differentiate social cue-induced changes in aggression from long-term modulation of this phenotype.