bluuebunny/crossref_metadata_2025_split huggingface dataset:
Relaxation dynamics in magnetic antidot lattice arrays of Co/Pt with perpendicular anisotropy
Authors: Mallick Sougata , Mishra Swapna Sindhu , Bedanta Subhankar 
Published: July 2018

AbstractThe topic of magnetic antidot lattice (MAL) arrays has drawn attention from both fundamental research as well as from application point of view. MAL arrays are promising candidates for making domain engineering in thin films. For various applications it is necessary to understand the magnetization reversal mechanism as well as the relaxation dynamics. In this context we have studied magnetic antidot lattice (MAL) arrays of Co/Pt with perpendicular anisotropy fabricated by combination of photolithography and sputtering deposition. Kerr microscopy domain imaging for the continuous thin film reveals the formation of typical bubble domains of perpendicular media with high anisotropy. However, presence of periodic holes in the MAL arrays lead to nucleation of localised smaller bubbles. We have performed simulations using object oriented micromagnetic framework (OOMMF) which reproduced the experimental results even considering antidot arrays in nano dimension. In literature it has been reported that in MAL arrays with in-plane anisotropy the domain propagation gets significantly hindered by the presence of the holes. However here we show that in perpendicularly magnetized Co/Pt the propagation of the domain walls is not restricted by the presence of the antidots. Further we have performed magnetic relaxation study and found that the global relaxation time for the MAL arrays of Co/Pt is faster as compared to it’s parent thin film. This behavior is opposite to what has been observed in literature for in-plane magnetized MAL arrays.
Unusual electronic and vibrational properties in the colossal thermopower material FeSb2
Authors: Homes C. C. , Du Q. , Petrovic C. , Brito W. H. , Choi S. , Kotliar G. 
Published: July 2018

AbstractThe iron antimonide FeSb2 possesses an extraordinarily high thermoelectric power factor at low temperature, making it a leading candidate for cryogenic thermoelectric cooling devices. However, the origin of this unusual behavior is controversial, having been variously attributed to electronic correlations as well as the phonon-drag effect. The optical properties of a material provide information on both the electronic and vibrational properties. The optical conductivity reveals an anisotropic response at room temperature; the low-frequency optical conductivity decreases rapidly with temperature, signalling a metal-insulator transition. One-dimensional semiconducting behavior is observed along the b axis at low temperature, in agreement with first-principle calculations. The infrared-active lattice vibrations are also symmetric and extremely narrow, indicating long phonon relaxation times and a lack of electron-phonon coupling. Surprisingly, there are more lattice modes along the a axis than are predicted from group theory; several of these modes undergo significant changes below about 100 K, hinting at a weak structural distortion or phase transition. While the extremely narrow phonon line shapes favor the phonon-drag effect, the one-dimensional behavior of this system at low temperature may also contribute to the extraordinarily high thermopower observed in this material.
Novel Arginine-containing Macrocyclic MMP Inhibitors: Synthesis, 99mTc-labeling, and Evaluation
Authors: Ye Yunpeng , Toczek Jakub , Gona Kiran , Kim Hye-Yeong , Han Jinah , Razavian Mahmoud , Golestani Reza , Zhang Jiasheng , Wu Terence L. , Ghosh Mousumi , Jung Jae-Joon , Sadeghi Mehran M. 
Published: July 2018

AbstractMatrix metalloproteinases (MMPs) are involved in tissue remodeling. Accordingly, MMP inhibitors and related radiolabeled analogs are important tools for MMP-targeted imaging and therapy in a number of diseases. Herein, we report design, synthesis, and evaluation of a new Arginine-containing macrocyclic hydroxamate analog, RYM, its hydrazinonicotinamide conjugate, RYM1 and 99mTc-labeled analog 99mTc-RYM1 for molecular imaging. RYM exhibited potent inhibition against a panel of recombinant human (rh) MMPs in vitro. RYM1 was efficiently labeled with 99mTcO4− to give 99mTc-RYM1 in a high radiochemical yield and high radiochemical purity. RYM1 and its decayed labeling product displayed similar inhibition potencies against rhMMP-12. Furthermore, 99mTc-RYM1 exhibited specific binding with lung tissue from lung-specific interleukin-13 transgenic mice, in which MMP activity is increased in conjunction with tissue remodeling and inflammation. The results support further development of such new water-soluble Arginine-containing macrocyclic hydroxamate MMP inhibitors for targeted imaging and therapy.
Association between cognitive impairment and poor antihypertensive medication adherence in elderly hypertensive patients without dementia
Authors: Cho Mi Hee , Shin Dong Wook , Chang Sung-A , Lee Ji Eun , Jeong Su-Min , Kim Sang Hyuck , Yun Jae Moon , Son Kiyoung 
Published: July 2018

AbstractAdherence to antihypertensive medication is a critical factor to control blood pressure and prevent complications. However, cognitive impairment can negatively affect medication adherence. In this study, we investigated the association between cognitive function and antihypertensive medication adherence among elderly hypertensive patients using the Korean National Health Insurance Service National Sample Cohort Data of the Elderly Cohort. The study included 20,071 elderly hypertensive patients and the prevalence of poor medication adherence to antihypertensive medications was 16.4%. A multivariate logistic regression analysis showed that lower cognitive function was associated with poor medication adherence (adjusted odds ratio 0.980, 95% confidence interval 0.961–0.999). Additionally, high income levels, living in metropolitan areas, and comorbidities (such as stroke, coronary heart disease, diabetes, and dyslipidemia) were positively associated with medication adherence, while patients diagnosed with cancers showed poor medication adherence. Our study demonstrated that cognitive impairment is a possible risk factor for poor antihypertensive medication adherence, even in patients without dementia. Thus, clinicians involved with geriatric care should monitor patients’ cognitive function and medication adherence. And if a patient shows cognitive impairment, clinicians need to educate patients and caregivers about the importance of proper adherence, and consider proper interventions to optimize the cognitive function of elderly patients.
Full-length transcriptome of Misgurnus anguillicaudatus provides insights into evolution of genus Misgurnus
Authors: Yi Shaokui , Zhou Xiaoyun , Li Jie , Zhang Manman , Luo Shuangshuang 
Published: July 2018

AbstractReconstruction and annotation of transcripts, particularly for a species without reference genome, plays a critical role in gene discovery, investigation of genomic signatures, and genome annotation in the pre-genomic era. This study generated 33,330 full-length transcripts of diploid M. anguillicaudatus using PacBio SMRT Sequencing. A total of 6,918 gene families were identified with two or more isoforms, and 26,683 complete ORFs with an average length of 1,497 bp were detected. Totally, 1,208 high-confidence lncRNAs were identified, and most of these appeared to be precursor transcripts of miRNAs or snoRNAs. Phylogenetic tree of the Misgurnus species was inferred based on the 1,905 single copy orthologous genes. The tetraploid and diploid M. anguillicaudatus grouped into a clade, and M. bipartitus showed a closer relationship with the M. anguillicaudatus. The overall evolutionary rates of tetraploid M. anguillicaudatus were significantly higher than those of other Misgurnus species. Meanwhile, 28 positively selected genes were identified in M. anguillicaudatus clade. These positively selected genes may play critical roles in the adaptation to various habitat environments for M. anguillicaudatus. This study could facilitate further exploration of the genomic signatures of M. anguillicaudatus and provide potential insights into unveiling the evolutionary history of tetraploid loach.
Global genomic diversity and conservation priorities for domestic animals are associated with the economies of their regions of origin
Authors: Zhang Min , Peng Wei-Feng , Hu Xiao-Ju , Zhao Yong-Xin , Lv Feng-Hua , Yang Ji 
Published: July 2018

AbstractDomestic animals play a key role in human survival and the development of civilization. However, the genetic resources of domestic animals are facing an alarming rate of erosion due to socioeconomic changes, economic globalization and financial constraints. In this study, through genome-wide SNP analysis, we estimated the heterozygosity, inbreeding coefficient, effective population size, and runs of homozygosity to identify the breeds facing the risk of extinction for sheep and cattle across the world. In particular, we quantified the contribution of 97 sheep breeds and 53 cattle breeds to genomic diversity (within-breed, between-breed and total) and prioritized the breeds for conservation. Additionally, we compared the average values of genomic diversity between breeds from regions (or countries) in different economic categories (underdeveloped, developing and developed), and found that breeds in developed regions exhibit significantly higher levels of total genomic diversity than those in underdeveloped and developing regions. Altogether, our results suggested that conservation priority should be given to breeds in developed regions to secure the future genomic diversity hotspots of domestic animal resources.
Interrupted reprogramming into induced pluripotent stem cells does not rejuvenate human mesenchymal stromal cells
Authors: Göbel Carolin , Goetzke Roman , Eggermann Thomas , Wagner Wolfgang 
Published: July 2018

AbstractReplicative senescence hampers application of mesenchymal stromal cells (MSCs) because it limits culture expansion, impairs differentiation potential, and hinders reliable standardization of cell products. MSCs can be rejuvenated by reprogramming into induced pluripotent stem cells (iPSCs), which is associated with complete erasure of age- and senescence-associated DNA methylation (DNAm) patterns. However, this process is also associated with erasure of cell-type and tissue-specific epigenetic characteristics that are not recapitulated upon re-differentiation towards MSCs. In this study, we therefore followed the hypothesis that overexpression of pluripotency factors under culture conditions that do not allow full reprogramming might reset senescence-associated changes without entering a pluripotent state. MSCs were transfected with episomal plasmids and either successfully reprogrammed into iPSCs or cultured in different media with continuous passaging every week. Overexpression of pluripotency factors without reprogramming did neither prolong culture expansion nor ameliorate molecular and epigenetic hallmarks of senescence. Notably, transfection resulted in immortalization of one cell preparation with gain of large parts of the long arm of chromosome 1. Taken together, premature termination of reprogramming does not result in rejuvenation of MSCs and harbours the risk of transformation. This approach is therefore not suitable to rejuvenate cells for cellular therapy.
Quantifying Topological Uncertainty in Fractured Systems using Graph Theory and Machine Learning
Authors: Srinivasan Gowri , Hyman Jeffrey D. , Osthus David A. , Moore Bryan A. , O’Malley Daniel , Karra Satish , Rougier Esteban , Hagberg Aric A. , Hunter Abigail , Viswanathan Hari S. 
Published: July 2018

AbstractFractured systems are ubiquitous in natural and engineered applications as diverse as hydraulic fracturing, underground nuclear test detection, corrosive damage in materials and brittle failure of metals and ceramics. Microstructural information (fracture size, orientation, etc.) plays a key role in governing the dominant physics for these systems but can only be known statistically. Current models either ignore or idealize microscale information at these larger scales because we lack a framework that efficiently utilizes it in its entirety to predict macroscale behavior in brittle materials. We propose a method that integrates computational physics, machine learning and graph theory to make a paradigm shift from computationally intensive high-fidelity models to coarse-scale graphs without loss of critical structural information. We exploit the underlying discrete structure of fracture networks in systems considering flow through fractures and fracture propagation. We demonstrate that compact graph representations require significantly fewer degrees of freedom (dof) to capture micro-fracture information and further accelerate these models with Machine Learning. Our method has been shown to improve accuracy of predictions with up to four orders of magnitude speedup.
Coherent THz Emission Enhanced by Coherent Synchrotron Radiation Wakefield
Authors: Di Mitri S. , Perucchi A. , Adhlakha N. , Di Pietro P. , Nicastro S. , Roussel E. , Spampinati S. , Veronese M. , Allaria E. , Badano L. , Cudin I. , De Ninno G. , Diviacco B. , Gaio G. , Gauthier D. , Giannessi L. , Lupi S. , Penco G. , Piccirilli F. , Rebernik P. , Spezzani C. , Trovò M. 
Published: July 2018

AbstractWe demonstrate that emission of coherent transition radiation by a ∼1 GeV energy-electron beam passing through an Al foil is enhanced in intensity and extended in frequency spectral range, by the energy correlation established along the beam by coherent synchrotron radiation wakefield, in the presence of a proper electron optics in the beam delivery system. Analytical and numerical models, based on experimental electron beam parameters collected at the FERMI free electron laser (FEL), predict transition radiation with two intensity peaks at ∼0.3 THz and ∼1.5 THz, and extending up to 8.5 THz with intensity above 20 dB w.r.t. the main peak. Up to 80-µJ pulse energy integrated over the full bandwidth is expected at the source, and in agreement with experimental pulse energy measurements. By virtue of its implementation in an FEL beam dump line, this work promises dissemination of user-oriented multi-THz beamlines parasitic and self-synchronized to EUV and x-ray FELs.
A four year survey reveals a coherent pattern between occurrence of fruit bodies and soil amoebae populations for nivicolous myxomycetes
Authors: Dahl Mathilde Borg , Shchepin Oleg , Schunk Christian , Menzel Annette , Novozhilov Yuri K. , Schnittler Martin 
Published: July 2018

AbstractAmong soil-inhabiting protists, myxomycetes stand out by their macroscopic fructifications which have allowed studies on their ecology and distribution for more than two hundred years. One of the most distinct ecological guilds in myxomycetes are the nivicolous or “snowbank” myxomycete species, which produce fruit bodies at the edge of melting snowbanks in spring. Relationship between the occurrence of fructifications and myxamoebae remain unknown. In this study we used modern molecular techniques, by direct DNA amplification from soil extracts (NGS metabarcoding) to compare the distribution of soil-inhabiting myxamoebae found in 2016 with fructifications from the same sites collected over the course of four years (2013, 2015–17) along an elevational transect in the northern German Alps. A coherent community composition between fructification and soil myxamoebae, though with species-specific differences in relative abundance, was revealed. Although patterns varied among species, myxamoebae were found at both low and high elevations, whereas fruit bodies were mainly found at higher elevations, likely explained by the presence of a stable and long-lasting snow cover. In addition, a year to year comparison of fructification records support the hypothesis that the abundance of fructifications strongly depends on the onset of snowfall in the previous autumn and the soil temperature regime throughout the winter.
Clonal expansion of mtDNA deletions: different disease models assessed by digital droplet PCR in single muscle cells
Authors: Trifunov Selena , Pyle Angela , Valentino Maria Lucia , Liguori Rocco , Yu-Wai-Man Patrick , Burté Florence , Duff Jennifer , Kleinle Stephanie , Diebold Isabel , Rugolo Michela , Horvath Rita , Carelli Valerio 
Published: July 2018

AbstractDeletions in mitochondrial DNA (mtDNA) are an important cause of human disease and their accumulation has been implicated in the ageing process. As mtDNA is a high copy number genome, the coexistence of deleted and wild-type mtDNA molecules within a single cell defines heteroplasmy. When deleted mtDNA molecules, driven by intracellular clonal expansion, reach a sufficiently high level, a biochemical defect emerges, contributing to the appearance and progression of clinical pathology. Consequently, it is relevant to determine the heteroplasmy levels within individual cells to understand the mechanism of clonal expansion. Heteroplasmy is reflected in a mosaic distribution of cytochrome c oxidase (COX)-deficient muscle fibers. We applied droplet digital PCR (ddPCR) to single muscle fibers collected by laser-capture microdissection (LCM) from muscle biopsies of patients with different paradigms of mitochondrial disease, characterized by the accumulation of single or multiple mtDNA deletions. By combining these two sensitive approaches, ddPCR and LCM, we document different models of clonal expansion in patients with single and multiple mtDNA deletions, implicating different mechanisms and time points for the development of COX deficiency in these molecularly distinct mitochondrial cytopathies.
A randomised, double-blind, placebo-controlled parallel trial of closed-loop infraslow brain training in food addiction
Authors: Leong Sook Ling , Vanneste Sven , Lim Joyce , Smith Mark , Manning Patrick , De Ridder Dirk 
Published: July 2018

AbstractThe posterior cingulate cortex (PCC) is involved in food craving in obese food addicted individuals. This randomised, double-blind, placebo-controlled parallel study explored the potential therapeutic effects of infraslow neurofeedback (ISF-NF) on food craving targeting the PCC in obese women with symptoms of food addiction. Participants received six sessions of either ISF-NF (n = 11) or placebo (n = 10) over a three-week period. There were no reported adverse effects. Electrophysiologically, there were significant increases in infraslow activity (p = 0.0002) and infraslow/beta nesting (p < 0.001) in the PCC in the ISF-NF group (mean r = 0.004 ± 0.002) compared to placebo (mean r = 0.02 ± 0.002) two days after the last intervention. Also, there was a significant decrease in different dimensions of state food craving compared to baseline and to placebo. Findings suggest that source localized IFS-NF results in electrophysiological changes and may be associated with reduced food craving. This trial is registered at www.anzctr.org.au, identifier, ACTRN12617000601336. This study was funded by the Otago Medical Research Grant: CT375.
Importance of household-level risk factors in explaining micro-epidemiology of asymptomatic malaria infections in Ratanakiri Province, Cambodia
Authors: Bannister-Tyrrell Melanie , Srun Set , Sluydts Vincent , Gryseels Charlotte , Mean Vanna , Kim Saorin , Sokny Mao , Peeters Grietens Koen , Coosemans Marc , Menard Didier , Tho Sochantha , Van Bortel Wim , Durnez Lies 
Published: July 2018

AbstractHeterogeneity in malaria risk is considered a challenge for malaria elimination. A cross-sectional study was conducted to describe and explain micro-epidemiological variation in Plasmodium infection prevalence at household and village level in three villages in Ratanakiri Province, Cambodia. A two-level logistic regression model with a random intercept fitted for each household was used to model the odds of Plasmodium infection, with sequential adjustment for individual-level then household-level risk factors. Individual-level risk factors for Plasmodium infection included hammock net use and frequency of evening outdoor farm gatherings in adults, and older age in children. Household-level risk factors included house wall material, crop types, and satellite dish and farm machine ownership. Individual-level risk factors did not explain differences in odds of Plasmodium infection between households or between villages. In contrast, once household-level risk factors were taken into account, there was no significant difference in odds of Plasmodium infection between households and between villages. This study shows the importance of ongoing indoor and peridomestic transmission in a region where forest workers and mobile populations have previously been the focus of attention. Interventions targeting malaria risk at household level should be further explored.
Treatment for Residual Rhotic Errors With High- and Low-Frequency Ultrasound Visual Feedback: A Single-Case Experimental Design
Authors: Preston Jonathan L. , McAllister Tara , Phillips Emily , Boyce Suzanne , Tiede Mark , Kim Jackie S. , Whalen Douglas H. 
Published: July 2018

PurposeThe aim of this study was to explore how the frequency with which ultrasound visual feedback (UVF) is provided during speech therapy affects speech sound learning.MethodTwelve children with residual speech errors affecting /ɹ/ participated in a multiple-baseline across-subjects design with 2 treatment conditions. One condition featured 8 hr of high-frequency UVF (HF; feedback on 89% of trials), whereas the other included 8 hr of lower-frequency UVF (LF; 44% of trials). The order of treatment conditions was counterbalanced across participants. All participants were treated on vocalic /ɹ/. Progress was tracked by measuring generalization on /ɹ/ in untreated words.ResultsAfter the 1st treatment phase, participants who received the HF condition outperformed those who received LF. At the end of the 2-phase treatment, within-participant comparisons showed variability across individual outcomes in both HF and LF conditions. However, a group level analysis of this small sample suggested that participants whose treatment order was HF–LF made larger gains than those whose treatment order was LF–HF.ConclusionsThe order HF–LF may represent a preferred order for UVF in speech therapy. This is consistent with empirical work and theoretical arguments suggesting that visual feedback may be particularly beneficial in the early stages of acquiring new speech targets.