bluuebunny/crossref_metadata_2025_split huggingface dataset:
Birds of primary and secondary forest and shrub habitats in the peat swamp of Berbak National Park, Sumatra
Authors: Darras Kevin , Rahman Dedi , Sugito Waluyo , Mulyani Yeni , Prawiradilaga Dewi , Rozali Agus , Fitriawan Irfan , Tscharntke Teja 
Published: February 2018

Background: Tropical lowland rainforests are threatened by deforestation and degradation worldwide. Relatively little research has investigated the degradation of the forests of South-east Asia and its impact on biodiversity, and even less research has focused on the important peat swamp forests of Indonesia, which experienced major losses through severe fires in 2015. Methods: We acoustically sampled the avifauna of the Berbak National Park in 2013 in 12 sites split in three habitats: primary swamp forest, secondary swamp forest, and shrub swamp, respectively representing non-degraded, previously selectively logged, and burned habitats. We analysed the species richness, abundance, vocalisation activity, and community composition across acoustic counts, sites, feeding guilds and IUCN Red List categories. We also analysed community-weighted means of body mass, wing length, and distribution area. Results: The avifauna in the three habitats was remarkably similar in richness, abundance and vocalisation activity, and communities mainly differed due to a lower prevalence of understory insectivores (Old-World Babblers, Timaliidae) in shrub swamp. However primary forest retained twice as many conservation-worthy species as shrub swamp, which harboured heavier, probably more mobile species, with larger distributions than those of forest habitats. Conclusions: The National Park overall harboured higher bird abundances than nearby lowland rainforests. Protecting the remaining peat swamp forest in this little-known National Park should be a high conservation priority in the light of the current threats coming from wildlife trade, illegal logging, land use conversion, and man-made fires.
The role of CKIP-1 in osteoporosis development and treatment
Authors: Peng X. , Wu X. , Zhang J. , Zhang G. , Li G. , Pan X. 
Published: February 2018

Osteoporosis is a systemic skeletal disorder characterized by reduced bone mass and deterioration of bone microarchitecture, which results in increased bone fragility and fracture risk. Casein kinase 2-interacting protein-1 (CKIP-1) is a protein that plays an important role in regulation of bone formation. The effect of CKIP-1 on bone formation is mainly mediated through negative regulation of the bone morphogenetic protein pathway. In addition, CKIP-1 has an important role in the progression of osteoporosis. This review provides a summary of the recent studies on the role of CKIP-1 in osteoporosis development and treatment. Cite this article: X. Peng, X. Wu, J. Zhang, G. Zhang, G. Li, X. Pan. The role of CKIP-1 in osteoporosis development and treatment. Bone Joint Res 2018;7:173–178. DOI: 10.1302/2046-3758.72.BJR-2017-0172.R1.
A pilot hole does not reduce the strains or risk of fracture to the lateral cortex during and following a medial opening wedge high tibial osteotomy in cadaveric specimens
Authors: Bujnowski K. , Getgood A. , Leitch K. , Farr J. , Dunning C. , Burkhart T. A. 
Published: February 2018

Aim It has been suggested that the use of a pilot-hole may reduce the risk of fracture to the lateral cortex. Therefore the purpose of this study was to determine the effect of a pilot hole on the strains and occurrence of fractures at the lateral cortex during the opening of a high tibial osteotomy (HTO) and post-surgery loading. Materials and Methods A total of 14 cadaveric tibias were randomized to either a pilot hole (n = 7) or a no-hole (n = 7) condition. Lateral cortex strains were measured while the osteotomy was opened 9 mm and secured in place with a locking plate. The tibias were then subjected to an initial 800 N load that increased by 200 N every 5000 cycles, until failure or a maximum load of 2500 N. Results There was no significant difference in the strains on the lateral cortex during HTO opening between the pilot hole and no-hole conditions. Similarly, the lateral cortex and fixation plate strains were not significantly different during cyclic loading between the two conditions. Using a pilot hole did not significantly decrease the strains experienced at the lateral cortex, nor did it reduce the risk of fracture. Conclusions The nonsignificant differences found here most likely occurred because the pilot hole merely translated the stress concentration laterally to a parallel point on the surface of the hole. Cite this article: K. Bujnowski, A. Getgood, K. Leitch, J. Farr, C. Dunning, T. A. Burkhart. A pilot hole does not reduce the strains or risk of fracture to the lateral cortex during and following a medial opening wedge high tibial osteotomy in cadaveric specimens. Bone Joint Res 2018;7:166–172. DOI: 10.1302/2046-3758.72.BJR-2017-0337.R1.
Growth and Decline in Language and Phonological Memory Over Two Years Among Adolescents With Down Syndrome
Authors: Conners Frances A. , Tungate Andrew S. , Abbeduto Leonard , Merrill Edward C. , Faught Gayle G. 
Published: February 2018

Abstract
Forty-two adolescents with Down syndrome (DS) ages 10 to 21 years completed a battery of language and phonological memory measures twice, 2 years apart. Individual differences were highly stable across two years. Receptive vocabulary scores improved, there was no change in receptive or expressive grammar scores, and nonword repetition scores declined. Digit memory and expressive vocabulary scores improved among younger adolescents, but generally held steady among older adolescents. These patterns may reveal key points in development at which interventions may be best applied. Further research is needed to understand specific processes in tasks that appear to be slowing or declining during adolescence. They may be important for understanding early aging and dementia in DS.
Biological Variation of Creatinine, Cystatin C, and eGFR over 24 Hours
Authors: Hilderink Judith M , van der Linden Noreen , Kimenai Dorien M , Litjens Elisabeth J R , Klinkenberg Lieke J J , Aref Breshna M , Aziz Fahra , Kooman Jeroen P , Rennenberg Roger J M W , Bekers Otto , Koopmans Richard P , Meex Steven J R 
Published: February 2018

Abstract

BACKGROUND
Estimated glomerular filtration rate (eGFR) is widely used in clinical practice. This study assessed the within-subject biological variation (CVI) of different eGFR equations in people with chronic kidney disease (CKD) and people without CKD. The aims of this study were (a) to determine the 24-h biological variation profiles of creatinine, cystatin C, and eGFR and (b) to determine whether CVI of creatinine, cystatin C, and eGFR changes on deterioration of glomerular filtration.

METHODS
Hourly blood samples were analyzed from 37 individuals (17 without CKD, 20 with CKD) during 24 h. Creatinine (enzymatic method) and cystatin C were measured using a Cobas 8000 (Roche Diagnostics). eGFR was estimated using the Modification of Diet in Renal Disease and the Chronic Kidney Disease Epidemiology Collaboration based on creatinine and/or cystatin C. Plasma samples were stored at −80 °C before analysis. Outlier and homogeneity analyses were checked before performing a nested ANOVA to determine biological variation.

RESULTS
CVI of creatinine was higher in people without CKD than in those with CKD (6.4% vs 2.5%) owing primarily to the more profound effect of meat consumption on creatinine variability in individuals with lower baseline creatinine concentrations. Unlike creatinine, cystatin C concentrations were unaffected by meat consumption. Cystatin C showed some diurnal rhythmic variation and less in people with CKD. Reference change values (RCVs) of all eGFR equations were within 13% to 20% in both study groups.

CONCLUSIONS
Despite differences in CVI of creatinine, the CVI and RCV of the eGFR equations were relatively similar for people with or without CKD.
FORMULASI HUKUM, LANGKAH MENGATASI PROBLEMATIKA EKSEKUSI HAK TANGGUNGAN DALAM PENYELESAIAN KREDIT MACET
Authors: Susila Agus 
Published: February 2018

Artikel ini bertujuan untuk mengetahui dan menentukan Formulasi Hukum Dan Langkah-Langkah Untuk Mengatasi Problematika Eksekusi Hak Tanggungan Dalam Penyelesaian Kredit Macet. Penelitian ini merupakan penelitian normatif Sumber data berupa data sekunder yang terdiri atas bahan hukum primer dan bahan hukum sekunder. Hasil penelitian ini menunjukkan bahwa; Kedudukan Kreditur sebagai Pemegang Hak Tanggungan atas jaminan Sertifikat Hak Guna Bangunan (SHGB) yang masa atau jangka waktu berlakunya SHGB tersebut telah berakhir dan belum diperpanjang sehingga menyebabkan Hak Tanggungan yang melekat dalam SHGB tersebut menjadi hapus dan Debitur telah Wanprestasi kepada Kreditur. Sehingga diperlukan Formulasi Hukum Dan Langkah-Langkah Untuk Mengatasi Problematika Eksekusi Hak Tanggungan Dalam Penyelesaian Kredit Macet.
KEBIJAKAN PROGRAM REDISTRIBUSI TANAH BEKAS PERKEBUNAN DALAM MENUNJANG PEMBANGUNAN SOSIAL EKONOMI MASYARAKAT
Authors: Isnaeni Diyan 
Published: February 2018

Implementasi program redistribusi bekas tanah perkebunan dilakukan dengan cara mediasi. Kemudian pada tahun 2011dikeluarkanlah Surat Keputusan Landreform dan Surat Keputusan Konsolidasi Tanah (land Consolidation) dimana SK Landreform berisi tentang jumlah luas tanah yang diredistribusi adalah 280 ha dan meminta untuk dikeluarkan Surat Keputusan Redistribusi tanah tersebut, sedangkan SK Konsolidasi diputuskan dengan luas 25 ha. Kebijakan program redistribusi tanah adalah bagian dari reforma agraria dimana reforma agraria tidak hanya dipahami sebagai kebijakan untuk redistribusi tanah, yang disebut dengan asset reform, tetapi juga sebagai proses yang lebih luas seperti akses ke sumber dayaalam, keuangan/modal, teknologi, pasar, barang dan tenaga kerja, dan juga distribusi kekuatan politik atau disebut dengan acces reform.
PENALARAN HAKIM MENERAPKAN AJARAN PENYERTAAN DALAM PUTUSAN TINDAK PIDANA KORUPSI PADA BANK RIAU-KEPRI
Authors: Musa Muhammad 
Published: February 2018

Perbedaan penalaran hakim memutus perkara korupsi pemberian kredit yang terjadi di Bank Riau-Kepri,menjadi persoalan yuridis ketika menentukan kesalahan perbuatan turut serta para terdakwa. Permasalahan yang diteliti adalah tentang konstruksi pemikiran hakim menentukan unsur tindak pidana dan kesalahan para terdakwa. Urgensi penelitian ini untuk memahami pilihan prakis hakim menggunakan ajaran penyertaan, ketika menerapkan Pasal 55 KUHP dalam mengadili perbuatan turut serta. Pendekatan penelitian yang digunakani yuridis empiris dengan spesifikasi penelitian hukum normatif. Temuan penelitian, bahwa perbuatan pemberi kredit dari Bank Riau-Kepri terbukti bersalah dan dipidana. Penerima kredit diputus lepas dari segala tuntutan hukum. Konstruksi penalaran hakim, perbuatan penerima kredit tidak dapat dipertanggungjawabkan secara pidana karena perbuatan yang terbukti masuk dalam lingkup hukum perdata.
Modeling of Permeation and Fracturing Grouting in Sand: Laboratory Investigations
Authors: Cheng Wen-Chieh , Ni James C. , Shen Jack S. , Wang Zhi-Feng 
Published: February 2018

Abstract
One of the significant aspects of permeation grouting is the prevention of soil fracturing during construction. In this study, a newly designed laboratory apparatus including an overburden pressure modelling system, grouting chamber, grout injection control system, back-pressure monitoring system, and high-efficiency grout mixer is developed. A wet-raining method is adopted to prepare two 45-cm-diameter, 50-cm-high, poorly graded sandy soil specimens. A bleeding test is first conducted to select a cement-bentonite mixture with minimal bleeding. A series of both water injection tests and grout injection tests are carried out to investigate the threshold seepage velocity, the fracture initiation pressure, and the factors affecting the fracture initiation pressure, using a plot of injection pressure (p) against injection rate (q). In the water injection test series, tests are repeated at two effective overburden pressures, 49 kN/m2 and 98 kN/m2, and in the grout injection test series, tests are carried out at an effective overburden pressure of 98 kN/m2. The initial orientation of the fractures and their subsequent development are mapped and discussed. In the future, the fracture initiation pressure and the threshold seepage velocity can be evaluated by reference to the p-q curve suggested in this paper using a series of modelled p-q curves for different overburden pressures. Prior to field permeation grouting work, trial grouting is deemed necessary to verify the correctness of the obtained laboratory results, in order to prevent hydrofracturing of the soil.
Genomic-Enabled Prediction Kernel Models with Random Intercepts for Multi-environment Trials
Authors: Cuevas Jaime , Granato Italo , Fritsche-Neto Roberto , Montesinos-Lopez Osval A , Burgueño Juan , Bandeira e Sousa Massaine , Crossa José 
Published: February 2018

Abstract
In this study, we compared the prediction accuracy of the main genotypic effect model (MM) without G×E interactions, the multi-environment single variance G×E deviation model (MDs), and the multi-environment environment-specific variance G×E deviation model (MDe) where the random genetic effects of the lines are modeled with the markers (or pedigree). With the objective of further modeling the genetic residual of the lines, we incorporated the random intercepts of the lines (l) and generated another three models. Each of these 6 models were fitted with a linear kernel method (Genomic Best Linear Unbiased Predictor, GB) and a Gaussian Kernel (GK) method. We compared these 12 model-method combinations with another two multi-environment G×E interactions models with unstructured variance-covariances (MUC) using GB and GK kernels (4 model-method). Thus, we compared the genomic-enabled prediction accuracy of a total of 16 model-method combinations on two maize data sets with positive phenotypic correlations among environments, and on two wheat data sets with complex G×E that includes some negative and close to zero phenotypic correlations among environments. The two models (MDs and MDE with the random intercept of the lines and the GK method) were computationally efficient and gave high prediction accuracy in the two maize data sets. Regarding the more complex G×E wheat data sets, the prediction accuracy of the model-method combination with G×E, MDs and MDe, including the random intercepts of the lines with GK method had important savings in computing time as compared with the G×E interaction multi-environment models with unstructured variance-covariances but with lower genomic prediction accuracy.
Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection inCapsella
Authors: Bachmann Jörg A , Tedder Andrew , Laenen Benjamin , Steige Kim A , Slotte Tanja 
Published: February 2018

AbstractRapid advances in short-read DNA sequencing technologies have revolutionized population genomic studies, but there are genomic regions where this technology reaches its limits. Limitations mostly arise due to the difficulties in assembly or alignment to genomic regions of high sequence divergence and high repeat content, which are typical characteristics for loci under strong long-term balancing selection. Studying genetic diversity at such loci therefore remains challenging. Here, we investigate the feasibility and error rates associated with targeted long-read sequencing of a locus under balancing selection. For this purpose, we generated bacterial artificial chromosomes (BACs) containing the Brassicaceae S-locus, a region under strong negative frequency-dependent selection which has previously proven difficult to assemble in its entirety using short reads. We sequence S-locus BACs with single-molecule long-read sequencing technology and conduct de novo assembly of these S-locus haplotypes. By comparing repeated assemblies resulting from independent long-read sequencing runs on the same BAC clone we do not detect any structural errors, suggesting that reliable assemblies are generated, but we estimate an indel error rate of 5.7×10−5. A similar error rate was estimated based on comparison of Illumina short-read sequences and BAC assemblies. Our results show that, until de novo assembly of multiple individuals using long-read sequencing becomes feasible, targeted long-read sequencing of loci under balancing selection is a viable option with low error rates for single nucleotide polymorphisms or structural variation. We further find that short-read sequencing is a valuable complement, allowing correction of the relatively high rate of indel errors that result from this approach.
Guidelines for Adolescent Depression in Primary Care (GLAD-PC): Part II. Treatment and Ongoing Management
Authors: Cheung Amy H. , Zuckerbrot Rachel A. , Jensen Peter S. , Laraque Danielle , Stein Ruth E.K. ,   GLAD-PC STEERING GROUP, Levitt Anthony , Birmaher Boris , Campo John , Clarke Greg , Emslie Graham , Kaufman Miriam , Kelleher Kelly J. , Kutcher Stanley , Malus Michael , Sacks Diane , Waslick Bruce , Sarvet Barry 
Published: February 2018

OBJECTIVES:
To update clinical practice guidelines to assist primary care (PC) in the screening and assessment of depression. In this second part of the updated guidelines, we address treatment and ongoing management of adolescent depression in the PC setting.

METHODS:
By using a combination of evidence- and consensus-based methodologies, the guidelines were updated in 2 phases as informed by (1) current scientific evidence (published and unpublished) and (2) revision and iteration among the steering committee, including youth and families with lived experience.

RESULTS:
These updated guidelines are targeted for youth aged 10 to 21 years and offer recommendations for the management of adolescent depression in PC, including (1) active monitoring of mildly depressed youth, (2) treatment with evidence-based medication and psychotherapeutic approaches in cases of moderate and/or severe depression, (3) close monitoring of side effects, (4) consultation and comanagement of care with mental health specialists, (5) ongoing tracking of outcomes, and (6) specific steps to be taken in instances of partial or no improvement after an initial treatment has begun. The strength of each recommendation and the grade of its evidence base are summarized.

CONCLUSIONS:
The Guidelines for Adolescent Depression in Primary Care cannot replace clinical judgment, and they should not be the sole source of guidance for adolescent depression management. Nonetheless, the guidelines may assist PC clinicians in the management of depressed adolescents in an era of great clinical need and a shortage of mental health specialists. Additional research concerning the management of depressed youth in PC is needed, including the usability, feasibility, and sustainability of guidelines, and determination of the extent to which the guidelines actually improve outcomes of depressed youth.
“There are no recipes”
Authors: Farkas Judit 
Published: February 2018

Nutrition, as a fundamental human need as well as a manifestation of a social and cultural function, has always been the focus of ethnographic and anthropological research. Various concepts – sometimes radically different and at odds with each other – have emerged in modern societies to define food that can be considered safe. These include various nutritionrelated movements. Like all social movements, these movements also act as a signaling system: they emerge as a reaction to a societal problem, and the problems they reflect as well as the attempts to formulate solutions also indicate the social dilemmas of the era. Such is the thematization of ecological crisis in recent times.
The ecovillage is a specific type of settlement created in response to an ecological, economic and social crisis. The pursuit of an environmentally friendly way of life and self-sufficiency is also reflected in the food culture of ecovillagers, providing an interpretation of safe food deeply embedded in the ecological discourse. The study presents the considerations that govern the foodways of ecovillagers and how these manifest in practice (from farm to table), analyzing it in a framework of interpretation that places the ecovillages in a broader social context. First, the author briefly presents the ecovillages and the specific community being studied. Next, she sets forth the risk and crisis concept providing the framework of interpretation, and outlines the food movements that respond to it. Finally, she turns to the description and analysis of the specific ethnographic material, the modalities of preparing for an ecological crisis, the relationship and significance of biodiversity and gastrodiversity, and demonstrates the role attributed to the community as an institution in this process.
Типология жителей российского мегаполиса по отношению к иноэтничным мигрантам
Authors: Бритвина Ирина Борисовна , Могильчак Елена Львовна 
Published: February 2018

Ирина Борисовна Бритвина – доктор социологических наук, профессор, кафедра интегрированных маркетинговых коммуникаций и брендинга, Уральский федеральный университет им. первого Президента России Б.Н. Ельцина. Адрес: 620002, Екатеринбург, ул. Мира, д. 19. E-mail: irina.britvina@urfu.ru
Елена Львовна Могильчак – кандидат философских наук, доцент, Уральский федеральный университет им. первого Президента России Б.Н. Ельцина. Адрес: 620002, Екатеринбург, ул. Мира, д. 19. E-mail: e.l.mogilchak@urfu.ru
Цитирование: Бритвина И.Б., Могильчак Е.Л. (2018) Типология жителей российского мегаполиса по отношению к иноэтничным мигрантам // Мир России. Т. 27. № 1. С. 114–134. DOI: 10.17323/1811-038X-2018-27-1-114-134

В данной статье исследуется отношение к иноэтничным мигрантам, понимаемое как фактор аккультурации приезжих с учетом диспозиционной неоднородности принимающего сообщества. Эмпирической базой для анализа являлись результаты исследования жителей г. Екатеринбурга в возрасте 15 лет и старше. Проведен сравнительный анализ четырех типологических групп горожан с различными установками относительно мигрантов из Центральной Азии («непримиримые», «действенные благожелатели», «противоречивые» и «равнодушные»). Результаты получены с использованием кластерного анализа. В качестве классификационных признаков выступили 12 переменных, являющихся прямыми индикаторами отношения к мигрантам. Особенности каждой типологической группы описаны с использованием индикаторов, которые отражают отношение к миграции как социальному процессу. Измерялись и диспозиции относительно мигрантов в их индивидуальном проявлении, включая приемлемость брачных отношений и личной дружбы с мигрантами. Выявлены два кластера, наиболее различающиеся по всему комплексу показателей. Основу различий между данными группами составляют ценностные особенности, которые косвенно проявляются в наличии или отсутствии неприязни к некоторым этносам.Авторы приходят к выводу о существовании специфических причин формирования отношения к мигрантам в разных кластерах. Результаты опроса показали, что в центре формирования положительного или отрицательного отношения к приезжим в конкретном кластере может стоять широкое разнообразие социальных контактов с мигрантами, концентрация внимания на собственной этнической принадлежности, осознание угрозы реализации личных экономических интересов, этническая индифферентность.