bluuebunny/crossref_metadata_2025_split huggingface dataset:
Nomogram for prediction of non-proliferative diabetic retinopathy in juvenile-onset type 1 diabetes: a cohort study in an Asian population
Authors: Kang Eugene Yu-Chuan , Lo Fu-Sung , Wang Jung-Pan , Yeh Lung-Kun , Wu An-Lun , Tseng Yun-Ju , Yeh Chun-Ting , Liu Laura , Chen Kuan-Jen , Wu Wei-Chi , Lai Chi-Chun , Wang Nan-Kai ,   Chang Gung Juvenile Diabetes Eye Study Group, Chen Tun-Lu , Chao An-Ning , Hwang Yih-Shiou , Chen Yen-Po , Chen Yih-Hsin 
Published: August 2018

AbstractThe need for screening for retinopathy in patients with type 1 diabetes mellitus (T1DM) has been emphasised, but diagnostic delays were reported when screening was done at fixed intervals. To establish an individualised risk-prediction model to assist screening non-proliferative diabetic retinopathy (NPDR) in T1DM, we performed a retrospective cohort study enrolling participants in the Chang Gung Juvenile Diabetes Eye Study. There were 413 patients with 12 381 records analysed from 2005 to 2015. A time-dependent Cox proportional hazard analysis was used to evaluate the risks of NPDR development and a nomogram with risk-stratification indicators was established based on the results. During 97 months of follow-up, 43 of 413 patients (10.4%) developed NPDR. Male sex (HR: 0.4, 95% CI: 0.19–0.85), age 5–14 years at onset of T1DM (6.38, 2.41–16.87), duration of diabetes (1.57, 1.41–1.75), and hemoglobin A1c level (1.56, 1.35–1.80) were independently associated with NPDR. Using the nomogram offers a quick method in the clinical setting to interpret the risk of NPDR development. Based on its weighting, each of the independent factors is allocated a score, and the total points indicate the probabilities of NPDR occurring within 6 months, 1 year, and 3 years.
Three-stage processing of category and variation information by entangled interactive mechanisms of peri-occipital and peri-frontal cortices
Authors: Karimi-Rouzbahani Hamid 
Published: August 2018

AbstractObject recognition has been a central question in human vision research. The general consensus is that the ventral and dorsal visual streams are the major processing pathways undertaking objects’ category and variation processing. This overlooks mounting evidence supporting the role of peri-frontal areas in category processing. Yet, many aspects of visual processing in peri-frontal areas have remained unattended including whether these areas play role only during active recognition and whether they interact with lower visual areas or process information independently. To address these questions, subjects were presented with a set of variation-controlled object images while their EEG were recorded. Considerable amounts of category and variation information were decodable from occipital, parietal, temporal and prefrontal electrodes. Using information-selectivity indices, phase and Granger causality analyses, three processing stages were identified showing distinct directions of information transaction between peri-frontal and peri-occipital areas suggesting their parallel yet interactive role in visual processing. A brain-plausible model supported the possibility of interactive mechanisms in peri-occipital and peri-frontal areas. These findings, while promoting the role of prefrontal areas in object recognition, extend their contributions from active recognition, in which peri-frontal to peri-occipital pathways are activated by higher cognitive processes, to the general sensory-driven object and variation processing.
Aristolochic acid I determine the phenotype and activation of macrophages in acute and chronic kidney disease
Authors: Honarpisheh Mohsen , Foresto-Neto Orestes , Steiger Stefanie , Kraft Franziska , Koehler Paulina , von Rauchhaupt Ekaterina , Potempa Jan , Adamowicz Karina , Koziel Joanna , Lech Maciej 
Published: August 2018

AbstractAcute and chronic kidney injuries are multifactorial traits that involve various risk factors. Experimental animal models are crucial to unravel important aspects of injury and its pathophysiological mechanisms. Translating knowledge obtained from experimental approaches into clinically useful information is difficult; therefore, significant attention needs to be paid to experimental procedures that mimic human disease. Herein, we compared aristolochic acid I (AAI) acute and chronic kidney injury model with unilateral ischemic-reperfusion injury (uIRI), cisplatin (CP)- or folic acid (FA)-induced renal damage. The administration of AAI showed significant changes in serum creatinine and BUN upon CKD. The number of neutrophils and macrophages were highly increased as well as AAI-induced CKD characterized by loss of tubular epithelial cells and fibrosis. The in vitro and in vivo data indicated that macrophages play an important role in the pathogenesis of AA-induced nephropathy (AAN) associated with an excessive macrophage accumulation and an alternative activated macrophage phenotype. Taken together, we conclude that AA-induced injury represents a suitable and relatively easy model to induce acute and chronic kidney injury. Moreover, our data indicate that this model is appropriate and superior to study detailed questions associated with renal macrophage phenotypes.
Flt3 ligand treatment reduces enterovirus A71 lethality in mice with enhanced B cell responses
Authors: Lin Yu-Wen , Wang Li-Chiu , Lee Chien-Kuo , Chen Shun-Hua 
Published: August 2018

AbstractEnterovirus A71 (EV-A71) infection can induce encephalitis, which causes death or long-term neurological sequelae, especially in young children. Using a murine infection model, we searched for anti-EV-A71 agents, because effective therapies are not available to control fatal infection. In EV-A71-infected mice, treatment with the hematopoietic growth factor, Fms-like tyrosine-kinase 3 ligand (Flt3 ligand) before infection reduced the lethality and tissue viral loads. Flt3 ligand failed to enhance the production of type I interferons. Instead, Flt3 ligand boosted the numbers of dendritic cells and, particularly lymphocytes in infected organs with an expansion of spleen B cells, and resulted in an increased titer of virus-specific antibody with neutralizing activity in the serum. The protective effect of Flt3 ligand was abolished in B cell-deficient mice. Our findings revealed that Flt3 ligand administration promotes resistance to EV-A71 infection with enhanced B cell response in a mechanism rarely reported before.
Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014–2016 outbreak in Colombia
Authors: España Guido , Grefenstette John , Perkins Alex , Torres Claudia , Campo Carey Alfonso , Diaz Hernando , de la Hoz Fernando , Burke Donald S. , van Panhuis Willem G. 
Published: August 2018

AbstractNew epidemics of infectious diseases can emerge any time, as illustrated by the emergence of chikungunya virus (CHIKV) and Zika virus (ZIKV) in Latin America. During new epidemics, public health officials face difficult decisions regarding spatial targeting of interventions to optimally allocate limited resources. We used a large-scale, data-driven, agent-based simulation model (ABM) to explore CHIKV mitigation strategies, including strategies based on previous DENV outbreaks. Our model represents CHIKV transmission in a realistic population of Colombia with 45 million individuals in 10.6 million households, schools, and workplaces. Our model uses high-resolution probability maps for the occurrence of the Ae. aegypti mosquito vector to estimate mosquito density in Colombia. We found that vector control in all 521 municipalities with mosquito populations led to 402,940 fewer clinical cases of CHIKV compared to a baseline scenario without intervention. We also explored using data about previous dengue virus (DENV) epidemics to inform CHIKV mitigation strategies. Compared to the baseline scenario, 314,437 fewer cases occurred when we simulated vector control only in 301 municipalities that had previously reported DENV, illustrating the value of available data from previous outbreaks. When varying the implementation parameters for vector control, we found that faster implementation and scale-up of vector control led to the greatest proportionate reduction in cases. Using available data for epidemic simulations can strengthen decision making against new epidemic threats.
Apoptosis regulation by subcellular relocation of caspases
Authors: Prokhorova Evgeniia A. , Kopeina Gelina S. , Lavrik Inna N. , Zhivotovsky Boris 
Published: August 2018

AbstractThe cleavage of nuclear proteins by caspases promotes nuclear breakdown and, therefore, plays a key role in apoptosis execution. However, the detailed molecular mechanisms of these events remain unclear. To get more insights into the mechanisms of nuclear events during apoptosis we set up a rapid fractionation protocol for the separation of the cytoplasmic and nuclear fractions of cells undergoing cisplatin-induced apoptosis. Importantly, nuclear accumulation of effector caspase-3 as well as initiator caspase-2, -8 and -9 was observed using the developed protocol and immunofluorescence microscopy. The detection of caspases and their cleavage products in the nucleus occurred within the same time interval after cisplatin treatment and took place shortly before nuclear fragmentation. The entry of initiator caspases to the nucleus was independent of caspase-3. Given that all three initiator caspases had catalytic activity in the nuclei, our findings indicate that initiator caspases might participate in the proteolysis of nuclear components during apoptosis, promoting its disintegration and apoptotic cell death.
Cracking pattern of tissue slices induced by external extension provides useful diagnostic information
Authors: Danno Keisuke , Nakamura Takuto , Okoso Natsumi , Nakamura Naohiko , Iguchi Kohta , Iwadate Yoshiaki , Kenmotsu Takahiro , Ikegawa Masaya , Uemoto Shinji , Yoshikawa Kenichi 
Published: August 2018

AbstractAlthough biopsy is one of the most important methods for diagnosis in diseases, there is ambiguity based on the information obtained from the visual inspection of tissue slices. Here, we studied the effect of external extension on tissue slices from mouse liver with different stages of disease: Healthy normal state, Simple steatosis, Non-alcoholic steatohepatitis and Hepatocellular carcinoma. We found that the cracking pattern of a tissue slice caused by extension can provide useful information for distinguishing among the disease states. Interestingly, slices with Hepatocellular carcinoma showed a fine roughening on the cracking pattern with a characteristic length of the size of cells, which is much different than the cracking pattern for slices with non-cancerous steatosis, for which the cracks were relatively straight. The significant difference in the cracking pattern depending on the disease state is attributable to a difference in the strength of cell-cell adhesion, which would be very weak under carcinosis. As it is well known that the manner of cell-cell adhesion neatly concerns with the symptoms in many diseases, it may be promising to apply the proposed methodology to the diagnosis of other diseases.
Detecting the Causal Effect of Soil Moisture on Precipitation Using Convergent Cross Mapping
Authors: Wang Yunqian , Yang Jing , Chen Yaning , De Maeyer Philippe , Li Zhi , Duan Weili 
Published: August 2018

AbstractAs a vital land surface parameter, soil moisture influences climate through its impact on water and energy cycles. However, the effect of soil moisture on precipitation has been strongly debated. In this study, a new causal detection method, convergent cross mapping (CCM), was applied to explore the causality between soil moisture and precipitation over low- and mid- latitude regions in the Northern Hemisphere. CCM method generally identified a strong effect of soil moisture on precipitation. Specifically, the optimal effect of soil moisture on precipitation occurred with a lag of one month and clearly decreased after four months, suggesting that soil moisture has potentials to improve the accuracy of precipitation forecast at a sub-seasonal scale. In addition, as climate (i.e., aridity index) changed from dry to wet, the effect of soil moisture on precipitation first increased and then decreased with peaks in semi-arid and semi-humid areas. These findings statistically support the hypothesis that soil moisture impacts precipitation and also provide a reference for the design of climate prediction systems.
Young species of cupuladriid bryozoans occupied new Caribbean habitats faster than old species
Authors: O’Dea Aaron , De Gracia Brigida , Figuerola Blanca , Jagadeeshan Santosh 
Published: August 2018

AbstractThe breadth of habitat occupied by a species, and the rate at which a species can expand into new habitats has important ecological and evolutionary consequences. Here we explore when extant species of free-living cupuladriid bryozoans expanded into new benthic Caribbean habitats that emerged during the final stages of formation of the Isthmus of Panama. Habitat breadth was estimated using the abundances of over 90,000 colonies in ten cupuladriid species, along with the ecological and sedimentary characteristics of the samples in which they occurred. Data reveal that all species expanded their habitat breadths during the last 6 Myr, but did so at a different tempo. ‘Young’ species - those that originated after 5 Ma - expanded relatively quickly, whereas ‘old’ species - those that originated before 9 Ma - took a further 2 Myr to achieve a comparable level of expansion. We propose that, like invasive species, young species are less restrained when expanding their habitat breadths compared to older well-established species. Understanding the mechanism causing this restraint requires further research.
On the coordination of highly dynamic human movements: an extension of the Uncontrolled Manifold approach applied to precision jump in parkour
Authors: Maldonado Galo , Bailly François , Souères Philippe , Watier Bruno 
Published: August 2018

AbstractThe human body generally has more degrees of freedom than necessary for generating a given movement. According to the motor abundance principle, this redundancy is beneficial as it provides the central nervous system with flexibility and robustness for the generation of movements. Under the hypothesis of the Uncontrolled Manifold, the additional degrees of freedom are used to produce motor solutions by reducing the variability that affects the motion performance across repetitions. In this paper, we present a general mathematical framework derived from robotics to formulate kinematic and dynamic tasks in human movement. On this basis, an extension of the Uncontrolled Manifold approach is introduced to deal with dynamic movements. This extension allows us to present a complex experimental application of the proposed framework to highly dynamic task variables in parkour movements. This experiment involves dynamic tasks expressed in terms of linear and angular momenta. The results show that the central nervous system is able to coordinate such skilled tasks which appear to be preferentially controlled and hierarchically organized. The proposed extension is promising for the study of motion generation in anthropomorphic systems and provides a formal description to investigate kinematics and dynamics tasks in human motions.
Resistive switching in nano-structures
Authors: Karpov V. G. , Niraula D. 
Published: August 2018

AbstractSolid state memory and switching devices aimed at replacing the flash memory technology operate by switching from the high to low resistance when conductive filaments are created in response to the electric pulse. The filaments are identified with either structurally different protrusions or purely electronic conductive pathways. The former can appear via the field induced nucleation (FIN), while the latter do not require phase transformations and are attributed to certain types of temperature and bias dependent conductivity. The existing understanding of those processes ignores features related to extremely small linear sizes of nano-structures. Such are, for example, the device sizes smaller than critical nucleation radii, and/or the electron energy relaxation lengths exceeding the structure dimensions. This paper develops a theory of switching under nano-size conditions. We show how the structure thinness can make FIN a truly threshold phenomenon possible only for voltage (not the field) exceeding a certain critical value. We predict the possibility of threshold switching without memory for certain thickness dependent voltages. The thermal runaway mechanism of electronic switching is described analytically leading to results consistent with the published numerical modeling. Our predictions offer possible experimental verifications deciding between FIN and thermal runaway switching.
Plasma Homoarginine Concentrations According to Use of Hormonal Contraception
Authors: Helm Thea , Varsi Kristin , Fløtre Christina Herland , Lund Agnethe , Svingen Gard Frodahl Tveitevåg , Ueland Per Magne , Bjørke-Monsen Anne-Lise 
Published: August 2018

AbstractEstrogen is a potent vasodilator through activation of endothelial nitric oxide synthase (eNOS). Arginine and its homologue homoarginine are substrates for NOS, while asymmetric dimethylarginine (ADMA) is a NOS inhibitor. Healthy, never-pregnant women aged 18 to 40 years (n = 158) were categorized according to use of hormonal contraception into non-users (n = 76), users of estrogen contraceptives (EC-users, n = 58) and users of progestins-only contraceptives (PC-users, n = 24). Plasma homoarginine, arginine, ADMA and SDMA concentrations were assayed using a LC-MS/MS method. Compared to non-users, EC users had higher plasma homoarginine (median (interquartile range) 1.63 (1.24, 2.04) vs. 2.39 (2.05, 2.85) µmol/L, p < 0.001), lower arginine (80.8 (72.4, 94.3) vs. 72.1 (62.9, 85.1) µmol/L, p = 0.008) and ADMA (0.52 (0.46, 0.59) vs. 0.48 (0.42, 0.54) µmol/L, p = 0.003) concentrations. The lowest median plasma homoarginine concentration (1.34 (0.92, 1.75) µmol) was seen in PC-users. No differences were seen in SDMA concentrations according to use of hormonal contraception. In healthy, never-pregnant women aged 18 to 40 years, use of estrogen containing contraception was associated with significantly higher plasma concentrations of homoarginine and lower plasma concentrations of arginine and ADMA as compared to non-users, while the lowest plasma homoarginine concentrations were seen in progestin-only users. Whether the observed changes in relation to use of hormonal contraception have an impact on cardiovascular status, should be evaluated in an intervention study.
Multiplex mutagenesis of four clustered CrRLK1L with CRISPR/Cas9 exposes their growth regulatory roles in response to metal ions
Authors: Richter Julia , Watson James Matthew , Stasnik Peter , Borowska Monika , Neuhold Jana , Berger Matthias , Stolt-Bergner Peggy , Schoft Vera , Hauser Marie-Theres 
Published: August 2018

AbstractResolving functions of closely linked genes is challenging or nearly impossible with classical genetic tools. Four members of the Catharanthus roseus receptor-like kinase 1-like (CrRLK1L) family are clustered on Arabidopsis chromosome five. To resolve the potentially redundant functions of this subclass of CrRLK1Ls named MEDOS1 to 4 (MDS1 to 4), we generated a single CRISPR/Cas9 transformation vector using a Golden Gate based cloning system to target all four genes simultaneously. We introduce single mutations within and deletions between MDS genes as well as knock-outs of the whole 11 kb gene cluster. The large MDS cluster deletion was inherited in up to 25% of plants lacking the CRISPR/Cas9 construct in the T2 generation. In contrast to described phenotypes of already characterized CrRLK1L mutants, quadruple mds knock-outs were fully fertile, developed normal root hairs and trichomes and responded to pharmacological inhibition of cellulose biosynthesis similar to wildtype. Recently, we demonstrated the role of four CrRLK1L in growth adaptation to metal ion stress. Here we show the involvement of MDS genes in response to Ni2+ during hypocotyl elongation and to Cd2+ and Zn2+ during root growth. Our finding supports the model of an organ specific network of positively and negatively acting CrRLK1Ls.
Unraveling the Plasmodium vivax sporozoite transcriptional journey from mosquito vector to human host
Authors: Roth Alison , Adapa Swamy R. , Zhang Min , Liao Xiangyun , Saxena Vishal , Goffe Raaven , Li Suzanne , Ubalee Ratawan , Saggu Gagandeep S. , Pala Zarna R. , Garg Shilpi , Davidson Silas , Jiang Rays H. Y. , Adams John H. 
Published: August 2018

AbstractMalaria parasites transmitted by mosquito bite are remarkably efficient in establishing human infections. The infection process requires roughly 30 minutes and is highly complex as quiescent sporozoites injected with mosquito saliva must be rapidly activated in the skin, migrate through the body, and infect the liver. This process is poorly understood for Plasmodium vivax due to low infectivity in the in vitro models. To study this skin-to-liver-stage of malaria, we used quantitative bioassays coupled with transcriptomics to evaluate parasite changes linked with mammalian microenvironmental factors. Our in vitro phenotyping and RNA-seq analyses revealed key microenvironmental relationships with distinct biological functions. Most notable, preservation of sporozoite quiescence by exposure to insect-like factors coupled with strategic activation limits untimely activation of invasion-associated genes to dramatically increase hepatocyte invasion rates. We also report the first transcriptomic analysis of the P. vivax sporozoite interaction in salivary glands identifying 118 infection-related differentially-regulated Anopheles dirus genes. These results provide important new insights in malaria parasite biology and identify priority targets for antimalarial therapeutic interventions to block P. vivax infection.
Thermal spin fluctuations in CoCrFeMnNi high entropy alloy
Authors: Dong Zhihua , Schönecker Stephan , Li Wei , Chen Dengfu , Vitos Levente 
Published: August 2018

AbstractHigh entropy alloys based on 3d transition metals display rich and promising magnetic characteristics for various high-technology applications. Understanding their behavior at finite temperature is, however, limited by the incomplete experimental data for single-phase alloys. Here we use first-principles alloy theory to investigate the magnetic structure of polymorphic CoCrFeMnNi in the paramagnetic state by accounting for the longitudinal spin fluctuations (LSFs) as a function of temperature. In both face-centered cubic (fcc) and hexagonal close-packed (hcp) structures, the LSFs induce sizable magnetic moments for Co, Cr and Ni. The impact of LSFs is demonstrated on the phase stability, stacking fault energy and the fcc-hcp interfacial energy. The hcp phase is energetically preferable to the fcc one at cryogenic temperatures, which results in negative stacking fault energy at these conditions. With increasing temperature, the stacking fault energy increases, suppressing the formation of stacking faults and nano-twins. Our predictions are consistent with recent experimental findings.