bluuebunny/crossref_metadata_2025_split huggingface dataset:
Topological edge states in high-temperature superconductiving FeSe/SrTiO3 films with Te substitution
Authors: Chen Li , Liu Hongmei , Jiang Chuan , Shi Changmin , Wang Dongchao , Cui Guangliang , Li Xiaolong , Zhuang Qiandong 
Published: March 2019

AbstractUsing first principles theory, we investigated the behavior of the one-dimensional (1D) topological edge states of high temperature superconductiviing FeSe/SrTiO3 films with Te atoms substitution to Se atoms in the bottom (top) layer in single-layer FeSe, as a function of strain. It was discovered that the 1D topological edge states are present in single-unit-cell FeSe film on SrTiO3, but are absent when more than 50% Se atoms are replaced by Te atoms. Stress induced displacive phase transformation exists in FeSe/SrTiO3 film when Te atoms substitute Se atoms in the bottom (top) layer in single-layer FeSe under 3% strain respectively. The 1D topological edge states are present under 3% (1.8%) strain in FeSe/SrTiO3 films with Te substitution Se in the bottom (top) layer in single-layer FeSe, even up to 5%, respectively. This indicates that the bonding angle of Se-Fe-Se (Te) and the distance of Te (or Se) atoms to the Fe plane are correlated with the topological edge states. Our findings provide an effective interface system that provides both superconducting and topological states, opening a new route for realizing 2D topological superconductors with proximity effect.
Diffusion-based tractography atlas of the human acoustic radiation
Authors: Maffei Chiara , Sarubbo Silvio , Jovicich Jorge 
Published: March 2019

AbstractDiffusion MRI tractography allows in-vivo characterization of white matter architecture, including the localization and description of brain fibre bundles. However, some primary bundles are still only partially reconstructed, or not reconstructed at all. The acoustic radiation (AR) represents a primary sensory pathway that has been largely omitted in many tractography studies because its location and anatomical features make it challenging to reconstruct. In this study, we investigated the effects of acquisition and tractography parameters on the AR reconstruction using publicly available Human Connectome Project data. The aims of this study are: (i) using a subgroup of subjects and a reference AR for each subject, define an optimum set of parameters for AR reconstruction, and (ii) use the optimum parameters set on the full group to build a tractography-based atlas of the AR. Starting from the same data, the use of different acquisition and tractography parameters lead to very different AR reconstructions. Optimal results in terms of topographical accuracy and correspondence to the reference were obtained for probabilistic tractography, high b-values and default tractography parameters: these parameters were used to build an AR probabilistic tractography atlas. A significant left-hemispheric lateralization was found in the AR reconstruction of the 34 subjects.
Flavobacterium petrolei sp. nov., a novel psychrophilic, diesel-degrading bacterium isolated from oil-contaminated Arctic soil
Authors: Chaudhary Dhiraj Kumar , Kim Dong-Uk , Kim Dockyu , Kim Jaisoo 
Published: March 2019

AbstractThis study presents taxonomic description of two novel diesel-degrading, psychrophilic strains: Kopri-42T and Kopri-43, isolated during screening of oil-degrading psychrotrophs from oil-contaminated Arctic soil. A preliminary 16S rRNA gene sequence and phylogenetic tree analysis indicated that these Arctic strains belonged to the genus Flavobacterium, with the nearest relative being Flavobacterium psychrolimnae LMG 22018T (98.9% sequence similarity). The pairwise 16S rRNA gene sequence identity between strains Kopri-42T and Kopri-43 was 99.7%. The DNA-DNA hybridization value between strain Kopri-42T and Kopri-43 was 88.6 ± 2.1% indicating that Kopri-42T and Kopri-43 represents two strains of the same genomospecies. The average nucleotide identity and in silico DNA-DNA hybridization values between strain Kopri-42T and nearest relative F. psychrolimnae LMG 22018T were 92.4% and 47.9%, respectively. These values support the authenticity of the novel species and confirmed the strain Kopri-42T belonged to the genus Flavobacterium as a new member. The morphological, physiological, biochemical and chemotaxonomic data also distinguished strain Kopri-42T from its closest phylogenetic neighbors. Based on the polyphasic data, strains Kopri-42T and Kopri-43 represents a single novel species of the genus Flavobacterium, for which the name Flavobacterium petrolei sp. nov. is proposed. The type strain is Kopri-42T (=KEMB 9005-710T = KACC 19625T = NBRC 113374T).
Confidence Predictions Affect Performance Confidence and Neural Preparation in Perceptual Decision Making
Authors: Boldt Annika , Schiffer Anne-Marike , Waszak Florian , Yeung Nick 
Published: March 2019

AbstractDecisions are usually accompanied by a feeling of being wrong or right – a subjective confidence estimate. But what information is this confidence estimate based on, and what is confidence used for? To answer these questions, research has largely focused on confidence regarding current or past decisions, for example identifying how characteristics of the stimulus affect confidence, how confidence can be used as an internally generated feedback signal, and how communicating confidence can affect group decisions. Here, we report two studies which implemented a novel metacognitive measure: predictions of confidence for future perceptual decisions. Using computational modeling of behaviour and EEG, we established that experience-based confidence predictions are one source of information that affects how confident we are in future decision-making, and that learned confidence-expectations affect neural preparation for future decisions. Results from both studies show that participants develop precise confidence predictions informed by past confidence experience. Notably, our results also show that confidence predictions affect performance confidence rated after a decision is made; this finding supports the proposal that confidence judgments are based on multiple sources of information, including expectations. We found strong support for this link in neural correlates of stimulus preparation and processing. EEG measures of preparatory neural activity (contingent negative variation; CNV) and evidence accumulation (centro-parietal positivity; CPP) show that predicted confidence affects neural preparation for stimulus processing, supporting the proposal that one purpose of confidence judgments may be to learn about performance for future encounters and prepare accordingly.
Observation of magnetic skyrmions in unpatterned symmetric multilayers at room temperature and zero magnetic field
Authors: Brandão J. , Dugato D. A. , Seeger R. L. , Denardin J. C. , Mori T. J. A. , Cezar J. C. 
Published: March 2019

AbstractMagnetic skyrmions are promising candidates for the next generation of spintronic devices due to their small size and topologically protected structure. One challenge for using these magnetic states in applications lies on controlling the nucleation process and stabilization that usually requires an external force. Here, we report on the evidence of skyrmions in unpatterned symmetric Pd/Co/Pd multilayers at room temperature without prior application of neither electric current nor magnetic field. Decreasing the ferromagnetic interlayer thickness, the tuning of the physical properties across the ferromagnetic/non-magnetic interface gives rise to a transition from worm like domains patterns to isolated skyrmions as demonstrated by magnetic force microscopy. On the direct comparison of the measured and simulated skyrmions size, the interfacial Dzyaloshinskii-Moriya interaction (iDMI) was estimated, reveling that isolated skyrmions are just stabilized at zero magnetic field taking into account non-null values of iDMI. Our findings provide new insights towards the use of stabilized skyrmions for room temperature devices in nominally symmetric multilayers.
Coordination-induced emission enhancement in gold-nanoclusters with solid-state quantum yields up to 40% for eco-friendly, low-reabsorption nano-phosphors
Authors: Huang Hsiu-Ying , Cai Kun-Bin , Talite Maria Jessabel , Chou Wu-Ching , Chen Po-Wen , Yuan Chi-Tsu 
Published: March 2019

AbstractColloidal quantum dots (CQDs) have gained much attention as light-emitting materials for light-conversion nano-phosphors and luminescent solar concentrators. Unfortunately, those CQDs involve toxic heavy metals and frequently need to be synthesized in the hazardous organic solvent. In addition, they suffer from severe solid-state aggregation-induced self-quenching and reabsorption losses. To address these issues, here we prepare Zn-coordinated glutathione-stabilized gold-nanocluster (Zn-GSH-AuNCs) assemblies without involving heavy metals and organic solvent. Unlike GSH-AuNCs dispersed in an aqueous solution with poor photoluminescence quantum yields (PL-QYs, typically ~1%), those Zn-GSH-AuNCs powders hold high solid-state PL-QYs up to 40 ± 5% in the aggregated state. Such Zn-induced coordination-enhanced emission (CEE) is attributed to the combined effects of suppressed non-radiative relaxation and enhanced charge-transfer interaction. In addition, they also exhibit a large Stokes shift, thus mitigating both aggregation-induced self-quenching and reabsorption losses. Motivated by these photophysical properties, we demonstrated white-light emission from all non-toxic, aqueous-synthesis nano-materials.
Cognitive impairment in an animal model of multiple sclerosis and its amelioration by glatiramer acetate
Authors: Aharoni Rina , Schottlender Nofar , Bar-Lev Dekel D. , Eilam Raya , Sela Michael , Tsoory Michael , Arnon Ruth 
Published: March 2019

AbstractThe severe motor impairment in the MS animal model experimental autoimmune encephalomyelitis (EAE) obstructs the assessment of cognitive functions. We developed an experimental system that evaluates memory faculties in EAE-affected mice, irrespective of their motor performance, enabling the assessment of cognitive impairments along the disease duration, the associated brain damage, and the consequences of glatiramer acetate (GA) treatment on these manifestations. The delayed-non-matching to sample (DNMS) T-maze task, testing working and long term memory was adapted and utilized. Following the appearance of clinical manifestations task performances of the EAE-untreated mice drastically declined. Cognitive impairments were associated with disease severity, as indicated by a significant correlation between the T-maze performance and the clinical symptoms in EAE-untreated mice. GA-treatment conserved cognitive functions, so that despite their exhibited mild motor impairments, the treated mice performed similarly to naïve controls. The cognitive deficit of EAE-mice coincided with inflammatory and neurodegenerative damage to the frontal cortex and the hippocampus; these damages were alleviated by GA-treatment. These combined findings indicate that in addition to motor impairment, EAE leads to substantial impairment of cognitive functions, starting at the early stages and increasing with disease aggravation. GA-treatment, conserves cognitive capacities and prevents its disease related deterioration.
A mathematical model to estimate the seasonal change in apparent longevity of bee colony
Authors: Yamada Yasuhiro , Yamada Toshiro , Yamada Kazuko 
Published: March 2019

AbstractThe longevity of a honeybee colony is far more significant than the lifespan of an individual honeybee, a social insect. The longevity of a honeybee colony is integral to the fate of the colony. We have proposed a new mathematical model to estimate the apparent longevity defined in the upper limit of an integral equation. The apparent longevity can be determined only from the numbers of adult bees and capped brood. By applying the mathematical model to a honeybee colony in Japan, seasonal changes in apparent longevity were estimated in three long-term field experiments. Three apparent longevities showed very similar season-changes to one another, increasing from early autumn, reaching a maximum at the end of overwintering and falling approximately plumb down after overwintering. The influence of measurement errors in the numbers of adult bees and capped brood on the apparent longevity was investigated.
Specific elastin degradation products are associated with poor outcome in the ECLIPSE COPD cohort
Authors: Rønnow Sarah Rank , Langholm Lasse Løcke , Sand Jannie Marie Bülow , Thorlacius-Ussing Jeppe , Leeming Diana Julie , Manon-Jensen Tina , Tal-Singer Ruth , Miller Bruce E. , Karsdal Morten Asser , Vestbo Jørgen 
Published: March 2019

AbstractChronic obstructive pulmonary disease (COPD) is characterized by a slow heterogeneous progression. Therefore, improved biomarkers that can accurately identify patients with the highest likelihood of progression and therefore the ability to benefit from a given treatment, are needed. Elastin is an essential structural protein of the lungs. In this study, we investigated whether elastin degradation products generated by the enzymes proteinase 3, cathepsin G, neutrophil elastase, MMP7 or MMP9/12 were prognostic biomarkers for COPD-related outcomes. The elastin degradome was assessed in a subpopulation (n = 1307) of the Evaluation of COPD Longitudinally to Identify Predictive Surrogate End-points (ECLIPSE) cohort with 3 years of clinical follow-up. Elastin degraded by proteinase 3 could distinguish between COPD participants and non-smoking controls (p = 0.0006). A total of 30 participants (3%) died over the 3 years of observation. After adjusting for confounders, plasma levels of elastin degraded by proteinase 3 and cathepsin G were independently associated with mortality outcome with a hazard ratio per 1 SD of 1.49 (95%CI 1.24–1.80, p < 0.0001) and 1.31 (95%CI 1.10–1.57, p = 0.0029), respectively. Assessing the elastin degradome demonstrated that specific elastin degradation fragments have potential utility as biomarkers identifying subtypes of COPD patients at risk of poor prognosis and supports further exploration in confirmatory studies.
Improving the performance of computational ghost imaging by using a quadrant detector and digital micro-scanning
Authors: Sun Ming-Jie , Wang Hao-Yu , Huang Ji-Yu 
Published: March 2019

AbstractComputational ghost imaging systems reconstruct images using a single element detector, which measures the level of correlation between the scene and a set of projected patterns. The sequential nature of these measurements means that increasing the system frame-rate reduces the signal-to-noise ratio (SNR) of the captured images. Furthermore, a higher spatial resolution requires the projection of more patterns, and so both frame-rate and SNR suffer from the increase of the spatial resolution. In this work, we combat these limitations by developing a hybrid few-pixel imaging system that combines structured illumination with a quadrant photodiode detector. To further boost the SNR of our system, we employ digital micro-scanning of the projected patterns. Experimental results show that our proposed imaging system is capable of reconstructing images 4 times faster and with ~33% higher SNR than a conventional single-element computational ghost imaging system utilizing orthogonal Hadamard pattern projection. Our work demonstrates a computational imaging system in which there is a flexible trade-off between frame-rate, SNR and spatial resolution, and this trade-off can be optimized to match the requirements of different applications.
Preparation of kenaf stem hemicellulosic hydrolysate and its fermentability in microbial production of xylitol by Escherichia coli BL21
Authors: Shah Siti Syazwani Mohd , Luthfi Abdullah Amru Indera , Low Kheng Oon , Harun Shuhaida , Manaf Shareena Fairuz Abdul , Illias Rosli Md. , Jahim Jamaliah Md. 
Published: March 2019

AbstractKenaf (Hibiscus cannabinus L.), a potential fibre crop with a desirably high growth rate, could serve as a sustainable feedstock in the production of xylitol. In this work, the extraction of soluble products of kenaf through dilute nitric-acid hydrolysis was elucidated with respect to three parameters, namely temperature, residence time, and acid concentration. The study will assist in evaluating the performance in terms of xylose recovery. The result point out that the maximum xylose yield of 30.7 g per 100 g of dry kenaf was attained from 2% (v/v) HNO3at 130 °C for 60 min. The detoxified hydrolysate was incorporated as the primary carbon source for subsequent fermentation by recombinantEscherichia coliand the performance of strain on five different semi-synthetic media on xylitol production were evaluated herein. Among these media, batch cultivation in a basal salt medium (BSM) afforded the highest xylitol yield of 0.35 g/g based on xylose consumption, which corresponded to 92.8% substrate utilization after 38 h. Subsequently, fermentation byE.coliin the xylose-based kenaf hydrolysate supplemented with BSM resulting in 6.8 g/L xylitol which corresponding to xylitol yield of 0.38 g/g. These findings suggested that the use of kenaf as the fermentation feedstock could be advantageous for the development of sustainable xylitol production.
Characterisation of genes differentially expressed in macrophages by virulent and attenuated Mycobacterium tuberculosis through RNA-Seq analysis
Authors: Lee Junghwan , Lee Sung-Gwon , Kim Kee K. , Lim Yun-Ji , Choi Ji-Ae , Cho Soo-Na , Park Chungoo , Song Chang-Hwa 
Published: March 2019

AbstractTuberculosis (TB) remains a global healthcare issue. Understanding the host-pathogen interactions in TB is vital to develop strategies and therapeutic tools for the control of Mycobacterium tuberculosis (Mtb). In this study, transcriptome analyses of macrophages infected with either the virulent Mtb strain H37Rv (Rv) or the avirulent Mtb strain H37Ra (Ra) were carried out and 750 differentially expressed genes (DEGs) were identified. As expected, the DEGs were mainly involved in the induction of innate immune responses against mycobacterial infections. Among the DEGs, solute carrier family 7 member 2 (Slc7a2) was more strongly expressed in Ra-infected macrophages. Induction of SLC7A2 was important for macrophages to control the intracellular survival of Mtb. Our results imply that SLC7A2 plays an important role in macrophages during Mtb infection. Our findings could prove useful for the development of new therapeutic strategies to control TB infection.
Metatranscriptomic evidence for classical and RuBisCO-mediated CO2 reduction to methane facilitated by direct interspecies electron transfer in a methanogenic system
Authors: Yang Peixian , Tan Giin-Yu Amy , Aslam Muhammad , Kim Jeonghwan , Lee Po-Heng 
Published: March 2019

AbstractIn a staged anaerobic fluidized-bed ceramic membrane bioreactor, metagenomic and metatranscriptomic analyses were performed to decipher the microbial interactions on the granular activated carbon. Metagenome bins, representing the predominating microbes in the bioreactor: syntrophic propionate-oxidizing bacteria (SPOB), acetoclastic Methanothrix concilii, and exoelectrogenic Geobacter lovleyi, were successfully recovered for the reconstruction and analysis of metabolic pathways involved in the transformation of fatty acids to methane. In particular, SPOB degraded propionate into acetate, which was further converted into methane and CO2 by M. concilii via the acetoclastic methanogenesis. Concurrently, G. lovleyi oxidized acetate into CO2, releasing electrons into the extracellular environment. By accepting these electrons through direct interspecies electron transfer (DIET), M. concilii was capable of performing CO2 reduction for further methane formation. Most notably, an alternative RuBisCO-mediated CO2 reduction (the reductive hexulose-phosphate (RHP) pathway) is transcriptionally-active in M. concilii. This RHP pathway enables M. concilii dominance and energy gain by carbon fixation and methanogenesis, respectively via a methyl-H4MPT intermediate, constituting the third methanogenesis route. The complete acetate reduction (2 mole methane formation/1 mole acetate consumption), coupling of acetoclastic methanogenesis and two CO2 reduction pathways, are thermodynamically favorable even under very low substrate condition (down to to 10−5 M level). Such tight interactions via both mediated and direct interspecies electron transfer (MIET and DIET), induced by the conductive GAC promote the overall efficiency of bioenergy processes.
Genetic overlap between birthweight and adult cardiometabolic diseases has implications for genomic medicine
Authors: Tekola-Ayele Fasil , Lee Anthony , Workalemahu Tsegaselassie , Zhang Wei , Shrestha Deepika , Amare Azmeraw T. , Ouidir Marion 
Published: March 2019

AbstractBefore implementing therapeutic genomic interventions for optimizing health in early life, comprehensive understanding of their effect on several traits across the life course is warranted. Abnorml birthweight is associated with cardiometabolic disease risk in adulthood; however, the extent of genetic pleiotropy in the association has not been comprehensively investigated. We tested for pleiotropy and enrichment of functional loci between birthweight and 15 cardiometabolic disease traits (CMD). We found significantly abundant genetic pleiotropy (P < 3.3 × 10−3) and enrichment of functional annotations (P < 3.3 × 10−3) in loci influencing both birthweight and CMD. We did not observe consistent effect directions of pleiotropic loci on the traits. A total of 67 genetic loci, of which 65 loci have been reported in previous genome-wide association studies, were associated with both birthweight and CMD at a false discovery rate of 5%. Two novel loci were associated with birthweight and adult coronary artery disease (rs2870463 in CTRB1) and with birthweight and adult waist circumference (rs12704673 in CALCR). Both loci are known to have regulatory effects on expression of nearby genes. In all, our findings revealed pervasive genetic pleiotropy in early growth and adulthood cardiometabolic diseases, implying the need for caution when considering genetic loci as therapeutic targets.
Placental Pathology and Neuroimaging Correlates in Neonates with Congenital Heart Disease
Authors: Schlatterer Sarah D. , Murnick Jonathan , Jacobs Marni , White Linda , Donofrio Mary T. , Limperopoulos Catherine 
Published: March 2019

AbstractCongenital heart disease (CHD) is an independent risk factor for brain injury, including stroke, and poor neurodevelopmental outcomes, and placental abnormalities may represent an additional risk factor for brain injury in neonates. The incidence and scope of placental pathology and relationship to fetal brain abnormalities in pregnancies complicated by fetal CHD has not been explored to our knowledge. In order to determine the prevalence of placental pathology findings and whether placental findings are associated with postnatal brain injury in pregnancies complicated by fetal CHD, we reviewed placental pathology reports for 51 pregnancies complicated by CHD and scored available postnatal, pre-operative brain MRI for brain pathology. Overall, 57% of CHD infants had abnormal placental pathology. Pregnancies complicated by CHD with aortic obstruction (AO) were significantly more likely than those with no obstruction to have abnormal placental pathology (79% vs. 44%). There was a trend toward more severe brain lesions amongst patients with brain lesions and placental abnormality (55% moderate/severe) compared to those without placental abnormality (11% moderate/severe). These data suggest that placental abnormalities are common in CHD and may have a compounding effect on brain lesions in this high-risk population.