bluuebunny/crossref_metadata_2025_split huggingface dataset:
Effect of trans(NO, OH)-[RuFT(Cl)(OH)NO](PF6) ruthenium nitrosyl complex on methicillin-resistant Staphylococcus epidermidis
Authors: Bocé Mathilde , Tassé Marine , Mallet-Ladeira Sonia , Pillet Flavien , Da Silva Charlotte , Vicendo Patricia , Lacroix Pascal G. , Malfant Isabelle , Rols Marie-Pierre 
Published: March 2019

AbstractAntibiotic resistance is becoming a global scourge with 700,000 deaths each year and could cause up to 10 million deaths by 2050. As an example, Staphylococcus epidermidis has emerged as a causative agent of infections often associated with implanted medical devices. S. epidermidis can form biofilms, which contribute to its pathogenicity when present in intravascular devices. These staphylococci, embedded in the biofilm matrix, are resistant to methicillin, which had long been the recommended therapy and which has nowadays been replaced by less toxic and more stable therapeutic agents. Moreover, current reports indicate that 75 to 90% of Staphylococcus epidermidis isolates from nosocomial infections are methicillin-resistant strains. The challenge of successfully combating antibiotics resistance in biofilms requires the use of compounds with a controlled mode of action that can act in combination with antibiotics. Ruthenium nitrosyl complexes are potential systems for NO release triggered by light. The influence of trans(NO, OH)-[RuFT(Cl)(OH)NO](PF6) on Staphylococcus epidermidis resistant to methicillin is described. The results show a 50% decrease in cell viability in bacteria treated with low concentrations of NO. When combined with methicillin, this low dose of NO dramatically decreases bacterial resistance and makes bacteria 100-fold more sensitive to methicillin.
Horizontally-acquired genetic elements in the mitochondrial genome of a centrohelid Marophrys sp. SRT127
Authors: Nishimura Yuki , Shiratori Takashi , Ishida Ken-ichiro , Hashimoto Tetsuo , Ohkuma Moriya , Inagaki Yuji 
Published: March 2019

AbstractMitochondrial genomes exhibit diverse features among eukaryotes in the aspect of gene content, genome structure, and the mobile genetic elements such as introns and plasmids. Although the number of published mitochondrial genomes is increasing at tremendous speed, those of several lineages remain unexplored. Here, we sequenced the complete mitochondrial genome of a unicellular heterotrophic eukaryote, Marophrys sp. SRT127 belonging to the Centroheliozoa, as the first report on this lineage. The circular-mapped mitochondrial genome, which is 113,062 bp in length, encodes 69 genes typically found in mitochondrial genomes. In addition, the Marophrys mitochondrial genome contains 19 group I introns. Of these, 11 introns have genes for homing endonuclease (HE) and phylogenetic analyses of HEs have shown that at least five Marophrys HEs are related to those in green algal plastid genomes, suggesting intron transfer between the Marophrys mitochondrion and green algal plastids. We also discovered a putative mitochondrial plasmid in linear form. Two genes encoded in the circular-mapped mitochondrial genome were found to share significant similarities to those in the linear plasmid, suggesting that the plasmid was integrated into the mitochondrial genome. These findings expand our knowledge on the diversity and evolution of the mobile genetic elements in mitochondrial genomes.
Cathelicidins PMAP-36, LL-37 and CATH-2 are similar peptides with different modes of action
Authors: Scheenstra Maaike R. , van den Belt Matthias , Tjeerdsma-van Bokhoven Johanna L. M. , Schneider Viktoria A. F. , Ordonez Soledad R. , van Dijk Albert , Veldhuizen Edwin J. A. , Haagsman Henk P. 
Published: March 2019

AbstractHost defense peptides (HDPs) play a pivotal role in innate immunity and have, in addition to antimicrobial activity, also important immunomodulatory functions. Bacteria are less likely to develop resistance against HDPs because these peptides target and kill bacteria in multiple ways, as well as modulate the immune system. Therefore, HDPs, and derivatives thereof, are promising alternatives to traditional antibiotics. Hardly anything is known about the immunomodulatory functions of porcine cathelicidin PMAP-36. In this study, we aimed to determine both antibacterial and immunomodulatory activities of PMAP-36 comparing the properties of PMAP-36 analogs with two well-studied peptides, human LL-37 and chicken CATH-2. Transmission electron microscopy revealed different killing mechanisms of E. coli for PMAP-36, CATH-2 and LL-37. LL-37 binds LPS very weakly in contrast to PMAP-36, but it inhibits LPS activation of macrophages the strongest. The first 11 amino acids of the N-terminal side of PMAP-36 are dispensable for E. coli killing, LPS-neutralization and binding. Deletion of four additional amino acids resulted in a strong decrease in activity. The activity of full length PMAP-36 was not affected by monomerization, whereas the shorter analogs require dimerization for proper immunomodulatory activity but not for their antibacterial activity.
DNA polymerase ι is acetylated in response to SN2 alkylating agents
Authors: McIntyre Justyna , Sobolewska Aleksandra , Fedorowicz Mikolaj , McLenigan Mary P. , Macias Matylda , Woodgate Roger , Sledziewska-Gojska Ewa 
Published: March 2019

AbstractDNA polymerase iota (Polι) belongs to the Y-family of DNA polymerases that are involved in DNA damage tolerance through their role in translesion DNA synthesis. Like all other Y-family polymerases, Polι interacts with proliferating cell nuclear antigen (PCNA), Rev1, ubiquitin and ubiquitinated-PCNA and is also ubiquitinated itself. Here, we report that Polι also interacts with the p300 acetyltransferase and is acetylated. The primary acetylation site is K550, located in the Rev1-interacting region. However, K550 amino acid substitutions have no effect on Polι’s ability to interact with Rev1. Interestingly, we find that acetylation of Polι significantly and specifically increases in response to SN2 alkylating agents and to a lower extent to SN1 alkylating and oxidative agents. As we have not observed acetylation of Polι’s closest paralogue, DNA polymerase eta (Polη), with which Polι shares many functional similarities, we believe that this modification might exclusively regulate yet to be determined, and separate function(s) of Polι.
The Virtual-Environment-Foraging Task enables rapid training and single-trial metrics of rule acquisition and reversal in head-fixed mice
Authors: Havenith Martha N. , Zijderveld Peter M. , van Heukelum Sabrina , Abghari Shaghayegh , Tiesinga Paul , Glennon Jeffrey C. 
Published: March 2019

AbstractBehavioural flexibility is an essential survival skill, yet our understanding of its neuronal substrates is still limited. While mouse research offers unique tools to dissect the neuronal circuits involved, the measurement of flexible behaviour in mice often suffers from long training times, poor experimental control, and temporally imprecise binary (hit/miss) performance readouts. Here we present a virtual-environment task for mice that tackles these limitations. It offers fast training of vision-based rule reversals (~100 trials per reversal) with full stimulus control and continuous behavioural readouts. By generating multiple non-binary performance metrics per trial, it provides single-trial estimates not only of response accuracy and speed, but also of underlying processes like choice certainty and alertness (discussed in detail in a companion paper). Based on these metrics, we show that mice can predict new task rules long before they are able to execute them, and that this delay varies across animals. We also provide and validate single-trial estimates of whether an error was committed with or without awareness of the task rule. By tracking in unprecedented detail the cognitive dynamics underlying flexible behaviour, this task enables new investigations into the neuronal interactions that shape behavioural flexibility moment by moment.
Prenatal Allergen Exposure Perturbs Sexual Differentiation and Programs Lifelong Changes in Adult Social and Sexual Behavior
Authors: Lenz Kathryn M. , Pickett Lindsay A. , Wright Christopher L. , Galan Anabel , McCarthy Margaret M. 
Published: March 2019

AbstractSexual differentiation is the early life process by which the brain is prepared for male or female typical behaviors, and is directed by sex chromosomes, hormones and early life experiences. We have recently found that innate immune cells residing in the brain, including microglia and mast cells, are more numerous in the male than female rat brain. Neuroimmune cells are also key participants in the sexual differentiation process, specifically organizing the synaptic development of the preoptic area and leading to male-typical sexual behavior in adulthood. Mast cells are known for their roles in allergic responses, thus in this study we sought to determine if exposure to an allergic response of the pregnant female in utero would alter the sexual differentiation of the preoptic area of offspring and resulting sociosexual behavior in later life. Pregnant rats were sensitized to ovalbumin (OVA), bred, and challenged intranasally with OVA on gestational day 15, which produced robust allergic inflammation, as measured by elevated immunoglobulin E. Offspring of these challenged mother rats were assessed relative to control rats in the early neonatal period for mast cell and microglia activation within their brains, downstream dendritic spine patterning on POA neurons, or grown to adulthood to assess behavior and dendritic spines. In utero exposure to allergic inflammation increased mast cell and microglia activation in the neonatal brain, and led to masculinization of dendritic spine density in the female POA. In adulthood, OVA-exposed females showed an increase in male-typical mounting behavior relative to control females. In contrast, OVA-exposed males showed evidence of dysmasculinization, including reduced microglia activation, reduced neonatal dendritic spine density, decreased male-typical copulatory behavior, and decreased olfactory preference for female-typical cues. Together these studies show that early life allergic events may contribute to natural variations in both male and female sexual behavior, potentially via underlying effects on brain-resident mast cells.
Pollen grain morphology is not exclusively responsible for pollen collectability in bumble bees
Authors: Konzmann Sabine , Koethe Sebastian , Lunau Klaus 
Published: March 2019

AbstractBee-pollinated plants face a dilemma in that bees both passively transport pollen grains among conspecific flowers and actively collect pollen to feed their larvae. Therefore, mechanisms that reduce pollen collection by bees have evolved in melittophilous plants. Malvaceae pollen is uncollectable for corbiculate bees which has previously been ascribed to pollen size, spines, and pollenkitt. We analysed the influence of pollen grain properties (diameter, spine length, spine density) on the collectability of echinate (spiny) pollen by bumble bees (Bombus terrestris). Workers individually foraging on one of eight plant species from six families performed significantly less pollen foraging on plants which have large, echinate pollen grains. Nevertheless, neither pollen grain size, spine length, nor spine density prove to be an absolute disqualifier for collectability. While pollen foragers did not shift to nectar collection but seized visiting flowers with uncollectable pollen, nectar foragers performed regular foraging bouts on these plants. Pollen that is uncollectable for corbiculate bees limits pollen depletion by generalist bumble bees and probably also honey bees while maintaining them as pollinators, which is an effective solution to the pollen dilemma. As previous assumptions about the impact of pollen morphology on its collectability are disproved, potentially determining factors are discussed.
Effects of Lightning on the Magnetic Properties of Volcanic Ash
Authors: Genareau Kimberly , Hong Yang-Ki , Lee Woncheol , Choi Minyeong , Rostaghi-Chalaki Mojtaba , Gharghabi Pedram , Gafford James , Klüss Joni 
Published: March 2019

AbstractHigh-current impulse experiments were performed on volcanic ash samples to determine the magnetic effects that may result from the occurrence of volcanic lightning during explosive eruptions. Pseudo-ash was manufactured through milling and sieving of eruptive deposits with different bulk compositions and mineral contents. By comparing pre- and post-experimental samples, it was found that the saturation (i.e., maximum possible) magnetization increased, and coercivity (i.e., ability to withstand demagnetization) decreased. The increase in saturation magnetization was greater for compositionally evolved samples compared to more primitive samples subjected to equivalent currents. Changes in remanent (i.e., residual) magnetization do not correlate with composition, and show wide variability. Variations in magnetic properties were generally more significant when samples were subjected to higher peak currents as higher currents affect a greater proportion of the subjected sample. The electrons introduced by the current impulse cause reduction and devolatilization of the ash grains, changing their structural, mineralogical, and magnetic properties.
A novel assay for detection and quantification of C-mannosyl tryptophan in normal or diabetic mice
Authors: Sakurai Sho , Inai Yoko , Minakata Shiho , Manabe Shino , Ito Yukishige , Ihara Yoshito 
Published: March 2019

AbstractC-Mannosyl tryptophan (C-Man-Trp) is a unique molecule in that an α-mannose is connected to the indole C2 carbon atom of a Trp residue via C-glycosidic linkage. Although serum C-Man-Trp may be a novel biomarker of renal function in humans, the biological significance of C-Man-Trp has yet to be fully investigated. In this study, a novel assay system for C-Man-Trp was established using hydrophilic-interaction liquid chromatography, followed by detecting the fluorescence intensity or mass abundance of C-Man-Trp. Using this system, we systematically assessed the amount of free monomeric C-Man-Trp in different tissues of mice. The tissue level of C-Man-Trp was high, especially in the ovaries and uterus. Other organs with high levels of C-Man-Trp included the brain, spleen, lungs, bladder, and testes. The level was low in skeletal muscle. We also investigated whether the tissue level of C-Man-Trp is affected in diabetes. In KK-Ay diabetic mice, the level of urinary C-Man-Trp excretion was increased, and the tissue levels of C-Man-Trp were decreased in the liver but increased in the kidney. These results demonstrate that C-Man-Trp is differentially distributed in numerous tissues and organs in mice, and the levels are altered by disordered carbohydrate metabolism such as diabetes.
CX3CR1-CX3CL1-dependent cell-to-cell Japanese encephalitis virus transmission by human microglial cells
Authors: Lannes Nils , Garcia-Nicolàs Obdullio , Démoulins Thomas , Summerfield Artur , Filgueira Luis 
Published: March 2019

AbstractThe neurotropic Japanese encephalitis virus (JEV) is responsible for Japanese encephalitis, an uncontrolled inflammatory disease of the central nervous system. Microglia cells are the unique innate immune cell type populating the brain that cross-communicate with neurons via the CX3CR1-CX3CL1 axis. However, microglia may serve as a viral reservoir for JEV. Human microglia are able to transmit JEV infectivity to neighbouring cells in a cell-to-cell contact-dependent manner. Using JEV-treated human blood monocyte-derived microglia, the present study investigates molecular mechanisms behind cell-to-cell virus transmission by human microglia. For that purpose, JEV-associated microglia were co-cultured with JEV susceptible baby hamster kidney cells under various conditions. Here, we show that microglia hosting JEV for up to 10 days were able to transmit the virus to susceptible cells. Interestingly, neutralizing anti-JEV antibodies did not completely abrogate cell-to-cell virus transmission. Hence, intracellular viral RNA could be a contributing source of infectious virus material upon intercellular interactions. Importantly, the CX3CL1-CX3CR1 axis was a key regulator of cell-to-cell virus transmission from JEV-hosting human microglia. Our findings suggest that human microglia may be a source of infection for neuronal populations and sustain JEV brain pathogenesis in long-term infection. Moreover, the present work emphasizes on the critical role of the CX3CR1-CX3CL1 axis in JEV pathogenesis mediating transmission of infectious genomic JEV RNA.
Characterisation of resistance mechanisms developed by basal cell carcinoma cells in response to repeated cycles of Photodynamic Therapy
Authors: Lucena Silvia Rocio , Zamarrón Alicia , Carrasco Elisa , Marigil Miguel Angel , Mascaraque Marta , Fernández-Guarino Montserrat , Gilaberte Yolanda , González Salvador , Juarranz Angeles 
Published: March 2019

AbstractPhotodynamic Therapy (PDT) with methyl-aminolevulinate acid (MAL-PDT) is being used for the treatment of Basal cell carcinoma (BCC), but recurrences have been reported. In this work, we have evaluated resistance mechanisms to MAL-PDT developed by three BCC cell lines (ASZ, BSZ and CSZ), derived from mice on a ptch+/− background and with or without p53 expression, subjected to 10 cycles of PDT (10thG). The resistant populations showed mesenchymal-like structure and diminished proliferative capacity and size compared to the parental (P) cells. The resistance was dependent on the production of the endogenous photosensitiser protoporphyrin IX in the CSZ cell line and on its cellular localisation in ASZ and BSZ cells. Moreover, resistant cells expressing the p53 gene presented lower proliferation rate and increased expression levels of N-cadherin and Gsk3β (a component of the Wnt/β-catenin pathway) than P cells. In contrast, 10thG cells lacking the p53 gene showed lower levels of expression of Gsk3β in the cytoplasm and of E-cadherin and β-catenin in the membrane. In addition, resistant cells presented higher tumorigenic ability in immunosuppressed mice. Altogether, these results shed light on resistance mechanisms of BCC to PDT and may help to improve the use of this therapeutic approach.
Hybrid quantum linear equation algorithm and its experimental test on IBM Quantum Experience
Authors: Lee Yonghae , Joo Jaewoo , Lee Soojoon 
Published: March 2019

AbstractWe propose a hybrid quantum algorithm based on the Harrow-Hassidim-Lloyd (HHL) algorithm for solving a system of linear equations. In this paper, we show that our hybrid algorithm can reduce a circuit depth from the original HHL algorithm by means of a classical information feed-forward after the quantum phase estimation algorithm, and the results of the hybrid algorithm are identical to those of the HHL algorithm. In addition, it is experimentally examined with four qubits in the IBM Quantum Experience setups, and the experimental results of our algorithm show higher accurate performance on specific systems of linear equations than that of the HHL algorithm.
Association between Helicobacter pylori infection and non-alcoholic fatty liver disease in North Chinese: a cross-sectional study
Authors: Jiang Tian , Chen Xia , Xia Chenmei , Liu Huamin , Yan Haifan , Wang Guoping , Wu Zhongbiao 
Published: March 2019

AbstractNon-alcoholic fatty liver disease (NAFLD) is a common liver disease. Previous studies on the association betweenHelicobacter pylori(HP) infection and NAFLD are inconsistent. Our study was aimed to find out the relationship between HP infection and NAFLD. We performed a large cross-sectional study in northern Chinese adults in 2015.13C-urea breath tests were used to determine HP infection status. Abdominal ultrasonography was performed to diagnose NAFLD. Multivariable logistic regression was conducted to identify the association between HP infection and NAFLD. A total of 4081 individuals were included in this study; 2137 (52.36%) participants were HP-positive, and 1022 (47.82%) were diagnosed with NAFLD in HP-positive individuals. The odds ratios (OR) and 95% confidence intervals (CI) of participants with HP infection for NAFLD were 1.20 (1.06–1.36) in crude model and 1.27 (1.07–1.50) in fully adjusted model. When stratified by sex and dyslipidemia, the fully adjusted OR and 95% CI for NAFLD were 1.22 (1.10–1.80) in females and 1.44 (1.18–1.75) in subjects with dyslipidemia. There were not significant increased OR for NAFLD when stratified by age. The study indicate that HP infection is associated with NAFLD, particularly in females and patients with dyslipidemia, suggesting that HP eradication might be an alternative method for the prevention or treatment of NAFLD treatment.
WO3 in suit embed into MIL-101 for enhancement charge carrier separation of photocatalyst
Authors: Wang Linjuan , Zan Ling 
Published: March 2019

AbstractCompositing nanoparticles photo-catalyst with enormous surface areas metal–organic framework (MOF) will greatly improve photocatalytic performances. Herein, WO3nanoparticles are partly embedded into pores of MIL-101 or only supported on the outside of representative MIL-101, which were defined as embedded structure WO3@MIL-101@WO3and coating structure WO3&MIL-101 respectively. Different pH, concentration and loading percentage were researched. XRD, TEM and BET were carried to analyze the composites. Compared with the pristine WO3, all WO3loaded MOF nanocomposites exhibited remarkable enhancing for the efficiency of photocatalytic degradation methylene blue under visible light. Their activity of the same loading percentage WO3in embedded structure and coating structure have increased for 9 and 3 times respectively compared with pure WO3. The WO3@MIL-101@WO3has 3 times higher efficiency than WO3&MIL-101, because the shorter electron-transport distance can make a contribution to electron–hole separation. The further mechanism involved has been investigated by radical quantify experiment, XPS and photoluminescence spectroscopy.
Grammatical class modulates the (left) inferior frontal gyrus within 100 milliseconds when syntactic context is predictive
Authors: Strijkers Kristof , Chanoine Valerie , Munding Dashiel , Dubarry Anne-Sophie , Trébuchon Agnès , Badier Jean-Michel , Alario F.-Xavier 
Published: March 2019

AbstractThe current study set out to examine the spatiotemporal dynamics of predictive processing during syntactic processing. To do so, we conducted an MEG experiment in which we contrasted MRI-constrained sources elicited by nouns and verbs when they were preceded by a predictive syntactic context (i.e., possessive pronouns for nouns, and personal pronouns for verbs) versus a non-predictive syntactic context (visually matched symbols). The results showed rapid (from ~80 ms onwards) noun-verb differences in the left and (to a lesser extent) right inferior frontal gyri (IFG), but only when those nouns and verbs were preceded by the syntactically predictive context (i.e. their corresponding pronoun). Furthermore, the contrast between possessive and personal pronouns that preceded the rapid noun-verb modulations in the (L)IFG also produced differences in source activation in various regions of the prefrontal cortex (the superior frontal and orbitofrontal cortex). We suggest the data show that syntactic unification manifests very early on during processing in the LIFG. The speed of such syntactic unification operations is hypothesized to be driven by predictive top-down activations stemming from a domain-general network in the prefrontal cortex.