bluuebunny/crossref_metadata_2025_split huggingface dataset:
The foraging behavior of Japanese macaques Macaca fuscata in a forested enclosure: Effects of nutrient composition, energy and its seasonal variation on the consumption of natural plant foods
Authors: Jaman M. Firoj , Huffman Michael A. , Takemoto Hiroyuki 
Published: September 2019

Abstract
In the wild, primate foraging behaviors are related to the diversity and nutritional properties of food, which are affected by seasonal variation. The goal of environmental enrichment is to stimulate captive animals to exhibit similar foraging behavior of their wild counterparts, e.g. to extend foraging time. We conducted a 12-month study on the foraging behavior of Japanese macaques in a semi-naturally forested enclosure to understand how they use both provisioned foods and naturally available plant foods and what are the nutritional criteria of their consumption of natural plants. We recorded time spent feeding on provisioned and natural plant foods and collected the plant parts ingested of their major plant food species monthly, when available. We conducted nutritional analysis (crude protein, crude lipid, neutral detergent fiber-‘NDF’, ash) and calculated total non-structural carbohydrate – ‘TNC’ and total energy of those food items. Monkeys spent 47% of their feeding time foraging on natural plant species. The consumption of plant parts varied significantly across seasons. We found that leaf items were consumed in months when crude protein, crude protein-to-NDF ratio, TNC and total energy were significantly higher and NDF was significantly lower, fruit/nut items in months when crude protein and TNC were significantly higher and crude lipid content was significantly lower, and bark items in months when TNC and total energy were higher and crude lipid content was lower. This preliminary investigation showed that the forested enclosure allowed troop members to more fully express their species typical flexible behavior by challenging them to adjust their foraging behavior to seasonal changes of plant item diversity and nutritional content, also providing the possibility for individuals to nutritionally enhance their diet.
Lamprey buccal gland secretory protein-2 (BGSP-2) inhibits human T lymphocyte proliferation
Authors: Sun Jing , Yu Shuiyan , Xue Zhuang , Liu Cenjie , Wu Yu , Liu Xin , Li Qingwei 
Published: September 2019

Abstract
Lamprey is a representative of the agnathans, the most ancient class of vertebrates. Parasitic lampreys secrete anticoagulant from their buccal glands and prevent blood coagulation of host fishes. We identified a buccal gland secretory protein-2 (BGSP-2) from a buccal gland cDNA library of Lampetra japonica. The full-length BGSP-2 gene was cloned and the recombinant BGSP-2 protein was generated. The role of BGSP-2 on lymphocyte proliferation was studied by examining its effects on human T lymphocytes. We found that lamprey BGSP-2 was able to effectively block the proliferation of T cells in vitro by inducing G1/S cell cycle arrest. Furthermore, it inhibited the proliferation of human T lymphocytes stimulated by phytohemagglutinin (PHA) at a minimum concentration of 0.μg/ml. Our data suggest that lamprey BGSP-2 is able to block the mitosis of human T lymphocytes at the G1/S point, and has the potential of anti-proliferative effect on PHA-activated T lymphocytes.
Female mate choice and the potential for ornament evolution in túngara frogs Physalaemus pustulosus
Authors: Ryan Michael J. , Bernal Ximena E. , Rand A. Stanley 
Published: September 2019

Abstract
The potential for ornament evolution in response to sexual selection rests on the interaction between the permissiveness or selectivity of female preferences and the constraints on male development of signaling related traits. We investigate the former by determining how latent female preferences either exaggerate the magnitude of current traits (i.e. elaborations) or favor novel traits (i.e. innovations). In túngara frogs, females prefer complex mating calls (whine-chucks) to simple calls (whine only). The whine is critical for mate recognition while the chuck further enhances the attractiveness of the call. Here we use a combination of synthetic and natural stimuli to examine latent female preferences. Our results show that a diversity of stimuli, including conspecific and heterospecific calls as well as predator-produced and human-made sounds, increase the attractiveness of a call when added to a whine. These stimuli do not make simple calls more attractive than a whine-chuck, however. In rare cases we found stimuli that added to the whine decrease the attractiveness of the call. Overall, females show strong preferences for both elaborations and innovations of the chuck. We argue that the emancipation of these acoustic adornments from mate recognition allows such female permissiveness, and that male constraints on signal evolution are probably more important in explaining why males evolved their specific adornment. Experimentally probing latent female preferences for stimuli out of the species‘ range is a useful means to gain insights about the potential of female choice to influence signal evolution and thus the astounding diversity in male sexually-selected traits.
Habitat relationships of reptiles in pine beetle disturbed forests of Alabama, U.S.A. with guidelines for a modified drift-fence sampling method
Authors: Sutton W. B. , Wang Y. , Schweitzer C. J. 
Published: September 2019

Abstract
Understanding vertebrate habitat relationships is important to promote management strategies for the longterm conservation of many species. Using a modified drift fence method, we sampled reptiles and compared habitat variables within the William B. Bankhead National Forest (BNF) in Alabama, U.S.A from April 2005 to June 2006. We captured 226 individual reptiles representing 19 species during 564 total trap nights. We used canonical correspondence analysis to examine habitat associations for the reptiles sampled and we detected a distinct habitat gradient ranging from sites with greater litter depth and percent canopy cover to more open sites with greater woody, herbaceous, and coarse woody debris (CWD) coverage, and CWD volume. Little brown skinks Scincella lateralis and eastern worm snakes Carphophis a. amoenus were associated with sites with greater litter depth and canopy cover, whereas eastern fence lizards Sceloporus undulatus, copperheads Agkistrodon contortrix, and gray ratsnakes Pantherophis spiloides were associated with sites possessing greater CWD coverage and volume. We found that disturbances due to the southern pine beetle Dendroctonus frontalis were likely important for influencing reptile distributions through the creation of canopy gaps and fallen coarse woody debris. Compared to other studies, our modified drift-fence trap technique was successful for sampling larger snake species (66 snakes in 564 trap nights). We have also provided detailed schematics for constructing drift fence array and box traps used in this study.
Central pattern generation underlying Limulus rhythmic behavior patterns
Authors: Wyse Gordon A. 
Published: September 2019

Abstract
Many behavioral activities of the horseshoe crab Limulus are rhythmic, and most of these are produced in large part by central pattern generators within the CNS. The chain of opisthosomal ('abdominal') ganglia controls gill movements of ventilation and gill cleaning, and the prosomal ring of fused ganglia (brain and segmental 'thoracic' ganglia) controls generation of feeding and locomotor movements of the legs. Both the opisthosomal CNS and the prosomal CNS can generate behaviorally appropriate patterns of motor output in isolation, without movements or sensory input. Preparations of the isolated opisthosomal CNS generate rhythmic output patterns of motor activity characterized as fictive ventilatory and gill cleaning rhythms. Moreover, CNS preparations also express longer-term patterns, such as intermittent ventilation or sequential bouts of ventilation and gill cleaning. Such longer-term patterns are commonly observed in intact animals. The isolated prosomal CNS does not spontaneously generate the activity patterns characteristic of walking, swimming, and feeding. However, perfusion of octopamine in the isolated prosomal CNS activates central pattern generators underlying rhythmic chewing movements, and injection of octopamine into intact Limulus promotes the chewing pattern of feeding, whether or not food is presented. Our understanding of the ability of neuromodulators such as octopamine to elicit or alter central motor programs may help to clarify the central neural circuits of pattern generation that produce and coordinate these rhythmic behaviors.
High resolution tracking of adult horseshoe crabs Limulus polyphemus in a New Hampshire estuary using fixed array ultrasonic telemetry
Authors: Watson Winsor H. , Chabot Christopher C. 
Published: September 2019

Abstract
While several studies have documented the large-scale, seasonal movements of horseshoe crabs, little is known about their fine-scale, daily movement patterns. In this study we used a fixed array ultrasonic telemetry system to track the movements of 12 male and 16 female horseshoe crabs in the Great Bay estuary, New Hampshire. Data were obtained during the mating season, as well as during the remainder of the summer and fall, in the years 2005-2008. During the mating season animals were often, but not always, active during the high tides when they were approaching and leaving the spawning beaches. On average, both males and females approached mating beaches during 33% of the high tides they experienced and they most often made the transition from being inactive to active during the last two hours of an incoming tide. From April-October horseshoe crabs were significantly more active during high tide periods vs low tide periods, with no clear preference for diurnal vs nocturnal activity. After the mating season ended horseshoe crabs continued to move into shallower water at high tide and then return to deeper water at low tide. Observations by SCUBA divers suggest that during these excursions into the mudflats horseshoe crabs were digging pits in the sediment while foraging for food. Thus, the tidal rhythm of activity that has been so well documented during the mating season probably persists into the fall, and primarily involves foraging activities.
Orientation of larval and juvenile horseshoe crabs Limulus polyphemus to visual cues: Effects of chemical odors
Authors: Medina Julie M. , Tankersley Richard A. 
Published: September 2019

Abstract
Adult horseshoe crabs Limulus polyphemus have long served as models for the study of vision in marine arthropods. Yet, little is known about the ability of early life history stages to detect and respond to visual cues. We examined the visually directed movements of larvae and first stage juveniles to horizons containing dark visual targets of different sizes. The study tested the hypotheses that (1) larval and juvenile crabs can detect and respond to visual targets and (2) the direction of orientation varies with the presence of chemical cues associated with settlement habitats. Orientation of larval and juvenile crabs to rectangles subtending angles from 30–330° was tested in a circular arena containing water that either lacked estuarine chemical cues (offshore water) or contained odors from aquatic vegetation or known predators. In the absence of chemical odors, larvae oriented toward and juveniles moved away from dark horizons subtending angles > 60°. When placed in water containing chemical odors from potential nursery habitats, including the seagrasses Halodule wrightii and Syringodium filiforme, crabs reversed their direction of orientation relative to their responses in offshore water. Odors from two known predators, the mummichug Fundulus grandis and blue crab Callinectes sapidus, had no affect on the orientation of larvae. Yet, juveniles responded to both odors by moving toward the visual target. Results support the hypothesis that the visual orientation of larval and juvenile horseshoe crabs changes upon exposure to habitat and predator cues and that the direction of the response undergoes an ontogenetic shift following metamorphosis.
Activity budget of Rhinopithecus bieti at Tibet: Effects of day length, temperature and food availability
Authors: Xiang Zuofu , Huo Sheng , Xiao Wen 
Published: September 2019

Abstract
How animals allocate their time to various activities has significant consequences for their survival because they reflect the different constraints on time-energy balances. Many ecological variables, such as day length, temperature, food availability, are supposed to effect on activity budgets allocation of temperate primates. To examine the potential influence of these three variables, the activity budgets of Rhinopithecus bieti was studied at Xiaochangdu, Tibet from June 2003 to March 2005. Pearson correlations were utilized to assess potential relationships between activity budget and day length, food availability and temperature, and stepwise multiple regressions to identify the priority of resting and other activities (activities besides feeding, moving and resting). Time spent resting and doing "other activities" is positively related to day length, temperature and food availability. No significant correlations were found between feeding/moving time and any of these variables. This suggests that foraging time (feeding + moving) takes priority over rest and other activities. Day length and foraging time (as independent variables) were related to the time spent in the other two activities besides feeding/moving (as dependent variables). Both time spent resting and in "other activities" were highly significant positive functions of day length, with the latter a highly significant negative function of feeding time and moving time. Resting time may therefore be interpreted as taking priority over "other activities" time. These results provide further evidence of the importance of day length, temperature and food availability to seasonal activity budgets .
Loss of CO2 sensing by the olfactory system of CNGA3 knockout mice
Authors: Han Jinlong , Luo Minmin 
Published: September 2019

Abstract
Atmospheric CO2 can signal the presence of food, predators or environmental stress and trigger stereotypical behaviors in both vertebrates and invertebrates. Recent studies have shown that the necklace olfactory system in mice sensitively detects CO2 in the air. Olfactory CO2 neurons are believed to rely on cyclic guanosine monophosphate (cGMP) as the key second messenger; however, the specific ion channel underlying CO2 responses remains unclear. Here we show that CO2-evoked neuronal and behavioral responses require cyclic nucleotide-gated (CNG) channels consisting of the CNGA3 subunit. Through Ca2+-imaging, we found that CO2-triggered Ca2+ influx was abolished in necklace olfactory sensory neurons (OSNs) of CNGA3-knockout mice. Olfactory detection tests using a Go/No-go paradigm showed that these knockout mice failed to detect 0.5% CO2. Thus, sensitive detection of atmospheric CO2 depends on the function of CNG channels consisting of the CNGA3 subunit in necklace OSNs. These data support the important role of the necklace olfactory system in CO2 sensing and extend our understanding of the signal transduction pathway mediating CO2 detection in mammals.
Variation benchmark datasets: update, criteria, quality and applications
Authors: Sarkar Anasua , Yang Yang , Vihinen Mauno 
Published: September 2019

Abstract
Development of new computational methods and testing their performance has to be carried out using experimental data. Only in comparison to existing knowledge can method performance be assessed. For that purpose, benchmark datasets with known and verified outcome are needed. High-quality benchmark datasets are valuable and may be difficult, laborious and time consuming to generate. VariBench and VariSNP are the two existing databases for sharing variation benchmark datasets used mainly for variation interpretation. They have been used for training and benchmarking predictors for various types of variations and their effects. VariBench was updated with 419 new datasets from 109 papers containing altogether 329 014 152 variants; however, there is plenty of redundancy between the datasets. VariBench is freely available at http://structure.bmc.lu.se/VariBench/. The contents of the datasets vary depending on information in the original source. The available datasets have been categorized into 20 groups and subgroups. There are datasets for insertions and deletions, substitutions in coding and non-coding region, structure mapped, synonymous and benign variants. Effect-specific datasets include DNA regulatory elements, RNA splicing, and protein property for aggregation, binding free energy, disorder and stability. Then there are several datasets for molecule-specific and disease-specific applications, as well as one dataset for variation phenotype effects. Variants are often described at three molecular levels (DNA, RNA and protein) and sometimes also at the protein structural level including relevant cross references and variant descriptions. The updated VariBench facilitates development and testing of new methods and comparison of obtained performances to previously published methods. We compared the performance of the pathogenicity/tolerance predictor PON-P2 to several benchmark studies, and show that such comparisons are feasible and useful, however, there may be limitations due to lack of provided details and shared data.
Database URL: http://structure.bmc.lu.se/VariBench
Footprints and Ootheca of Lycorma delicatula Influence Host-Searching and -Acceptance of the Egg-Parasitoid Anastatus orientalis
Authors: Malek Robert , Kaser Joe M , Broadley Hannah J , Gould Juli , Ciolli Marco , Anfora Gianfranco , Hoelmer Kim A 
Published: September 2019

AbstractThe spotted lanternfly, Lycorma delicatula White (1845) (Hemiptera: Fulgoridae), is an invasive insect that was first reported in North America in Berks County, Pennsylvania, in 2014. It is a polyphagous phloem feeder that attacks over 70 plant species, threatening the agricultural, lumber, and ornamental industries of North America. Infestations of the pest have been reported in several U.S. counties, and a lack of endemic predators and parasitoids feeding on L. delicatula suggests a release from natural enemies in the invaded range. An egg-parasitoid Anastatus orientalis (Hymenoptera: Eupelmidae) was reported attacking L. delicatula at high rates in its native range and may play a key role in reducing its populations there. To better understand the foraging behavior of A. orientalis, a series of behavioral experiments were conducted to determine successful parasitism and behavioral responses to traces left by adult L. delicatula and to the oothecae which cover their eggs. Our results suggest that wasps detected chemical traces left by L. delicatula adults while walking on surfaces and exhibited a strong arrestment response. Moreover, wasps preferred to oviposit in egg masses with intact oothecae. The implications of these findings are herein discussed with regard to the exploitation of host kairomones by foraging wasps, as well as to its ability to overcome host structural defenses.
How does the duration of consults vary for upper respiratory tract infections in general practice where an antibiotic has been prescribed?
Authors: Darlison Shepherd Phoebe R , Krejany Catherine J , Jiwa Moyez 
Published: September 2019

AbstractBackgroundThere is limited data on the duration of consults resulting in the prescription of antibiotics for upper respiratory tract infections (URTIs) in general practice.ObjectiveTo explore how demographic factors influence consult duration where antibiotics have been prescribed for URTI in Australian general practice.Methods2985 URTI-specific presentations were identified from a national study of patients who were prescribed an antibiotic after presenting to general practice between June and September 2017. Consult duration was analysed to assess for any variation in visit length based on demographic factors.ResultsThe overall median consult duration was 11.42 minutes [interquartile range (IQR) 7.95]. Longer consult duration was associated with areas of highest socio-economic advantage where patients living in postcodes of Index of Relative Socio-economic Advantage and Disadvantage (IRSAD) Quintile 5 (highest 20% on the IRSAD) had significantly longer consults [median 13.12 (IQR 8.01)] than all other quintiles (P < 0.001). Females [11.75 (IQR 8.13)] had significantly longer consults than males [10.87 (IQR 7.57); P < 0.001]. Clinics based in State C and State F had significantly shorter consults when compared with all other included states and territories (P < 0.001) and shorter consult duration was associated with visits on Sundays [median 8.18 (IQR 5.04)].ConclusionThere is evidence for the association of demographic and temporal factors with the duration of consultations for URTIs where an antibiotic has been prescribed. These factors warrant further research.
Transcriptional signatures of Mycobacterium tuberculosis in mouse model of intraocular tuberculosis
Authors: Abhishek Sudhanshu , Ryndak Michelle Beth , Choudhary Alpa , Sharma Sumedha , Gupta Amod , Gupta Vishali , Singh Nirbhai , Laal Suman , Verma Indu 
Published: September 2019

ABSTRACT

Background
Studies on human intraocular tuberculosis (IOTB) are extremely challenging. For understanding the pathogenesis of IOTB, it is important to investigate the mycobacterial transcriptional changes in ocular environment.

Methods
Mice were challenged intravenously with Mycobacterium tuberculosis H37Rv and at 45 days post-infection, experimental IOTB was confirmed based on bacteriological and molecular assays. M. tuberculosis transcriptome was analyzed in the infected eyes using microarray technology. The identified M. tuberculosis signature genes were further validated and investigated in human IOTB samples using real-time polymerase chain reaction.

Results
Following intravenous challenge with M. tuberculosis, 45% (5/12) mice showed bacilli in the eyes with positivity for M. tuberculosis ribonucleic acid in 100% (12/12), thus confirming the paucibacillary nature of IOTB similar to human IOTB. M. tuberculosis transcriptome in these infected eyes showed significant upregulation of 12 M. tuberculosis genes and five of these transcripts (Rv0962c, Rv0984, Rv2612c, Rv0974c and Rv0971c) were also identified in human clinically confirmed cases of IOTB.

Conclusions
Differentially expressed mycobacterial genes identified in an intravenously challenged paucibacillary mouse IOTB model and presence of these transcripts in human IOTB samples highlight the possible role of these genes for survival of M. tuberculosis in the ocular environment, thus contributing to pathogenesis of IOTB.