bluuebunny/crossref_metadata_2025_split huggingface dataset:
Reduced Mineralization of Terrestrial OC in Anoxic Sediment Suggests Enhanced Burial Efficiency in Reservoirs Compared to Other Depositional Environments
Authors: Isidorova Anastasija , Mendonça Raquel , Sobek Sebastian 
Published: February 2019

AbstractFreshwater reservoirs are important sites of organic carbon (OC) burial, but the extent to which reservoir OC burial is a new anthropogenic carbon sink is currently unclear. While burial of aquatic OC (by, e.g., phytoplankton) in reservoirs may count as a new C sink, the burial of terrestrial OC in reservoirs constitutes a new C sink only if the burial is more efficient in reservoirs than in other depositional environments. We carried out incubation experiments that mimicked the environmental conditions of different depositional environments along the land‐sea continuum (oxic and anoxic freshwater, oxic and anoxic seawater, oxic river bedload, and atmosphere‐exposed floodplain) to investigate whether reservoirs bury OC more efficiently compared to other depositional environments. For sediment OC predominantly of terrestrial origin, OC degradation rates were significantly lower, by a factor of 2, at anoxic freshwater and saltwater conditions compared to oxic freshwater and saltwater, river, and floodplain conditions. However, the transformation of predominantly terrestrial OC to methane was one order of magnitude higher in anoxic freshwater than at other conditions. For sediment OC predominantly of aquatic origin, OC degradation rates were uniformly high at all conditions, implying equally low burial efficiency of aquatic OC (76% C loss in 57 days). Since anoxia is more common in reservoirs than in the coastal ocean, these results suggest that reservoirs are a depositional environment in which terrestrial OC is prone to become buried at higher efficiency than in the ocean but where also the terrestrial OC most efficiently is transformed to methane.
miR-1260b, mediated by YY1, activates KIT signaling by targeting SOCS6 to regulate cell proliferation and apoptosis in NSCLC
Authors: Xia Yang , Wei Ke , Yang Feng-Ming , Hu Liu-Qing , Pan Chun-Feng , Pan Xiang-Long , Wu Wei-Bing , Wang Jun , Wen Wei , He Zhi-Cheng , Xu Jing , Xu Xin-Feng , Zhu Quan , Chen Liang 
Published: February 2019

AbstractNon-small cell lung cancer (NSCLC) is one of the most common aggressive malignancies. miRNAs have been identified as important biomarkers and regulators of NSCLC. However, the functional contributions of miR-1260b to NSCLC cell proliferation and apoptosis have not been studied. In this study, miR-1260b was upregulated in NSCLC plasma, tissues, and cell lines, and its high expression was correlated with tumor size and progression. Functionally, miR-1260b overexpression promoted cell proliferation and cell cycle, conversely inhibited cell apoptosis and senescence. Mechanically, miR-1260b negatively regulated SOCS6 by directly binding to its 3′-UTR. Furthermore, miR-1260b-mediated suppression of SOCS6 activated KIT signaling. Moreover, YY1 was an upstream regulator of miR-1260b. This study is the first to illustrate that miR-1260b, mediated by YY1, activates KIT signaling by targeting SOCS6 to regulate NSCLC cell proliferation and apoptosis, and is a potential biomarker and therapeutic target for NSCLC. In sum, our work provides new insights into the molecular mechanisms of NSCLC involved in cell proliferation and apoptosis.
Alveolar type 2 progenitor cells for lung injury repair
Authors: Olajuyin Ayobami Matthew , Zhang Xiaoju , Ji Hong-Long 
Published: February 2019

AbstractAlveolar type 2 progenitor cells (AT2) seem closest to clinical translation, specifying the evidence that AT2 may satisfactorily control the immune response to decrease lung injury by stabilizing host immune-competence and a classic and crucial resource for lung regeneration and repair. AT2 establish potential in benefiting injured lungs. However, significant discrepancies linger in our understanding vis-à-vis the mechanisms for AT2 as a regime for stem cell therapy as well as essential guiding information for clinical trials, including effectiveness in appropriate pre-clinical models, safety, mostly specifications for divergent lung injury patients. These important gaps shall be systematically investigated prior to the vast therapeutic perspective of AT2 cells for pulmonary diseases can be considered. This review focused on AT2 cells homeostasis, pathophysiological changes in the pathogenesis of lung injury, physiological function of AT2 cells, apoptosis of AT2 cells in lung diseases, the role of AT2 cells in repairing processes after lung injury, mechanism of AT2 cells activation promote repairing processes after lung injury, and potential therapy of lung disease by utilizing the AT2 progenitor cells. The advancement remains to causally connect the molecular and cellular alteration of AT2 cells to lung injury and repair. Conclusively, it is identified that AT2 cells can convert into AT1 cells; but, the comprehensive cellular mechanisms involved in this transition are unrevealed. Further investigation is mandatory to determine new strategies to prevent lung injury.
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds
Authors: Guerrero-Juarez Christian F. , Dedhia Priya H. , Jin Suoqin , Ruiz-Vega Rolando , Ma Dennis , Liu Yuchen , Yamaga Kosuke , Shestova Olga , Gay Denise L. , Yang Zaixin , Kessenbrock Kai , Nie Qing , Pear Warren S. , Cotsarelis George , Plikus Maksim V. 
Published: February 2019

AbstractDuring wound healing in adult mouse skin, hair follicles and then adipocytes regenerate. Adipocytes regenerate from myofibroblasts, a specialized contractile wound fibroblast. Here we study wound fibroblast diversity using single-cell RNA-sequencing. On analysis, wound fibroblasts group into twelve clusters. Pseudotime and RNA velocity analyses reveal that some clusters likely represent consecutive differentiation states toward a contractile phenotype, while others appear to represent distinct fibroblast lineages. One subset of fibroblasts expresses hematopoietic markers, suggesting their myeloid origin. We validate this finding using single-cell western blot and single-cell RNA-sequencing on genetically labeled myofibroblasts. Using bone marrow transplantation and Cre recombinase-based lineage tracing experiments, we rule out cell fusion events and confirm that hematopoietic lineage cells give rise to a subset of myofibroblasts and rare regenerated adipocytes. In conclusion, our study reveals that wounding induces a high degree of heterogeneity among fibroblasts and recruits highly plastic myeloid cells that contribute to adipocyte regeneration.
Selection of immunoglobulin elbow region mutations impacts interdomain conformational flexibility in HIV-1 broadly neutralizing antibodies
Authors: Henderson Rory , Watts Brian E. , Ergin Hieu N. , Anasti Kara , Parks Robert , Xia Shi-Mao , Trama Ashley , Liao Hua-Xin , Saunders Kevin O. , Bonsignori Mattia , Wiehe Kevin , Haynes Barton F. , Alam S. Munir 
Published: February 2019

AbstractSomatic mutations within antibody variable and framework regions (FWR) can alter thermostability and structural flexibility, but their impact on functional potency is unclear. Here we study thermostability and use molecular dynamics (MD) simulations to assess the role of FWR mutations during maturation of HIV-1 broadly neutralizing antibodies (bnAbs). The tested bnAbs show lower thermostability than their unmutated ancestor antibodies. FWR mutations in the Fab elbow region are frequently observed in HIV-1 bnAbs and MD simulations show that such FWR mutations alter interdomain flexibility in two HIV-1 bnAbs. In a CD4-binding site lineage, reversion mutations result in a loss of neutralization potency in an early intermediate and affinity-matured bnAb against autologous and heterologous Tier-2 viruses, respectively. Elbow region reversion mutations in a glycan-V3 bnAb modestly reduces potency against an autologous virus isolate. Thus, selection of mutations in the Fab elbow region impacts interdomain conformational flexibility and paratope plasticity during bnAb development.
Trifluoroacetate induced small-grained CsPbBr3 perovskite films result in efficient and stable light-emitting devices
Authors: Wang Haoran , Zhang Xiaoyu , Wu Qianqian , Cao Fan , Yang Dongwen , Shang Yuequn , Ning Zhijun , Zhang Wei , Zheng Weitao , Yan Yanfa , Kershaw Stephen V. , Zhang Lijun , Rogach Andrey L. , Yang Xuyong 
Published: February 2019

AbstractQuantum efficiencies of organic-inorganic hybrid lead halide perovskite light-emitting devices (LEDs) have increased significantly, but poor device operational stability still impedes their further development and application. All-inorganic perovskites show better stability than the hybrid counterparts, but the performance of their respective films used in LEDs is limited by the large perovskite grain sizes, which lowers the radiative recombination probability and results in grain boundary related trap states. We realize smooth and pinhole-free, small-grained inorganic perovskite films with improved photoluminescence quantum yield by introducing trifluoroacetate anions to effectively passivate surface defects and control the crystal growth. As a result, efficient green LEDs based on inorganic perovskite films achieve a high current efficiency of 32.0 cd A−1 corresponding to an external quantum efficiency of 10.5%. More importantly, our all-inorganic perovskite LEDs demonstrate a record operational lifetime, with a half-lifetime of over 250 h at an initial luminance of 100 cd m−2.
Mixing of meteoric and geothermal fluids supports hyperdiverse chemosynthetic hydrothermal communities
Authors: Colman Daniel R. , Lindsay Melody R. , Boyd Eric S. 
Published: February 2019

AbstractLittle is known of how mixing of meteoric and geothermal fluids supports biodiversity in non-photosynthetic ecosystems. Here, we use metagenomic sequencing to investigate a chemosynthetic microbial community in a hot spring (SJ3) of Yellowstone National Park that exhibits geochemistry consistent with mixing of a reduced volcanic gas-influenced end member with an oxidized near-surface meteoric end member. SJ3 hosts an exceptionally diverse community with representatives from ~50% of known higher-order archaeal and bacterial lineages, including several divergent deep-branching lineages. A comparison of functional potential with other available chemosynthetic community metagenomes reveals similarly high diversity and functional potentials (i.e., incorporation of electron donors supplied by volcanic gases) in springs sourced by mixed fluids. Further, numerous closely related SJ3 populations harbor differentiated metabolisms that may function to minimize niche overlap, further increasing endemic diversity. We suggest that dynamic mixing of waters generated by subsurface and near-surface geological processes may play a key role in the generation and maintenance of chemosynthetic biodiversity in hydrothermal and other similar environments.
Conformations and cryo-force spectroscopy of spray-deposited single-strand DNA on gold
Authors: Pawlak Rémy , Vilhena J. G. , Hinaut Antoine , Meier Tobias , Glatzel Thilo , Baratoff Alexis , Gnecco Enrico , Pérez Rubén , Meyer Ernst 
Published: February 2019

AbstractCryo-electron microscopy can determine the structure of biological matter in vitrified liquids. However, structure alone is insufficient to understand the function of native and engineered biomolecules. So far, their mechanical properties have mainly been probed at room temperature using tens of pico-newton forces with a resolution limited by thermal fluctuations. Here we combine force spectroscopy and computer simulations in cryogenic conditions to quantify adhesion and intra-molecular properties of spray-deposited single-strand DNA oligomers on Au(111). Sub-nanometer resolution images reveal folding conformations confirmed by simulations. Lifting shows a decay of the measured stiffness with sharp dips every 0.2–0.3 nm associated with the sequential peeling and detachment of single nucleotides. A stiffness of 30–35 N m−1 per stretched repeat unit is deduced in the nano-newton range. This combined study suggests how to better control cryo-force spectroscopy of adsorbed heterogeneous (bio)polymer and to potentially enable single-base recognition in DNA strands only few nanometers long.
Elastic Alfven waves in elastic turbulence
Authors: Varshney Atul , Steinberg Victor 
Published: February 2019

AbstractSpeed of sound waves in gases and liquids are governed by the compressibility of the medium. There exists another type of non-dispersive wave where the wave speed depends on stress instead of elasticity of the medium. A well-known example is the Alfven wave, which propagates through plasma permeated by a magnetic field with the speed determined by magnetic tension. An elastic analogue of Alfven waves has been predicted in a flow of dilute polymer solution where the elastic stress of the stretching polymers determines the elastic wave speed. Here we present quantitative evidence of elastic Alfven waves in elastic turbulence of a viscoelastic creeping flow between two obstacles in channel flow. The key finding in the experimental proof is a nonlinear dependence of the elastic wave speed cel on the Weissenberg number Wi, which deviates from predictions based on a model of linear polymer elasticity.
Intestinal non-canonical NFκB signaling shapes the local and systemic immune response
Authors: Ramakrishnan Sadeesh K. , Zhang Huabing , Ma Xiaoya , Jung Inkyung , Schwartz Andrew J. , Triner Daniel , Devenport Samantha N. , Das Nupur K. , Xue Xiang , Zeng Melody Y. , Hu Yinling , Mortensen Richard M. , Greenson Joel K , Cascalho Marilia , Wobus Christiane E. , Colacino Justin A. , Nunez Gabriel , Rui Liangyou , Shah Yatrik M. 
Published: February 2019

AbstractMicrofold cells (M-cells) are specialized cells of the intestine that sample luminal microbiota and dietary antigens to educate the immune cells of the intestinal lymphoid follicles. The function of M-cells in systemic inflammatory responses are still unclear. Here we show that epithelial non-canonical NFkB signaling mediated by NFkB-inducing kinase (NIK) is highly active in intestinal lymphoid follicles, and is required for M-cell maintenance. Intestinal NIK signaling modulates M-cell differentiation and elicits both local and systemic IL-17A and IgA production. Importantly, intestinal NIK signaling is active in mouse models of colitis and patients with inflammatory bowel diseases; meanwhile, constitutive NIK signaling increases the susceptibility to inflammatory injury by inducing ectopic M-cell differentiation and a chronic increase of IL-17A. Our work thus defines an important function of non-canonical NFkB and M-cells in immune homeostasis, inflammation and polymicrobial sepsis.
Odd electron wave packets from cycloidal ultrashort laser fields
Authors: Kerbstadt S. , Eickhoff K. , Bayer T. , Wollenhaupt M. 
Published: February 2019

AbstractPolarization-tailored bichromatic femtosecond laser fields with cycloidal polarization profiles have emerged as a powerful tool for coherent control of quantum processes. We present an optical scheme to create and manipulate three-dimensional free electron wave packets with arbitrary rotational symmetry by combining advanced supercontinuum pulse shaping with high resolution photoelectron tomography. Here we use carrier-envelope phase-stable polarization-tailored bichromatic (3ω:4ω) counter- and corotating femtosecond laser pulses to generate 7-fold rotational symmetric and asymmetric photoelectron momentum distributions by multiphoton ionization of sodium atoms. To elucidate the physical mechanisms, we investigate the interplay between the symmetry properties of the driving field and the resulting electron wave packets by varying the optical field parameters. Our results show that the symmetry properties of electron wave packets are not fully determined by the field symmetry, but completely described by multipath quantum interference of states with different angular momenta.
Enhanced North Pacific deep-ocean stratification by stronger intermediate water formation during Heinrich Stadial 1
Authors: Gong X. , Lembke-Jene L. , Lohmann G. , Knorr G. , Tiedemann R. , Zou J. J. , Shi X. F. 
Published: February 2019

AbstractThe deglacial history of CO2 release from the deep North Pacific remains unresolved. This is due to conflicting indications about subarctic Pacific ventilation changes based on various marine proxies, especially for Heinrich Stadial 1 (HS-1) when a rapid atmospheric CO2 rise occurs. Here, we use a complex Earth System Model to investigate the deglacial North Pacific overturning and its control on ocean stratification. Our results show an enhanced intermediate-to-deep ocean stratification coeval with intensified North Pacific Intermediate Water (NPIW) formation during HS-1, compared to the Last Glacial Maximum. The stronger NPIW formation causes lower salinities and higher temperatures at intermediate depths. By lowering NPIW densities, this enlarges vertical density gradient and thus enhances intermediate-to-deep ocean stratification during HS-1. Physically, this process prevents the North Pacific deep waters from a better communication with the upper oceans, thus prolongs the existing isolation of glacial Pacific abyssal carbons during HS-1.
Growth hormone regulates neuroendocrine responses to weight loss via AgRP neurons
Authors: Furigo Isadora C. , Teixeira Pryscila D. S. , de Souza Gabriel O. , Couto Gisele C. L. , Romero Guadalupe García , Perelló Mario , Frazão Renata , Elias Lucila L. , Metzger Martin , List Edward O. , Kopchick John J. , Donato J. 
Published: February 2019

AbstractWeight loss triggers important metabolic responses to conserve energy, especially via the fall in leptin levels. Consequently, weight loss becomes increasingly difficult with weight regain commonly occurring in most dieters. Here we show that central growth hormone (GH) signaling also promotes neuroendocrine adaptations during food deprivation. GH activates agouti-related protein (AgRP) neurons and GH receptor (GHR) ablation in AgRP cells mitigates highly characteristic hypothalamic and metabolic adaptations induced by weight loss. Thus, the capacity of mice carrying an AgRP-specific GHR ablation to save energy during food deprivation is impaired, leading to increased fat loss. Additionally, administration of a clinically available GHR antagonist (pegvisomant) attenuates the fall of whole-body energy expenditure of food-deprived mice, similarly as seen by leptin treatment. Our findings indicate GH as a starvation signal that alerts the brain about energy deficiency, triggering key adaptive responses to conserve limited fuel stores.
Lithium promoted mesoporous manganese oxide catalyzed oxidation of allyl ethers
Authors: Dutta Biswanath , Clarke Ryan , Raman Sumathy , Shaffer Timothy D. , Achola Laura , Nandi Partha , Suib Steven L. 
Published: February 2019

AbstractHerein we report the first example of the catalytic aerobic partial oxidation of allyl ether to its acrylate ester derivative. Many partial oxidations often need an expensive oxidant such as peroxides or other species to drive such reactions. In addition, selective generation of esters using porous catalysts has been elusive. This reaction is catalyzed by a Li ion promoted mesoporous manganese oxide (meso-Mn2O3) under mild conditions with no precious metals, a reusable heterogeneous catalyst, and easy isolation. This process is very attractive for the oxidation of allyl ethers. We report on the catalytic activity, selectivity, and scope of the reaction. In the best cases presented, almost complete conversion of allyl ether with near complete chemo-selectivity towards acrylate ester derivatives is observed. Based on results from controlled experiments, we propose a possible reaction mechanism for the case in which N-hydroxyphthalimide (NHPI) is used in combination with trichloroacetonitrile (CCl3CN).
A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection
Authors: Wright Shane C. , Kozielewicz Paweł , Kowalski-Jahn Maria , Petersen Julian , Bowin Carl-Fredrik , Slodkowicz Greg , Marti-Solano Maria , Rodríguez David , Hot Belma , Okashah Najeah , Strakova Katerina , Valnohova Jana , Babu M. Madan , Lambert Nevin A. , Carlsson Jens , Schulte Gunnar 
Published: February 2019

AbstractClass F receptors are considered valuable therapeutic targets due to their role in human disease, but structural changes accompanying receptor activation remain unexplored. Employing population and cancer genomics data, structural analyses, molecular dynamics simulations, resonance energy transfer-based approaches and mutagenesis, we identify a conserved basic amino acid in TM6 in Class F receptors that acts as a molecular switch to mediate receptor activation. Across all tested Class F receptors (FZD4,5,6,7, SMO), mutation of the molecular switch confers an increased potency of agonists by stabilizing an active conformation as assessed by engineered mini G proteins as conformational sensors. Disruption of the switch abrogates the functional interaction between FZDs and the phosphoprotein Dishevelled, supporting conformational selection as a prerequisite for functional selectivity. Our studies reveal the molecular basis of a common activation mechanism conserved in all Class F receptors, which facilitates assay development and future discovery of Class F receptor-targeting drugs.
Selective electroreduction of carbon dioxide to methanol on copper selenide nanocatalysts
Authors: Yang Dexin , Zhu Qinggong , Chen Chunjun , Liu Huizhen , Liu Zhimin , Zhao Zhijuan , Zhang Xiaoyu , Liu Shoujie , Han Buxing 
Published: February 2019

AbstractProduction of methanol from electrochemical reduction of carbon dioxide is very attractive. However, achieving high Faradaic efficiency with high current density using facile prepared catalysts remains to be a challenge. Herein we report that copper selenide nanocatalysts have outstanding performance for electrochemical reduction of carbon dioxide to methanol, and the current density can be as high as 41.5 mA cm−2 with a Faradaic efficiency of 77.6% at a low overpotential of 285 mV. The copper and selenium in the catalysts cooperate very well for the formation of methanol. The current density is higher than those reported up to date with very high Faradaic efficiency for producing methanol. As far as we know, this is the first work for electrochemical reduction of carbon dioxide using copper selenide as the catalyst.
Functional genomics reveal gene regulatory mechanisms underlying schizophrenia risk
Authors: Huo Yongxia , Li Shiwu , Liu Jiewei , Li Xiaoyan , Luo Xiong-Jian 
Published: February 2019

AbstractGenome-wide association studies (GWASs) have identified over 180 independent schizophrenia risk loci. Nevertheless, how the risk variants in the reported loci confer schizophrenia susceptibility remains largely unknown. Here we systematically investigate the gene regulatory mechanisms underpinning schizophrenia risk through integrating data from functional genomics (including 30 ChIP-Seq experiments) and position weight matrix (PWM). We identify 132 risk single nucleotide polymorphisms (SNPs) that disrupt transcription factor binding and we find that 97 of the 132 TF binding-disrupting SNPs are associated with gene expression in human brain tissues. We validate the regulatory effect of some TF binding-disrupting SNPs with reporter gene assays (9 SNPs) and allele-specific expression analysis (10 SNPs). Our study reveals gene regulatory mechanisms affected by schizophrenia risk SNPs (including widespread disruption of POLR2A and CTCF binding) and identifies target genes for mechanistic studies and drug development. Our results can be accessed and visualized at SZDB database (http://www.szdb.org/).