bluuebunny/crossref_metadata_2025_split huggingface dataset:
Quantifying potentially infectious sharing patterns among people who inject drugs in Baltimore, USA
Authors: Smith M. K. , Graham M. , Latkin C. A. , Mehta S. H. , Cummings D. A. T. 
Published: August 2018

AbstractMixing matrices quantify how people with similar or different characteristics make contact with each other, creating potential for disease transmission. Little empirical data on mixing patterns among persons who inject drugs (PWID) are available to inform models of blood-borne disease such as HIV and hepatitis C virus. Egocentric drug network data provided by PWID in Baltimore, Maryland between 2005 and 2007 were used to characterise drug equipment-sharing patterns according to age, race and gender. Black PWID and PWID who were single (i.e. no stable sexual partner) self-reported larger equipment-sharing networks than their white and non-single counterparts. We also found evidence of assortative mixing according to age, gender and race, though to a slightly lesser degree in the case of gender. Highly assortative mixing according to race and gender highlights the existence of demographically isolated clusters, for whom generalised treatment interventions may have limited benefits unless targeted directly. These findings provide novel insights into mixing patterns of PWID for which little empirical data are available. The age-specific assortativity we observed is also significant in light of its role as a key driver of transmission for other pathogens such as influenza and tuberculosis.
Local outbreak of Streptococcus pneumoniae serotype 12F caused high morbidity and mortality among children and adults
Authors: Ikuse T. , Habuka R. , Wakamatsu Y. , Nakajima T. , Saitoh N. , Yoshida H. , Chang B. , Morita M. , Ohnishi M. , Oishi K. , Saitoh A. 
Published: August 2018

AbstractPneumococcal serotype replacement is an important issue after the introduction of pneumococcal conjugate vaccine (PCV) in children. After the introduction of 13-valent PCV, the incidence of invasive pneumococcal diseases (IPD) caused by Streptococcus pneumoniae serotype 12F (Sp12F) have increased in some countries; however, an outbreak of Sp12F has not reported in the post-13-valent PCV era. We experienced a local outbreak of Sp12F during March through May 2016 in Tsuruoka city, Japan after the introduction of 13-valent PCV in 2013. The IPD patients were two children and seven adults, three of whom died with a rapid disease progress. Although the clear transmission route was not determined, eight of the nine patients (89%) had close contact with children, which suggests that transmitted colonisation of Sp12F among children and adults might be the source of transmission. Continuous monitoring of IPDs, along with the determination of pneumococcal serotypes, is warranted in the post–13-valent PCV era. New IPD control strategies may be needed if this fatal outbreak continues to occur.
Prenatal inflammation and risk for schizophrenia: A role for immune proteins in neurodevelopment
Authors: Allswede Dana M. , Cannon Tyrone D. 
Published: August 2018

AbstractPrenatal inflammation is an established risk factor for schizophrenia. However, the specific inflammatory pathways that mediate this association remain unclear. Potential candidate systems include inflammatory markers produced by microglia, such as cytokines and complement. Accumulating evidence suggests that these markers play a role in typical neurodevelopmental processes, such as synapse formation and interneuron migration. Rodent models demonstrate that altered marker levels during the prenatal period can cause lasting deficits in these systems, leading to cognitive deficits that resemble schizophrenia. This review assesses the potential role of prenatal cytokine and complement elevations on the etiology of schizophrenia. The current neurobiological understanding of the development of schizophrenia is reviewed to identify candidate cellular mechanisms that may be influenced by prenatal inflammation. We discuss the functions that cytokines and complement may play in prenatal neurodevelopment, review evidence that links exposure to these factors with risk for schizophrenia, and consider how these markers may interact with genetic vulnerabilities to influence the neurodevelopment of schizophrenia. We consider how prenatal inflammatory exposure may influence childhood and adolescent developmental risk trajectories for schizophrenia. Finally, we identify areas of further research needed to support the development of anti-inflammatory treatments to prevent the development of schizophrenia in at-risk neonates.
Prenatal stress and models explaining risk for psychopathology revisited: Generic vulnerability and divergent pathways
Authors: Huizink Anja C. , de Rooij Susanne R. 
Published: August 2018

AbstractThe present review revisits three hypothesized models that potentially could explain how prenatal maternal stress influences fetal development, birth outcomes, and subsequent developmental psychopathology. These models were mostly based on animal models, and new evidence for these models from human studies is evaluated. Furthermore, divergent trajectories from prenatal exposure to adversities to offspring affected outcomes are reviewed, including the comparison of studies on prenatal maternal stress with research on maternal substance use and maternal malnutrition during pregnancy. Finally, new directions in research on the mechanism underlying prenatal stress effects on human offspring is summarized. While it is concluded that there is abundant evidence for the negative associations between prenatal maternal stress and offspring behavioral, brain, and psychopathological outcomes in humans, there is no consistent evidence for specific mechanisms or specific outcomes in relation to stress exposure in utero. Rather, principles of multifinality and equifinality best describe the consequences for the offspring, suggesting a generic vulnerability and different pathways from prenatal adversities to developmental psychopathology, which complicates the search for underlying mechanisms. New and promising directions for research are provided to get a better understanding of how prenatal stress gets under the skin to affect fetal development.
Testosterone–cortisol dissociation in children exposed to prenatal maternal stress, and relationship with aggression: Project Ice Storm
Authors: Nguyen Tuong-Vi , Jones Sherri L. , Elgbeili Guillaume , Monnier Patricia , Yu Chunbo , Laplante David P. , King Suzanne 
Published: August 2018

AbstractPrenatal maternal stress (PNMS) has been associated with postnatal behavioral alterations that may be partly explained by interactions between the hypothalamic–pituitary–adrenal (HPA) and hypothalamic–pituitary–gonadal (HPG) axes. Yet it remains unclear whether PNMS leads to enduring HPA–HPG alterations in the offspring, and whether HPA–HPG interactions can impact behavior during development, in particular levels of aggression in childhood. Here we investigated the relationship between a marker for HPG axis function (baseline testosterone) and a marker for HPA axis response (cortisol area under the curve) in 11½-year-olds whose mothers were exposed to the 1998 Quebec ice storm during pregnancy (n= 59 children; 31 boys, 28 girls). We examined (a) whether the degree of objective or subjective PNMS regulates the testosterone–cortisol relationship at age 11½, and (b) whether this testosterone–cortisol relationship is associated with differences in aggressive behavior. We found that, at lower levels of subjective PNMS, baseline testosterone and cortisol reactivity were positively correlated; in contrast, there was no relationship between these hormones at higher levels of subjective PNMS. Cortisol response moderated the relationship between testosterone and aggression. These results support the notion PNMS may explain variance in fetal HPA–HPG interactions, and that these interactions may be associated with aggressive behavior in late childhood.
The Darwinian dynamic of sexual selection that Thorstein Veblen missed and its relevance to institutional economics
Authors: WISMAN JON D. 
Published: August 2018

AbstractThorstein Veblen was a pioneer in recognizing the necessity of grounding social science in Darwinian biology and exploring how evolving institutions channel biological proclivities. He especially focused upon how capitalism's social institutions guided the innate need for social status into conspicuous consumption. But why do humans seek status? Surprisingly, Veblen did not pick up on Darwin's concept of sexual selection and recognize it as the driving force behind behavior intended to favorably impress others. This article adds the Darwinian depth that Veblen missed to his understanding of the biologically driven quest for status and its channeling by social institutions. It then explores the turn of most institutionalists away from Veblen's focus on innate behavioral drives in favor of viewing human behavior as more exclusively determined by social conditions. It concludes with reflections on the implications of sexual selection and biological grounding more generally for a theory of institutional economics.
NOx Lifetime and NOy Partitioning During WINTER
Authors: Kenagy Hannah S. , Sparks Tamara L. , Ebben Carlena J. , Wooldrige Paul J. , Lopez‐Hilfiker Felipe D. , Lee Ben H. , Thornton Joel A. , McDuffie Erin E. , Fibiger Dorothy L. , Brown Steven S. , Montzka Denise D. , Weinheimer Andrew J. , Schroder Jason C. , Campuzano‐Jost Pedro , Day Douglas A. , Jimenez Jose L. , Dibb Jack E. , Campos Teresa , Shah Viral , Jaeglé Lyatt , Cohen Ronald C. 
Published: August 2018

AbstractAlthough urban NOx lifetimes have been examined extensively during summertime conditions, wintertime NOx chemistry has been comparatively less studied. We use measurements of NOx and its oxidation products from the aircraft‐based WINTER (Wintertime INvestigation of Transport, Emissions, and Reactivity) experiment over the northeastern United States during February–March 2015 to describe the NOx lifetime during conditions when days are shorter, actinic flux is reduced, and temperatures are colder. By analyzing regional outflow from the East Coast, we show that NOx is long lived during the winter, with a longer daytime lifetime (29 hr) than nighttime lifetime (6.3 hr). We demonstrate that wintertime NOx emissions have an overall lifetime controlled by the nighttime conversion of NOx to nitric acid (HNO3) via N2O5 heterogeneous chemistry, and we discuss constraints on the rates of NOx conversion to HNO3. Additionally, analysis of the nighttime Ox budget suggests that approximately 15% of O3 is lost overnight through N2O5 production and subsequent reaction with aerosol to form HNO3.
Variation in Hydrogen Isotope Composition Among Salt Marsh Plant Organic Compounds Highlights Biochemical Mechanisms Controlling Biosynthetic Fractionation
Authors: Eley Yvette , White Joseph , Dawson Lorna , Hren Michael , Pedentchouk Nikolai 
Published: August 2018

AbstractHydrogen isotopes of plant‐derived biomarkers can vary by >100‰ at a single location. Isotope fractionation associated with the movement of water in plant leaves cannot account for this variability alone. Biochemical processes therefore must play a fundamental role in controlling hydrogen isotope fractionation during secondary compound biosynthesis. Different biosynthetic pathways utilize discrete hydrogen pools and occur within distinct cell compartments. We analyzed hydrogen isotope compositions of C16 and C18 fatty acids and phytol from seven salt marsh plants and compared these data with (i) leaf water and n‐alkane δ2H, (ii) leaf carbon and nitrogen contents, and (iii) nitrogen isotopes of bulk tissue, to evaluate the relationship between biochemical processes, cellular compartmentalization, and hydrogen isotope fractionation. Interspecies variation in chloroplastic fatty acids and phytol δ2H exceeds leaf water δ2H, indicating that different commitments of metabolites among species at branching points in chloroplast metabolic processes may be important determinants of lipid δ2H values. Dominant osmoregulatory strategies, in particular, show strong correlation with leaf wax n‐alkane δ2H. Species that preferentially produce nitrogenous compounds (dicots/shrubs) as protective solutes have 2H‐enriched n‐alkanes relative to species that produce mainly carbohydrates (monocots). n‐Alkane δ2H values, in combination with δ15N data and elemental (C, N) composition, together provide information about biochemical environmental adaptations exhibited by different higher plant species in response to environmental stresses. Thus, while spatial and temporal integration of biomarkers may produce an isotopic record of ecosystem function, biomarkers from individual plant or microbial remains may hold additional details into biologic function and adaptation to ancient environments.
Contrasting distribution patterns between aquatic and terrestrial Phytophthora species along a climatic gradient are linked to functional traits
Authors: Redondo Miguel A , Boberg Johanna , Stenlid Jan , Oliva Jonàs 
Published: August 2018

Abstract
Diversity of microbial organisms is linked to global climatic gradients. The genus Phytophthora includes both aquatic and terrestrial plant pathogenic species that display a large variation of functional traits. The extent to which the physical environment (water or soil) modulates the interaction of microorganisms with climate is unknown. Here, we explored the main environmental drivers of diversity and functional trait composition of Phytophthora communities. Communities were obtained by a novel metabarcoding setup based on PacBio sequencing of river filtrates in 96 river sites along a geographical gradient. Species were classified as terrestrial or aquatic based on their phylogenetic clade. Overall, terrestrial and aquatic species showed contrasting patterns of diversity. For terrestrial species, precipitation was a stronger driver than temperature, and diversity and functional diversity decreased with decreasing temperature and precipitation. In cold and dry areas, the dominant species formed resistant structures and had a low optimum temperature. By contrast, for aquatic species, temperature and water chemistry were the strongest drivers, and diversity increased with decreasing temperature and precipitation. Within the same area, environmental filtering affected terrestrial species more strongly than aquatic species (20% versus 3% of the studied communities, respectively). Our results highlight the importance of functional traits and the physical environment in which microorganisms develop their life cycle when predicting their distribution under changing climatic conditions. Temperature and rainfall may be buffered differently by water and soil, and thus pose contrasting constrains to microbial assemblies.
Sleep loss causes social withdrawal and loneliness
Authors: Ben Simon Eti , Walker Matthew P. 
Published: August 2018

AbstractLoneliness and social isolation markedly increase mortality risk, and are linked to numerous mental and physical comorbidities, including sleep disruption. But does sleep loss causally trigger loneliness? Here, we demonstrate that a lack of sleep leads to a neural and behavioral phenotype of social withdrawal and loneliness; one that can be perceived by other members of society, and reciprocally, makes those societal members lonelier in return. We propose a model in which sleep loss instigates a propagating, self-reinforcing cycle of social separation and withdrawal.
Sex-associated differences in baseline urinary metabolites of healthy adults
Authors: Fan Sili , Yeon Austin , Shahid Muhammad , Anger Jennifer T. , Eilber Karyn S. , Fiehn Oliver , Kim Jayoung 
Published: August 2018

AbstractThe biological basis for gender variability among disease states is not well established. There have been many prior efforts attempting to identify the unique urine metabolomic profiles associated with specific diseases. However, there has been little advancement in investigating the metabolomic differences associated with gender, which underlies the misconception that risk factors and treatment regimens should be the same for both male and female patients. This present study aimed to identify biologically-meaningful baseline sex-related differences using urine samples provided by healthy female and male participants. To elucidate whether urinary metabolic signatures are globally distinct between healthy males and females, we applied metabolomics profiling of primary metabolism with comprehensive bioinformatics analyses on urine samples from 60 healthy males and females. We found that levels of α-ketoglutarate and 4-hydroxybutyric acid increased 2.3-fold and 4.41-fold in males compared to females, respectively. Furthermore, chemical similarity enrichment analysis revealed that differentially expressed metabolites, such as saturated fatty acids, TCA, and butyrates, were significantly related to the gender effect. These findings indicate that there are baseline sex-related differences in urinary metabolism, which should be considered in biomarker discovery, diagnosis, and treatment of bladder diseases, such as interstitial cystitis.
Decadal erosion of coral assemblages by multiple disturbances in the Palm Islands, central Great Barrier Reef
Authors: Torda Gergely , Sambrook Katie , Cross Peter , Sato Yui , Bourne David G. , Lukoschek Vimoksalehi , Hill Tessa , Torras Jorda Georgina , Moya Aurelie , Willis Bette L. 
Published: August 2018

AbstractIncreases in the frequency of perturbations that drive coral community structure, such as severe thermal anomalies and high intensity storms, highlight the need to understand how coral communities recover following multiple disturbances. We describe the dynamics of cover and assemblage composition of corals on exposed inshore reefs in the Palm Islands, central Great Barrier Reef, over 19 years encapsulating major disturbance events such as the severe bleaching event in 1998 and Cyclone Yasi in 2011, along with other minor storm and heat stress events. Over this time, 47.8% of hard coral cover was lost, with a concomitant shift in coral assemblage composition due to taxon-specific rates of mortality during the disturbances, and asymmetric recovery in the aftermath thereof. High recruitment rates of some broadcast-spawning corals, particularly corymbose Acropora spp., even in the absence of adult colonies, indicate that a strong external larval supply replenished the stocks. Conversely, the time required for recovery of slow-growing coral morphologies and life histories was longer than the recurrence times of major disturbances. With interludes between bleaching and cyclones predicted to decrease, the probability of another severe disturbance event before coral cover and assemblage composition approximates historical levels suggests that reefs will continue to erode.
Forebrain medial septum sustains experimental neuropathic pain
Authors: Ariffin Mohammed Zacky , Ibrahim Khairunisa Mohamad , Lee Andy Thiam-Huat , Lee Rui Zhi , Poon Shou Yu , Thong Hwai Kit , Liu Eugene Hern Choon , Low Chian-Ming , Khanna Sanjay 
Published: August 2018

AbstractThe present study explored the role of the medial septal region (MS) in experimental neuropathic pain. For the first time, we found that the MS sustains nociceptive behaviors in rodent models of neuropathic pain, especially in the chronic constriction injury (CCI) model and the paclitaxel model of chemotherapy-induced neuropathic pain. For example, inactivation of the MS with intraseptal muscimol (2 μg/μl, 0.5 μl), a GABA mimetic, reversed peripheral hypersensitivity (PH) in the CCI model and induced place preference in a conditioned place preference task, a surrogate measure of spontaneous nociception. The effect of intraseptal muscimol on PH was comparable to that seen with microinjection of the local anesthetic, lidocaine, into rostral ventromedial medulla which is implicated in facilitating experimental chronic nociception. Cellular analysis in the CCI model showed that the MS region sustains nociceptive gain with CCI by facilitating basal nociceptive processing and the amplification of stimulus-evoked neural processing. Indeed, consistent with the idea that excitatory transmission through MS facilitates chronic experimental pain, intraseptal microinjection of antagonists acting at AMPA and NMDA glutamate receptors attenuated CCI-induced PH. We propose that the MS is a central monitor of bodily nociception which sustains molecular plasticity triggered by persistent noxious insult.
Computational modelling reveals distinct patterns of cognitive and physical motivation in elite athletes
Authors: Chong Trevor T.-J. , Apps Matthew A. J. , Giehl Kathrin , Hall Stephanie , Clifton Callum H. , Husain Masud 
Published: August 2018

AbstractEffort can be perceived both cognitively and physically, but the computational mechanisms underlying the motivation to invest effort in each domain remain unclear. In particular, it is unknown whether intensive physical training is associated with higher motivation specific to that domain, or whether it is accompanied by corresponding changes in cognitive motivation. Here, we tested a group of elite Oxford University rowers, and compared their behaviour to matched non-athletic controls. We trained participants on two tasks involving cognitive or physical effort. They then decided between a baseline low level of effort for low reward, versus higher levels of effort for higher rewards. Separate choices were made for the cognitive and physical tasks, which allowed us to computationally model motivation in each domain independently. As expected, athletes were willing to exert greater amounts of physical effort than non-athletes. Critically, however, the nature of cognitive effort-based decisions was different between groups, with a concave pattern of effort discounting for athletes but a convex pattern for non-athletes. These data suggest that the greater physical drive in athletes is accompanied by fundamentally different patterns of cognitive effort discounting, and suggests a complex relationship between motivation in the two domains.
Mitochondrial DNA m.3243A > G heteroplasmy affects multiple aging phenotypes and risk of mortality
Authors: Tranah Gregory J. , Katzman Shana M. , Lauterjung Kevin , Yaffe Kristine , Manini Todd M. , Kritchevsky Stephen , Newman Anne B. , Harris Tamara B. , Cummings Steven R. 
Published: August 2018

AbstractMitochondria contain many copies of a circular DNA molecule (mtDNA), which has been observed as a mixture of normal and mutated states known as heteroplasmy. Elevated heteroplasmy at a single mtDNA site, m.3243A > G, leads to neurologic, sensory, movement, metabolic, and cardiopulmonary impairments. We measured leukocyte mtDNA m.3243A > G heteroplasmy in 789 elderly men and women from the bi-racial, population-based Health, Aging, and Body Composition Study to identify associations with age-related functioning and mortality. Mutation burden for the m.3243A > G ranged from 0–19% and elevated heteroplasmy was associated with reduced strength, cognitive, metabolic, and cardiovascular functioning. Risk of all-cause, dementia and stroke mortality was significantly elevated for participants in the highest tertiles of m.3243A > G heteroplasmy. These results indicate that the accumulation of a rare genetic disease mutation, m.3243A > G, manifests as several aging outcomes and that some diseases of aging may be attributed to the accumulation of mtDNA damage.