bluuebunny/crossref_metadata_2025_split huggingface dataset:
P38α/JNK signaling restrains erythropoiesis by suppressing Ezh2-mediated epigenetic silencing of Bim
Authors: Hu Ping , Nebreda Angel R. , Hanenberg Helmut , Kinnebrew Garrett H. , Ivan Mircea , Yoder Mervin C. , Filippi Marie-Dominique , Broxmeyer Hal E. , Kapur Reuben 
Published: August 2018

AbstractWhile erythropoietin (EPO) constitutes the major treatment for anemia, a range of anemic disorders remain resistant to EPO treatment. The need for alternative therapeutic strategies requires the identification of mechanisms that physiologically restrain erythropoiesis. Here we show that P38α restrains erythropoiesis in mouse and human erythroblasts independently of EPO by integrating apoptotic signals during recovery from anemia. P38α deficiency promotes JNK activation through increased expression of Map3k4 via a negative feedback mechanism. JNK prevents Cdk1-mediated phosphorylation and subsequent degradation by Smurf2 of the epigenetic silencer Ezh2. Stabilized Ezh2 silences Bim expression and protects erythroblasts from apoptosis. Thus, we identify P38α/JNK signaling as a molecular brake modulating erythropoiesis through epigenetic silencing of Bim. We propose that inhibition of P38α, by enhancing erythropoiesis in an EPO-independent fashion, may provide an alternative strategy for the treatment of anemia.
A molecular switch orchestrates enzyme specificity and secretory granule morphology
Authors: Ji Suena , Samara Nadine L. , Revoredo Leslie , Zhang Liping , Tran Duy T. , Muirhead Kayla , Tabak Lawrence A. , Ten Hagen Kelly G. 
Published: August 2018

AbstractRegulated secretion is an essential process where molecules destined for export are directed to membranous secretory granules, where they undergo packaging and maturation. Here, we identify a gene (pgant9) that influences the structure and shape of secretory granules within the Drosophila salivary gland. Loss of pgant9, which encodes an O-glycosyltransferase, results in secretory granules with an irregular, shard-like morphology, and altered glycosylation of cargo. Interestingly, pgant9 undergoes a splicing event that acts as a molecular switch to alter the charge of a loop controlling access to the active site of the enzyme. The splice variant with the negatively charged loop glycosylates the positively charged secretory cargo and rescues secretory granule morphology. Our study highlights a mechanism for dictating substrate specificity within the O-glycosyltransferase enzyme family. Moreover, our in vitro and in vivo studies suggest that the glycosylation status of secretory cargo influences the morphology of maturing secretory granules.
The photoregulation of a mechanochemical polymer scission
Authors: Kida Jumpei , Imato Keiichi , Goseki Raita , Aoki Daisuke , Morimoto Masakazu , Otsuka Hideyuki 
Published: August 2018

AbstractControl over mechanochemical polymer scission by another external stimulus may offer an avenue to further advance the fields of polymer chemistry, mechanochemistry, and materials science. Herein, we demonstrate that light can regulate the mechanochemical behavior of a diarylethene-conjugated Diels–Alder adduct (DAE/DA) that reversibly isomerizes from a weaker open form to a stronger closed form under photoirradiation. Pulsed ultrasonication experiments, spectroscopic analyses, and density functional theory calculations support the successful photoregulation of the reactivity of this DAE/DA mechanophore, which is incorporated at the mid-chain of a polymer, and indicate that higher force and energy are required to cleave the closed form of the DAE/DA mechanophore relative to the open form. The present photoregulation concept provides an attractive approach toward the generation of new mechanofunctional polymers.
The dominant role of critical valence fluctuations on high Tc superconductivity in heavy fermions
Authors: Scheerer Gernot W. , Ren Zhi , Watanabe Shinji , Lapertot Gérard , Aoki Dai , Jaccard Didier , Miyake Kazumasa 
Published: August 2018

AbstractDespite almost 40 years of research, the origin of heavy-fermion superconductivity is still strongly debated. Especially, the pressure-induced enhancement of superconductivity in CeCu2Si2 away from the magnetic breakdown is not sufficiently taken into consideration. As recently reported in CeCu2Si2 and several related compounds, optimal superconductivity occurs at the pressure of a valence crossover, which arises from a virtual critical end point at negative temperature Tcr. In this context, we did a meticulous analysis of a vast set of top-quality high-pressure electrical resistivity data of several Ce-based heavy fermion compounds. The key novelty is the salient correlation between the superconducting transition temperature Tc and the valence instability parameter Tcr, which is in line with theory of enhanced valence fluctuations. Moreover, it is found that, in the pressure region of superconductivity, electrical resistivity is governed by the valence crossover, which most often manifests in scaling behavior. We develop the new idea that the optimum superconducting Tc of a given sample is mainly controlled by the compound’s Tcr and limited by non-magnetic disorder. In this regard, the present study provides compelling evidence for the crucial role of critical valence fluctuations in the formation of Cooper pairs in Ce-based heavy fermion superconductors besides the contribution of spin fluctuations near magnetic quantum critical points, and corroborates a plausible superconducting mechanism in strongly correlated electron systems in general.
Adaptation reveals sensory and decision components in the visual estimation of locomotion speed
Authors: Mather George , Parsons Todd 
Published: August 2018

AbstractLocomotion speed provides important social information about an individual’s fitness, mood and intent. Visual estimation of locomotion speed is a complex task for the visual system because viewing distance must be taken into account, and the estimate has to be calibrated by recent experience of typical speeds. Little is known about how locomotion speed judgements are made. Previous research indicates that the human visual system possesses neurons that respond specifically to moving human forms. This research used point-light walker (PLW) displays that are known to activate these cells, in order to investigate the process mediating locomotion speed judgements. The results of three adaptation experiments show that these judgements involve both a low-level sensory component and a high-level decision component. A simple theoretical scheme is proposed, in which neurons sensitive to image flicker rate (temporal frequency) provide a sensory speed code, and a benchmark ‘norm’ value of the speed code, based on prevailing locomotion speeds, is used to make decisions about objective speed. The output of a simple computational model of the scheme successfully captured variations in locomotion speed in the stimuli used in the experiments. The theory offers a biologically-motivated account of how locomotion speed can be visually estimated.
Gas exchange mechanisms in preterm infants on HFOV – a computational approach
Authors: Roth Christian J. , Förster Kai M. , Hilgendorff Anne , Ertl-Wagner Birgit , Wall Wolfgang A. , Flemmer Andreas W. 
Published: August 2018

AbstractHigh-frequency oscillatory ventilation (HFOV) is a commonly used therapy applied to neonates requiring ventilatory support during their first weeks of life. Despite its wide application, the underlying gas exchange mechanisms promoting the success of HVOF in neonatal care are not fully understood until today. In this work, a highly resolved computational lung model, derived from Magnetic Resonance Imaging (MRI) and Infant Lung Function Testing (ILFT), is used to reveal the reason for highly efficient gas exchange during HFOV, in the preterm infant. In total we detected six mechanisms that facilitate gas exchange during HFOV: (i) turbulent vortices in large airways; (ii) asymmetric in- and expiratory flow profiles; (iii) radial mixing in main bronchi; (iv) laminar flow in higher generations of the respiratory tract; (v) pendelluft; (vi) direct ventilation of central alveoli. The illustration of six specific gas transport phenomena during HFOV in preterm infants advances general knowledge on protective ventilation in neonatal care and can support decisions on various modes of ventilatory therapy at high frequencies.
Local probe for connectivity and coupling strength in quantum complex networks
Authors: Nokkala Johannes , Maniscalco Sabrina , Piilo Jyrki 
Published: August 2018

AbstractWe develop a local probe to estimate the connectivity of complex quantum networks. Our results show how global properties of different classes of complex networks can be estimated – in quantitative manner with high accuracy – by coupling a probe to a single node of the network. Here, our interest is focused on probing the connectivity, i.e. the degree sequence, and the value of the coupling constant within the complex network. The scheme combines results on classical graph theory with the ability to develop quantum probes for networks of quantum harmonic oscillators. Whilst our results are proof-of-principle type, within the emerging field of quantum complex networks they may have potential applications for example to the efficient transfer of quantum information or energy or possibly to shed light on the connection between network structure and dynamics.
Precipitous change of the irreversible strain limit with heat-treatment temperature in Nb3Sn wires made by the restacked-rod process
Authors: Cheggour Najib , Stauffer Theodore C. , Starch William , Lee Peter J. , Splett Jolene D. , Goodrich Loren F. , Ghosh Arup K. 
Published: August 2018

AbstractThe intrinsic irreversible strain limit εirr,0 of Nb3Sn superconducting wires, made by the restacked-rod process and doped with either Ti or Ta, undergoes a precipitous change as a function of temperature θ of the final heat-treatment for forming the A15 phase. Nb3Sn transitions from a highly brittle state where it cracks as soon as it is subjected to an axial tensile strain of any measurable amount, to a state more resilient to tensile strain as high as 0.4%. The remarkable abruptness of this transition (as most of it occurs over a range of only 10 °C) could pose real challenges for the heat-treatment of large magnets, such as those fabricated for the high-luminosity upgrade of the Large Hadron Collider (LHC). We named this behavior the strain irreversibility cliff (SIC) to caution magnet developers. The approach to fulfilling application requirements just in terms of the conductor’s residual resistivity ratio RRR and critical-current density Jc is incomplete. Along with RRR and Jc wire specifications, and sub-element size requirements that reduce wire magnetization and instabilities effects, SIC imposes additional constraints on the choice of heat-treatment conditions to ensure mechanical integrity of the conductor.
A Sensitive Thresholding Method for Confocal Laser Scanning Microscope Image Stacks of Microbial Biofilms
Authors: Luo Ting L. , Eisenberg Marisa C. , Hayashi Michael A. L. , Gonzalez-Cabezas Carlos , Foxman Betsy , Marrs Carl F. , Rickard Alexander H. 
Published: August 2018

AbstractBiofilms are surface-attached microbial communities whose architecture can be captured with confocal microscopy. Manual or automatic thresholding of acquired images is often needed to help distinguish biofilm biomass from background noise. However, manual thresholding is subjective and current automatic thresholding methods can lead to loss of meaningful data. Here, we describe an automatic thresholding method designed for confocal fluorescent signal, termed the biovolume elasticity method (BEM). We evaluated BEM using confocal image stacks of oral biofilms grown in pooled human saliva. Image stacks were thresholded manually and automatically with three different methods; Otsu, iterative selection (IS), and BEM. Effects on biovolume, surface area, and number of objects detected indicated that the BEM was the least aggressive at removing signal, and provided the greatest visual and quantitative acuity of single cells. Thus, thresholding with BEM offers a sensitive, automatic, and tunable method to maintain biofilm architectural properties for subsequent analysis.
Effects of Compositional Tailoring on Drug Delivery Behaviours of Silica Xerogel/Polymer Core-shell Composite Nanoparticles
Authors: Huang Wenfei , Tsui Chi Pong , Tang Chak Yin , Gu Linxia 
Published: August 2018

AbstractConventional core-shell polymer nanoparticles usually exhibit a rapid release rate with their release kinetics mainly adjusted through changing composition of the polymer shells, limiting their applications for prolonged drug delivery. As a solution to these problems, silica xerogel/polymer core-shell-structured composite nanoparticles have been proposed. Different with our previous work centring on studying process variables, we here focused on investigating the effects of key compositional variables on essential properties of the composite nanoparticles. The drug release profiles (in vitro) were well interpreted by the Baker and Lonsdale model on a predicted two-stage basis. The first stage (<1 day) was well controlled from 18.6% to 45.9%; the second stage (1–14 days) was tailored in a range from 28.7 to 58.2% by changing the composition of the silica xerogel cores and polymeric shells. A substantial achievement was reducing the release rate by more than 40 times compared with that of conventional polymer nanoparticles by virtue of the silica xerogel cores. A semi-empirical model was also established in the first attempt to describe the effects of polymer concentration and drug loading capacity on the size of the composite nanoparticles. All these results indicated that the composite nanoparticles are promising candidates for prolonged drug delivery applications.
Rab GTPase regulation of bacteria and protozoa phagocytosis occurs through the modulation of phagocytic receptor surface expression
Authors: Seixas Elsa , Escrevente Cristina , Seabra Miguel C. , Barral Duarte C. 
Published: August 2018

AbstractPhagocytosis of invading microorganisms by professional phagocytic cells has a central role in innate immunity. However, several microorganisms developed strategies to subvert this process. Previously, we reported that bacteria and protozoa modulate differently the expression of Rab GTPases. Moreover, our results suggested that this modulation can contribute to avoid phagocytosis. Here, we investigated the mechanism by which the malaria parasite Plasmodium berghei and the bacterium Escherichia coli subvert phagocytosis through the modulation of Rab14 or Rab9a expression, respectively. We first confirmed that the scavenger receptor CD36 and the Toll-like receptor (TLR) 4 are required for the phagocytosis of P. berghei and E. coli, respectively. Interestingly, we observed that Rab14 silencing leads to an increase in the surface expression of CD36 in macrophages, which can explain the increase in the phagocytosis of P. berghei we reported previously. Similar results were obtained for Rab9a and TLR4, i.e. Rab9a silencing causes an upregulation of TLR4 surface expression in macrophages. Furthermore, we found that the decrease in the internalization of CD36 and TLR4, upon Rab14 or Rab9a silencing, respectively, can explain the increase in the surface levels of these receptors. Thus, our studies provide evidence that the modulation of phagocytosis caused by changes in Rab expression is operated, at least partly through changes in the surface levels of phagocytic receptors.
Weighted Stochastic Block Models of the Human Connectome across the Life Span
Authors: Faskowitz Joshua , Yan Xiaoran , Zuo Xi-Nian , Sporns Olaf 
Published: August 2018

AbstractThe human brain can be described as a complex network of anatomical connections between distinct areas, referred to as the human connectome. Fundamental characteristics of connectome organization can be revealed using the tools of network science and graph theory. Of particular interest is the network’s community structure, commonly identified by modularity maximization, where communities are conceptualized as densely intra-connected and sparsely inter-connected. Here we adopt a generative modeling approach called weighted stochastic block models (WSBM) that can describe a wider range of community structure topologies by explicitly considering patterned interactions between communities. We apply this method to the study of changes in the human connectome that occur across the life span (between 6–85 years old). We find that WSBM communities exhibit greater hemispheric symmetry and are spatially less compact than those derived from modularity maximization. We identify several network blocks that exhibit significant linear and non-linear changes across age, with the most significant changes involving subregions of prefrontal cortex. Overall, we show that the WSBM generative modeling approach can be an effective tool for describing types of community structure in brain networks that go beyond modularity.
Regional disparities in warm season rainfall changes over arid eastern–central Asia
Authors: Dong Wenhao , Lin Yanluan , Wright Jonathon S. , Xie Yuanyu , Ming Yi , Zhang Han , Chen Rensheng , Chen Yaning , Xu Fanghua , Lin Namei , Yu Chaoqing , Zhang Bin , Jin Shuang , Yang Kun , Li Zhongqin , Guo Jianping , Wang Lei , Lin Guanghui 
Published: August 2018

AbstractMultiple studies have reported a shift in the trend of warm season rainfall over arid eastern–central Asia (AECA) around the turn of the new century, from increasing over the second half of the twentieth century to decreasing during the early years of the twenty-first. Here, a closer look based on multiple precipitation datasets reveals important regional disparities in these changes. Warm-season rainfall increased over both basin areas and mountain ranges during 1961–1998 due to enhanced moisture flux convergence associated with changes in the large-scale circulation and increases in atmospheric moisture content. Despite a significant decrease in warm-season precipitation over the high mountain ranges after the year 1998, warm season rainfall has remained large over low-lying basin areas. This discrepancy, which is also reflected in changes in river flow, soil moisture, and vegetation, primarily results from disparate responses to enhanced warming in the mountain and basin areas of AECA. In addition to changes in the prevailing circulation and moisture transport patterns, the decrease in precipitation over the mountains has occurred mainly because increases in local water vapor saturation capacity (which scales with temperature) have outpaced the available moisture supply, reducing relative humidity and suppressing precipitation. By contrast, rainfall over basin areas has been maintained by accelerated moisture recycling driven by rapid glacier retreat, snow melt, and irrigation expansion. This trend is unsustainable and is likely to reverse as these cryospheric buffers disappear, with potentially catastrophic implications for local agriculture and ecology.
Stress response of Escherichia coli to essential oil components – insights on low-molecular-weight proteins from MALDI-TOF
Authors: Božik Matěj , Cejnar Pavel , Šašková Martina , Nový Pavel , Maršík Petr , Klouček Pavel 
Published: August 2018

AbstractThe antibacterial effects of essential oils and their components (EOCs) are usually attributed to effects on membranes and metabolism. Studies of the effects of EOCs on protein expression have primarily analysed proteins larger than 10 kDa using gel electrophoresis. In the present study, we used MALDI-TOF-MS to investigate the effects of EOCs on low-molecular-weight proteins. From 297 m/z features, we identified 94 proteins with important differences in expression among untreated samples, samples treated with EOCs, and samples treated with antibiotics, peroxide, or chlorine. The targets of these treatments obviously differ, even among EOCs. In addition to ribosomal proteins, stress-, membrane- and biofilm-related proteins were affected. These findings may provide a basis for identifying new targets of essential oils and synergies with other antibiotics.
Differentiation and comparison of Wolfiporia cocos raw materials based on multi-spectral information fusion and chemometric methods
Authors: Li Yan , Wang Yuanzhong 
Published: August 2018

AbstractIn order to achieve the target of deeper insight into the differentiation and comparison of Wolfiporia cocos, a total of 350 samples including distinct growth patterns, various collection regions and different medicinal parts were investigated using multi-spectral information fusion based on ultraviolet (UV) and Fourier transform infrared (FT-IR) spectroscopies coupled with chemometrics. From the results, the discrimination of samples was obtained successfully and good classification performances were shown according to partial least squares discriminant analysis (PLS-DA) models. Comparatively, the distinctness of chemical information in the two medicinal parts of W. cocos were much more than that in the same part with different growth patterns and collection areas. Meanwhile, an interesting finding suggested that growth patterns rather than geographical origins could be the dominant factor to effect the chemical properties of the same part samples, especially for the epidermis. Compared with the epidermis samples, there were better quality consistency for the inner part of W. cocos. Totally, this study demonstrated that the developed method proved to be reliable to perform comparative analysis of W. cocos. Moreover, it could provide more comprehensive chemical evidence for the critical supplement of quality assessment on the raw materials of W. cocos.
Seroprevalence of Maternal and Cord Antibodies Specific for Diphtheria, Tetanus, Pertussis, Measles, Mumps and Rubella in Shunyi, Beijing
Authors: Meng Qing-hong , Liu Ying , Yu Jin-qian , Li Li-jun , Shi Wei , Shen Ying-jie , Li Li , Zhan Shi-na , Yang Fan , Wang Ya-juan , Yao Kai-hu 
Published: August 2018

AbstractMaternal antibodies contribute to the protection of young infants from infectious diseases during the early life. However, vaccinations for women of child-bearing age are not routine in China. Therefore, we investigated the level of protective immunity against vaccine preventable diseases in pregnant women and newborns in China. A total of 194 paired maternal and cord blood samples were collected in Beijing from 2016 to 2017. Antibodies specific for the antigens covered by diphtheria-tetanus-pertussis (DTP) and measles-mumps-rubella (MMR) vaccine were determined by ELISA (Euroimmun, Lübeck, Germany). The cut off value of ≥0.1 IU/ml (anti-diphtheria), >0.1 IU/ml (anti-tetanus), >40 IU/ml (anti-pertussis toxin), ≥200 IU/l (anti-measles), ≥45 RU/ml (anti-mumps) and ≥10 IU/ml (anti-rubella) were used to assess the percentage of newborns with protective IgG concentrations, respectively. The results revealed that 61.3%, 73.2%, 97.4%, 30.4%, 65.5% and 17.0% of newborns had no protection against diphtheria, tetanus, pertussis, measles, mumps and rubella. Only 1.0% and 23.7% of newborns had protection against all three components of DTP or MMR, respectively. The finding suggested that most of newborns were susceptible to diphtheria, tetanus, pertussis and mumps, almost one-third of this population had no immune protection against measles, and about one-sixth of them were under threat of rubella infection. These data supported the immunization program for DTP and MMR vaccine in women at child-bearing age.