bluuebunny/crossref_metadata_2025_split huggingface dataset:
Bedaquiline and delamanid in the treatment of multidrug‐resistant tuberculosis: Promising but challenging
Authors: Li Yang , Sun Feng , Zhang Wenhong 
Published: December 2018

AbstractImproving treatment outcomes in multidrug‐resistant tuberculosis (MDR‐TB) is partly hampered by inadequate effective antitubercular agents. Development of bedaquiline and delamanid has potentially changed the treatment landscape for MDR‐TB. This review provides an update on the progress of these novel antitubercular agents. We review published studies aimed at evaluating clinical efficacy and effectiveness of bedaquiline and delamanid. Five prospective clinical studies and seven retrospective studies on bedaquiline showed that patients treated with a bedaquiline‐containing regimen had a high culture conversion rate ranging from 65 to 100% and a satisfactory treatment outcome. The combined use with linezolid might add to the effectiveness of bedaquiline. Controversies about bedaquiline resistance are discussed. Three clinical trials have reported outcomes on delamanid and showed that introducing delamanid to a background regimen improved culture conversion rate at 2 months from 29.6% to more than 40%. A higher favorable treatment rate was also observed among patients who received delamanid for more than 6 months, but about a quarter of patients defaulted in the control group. Seven retrospective studies were summarized and found a treatment benefit as well. More reliable evidence from randomized clinical trials reporting on the treatment outcomes is needed urgently to support a strong recommendation for the use of delamanid. Advances in the combined use of bedaquiline and delamanid are also reviewed, and the combination may be well tolerated but requires electrocardiograph monitoring.
Role of BMP Signaling for the Formation of Auditory Brainstem Nuclei and Large Auditory Relay Synapses
Authors: Kronander Elin , Clark Christopher , Schneggenburger Ralf 
Published: December 2018

AbstractLarge excitatory synapses are found at specific points in the neuronal circuits of the auditory brainstem, to enable fast information transfer and the preservation of acoustic timing information. The extracellular cues and signaling mechanisms that lead to the development of these specialized synaptic connections, exemplified by the calyx of Held in the medial nucleus of the trapezoid body (MNTB), are still largely unknown. Here, we investigate the role of BMP signaling for the early development of the ventral cochlear nucleus (VCN) and MNTB, and for the initial formation of the calyx of Held synaptic connection. We used conditional alleles of two BMP type‐1 receptors in the background of a constitutive BMPR1b knock‐out (KO), or else a conditional allele of SMAD4. The conditional alleles were recombined by the Krox20Cre mouse line that is active around mid‐gestation in rhombomeres (r) 3 and 5 from which the VCN and MNTB are derived; alternatively, virus‐mediated Cre‐expression was performed early postnatally in the VCN. The data show that embryonic SMAD‐dependent BMP‐signaling in r3 and r5 contributes to the histogenesis of auditory brainstem nuclei. On the other hand, BMP‐receptor signaling early postnatally in presynaptic neurons of the calyx of Held projection is necessary for correct axon branch retraction, which suggests a cell‐autonomous role of presynaptic BMP‐receptors in synapse elimination at the developing calyx of Held. Thus, our work dissects developmentally early and late roles of BMP‐signaling for the formation of auditory brainstem nuclei, and the highly specialized synaptic connectivity in these structures.
Making sense of intralocus and interlocus sexual conflict
Authors: Schenkel Martijn A. , Pen Ido , Beukeboom Leo W. , Billeter Jean‐Christophe 
Published: December 2018

AbstractSexual conflict occurs because males and females are exposed to different selection pressures. This can affect many aspects of female and male biology, such as physiology, behavior, genetics, and even population ecology. Its broad impact has caused widespread interest in sexual conflict. However, a key aspect of sexual conflict is often confused; it comprises two distinct forms: intralocus and interlocus sexual conflict (IASC and IRSC). Although both are caused by sex differences in selection, they operate via different proximate and ultimate mechanisms. Intralocus sexual conflict and IRSC are often not clearly defined as separate processes in the scientific literature, which impedes a proper understanding of each form as well as of their relative impact on sexual conflict. Furthermore, our current knowledge of the genetics of these phenomena is severely limited. This prevents us from empirically testing numerous theories regarding the role of these two forms of sexual conflict in evolution. Here, we clarify the distinction between IASC and IRSC, by discussing how male and female interests differ, how and when sex‐specific adaptation occurs, and how this may lead to evolutionary change. We then describe a framework for their study, focusing on how future experiments may help identify the genetics underlying these phenomena. Through this, we hope to promote a more critical reflection on IASC and IRSC as well as underline the necessity of genetic and mechanistic studies of these two phenomena.
Testing the predictive capabilities of ecological niche models: a case study examining Red‐bellied Woodpeckers
Authors: FitzGerald Alyssa M. , Starkloff Naima C. , Kirchman Jeremy J. 
Published: December 2018

AbstractAs humans continue to alter natural habitats indirectly and directly, species’ geographic ranges may change as they track shifting climate regimes or changing landscapes. Ecological niche models (ENMs) are frequently used to show modern ranges and forecast future range changes. These models, however, assume that a species will exhibit niche conservatism, though this is rarely tested. Here, we examine a woodpecker species with a well‐documented recent range expansion to assess the effectiveness of predictive models by comparing the pre‐ and post‐expansion climate/habitat niche using ENMs and multivariate principal components analysis. Occurrence data for the Red‐bellied Woodpecker (Melanerpes carolinus) were obtained from the pre‐expansion (1910–1939; n = 299) and post‐expansion (1980–2009; n = 868) time periods. Ecological niche models were constructed using GIS layers describing climate data and crop cover for the pre‐ and post‐expansion time periods. We then used the pre‐expansion ENM to forecast the distribution of Red‐bellied Woodpeckers into the post‐expansion time period, and vice versa, and calculated the niche overlap of the projected distributions and the actual distributions in those time periods to determine whether pre‐ and post‐expansion niches were similar. Predictive ENMs did not closely match the actual distributions in the pre‐ and post‐expansion time periods, respectively, and the pre‐expansion and post‐expansion niches were significantly different from each other (Schoener's D = 0.745, P < 0.001). Multivariate analyses revealed that the present‐day niche encompasses the past niche and that Red‐bellied Woodpeckers today have broader temperature and precipitation tolerances and are found in both more‐ and less‐forested areas than they were in the pre‐expansion era. Our analyses reveal that Red‐bellied Woodpeckers are not exhibiting climate or habitat niche conservatism, explaining why predictive ENMs for this species could not effectively track their range shift. This study emphasizes that predictive models may not be effective for species undergoing niche changes.
Patterns of mercury and selenium exposure in minnesota common loons
Authors: Kenow Kevin P. , Houdek Steven C. , Fara Luke J. , Erickson Richard A. , Gray Brian R. , Harrison Travis J. , Monson Bruce A. , Henderson Carrol L. 
Published: December 2018

Abstract

Common loons (Gavia immer) are at risk of elevated dietary mercury (Hg) exposure in portions of their breeding range. To assess the level of risk among loons in Minnesota (USA), we investigated loon blood Hg concentrations in breeding lakes across Minnesota. Loon blood Hg concentrations were regressed on predicted Hg concentrations in standardized 12-cm whole-organism yellow perch (Perca flavescens), based on fish Hg records from Minnesota lakes, using the US Geological Survey National Descriptive Model for Mercury in Fish. A linear model, incorporating common loon sex, age, body mass, and log-transformed standardized perch Hg concentration representative of each study lake, was associated with 83% of the variability in observed common loon blood Hg concentrations. Loon blood Hg concentration was positively related to standardized perch Hg concentrations; juvenile loons had lower blood Hg concentrations than adult females, and blood Hg concentrations of juveniles increased with body mass. Blood Hg concentrations of all adult common loons and associated standardized prey Hg for all loon capture lakes included in the study were well below proposed thresholds for adverse effects on loon behavior, physiology, survival, and reproductive success. The fish Hg modeling approach provided insights into spatial patterns of dietary Hg exposure risk to common loons across Minnesota. We also determined that loon blood selenium (Se) concentrations were positively correlated with Hg concentration. Average common loon blood Se concentrations exceeded the published provisional threshold. Environ Toxicol Chem 2019;38:524–532. Published 2018 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.
Physiological responses of Chlorella sorokiniana to copper nanoparticles
Authors: Barreto Daniela Mariano , Tonietto Alessandra Emanuele , Amaral Clarice Dias Britto , Pulgrossi Rafael Catoia , Polpo Adriano , Nóbrega Joaquim Araújo , Lombardi Ana Teresa 
Published: December 2018

Abstract

Copper (Cu) nanomaterials have been increasingly researched and produced for many different consumer products. They have high reactivity and bactericidal properties, making them important in antifouling paints, which are thus directly introduced into aquatic ecosystems. However, studies are scarce on the behavior of Cu nanoparticles (Cu-NPs) in natural aquatic systems and their interactions with primary producers such as microalgae. We investigated the effects of NPs on some physiological responses of the freshwater phytoplankton Chlorella sorokiniana. The cells were exposed to nominal concentrations ranging from 2.50 to 635.00 μg L−1 Cu-NPs for 96 h under laboratory-controlled conditions. The cultures were monitored daily for population growth and maximum photosynthetic quantum yield. Total lipids, proteins, and carbohydrates were quantified at 72 h of Cu-NP exposure. The results showed a positive correlation between nominal Cu-NPs and Cu in the biomass (0.97 correlation coefficient) and that this was inversely proportional to total carbohydrates, with a –0.64 correlation coefficient. At the higher end of the Cu-NP concentrations tested, higher total proteins and reduced growth rates were obtained in comparison with controls; we suggest that metal-binding proteins/antioxidants and nonstructural proteins were preferentially produced under these conditions. Our results contribute to an understanding of the interaction between Cu-NPs and a cosmopolitan phytoplankton, C. sorokiniana, and we emphasize that the disposal and use of Cu-NPs requires monitoring because even at environmentally relevant concentrations, the composition of the algae was affected. Environ Toxicol Chem 2019;38:387–395. © 2018 SETAC
Environmental conditions affecting re-release from particulate matter of 4-Nonylphenol into an aqueous medium
Authors: Lyons Rebecca , Togashi Trevor , Bowyer Chad 
Published: December 2018

Abstract

4-nonylphenol is a persistent organic pollutant with endocrine-disrupting properties. A nonpolar product of microbial degradation derived from the surfactant nonylphenol polyethoxylate, 4-nonylphenol is capable of long-range transport attached to particulates. Bioactive concentrations of 4-nonylphenol have been found in the surface water, soils, snow, and particulate matter of the Eastern Sierra Nevada Mountains (USA) hundreds of miles from their origins. As a result of particulate deposition, seasonal and glacial snow pack concentrations measured 20 to 100 times higher than in surface waters. Batch desorption assays were run on particulate matter dosed with 4-nonylphenol. Desorption was measured in 63 to 500 μm particles under 2 different temperature conditions with varying fractions of organic carbon in turbulent or undisturbed states. Lower temperatures (4 °C) decreased the mean percentage of 4-nonylphenol released from particulates in disturbed and undisturbed conditions, whereas the mean percentage of 4-nonylphenol released at 20 °C was reduced by agitation. The effect of agitation at 4 °C was not practically or statistically significant. Particulates with a higher percentage of organic carbon (75%) released very little of the bound 4-nonylphenol (0.53%) compared with particulates containing 4 to 5% of organic carbon that released up to 13%. Larger particles released the least amount of 4-nonylphenol, whereas smaller particles released the most amount. Water and sediment samples taken from below the Palisades Glacier in the Sierra Nevada Mountains showed the greatest 4-nonylphenol concentrations directly below the glacier, implying that glacial particulates will release adsorbed 4-nonylphenol. Environ Toxicol Chem 2019;38:350–360. © 2018 SETAC
TREM2 triggers microglial density and age‐related neuronal loss
Authors: Linnartz‐Gerlach Bettina , Bodea Liviu‐Gabriel , Klaus Christine , Ginolhac Aurélien , Halder Rashi , Sinkkonen Lasse , Walter Jochen , Colonna Marco , Neumann Harald 
Published: December 2018

AbstractThe microglial triggering receptor expressed on myeloid cells 2 (TREM2) signals via the activatory membrane adaptor molecule TYROBP. Genetic variants or mutations of TREM2 or TYROBP have been linked to inflammatory neurodegenerative diseases associated with aging. The typical aging process goes along with microglial changes and mild neuronal loss, but the exact contribution of TREM2 is still unclear. Aged TREM2 knock‐out mice showed decreased age‐related neuronal loss in the substantia nigra and the hippocampus. Transcriptomic analysis of the brains of 24 months old TREM2 knock‐out mice revealed 211 differentially expressed genes mostly downregulated and associated with complement activation and oxidative stress response pathways. Consistently, 24 months old TREM2 knock‐out mice showed lower transcription of microglial (Aif1 and Tmem119), oxidative stress markers (Inos, Cyba, and Cybb) and complement components (C1qa, C1qb, C1qc, C3, C4b, Itgam, and Itgb2), decreased microglial numbers and expression of the microglial activation marker Cd68, as well as accumulation of oxidized lipids. Cultured microglia of TREM2 knock‐out mice showed reduced phagocytosis and oxidative burst. Thus, microglial TREM2 contributes to age‐related microglial changes, phagocytic oxidative burst, and loss of neurons with possible detrimental effects during physiological aging.
Hydrologic functioning of the deep critical zone and contributions to streamflow in a high‐elevation catchment: Testing of multiple conceptual models
Authors: Dwivedi Ravindra , Meixner Thomas , McIntosh Jennifer C. , Ferré P.A. Ty , Eastoe Christopher J. , Niu Guo‐Yue , Minor Rebecca L. , Barron‐Gafford Greg A. , Chorover Jon 
Published: December 2018

AbstractHigh‐elevation mountain catchments are often subject to large climatic and topographic gradients. Therefore, high‐density hydrogeochemical observations are needed to understand water sources to streamflow and the temporal and spatial behaviour of flow paths. These sources and flow paths vary seasonally, which dictates short‐term storage and the flux of water in the critical zone (CZ) and affect long‐term CZ evolution. This study utilizes multiyear observations of chemical compositions and water residence times from the Santa Catalina Mountains Critical Zone Observatory, Tucson, Arizona to develop and evaluate competing conceptual models of seasonal streamflow generation. These models were tested using endmember mixing analysis, baseflow recession analysis, and tritium model “ages” of various catchment water sources. A conceptual model involving four endmembers (precipitation, soil water, shallow, and deep groundwater) provided the best match to observations. On average, precipitation contributes 39–69% (55 ± 16%), soil water contributes 25–56% (41 ± 16%), shallow groundwater contributes 1–5% (3 ± 2%), and deep groundwater contributes ~0–3% (1 ± 1%) towards annual streamflow. The mixing space comprised two principal planes formed by (a) precipitation‐soil water‐deep groundwater (dry and summer monsoon season samples) and (b) precipitation‐soil water‐shallow groundwater (winter season samples). Groundwater contribution was most important during the wet winter season. During periods of high dynamic groundwater storage and increased hydrologic connectivity (i.e., spring snowmelt), stream water was more geochemically heterogeneous, that is, geochemical heterogeneity of stream water is storage‐dependent. Endmember mixing analysis and 3H model age results indicate that only 1.4 ± 0.3% of the long‐term annual precipitation becomes deep CZ groundwater flux that influences long‐term deep CZ development through both intercatchment and intracatchment deep groundwater flows.
Children's psychological adjustment in dual‐ and single‐ethnic families: Coregulation, socialization values, and emotion regulation in a 7‐year follow‐up study
Authors: Lundén Maija , Punamäki Raija‐Leena , Silvén Maarit 
Published: December 2018

AbstractThe study examines how dual‐ethnic and single‐ethnic families differ in terms of children's psychological adjustment and its correlates. Among 48 Finnish–Russian and Finnish families, mothers and fathers reported on children's emotional and conduct problems at ages 4 years and 7 years and children's emotion regulation, emotionality, and their own socialization values at 7 years. Mother–infant and father–infant coregulation was assessed at 7 months. The results show that children had more emotional problems among Finnish–Russian families than among Finnish families at 4 years but not at 7 years. Russian mothers reported more hierarchical and authoritarian values than did Finnish mothers, but the values did not moderate between ethnic context and children's adjustment. Equally many Finnish and Finnish–Russian families had balanced early coregulation, which was linked with fewer attention‐related problems at age 4. In both ethnic contexts, children's emotion regulation was concurrently associated with better psychological adjustment, and high emotionality was associated with more problems. Parental values were not associated with children's adjustment.Highlights

This study from infancy to school age analyses psychological adjustment and its correlates among children growing up in single‐ and dual‐ethnic families.
Parent‐infant unbalanced co‐regulation related with parent‐reported ADHD problems in preschool children who had more emotional problems in dual‐ethnic than single‐ethnic families.
Found differences in parental values and emotion socialization did not expose children in dual‐ethnic families to enduring risk for problems in emotion regulation or adjustment.
3T chemical shift‐encoded MRI: Detection of altered proximal femur marrow adipose tissue composition in glucocorticoid users and validation with magnetic resonance spectroscopy
Authors: Martel Dimitri , Leporq Benjamin , Saxena Amit , Belmont H. Michael , Turyan Gabrielle , Honig Stephen , Regatte Ravinder R. , Chang Gregory 
Published: December 2018

BackgroundOsteoporosis (OP) results in weak bone and can ultimately lead to fracture. Drugs such as glucocorticoids can also induce OP (glucocorticoid‐induced osteoporosis [GIO]). Bone marrow adipose tissue composition and quantity may play a role in OP pathophysiology, but has not been thoroughly studied in GIO compared to primary OP.Purpose/HypothesisChemical shift‐encoded (CSE) MRI allows detection of subregional differences in bone marrow adipose tissue composition and quantity in the proximal femur of GIO compared to OP subjects and has high agreement with the reference standard of magnetic resonance spectroscopy (MRS).Study TypeProspective.SubjectsIn all, 18 OP and 13 GIO subjects.Fields Strength3T.SequenceMultiple gradient‐echo, stimulated echo acquisition mode (STEAM).AssessmentSubjects underwent CSE‐MRI in the proximal femurs, and for each parametric map regions of interest (ROIs) were assessed in the femoral head (fHEAD), femoral neck (fNECK), Ward's triangle (fTRIANGLE), and the greater trochanter (GTROCH). In addition, we compared CSE‐MRI against the reference standard of MRS performed in the femoral neck and Ward's triangle.Statistical TestsDifferences between OP/GIO were investigated using the Mann–Whitney nonparametric test. Bland–Altman methodology was used to assess measurement agreement between CSE‐MRI and MRS.ResultsGIO compared with OP subjects demonstrated: decreased monounsaturated fat fraction (MUFA) (–2.1%, P < 0.05) in fHEAD; decreased MUFA (–3.8%, P < 0.05), increased saturated fat fraction (SFA) (5.5%, P < 0.05), and decreased (–3.8 msec, P < 0.05) in fNECK; decreased proton density fat fraction (PDFF) (–15.1%, P < 0.05), MUFA (–9.8%, P < 0.05), polyunsaturated fat fraction (PUFA) (–1.8%, P < 0.01), increased SFA (11.6%, P < 0.05), and decreased (–5.4 msec, P < 0.05) in fTRIANGLE; and decreased (–1.5 msec, P < 0.05) in GTROCH. There was high measurement agreement between MRI and MRS using the Bland–Altman test.Data Conclusion3T CSE‐MRI may allow reliable assessment of subregional bone marrow adipose tissue (bMAT) quantity and composition in the proximal femur in a clinically reasonable scan time. Glucocorticoids may alter the lipid profile of bMAT and potentially result in reduced bone quality.Level of Evidence: 2Technical Efficacy: Stage 2J. Magn. Reson. Imaging 2019;50:490–496.
Estimation of soil texture from permanent wilting point measured with a chilled‐mirror dewpoint technique
Authors: Farrick Kegan K. , Wuddivira Mark N. , Martin Osei 
Published: December 2018

AbstractSoil texture is an important factor governing a range of physical properties and processes in soil. The clay and fine fractions of soil are particularly important in controlling soil water retention, hydraulic properties, water flow and transport. Modern soil texture analysis techniques (x‐ray attenuation, laser diffraction and particle counting) are very laborious with expensive instrumentation. Chilled‐mirror dewpoint potentiameters allows for the rapid measurement of the permanent wilting point (PWP) of soil. As the PWP is strongly dictated by soil texture, we tested the applicability of PWP measured by a dewpoint potentiameter in predicting the clay, silt and sand content of humid tropical soils. The clay, silt, and sand content, organic matter and PWP were determined for 21 soils. Three regression models were developed to estimate the fine fractions and validated using independent soil data. While the first model showed reasonable accuracy (RMSE 16.4%; MAE 13.5%) in estimating the clay, incorporating the organic matter into the equation improved the predictions of the second model (RMSE 17.3%; MAE 10.9%). When used on all soil data, the accuracy of the third model in predicting the fine fraction was poor (RMSE 31.9%; MAE 24.5%). However, for soils with silt content greater than 30%, the model prediction was quite accurate (RMSE 7–12%; MAE 7–9%). The models were used to estimate the sand content and soil textures of soils, which proved relatively accurate. The dewpoint potentiometer can serve a dual purpose of rapidly estimating the PWP and the clay, fine fraction, and soil texture of soils in a cost efficient way.