bluuebunny/crossref_metadata_2025_split huggingface dataset:
Contrasting microbial community responses to salinization and straw amendment in a semiarid bare soil and its wheat rhizosphere
Authors: Szoboszlay Márton , Näther Astrid , Liu Bei , Carrillo Angel , Castellanos Thelma , Smalla Kornelia , Jia Zhongjun , Tebbe Christoph C. 
Published: July 2019

AbstractSoil salinization is a major constraint of agriculture in semiarid ecosystems. In this study soil microcosms were applied to evaluate the impact of a lower- and higher-level salinization treatment of a pristine scrubland soil on the abundance ofBacteria,Archaea, andFungi, and on prokaryotic diversity in bare soil and the rhizosphere of wheat assessed by qPCR and high-throughput sequencing of 16S rRNA gene amplicons. Furthermore, the impact of soil straw amendment as a salt-stress alleviation strategy was studied. While the low-level salinity stimulated plant growth, the seedlings did not survive under the higher-level salinity unless the soil was amended with straw. Without the straw amendment, salinization had only minor effects on the microbial community in bare soil. On the other hand, it decreased prokaryotic diversity in the rhizosphere of wheat, but the straw amendment was effective in mitigating this effect. The straw however, was not a significant nutrient source for the rhizosphere microbiota but more likely acted indirectly by ameliorating the salinity stress on the plant. Members ofProteobacteria,Actinobacteria, andFirmicuteswere abundant among the bacteria that reacted to soil salinization and the straw amendment but showed inconsistent responses indicating the large physiological diversity within these phyla.
Circulation of a novel strain of dolphin morbillivirus (DMV) in stranded cetaceans in the Mediterranean Sea
Authors: Mira Francesco , Rubio-Guerri Consuelo , Purpari Giuseppa , Puleio Roberto , Caracappa Giulia , Gucciardi Francesca , Russotto Laura , Loria Guido Ruggero , Guercio Annalisa 
Published: July 2019

AbstractDolphin morbillivirus (DMV) has been responsible for several outbreaks of systemic infection and has resulted in cetacean strandings in the Mediterranean. In August-October 2016, seven striped dolphins (Stenella coeruleoalba) stranded on the Sicilian coastline (Italy) tested positive for DMV. Tissue samples from brain, lung, pulmonary lymph nodes, heart, spleen, liver, stomach, intestine, kidneys and urinary bladder, as well as blowhole swabs, were collected during necropsy for molecular diagnostics and pathology studies. Extracted tissue RNA was screened for DMV by real-time reverse transcription polymerase chain reaction (PCR). Some tissues exhibited microscopic lesions that were consistent with DMV infection on histopathological and immunohistochemical grounds. Conventional reverse transcription PCR to target partial nucleoprotein and phosphoprotein genes yielded sequences used to genetically characterize the associated DMV strain. DMV RNA was detected by both PCR assays in all tested tissues of the seven dolphins, which suggests systemic infections, but was absent from another dolphin stranded on the Sicilian coastline during the same period. The partial phosphoprotein and nucleoprotein gene sequences from the positive dolphins were 99.7% and 99.5% identical, respectively, to the DMV sequences recently observed in cetaceans stranded on the Spanish Mediterranean. Our study suggests that this DMV strain is circulating in the Mediterranean.
Effects of Composite LED Light on Root Growth and Antioxidant Capacity of Cunninghamia lanceolata Tissue Culture Seedlings
Authors: Xu Yuanyuan , Liang Yuyao , Yang Mei 
Published: July 2019

AbstractWe used the 12th generation of the Cunninghamia (C.) lanceolata tissue culture seedlings, and white light emitting diode (LED) light as control (CK). We applied five composite LED light treatments, red-blue 4:1, 8:1 (4R1B and 8R1B), red-blue-purple 8:1:1 (8R1B1P), and red-blue-purple-green 6:1:1:1, 8:1:1:1 (6R1B1P1G and 8R1B1P1G), to study the effects of light quality on root growth characteristics and antioxidant capacity of C. lanceolata tissue culture seedlings. The results showed that: (1) rooting rate, average root number, root length, root surface area, and root activity were higher with 6R1B1P1G and 8R1B1P1G treatments compared to 4R1B, 8R1B, 8R1B1P and CK treatments; and the root growth parameters under the 8R1B1P1G treatment were as high as 95.50% for rooting rate, 4.63 per plant of the average number of root, 5.95 cm root length, 1.92 cm2 surface area, and 145.56 ng/(g·h) root activity, respectively. (2) The composite lights of 4R1B, 8R1B, 8R1B1P, 6R1B1P1G, and 8R1B1P1G are beneficial for the accumulation of soluble sugar content (SSC) and soluble protein content (SPC), but not conducive for the increase of free proline content (FPC); the plants under 6R1B1P1G and 8R1B1P1G treatments had higher superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), ascorbate peroxidase (APX) activity and lower malondialdehyde (MDA), polyphenol oxidase (PPO) activity. (3) Redundancy analysis showed that POD activity positively correlated with root activity; SPC, SOD and CAT activities positively correlated with root growth parameters; while SSC, MDA content, APX and PPO activities negatively correlated with root growth parameters. These results suggest that the responses of root growth and antioxidant capacity of the C. lanceolata tissue culture seedlings to different light qualities vary. The relationship between root growth parameters and antioxidant capacity was closely related. Red-blue-purple-green was the most suitable composite light quality for root growth of C. lanceolata tissue culture seedlings, and 8:1:1:1 was the optimal ratio, under which the rooting rate, root activity and root growth of tissue culture seedlings peaked.
Synchronised nesting aggregations are associated with enhanced capacity for extended embryonic arrest in olive ridley sea turtles
Authors: Williamson Sean A. , Evans Roger G. , Robinson Nathan J. , Reina Richard D. 
Published: July 2019

AbstractSea turtle species in the genusLepidochelysexhibit an unusual behavioural polymorphism, nesting in both aggregations and solitarily. Aggregated nesting events, termed ‘arribadas’, involve hundreds of thousands of females congregating at a single nesting beach over a few days to oviposit their eggs. Aggregate and solitary nesting behaviours are associated with distinct inter-nesting intervals, three and four weeks for non-arribada and arribada nesters respectively. Consequently, embryos are maintained in pre-ovipositional embryonic arrest in the hypoxic oviduct for different lengths of time depending on the mother’s reproductive behaviour. However, sea turtle embryos are limited in their capacity to remain in arrest and will subsequently die if held in hypoxia too long. Here, we tested whether embryos oviposited during arribada or non-arribada nesting differ in their capacity to be maintained in pre-ovipositional arrest. Olive ridley turtle (Lepidochelys olivacea) eggs from eight clutches (four from each nesting tactic) were divided among seven treatments after oviposition; normoxia (control; 21% O2), or hypoxia (1% O2) for 3, 3.5, 4, 8, 15 or 30 days, before being returned to normoxia. Arribada eggs were capable of extending pre-ovipositional arrest for longer, with some eggs from the 8- and 15-day hypoxia treatment still hatching while no non-arribada eggs hatched after more than four days in hypoxia. This difference in embryonic capacity to survive extended periods of arrest may be an important mechanism facilitating arribada behaviour by allowing longer inter-nesting intervals. Our finding provides an intriguing insight into the physiological mechanisms that are integral to this unique mass-nesting behaviour.
Free-hand gas identification based on transfer function ratios without gas flow control
Authors: Imamura Gaku , Shiba Kota , Yoshikawa Genki , Washio Takashi 
Published: July 2019

AbstractGas identification is one of the most important functions of a gas sensor system. To identify gas species from sensing signals without gas flow control such as pumps or mass flow controllers, it is necessary to extract decisive dynamic features from complex sensing signals due to uncontrolled airflow. For that purpose, various analysis methods using system identification techniques have been proposed, whereas a method that is not affected by a gas input pattern has been demanded to enhance the robustness of gas identification. Here we develop a novel gas identification protocol based on a transfer function ratio (TFR) that is intrinsically independent of a gas input pattern. By combining the protocol with MEMS-based sensors—Membrane-type Surface stress Sensors (MSS), we have realized gas identification with a free-hand measurement, in which one can simply hold a small sensor chip near samples. From sensing signals obtained through the free-hand measurement, we have developed highly accurate machine learning models that can identify odors of spices and herbs as well as solvent vapors. Since no bulky gas flow control units are required, this protocol will expand the applicability of gas sensors to portable electronics, leading to practical artificial olfaction.
MicroRNA-214 targets PTK6 to inhibit tumorigenic potential and increase drug sensitivity of prostate cancer cells
Authors: Cagle Patrice , Niture Suryakant , Srivastava Anvesha , Ramalinga Malathi , Aqeel Rasha , Rios-Colon Leslimar , Chimeh Uchechukwu , Suy Simeng , Collins Sean P. , Dahiya Rajvir , Kumar Deepak 
Published: July 2019

AbstractProstate cancer is the most commonly diagnosed cancer in men with African American men disproportionally suffering from the burden of this disease. Biomarkers that could discriminate indolent from aggressive and drug resistance disease are lacking. MicroRNAs are small non-coding RNAs that affect numerous physiological and pathological processes, including cancer development and have been suggested as biomarkers and therapeutic targets. In the present study, we investigated the role of miR-214 on prostate cancer cell survival/migration/invasion, cell cycle regulation, and apoptosis. miR-214 was differentially expressed between Caucasian and African American prostate cancer cells. Importantly, miR-214 overexpression in prostate cancer cells induced apoptosis, inhibiting cell proliferation and colony forming ability. miR-214 expression in prostate cancer cells also inhibited cell migration and 3D spheroid invasion. Mechanistically, miR-214 inhibited prostate cancer cell proliferation by targeting protein tyrosine kinase 6 (PTK6). Restoration of PTK6 expression attenuated the inhibitory effect of miR-214 on cell proliferation. Moreover, simultaneous inhibition of PTK6 by ibrutinib and miR-214 significantly reduced cell proliferation/survival. Our data indicates that miR-214 could act as a tumor suppressor in prostate cancer and could potentially be utilized as a biomarker and therapeutic target.
Adverse perinatal outcomes for obese women are influenced by the presence of comorbid diabetes and hypertensive disorders
Authors: Aubry Evelyne M. , Oelhafen Stephan , Fankhauser Niklaus , Raio Luigi , Cignacco Eva L. 
Published: July 2019

AbstractMaternal obesity often occurs together with comorbid diabetes and hypertensive disorders. All three conditions are independently associated with negative perinatal outcomes. Our objective was to determine the risk and burden of adverse perinatal outcome that could be attributed to maternal obesity in combination with a comorbid status. We analyzed data from 324′664 singleton deliveries in Switzerland between 2005 and 2016. For the association of maternal obesity in the presence or absence of comorbidities with various perinatal outcomes, we estimated adjusted relative risk (RR) using multivariable regression modeling and determined the multivariable-adjusted attributable fraction of the population (AFp). Obesity was a main predictor for macrosomia, fracture of the clavicle, failure to progress in labor and prolonged labor. By stratifying women based on comorbidities, we identified significantly increased risk for preterm birth and early neonatal death only for women diagnosed with a comorbidity. However, various other outcomes were independently associated with either obesity or comorbidities. The AFp showed greatest reduction in comorbidities (15.4/15.0/13.2%), in macrosomia (6.3%) and in shoulder dystocia (4.8%) if all women were to become non-obese. We suggest that comorbidities such as diabetes and hypertensive disorders should be considered when relating maternal obesity to adverse perinatal outcomes.
Chemical Vapor Deposition of Organic-Inorganic Bismuth-Based Perovskite Films for Solar Cell Application
Authors: Sanders S. , Stümmler D. , Pfeiffer P. , Ackermann N. , Simkus G. , Heuken M. , Baumann P. K. , Vescan A. , Kalisch H. 
Published: July 2019

AbstractPerovskite solar cells have shown a rapid increase of performance and overcome the threshold of 20% power conversion efficiency (PCE). The main issues hampering commercialization are the lack of deposition methods for large areas, missing long-term device stability and the toxicity of the commonly used Pb-based compounds. In this work, we present a novel chemical vapor deposition (CVD) process for Pb-free air-stable methylammonium bismuth iodide (MBI) layers, which enables large-area production employing close-coupled showerhead technology. We demonstrate the influence of precursor rates on the layer morphology as well as on the optical and crystallographic properties. The impact of substrate temperature and layer thickness on the morphology of MBI crystallites is discussed. We obtain smooth layers with lateral crystallite sizes up to 500 nm. Moreover, the application of CVD-processed MBI layers in non-inverted perovskite solar cells is presented.
Methane-fuelled biofilms predominantly composed of methanotrophic ANME-1 in Arctic gas hydrate-related sediments
Authors: Gründger Friederike , Carrier Vincent , Svenning Mette M. , Panieri Giuliana , Vonnahme Tobias R. , Klasek Scott , Niemann Helge 
Published: July 2019

AbstractSedimentary biofilms comprising microbial communities mediating the anaerobic oxidation of methane are rare. Here, we describe two biofilm communities discovered in sediment cores recovered from Arctic cold seep sites (gas hydrate pingos) in the north-western Barents Sea, characterized by steady methane fluxes. We found macroscopically visible biofilms in pockets in the sediment matrix at the depth of the sulphate-methane-transition zone. 16S rRNA gene surveys revealed that the microbial community in one of the two biofilms comprised exclusively of putative anaerobic methanotrophic archaea of which ANME-1 was the sole archaeal taxon. The bacterial community consisted of relatives of sulphate-reducing bacteria (SRB) belonging to uncultured Desulfobacteraceae clustering into SEEP-SRB1 (i.e. the typical SRB associated to ANME-1), and members of the atribacterial JS1 clade. Confocal laser scanning microscopy demonstrates that this biofilm is composed of multicellular strands and patches of ANME-1 that are loosely associated with SRB cells, but not tightly connected in aggregates. Our discovery of methanotrophic biofilms in sediment pockets closely associated with methane seeps constitutes a hitherto overlooked and potentially widespread sink for methane and sulphate in marine sediments.
Selective cytotoxicity and antifungal properties of copper(II) and cobalt(II) complexes with imidazole-4-acetate anion or 1-allylimidazole
Authors: Gałczyńska Katarzyna , Ciepluch Karol , Madej Łukasz , Kurdziel Krystyna , Maciejewska Barbara , Drulis-Kawa Zuzanna , Węgierek-Ciuk Aneta , Lankoff Anna , Arabski Michał 
Published: July 2019

AbstractThe physicochemical properties of metal complexes determine their potential applications as antitumor agents. In this study, the antitumor properties of mononuclear cobalt(II) and copper(II) coordination compounds (stoichiometry: [Co(iaa)2(H2O)2]·H2O (iaa = imidazole-4-acetate anion), [Co(1-allim)6](NO3)2 (1-allim = 1-allylimidazole), [Cu(iaa)2H2O] and [Cu(1-allim)4(NO3)2]) and their ligands have been evaluated on human lung carcinoma A549 cells and normal bronchial BEAS-2B cells. Designing the chemical structure of new antitumor agents the possible interactions with macromolecules such as DNA or proteins should be take into account. PCR gene tlr4 product served as DNA model, whereas lysozyme and phage-derived endolysin (both peptidoglycan degrading enzymes) were applied as protein/enzyme model. The interactions were analysed using PCR-HRM and circular dichroism, FT-IR, spectrophotometry, respectively. Additionally, the antimicrobial properties of the complexes at a non-cytotoxic concentration were analyzed against S. aureus, E. coli, P. aeruginosa and C. albicans strains. The results obtained in this study showed the selective cytotoxicity of metal complexes, mainly [Cu(1-allim)4(NO3)2] towards tumor cells. From all tested compounds, only [Co(iaa)2(H2O)2].H2O non-covalently interacts with DNA. Cu(II) and Co(II) complexes did not affect the secondary conformation of tested proteins but modified the hydrolytic activity of enzymes (lysozyme and endolysin). Moreover, only [Co(iaa)2(H2O)2].H2O exhibited the antifungal properties. In conclusion, Co(II) and Cu(II) metal complexes bearing two imidazole-4-acetate ligands seemed to be promising antitumor and antifungal agents for future drug design and application.
Waterborne Polyurethanes as a New and Promising Class of Kinetic Inhibitors for Methane Hydrate Formation
Authors: Farhadian Abdolreza , Kudbanov Arman , Varfolomeev Mikhail A. , Dalmazzone Didier 
Published: July 2019

AbstractA facile, new and promising technique based on waterborne polymers for designing and synthesizing kinetic hydrate inhibitors (KHIs) has been proposed to prevent methane hydrate formation. This topic is challenging subject in flow assurance problems in gas and oilfields. Proposed technique helps to get KHIs with required number and distance of hydrophilic and hydrophobic groups in molecule and good solubility in water. The performance of these new KHIs was investigated by high pressure micro-differential scanning calorimeter (HP-μDSC) and high-pressure autoclave cell. The results demonstrated the high performance of these inhibitors in delay the induction time (10–20 times) and reduce the hydrate growth rate (3 times). Also they did not increase hydrate dissociation temperature in comparison with pure water and show thermodynamic inhibition as well. Inhibition effect of synthesized polymers is improved with the increase of concentration significantly. Since this is the first report of the use of waterborne polymers as kinetic hydrate inhibitor, we expect that KHIs based on waterborne-based polymers can be a prospective option for preventing methane hydrate formation.
Synergistic mechanisms of Sanghuang–Danshen phytochemicals on postprandial vascular dysfunction in healthy subjects: A network biology approach based on a clinical trial
Authors: Lim Yeni , Hwang Woochang , Kim Ji Yeon , Lee Choong Hwan , Kim Yong-Jae , Lee Doheon , Kwon Oran 
Published: July 2019

AbstractWith the increased risk of cardiovascular disease, the use of botanicals for vascular endothelial dysfunction has intensified. Here, we explored the synergistic mechanisms of Sanghuang–Danshen (SD) phytochemicals on the homeostatic protection against high-fat-induced vascular dysfunction in healthy subjects, using a network biology approach, based on a randomised crossover clinical trial. Seventeen differential markers identified in blood samples taken at 0, 3 and 6 h post-treatment, together with 12SD phytochemicals, were mapped onto the network platform, termed the context-oriented directed associations. The resulting vascular sub-networks illustrated associations between 10 phytochemicals with 32 targets implicated in 143 metabolic/signalling pathways. The three key events included adhesion molecule production (ellagic acid, fumaric acid and cryptotanshinone; VCAM-1, ICAM-1 and PLA2G2A; fatty acid metabolism), platelet activation (ellagic acid, protocatechuic acid and tanshinone IIA; VEGFA, APAF1 and ATF3; mTOR, p53, Rap1 and VEGF signalling pathways) and endothelial inflammation (all phytochemicals, except cryptotanshinone; 29 targets, including TP53 and CASP3; MAPK and PI3K-Akt signalling pathways, among others). Our collective findings demonstrate a potential of SD to protect unintended risks of vascular dysfunction in healthy subjects, providing a deeper understanding of the complicated synergistic mechanisms of signature phytochemicals in SD.
Silica nanoparticles produced by explosive flash vaporization during earthquakes
Authors: Amagai Takashi , Okamoto Atsushi , Niibe Takamasa , Hirano Nobuo , Motomiya Kenichi , Tsuchiya Noriyoshi 
Published: July 2019

AbstractHydrothermal activity in the crust results in the precipitation of large volumes of silica and often involves the formation of ore deposits, the shaping of geothermal systems, and recurring earthquakes. Pore fluid pressures fluctuate between lithostatic and hydrostatic, depending on seismic activity, and some models suggest the possibility of flash vaporization, given that fluid pressures can drop to the level of vapour at fault jogs during seismic slip. The phase changes of water could create extremely high supersaturations of silica, but the mechanisms of quartz vein formation under such extreme conditions remain unclear. Here we describe flash experiments conducted with silica-saturated solutions under conditions ranging from subcritical to supercritical. We found that amorphous silica is produced instantaneously as spherical nano- to micron-scale particles via nucleation and aggregation during the evaporation of water droplets. The nanoparticles are transformed to microcrystalline quartz very rapidly by dissolution and precipitation in hydrothermal solutions, with this process requiring less than one day under supercritical conditions because of the huge surface areas involved. We suggest that such short-lived silica nanoparticles have significant impacts on the dynamic changes in mechanical behaviour and hydrology of hydrothermal systems in volcanic areas.
An Electrical Model of Hydrocephalus Shunt Incorporating the CSF Dynamics
Authors: Baghbani R. 
Published: July 2019

AbstractThe accumulation of cerebrospinal fluid (CSF) in brain ventricles and subarachnoid space is known as hydrocephalus. Hydrocephalus is a result of disturbances in the secretion or absorption process of CSF. A hydrocephalus shunt is an effective method for the treatment of hydrocephalus. In this paper, at first, the procedures of secretion, circulation, and absorption of CSF are studied and subsequently, the mathematical relations governing the pressures in different interacting compartments of the brain are considered. A mechanical-electrical model is suggested based on the brain physiology and blood circulation. In the proposed model, hydrocephalus is modeled with an incremental resistance (Ro) and hydrocephalus shunt, which is a low resistance path to drain the accumulated CSF in the brain ventricles, is modeled with a resistance in series with a diode. At the end, the simulation results are shown. The simulation results can be used to predict the shunt efficiency in reducing CSF pressure and before a real shunt implementation surgery is carried out in a patient’s body.