bluuebunny/crossref_metadata_2025_split huggingface dataset:
GABA (γ-aminobutyric acid), as a thermo-protectant, to improve the reproductive function of heat-stressed mungbean plants
Authors: Priya Manu , Sharma Lomeshwar , Kaur Ramanpreet , Bindumadhava H. , Nair Ramkrishnan M. , Siddique K. H. M. , Nayyar Harsh 
Published: May 2019

AbstractRising global temperatures are proving to be detrimental for the agriculture. Hence, strategies are needed to induce thermotolerance in food crops to sustain the food production. GABA (γ-aminobutyric acid), a non-protein amino acid, can partially protect plants from high-temperature stress. This study hypothesises that declining GABA concentrations in the cells of heat-stressed mungbean plants increases the heat-sensitivity of reproductive function. Mungbean plants were grown in a natural, outdoor environment (29.3/16.1 ± 1 °C as mean day/night temperature, 1350–1550 µmol m−2 s−1 light intensity, 60–65% as mean relative humidity) until the start of the reproductive stage. Subsequently, two temperature treatments were imposed in a controlled environment—control (35/23 °C) and heat stress (45/28 °C)—at about 800 µmol m−2 s−1 light intensity and 65–70% as mean relative humidity, until pod maturity. In heat-stressed (HS) plants, endogenous GABA concentrations in leaf and anther samples had declined by 49 and 60%, respectively, and to a much lesser degree in the plants, exogenously supplemented with 1 mM GABA. The reproductive function of GABA-treated heat-stressed plants improved significantly in terms of pollen germination, pollen viability, stigma receptivity and ovule viability, compared to untreated HS controls. In addition, GABA-treated heat-stressed plants had less damage to membranes, photosynthetic machinery (chlorophyll concentration, chlorophyll fluorescence, RuBisCO activity were functionally normal) and carbon assimilation (sucrose synthesis and its utilisation) than the untreated HS controls. Leaf water status improved significantly with GABA application, including enhanced accumulation of osmolytes such as proline and trehalose due to increase in the activities of their biosynthetic enzymes. GABA-treated heat-stressed plants produced more pods (28%) and seed weight (27%) plant−1 than the untreated controls. This study is the first to report the involvement of GABA in protecting reproductive function in mungbean under heat stress, as a result of improved leaf turgor, carbon fixation and assimilation processes, through the augmentation of several enzymes related to these physiological processes.
Direct observation of vacuum arc evolution with nanosecond resolution
Authors: Zhou Zhipeng , Kyritsakis Andreas , Wang Zhenxing , Li Yi , Geng Yingsan , Djurabekova Flyura 
Published: May 2019

AbstractSufficiently high voltage applied between two metal electrodes, even in ultra high vacuum conditions, results in an inevitable discharge that lights up the entire gap, opening a conductive channel through the vacuum and parasitically consuming large amounts of energy. Despite many efforts to understand the processes that lead to this phenomenon, known as vacuum arc, there is still no consensus regarding the role of each electrode in the evolution of such a momentous process as lightning. Employing a high-speed camera, we capture the entire lightning process step-by-step with a nanosecond resolution and find which of the two electrodes holds the main responsibility for igniting the arc. The light that gradually expands from the positively charged electrode (anode), often is assumed to play the main role in the formation of a vacuum arc. However, both the nanosecond-resolution images of vacuum arc evolution and the corresponding theoretical calculations agree that the conductive channel between the electrodes is built in the form of cathodic plasma long before any significant activity develops in the anode. We show evidently that the anode illumination is weaker and plays a minor role in igniting and maintaining the conductive channel.
Improving the homogeneity of diffraction based colours by fabricating periodic patterns with gradient spatial period using Direct Laser Interference Patterning
Authors: Voisiat Bogdan , Wang Wei , Holzhey Max , Lasagni Andrés Fabián 
Published: May 2019

AbstractThis study focuses on the development of a strategy to produce periodic structures with a variable spatial period for increasing the homogeneity of structural colours by means of direct laser interference patterning. Using a four-beam interference configuration, hole-like periodic arrays are produced on stainless steel with a 70 ps pulsed laser source operating at 532 nm laser wavelength. The laser processing parameters are optimised for obtaining patterns with the highest possible diffraction efficiency and thus showing the highest possible colour intensity. A model for calculating the required spatial period to obtain a defined colour under specific conditions of illumination and observation angles is presented. A very good agreement between the captured structural colour spectrum and the real visible spectrum of light was obtained. In addition, a strategy for mixing holographic colours, in particular for obtaining the white colour is developed. Finally, the developed model is successfully integrated into machine software, in order to automatically process images that exhibit required colours at certain viewing conditions. The produced patterns are characterised using confocal microscopy and the efficiency of the first diffraction order was measured by optical spectroscopy.
Spin-dependent scattering induced negative magnetoresistance in topological insulator Bi2Te3 nanowires
Authors: Bhattacharyya Biplab , Singh Bahadur , Aloysius R. P. , Yadav Reena , Su Chenliang , Lin Hsin , Auluck S. , Gupta Anurag , Senguttuvan T. D. , Husale Sudhir 
Published: May 2019

AbstractStudies of negative magnetoresistance in novel materials have recently been in the forefront of spintronic research. Here, we report an experimental observation of the temperature dependent negative magnetoresistance in Bi2Te3 topological insulator (TI) nanowires at ultralow temperatures (20 mK). We find a crossover from negative to positive magnetoresistance while increasing temperature under longitudinal magnetic field. We observe a large negative magnetoresistance which reaches −22% at 8 T. The interplay between negative and positive magnetoresistance can be understood in terms of the competition between dephasing and spin-orbit scattering time scales. Based on the first-principles calculations within a density functional theory framework, we demonstrate that disorder (substitutional) by Ga+ ion milling process, which is used to fabricate nanowires, induces local magnetic moments in Bi2Te3 crystal that can lead to spin-dependent scattering of surface and bulk electrons. These experimental findings show a significant advance in the nanoscale spintronics applications based on longitudinal magnetoresistance in TIs. Our experimental results of large negative longitudinal magnetoresistance in 3D TIs further indicate that axial anomaly is a universal phenomenon in generic 3D metals.
Defect-induced ultimately fast volume phonon-polaritons in the wurtzite Zn0.74Mg0.26Se mixed crystal
Authors: Dicko H. , Pagès O. , Shoker M. B. , Firszt F. , Strzałkowski K. , Maillard A. , Polian A. , Battie Y. , Broch L. , En Naciri A. , Postnikov A. V. , Paszkowicz W. , Itié J.-P. 
Published: May 2019

AbstractVolume-phonon-polaritons (VPP’s) propagating at a light-in-vacuum-like speed are identified in the wurtzite-type Zn0.74Mg0.26Se mixed crystal by near-forward Raman scattering. Their detection is selective to both the laser energy and the laser polarization, depending on whether the ordinary (n0) or extraordinary (ne) refractive index is addressed. Yet, no significant linear birefringence (n0 $${\boldsymbol{\simeq }}$$≃ ne) is observed by ellipsometry. The current access to ultrafastVPP’s is attributed to the quasi-resonant Raman probing of an anomalous dispersion ofn0due to impurity levels created deep in the optical band gap by oriented structural defects. The resonance conditions are evidenced by a dramatic enhancement of the Raman signals due to the polar modes. Hence, this work reveals a capacity for the lattice defects’ engineering to “accelerate” theVPP’s of a mixed crystal up to light-in-vacuum-like speeds. This is attractive for ultrafast signal processing in the terahertz range. On the fundamental side we provide an insight into theVPP’s created by alloying ultimately close to the center of the Brillouin zone.
An optimal BMI range associated with a lower risk of mortality among HIV-infected adults initiating antiretroviral therapy in Guangxi, China
Authors: Jiang Junjun , Qin Xionglin , Liu Huifang , Meng Sirun , Abdullah Abu S. , Huang Jinping , Qin Chunwei , Liu Yanfen , Huang Yunxuan , Qin Fengxiang , Huang Jiegang , Zang Ning , Liang Bingyu , Ning Chuanyi , Liao Yanyan , Liang Hao , Wu Fengyao , Ye Li 
Published: May 2019

AbstractPrevious studies investigating HIV-infected patients suggested a direct link between underweight and the mortality rate of AIDS. However, there was a lack of evidence showing the optimal range of initial body mass index (BMI) patients maintain during antiretroviral therapy (ART). We aimed to evaluate associations of the BMI values pre-ART and during the entire ART duration with mortality among HIV-positive individuals. In total, 5101 HIV/AIDS patients, including 1439 (28.2%) underweight, 3047 (59.7%) normal-weight, 548 (10.7%) overweight and 67 (1.3%) obese patients, were included in this cohort. The cumulative mortality of underweight, normal-weight, and overweight were 2.4/100 person-years (95% CI 1.9–2.9), 1.1/100 person-years (95% CI 0.9–1.3), and 0.5/100 person-years (95% CI 0.1–0.9), respectively. Cumulative mortality was lower in both the normal-weight and overweight populations than in the underweight population, with an adjusted hazard ratio (AHR) of 0.5 (95% CI 0.4–0.7, p < 0.001) and 0.3 (95% CI 0.1–0.6, p = 0.002), respectively. Additionally, in the 1176 patients with available viral load data, there was significant difference between the underweight and normal-weight groups after adjustment for all factors, including viral load (p = 0.031). This result suggests that HIV-infected patients in Guangxi maintaining a BMI of 19–28 kg/m2, especially 24–28 kg/m2, have a reduced risk of death.
Non-Monotonic Aerosol Effect on Precipitation in Convective Clouds over Tropical Oceans
Authors: Liu Huan , Guo Jianping , Koren Ilan , Altaratz Orit , Dagan Guy , Wang Yuan , Jiang Jonathan H. , Zhai Panmao , Yung Yuk L. 
Published: May 2019

AbstractAerosol effects on convective clouds and associated precipitation constitute an important open-ended question in climate research. Previous studies have linked an increase in aerosol concentration to a delay in the onset of rain, invigorated clouds and stronger rain rates. Here, using observational data, we show that the aerosol effect on convective clouds shifts from invigoration to suppression with increasing aerosol optical depth. We explain this shift in trend (using a cloud model) as the result of a competition between two types of microphysical processes: cloud-core-based invigorating processes vs. peripheral suppressive processes. We show that the aerosol optical depth value that marks the shift between invigoration and suppression depends on the environmental thermodynamic conditions. These findings can aid in better parameterizing aerosol effects in climate models for the prediction of climate trends.
Enhanced auditory disembedding in an interleaved melody recognition test is associated with absolute pitch ability
Authors: Wenhart Teresa , Hwang Ye-Young , Altenmüller Eckart 
Published: May 2019

AbstractAbsolute pitch (AP) and autism have recently been associated with each other. Neurocognitive theories of autism could perhaps explain this co-occurrence. This study investigates whether AP musicians show an advantage in an interleaved melody recognition task (IMRT), an auditory version of an embedded figures test often investigated in autism with respect to the these theories. A total of N = 59 professional musicians (AP = 27) participated in the study. In each trial a probe melody was followed by an interleaved sequence. Participants had to indicate as to whether the probe melody was present in the interleaved sequence. Sensitivity index d′ and response bias c were calculated according to signal detection theory. Additionally, a pitch adjustment test measuring fine-graded differences in absolute pitch proficiency, the Autism-Spectrum-Quotient and a visual embedded figures test were conducted. AP outperformed relative pitch (RP) possessors on the overall IMRT and the fully interleaved condition. AP proficiency, visual disembedding and musicality predicted 39.2% of variance in the IMRT. No correlations were found between IMRT and autistic traits. Results are in line with a detailed-oriented cognitive style and enhanced perceptional functioning of AP musicians similar to that observed in autism.
Variable protein homeostasis in housekeeping and non-housekeeping pathways under mycotoxins stress
Authors: Sun Yu , Wen Jikai , Chen Ruohong , Deng Yiqun 
Published: May 2019

AbstractTranscript levels are the primary factor determining protein levels, but for the majority of genes, fold changes in transcript levels are larger than the corresponding changes in protein levels, a phenomenon that is termed “protein homeostasis”. However, this phenomenon is not well characterized in the context of environmental changes. In this study, we sequenced the entire transcriptome and proteome of chicken primary hepatocytes administered three mycotoxin treatments Aflatoxin B1 (AFB1), Ochoratoxin A (OTA) and Zearalenone (ZEN). Each mycotoxin induced unique set of differential expressed transcripts and proteins, suggesting variable cytotoxicity and biochemical action in cell. We found a weak positive correlation between transcript and protein changes, and the transcript changes were higher than the protein changes. Furthermore, we observed pathway-specific protein homeostasis pattern under mycotoxin stress. Specifically, the “Metabolism”, “Transcription” and “Translation” pathways (housekeeping pathways) showed lower fold changes in protein/mRNA levels than non-housekeeping pathways such as “Cell growth and death” and “Immune system”. Protein molecular weight had a weak negative effect on protein production, and this effect was stronger for non-housekeeping pathways. Overall, we hypothesize housekeeping pathways maintain stable protein production for baseline cellular function, whereas non-housekeeping pathways is associated with the fitness response to environmental stress.
Vitamin D Receptor gene polymorphisms and plasma levels are associated with lumbar disc degeneration
Authors: Yang Qinghua , Liu Yang , Guan Yewen , Zhan Xinli , Xiao Zengming , Jiang Hua , Wei Qingjun 
Published: May 2019

AbstractThe purpose of this study was to investigate the association of Vitamin D Receptor (VDR) gene polymorphisms and VDR levels with lumbar disc degeneration (LDD). TaqMan SNP Genotyping Assay was utilized to probe VDR gene polymorphisms including the FokI (rs2228570), ApaI (rs7975232) and TaqI (rs731236) in 454 patients with LDD and 485 controls. Enzyme-Linked Immunosorbent Assay (ELISA) was used to detect plasma VDR levels. The patients with LDD were divided into three subgroups (subgroup 1: lumbar disc herniation; subgroup 2: lumbar spinal stenosis; subgroup 3: lumbar spondylolisthesis) to further probe the association of plasma VDR levels and VDR gene polymorphisms and LDD. Moreover, immunohistochemistry (IHC) was implemented to evaluate VDR expression in lumbar degenerated disc and normal disc. Allele and genotype frequency of TaqI (rs731236) were significantly different in patients with LDD and controls (all P < 0.05). For TaqI polymorphism, the frequencies of T allele were significantly higher in the LDD patients compared with controls (OR = 1.319; 95%CI 1.091 to 1.595; P = 0.004, adjusted (OR = 1.319; 95%CI 1.091 to 1.595; P = 0.004, adjusted OR = 1.383; 95%CI 1.135 to 1.684; P = 0.016). Furthermore, the allele distribution showed a higher frequency of the T allele in the patients with lumbar disc herniation in subgroup 1 (OR = 1.384; 95% CI 1.105 to 1.732; P = 0.004, adjusted OR = 1.319; 95%CI 1.091 to 1.595; P = 0.016). Plasma VDR levels and VDR expression were significantly lower in patients with LDD compared with controls (all P < 0.05). Moreover, the TT genotype of TaqI polymorphism was significantly associated with lower plasma VDR levels in patients with LDD (P = 0.002). TaqI (rs731236) polymorphism was associated with a predisposition to LDD. Plasma VDR and VDR expression levels may be the marker for the occurrence and development of LDD.
Fano Metamaterials on Nanopedestals for Plasmon-Enhanced Infrared Spectroscopy
Authors: Jung Yongseok , Hwang Inyong , Yu Jaeyeon , Lee Jihye , Choi Jun-Hyuk , Jeong Jun-Ho , Jung Joo-Yun , Lee Jongwon 
Published: May 2019

AbstractWe report a sensing platform for surface-enhanced infrared absorption (SEIRA) spectroscopy, based on Fano metamaterials (FMMs) on dielectric nanopedestals. FMMs consist of two parallel gold (Au) nanorod antennas, with a small horizontal coupler attached to one of the nanorod antenna. When placed on SiO2 dielectric nanopedestals, which exhibit strong field enhancements caused by the interference between subradiant and superradiant plasmonic resonances, they provide the highly enhanced E-field intensities formed near the Au nanoantenna, which can provide more enhanced molecular detection signals. Here, the sensing characteristics of FMMs on nanopedestals structure was confirmed by comparison with FMMs on an unetched SiO2 substrate as a control sample. The control FMMs and the FMMs on nanopedestals were carefully designed to excite Fano resonance near the target 1-octadecanethiol (ODT) fingerprint vibrations. The FMMs were fabricated by using nanoimprint lithography and the nanopedestal structures were formed by isotropic dry-etching. The experimental reflection spectra containing the enhanced absorption signals of the ODT monolayer molecules was analyzed using temporal coupled-mode theory. The FMMs on nanopedestals achieved over 7% of reflection difference signal, which was 1.7 times higher signal than the one from the control FMMs. Based on the FMMs on nanopedestal structures proposed in this study, it may be widely applied to future spectroscopy and sensor applications requiring ultrasensitive detection capability.
Reconstructing faces from fMRI patterns using deep generative neural networks
Authors: VanRullen Rufin , Reddy Leila 
Published: May 2019

AbstractAlthough distinct categories are reliably decoded from fMRI brain responses, it has proved more difficult to distinguish visually similar inputs, such as different faces. Here, we apply a recently developed deep learning system to reconstruct face images from human fMRI. We trained a variational auto-encoder (VAE) neural network using a GAN (Generative Adversarial Network) unsupervised procedure over a large data set of celebrity faces. The auto-encoder latent space provides a meaningful, topologically organized 1024-dimensional description of each image. We then presented several thousand faces to human subjects, and learned a simple linear mapping between the multi-voxel fMRI activation patterns and the 1024 latent dimensions. Finally, we applied this mapping to novel test images, translating fMRI patterns into VAE latent codes, and codes into face reconstructions. The system not only performed robust pairwise decoding (>95% correct), but also accurate gender classification, and even decoded which face was imagined, rather than seen.
Advances in the molecular regulation of endothelial BMP9 signalling complexes and implications for cardiovascular disease
Authors: Wood Jennifer H. , Guo Jingxu , Morrell Nicholas W. , Li Wei 
Published: May 2019

Abstract
Bone morphogenetic protein 9 (BMP9), a member of the transforming growth factor β (TGFβ) superfamily, is a circulating vascular quiescence and endothelial protective factor, accounting for the majority of BMP activities in plasma. BMP9 and BMP10 bind preferentially to the high-affinity type I receptor activin receptor-like kinase 1 on vascular endothelial cells. Recently, many reports have highlighted the important roles of BMP9 in cardiovascular disease, particularly pulmonary arterial hypertension. In vivo, BMP9 activity and specificity are determined by tightly regulated protein–protein recognition with cognate receptors and a co-receptor, and may also be influenced by other proteins present on the endothelial cell surface (such as low-affinity receptors) and in circulation (such as TGFβ family ligands competing for the same receptors). In this review, we summarise recent findings on the role and therapeutic potential of BMP9 in cardiovascular disease and review the current understanding of how the extracellular protein–protein interaction milieu could play a role in regulating endothelial BMP9 signalling specificity and activity.
Biology is the root of variability: cautionary tales in Caenorhabditis elegans biology
Authors: Pho Kim B. , MacNeil Lesley T. 
Published: May 2019

Abstract
Reproducibility is critical for the standardization, interpretation, and progression of research. However, many factors increase variability and reduce reproducibility. In Caenorhabditis elegans research, there are many possible causes of variability that may explain why experimental outcomes sometimes differ between laboratories and between experiments. Factors contributing to experimental variability include the genetic background of both C. elegans and its bacterial diet, differences in media composition, intergenerational and transgenerational effects that may be carried over for generations, and the use of chemicals or reagents that may have unexpected consequences. This review summarizes sources of variability in C. elegans research and serves to identify laboratory practices that could influence reproducibility.
Working Memory Profiles of Children With Dyslexia, Developmental Language Disorder, or Both
Authors: Gray Shelley , Fox Annie B. , Green† Samuel , Alt Mary , Hogan Tiffany P. , Petscher Yaacov , Cowan Nelson 
Published: May 2019

Purpose
Compared to children with typical development, children with dyslexia, developmental language disorder (DLD), or both often demonstrate working memory deficits. It is unclear how pervasive the deficits are or whether the deficits align with diagnostic category. The purpose of this study was to determine whether different working memory profiles would emerge on a comprehensive battery of central executive, phonological, visuospatial, and binding working memory tasks and whether these profiles were associated with group membership.

Method

Three hundred two 2nd graders with typical development, dyslexia, DLD, or dyslexia/DLD completed 13 tasks from the Comprehensive Assessment Battery for Children–Working Memory (
Gray, Alt, Hogan, Green, & Cowan, n.d.
) that assessed central executive, phonological, and visuospatial/attention components of working memory.

Results
Latent class analyses yielded 4 distinct latent classes: low overall (21%), average with high number updating (30%), average with low number updating (12%), and high overall (37%). Children from each disability group and children from the typically developing group were present in each class.

Discussion
Findings highlight the importance of knowing an individual child's working memory profile because working memory profiles are not synonymous with learning disabilities diagnosis. Thus, working memory assessments could contribute important information about children's cognitive function over and above typical psychoeducational measures.