bluuebunny/crossref_metadata_2025_split huggingface dataset:
Temperature and oxygen adsorption coupling effects upon the surface tension of liquid metals
Authors: Gheribi Aïmen E. , Chartrand Patrice 
Published: May 2019

AbstractAn accurate knowledge of the surface tension of liquid metals is critical for many theoretical and practical applications, especially in the current context of emerging growth of nanotechnology. The surface tension and its temperature dependence are drastically influenced by the level of impurities in the metal such as oxygen, sulphur or carbon. For this reason, experimental surface tension data of metals reported in literature are scattered. Strictly speaking, when referring to the surface tension of liquid metals, both variables temperature and oxygen content must be specified. There exists no clear formalism describing the coupling effect temperature and the oxygen content upon the surface tension of liquid metals. The aim of this work is to fill this gap. A thermodynamically self-consistent formulation for the surface tension of liquid metals and semiconductors as a function of temperature and oxygen content is established. According to the proposed formalism, a reliable expression for the surface tension of pure and oxygen saturated metals is then derived. The proposed model is found to be in good agreement with available experimental data, showing a good predictive capability. Aluminium is chosen and thoroughly evaluated as a case study, due to its very high sensitivity to oxygen level. Its surface tension is explicitly formulated as a function of temperature and oxygen content.
Galactosyl carbohydrate residues on hematopoietic stem/progenitor cells are essential for homing and engraftment to the bone marrow
Authors: Takagaki Soichiro , Yamashita Rieko , Hashimoto Noriyoshi , Sugihara Kazushi , Kanari Kanako , Tabata Keisuke , Nishie Toshikazu , Oka Shogo , Miyanishi Masanori , Naruse Chie , Asano Masahide 
Published: May 2019

AbstractThe role of carbohydrate chains in leukocyte migration to inflamed sites during inflammation and trafficking to the lymph nodes under physiological conditions has been extensively characterized. Here, we report that carbohydrate chains also mediate the homing and engraftment of hematopoietic stem/progenitor cells (HSPCs) to the bone marrow (BM). In particular, we found that transplanted BM cells deficient in β-1,4-galactosyltransferase-1 (β4GalT-1) could not support survival in mice exposed to a lethal dose of irradiation. BM cells obtained from mice deficient in β4GalT-1 showed normal colony-forming activity and hematopoietic stem cell numbers. However, colony-forming cells were markedly rare in the BM of recipient mice 24 h after transplantation of β4GalT-1-deficient BM cells, suggesting that β4GalT-1 deficiency severely impairs homing. Similarly, BM cells with a point mutation in the UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase gene, encoding a key enzyme in sialic acid biosynthesis, showed mildly impaired homing and engraftment abilities. These results imply that the galactosyl, but not sialyl residues in glycoproteins, are essential for the homing and engraftment of HSPCs to the BM. These findings suggest the possibility of modifying carbohydrate structures on the surface of HSPCs to improve their homing and engraftment to the BM in clinical application.
Facile tuning of the mechanical properties of a biocompatible soft material
Authors: Vigolo Daniele , Ramakrishna Shivaprakash N. , deMello Andrew J. 
Published: May 2019

AbstractHerein, we introduce a method to locally modify the mechanical properties of a soft, biocompatible material through the exploitation of the effects induced by the presence of a local temperature gradient. In our hypotheses, this induces a concentration gradient in an aqueous sodium alginate solution containing calcium carbonate particles confined within a microfluidic channel. The concentration gradient is then fixed by forming a stable calcium alginate hydrogel. The process responsible for the hydrogel formation is initiated by diffusing an acidic oil solution through a permeable membrane in a 2-layer microfluidic device, thus reducing the pH and freeing calcium ions. We characterize the gradient of mechanical properties using atomic force microscopy nanoindentation measurements for a variety of material compositions and thermal conditions. Significantly, our novel approach enables the creation of steep gradients in mechanical properties (typically between 10–100 kPa/mm) on small scales, which will be of significant use in a range of tissue engineering and cell mechanosensing studies.
Unpredictable Chronic Mild Stress Suppresses the Incorporation of New Neurons at the Caudal Pole of the Chicken Hippocampal Formation
Authors: Gualtieri F. , Armstrong E. A. , Longmoor G. K. , D’Eath R. B. , Sandilands V. , Boswell T. , Smulders T. V. 
Published: May 2019

AbstractIn the mammalian brain, adult hippocampal neurogenesis (AHN) is suppressed by chronic stress, primarily at the ventral pole of the hippocampus. Based upon anatomy, we hypothesise that the caudal pole of the avian Hippocampal Formation (HF) presents a homologous subregion. We thus investigated whether AHN is preferentially suppressed in the caudal chicken HF by unpredictable chronic mild stress (UCMS). Adult hens were kept in control conditions or exposed to UCMS for 8 weeks. Hens experiencing UCMS had significantly fewer doublecortin-positive multipolar neurons (p < 0.001) and beaded axons (p = 0.021) at the caudal pole of the HF than controls. UCMS birds also had smaller spleens and lower baseline plasma corticosterone levels compared to controls. There were no differences in AHN at the rostral pole, nor were there differences in expression of genetic mediators of the HPA stress response in the pituitary or adrenal glands. Duration of tonic immobility and heterophil/lymphocyte (H/L) ratios were also not responsive to our UCMS treatment. These results support the hypothesised homology of the caudal pole of the avian HF to the ventral pole of the rodent hippocampus. Furthermore, quantifying neurogenesis in the caudal HF post-mortem may provide an objective, integrative measure of welfare in poultry, which may be more sensitive than current welfare measures.
The impact of rare but severe vaccine adverse events on behaviour-disease dynamics: a network model
Authors: Bhattacharyya Samit , Vutha Amit , Bauch Chris T. 
Published: May 2019

AbstractThe propagation of rumours about rare but severe adverse vaccination or infection events through social networks can strongly impact vaccination uptake. Here we model a coupled behaviour-disease system where individual risk perception regarding vaccines and infection are shaped by their personal experiences and the experiences of others. Information about vaccines and infection either propagates through the network or becomes available through globally available sources. Dynamics are studied on a range of network types. Individuals choose to vaccinate according to their personal perception of risk and information about infection prevalence. We study events ranging from common and mild, to severe and rare. We find that vaccine and infection adverse events have asymmetric impacts. Vaccine (but not infection) adverse events may significantly prolong the tail of an outbreak. Similarly, introducing a small risk of a vaccine adverse event may cause a steep decline in vaccine coverage, especially on scale-free networks. Global dissemination of information about infection prevalence boosts vaccine coverage more than local dissemination. Taken together, these findings highlight the dangers associated with vaccine rumour propagation through scale-free networks such as those exhibited by online social media, as well as the benefits of disseminating public health information through mass media.
Karst dolines provide diverse microhabitats for different functional groups in multiple phyla
Authors: Bátori Zoltán , Vojtkó András , Maák István Elek , Lőrinczi Gábor , Farkas Tünde , Kántor Noémi , Tanács Eszter , Kiss Péter János , Juhász Orsolya , Módra Gábor , Tölgyesi Csaba , Erdős László , Aguilon Dianne Joy , Keppel Gunnar 
Published: May 2019

AbstractFine-scale topographic complexity creates important microclimates that can facilitate species to grow outside their main distributional range and increase biodiversity locally. Enclosed depressions in karst landscapes (‘dolines’) are topographically complex environments which produce microclimates that are drier and warmer (equator-facing slopes) and cooler and moister (pole-facing slopes and depression bottoms) than the surrounding climate. We show that the distribution patterns of functional groups for organisms in two different phyla, Arthropoda (ants) and Tracheophyta (vascular plants), mirror this variation of microclimate. We found that north-facing slopes and bottoms of solution dolines in northern Hungary provided key habitats for ant and plant species associated with cooler and/or moister conditions. Contrarily, south-facing slopes of dolines provided key habitats for species associated with warmer and/or drier conditions. Species occurring on the surrounding plateau were associated with intermediate conditions. We conclude that karst dolines provide a diversity of microclimatic habitats that may facilitate the persistence of taxa with diverse environmental preferences, indicating these dolines to be potential safe havens for multiple phyla under local and global climate oscillations.
Microvesicles from cerebrospinal fluid of patients with Alzheimer’s disease display reduced concentrations of tau and APP protein
Authors: Spitzer Philipp , Mulzer Linda-Marie , Oberstein Timo Jan , Munoz Luis Enrique , Lewczuk Piotr , Kornhuber Johannes , Herrmann Martin , Maler Juan Manuel 
Published: May 2019

AbstractMicrovesicles are small membranous particles generated during cellular activation or stress. The analysis of the content and the surface of microvesicles allow conclusions about the cells they are originating from and the underlying pathology. Therefore, CSF microvesicles have been suggested to be promising targets to monitor the (etio)pathology of neurodegenerative diseases. Microvesicles in the CSF of 15 patients with Alzheimer’s disease and 15 controls were analyzed by flow cytometry regarding the levels of CD3, CD4, CD45, CD64, BACE1, Aβ, APP and tau. The results were replicated in a second cohort comprising 14 patients with Alzheimer’s disease and 9 controls. The levels of tau and APP were reduced in microvesicles of Alzheimer’s disease patients. A significant change was neither observed in the number of microvesicles nor in the expression of the other antigens. Tau and APP in microvesicles separated patients with Alzheimer’s disease from controls with an AUC of 0.84 and 0.89 respectively. We conclude that tau and APP in CSF microvesicles are promising biomarkers which could directly provide information about the Alzheimer pathology on a cellular level.
Classification and characterization of hemocytes from two Asian horseshoe crab species Tachypleus tridentatus and Carcinoscorpius rotundicauda
Authors: Wu Fangli , Xie Zhe , Yan Mingyan , Li Qiongzhen , Song Jie , Hu Menghong , Wang Youji 
Published: May 2019

AbstractIn present study, transmission electron microscopy and flow cytometry were utilized to investigate the classification, characterization and immune functions of hemocytes from horseshoe crab, Tachypleus tridentatus and Carcinoscorpius rotundicauda. Three types of hemocytes were distinguished respectively: the granular cell, the semi-granular cell and the hyaline cell by transmission electron microscopy, while three hemocyte subpopulations (Gate 1 cell, Gate 2 cell, Gate 3 cell) were classified by flow cytometry. Hyaline cell was the major cell type with the highest nuclear-cytoplasmic ratio and granular cell and semi-granular cell showed lower ratios. Immune parameters of hemocytes in horseshoe crabs were investigated by flow cytometry. Different hemocyte subpopulations respond for diverse functions. Lysosomal contents and hemocyte mortality in Gate 3 cell subpopulation were higher than that in other subpopulations, while reactive oxygen species, phagocytosis and non-specific esterase, in Gate 1 cell subpopulation, were higher than those in other subpopulations. The hemocyte types between the two species had no significant differences in staining or morphology.
BitterSweet: Building machine learning models for predicting the bitter and sweet taste of small molecules
Authors: Tuwani Rudraksh , Wadhwa Somin , Bagler Ganesh 
Published: May 2019

AbstractThe dichotomy of sweet and bitter tastes is a salient evolutionary feature of human gustatory system with an innate attraction to sweet taste and aversion to bitterness. A better understanding of molecular correlates of bitter-sweet taste gradient is crucial for identification of natural as well as synthetic compounds of desirable taste on this axis. While previous studies have advanced our understanding of the molecular basis of bitter-sweet taste and contributed models for their identification, there is ample scope to enhance these models by meticulous compilation of bitter-sweet molecules and utilization of a wide spectrum of molecular descriptors. Towards these goals, our study provides a structured compilation of bitter, sweet and tasteless molecules and state-of-the-art machine learning models for bitter-sweet taste prediction (BitterSweet). We compare different sets of molecular descriptors for their predictive performance and further identify important features as well as feature blocks. The utility of BitterSweet models is demonstrated by taste prediction on large specialized chemical sets such as FlavorDB, FooDB, SuperSweet, Super Natural II, DSSTox, and DrugBank. To facilitate future research in this direction, we make all datasets and BitterSweet models publicly available, and present an end-to-end software for bitter-sweet taste prediction based on freely available chemical descriptors.
In vitro bioanalytical evaluation of removal efficiency for bioactive chemicals in Swedish wastewater treatment plants
Authors: Lundqvist Johan , Mandava Geeta , Lungu-Mitea Sebastian , Lai Foon Yin , Ahrens Lutz 
Published: May 2019

AbstractChemical contamination of wastewater is a problem of great environmental concern, as it poses a hazard to both the ecosystem and to human health. In this study, we have performed a bioanalytical evaluation of the presence and removal efficiency for bioactive chemicals in wastewater treatment plants (WWTPs), using in vitro assays for toxicity endpoints of high relevance for human health. Water samples were collected at the inlet and outlet of five Swedish WWTPs, all adopting a treatment technology including pretreatment, primary treatment (sedimenation), seconday treatment (biological processes), post-sedimentation, and sludge handling. The water samples were analyzed for cytotoxicity, estrogenicity, androgenicity, aryl hydrocarbon receptor (AhR) activity, oxidative stress response (Nrf2) and the ability to activate NFĸB (nuclear factor kappa-light-chain-enhancer of activated B cells) signaling. We observed clear androgenic and estrogenic activities in all inlet samples. Androgenic and estrogenic activities were also observed in all outlet samples, but the activities were lower than the respective inlet sample. AhR activity was observed in all samples, with higher activities in the inlet samples compared to the outlet samples. The removal efficiency was found to be high for androgenic (>99% for two plants and 50–60% for two plants) and estrogenic (>90% for most plants) compounds, while the removal efficiency for AhR-inducing compounds was 50–60% for most plants and 16% for one plant.
Nonlinear response from optical bound states in the continuum
Authors: Bulgakov Evgeny N. , Maksimov Dmitrii N. 
Published: May 2019

AbstractWe consider nonlinear effects in scattering of light by a periodic structure supporting optical bound states in the continuum. In the spectral vicinity of the bound states the scattered electromagnetic field is resonantly enhanced triggering optical bistability. Using coupled mode approach we derive a nonlinear equation for the amplitude of the resonant mode associated with the bound state. We show that such an equation for the isolated resonance can be easily solved yielding bistable solutions which are in quantitative agreement with the full-wave solutions of Maxwell’s equations. The coupled mode approach allowed us to cast the the problem into the form of a driven nonlinear oscillator and analyze the onset of bistability under variation of the incident wave. The results presented drastically simplify the analysis nonlinear Maxwell’s equations and, thus, can be instrumental in engineering optical response via bound states in the continuum.
Histopathological effects of modern topical sealants on the liver surface after hepatectomy: an experimental swine study
Authors: Fonouni Hamidreza , Khajeh Elias , Ghamarnejad Omid , Kashfi Arash , Aydogdu Emre , Majlesara Ali , Mohammadi Sara , Gharabaghi Negin , Konstantinidis Lukas , Longerich Thomas , Mehrabi Arianeb , Kulu Yakup 
Published: May 2019

AbstractThe present study aimed to determine the impact of different sealant materials on histopathological changes to the liver surface after liver resection. Thirty-six landrace pigs underwent left anatomical hemihepatectomy and were assigned to a histopathological control group (HPC, n = 9) with no bleeding control, a clinically simulated control group (CSC, n = 9) with no sealant but bipolar cauterization and oversewing of the liver surface, and two treatment groups (n = 9 each) with a collagen-based sealant (CBS) or a fibrinogen-based sealant (FBS) on resection surface. After postoperative day 6, tissue samples were histologically examined. There were no significant differences in preoperative parameters between the groups. Fibrin production was higher in sealant groups compared with the HPC and CSC groups (both p < 0.001). Hepatocellular regeneration in sealant groups was higher than in both control groups. A significantly higher regeneration was seen in the FBS group. Use of sealants increased the degree of fibrin exudation at the resection plane. Increased hepatocellular necrosis was seen in the CBS group compared with the FBS group. The posthepatectomy hepatocellular regeneration rate was higher in the FBS group compared with the CBS group. Randomized studies are needed to assess the impact of sealants on posthepatectomy liver regeneration in the clinical setting.
Lightsheet localization microscopy enables fast, large-scale, and three-dimensional super-resolution imaging
Authors: Lu Chieh-Han , Tang Wei-Chun , Liu Yen-Ting , Chang Shu-Wei , Wu Frances Camille M. , Chen Chin-Yi , Tsai Yun-Chi , Yang Shun-Min , Kuo Chiung-Wen , Okada Yasushi , Hwu Yeu-Kuang , Chen Peilin , Chen Bi-Chang 
Published: May 2019

AbstractRecent advances in super-resolution microscopy allow the localization of single molecules within individual cells but not within multiple whole cells due to weak signals from single molecules and slow acquisition process for point accumulation to reconstruct super-resolution images. Here, we report a fast, large-scale, and three-dimensional super-resolution fluorescence microscope based on single-wavelength Bessel lightsheet to selectively illuminate spontaneous blinking fluorophores tagged to the proteins of interest in space. Critical parameters such as labeling density, excitation power, and exposure time were systematically optimized resulting in a maximum imaging speed of 2.7 × 104 µm3 s−1. Fourier ring correlation analysis revealed a reconstructed image with a lateral resolution of ~75 nm through the accumulation of 250 image volumes on immobilized samples within 15 min. Hence, the designed system could open new insights into the discovery of complex biological structures and live 3D localization imaging.
Sumoylation regulates the stability and nuclease activity of Saccharomyces cerevisiae Dna2
Authors: Ranjha Lepakshi , Levikova Maryna , Altmannova Veronika , Krejci Lumir , Cejka Petr 
Published: May 2019

AbstractDna2 is an essential nuclease-helicase that acts in several distinct DNA metabolic pathways including DNA replication and recombination. To balance these functions and prevent unscheduled DNA degradation, Dna2 activities must be regulated. Here we show that Saccharomyces cerevisiae Dna2 function is controlled by sumoylation. We map the sumoylation sites to the N-terminal regulatory domain of Dna2 and show that in vitro sumoylation of recombinant Dna2 impairs its nuclease but not helicase activity. In cells, the total levels of the non-sumoylatable Dna2 variant are elevated. However, non-sumoylatable Dna2 shows impaired nuclear localization and reduced recruitment to foci upon DNA damage. Non-sumoylatable Dna2 reduces the rate of DNA end resection, as well as impedes cell growth and cell cycle progression through S phase. Taken together, these findings show that in addition to Dna2 phosphorylation described previously, Dna2 sumoylation is required for the homeostasis of the Dna2 protein function to promote genome stability.
Extreme risk induced by communities in interdependent networks
Authors: Sun Jiachen , Zhang Rui , Feng Ling , Monterola Christopher , Ma Xiao , Rozenblat Céline , Stanley H. Eugene , Podobnik Boris , Hu Yanqing 
Published: May 2019

AbstractNetworks in nature not only depend on each other but also have internal community structures, such as infrastructure networks with links within and across geographic regions. The communities play an important role when the networks undergo localized failures in specific regions, for instance when natural disasters or economic sanctions disrupt a local community region and consequently influence the whole system. How a disruption in one community propagates through the entire system is a crucial, but still open, question. Here we find that the community structure embeds extreme risk: weakening the community strength could abruptly drive the system to a precarious state. Examining the business-flight network among cities as a proxy for the world economy, we find this real coupled system evolving towards the extreme vulnerable phase due to ongoing globalization. This shows the community risk indeed exists in real world networks and deserves more attention from the scientific community.
Single plasmon hot carrier generation in metallic nanoparticles
Authors: Román Castellanos Lara , Hess Ortwin , Lischner Johannes 
Published: May 2019

AbstractHot carriers produced from the decay of localized surface plasmons in metallic nanoparticles are intensely studied because of their optoelectronic, photovoltaic and photocatalytic applications. From a classical perspective, plasmons are coherent oscillations of the electrons in the nanoparticle, but their quantized nature comes to the fore in the novel field of quantum plasmonics. In this work, we introduce a quantum-mechanical material-specific approach for describing the decay of single quantized plasmons into hot electrons and holes. We find that hot carrier generation rates differ significantly from semiclassical predictions. We also investigate the decay of excitations without plasmonic character and show that their hot carrier rates are comparable to those from the decay of plasmonic excitations for small nanoparticles. Our study provides a rigorous and general foundation for further development of plasmonic hot carrier studies in the plasmonic regime required for the design of ultrasmall devices.