bluuebunny/crossref_metadata_2025_split huggingface dataset:
Solution-processed perovskite light emitting diodes with efficiency exceeding 15% through additive-controlled nanostructure tailoring
Authors: Ban Muyang , Zou Yatao , Rivett Jasmine P. H. , Yang Yingguo , Thomas Tudor H. , Tan Yeshu , Song Tao , Gao Xingyu , Credgington Dan , Deschler Felix , Sirringhaus Henning , Sun Baoquan 
Published: September 2018

AbstractOrganometal halide perovskites (OHP) are promising materials for low-cost, high-efficiency light-emitting diodes. In films with a distribution of two-dimensional OHP nanosheets and small three-dimensional nanocrystals, an energy funnel can be realized that concentrates the excitations in highly efficient radiative recombination centers. However, this energy funnel is likely to contain inefficient pathways as the size distribution of nanocrystals, the phase separation between the OHP and the organic phase. Here, we demonstrate that the OHP crystallite distribution and phase separation can be precisely controlled by adding a molecule that suppresses crystallization of the organic phase. We use these improved material properties to achieve OHP light-emitting diodes with an external quantum efficiency of 15.5%. Our results demonstrate that through the addition of judiciously selected molecular additives, sufficient carrier confinement with first-order recombination characteristics, and efficient suppression of non-radiative recombination can be achieved while retaining efficient charge transport characteristics.
Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis
Authors: Tang Ning , Shahzad Zaigham , Lonjon Fabien , Loudet Olivier , Vailleau Fabienne , Maurel Christophe 
Published: September 2018

AbstractSoil water uptake by roots is a key component of plant performance and adaptation to adverse environments. Here, we use a genome-wide association analysis to identify the XYLEM NAC DOMAIN 1 (XND1) transcription factor as a negative regulator of Arabidopsis root hydraulic conductivity (Lpr). The distinct functionalities of a series of natural XND1 variants and a single nucleotide polymorphism that determines XND1 translation efficiency demonstrate the significance of XND1 natural variation at species-wide level. Phenotyping of xnd1 mutants and natural XND1 variants show that XND1 modulates Lpr through action on xylem formation and potential indirect effects on aquaporin function and that it diminishes drought stress tolerance. XND1 also mediates the inhibition of xylem formation by the bacterial elicitor flagellin and counteracts plant infection by the root pathogen Ralstonia solanacearum. Thus, genetic variation at XND1, and xylem differentiation contribute to resolving the major trade-off between abiotic and biotic stress resistance in Arabidopsis.
Electrical conductivity and magnetic dynamos in magma oceans of Super-Earths
Authors: Soubiran François , Militzer Burkhard 
Published: September 2018

AbstractSuper-Earths are extremely common among the numerous exoplanets that have been discovered. The high pressures and temperatures in their interiors are likely to lead to long-lived magma oceans. If their electrical conductivity is sufficiently high, the mantles of Super-Earth would generate their own magnetic fields. With ab initio simulations, we show that upon melting, the behavior of typical mantle silicates changes from semi-conducting to semi-metallic. The electrical conductivity increases and the optical properties are substantially modified. Melting could thus be detected with high-precision reflectivity measurements during the short time scales of shock experiments. We estimate the electrical conductivity of mantle silicates to be of the order of 100 Ω−1 cm−1, which implies that a magnetic dynamo process would develop in the magma oceans of Super-Earths if their convective velocities have typical values of 1 mm/s or higher. We predict exoplanets with rotation periods longer than 2 days to have multipolar magnetic fields.
Spatiotemporal dynamics of homologous recombination repair at single collapsed replication forks
Authors: Whelan Donna R. , Lee Wei Ting C. , Yin Yandong , Ofri Dylan M. , Bermudez-Hernandez Keria , Keegan Sarah , Fenyo David , Rothenberg Eli 
Published: September 2018

AbstractHomologous recombination (HR) is a crucial pathway for the repair of DNA double-strand breaks. BRCA1/2 breast cancer proteins are key players in HR via their mediation of RAD51 nucleofilament formation and function; however, their individual roles and crosstalk in vivo are unknown. Here we use super-resolution (SR) imaging to map the spatiotemporal kinetics of HR proteins, revealing the interdependent relationships that govern the dynamic interplay and progression of repair events. We show that initial single-stranded DNA/RAD51 nucleofilament formation is mediated by RAD52 or, in the absence of RAD52, by BRCA2. In contrast, only BRCA2 can orchestrate later RAD51 recombinase activity during homology search and resolution. Furthermore, we establish that upstream BRCA1 activity is critical for BRCA2 function. Our analyses reveal the underlying epistatic landscape of RAD51 functional dependence on RAD52, BRCA1, and BRCA2 during HR and explain the phenotypic similarity of diseases associated with mutations in these proteins.
Structure of Type-I Mycobacterium tuberculosis fatty acid synthase at 3.3 Å resolution
Authors: Elad Nadav , Baron Szilvia , Peleg Yoav , Albeck Shira , Grunwald Jacob , Raviv Gal , Shakked Zippora , Zimhony Oren , Diskin Ron 
Published: September 2018

AbstractTuberculosis (TB) is a devastating and rapidly spreading disease caused by Mycobacterium tuberculosis (Mtb). Therapy requires prolonged treatment with a combination of multiple agents and interruptions in the treatment regimen result in emergence and spread of multi-drug resistant (MDR) Mtb strains. MDR Mtb poses a significant global health problem, calling for urgent development of novel drugs to combat TB. Here, we report the 3.3 Å resolution structure of the ~2 MDa type-I fatty acid synthase (FAS-I) from Mtb, determined by single particle cryo-EM. Mtb FAS-I is an essential enzymatic complex that contributes to the virulence of Mtb, and thus a prime target for anti-TB drugs. The structural information for Mtb FAS-I we have obtained enables computer-based drug discovery approaches, and the resolution achieved by cryo-EM is sufficient for elucidating inhibition mechanisms by putative small molecular weight inhibitors.
Retained free energy as a driving force for phase transformation during rapid solidification of stainless steel alloys in microgravity
Authors: Matson Douglas M. 
Published: September 2018

AbstractTernary Fe-Cr-Ni stainless steel alloys often exhibit a multi-step transformation known as double recalescence where primary ferrite converts to austenite during rapid solidification processes such as casting and welding. In addition to the volume free energy associated with undercooling between the phases, the free energy driving the transformation comes from two additional sources that are retained within the metastable solid—one from the primary phase undercooling and one from melt shear. A new physical model is proposed based on accumulation of defects, such as dislocations or tilt boundaries, and lattice strain. A dimensionless analysis technique shows that the free energy associated with metastable solidification is conserved and the contribution from melt shear can be predicted based on a modification of the Read-Shockley dislocation energy equation. With these additional terms the incubation time between nucleation events becomes inversely proportional to the total free energy squared for bulk diffusion and cubed for grain boundary diffusion mechanisms. In the case of the ferrous alloys studied, the grain boundary mechanism provides a better fit and when the model is applied the delay time behavior collapses to a single master-curve for the entire alloy family.
Commercial scale membrane distillation for solar desalination
Authors: Zaragoza G. , Andrés-Mañas J. A , Ruiz-Aguirre A. 
Published: September 2018

AbstractMembrane distillation is an attractive technology for solar-powered decentralized desalination that has not yet reached commercial breakthrough on a large scale. The main barriers are energy consumption and cost. Since the latter are mostly related to the former, thermal energy efficiency is key to assessing the potential of the different available membrane distillation systems at a commercial scale. As discussed here, existing membrane distillation technologies use mostly flat sheet membranes in plate and frame and spiral-wound modules. Modules based on hollow fibre membranes are also considered, as well as the concept of multi-effect vacuum membrane distillation for improved heat recovery. The heat efficiency of each system is analysed based on available experimental results. Better internal heat recovery and capacity for upscaling are found to be important elements of distinction which make multi-channelled spiral-wound modules working in air-gap configuration stand out currently, with the lowest heat consumption of all large scale modules. Potential for improvement of this and other technologies is also discussed, and an estimation based on the associated costs for solar energy is used for establishing boundary conditions towards the implementation of membrane distillation for solar desalination.
Genome guided investigation of antibiotics producing actinomycetales strain isolated from a Macau mangrove ecosystem
Authors: Hu Dini , Chen Yan , Sun Chenghang , Jin Tao , Fan Guangyi , Liao Qiwen , Mok Kai Meng , Lee Ming-Yuen Simon 
Published: September 2018

AbstractActinomycetes are a heterogeneous group of gram positive filamentous bacteria that have been found to produce a wide range of valuable bioactive secondary metabolites, particularly antibiotics. Moreover, actinomycetes isolated from unexplored environments show an unprecedented potential to generate novel active compounds. Hence, in order to search for novel antibiotics, we isolated and characterized actinomycetes strains from plant samples collected from a mangrove in Macau. Within the class of actinobacteria, fourteen actinomycetes isolates have been isolated and identified belonging to the genus of Streptomyces, Micromonospora, Mycobacterium, Brevibacterium, Curtobacterium and Kineococcus based on their 16S rRNA sequences. Further whole genome sequencing analysis of one of the isolated Streptomyces sp., which presented 99.13% sequence similarity with Streptomyces parvulus strain 2297, showed that it consisted of 118 scaffolds, 8,348,559 base pairs and had a 72.28% G + C content. In addition, genome-mining revealed that the isolated Streptomyces sp. contains 109 gene clusters responsible for the biosynthesis of known and/or novel secondary metabolites, including different types of terpene, T1pks, T2pks, T3pks, Nrps, indole, siderophore, bacteriocin, thiopeptide, phosphonate, lanthipeptide, ectoine, butyrolactone, T3pks-Nrps, and T1pks-Nrps. Meanwhile, the small molecules present in ethyl acetate extract of the fermentation broth of this strain were analyzed by LC-MS. Predicted secondary metabolites of melanin and desferrioxamine B were identified and both of them were firstly found to be produced by the Streptomyces parvulus strain. Our study highlights that combining genome mining is an efficient method to detect potentially promising natural products from mangrove-derived actinomycetes.
Crystal structures of multicopper oxidase CueO G304K mutant: structural basis of the increased laccase activity
Authors: Wang Hanqian , Liu Xiaoqing , Zhao Jintong , Yue Qingxia , Yan Yuhua , Gao Zengqiang , Dong Yuhui , Zhang Zhiyong , Fan Yunliu , Tian Jian , Wu Ningfeng , Gong Yong 
Published: September 2018

AbstractThe multicopper oxidase CueO is involved in copper homeostasis and copper (Cu) tolerance in Escherichia coli. The laccase activity of CueO G304K mutant is higher than wild-type CueO. To explain this increase in activity, we solved the crystal structure of G304K mutant at 1.49 Å. Compared with wild-type CueO, the G304K mutant showed dramatic conformational changes in methionine-rich helix and the relative regulatory loop (R-loop). We further solved the structure of Cu-soaked enzyme, and found that the addition of Cu ions induced further conformational changes in the R-loop and methionine-rich helix as a result of the new Cu-binding sites on the enzyme’s surface. We propose a mechanism for the enhanced laccase activity of the G304K mutant, where movements of the R-loop combined with the changes of the methionine-rich region uncover the T1 Cu site allowing greater access of the substrate. Two of the G304K double mutants showed the enhanced or decreased laccase activity, providing further evidence for the interaction between the R-loop and the methionine-rich region. The cuprous oxidase activity of these mutants was about 20% that of wild-type CueO. These structural features of the G304K mutant provide clues for designing specific substrate-binding mutants in the biotechnological applications.
Tailoring diamond’s optical properties via direct femtosecond laser nanostructuring
Authors: Martínez-Calderon M. , Azkona J. J. , Casquero N. , Rodríguez A. , Domke Matthias , Gómez-Aranzadi M. , Olaizola S. M. , Granados E. 
Published: September 2018

AbstractWe demonstrate a rapid, accurate, and convenient method for tailoring the optical properties of diamond surfaces by employing laser induced periodic surface structuring (LIPSSs). The characteristics of the fabricated photonic surfaces were adjusted by tuning the laser wavelength, number of impinging pulses, angle of incidence and polarization state. Using Finite Difference Time Domain (FDTD) modeling, the optical transmissivity and bandwidth was calculated for each fabricated LIPSSs morphology. The highest transmission of ~99.5% was obtained in the near-IR for LIPSSs structures with aspect ratios of the order of ~0.65. The present technique enabled us to identify the main laser parameters involved in the machining process, and to control it with a high degree of accuracy in terms of structure periodicity, morphology and aspect ratio. We also demonstrate and study the conditions for fabricating spatially coherent nanostructures over large areas maintaining a high degree of nanostructure repeatability and optical performance. While our experimental demonstrations have been mainly focused on diamond anti-reflection coatings and gratings, the technique can be easily extended to other materials and applications, such as integrated photonic devices, high power diamond optics, or the construction of photonic surfaces with tailored characteristics in general.
Malic Enzyme 1 (ME1) is pro-oncogenic in ApcMin/+ mice
Authors: Fernandes Lorenzo M. , Al-Dwairi Ahmed , Simmen Rosalia C. M. , Marji Meera , Brown Dustin M. , Jewell Sarah W. , Simmen Frank A. 
Published: September 2018

AbstractCytosolic Malic Enzyme (ME1) provides reduced NADP for anabolism and maintenance of redox status. To examine the role of ME1 in tumor genesis of the gastrointestinal tract, we crossed mice having augmented intestinal epithelial expression of ME1 (ME1-Tg mice) with ApcMin/+ mice to obtain male ApcMin/+/ME1-Tg mice. ME1 protein levels were significantly greater within gut epithelium and adenomas of male ApcMin/+/ME1-Tg than ApcMin/+ mice. Male ApcMin/+/ME1-Tg mice had larger and greater numbers of adenomas in the small intestine (jejunum and ileum) than male ApcMin/+ mice. Male ApcMin/+/ME1-Tg mice exhibited greater small intestine crypt depth and villus length in non-adenoma regions, correspondent with increased KLF9 protein abundance in crypts and lamina propria. Small intestines of male ApcMin/+/ME1-Tg mice also had enhanced levels of Sp5 mRNA, suggesting Wnt/β-catenin pathway activation. A small molecule inhibitor of ME1 suppressed growth of human CRC cells in vitro, but had little effect on normal rat intestinal epithelial cells. Targeting of ME1 may add to the armentarium of therapies for cancers of the gastrointestinal tract.
Skin α-synuclein deposits differ in clinical variants of synucleinopathy: an in vivo study
Authors: Donadio V. , Incensi A. , El-Agnaf O. , Rizzo G. , Vaikath N. , Del Sorbo F. , Scaglione C. , Capellari S. , Elia A. , Stanzani Maserati M. , Pantieri R. , Liguori R. 
Published: September 2018

AbstractWe aimed to characterize in vivo α-synuclein (α-syn) aggregates in skin nerves to ascertain: 1) the optimal marker to identify them; 2) possible differences between synucleinopathies that may justify the clinical variability. We studied multiple skin nerve α-syn deposits in 44 patients with synucleinopathy: 15 idiopathic Parkinson’s disease (IPD), 12 dementia with Lewy Bodies (DLB), 5 pure autonomic failure (PAF) and 12 multiple system atrophy (MSA). Ten healthy subjects were used as controls. Antibodies against native α-syn, C-terminal α-syn epitopes such as phosphorylation at serine 129 (p-syn) and to conformation-specific for α-syn mature amyloid fibrils (syn-F1) were used. We found that p-syn showed the highest sensitivity and specificity in disclosing skin α-syn deposits. In MSA abnormal deposits were only found in somatic fibers mainly at distal sites differently from PAF, IPD and DLB displaying α-syn deposits in autonomic fibers mainly at proximal sites. PAF and DLB showed the highest p-syn load with a widespread involvement of autonomic skin nerve fibers. In conclusion: 1) p-syn in skin nerves was the optimal marker for the in vivo diagnosis of synucleinopathies; 2) the localization and load differences of aggregates may help to identify specific diagnostic traits and support a different pathogenesis among synucleinopathies.
Abnormal Stop Band Behavior Induced by Rotational Resonance in Flexural Metamaterial
Authors: Lee Sung Won , Oh Joo Hwan 
Published: September 2018

AbstractThis paper investigates abnormal stop band behavior of resonance-based flexural elastic metamaterials under the rotational resonance motion. Due to the unique physics of flexural waves, we found that the stop band generated by the rotational resonance motion exhibits peculiar behavior which are quite different from general belief – it is shown that the negativity due to the rotational resonance does not provide any stop bands and the stop band generation due to the rotational resonance is governed by totally different band gap condition. To explain the peculiar behavior, a discrete Timoshenko beam model with both effective mass and rotational inertia as independent variables is introduced, and the wave behaviors of resonance-based flexural elastic metamaterial are precisely and fully described. The unique band gap condition, including the peculiar behavior, is derived with numerical validations. We expect our new model can provide a strong background for various flexural elastic metamaterials which can be effectively applied in various vibration devices.
Rapid Fabrication of Microporous BaTiO3/PDMS Nanocomposites for Triboelectric Nanogenerators through One-step Microwave Irradiation
Authors: Jang Shin , Oh Je Hoon 
Published: September 2018

AbstractEven though porous elastomers and elastomeric nanocomposites have shown many advantages for triboelectric nanogenerators (TENGs), their fabrication techniques are relatively complicated, inefficient, and time-consuming. In this work, we introduced a simple, efficient and rapid concept to fabricate porous polydimethylsiloxane (PDMS) nanocomposites. PDMS nanocomposites with various porous structure were produced within a few minutes through just one-step microwave irradiation without any post-processing. Three solvents with different boiling points were selected as sacrificial materials to control porous structure. To fabricate nanocomposites, BaTiO3 (BT) nanoparticles were mixed into the uncured PDMS and sacrificial solvent mixture. Additionally, Ni nanoparticles were also used to understand the effect of embedded material’s property on porous structure. The porous BT/PDMS nanocomposites fabricated via microwave irradiation greatly enhanced the electrical performance of TENGs as compared to a pure solid elastomer. The present study provides a simple, rapid and inexpensive approach for fabricating TENGs based on porous elastomeric nanocomposites.
Simple separation of good quality bovine oocytes using a microfluidic device
Authors: Iwasaki Wataru , Yamanaka Kenichi , Sugiyama Daisuke , Teshima Yuki , Briones-Nagata Maria Portia , Maeki Masatoshi , Yamashita Kenichi , Takahashi Masashi , Miyazaki Masaya 
Published: September 2018

AbstractWe fabricated a simple microfluidic device for separation of bovine oocytes based on the oocyte quality to improve the conception rate of in vitro fertilization (IVF) by using good quality oocytes. The microfluidic device separates oocytes based on sedimentation rate differences in a sucrose buffer, which is dependent on oocyte quality. The microfluidic device has a 700 µm width, 1 mm height, and 10 mm long separation channel. Oocytes were injected from the upper half of the separation channel, and they flowed while sinking. The outlets of the separation channel were divided into upper and lower chambers. Good quality oocytes settled faster than poor quality oocytes in sucrose buffer; therefore, good quality oocytes were collected from the lower outlet. We performed IVF after the microfluidic separation of oocytes. The developmental rate to blastocysts of oocytes collected from the lower outlet was significantly higher than those collected from the upper outlet (36.0% vs. 14.1%). This result was comparable to that in the BCB staining method performed as a comparison method (BCB+ : 35.7%, BCB−: 15.4%). These findings indicate that our microfluidic device could be applied to oocyte separation and contribute to improvement of in vitro embryo production system.
Comparative assessment of autochthonous bacterial and fungal communities and microbial biomarkers of polluted agricultural soils of the Terra dei Fuochi
Authors: Ventorino Valeria , Pascale Alberto , Adamo Paola , Rocco Claudia , Fiorentino Nunzio , Mori Mauro , Faraco Vincenza , Pepe Olimpia , Fagnano Massimo 
Published: September 2018

AbstractOrganic and inorganic xenobiotic compounds can affect the potential ecological function of the soil, altering its biodiversity. Therefore, the response of microbial communities to environmental pollution is a critical issue in soil ecology. Here, a high-throughput sequencing approach was used to investigate the indigenous bacterial and fungal community structure as well as the impact of pollutants on their diversity and richness in contaminated and noncontaminated soils of a National Interest Priority Site of Campania Region (Italy) called “Terra dei Fuochi”. The microbial populations shifted in the polluted soils via their mechanism of adaptation to contamination, establishing a new balance among prokaryotic and eukaryotic populations. Statistical analyses showed that the indigenous microbial communities were most strongly affected by contamination rather than by site of origin. Overabundant taxa and Actinobacteria were identified as sensitive biomarkers for assessing soil pollution and could provide general information on the health of the environment. This study has important implications for microbial ecology in contaminated environments, increasing our knowledge of the capacity of natural ecosystems to develop microbiota adapted to polluted soil in sites with high agricultural potential and providing a possible approach for modeling pollution indicators for bioremediation purposes.