bluuebunny/crossref_metadata_2025_split huggingface dataset:
Sedimentary environment and depositional evolution of the Mesoproterozoic Bingmagou Formation on the southern margin of the North China Craton
Authors: Yue Liang , Liu ZiLiang , Ma Yongsheng 
Published: May 2018

AbstractThe Precambrian sedimentary strata on the southern margin of the North China Craton are well developed and widely exposed, making the region ideal for the study of depositional processes. However, because of the length of the depositional history and the lack of biogenic criteria, interpretations of the sedimentary environments of the Precambrian strata are often based on the tectonic background, geographical environment, rock type and sedimentary structures, resulting in controversies in the literature. In this study of the Bingmagou Formation in the Ruyang Group on the southern margin of the North China Craton, analysis of petrologic features, palaeocurrents and sedimentary facies is combined with regional correlation of relevant strata and the reconstruction of ancient landforms to explain the depositional environments and environmental transitions. Dominated by marine deposits on the southern margin of the North China Craton, the sedimentary strata of the Ruyang Group unconformably overlie the Archean crystalline basement or Proterozoic Xionger Group. As the lowermost unit of the Ruyang Group, the Bingmagou Formation, which was depositionally controlled by topography and faults and received abundant detrital material, is a highly distinctive set of sedimentary strata and represents an environmental transition from alluvial fan to sandy coast.
Alcohol use effects on adolescent brain development revealed by simultaneously removing confounding factors, identifying morphometric patterns, and classifying individuals
Authors: Park Sang Hyun , Zhang Yong , Kwon Dongjin , Zhao Qingyu , Zahr Natalie M. , Pfefferbaum Adolf , Sullivan Edith V. , Pohl Kilian M. 
Published: May 2018

AbstractGroup analysis of brain magnetic resonance imaging (MRI) metrics frequently employs generalized additive models (GAM) to remove contributions of confounding factors before identifying cohort specific characteristics. For example, the National Consortium on Alcohol and NeuroDevelopment in Adolescence (NCANDA) used such an approach to identify effects of alcohol misuse on the developing brain. Here, we hypothesized that considering confounding factors before group analysis removes information relevant for distinguishing adolescents with drinking history from those without. To test this hypothesis, we introduce a machine-learning model that identifies cohort-specific, neuromorphometric patterns by simultaneously training a GAM and generic classifier on macrostructural MRI and microstructural diffusion tensor imaging (DTI) metrics and compare it to more traditional group analysis and machine-learning approaches. Using a baseline NCANDA MR dataset (N = 705), the proposed machine learning approach identified a pattern of eight brain regions unique to adolescents who misuse alcohol. Classifying high-drinking adolescents was more accurate with that pattern than using regions identified with alternative approaches. The findings of the joint model approach thus were (1) impartial to confounding factors; (2) relevant to drinking behaviors; and (3) in concurrence with the alcohol literature.
Blockade of HMGB1 Attenuates Diabetic Nephropathy in Mice
Authors: Chen Xiaochen , Ma Jin , Kwan Tony , Stribos Elisabeth G. D. , Messchendorp A. Lianne , Loh Yik W. , Wang Xiaoyu , Paul Moumita , Cunningham Eithne C. , Habib Miriam , Alexander Ian E. , Sharland Alexandra F. , Chadban Steven J. , Wu Huiling 
Published: May 2018

AbstractActivation of TLR2 or TLR4 by endogenous ligands such as high mobility group box 1 (HMGB1) may mediate inflammation causing diabetic kidney injury. We determined whether blockade of HMGB1 signaling by: (1) supra-physiological production of endogenous secretory Receptor for Advanced Glycation End-products (esRAGE), a receptor for HMGB1; (2) administration of HMGB1 A Box, a specific competitive antagonist, would inhibit development of streptozotocin induced diabetic nephropathy (DN). Wild-type diabetic mice developed albuminuria, glomerular injuries, interstitial fibrosis and renal inflammation. Using an adeno-associated virus vector, systemic over-expression of esRAGE afforded significant protection from all parameters. No protection was achieved by a control vector which expressed human serum albumin. Administration of A Box was similarly protective against development of DN. To determine the mechanism(s) of protection, we found that whilst deficiency of TLR2, TLR4 or RAGE afforded partial protection from development of DN, over-expression of esRAGE provided additional protection in TLR2−/−, modest protection against podocyte damage only in TLR4−/− and no protection in RAGE−/− diabetic mice, suggesting the protection provided by esRAGE was primarily through interruption of RAGE and TLR4 pathways. We conclude that strategies to block the interaction between HMGB1 and its receptors may be effective in preventing the development of DN.
Oleuropein aglycone stabilizes the monomeric α-synuclein and favours the growth of non-toxic aggregates
Authors: Palazzi Luana , Bruzzone Elena , Bisello Giovanni , Leri Manuela , Stefani Massimo , Bucciantini Monica , Polverino de Laureto Patrizia 
Published: May 2018

Abstractα-synuclein plays a key role in the pathogenesis of Parkinson’s disease (PD); its deposits are found as amyloid fibrils in Lewy bodies and Lewy neurites, the histopathological hallmarks of PD. Amyloid fibrillation is a progressive polymerization path starting from peptide/protein misfolding and proceeding through the transient growth of oligomeric intermediates widely considered as the most toxic species. Consequently, a promising approach of intervention against PD might be preventing α-synuclein build-up, misfolding and aggregation. A possible strategy involves the use of small molecules able to slow down the aggregation process or to alter oligomer conformation favouring the growth of non-pathogenic species. Here, we show that oleuropein aglycone (OleA), the main olive oil polyphenol, exhibits anti-amyloidogenic powerin vitroby interacting with, and stabilizing, α-synuclein monomers thus hampering the growth of on-pathway oligomers and favouring the growth of stable and harmless aggregates with no tendency to evolve into other cytotoxic amyloids. We investigated the molecular basis of such interference by both biophysical techniques and limited proteolysis; aggregate morphology was monitored by electron microscopy. We also found that OleA reduces the cytotoxicity of α-synuclein aggregates by hindering their binding to cell membrane components and preventing the resulting oxidative damage to cells.
Evaluation of psychological stress in confined environments using salivary, skin, and facial image parameters
Authors: Egawa Mariko , Haze Shinichiro , Gozu Yoko , Hosoi Junichi , Onodera Tomoko , Tojo Yosuke , Katsuyama Masako , Hara Yusuke , Katagiri Chika , Inoue Natsuhiko , Furukawa Satoshi , Suzuki Go 
Published: May 2018

AbstractDetecting the influence of psychological stress is particularly important in prolonged space missions. In this study, we determined potential markers of psychological stress in a confined environment. We examined 23 Japanese subjects staying for 2 weeks in a confined facility at Tsukuba Space Center, measuring salivary, skin, and facial image parameters. Saliva was collected at four points in a single day to detect diurnal variation. Increases in salivary cortisol were detected after waking up on the 4th and 11th days, and at 15:30 on the 1st and in the second half of the stay. Transepidermal water loss (TEWL) and sebum content of the skin were higher compared with outside the facility on the 4th and 1st days respectively. Increased IL-1β in the stripped stratum corneum was observed on the 14th day, and 7 days after leaving. Differences in facial expression symmetry at the time of facial expression changes were observed on 11th and 14th days. Thus, we detected a transition of psychological stress using salivary cortisol profiles and skin physiological parameters. The results also suggested that IL-1β in the stripped stratum corneum and facial expression symmetry are possible novel markers for conveniently detecting psychological stress.
Leucine/glutamine and v-ATPase/lysosomal acidification via mTORC1 activation are required for position-dependent regeneration
Authors: Takayama Kazuya , Muto Akihiko , Kikuchi Yutaka 
Published: May 2018

AbstractIn animal regeneration, control of position-dependent cell proliferation is crucial for the complete restoration of patterned appendages in terms of both, shape and size. However, detailed mechanisms of this process are largely unknown. In this study, we identified leucine/glutamine and v-ATPase/lysosomal acidification, via mechanistic target of rapamycin complex 1 (mTORC1) activation, as effectors of amputation plane-dependent zebrafish caudal fin regeneration. mTORC1 activation, which functions in cell proliferation, was regulated by lysosomal acidification possibly via v-ATPase activity at 3 h post amputation (hpa). Inhibition of lysosomal acidification resulted in reduced growth factor-related gene expression and suppression of blastema formation at 24 and 48 hpa, respectively. Along the proximal-distal axis, position-dependent lysosomal acidification and mTORC1 activation were observed from 3 hpa. We also report that Slc7a5 (L-type amino acid transporter), whose gene expression is position-dependent, is necessary for mTORC1 activation upstream of lysosomal acidification during fin regeneration. Furthermore, treatment with leucine and glutamine, for both proximal and distal fin stumps, led to an up-regulation in cell proliferation via mTORC1 activation, indicating that leucine/glutamine signaling possesses the ability to change the position-dependent regeneration. Our findings reveal that leucine/glutamine and v-ATPase/lysosomal acidification via mTORC1 activation are required for position-dependent zebrafish fin regeneration.
Amblyopia, Strabismus and Refractive Errors in Congenital Ptosis: a systematic review and meta-analysis
Authors: Wang Yijie , Xu Yufeng , Liu Xi , Lou Lixia , Ye Juan 
Published: May 2018

AbstractCongenital ptosis may be associated with abnormalities of visual development and function, including amblyopia, strabismus and refractive errors. However, the prevalence estimates of these abnormalities vary widely. We performed a systematic review and meta-analysis to estimate the prevalence of amblyopia, strabismus and refractive errors in congenital ptosis. Cochrane, Pubmed, Medline, Embase, and Web of Science were searched by July 2017. We used random/fixed effects models based on a proportion approach to estimate the prevalence. Heterogeneity would be considered signifcant if the p values less than 0.1 and/or I2 greater than 50%. Subgroup analyses, meta-regression analyses and sensitivity analyses were utilized to explore the potential sources of it. A total of 24 studies selected from 3,633 references were included. The highest prevalence was revealed for myopia with 30.2% (95%CI 3.0–69.8%), followed by 22.7% (95%CI 18.5–27.8%) for amblyopia, 22.2% (95%CI 7.8–63.1%) for astigmatism, 19.6% (95%CI 16.5–23.2%) for strabismus, 17.3% (95% CI 13.1–22.9%) for anisometropia and 4.0% for hyperopia (95%CI 1.8–7.1%). Significant heterogeneity was identified across most estimates. Our findings suggest that amblyopia, strabismus and refractive errors in congenital ptosis are present in much higher percentage. This study highlights the importance of early diagnosis and timely treatment of patients with congenital ptosis.
Fluorescent impurity emitter in toluene and its photon emission properties
Authors: Trinh Cong Tai , Lee Jiwon , Lee Kwang-Geol 
Published: May 2018

AbstractSingle fluorescent emitters like colloidal quantum dots or single molecules are usually prepared in solutions and spin-coated onto cover glasses for studying. Toluene has been a widely used solvent in such studies. Here, we report on a fluorescent impurity emitter contained in toluene and its optical properties. The emission spectra of the single emitters show multiple peaks with the main peak varying from 2.03 eV (610 nm) to 2.14 eV (580 nm) and a red-shifted side peak with an average separation of 167 meV from the main peak. The emitted photons show a strong anti-bunching with a fluorescence lifetime of a few nanoseconds. They show very fast blinking behavior which cannot be properly detected by time-trajectory of photoluminescence intensity. An analysis based on the second-order correlation functions reveals that a three-level model can explain our measurements well and that the blinking transition time ranges only a few tens of microseconds. This single emitter in toluene is clearly distinguished from the fluorescent centers in the cover glass by their respective emission spectra. The single emitters in the cover glass also exhibit fast blinking behavior. These background emitters should be carefully identified and distinguished while studying the single fluorescent emitters.
A novel concept for dynamic adjustment of auditory space
Authors: Lingner A. , Pecka M. , Leibold C. , Grothe B. 
Published: May 2018

AbstractTraditionally, the auditory system is thought to serve reliable sound localization. Stimulus-history driven feedback circuits in the early binaural pathway, however, contradict this canonical concept and raise questions about their functional significance. Here we show that stimulus-history dependent changes in absolute space perception are poorly captured by the traditional labeled-line and hemispheric-difference models of auditory space coding. We therefore developed a new decoding model incorporating recent electrophysiological findings in which sound location is initially computed in both brain hemispheres independently and combined to yield a hemispherically balanced code. This model closely captures the observed absolute localization errors caused by stimulus history, and furthermore predicts a selective dilation and compression of perceptional space. These model predictions are confirmed by improvement and degradation of spatial resolution in human listeners. Thus, dynamic perception of auditory space facilitates focal sound source segregation at the expense of absolute sound localization, questioning existing concepts of spatial hearing.
The Usage of Exon-Exon Splice Junctions for the Detection of Alternative Splicing using the REIDS model
Authors: Van Moerbeke Marijke , Kasim Adetayo , Shkedy Ziv 
Published: May 2018

AbstractAlternative gene splicing is a common phenomenon in which a single gene gives rise to multiple transcript isoforms. The process is strictly guided and involves a multitude of proteins and regulatory complexes. Unfortunately, aberrant splicing events have been linked to genetic disorders. Therefore, understanding mechanisms of alternative splicing regulation and differences in splicing events between diseased and healthy tissues is crucial in advancing personalized medicine and drug developments. We propose a linear mixed model, Random Effects for the Identification of Differential Splicing (REIDS), for the identification of alternative splicing events using Human Transcriptome Arrays (HTA). For each exon, a splicing score is calculated based on two scores, an exon score and an array score. The junction information is used to rank the identified exons from strongly confident to less confident candidates for alternative splicing. The design of junctions was also discussed to highlight the complexity of exon-exon and exon-junction interactions. Based on a list of Rt-PCR validated probe sets, REIDS outperforms AltAnalyze and iGems in the % recall rate.
Short-term increase in discs’ apparent diffusion is associated with pain and mobility improvements after spinal mobilization for low back pain
Authors: Thiry Paul , Reumont François , Brismée Jean-Michel , Dierick Frédéric 
Published: May 2018

AbstractPain perception, trunk mobility and apparent diffusion coefficient (ADC) within all lumbar intervertebral discs (IVDs) were collected before and shortly after posterior-to-anterior (PA) mobilizations in 16 adults with acute low back pain. Using a pragmatic approach, a trained orthopaedic manual physical therapist applied PA mobilizations to the participants’ spine, in accordance with his examination findings. ADCall was computed from diffusion maps as the mean of anterior (ADCant), middle (ADCmid), and posterior (ADCpost) portions of the IVD. After mobilization, pain ratings and trunk mobility were significantly improved and a significant increase in ADCall values was observed. The greatest ADCall changes were observed at the L3-L4 and L4-L5 levels and were mainly explained by changes in ADCant and ADCpost, respectively. No significant changes in ADC were observed at L5-S1 level. The reduction in pain and largest changes in ADC observed at the periphery of the hyperintense IVD region suggest that increased peripheral random motion of water molecules is implicated in the IVD nociceptive response modulation. Additionally, ADC changes were observed at remote IVD anatomical levels that did not coincide with the PA spinal mobilization application level.
Hepatocyte Growth Factor (HGF) Promotes Peripheral Nerve Regeneration by Activating Repair Schwann Cells
Authors: Ko Kyeong Ryang , Lee Junghun , Lee Deokho , Nho Boram , Kim Sunyoung 
Published: May 2018

AbstractDuring the peripheral nerve regeneration process, a variety of neurotrophic factors play roles in nerve repair by acting on neuronal or non-neuronal cells. In this report, we investigated the role(s) of hepatocyte growth factor (HGF) and its receptor, c-met, in peripheral nerve regeneration. When mice were subjected to sciatic nerve injury, the HGF protein level was highly increased at the injured and distal sites. The level of both total and phosphorylated c-met was also highly upregulated, but almost exclusively in Schwann cells (SCs) distal from the injury site. When mice were treated with a c-met inhibitor, PHA-665752, myelin thickness and axon regrowth were decreased indicating that re-myelination was hindered. HGF promoted the migration and proliferation of cultured SCs, and also induced the expression of various genes such as GDNF and LIF, presumably by activating ERK pathways. Furthermore, exogenous supply of HGF around the injury site, by intramuscular injection of a plasmid DNA expressing human HGF, enhanced the myelin thickness and axon diameter in injured nerves. Taken together, our results indicate that HGF and c-met play important roles in Schwann cell-mediated nerve repair, and also that HGF gene transfer may provide a useful tool for treating peripheral neuropathy.
Novel Dual-band Band-Pass Filters Based on Surface Plasmon Polariton-like Propagation Induced by Structural Dispersion of Substrate Integrated Waveguide
Authors: Cselyuszka Norbert , Sakotic Zarko , Kitic Goran , Crnojevic-Bengin Vesna , Jankovic Nikolina 
Published: May 2018

AbstractIn this paper, we present two novel dual-band bandpass filters based on surface plasmon polariton-like (SPP-like) propagation induced by structural dispersion of substrate integrated waveguide (SIW). Both filters are realized as a three-layer SIW where each layer represents a sub-SIW structure with intrinsic effective permittivity that depends on its width and filling dielectric material. The layers are designed to have effective permittivities of opposite signs in certain frequency ranges, which enables SPP-like propagation to occur at their interfaces. Since three layers can provide two distinct SPP-like propagations, the filters exhibit dual-band behaviour. A detailed theoretical and numerical analysis and numerical optimization have been used to design the filters, which were afterwards fabricated using standard printed circuit board technology. The independent choice of geometrical parameters of sub-SIWs and/or the corresponding dielectric materials provide a great freedom to arbitrarily position the passbands in the spectrum, which is a significant advantage of the proposed filters. At the same time, they meet the requirements for low-cost low-profile configuration since they are realized as SIW structures, as well as for excellent in-band characteristics and selectivity which is confirmed by the measurement results.
Phospholipid homeostasis, membrane tenacity and survival of Mtb in lipid rich conditions is determined by MmpL11 function
Authors: Bothra Ankur , Arumugam Prabhakar , Panchal Vipul , Menon Dilip , Srivastava Sonali , Shankaran Deepthi , Nandy Ananya , Jaisinghani Neetika , Singh Archana , Gokhale Rajesh S. , Gandotra Sheetal , Rao Vivek 
Published: May 2018

AbstractThe mycobacterial cell wall is a chemically complex array of molecular entities that dictate the pathogenesis of Mycobacterium tuberculosis. Biosynthesis and maintenance of this dynamic entity in mycobacterial physiology is still poorly understood. Here we demonstrate a requirement for M. tuberculosis MmpL11 in the maintenance of the cell wall architecture and stability in response to surface stress. In the presence of a detergent like Tyloxapol, a mmpL11 deletion mutant suffered from a severe growth attenuation as a result of altered membrane polarity, permeability and severe architectural damages. This mutant failed to tolerate permissible concentrations of cis-fatty acids suggesting its increased sensitivity to surface stress, evident as smaller colonies of the mutant outgrown from lipid rich macrophage cultures. Additionally, loss of MmpL11 led to an altered cellular fatty acid flux in the mutant: reduced incorporation into membrane cardiolipin was associated with an increased flux into the cellular triglyceride pool. This increase in storage lipids like triacyl glycerol (TAG) was associated with the altered metabolic state of higher dormancy-associated gene expression and decreased sensitivity to frontline TB drugs. This study provides a detailed mechanistic insight into the function of mmpL11 in stress adaptation of mycobacteria.
Impact of genetics on third molar agenesis
Authors: Trakinienė Giedrė , Šidlauskas Antanas , Andriuškevičiūtė Irena , Šalomskienė Loreta , Švalkauskienė Vilma , Smailienė Dalia , Trakinis Tomas 
Published: May 2018

AbstractThe purpose of this investigation was to determine the impact of heritability on third molar agenesis in twins. The study sample consisted of 284 same sex twins (172 monozygotic and 112 dizygotic), whose mean ages were 19.7 ± 4.3 and 18.9 ± 4.8 years, respectively. The monozygotic group consisted of 36.3% males and 63.7% females, while the dizygotic group consisted of 50.1% males and 49.9% females. The zygosity of the twins was established using 15 specific DNA markers. The prevalence of third molar agenesis in monozygotic twins was 19.6%, which was higher than in the dizygotic twins group (15.50%) (p = 0.004). In both groups, third molar agenesis was more frequent in the maxilla than in the mandible (p = 0.000). Agenesis of the maxillary third molars was mostly affected by additive genetic factors (62–63%), with the common environment and the specific environment accounting for up to 25% and 13%, respectively. In contrast, agenesis of the lower third molars was associated with a higher additive genetic determination (81–83%), with the specific environment accounting for 17% to 19%. The study’s conclusion is that the formation of the third molars follicle is strongly controlled by additive genetic factors.