bluuebunny/crossref_metadata_2025_split huggingface dataset:
Phenotypic variation in live weight and live-weight changes of lactating Holstein-Friesian cows
Authors: Koenen E. P. C. , Groen A. F. , Gengler N. 
Published: May 2019

AbstractThis study quantified individual phenotypic variation in live weight and live-weight changes during the first three lactations and estimated the effects of age, lactation week and pregnancy on live weight. Data comprised weekly averaged live weight (calculated from daily observations) during 452 lactations of 239 Holstein-Friesian cows. Unadjusted mean live weights were 553 (s.d. 50), 611 (s.d. 55) and 654 (s.d. 57) kg during first, second and third parity, respectively. Estimated effect of growth during parity was 46, 52 and 23 kg for the first three parities. Mean maximum weight loss was 26, 22 and 22 kg for first, second and third parity and variation was large among individuals. Week of lactation when cows had their maximum weight loss ranged from 7 weeks in first lactation to 13 weeks in third lactation. Estimated maximum effect of pregnancy on live weight during the lactation varied from 27 to 59 kg. Phenotypic variance in live weight increased with parity. Repeatabilities of live-weight observations within parity were 0.85 . Across parities, high repeatabilities were found for calving weight and mean live weight but not for parameters associated with maximum weight loss. Correlations between weekly means and mean live weight during the whole of lactation were high. It was concluded that single live-weight observations of heifers are a good measurement of mean live weight during the first three panties.
Pig growth and conformation monitoring using image analysis
Authors: Marchant J. A. , Schofield C. P. , White R. P. 
Published: May 2019

AbstractMachine vision can be used to collect images of pigs and analyse them to identify and measure specific areas and dimensions related to their growth, shape and hence conformation. This information could improve the stockman’s ability to maximize production efficiency and also to monitor health by detecting abnormalities in growth rates. This work introduces fully automated algorithms which find the plan view outline of animals in a normal housing situation, divide the outline into major body components and measure specified dimensions and areas. Special attention is paid to determining whether the results are sufficiently repeatable to be useful in estimating these parameters. Problems in compensating for changes in the optical geometry are outlined and methods proposed to deal with them. The repeatability of the image analysis process coupled with the subsequent signal processing for outlier rejection gives s.e. values on areas of < 0·005 and on linear dimensions of < 0·0025. For example, the plan view area less head and neck (A4) can be used to predict the weight of the group of pigs at 34 kg, 66 kg and 98 kg with standard errors of 0·25 kg, 0·17 kg and 0·39 kg respectively when using manual weighing results to calibrate the system. If an individual pig is weighed once at 75 days (e.g. 34 kg) to calibrate the A4-to-weight relationship, subsequent A4 measurements can be used to predict its weight when 125 days old (approx. 80 kg) to within 1 kg. This matches the accuracy of the manual weighing system used in the trials. The effect of pig gender on the area to weight relationships is not significant (P= 0·074), but there is a small yet significant gender effect with the linear dimensions.
Digestion site and extent of carbohydrate fractions in steers offered by-product diets, as determined by detergent and enzymatic methods
Authors: Taniguchi K. , Zhao Y. , Uchikawa H. , Obitsu T. 
Published: May 2019

AbstractThe objective was to elucidate the influences of two analytical methods, which employed neutral detergent or enzymes, on the digestion of carbohydrate fractions in the rumen and post-rumen of steers. Structural carbohydrates in diets and digesta were directly measured using both procedures and the contents of non-fibre carbohydrates (NFC) and non-fibre non-starch polysaccharides (NFSP) were estimated by subtracting the structural carbohydrates and other components from the organic matter. Carbohydrate sources were Italian ryegrass and rolled barley in the control diet and, in each of other three diets, Italian ryegrass and rolled barley plus either beet pulp, citrus pulp or soya-bean hulls. All diets contained similar proportions of dry matter as crude protein, structural carbohydrates and NFC but the starch proportion of the NFC was different in each diet, as follows: control (0·62), beet pulp (0·48), citrus pulp (0·30) and soya-bean hulls (0·63). Four Holstein steers with ruminal, duodenal and Heal cannulas were offered the four diets in a 4 × 4 Latin-square design. Estimated digestibilities of the structural carbohydrates in the rumen and the whole tract were greater (P < 0·01) when the detergent method was used than when the enzymatic method was used. The maximal difference in the ruminal digestion among the four diets was only 0·05 by the detergent method but 0·17 by the enzymatic method. Conversely, the digestibility of NFC in the rumen, as estimated from the detergent structural carbohydrates was less (P < 0.01) than that estimated from enzymatic structural carbohydrates with no evident differences among the four diets. Starch digestibility in the rumen was extensive for all diets but the ruminal digestibility of NFSP was much lower in the control and soya-bean hull diets, especially when it was estimated using the detergent method. The duodenal flow of microbial protein was greater (P < 0·05) for the beet pulp and citrus pulp diets than for the control. The acetate concentration of the ruminal fluids ranged from 84 for the control diet to 128 mmol/l for the soya-bean hulls diet. The digestion of carbohydrate fractions and the fermentation characteristics in the rumen suggested that the enzymatic method is the more appropriate method for fractionating carbohydrates.
The Normative Power of Secularism. Tunisian Ennahda's Discourse on Religion, Politics, and the State (2011–2016)
Authors: Pfeifer Hanna 
Published: May 2019

AbstractBy critically engaging the literature on the inclusion-moderation hypothesis, this paper seeks to show how the normative structure of secularism constitutes, enables, and restricts the discursive space in which Islamists can justify political action. It analyzes changes in Tunisian Ennahda's discourse (2011–2016) as an attempt to navigate between standards of recognition imposed on them by the normative power of secularism on the one hand, and what they can convincingly integrate into their own platform on the other hand.
The 3‐D Velocity Models and Seismicity Highlight Forearc Deformation Due to Subducting Features (Central Vanuatu)
Authors: Foix O. , Crawford W. C. , Koulakov I. , Baillard C. , Régnier M. , Pelletier B. , Garaebiti E. 
Published: May 2019

AbstractThe central Vanuatu forearc is characterized by a reduced convergence rate at the trench, significant uplift of the overriding plate, and the presence of large forearc islands. Volcanic activity and intermediate‐depth seismicity behind the forearc are among the highest on Earth. These features are presumed to be associated with the subduction of a large seamount chain and an immersed ridge. We used a catalog of P and S arrivals from a local seismological network to construct the first 3‐D velocity model of the region and to relocate earthquakes beneath the forearc. The 3‐D model reveals a highly heterogeneous velocity distribution in the first 40 km beneath the surface. Trench‐parallel low P and S velocity zones in the upper tens of kilometers beneath the western edges of the two largest forearc islands correlate to the major features entering into subduction and suggest highly fractured and probably water‐infiltrated features. Trench‐parallel high‐velocity zones at 5–15‐km depth, further to the east, may be part of a continuous consolidated rock structure that acts as a backstop. Thick overriding plate crust (29 ± 3 km) in the forearc is consistent with the presence of continental remnants. The earthquake distribution is generally heterogeneous, suggesting a complex fault structure and variable stress. Earthquakes are, however, well aligned at the plate interface in between the subducting features, where they constrain the angle of subduction to be 15° on average, down to 10–15‐km depth.
Fluid Injection Experiments in Shale at Elevated Confining Pressures: Determination of Flaw Sizes From Mechanical Experiments
Authors: Chandler Michael R. , Mecklenburgh Julian , Rutter Ernest , Lee Peter 
Published: May 2019

AbstractTriaxial experiments and direct fluid injection experiments have been conducted at confining pressures up to 100 MPa on Mancos shale, Whitby mudstone, Penrhyn slate, and Pennant sandstone. Experiments were conducted with sample axes lying both parallel and perpendicular to layering in the materials. During triaxial failure Penrhyn slate was stronger for samples with cleavage parallel to maximum principal stress, but the two orientations in the shales displayed similar failure stresses. Initial flaw sizes of around 40 μm were calculated from the triaxial data using the wing crack model, with the shales having shorter initial flaws than the nonshales. During direct fluid injection, breakdown was rapid, with no discernible gap between fracture initiation and breakdown. Breakdown pressure increased linearly with confining pressure but was less sensitive to confining pressure than expected from existing models. A fracture mechanics‐based model is proposed to determine the initial flaw size responsible for breakdown in injection experiments. Flaw sizes determined in this way agree reasonably with those determined from the triaxial data in the nonshales at low confining pressures. As confining pressure rises, a threshold is reached, above which the fluid injection experiments suggest a lower initial flaw length of around 10 μm. This threshold is interpreted as being due to the partial closure of flaws. In the shales an initial flaw length of around 10 μm was determined at all confining pressures, agreeing reasonably with those determined through the triaxial experiments.
Structure and Variability of the Antilles Current at 26.5°N
Authors: Meinen Christopher S. , Johns William E. , Moat Ben I. , Smith Ryan H. , Johns Elizabeth M. , Rayner Darren , Frajka‐Williams Eleanor , Garcia Rigoberto F. , Garzoli Silvia L. 
Published: May 2019

AbstractObservations from five different systems provide a robust picture of the structure and variability of the Antilles Current, an important contributor to the oceanic flux budget, at 26.5°N during 2005–2015. The analysis includes three direct measurement technologies (current meters, shipboard acoustic Doppler current profilers, and lowered acoustic Doppler current profilers) and two geostrophy‐based measurement technologies (conductivity‐temperature‐depth profilers and pressure‐equipped inverted echo sounders). The direct systems are shown to produce weaker, and less variable, Antilles Current transport estimates than the geostrophy‐based systems. The record‐length‐mean geostrophic estimate for the Antilles Current is 4.7 Sverdrups (Sv; 1 Sv = 106 m3/s), and the daily temporal standard deviation is 7.5 Sv. The variations of the Antilles Current transport exceed those of the entire basin‐wide meridional overturning circulation, illustrating the impact of this unusual current. Seasonal variability shows a maximum northward transport in August–September; however, the seasonal component of the variability is weak, and aliasing of higher frequencies is still a problem even with 10.5 years of data. The dominant time scales of variability in the spectra are at 70 and 180 days, and there is indication of westward propagation of Rossby Wave‐like features into the region at a speed of 9 cm/s. There is no significant correlation between the Antilles Current transport variations and those of the Florida Current at 27°N, in phase or at lags/leads of up to 5 years, likely reflecting the varying coastal wave/wall jet time scales for information to pass from the basin interior through the Bahamas Islands.
Prediction of 24-hour sodium excretion from spot urine samples in South African adults: a comparison of four equations
Authors: Charlton Karen , Ware Lisa J. , Chidumwa Glory , Cockeran Marike , Schutte Aletta E. , Naidoo Nirmala , Kowal Paul 
Published: May 2019

Abstract
Repeated 24-hour urine collection is considered to be the gold standard for assessing salt intake. This is often impractical in large-population studies, especially in low–middle-income countries. Equations to estimate 24-hour urinary salt excretion from a spot urine sample have been developed, but have not been widely validated in African populations. This study aimed to systematically assess the validity of four existing equations to predict 24-hour urinary sodium excretion (24UNa) from spot urine samples in a nationally representative sample of South Africans. Spot and 24-hour urine samples were collected in a subsample (n = 438) of participants from the World Health Organisation Study on global AGEing and adult health (SAGE) Wave 2 in South Africa in 2015. Measured 24UNa values were compared with predicted 24UNa values from the Kawasaki, Tanaka, INTERSALT and Mage equations using Bland–Altman plots. In this subsample (mean age 52.8 ± 16.4 years; body mass index 30.2 ± 8.2 kg/m2; 76% female; 73% black African; 42% hypertensive), all four equations produced a significantly different population estimate compared with the measured median value of 6.7 g salt/day (IQR 4.4–10.5). Although INTERSALT underestimated salt intake (−3.77 g/d; −1.64 to −7.09), the other equations overestimated by 1.28 g/d (−3.52; 1.97), 6.24 g/d (2.22; 9.45), and 17.18 g/d (8.42; 31.96) for Tanaka, Kawasaki, and Mage, respectively. Bland–Altman curves indicated unacceptably wide levels of agreement. Use of these equations to estimate population level salt intake from spot urine samples in South Africans is not recommended.
A high-fat diet promotes depression-like behavior in mice by suppressing hypothalamic PKA signaling
Authors: Vagena Eirini , Ryu Jae Kyu , Baeza-Raja Bernat , Walsh Nicola M. , Syme Catriona , Day Jonathan P. , Houslay Miles D. , Baillie George S. 
Published: May 2019

AbstractObesity is associated with an increased risk of depression. The aim of the present study was to investigate whether obesity is a causative factor for the development of depression and what is the molecular pathway(s) that link these two disorders. Using lipidomic and transcriptomic methods, we identified a mechanism that links exposure to a high-fat diet (HFD) in mice with alterations in hypothalamic function that lead to depression. Consumption of an HFD selectively induced accumulation of palmitic acid in the hypothalamus, suppressed the 3′, 5′-cyclic AMP (cAMP)/protein kinase A (PKA) signaling pathway, and increased the concentration of free fatty acid receptor 1 (FFAR1). Deficiency of phosphodiesterase 4A (PDE4A), an enzyme that degrades cAMP and modulates stimulatory regulative G protein (Gs)-coupled G protein-coupled receptor signaling, protected animals either from genetic- or dietary-induced depression phenotype. These findings suggest that dietary intake of saturated fats disrupts hypothalamic functions by suppressing cAMP/PKA signaling through activation of PDE4A. FFAR1 inhibition and/or an increase of cAMP signaling in the hypothalamus could offer potential therapeutic targets to counteract the effects of dietary or genetically induced obesity on depression.
Complement C3 activation regulates the production of tRNA-derived fragments Gly-tRFs and promotes alcohol-induced liver injury and steatosis
Authors: Zhong Fudi , Hu Zhigao , Jiang Keqing , Lei Biao , Wu Zhan , Yuan Guandou , Luo Hongliang , Dong Chunqiang , Tang Bo , Zheng Chaowen , Yang Shuai , Zeng Yonglian , Guo Zhenya , Yu Shuiping , Su Huizhao , Zhang Guo , Qiu Xiaoqiang , Tomlinson Stephen , He Songqing 
Published: May 2019

AbstractComplement is known to play a role in alcoholic fatty liver disease (AFLD), but the underlying mechanisms are poorly understood, thereby constraining the development of a rational approach for therapeutic intervention in the complement system. C3 deficiency has been shown to impart protective effects against ethanol-induced hepatic steatosis and inflammation. Here we demonstrate a protection effect in wild-type mice by treatment with CR2-Crry, a specific inhibitor of C3 activation. The expression of glycine transfer (t) RNA-derived fragments (Gly-tRFs) is upregulated in ethanol-fed mice and inhibition of Gly-tRFs in vivo decreases chronic ethanol feeding-induced hepatosteatosis without affecting inflammation. The expression of Gly-tRF was downregulated in C3-deficient or CR2-Crry-treated mice, but not in C5-deficient mice; Gly-tRF expression was restored by the C3 activation products C3a or Asp (C3a-des-Arg) via the regulation of CYP2E1. Transcriptome profiling of hepatic tissues showed that Gly-tRF inhibitors upregulate the expression of sirtuin1 (Sirt1) and subsequently affect downstream lipogenesis and β-oxidation pathways. Mechanistically, Gly-tRF interacts with AGO3 to downregulate Sirt1 expression via sequence complementarity in the 3′ UTR. Notably, the expression levels of C3d, CYP2E1 and Gly-tRF are upregulated, whereas Sirt1 is decreased in AFLD patients compared to healthy controls. Collectively, our findings suggest that C3 activation products contribute to hepatosteatosis by regulating the expression of Gly-tRF. Complement inhibition at the C3 activation step and treatment with Gly-tRF inhibitors may be potential and precise therapeutic approaches for AFLD.
BioWordVec, improving biomedical word embeddings with subword information and MeSH
Authors: Zhang Yijia , Chen Qingyu , Yang Zhihao , Lin Hongfei , Lu Zhiyong 
Published: May 2019

AbstractDistributed word representations have become an essential foundation for biomedical natural language processing (BioNLP), text mining and information retrieval. Word embeddings are traditionally computed at the word level from a large corpus of unlabeled text, ignoring the information present in the internal structure of words or any information available in domain specific structured resources such as ontologies. However, such information holds potentials for greatly improving the quality of the word representation, as suggested in some recent studies in the general domain. Here we present BioWordVec: an open set of biomedical word vectors/embeddings that combines subword information from unlabeled biomedical text with a widely-used biomedical controlled vocabulary called Medical Subject Headings (MeSH). We assess both the validity and utility of our generated word embeddings over multiple NLP tasks in the biomedical domain. Our benchmarking results demonstrate that our word embeddings can result in significantly improved performance over the previous state of the art in those challenging tasks.
Polymorphic transition and nucleation pathway of barium dititanate (BaTi2O5) during crystallization from undercooled liquid
Authors: Ge Xuan , Hu Qiaodan , Lu Wenquan , Cao Sheng , Yang Liang , Xu Mingqin , Xia Mingxu , Li Jianguo 
Published: May 2019

AbstractThe nucleation pathway plays an important role in vitrification, preparation of glass-ceramic composites and synthesis of metastable materials. In this paper, we studied the nucleation pathway of a novel ferroelectric BaTi2O5 (BT2) during crystallization from undercooled liquid by aerodynamic levitation (ADL) containerless processing and structural analysis. An interesting polymorphic transition of BT2 regulated by the undercooling was observed during the crystallization process: the ferroelectric monoclinic phase (γ-BT2) was fabricated at low undercoolings and the paraelectric orthorhombic metastable phase (β-BT2) was obtained from hypercooled liquid. This polymorphic transition phenomenon corresponds to a non-classical nucleation pathway: metastable β-BT2 preferentially nucleates from undercooled melt and γ-BT2 is generated from β phase by solid-state phase transition. The two-step nucleation pathway stems from the structural heredity between the undercooled liquid and crystals. A stronger structural homology exists between the undercooled melt and β-BT2 than γ-BT2 based on diffraction data and atomic configurations analysis. This structural homology coupled with nucleation barrier calculation was used to elucidate the non-classical nucleation pathway of BT2 crystallization: the similarity of the structural unit (Ti-O polyhedra) between the undercooled liquid and the metastable β-BT2 reduces the nucleation barrier and contributes to the preferential precipitation of β-like clusters. This work reveals the formation route of BT2 from cooling melt, which not only benefits the synthesis and application of this novel functional material but also provides a guideline of the crystallization process of titanates from melt at atomic level.
Kinetic Investigation and Dissolution Behavior of Cyanide Alternative Gold Leaching Reagents
Authors: Birich Alexander , Stopic Srecko , Friedrich Bernd 
Published: May 2019

AbstractRaising social awareness and environmental specifications on cyanide application force gold industry to search for alternative leaching reagents. Therefore, researchers worldwide investigate cyanide alternatives for gold recovery since several decades. Often the research activities cannot be compared directly, since different input materials and experimental conditions are used. Over the course of this study, different promising cyanide alternative reagents were investigated in terms of their capability of pure gold dissolution at different temperatures. All experiments took place under identical conditions by using uniform samples of 99.99% gold disks, to enable a comparability. Thiosulfate as one of the most promising reagent thiosulfate according to literature revealed an insufficient leaching behavior. The gold dissolution was hindered due to the formation of a sulfide passive layer. Also in the thiourea trials, a surface precipitation took place, though gold dissolution did not stop. The halogens iodine, bromine and the well-known gold solvent aqua regia dissolved gold very fast (up to ~1,000 mg·h−1·cm−2). Methanosulfonic acid (MSA) was not capable to extract any gold. The experiments were compared with cyanide trials at identical conditions. The average dissolution rate of investigated reagents at 25 °C shows following order: aqua regia > iodine > bromine > cyanide > thiourea > thiosulfate > MSA.
Predatory bacteria can protect SKH-1 mice from a lethal plague challenge
Authors: Findlay James S. , Flick-Smith Helen C. , Keyser Emma , Cooper Ian A. , Williamson E. Diane , Oyston Petra C. F. 
Published: May 2019

AbstractWith the rise of antimicrobial resistance, novel ways to treat bacterial infections are required and the use of predatory bacteria may be one such approach. Bdellovibrio species have been shown in vitro to predate on a wide range of other Gram-negative bacteria, including CDC category A/B pathogens such as Yersinia pestis. The data reported here show that treatment of SKH-1 mice with Bdellovibrio bacteriovorus HD100 provided significant protection from a lethal challenge of Yersinia pestis CO92. This is the first report of protection conferred by predation in vivo against a systemic pathogen challenge. However, this protective effect was not observed in a preliminary study with Balb/c mice. Therefore the effects of the predatory bacteria are complex and may be dependent on immune status/genetics of the host. Overall, predatory bacteria may have utility as a therapeutic modality but further work is required to understand the predator-host interaction.