bluuebunny/crossref_metadata_2025_split huggingface dataset:
Penile Reinnervation Surgery
Authors: Shauly Orr , Gould Daniel J. , Patel Ketan M. 
Published: June 2019

BackgroundModern approaches to erectile dysfunction (ED) often entail the use of multimodal medical therapy and surgery; however, with recent advances in microsurgery, new options may exist for patients suffering from ED. This comprehensive review of the literature serves to reevaluate anatomical and physiological principles that mediate erection to improve understanding for reconstructive surgeons hoping to offer new interventions.MethodsA search strategy for this review was agreed upon by all authors. Articles were divided into 2 categories — primary and secondary. Primary articles were defined as those in which the anatomy of the pelvis and/or perineum was the primary focus of the article, whereas secondary did not directly focus on anatomic considerations. Select historical texts and textbook chapters were also included to provide well established and critical anatomical evidence for this review.ResultsSeveral approaches may be used to restore nerve function to treat neurogenic and vasculogenic ED. Somatic sensory loss can be treated by either direct neurorrhaphy or neuroplasty in the location of disruption. Microvascular techniques also exist to improve flow or to repair small vessels injured in the pelvis. Classical approaches to impotence include vein stripping to reduce venous outflow or direct vascularization to improve inflow.ConclusionsPostradical prostatectomy ED has been demonstrated to improve with microsurgical interventions. In the coming years, innovation will continue and collaboration between plastic surgeons and urologists will allow us to tackle this common and difficult problem.
Keratinocyte Cytotoxicity of Peracetic Acid Used as Sterilizing Agent for Implant Scaffolds
Authors: Soto Artur Ferronato , Arthur Rodrigo Alex , Kapczinski Myriam Pereira , Lamers Marcelo Lazzaron , Mengatto Cristiane Machado 
Published: June 2019

Abstract
Peracetic acid (PAA) has been used to sterilize biomaterial scaffolds and allografts before their implantation. Although the antimicrobial effectiveness of PAA is widely known, there are no studies investigating its cytotoxicity on keratinocytes. This study aimed to investigate the cytotoxicity of PAA concentrations on keratinocytes by growing HaCaT cells in culture medium. Different concentrations of PAA (control-untreated, 0.01, 0.1, 1, 10, 100, 200, 400, 800, 1200, 1600, and 2000 ppm) were added to the culture wells and allowed to be in direct contact with cells for up to 24 hours. Cytotoxicity was quantitatively and qualitatively determined by cell viability assay and analysis of morphological changes. Statistical analysis was performed with 1-way analysis of variance and Tukey test at 5% significance. Cells treated with 0.01 and 0.1 ppm followed the same morphological pattern of untreated cells, whereas cells treated with 1.0 ppm presented about 20% of floating cells and dark cytoplasmic granules. More than 50% of the cells treated with 10 and 100 ppm were destroyed, whereas the attached ones showed unclear and interrupted cell membranes. Concentrations of 1 ppm or greater had less than 64.4% of viable cells compared with the control group. This study concluded that exposure of keratinocytes to concentrations of 1 ppm or greater of PAA resulted in strong cytotoxic effects.
New Perspectives in Surgical Marking Since the Advent of Infrared Laser Angiography
Authors: Hammond Jacob B. , Bryant Lyndsey A. , Casey William J. , Rebecca Alanna M. 
Published: June 2019

Introduction
This study investigates the utility of common surgical dyes under direct visualization and infrared laser angiography.

Methods
Pigments affecting light within the visual (λ = 400–700 nm) and infrared (λ = 700–1000 nm) spectra were placed on subjects spanning the Fitzpatrick scale. Photometric properties of these pigments were assessed under direct visualization and infrared laser angiography.

Results
Among patients of various Fitzpatrick classifications, black ink pigment and pigment within the violet spectrum (λ = 380–450 nm) were most distinguishable under direct visualization. Colored inks, gentian violet and methylene blue dyes, were not visualized under infrared laser angiography. Black permanent ink appeared under both direct visualization and infrared laser angiography. Indocyanine green suspended in ethyl alcohol and applied to skin as a marking pen appeared clear under direct visualization and was detectable under infrared laser angiography.

Conclusions
Black permanent marking ink allows visualization of surgical markings under infrared laser angiography, whereas gentian violet and methylene blue did not interfere with infrared visualization. Indocyanine green suspended in ethyl alcohol is a contemporary marking pen that may be used to outline anatomical surface landmarks under infrared laser angiography.
Topical Leptospermum Honey in the Management of Aplasia Cutis Congenita in Neonates
Authors: Boyar Vita 
Published: June 2019

BACKGROUND:
Aplasia cutis congenita (ACC) is an uncommon, heterogeneous group of disorders characterized by focal or widespread absence of skin from certain parts of the body. Complications range from 20% to 50%; they are potentially life-threatening. There is no consensus on best treatment of ACC. We report on successful closure of aplasia cutis lesions using topical active Leptospermum honey (ALH).

CASES:
This article describes a case of a full-term neonate with a large ACC lesion. A conservative approach was taken in the care of this lesion, in accordance with appropriate wound care principles and the care of this medically fragile neonate. This included applying topical ALH twice a day and covering defects with a secure dressing. All lesions progressed to complete closure. Time to closure was either similar or shorter than published data.

CONCLUSIONS:
Our experience with these cases suggests that topical ALH may be an effective natural treatment option for neonates with ACC. This conservative management led to wound closure without topical or systemic antibiotics or prolonged hospital stay.
The impact of worldwide, national and sub-national severity distributions in Burden of Disease studies: a case study of individual cancer types in Scotland
Authors: Wyper Grant MA , Grant Ian , Fletcher Eilidh , McCartney Gerry , Stockton Diane L 
Published: June 2019

AbstractAimThe main aim of this study was to consider the extent to which the use of worldwide severity distributions in Burden of Disease studies are influencing cross-country comparisons, by comparing Global Burden of Disease distributions with nationally derived severity distributions in Scotland for cancer types.MethodsWe obtained individual records from the Scottish Cancer Registry for 21 cancer types and linked these to registered deaths. We estimated prevalent cancer cases for 2016 and assigned each case to sequelae using Global Burden of Disease (GBD) 2016 study definitions. We compared the impact of using severity distributions based on GBD 2016, a Scotland-wide distribution, and a distribution specific to deprivation strata in Scotland, on the weighted-average disability weights for each cancer type in Scotland.ResultsThe relative difference in point estimates of weighted-average disability weights based on GBD 2016 worldwide severity distributions compared with Scottish national severity distributions resulted in overestimates in the majority of cancers (17 out of 21 cancer types). The largest overestimates were for gallbladder and biliary tract cancer (70.8%), oesophageal cancer (31.6%) and pancreatic cancer (31.2%). Furthermore, the use of weighted-average disability weights based on Scottish national severity distributions rather than sub-national Scottish severity distributions stratified by deprivation quintile overestimated weighted-average disability weights in the least deprived areas (16 out of 18 cancer types), and underestimated in the most deprived areas (16 out of 18 cancer types).ConclusionOur findings illustrate a bias in point estimates of weighted-average disability weights created using worldwide severity distributions. This bias would have led to the misrepresentation of non-fatal estimates of the burden of individual cancers, and underestimated the scale of socioeconomic inequality in this non-fatal burden. This highlights the importance of not interpreting non-fatal estimates of burden of disease too precisely, especially for sub-national estimates and those comparing populations when relying on data inputs from other countries. It is essential to ensure that any estimates are based upon the best available country-specific data at the lowest granularity.
A murine aging cell atlas reveals cell identity and tissue-specific trajectories of aging
Authors: Kimmel Jacob C. , Penland Lolita , Rubinstein Nimrod D. , Hendrickson David G. , Kelley David R. , Rosenthal Adam Z. 
Published: June 2019

AbstractBackgroundAging is a pleiotropic process affecting many aspects of organismal and cellular physiology. Mammalian organisms are composed of a constellation of distinct cell type and state identities residing within different tissue environments. Due to technological limitations, the study of aging has traditionally focused on changes within individual cell types, or the aggregate changes across cell types within a tissue. The influence of cell identity and tissue environment on the trajectory of aging therefore remains unclear.ResultsHere, we perform single cell RNA-seq on >50,000 individual cells across three tissues in young and aged mice. These molecular profiles allow for comparison of aging phenotypes across cell types and tissue environments. We find transcriptional features of aging common across many cell types, as well as features of aging unique to each type. Leveraging matrix factorization and optimal transport methods, we compute a trajectory and magnitude of aging for each cell type. We find that cell type exerts a larger influence on these measures than tissue environment.ConclusionIn this study, we use single cell RNA-seq to dissect the influence of cell identity and tissue environment on the aging process. Single cell analysis reveals that cell identities age in unique ways, with some common features of aging shared across identities. We find that both cell identities and tissue environments exert influence on the trajectory and magnitude of aging, with cell identity influence predominating. These results suggest that aging manifests with unique directionality and magnitude across the diverse cell identities in mammals.
All-or-none visual categorization in the human brain
Authors: Retter Talia L. , Jiang Fang , Webster Michael A. , Rossion Bruno 
Published: June 2019

AbstractWhether visual categorization, i.e., specific responses to a certain class of visual events across a wide range of exemplars, is graded or all-or-none in the human brain is largely unknown. We address this issue with an original frequency-sweep paradigm probing the evolution of responses between the minimum and optimal presentation times required to elicit both neural and behavioral face categorization responses. In a first experiment, widely variable natural images of nonface objects are progressively swept from 120 to 3 Hz (8.33 to 333 ms duration) in rapid serial visual presentation sequences; variable face exemplars appear every 1 s, enabling an implicit frequency-tagged face-categorization electroencephalographic (EEG) response at 1 Hz. In a second experiment, faces appear non-periodically throughout such sequences at fixed presentation rates, while participants explicitly categorize faces. Face-categorization activity emerges with stimulus durations as brief as 17 ms for both neural and behavioral measures (17 – 83 ms across individual participants neurally; 33 ms at the group level). The face-categorization response amplitude increases until 83 ms stimulus duration (12 Hz), implying graded categorization responses. However, a strong correlation with behavioral accuracy suggests instead that dilution from missed categorizations, rather than a decreased response to each face stimulus, may be responsible. This is supported in the second experiment by the absence of neural responses to behaviorally uncategorized faces, and equivalent amplitudes of isolated neural responses to only behaviorally categorized faces across presentation rates, consistent with the otherwise stable spatio-temporal signatures of face-categorization responses in both experiments. Overall, these observations provide original evidence that visual categorization of faces, while being widely variable across human observers, occurs in an all-or-none fashion in the human brain.
Lactation curve model with explicit representation of perturbations as a phenotyping tool for dairy livestock precision farming
Authors: Ahmed Ben Abdelkrim , Laurence Puillet , Pierre Gomes , Olivier Martin 
Published: June 2019

AbstractBackgroundUnderstanding the effects of environment on livestock provides valuable information on how farm animals express their production potential, and on their welfare. Ruminants often face perturbations that affect their performance. Evaluating the effect of these perturbations on animal performance could provide metrics to quantify how animals cope with their environment and therefore, better manage them. In dairy systems, milk production records can be used to evaluate perturbations because (1) they are easily accessible, (2) the overall dynamics throughout the lactation process have been widely described, and (3) perturbations often occur and cause milk loss. In this study, a lactation curve model with explicit representation of perturbations was developed.MethodsThe perturbed lactation model is made of two components. The first one describes a theoretical unperturbed lactation curve (unperturbed lactation model), and the second describes deviations from the unperturbed lactation model. The model was fitted on 319 complete lactation data from 181 individual dairy goats allowing for the characterization of individual perturbations in terms of their starting date, intensity, and shape.ResultsThe fitting procedure detected a total of 2,354 perturbations with an average of 7.40 perturbations per lactation. Loss of production due to perturbations varied between 2% and 19%. Results show that the number of perturbations is not the major factor explaining the loss in milk yield over the lactation, suggesting that there are different types of animal response to challenging factors.ConclusionsBy incorporating explicit representation of perturbations, the model allowed the characterization of potential milk production, deviations induced by perturbations (loss of milk), and thereby comparison between animals. These indicators are likely to be useful to move from raw data to decision support tools in dairy production.
Cold storage reveals distinct metabolic perturbations in processing and non-processing cultivars of potato
Authors: Datir Sagar S , Yousf Saleem , Sharma Shilpy , Kochle Mohit , Ravikumar Ameeta , Chugh Jeetender 
Published: June 2019

AbstractCold-induced sweetening (CIS) causes a great loss to the potato (Solanum tuberosumL.) processing industry wherein selection of potato genotypes using biochemical information through marker-trait associations has found to be advantageous. In the present study, we have performed nuclear magnetic resonance (NMR) spectroscopy-based metabolite profiling on tubers from five potato cultivars (Atlantic, Frito Lay-1533, Kufri Jyoti, Kufri Pukhraj, and PU1) differing in their CIS ability and processing characteristics at harvest and after one month of cold storage at 4°C. A total of 39 water-soluble metabolites were detected using1H NMR. Multivariate statistical analysis indicated significant differences in metabolite profiles between processing and non-processing potato cultivars. Further analysis revealed distinct metabolite perturbations as induced by cold storage in both types of cultivars wherein significantly affected metabolites were categorized mainly as sugars, sugar alcohols, amino acids, and organic acids. Significant metabolic perturbations were used to carry out metabolic pathway analysis that in turn tracked 130 genes encoding enzymes (involved directly and/or indirectly) involved in CIS pathway using potato genome sequence survey data. Based on the metabolite perturbations, the possible relevant metabolite biomarkers, significantly affected metabolic pathways, and key candidate genes responsible for the observed metabolite variation were identified. Overall, studies provided new insights in further manipulation of specific metabolites playing a crucial role in determining the cold-induced ability and processing quality of potato cultivars for improved quality traits.HighlightMetabolomic profiling using 1D1H-NMR and bioinformatics analysis of potato cultivars for the identification of metabolites and genes controlling biochemical pathways in cold-stored potato tubers
Integration of vestibular and hindlimb inputs by vestibular nucleus neurons: Multisensory influences on postural control
Authors: Miller Derek M. , Balaban Carey D. , McCall Andrew A. 
Published: June 2019

1.AbstractWe recently demonstrated in both decerebrate and conscious cat preparations that hindlimb somatosensory inputs converge with vestibular afferent input onto neurons in multiple CNS locations that participate in balance control. While it is known that head position and limb state modulate postural reflexes, presumably through both vestibulospinal and reticulospinal pathways, the combined influence of the two inputs on the activity of neurons in these brainstem regions is unknown. In the present study, we evaluated the responses of vestibular nucleus (VN) neurons to vestibular and hindlimb stimuli delivered separately and together in conscious cats. We hypothesized that VN neuronal firing during activation of vestibular and limb proprioceptive inputs would be well-fit by an additive model. Extracellular single-unit recordings were obtained from neurons in the caudal aspects of the VN. Sinusoidal whole-body rotation in the roll plane was used as the search stimulus. Units responding to the search stimulus were tested for their responses to 10° ramp-and-hold roll body rotation, 10° extension hindlimb movement, and both movements delivered simultaneously. Composite response histograms were fit by a model of low and high pass filtered limb and body position signals using least squares nonlinear regression. We found that VN neuronal activity during combined vestibular and hindlimb proprioceptive stimulation in the conscious cat is well-fit by a simple additive model for signals with similar temporal dynamics. The mean R2 value for goodness of fit across all units was 0.74 ± 0.17. It is likely that VN neurons that exhibit these integrative properties participate in adjusting vestibulospinal outflow in response to limb state.New and NoteworthyVestibular nucleus neurons receive convergent information from hindlimb somatosensory inputs and vestibular inputs. In this study, extracellular single unit recordings of vestibular nucleus neurons during conditions of passively applied limb movement, passive whole-body rotations, and combined stimulation, were well fit by an additive model. The integration of hindlimb somatosensory inputs with vestibular inputs at the first stage of vestibular processing suggests vestibular nucleus neurons account for limb position in determining vestibulospinal responses to postural perturbations.
Linear modeling reveals a predominance ofcis- overtrans- regulatory effects in wild and domesticated barley
Authors: Haas Matthew , Himmelbach Axel , Mascher Martin 
Published: June 2019

AbstractBarley, like other crops, has experienced a series of genetic changes that have impacted its architecture and growth habit to suit the needs of humans, termed the domestication syndrome. Domestication also resulted in a concomitant bottleneck that reduced sequence diversity in genes and regulatory regions. Little is known about regulatory changes resulting from domestication in barley. We used RNA-seq to examine allele-specific expression (ASE) in hybrids between wild and domesticated barley. Our results show that most genes have conserved regulation. In contrast to studies of allele specific expression in interspecific hybrids, we find almost a complete absence oftranseffects. We also find thatcisregulation is largely stable in response to short-term cold stress. Our study has practical implications for crop improvement using wild relatives. Genes regulated incisare more likely to be expressed in a new genetic background at the same level as in their native background.
Individual-subject functional localization increases univariate activation but not multivariate pattern discriminability in the ‘multiple-demand’ frontoparietal network
Authors: Shashidhara Sneha , Spronkers Floortje S. , Erez Yaara 
Published: June 2019

AbstractThe frontoparietal ‘multiple-demand’ (MD) control network plays a key role in goal-directed behavior. Recent developments of multivoxel pattern analysis (MVPA) for fMRI data allow for more fine-grained investigations into the functionality and properties of brain systems. In particular, MVPA in the MD network was used to gain better understanding of control processes such as attentional effects, adaptive coding, and representation of multiple task-relevant features, but overall low decoding levels have limited its use for this network. A common practice of applying MVPA is by investigating pattern discriminability within a region-of-interest (ROI) using a template mask, thus ensuring that the same brain areas are studied in all participants. This approach offers high sensitivity, but does not take into account differences between individuals in the spatial organization of brain regions. An alternative approach uses independent localizer data for each subject to select the most responsive voxels and define individual ROIs within the boundaries of a group template. Such an approach allows for a refined and targeted localization based on the unique pattern of activity of individual subjects while ensuring that functionally similar brain regions are studied for all subjects. In the current study we tested whether using individual ROIs leads to changes in decodability of task-related neural representations as well as univariate activity across the MD network compared to when using a group template. We used three localizer tasks to separately define subject-specific ROIs: spatial working memory, verbal working memory, and a Stroop task. We then systematically assessed univariate and multivariate results in a separate rule-based criterion task. All the localizer tasks robustly recruited the MD network and evoked highly reliable activity patterns in individual subjects. Consistent with previous studies, we found a clear benefit of the subject-specific ROIs for univariate results from the criterion task, with increased activity in the individual ROIs based on the localizers’ data, compared to the activity observed when using the group template. In contrast, there was no benefit of the subject-specific ROIs for the multivariate results in the form of increased discriminability, as well as no cost of reduced discriminability. Both univariate and multivariate results were similar in the subject-specific ROIs defined by each of the three localizers. Our results provide important empirical evidence for researchers in the field of cognitive control for the use of individual ROIs in the frontoparietal network for both univariate and multivariate analysis of fMRI data, and serve as another step towards standardization and increased comparability across studies.