bluuebunny/crossref_metadata_2025_split huggingface dataset:
Evidence of causal effect of major depression on alcohol dependence: findings from the psychiatric genomics consortium
Authors: Polimanti Renato , Peterson Roseann E. , Ong Jue-Sheng , MacGregor Stuart , Edwards Alexis C. , Clarke Toni-Kim , Frank Josef , Gerring Zachary , Gillespie Nathan A. , Lind Penelope A. , Maes Hermine H. , Martin Nicholas G. , Mbarek Hamdi , Medland Sarah E. , Streit Fabian ,   Major Depressive Disorder Working Group of the Psychiatric Genomics Consortium, Agrawal Arpana , Edenberg Howard J. , Kendler Kenneth S. , Lewis Cathryn M. , Sullivan Patrick F. , Wray Naomi R. , Gelernter Joel , Derks Eske M. 
Published: April 2019

AbstractBackgroundDespite established clinical associations among major depression (MD), alcohol dependence (AD), and alcohol consumption (AC), the nature of the causal relationship between them is not completely understood. We leveraged genome-wide data from the Psychiatric Genomics Consortium (PGC) and UK Biobank to test for the presence of shared genetic mechanisms and causal relationships among MD, AD, and AC.MethodsLinkage disequilibrium score regression and Mendelian randomization (MR) were performed using genome-wide data from the PGC (MD: 135 458 cases and 344 901 controls; AD: 10 206 cases and 28 480 controls) and UK Biobank (AC-frequency: 438 308 individuals; AC-quantity: 307 098 individuals).ResultsPositive genetic correlation was observed between MD and AD (rgMD−AD = + 0.47, P = 6.6 × 10−10). AC-quantity showed positive genetic correlation with both AD (rgAD−AC quantity = + 0.75, P = 1.8 × 10−14) and MD (rgMD−AC quantity = + 0.14, P = 2.9 × 10−7), while there was negative correlation of AC-frequency with MD (rgMD−AC frequency = −0.17, P = 1.5 × 10−10) and a non-significant result with AD. MR analyses confirmed the presence of pleiotropy among these four traits. However, the MD-AD results reflect a mediated-pleiotropy mechanism (i.e. causal relationship) with an effect of MD on AD (beta = 0.28, P = 1.29 × 10−6). There was no evidence for reverse causation.ConclusionThis study supports a causal role for genetic liability of MD on AD based on genetic datasets including thousands of individuals. Understanding mechanisms underlying MD-AD comorbidity addresses important public health concerns and has the potential to facilitate prevention and intervention efforts.
Anaphylactic reaction to anakinra in a child with steroid-dependent idiopathic recurrent pericarditis and successful management with canakinumab
Authors: Epçaçan Serdar , Sahin Sezgin , Kasapcopur Ozgur 
Published: April 2019

AbstractConventional algorithm for treatment of pericarditis and prevention of recurrences consists of non-steroid anti-inflammatory drugs and/or colchicine, followed by corticosteroids in resistant patients. Anakinra has emerged as a promising and safe treatment modality for steroid-dependent idiopathic recurrent pericarditis. However, the efficacy and safety of canakinumab, another anti-interleukin-1 agent, has not been assessed up to date. Herein, we present development of an anaphylactic reaction due to anakinra and a successful subsequent treatment with canakinumab for the first time in the literature.
The true costs of US agricultural dumping
Authors: Murphy Sophia , Hansen-Kuhn Karen 
Published: April 2019

AbstractAgricultural commodity ‘dumping’ is the practice of exporting commodities at prices below the cost of production. Dumping cheats farmers of a fair return for their work. It cheats both the farmers in the USA who are paid below cost, and the farmers abroad whose crops compete with US exports in markets distorted by dumping. And dumping shortchanges the ecosystems upon which humanity depends for its survival. Neo-classical economics holds that when prices are low, suppliers will produce less. The persistence of dumping in the US agricultural commodity sector defies that assumption. In trade circles, where the problem is acknowledged to an extent, dumping is explained as a result of government subsidies. The authors argue that the dumping numbers provided by the Institute for Agriculture and Trade Policy suggest this explanation is at best partial. They look at definitions of dumping, and explanations for how it arises and why it persists, in defiance of expectations that markets are self-correcting.
The 2005–2016 Trends of Formaldehyde Columns Over China Observed by Satellites: Increasing Anthropogenic Emissions of Volatile Organic Compounds and Decreasing Agricultural Fire Emissions
Authors: Shen Lu , Jacob Daniel J. , Zhu Lei , Zhang Qiang , Zheng Bo , Sulprizio Melissa P. , Li Ke , De Smedt Isabelle , González Abad Gonzalo , Cao Hansen , Fu Tzung‐May , Liao Hong 
Published: April 2019

AbstractWe use 2005–2016 observations of formaldehyde (HCHO) columns over China from the OMI, GOME‐2, and SCIAMACHY satellite instruments to evaluate long‐term trends in emission inventories of volatile organic compounds (VOCs) that affect air quality. The observations show large increases over 2005–2016 in the North China Plain (+1.1 ± 0.5% a−1 relative to 2005) and the Yangtze River Delta region (+1.5 ± 0.4% a−1 relative to 2005), consistent with the trend of anthropogenic VOC emissions in the Multi‐resolution Emission Inventory for China (MEIC). Unlike other pollutants, VOC emissions have not been decreasing in recent years. An exception is the Huai River Basin in rural eastern China where the satellite data show rapidly decreasing VOC emissions since the early 2010s that appear to reflect bans on agricultural fires.
Natural killer cells limit the clearance of senescent lung adenocarcinoma cells
Authors: Stokes Kate L. , Cortez-Retamozo Virna , Acosta Jonuelle , Lauderback Brian , Robles-Oteiza Camila , Cicchini Michelle , Pittet Mikael J. , Feldser David M. 
Published: April 2019

AbstractSenescence is an important p53-controlled tumor suppressor program that not only opposes the proliferation of cancer cells but also promotes their immune-mediated clearance in certain contexts. In hepatocellular cancer, p53 induction promotes an innate immune cell-mediated clearance of senescent cells wherein natural killer (NK) cells seem to play the primary sentinel role. Whether NK cells also surveil cancer cells in other tumor types when p53 is activated to promote a senescence response is unknown. To identify the role that NK and other innate immune cell types have on the surveillance and destruction of lung adenocarcinoma cells, we developed an orthotopic transplantation model where p53 gene function could be restored to induce senescence after successful engraftment of tumor cells in the mouse lung. Contrary to precedent, we found that NK cells actually limited the efficient clearance of tumor cells from the mouse lung after p53 restoration. Instead, activation of p53 induced the infiltration of monocytes, neutrophils, and interstitial macrophages. Loss of NK cells further promoted expansion of these inflammatory cell types and tumor clearance after p53 restoration. These observations suggest that NK cell responses to p53 activation in lung adenocarcinoma is distinct from those found in other tumor types and that diverse innate immune cell populations may play context-dependent roles during tumor immune surveillance. Further, our data provide an impetus to understand the broader mechanisms that regulate cancer cell destruction by multiple cell types of the innate immune system and distinct cancer contexts.
Strong modification of the transport level alignment in organic materials after optical excitation
Authors: Stadtmüller Benjamin , Emmerich Sebastian , Jungkenn Dominik , Haag Norman , Rollinger Markus , Eich Steffen , Maniraj Mahalingam , Aeschlimann Martin , Cinchetti Mirko , Mathias Stefan 
Published: April 2019

AbstractOrganic photovoltaic devices operate by absorbing light and generating current. These two processes are governed by the optical and transport properties of the organic semiconductor. Despite their common microscopic origin—the electronic structure—disclosing their dynamical interplay is far from trivial. Here we address this issue by time-resolved photoemission to directly investigate the correlation between the optical and transport response in organic materials. We reveal that optical generation of non-interacting excitons in a fullerene film results in a substantial redistribution of all transport levels (within 0.4 eV) of the non-excited molecules. As all observed dynamics evolve on identical timescales, we conclude that optical and transport properties are completely interlinked. This finding paves the way for developing novel concepts for transport level engineering on ultrafast time scales that could lead to novel functional optoelectronic devices.
A study of the extraordinarily strong and tough silk produced by bagworms
Authors: Yoshioka Taiyo , Tsubota Takuya , Tashiro Kohji , Jouraku Akiya , Kameda Tsunenori 
Published: April 2019

AbstractGlobal ecological damage has heightened the demand for silk as ‘a structural material made from sustainable resources’. Scientists have earnestly searched for stronger and tougher silks. Bagworm silk might be a promising candidate considering its superior capacity to dangle a heavy weight, summed up by the weights of the larva and its house. However, detailed mechanical and structural studies on bagworm silks have been lacking. Herein, we show the superior potential of the silk produced by Japan’s largest bagworm, Eumeta variegata. This bagworm silk is extraordinarily strong and tough, and its tensile deformation behaviour is quite elastic. The outstanding mechanical property is the result of a highly ordered hierarchical structure, which remains unchanged until fracture. Our findings demonstrate how the hierarchical structure of silk proteins plays an important role in the mechanical property of silk fibres.
Deviation from the matching law reflects an optimal strategy involving learning over multiple timescales
Authors: Iigaya Kiyohito , Ahmadian Yashar , Sugrue Leo P. , Corrado Greg S. , Loewenstein Yonatan , Newsome William T. , Fusi Stefano 
Published: April 2019

AbstractBehavior deviating from our normative expectations often appears irrational. For example, even though behavior following the so-called matching law can maximize reward in a stationary foraging task, actual behavior commonly deviates from matching. Such behavioral deviations are interpreted as a failure of the subject; however, here we instead suggest that they reflect an adaptive strategy, suitable for uncertain, non-stationary environments. To prove it, we analyzed the behavior of primates that perform a dynamic foraging task. In such nonstationary environment, learning on both fast and slow timescales is beneficial: fast learning allows the animal to react to sudden changes, at the price of large fluctuations (variance) in the estimates of task relevant variables. Slow learning reduces the fluctuations but costs a bias that causes systematic behavioral deviations. Our behavioral analysis shows that the animals solved this bias-variance tradeoff by combining learning on both fast and slow timescales, suggesting that learning on multiple timescales can be a biologically plausible mechanism for optimizing decisions under uncertainty.
YAP inhibition enhances the differentiation of functional stem cell-derived insulin-producing β cells
Authors: Rosado-Olivieri Edwin A. , Anderson Kendall , Kenty Jennifer H. , Melton Douglas A. 
Published: April 2019

AbstractStem cell-derived insulin-producing beta cells (SC-β) offer an inexhaustible supply of functional β cells for cell replacement therapies and disease modeling for diabetes. While successful directed differentiation protocols for this cell type have been described, the mechanisms controlling its differentiation and function are not fully understood. Here we report that the Hippo pathway controls the proliferation and specification of pancreatic progenitors into the endocrine lineage. Downregulation of YAP, an effector of the pathway, enhances endocrine progenitor differentiation and the generation of SC-β cells with improved insulin secretion. A chemical inhibitor of YAP acts as an inducer of endocrine differentiation and reduces the presence of proliferative progenitor cells. Conversely, sustained activation of YAP results in impaired differentiation, blunted glucose-stimulated insulin secretion, and increased proliferation of SC-β cells. Together these results support a role for YAP in controlling the self-renewal and differentiation balance of pancreatic progenitors and limiting endocrine differentiation in vitro.
Integrin activation by the lipid molecule 25-hydroxycholesterol induces a proinflammatory response
Authors: Pokharel Swechha M. , Shil Niraj K. , GC Jeevan B. , Colburn Zachary T. , Tsai Su-Yu , Segovia Jesus A. , Chang Te-Hung , Bandyopadhyay Smarajit , Natesan Senthil , Jones Jonathan C. R. , Bose Santanu 
Published: April 2019

AbstractIntegrins are components of cell-matrix adhesions, and function as scaffolds for various signal transduction pathways. So far no lipid ligand for integrin has been reported. Here we show that a lipid, oxysterol 25-hydroxycholesterol (25HC), directly binds to α5β1 and αvβ3 integrins to activate integrin-focal adhesion kinase (FAK) signaling. Treatment of macrophages and epithelial cells with 25HC results in an increase in activated αvβ3 integrin in podosome and focal adhesion matrix adhesion sites. Moreover, activation of pattern recognition receptor on macrophages induces secretion of 25HC, triggering integrin signaling and the production of proinflammatory cytokines such as TNF and IL-6. Thus, the lipid molecule 25HC is a physiologically relevant activator of integrins and is involved in positively regulating proinflammatory responses. Our data suggest that extracellular 25HC links innate immune inflammatory response with integrin signaling.
Prevention of mitochondrial genomic instability in yeast by the mitochondrial recombinase Mhr1
Authors: Ling Feng , Bradshaw Elliot , Yoshida Minoru 
Published: April 2019

AbstractMitochondrial (mt) DNA encodes factors essential for cellular respiration, therefore its level and integrity are crucial. ABF2 encodes a mitochondrial DNA-binding protein and its null mutation (Δabf2) induces mtDNA instability in Saccharomyces cerevisiae. Mhr1 is a mitochondrial recombinase that mediates the predominant form of mtDNA replication and acts in mtDNA segregation and the repair of mtDNA double-stranded breaks (DSBs). However, the involvement of Mhr1 in prevention of mtDNA deletion mutagenesis is unknown. In this study we used Δabf2 mhr1-1 double-mutant cells, which lose mitochondrial function in media containing fermentable carbon sources, to investigate whether Mhr1 is a suppressor of mtDNA deletion mutagenesis. We used a suppresivity assay and Southern blot analysis to reveal that the Δabf2 mutation causes mtDNA deletions rather than an mtDNA-lacking (ρ0) phenotype, and observed that mtDNA deletions are exacerbated by an additional mhr1-1 mutation. Loss of respiratory function due to mtDNA fragmentation occurred in ∆mhr1 and ∆abf2 mhr1-1 cells. However, exogenous introduction of Mhr1 into Δabf2 mhr1-1 cells significantly rescued respiratory growth, suggesting that Mhr1-driven homologous mtDNA recombination prevents mtDNA instability.
EpiRank: Modeling Bidirectional Disease Spread in Asymmetric Commuting Networks
Authors: Huang Chung-Yuan , Chin Wei-Chien-Benny , Wen Tzai-Hung , Fu Yu-Hsiang , Tsai Yu-Shiuan 
Published: April 2019

AbstractCommuting network flows are generally asymmetrical, with commuting behaviors bi-directionally balanced between home and work locations, and with weekday commutes providing many opportunities for the spread of infectious diseases via direct and indirect physical contact. The authors use a Markov chain model and PageRank-like algorithm to construct a novel algorithm called EpiRank to measure infection risk in a spatially confined commuting network on Taiwan island. Data from the country’s 2000 census were used to map epidemic risk distribution as a commuting network function. A daytime parameter was used to integrate forward and backward movement in order to analyze daily commuting patterns. EpiRank algorithm results were tested by comparing calculations with actual disease distributions for the 2009 H1N1 influenza outbreak and enterovirus cases between 2000 and 2008. Results suggest that the bidirectional movement model outperformed models that considered forward or backward direction only in terms of capturing spatial epidemic risk distribution. EpiRank also outperformed models based on network indexes such as PageRank and HITS. According to a sensitivity analysis of the daytime parameter, the backward movement effect is more important than the forward movement effect for understanding a commuting network’s disease diffusion structure. Our evidence supports the use of EpiRank as an alternative network measure for analyzing disease diffusion in a commuting network.
Scale invariance of BMP signaling gradients in zebrafish
Authors: Huang Yan , Umulis David M 
Published: April 2019

AbstractIn both vertebrates and invertebrates, spatial patterning along the Dorsal-ventral (DV) embryonic axis depends on a morphogen gradient of Bone Morphogenetic Protein signaling. Scale invariance of DV patterning by BMPs has been found in both vertebrates and invertebrates, however the mechanisms that regulate gradient scaling remain controversial. To obtain quantitative data that can be used to address core questions of scaling, we introduce a method to tune the size of zebrafish embryos by reducing varying amounts of vegetal yolk. We quantified the BMP signaling gradient in wild-type and perturbed embryos and found that the system scales for reductions in cross-sectional perimeter of up to 30%. Furthermore, we found that the degree of scaling for intraspecies scaling within zebrafish is greater than that between Danioninae species.
Corrective saccades influence velocity judgments and interception
Authors: Goettker Alexander , Brenner Eli , Gegenfurtner Karl R. , de la Malla Cristina 
Published: April 2019

AbstractIn daily life we often interact with moving objects in tasks that involve analyzing visual motion, like catching a ball. To do so successfully we track objects with our gaze, using a combination of smooth pursuit and saccades. Previous work has shown that the occurrence and direction of corrective saccades leads to changes in the perceived velocity of moving objects. Here we investigate whether such changes lead to equivalent biases in interception. Participants had to track moving targets with their gaze, and in separate sessions either judge the targets’ velocities or intercept them by tapping on them. We separated trials in which target movements were tracked with pure pursuit from trials in which identical target movements were tracked with a combination of pursuit and corrective saccades. Our results show that interception errors are shifted in accordance with the observed influence of corrective saccades on velocity judgments. Furthermore, while the time at which corrective saccades occurred did not affect velocity judgments, it did influence their effect in the interception task. Corrective saccades around 100 ms before the tap had a stronger effect on the endpoint error than earlier saccades. This might explain why participants made earlier corrective saccades in the interception task.
CO2 flux emissions from the Earth’s most actively degassing volcanoes, 2005–2015
Authors: Aiuppa Alessandro , Fischer Tobias P. , Plank Terry , Bani Philipson 
Published: April 2019

AbstractThe global carbon dioxide (CO2) flux from subaerial volcanoes remains poorly quantified, limiting our understanding of the deep carbon cycle during geologic time and in modern Earth. Past attempts to extrapolate the global volcanic CO2 flux have been biased by observations being available for a relatively small number of accessible volcanoes. Here, we propose that the strong, but yet unmeasured, CO2 emissions from several remote degassing volcanoes worldwide can be predicted using regional/global relationships between the CO2/ST ratio of volcanic gases and whole-rock trace element compositions (e.g., Ba/La). From these globally linked gas/rock compositions, we predict the CO2/ST gas ratio of 34 top-degassing remote volcanoes with no available gas measurements. By scaling to volcanic SO2 fluxes from a global catalogue, we estimate a cumulative “unmeasured” CO2 output of 11.4 ± 1.1 Mt/yr (or 0.26 ± 0.02·1012 mol/yr). In combination with the measured CO2 output of 27.4 ± 3.6 Mt/yr (or 0.62 ± 0.08·1012 mol/yr), our results constrain the time-averaged (2005–2015) cumulative CO2 flux from the Earth’s 91 most actively degassing subaerial volcanoes at 38.7 ± 2.9 Mt/yr (or 0.88 ± 0.06·1012 mol/yr).
Evolutionary expression differences of creatine synthesis-related genes: Implications for skeletal muscle metabolism in fish
Authors: Borchel Andreas , Verleih Marieke , Kühn Carsten , Rebl Alexander , Goldammer Tom 
Published: April 2019

AbstractThe creatine/phosphocreatine system is the principal energy buffer in mammals, but is scarcely documented in fish. We measured the gene expression of major enzymes of this system, glycine amidinotransferase (GATM), guanidinoacetate N-methyltransferase (GAMT) and muscle-type creatine kinase (CKM) in kidney, liver, and muscle tissues of fish and mammals. CKM was expressed strongly in the muscles of all examined species. In contrast, GATM and GAMT were strongly expressed in the muscle tissue of fish, but not of mammals. This indicates that creatine synthesis and usage are spatially separated in mammals, but not in fish, which is supported by RNA-Seq data of 25 species. Differences in amino acid metabolism along with methionine adenosyltransferase gene expression in muscle from fishes but not mammals further support a central metabolic role of muscle in fish, and hence different organization of the creatine/phosphocreatine biosynthesis system in higher and lower vertebrates.
Associations of physical activity and sedentary time with body composition in Brazilian young adults
Authors: Silva Bruna Gonçalves C. da , Silva Inácio Crochemore M. da , Ekelund Ulf , Brage Soren , Ong Ken K. , De Lucia Rolfe Emanuella , Lima Natália Peixoto , Silva Shana Ginar da , França Giovanny V. Araújo de , Horta Bernardo Lessa 
Published: April 2019

AbstractThe findings of studies on the association between physical activity and adiposity are not consistent, and most are cross-sectional and used only self-reported measures. The aims of this study were to evaluate: 1) independent and combined cross-sectional associations of objectively-measured physical activity and sedentary time with body composition outcomes at 30 years, and 2) prospective associations of changes in self-reported physical activity from 23 to 30 years with the same outcomes in participants from the 1982 Pelotas (Brazil) Birth Cohort. Body mass index, waist circumference, visceral abdominal fat, fat mass index, and android/gynoid fat ratio were the outcomes. 3,206 participants were analysed. In cross-sectional analyses, higher objectively-measured moderate-to-vigorous physical activity was associated with lower body mass index (β = 0.017, 95%CI: −0.026; −0.009), waist circumference (β = −0.043, 95%CI: −0.061; −0.025), visceral abdominal fat (β = −0.006, 95%CI: −0.009; −0.003), and fat mass index (β = −0.015, 95%CI: −0.021; −0.009), independent of sedentary time. Sedentary time was independently associated only with higher fat mass index (β = 0.003, 95%CI: 0.001; 0.005). In longitudinal analyses, using self-reported measure, adiposity was lower among those who were consistently active or who became active. Adiposity was similar among the “became inactive” and “consistently inactive” subjects. Our findings suggest metabolic benefits from engagement in physical activity throughout young adulthood, with stronger associations on concurrent levels.