bluuebunny/crossref_metadata_2025_split huggingface dataset:
Abstract 1368: Simultaneous cell-free RNA PD-L1 expression and MSI from the same single-tube of blood in solid tumors
Authors: Weiss Glen J. , Walker Paul , Aktas Dilek , Ford Andrew , Brown Charmaine , Yeh Chen-Hsiung , Javadi Nader 
Published: August 2019

Abstract
Background: Liquid biopsy is a minimally invasive technique available in the clinic using next-generation sequencing (NGS) of plasma circulating cell-free DNA (cfDNA) and cfRNA. Here we report liquid biopsy results from solid tumors using the Circulogene Theranostics Personalized Gene Profile (CGP, 50-gene panel), as well as, microsatellite instability (MSI) testing. CGP uses proprietary in situ enrichment requiring minimal input volume of 20 uL plasma (cfDNA), 400 uL (cfRNA), and 100 uL buffy coat per case from the same single-tube of blood.
Methods: cfRNA PD-L1 expression, MSI, and co-occurring cfDNA mutations were retrospectively compiled from CGP ordered at multiple centers. Ct value cutoff for 1 copy PD-L1 (positive) was 42. MSI was performed using paired buffy coat gDNA (normal) and plasma cfDNA (tumor) on 5 microsatellite mononucleotide markers, BAT-25, BAT-26, NR-21, NR-24 and MONO-27 (Promega; current an industry standard that has been used in KEYNOTE pembrolizumab trials) and analyzed by capillary electrophoresis genetic analyzer. Based on batched processing, Circulogene’s turnaround time (TAT) is 5 business days on average. Data was summarized and the correlation between PD-L1 and MSI was measured.
Results: 397 patients (median age 67 years, range 27-96; 210 men: 187 women) underwent CGP testing for both PD-L1 and MSI (11/2017-10/2018). The majority of cancer types were lung (n=187), colorectal (n=43), breast (n=40), pancreatic (n=32), and prostate (n=30). 59/397 (14.9%) were PD-L1 positive, in the range of expected PD-L1 positivity across solid tumors. 110/397 (27.7%) were MSI-High (MSI-H). There was no correlation between PD-L1 and MSI results (r^2 &lt;0.01). There was a median of 3 mutations/patient (range 0-19), with a 0% sample failure rate. Overall, 23 cases had no detectable mutations (5.8%), but 11 of these 23 (47.8%) had either PD-L1 positivity or MSI-H.
Conclusions: Simultaneous cfRNA PD-L1 and MSI testing from the same single-tube blood is feasible in a liquid biopsy and their positivity has frequency in the expected range for solid tumors (Xang et al. Onco Targets Ther 2016, Zhang et al. AMP Conference 2018, Abstract ST009). Despite the low plasma sample input, there were no sample failures, suggesting CGP in situ enrichment is robust and has a rapid TAT. Assay results with linkage to clinical outcomes is warranted.
Citation Format: Glen J. Weiss, Paul Walker, Dilek Aktas, Andrew Ford, Charmaine Brown, Chen-Hsiung Yeh, Nader Javadi. Simultaneous cell-free RNA PD-L1 expression and MSI from the same single-tube of blood in solid tumors [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1368.
Abstract 1377: Improved ctDNA detection in early stage non-small-cell lung cancer
Authors: Heider Katrin , Wan Jonathan C. , Gale Davina , Mouliere Florent C. , Qian Wendi , Kateb Angels , Doughton Gail , Ramenatte Nicola , Tysoe Ruth , Smith Christopher G. , Rassl Doris M. , Harden Susan , Rintoul Robert C. , Massie Charles , Rosenfeld Nitzan 
Published: August 2019

Abstract
Overall survival of non-small-cell lung cancer (NSCLC) patients remains poor as patients are frequently diagnosed at a late stage. The evaluation of circulating tumour DNA (ctDNA) has been shown to offer a non-invasive method for detection of cancer. However, detection rates of ctDNA in patients with early stage cancers, including NSCLC, have been limited due to sampling and sensitivity issues. We developed a novel algorithm for INtegration of VAriant Reads (INVAR), which uses sequencing data across hundreds to thousands of tumour-mutated loci to detect ctDNA in plasma samples at high sensitivity. We applied this to a cohort of stage I-III NSCLC patients recruited in the LUCID study. LUCID is a prospective and observational study of 100 stage I-IIIB NSCLC who are planning to undergo radical treatment (surgery or radiotherapy +/- chemotherapy) with curative intent. Plasma samples were collected before and after treatment with curative intent. We analysed a total of 50 patients using patient specific-sequencing panels and detected ctDNA in 78% of cases before treatment, at ctDNA fractions as low as 1.7x10-5. For 17 of those patients staging information was available. Here, we detected ctDNA in 50% of stage I patients (split evenly between stages IA and B) and 100% of stage II and III patients. We also applied INVAR to whole exome and shallow whole genome sequencing data from plasma samples, and showed that this algorithm can be used to detect low ctDNA fractions in such data. Our findings highlight an opportunity to improve ctDNA detection in early stage NSCLC by using patient specific sequencing information. Additionally, our algorithm has the potential to aid in longitudinal cancer monitoring and is applicable to a variety of sequencing data types. We aim to apply this approach to serial samples obtained through the LUCID study to investigate its application in the treatment management.
Citation Format: Katrin Heider, Jonathan C. Wan, Davina Gale, Florent C. Mouliere, Wendi Qian, Angels Kateb, Gail Doughton, Nicola Ramenatte, Ruth Tysoe, Christopher G. Smith, Doris M. Rassl, Susan Harden, Robert C. Rintoul, Charles Massie, Nitzan Rosenfeld. Improved ctDNA detection in early stage non-small-cell lung cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1377.
Abstract 138: TNBC induces immune suppressive tumor microenvironments through microRNAs
Authors: Guo Beichu , Kantono Melvin , Sun Wei 
Published: August 2019

Abstract
Metastatic breast cancer is the second leading cause of cancer-related deaths for US women. The triple negative breast cancer subtype (TNBC) is one of the major contributors to breast cancer mortality, among all types of breast cancer. There are no effective treatments available for metastatic tumors. Therefore, identifying and targeting novel tumorigenesis pathways will facilitate developing effective therapeutic approaches that could ultimately lead to effective treatment for breast cancer, particularly metastatic cancer and TNBC. Our results demonstrate that miR-146a promotes tumorigenesis and metastasis of breast cancer. We found that miR-146a was markedly overexpressed in TNBC cell lines. Notably, miR-146a deficiency in a spontaneous mammary tumor model leads to reduced tumor growth and metastasis. Notably, miR-146a shifts the polarization of macrophages into immunosuppressive phenotypes. Our studies suggest that miR-146a may contribute to tumor development through modulation of tumor microenvironments.
Note: This abstract was not presented at the meeting.
Citation Format: Beichu Guo, Melvin Kantono, Wei Sun. TNBC induces immune suppressive tumor microenvironments through microRNAs [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 138.
Abstract 1418: Brother of regulator of imprinted sites (BORIS) inhibits cisplatin induced DNA damage in non-small-cell lung cancer
Authors: Song Yongfei , Li Chao , Fang Mengdie , Ren Juan , Fang Jianfei , Wang Xiaoju , Zhang Yanmei 
Published: August 2019

Abstract
Cisplatin (DDP) treatment is primary modality for non-small-cell lung cancer (NSCLC) chemotherapy. However, patients benefited from DDP treatment limitedly due to the DDP resistance. Brother of Regulator of Imprinted Sites (BORIS, CTCFL) is the paralogue of CCCTC-binding factor (CTCF) and expressed abnormally in most type of cancers and is potential tumor target for breast, cervical carcinoma and lung cancer. However, the funciton of BORIS on carcinoma is unrevealed. In our previous study, we found that BORIS suppressed apoptosis and resisted 5-FU (Fluorouracil) treatment in colorectal cancer. As either 5-FU or DDP induces DNA damage and apoptosis of carcinoma cells, BORIS perhaps resists DDP treatment too. Based on the prevalent expression of BORIS and the high incidence of DDP resistance in NSCLC, we proposed that BORIS contributed to DDP resistance by suppressing DNA damage in NSCLC. We collected RNA sequencing data of 156 NSCLC patients who received DDP chemotherapy from The Cancer Genome Atlas and analyzed the expressions of BORIS. We found high BORIS expression correlated with short survival in NSCLC patients who received DDP chemotherapy. BORIS expression declined from prospective to retrospective collected tissue which responded to DDP chemotherapy. It suggested the probability function of BORIS on DNA damage repair. In cell cultured lung cancer cell lines, BORIS was silenced or over-expressed including DDP resistant cell line. It indicated that A549/DDP (DDP resistant A549 cell line) expressed relative higher BORIS than A549 parental cells and BORISexpression levels correlated with cell viability. H1299 and A549/DDP expressed comparative BORIS and growed comparativly. H460 and A549 expressed relative lower BORIS levels and grew slower than H1299 and A549/DDP. BORIS knockdown inhibited the proliferation of NSCLC cells, enhanced the sensitivity of A549/DDP and H1299 to DDP treatment and induced DNA damage. Reversely DDP induced DNA damage was suppressed by BORIS over-expression. The excision repairing gene ERCC1, which is regulated by BORIS, might be the assistant for DDP resistance. Either high expression of BORIS or ERCC1 indicated short survival rates of NSCLC patients. Our data suggested that BORIS suppressed DNA damage and promoted the progression of NSCLC and DDP resistance, which indicated its potential in NSCLC prognosis and therapy.
Citation Format: Yongfei Song, Chao Li, Mengdie Fang, Juan Ren, Jianfei Fang, Xiaoju Wang, Yanmei Zhang. Brother of regulator of imprinted sites (BORIS) inhibits cisplatin induced DNA damage in non-small-cell lung cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1418.
Abstract 1435: An ultra-sensitive and high-throughput technology (imPACT) for the identification and isolation of intrinsic and emergent neoepitope-specific T cells from the peripheral blood and TILs of cancer patients
Authors: Peng Songming , Quach Boi , An Duo , Sandoval Salemiz , Bao Robert , Pan Zheng , Bethune Michael , Dalmas Olivier , Yi Michael , Meadows Corey , Heeringa Katherine , Guo Linlin , yuen Benjamin , Sorfleet John , Jacoby Kyle , Moot Robert , Lu William , Nguyen Diana , Sennino Barbara , Conroy Andrew , Purandare Bhamini , Litterman Adam , Mandl Stefanie , Franzusoff Alex 
Published: August 2019

Abstract
T cells capable of targeting neoepitopes (neoE) from tumor-specific mutations hold the potential to uniquely recognize and kill tumor cells. However, most cancer patients fail to mount a sufficient intrinsic T cell immune response to translate into clinical benefit. PACT Pharma has developed an ultra-sensitive and high-throughput technology (imPACT) for identifying and isolating neoE-specific T cells from peripheral blood. Whole exome sequencing of tumors and computational prediction identify patient-specific neoepitopes resulting from tumor-specific mutations. We then interrogate patient blood for neoE-specific T cells using human leukocyte antigen (HLA) protein-based reagents comprising a spectrum of human HLAs, thus enabling the evaluation of &gt;99% of all individuals with cancer. We have identified and isolated neoE-specific T cells from the peripheral blood of &gt;80% treatment-naive patients with bladder and colorectal cancers, melanoma and other solid tumors. Primary human T cells engineered with T cell receptor sequences (TCRs) cloned from the imPACT-isolated T cells gain the ability to kill cognate neoE-presenting tumor cells, thereby also confirming the specificity of the isolated TCR sequences to bind to the neoE target. This approach is also amenable to the longitudinal analysis of patients undergoing treatment for their cancers, to characterize the neoE-specific T cell populations likely to confer clinical benefit. In summary, the imPACT technology efficiently discovers potentially meaningful intrinsic neoE-specific TCRs from patients, enabling the development of personalized neoTCR-T cell therapies for the eradication of solid tumors.
Citation Format: Songming Peng, Boi Quach, Duo An, Salemiz Sandoval, Robert Bao, Zheng Pan, Michael Bethune, Olivier Dalmas, Michael Yi, Corey Meadows, Katherine Heeringa, Linlin Guo, Benjamin yuen, John Sorfleet, Kyle Jacoby, Robert Moot, William Lu, Diana Nguyen, Barbara Sennino, Andrew Conroy, Bhamini Purandare, Adam Litterman, Stefanie Mandl, Alex Franzusoff. An ultra-sensitive and high-throughput technology (imPACT) for the identification and isolation of intrinsic and emergent neoepitope-specific T cells from the peripheral blood and TILs of cancer patients [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1435.
Abstract 1448: Lymphangiogenesis-inducing whole-cell vaccine against melanoma promotes broad tumor-specific T cell immunity and effective tumor control
Authors: Sasso Maria Stella , Hauert Sylvie , Briquez Priscilla S. , Wang Yue , Ishihara Jun , Hubbell Jeffrey A. , Swartz Melody A. 
Published: August 2019

Abstract
We recently reported that the growth of lymphatic vessels (lymphangiogenesis) in mouse melanomas dramatically enhances the efficacy of immunotherapy by promoting immune cell infiltration and broadening the anti-tumor T cell repertoire (Fankhauser et al, Sci. Trans. Med. 2017). Correlative evidence supporting such ‘lymphangiogenic potentiation’ was also seen in human melanoma patients, suggesting a possible immunotherapeutic use of the pro-lymphangiogenic growth factor VEGFC. On the other hand, tumor lymphangiogenesis is known to promote cancer cell dissemination and metastasis, raising concerns about the possibility of manipulating lymphatic vessels directly within the tumor site as a treatment strategy for cancer immunotherapy. Here, we sought to manipulate and exploit the immune-promoting functions of lymphatics remotely from the tumor by developing a lymphangiogenesis-inducing cancer vaccine that mimics the microenvironment of a lymphangiogenic tumor. Whole-cell vaccines were formulated using lethally irradiated B16F10 or B16F10-OVA mouse melanoma cells, either mock-transduced or genetically modified to overexpress VEGFC, and combined with topically retained immune adjuvants (ctrl-vax and VEGFC-vax, respectively). Upon intradermal injection, VEGFC-vax induced extensive local lymphatic growth and stimulated increased lymphatic transport from the vaccine site to the draining lymph nodes. Consistently with our previous study, VEGFC induced CCL21 upregulation and local recruitment of CCR7+ naïve T cells, which could undergo in situ priming in the vaccine site. Compared to ctrl-vax, VEGFC-vax elicited a robust T cell response directed against multiple mouse melanoma antigens, as assessed by ex vivo antigen stimulation and IFNγ ELISPOT. In a prophylactic vaccine setting, VEGFC-vax induced stronger tumor-specific T cell immunity and greater protection from tumor challenge compared to both ctrl-vax as well as a GM-CSF-secreting whole-cell vaccine. Overall this study provides a proof of concept for the use of VEGFC in cancer vaccines and characterizes a whole-cell lymphangiogenesis-inducing vaccine formulation with potential for clinical translation.
Citation Format: Maria Stella Sasso, Sylvie Hauert, Priscilla S. Briquez, Yue Wang, Jun Ishihara, Jeffrey A. Hubbell, Melody A. Swartz. Lymphangiogenesis-inducing whole-cell vaccine against melanoma promotes broad tumor-specific T cell immunity and effective tumor control [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1448.
Abstract 1453: Development of a novel PD-1 vaccine and in combination with two Chimeric HER-2 peptide vaccine provides synergistic inhibition of tumor growth in a syngeneic Balb/c model challenged with CT26/HER-2 carcinoma cell line
Authors: Bekaii-Saab Tanios , Overholser Jay , Yang Yuhong , Penichet Manuel , Kaumaya Pravin 
Published: August 2019

Abstract
Background: Therapeutic blockade of the signaling axis between PD-1 and its ligand programmed cell death ligand-1 (PD-L1) with monoclonal antibodies has shown remarkable clinical success in the treatment of cancer and demonstrated impressive activity across a broad set of cancer subtypes, even at advanced and metastatic stages of disease. Contrary to treatment with monoclonal antibodies, chimeric B-cell cancer vaccines have the advantage of producing a specific immune response that can potentially induce memory B & T cell responses, while reducing immune evasion and suppression.
Methods: We have translated two HER-2 combination peptide vaccines (B-Vaxx) to the clinic in a Phase 1/2b trial to safely deliver curative and transformative cancer immunotherapies to advanced cancer patients. We have created and established the development of a novel B-cell peptide vaccine (Key-Vaxx) with high immunogenicity that binds to human PD-1 and produces tumor inhibition in vivo in an animal model of colon cancer. Here, we describe the transferable CT-26-HER2 neu tumor model in Balb/c was used to test for synergistic effects of anti-PD1 immunization therapy in combination with anti-HER2 immunization therapy to determine whether this combination could increase immunogenicity, enhance anti-tumor responses and provide synergistic benefit in inhibiting tumor growth.
Results: We show robust HER-2 and PD-1 antibody responses in all vaccinated mice indicating that the combined vaccination is effective in reducing tumor growth in a Balb/c syngeneic model of colon carcinoma versus either the PD-1 vaccine or more importantly the positive control gold standard that is anti-mouse PD-1 monoclonal antibody. The vaccine combination was found to be safe and did not appear to exhibit toxicity or autoimmunity.
Conclusion: Development of a novel PD-1 vaccine in combination with two Chimeric HER-2 peptide vaccine provides synergistic inhibition of tumor growth with no evidence of toxicity or autoimmunity. A clinical trial with the combination is under planning.
Citation Format: Tanios Bekaii-Saab, Jay Overholser, Yuhong Yang, Manuel Penichet, Pravin Kaumaya. Development of a novel PD-1 vaccine and in combination with two Chimeric HER-2 peptide vaccine provides synergistic inhibition of tumor growth in a syngeneic Balb/c model challenged with CT26/HER-2 carcinoma cell line [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1453.
Abstract 1456: MEDI5395: A recombinant oncolytic virus with oncolytic and immune modulatory properties
Authors: Harper James A. , Burke Shannon , Leinster Andrew , Rath Nicola , Cheng Xing , Jin Hong , Wilkinson Robert W. , Carroll Danielle 
Published: August 2019

Abstract
MEDI5395 is a genetically modified attenuated Newcastle disease virus (NDV). A reverse genetic system has overcome environmental and regulatory concerns by uncoupling oncolytic potency from avian pathogenicity. MEDI5395 has the intrinsic ability to infect and kill tumor cells and has been inserted with a GM-CSF transgene to potentiate a stronger adaptive immune response. Described here is an extensive in vitro and in vivo pharmacology package that reveals the broad oncolytic activity and immune-modulatory properties of MEDI5395 in a variety of pre-clinical models.
In vitro, MEDI5395 lytic activity in human tumor cells is associated with elevated levels of tumor selective viral replication and expression of the GM-CSF transgene. MEDI5395 infection of immune cells indicated preferential uptake of virus and subsequent self-limiting replication in myeloid cells. Infected myeloid cells expressed cell surface activation markers (e.g. PD-L1) after 24 hours and were effective carriers of virus and mediated the transfer of infectious NDV particles to tumor cells resulting in death through oncolysis. Further mechanistic studies, indicated NDV-killed tumor cells released antigens that were capable of cross-presentation by dendritic cells driving activation of tumor antigen-specific autologous T cells.
In murine models, IV delivery of NDV leads to long lasting tumor selective replication and transgene expression. MEDI5395 administration results in significant anti-tumor activity, observed in patient-derived xenograft models, and in murine syngeneic cancer models. Together, the results suggest that MEDI5395 may act to positively transform the tumor microenvironment. This, coupled to its tumor-selective oncolytic capacity, further underscore NDV as a promising multimodal cancer therapeutic platform and why FTIH studies are planned to start in 2019.
Citation Format: James A. Harper, Shannon Burke, Andrew Leinster, Nicola Rath, Xing Cheng, Hong Jin, Robert W. Wilkinson, Danielle Carroll. MEDI5395: A recombinant oncolytic virus with oncolytic and immune modulatory properties [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1456.
Abstract 1457: Sustained persistence of IL-2 signaling enhances the antitumor effect of peptide vaccines
Authors: Kumai Takumi , Sultan Hussein , Harabuchi Yasuaki , Celis Esteban 
Published: August 2019

Abstract
Peptide vaccines can be a successful and cost-effective way of generating T-cell responses against defined tumor antigens, especially when combined with immune adjuvants such as poly-IC. However, strong immune adjuvants can induce a collateral increase in numbers of irrelevant, nonspecific T cells, which limits the effectiveness of the peptide vaccines. Here, we report that providing prolonged IL2 signaling in the form of either IL2/ anti-IL2 complexes or pegylated IL2 overcomes the competitive suppressive effect of irrelevant T cells, allowing the preferential expansion of antigen-specific T cells, and increasing the therapeutic effectiveness of the vaccines against established tumors. This vaccination strategy using peptides and sustained IL2 could be taken into the clinic for the treatment of cancer.
Citation Format: Takumi Kumai, Hussein Sultan, Yasuaki Harabuchi, Esteban Celis. Sustained persistence of IL-2 signaling enhances the antitumor effect of peptide vaccines [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 1457.