bluuebunny/crossref_metadata_2025_split huggingface dataset:
Concurrence of form and function in developing networks and its role in synaptic pruning
Authors: Millán Ana P. , Torres J. J. , Johnson S. , Marro J 
Published: June 2018

AbstractA fundamental question in neuroscience is how structure and function of neural systems are related. We study this interplay by combining a familiar auto-associative neural network with an evolving mechanism for the birth and death of synapses. A feedback loop then arises leading to two qualitatively different types of behaviour. In one, the network structure becomes heterogeneous and dissasortative, and the system displays good memory performance; furthermore, the structure is optimised for the particular memory patterns stored during the process. In the other, the structure remains homogeneous and incapable of pattern retrieval. These findings provide an inspiring picture of brain structure and dynamics that is compatible with experimental results on early brain development, and may help to explain synaptic pruning. Other evolving networks—such as those of protein interactions—might share the basic ingredients for this feedback loop and other questions, and indeed many of their structural features are as predicted by our model.
Corticosteroid suppression of antiviral immunity increases bacterial loads and mucus production in COPD exacerbations
Authors: Singanayagam Aran , Glanville Nicholas , Girkin Jason L. , Ching Yee Man , Marcellini Andrea , Porter James D. , Toussaint Marie , Walton Ross P. , Finney Lydia J. , Aniscenko Julia , Zhu Jie , Trujillo-Torralbo Maria-Belen , Calderazzo Maria Adelaide , Grainge Chris , Loo Su-Ling , Veerati Punnam Chander , Pathinayake Prabuddha S. , Nichol Kristy S. , Reid Andrew T. , James Phillip L. , Solari Roberto , Wark Peter A. B. , Knight Darryl A. , Moffatt Miriam F. , Cookson William O. , Edwards Michael R. , Mallia Patrick , Bartlett Nathan W. , Johnston Sebastian L. 
Published: June 2018

AbstractInhaled corticosteroids (ICS) have limited efficacy in reducing chronic obstructive pulmonary disease (COPD) exacerbations and increase pneumonia risk, through unknown mechanisms. Rhinoviruses precipitate most exacerbations and increase susceptibility to secondary bacterial infections. Here, we show that the ICS fluticasone propionate (FP) impairs innate and acquired antiviral immune responses leading to delayed virus clearance and previously unrecognised adverse effects of enhanced mucus, impaired antimicrobial peptide secretion and increased pulmonary bacterial load during virus-induced exacerbations. Exogenous interferon-β reverses these effects. FP suppression of interferon may occur through inhibition of TLR3- and RIG-I virus-sensing pathways. Mice deficient in the type I interferon-α/β receptor (IFNAR1−/−) have suppressed antimicrobial peptide and enhanced mucin responses to rhinovirus infection. This study identifies type I interferon as a central regulator of antibacterial immunity and mucus production. Suppression of interferon by ICS during virus-induced COPD exacerbations likely mediates pneumonia risk and raises suggestion that inhaled interferon-β therapy may protect.
Synergistic and low adverse effect cancer immunotherapy by immunogenic chemotherapy and locally expressed PD-L1 trap
Authors: Song Wantong , Shen Limei , Wang Ying , Liu Qi , Goodwin Tyler J. , Li Jingjing , Dorosheva Olekasandra , Liu Tianzhou , Liu Rihe , Huang Leaf 
Published: June 2018

AbstractAlthough great success has been obtained in the clinic, the current immune checkpoint inhibitors still face two challenging problems: low response rate and immune-related adverse effects (irAEs). Here we report the combination of immunogenic chemotherapy and locally expressed PD-L1 trap fusion protein for efficacious and safe cancer immunotherapy. We demonstrate that oxaliplatin (OxP) boosts anti-PD-L1 mAb therapy against murine colorectal cancer. By design of a PD-L1 trap and loading its coding plasmid DNA into a lipid-protamine-DNA nanoparticle, PD-L1 trap is produced transiently and locally in the tumor microenvironment, and synergizes with OxP for tumor inhibition. Significantly, unlike the combination of OxP and anti-PD-L1 mAb, the combination of OxP and PD-L1 trap does not induce obvious Th17 cells accumulation in the spleen, indicating better tolerance and lower tendency to irAEs. The reports here may highlight the potential of applying PD-L1 inhibitor, especially locally expressed PD-L1 trap, in cancer therapy following OxP-based chemotherapy.
Globally asynchronous sulphur isotope signals require re-definition of the Great Oxidation Event
Authors: Philippot Pascal , Ávila Janaína N. , Killingsworth Bryan A. , Tessalina Svetlana , Baton Franck , Caquineau Tom , Muller Elodie , Pecoits Ernesto , Cartigny Pierre , Lalonde Stefan V. , Ireland Trevor R. , Thomazo Christophe , van Kranendonk Martin J. , Busigny Vincent 
Published: June 2018

AbstractThe Great Oxidation Event (GOE) has been defined as the time interval when sufficient atmospheric oxygen accumulated to prevent the generation and preservation of mass-independent fractionation of sulphur isotopes (MIF-S) in sedimentary rocks. Existing correlations suggest that the GOE was rapid and globally synchronous. Here we apply sulphur isotope analysis of diagenetic sulphides combined with U-Pb and Re-Os geochronology to document the sulphur cycle evolution in Western Australia spanning the GOE. Our data indicate that, from ~2.45 Gyr to beyond 2.31 Gyr, MIF-S was preserved in sulphides punctuated by several episodes of MIF-S disappearance. These results establish the MIF-S record as asynchronous between South Africa, North America and Australia, argue for regional-scale modulation of MIF-S memory effects due to oxidative weathering after the onset of the GOE, and suggest that the current paradigm of placing the GOE at 2.33–2.32 Ga based on the last occurrence of MIF-S in South Africa should be re-evaluated.
Engineering triangular carbon quantum dots with unprecedented narrow bandwidth emission for multicolored LEDs
Authors: Yuan Fanglong , Yuan Ting , Sui Laizhi , Wang Zhibin , Xi Zifan , Li Yunchao , Li Xiaohong , Fan Louzhen , Tan Zhan’ao , Chen Anmin , Jin Mingxing , Yang Shihe 
Published: June 2018

AbstractCarbon quantum dots (CQDs) have emerged as promising materials for optoelectronic applications on account of carbon’s intrinsic merits of high stability, low cost, and environment-friendliness. However, the CQDs usually give broad emission with full width at half maximum exceeding 80 nm, which fundamentally limit their display applications. Here we demonstrate multicolored narrow bandwidth emission (full width at half maximum of 30 nm) from triangular CQDs with a quantum yield up to 54–72%. Detailed structural and optical characterizations together with theoretical calculations reveal that the molecular purity and crystalline perfection of the triangular CQDs are key to the high color-purity. Moreover, multicolored light-emitting diodes based on these CQDs display good stability, high color-purity, and high-performance with maximum luminance of 1882–4762 cd m−2 and current efficiency of 1.22–5.11 cd A−1. This work will set the stage for developing next-generation high-performance CQDs-based light-emitting diodes.
Ni(II)-catalyzed asymmetric alkenylations of ketimines
Authors: Quan Mao , Wang Xiaoxiao , Wu Liang , Gridnev Ilya D. , Yang Guoqiang , Zhang Wanbin 
Published: June 2018

AbstractChiral allylic amines are not only present in many bioactive compounds, but can also be readily transformed to other chiral amines. Therefore, the asymmetric synthesis of chiral allylic amines is highly desired. Herein, we report two types of Ni(II)-catalyzed asymmetric alkenylation of cyclic ketimines for the preparation of chiral allylic amines. When ketimines bear alkyl or alkoxycarbonyl groups, the alkenylation gives five- and six-membered cyclic α-tertiary allylic amine products with excellent yields and enantioselectivities under mild reaction conditions. A variety of ketimines can be used and the method tolerates some variation in alkenylboronic acid scope. Furthermore, with alkenyl five-membered ketimine substrates, an alkenylation/rearrangement reaction occurs, providing seven-membered chiral sulfamide products bearing a conjugated diene skeleton with excellent yields and enantioselectivities. Mechanistic studies reveal that the ring expansion step is a stereospecific site-selective process, which can be catalyzed by acid (Lewis acid or Brønsted acid).
A transient self-assembling self-replicator
Authors: Colomer Ignacio , Morrow Sarah M. , Fletcher Stephen P. 
Published: June 2018

AbstractDeveloping physical models of complex dynamic systems showing emergent behaviour is key to informing on persistence and replication in biology, how living matter emerges from chemistry, and how to design systems with new properties. Herein we report a fully synthetic small molecule system in which a surfactant replicator is formed from two phase-separated reactants using an alkene metathesis catalyst. The replicator self-assembles into aggregates, which catalyse their own formation, and is thermodynamically unstable. Rather than replicating until the reactants are fully consumed, the metastable replicator is depleted in a second metathesis reaction, and closed system equilibrium is eventually reached. Mechanistic experiments suggest phase separation is responsible for both replicator formation and destruction.
360° omnidirectional, printable and transparent photodetectors for flexible optoelectronics
Authors: Lien Der-Hsien , Wang Hsin-Ping , Chen Shih-Bin , Chi Yu-Chieh , Wu Chung-Lun , Lin Gong-Ru , Liao Ying-Chih , He Jr-Hau 
Published: June 2018

AbstractFlexible optoelectronics that can be bent, wrapped, and stretched have attracted interest for wearable and mobile applications. In this work, we demonstrate a transparent 360° omnidirectional photodetector (PD) that can be stretched and wrapped around flexible or curved substrates. By embedding interlaced ZnO and Ag nanowires (NWs) in thermoplastic polyurethane via inkjet printing, the device featured > 75% transmittance in the visible region, showing high photoresponsivity and response time (10–30 A/W and 0.8 s, respectively). Moreover, the flexible PD performs well under deformation (only 9% decay in the photocurrent under 60% strain and 8% loss when the device is bent at a radius of 5 mm), which allows it to be readily applied on curved surfaces, such as skin or optical fibers. This study opens the door for the development of flexible optoelectronics that could be implemented in fiber optics, wearable electronics, self-powered systems, bio-signal monitors, and epidermal electronics.
Whole Exome Sequencing of Patients from Multicase Families with Systemic Lupus Erythematosus Identifies Multiple Rare Variants
Authors: Delgado-Vega Angélica M. , Martínez-Bueno Manuel , Oparina Nina Y. , López Herráez David , Kristjansdottir Helga , Steinsson Kristján , Kozyrev Sergey V. , Alarcón-Riquelme Marta E. 
Published: June 2018

AbstractIn an effort to identify rare alleles associated with SLE, we have performed whole exome sequencing of the most distantly related affected individuals from two large Icelandic multicase SLE families followed by Ta targeted genotyping of additional relatives. We identified multiple rare likely pathogenic variants in nineteen genes co-segregating with the disease through multiple generations. Gene co-expression and protein-protein interaction analysis identified a network of highly connected genes comprising several loci previously implicated in autoimmune diseases. These genes were significantly enriched for immune system development, lymphocyte activation, DNA repair, and V(D)J gene recombination GO-categories. Furthermore, we found evidence of aggregate association and enrichment of rare variants at the FAM71E1/EMC10 locus in an independent set of 4,254 European SLE-cases and 4,349 controls. Our study presents evidence supporting that multiple rare likely pathogenic variants, in newly identified genes involved in known disease pathogenic pathways, segregate with SLE at the familial and population level.
The earliest direct evidence of frogs in wet tropical forests from Cretaceous Burmese amber
Authors: Xing Lida , Stanley Edward L. , Bai Ming , Blackburn David C. 
Published: June 2018

AbstractFrogs are a familiar and diverse component of tropical forests around the world. Yet there is little direct evidence from the fossil record for the antiquity of this association. We describe four fossil frog specimens from mid-Cretaceous (~99 mya) amber deposits from Kachin State, Myanmar for which the associated fauna provides rich paleoenvironmental context. Microcomputed tomographic analysis provides detailed three-dimensional anatomy for these small frogs, which is generally unavailable for articulated anurans in the Mesozoic. These crown-group anuran specimens provide the earliest direct evidence for anurans in a wet tropical forest. Based on a distinct combination of skeletal characters, at least one specimen has clear similarities to living alytoid frogs as well as several Mesozoic taxa known from the Jehol Biota in China. Whereas many Mesozoic frogs are from seasonal and mesic paleoenvironments, these fossils provide the earliest direct evidence of anurans in wet tropical forests.
Far rapid synthesis of giant DNA in the Bacillus subtilis genome by a conjugation transfer system
Authors: Itaya Mitsuhiro , Sato Mitsuru , Hasegawa Miki , Kono Nobuaki , Tomita Masaru , Kaneko Shinya 
Published: June 2018

AbstractBacillus subtilis offers a platform for giant DNA synthesis, which is mediated by the connection of overlapping DNA segments called domino DNA, in the cloning locus of the host. The domino method was successfully used to produce DNA fragments as large as 3500 kbp. However, domino DNA is limited to <100 kbp because of size restrictions regarding the transformation (TF) of B. subtilis competent cells. A novel conjugal transfer (CT) method was designed to eliminate the TF size limit. The CT method enables rapid and efficient domino reactions in addition to the transfer of giant DNA molecules of up to 875 kbp to another B. subtilis genome within 4 hours. The combined use of the TF and CT should enable significantly rapid giant DNA production.
The analysis of latent fingermarks on polymer banknotes using MALDI-MS
Authors: Scotcher K. , Bradshaw R. 
Published: June 2018

AbstractIn September 2016, the UK adopted a new Bank of England (BoE) £5 polymer banknote, followed by the £10 polymer banknote in September 2017. They are designed to be cleaner, stronger and have increased counterfeit resilience; however, fingermark development can be problematic from the polymer material as various security features and coloured/textured areas have been found to alter the effectiveness of conventional fingermark enhancement techniques (FETs). As fingermarks are one of the most widely used forms of identification in forensic cases, it is important that maximum ridge detail be obtained in order to allow for comparison. This research explores the use of matrix-assisted laser desorption/ionisation mass spectrometry (MALDI-MS) profiling and imaging for the analysis of fingermarks deposited on polymer banknotes. The proposed methodology was able to obtain both physical and chemical information from fingermarks deposited in a range of scenarios including; different note areas, depletion series, aged samples and following conventional FETs. The analysis of forensically important molecular targets within these fingermarks was also explored, focussing specifically on cocaine. The ability of MALDI-MS to provide ridge detail and chemical information highlights the forensic applicability of this technique and potential for the analysis of fingermarks deposited onto this problematic surface.
The roughening kinetics of hydrogenated graphene
Authors: Son S. , Nunes J. Figueira , Shin Y. , Lee J-H. , Casiraghi C. 
Published: June 2018

AbstractThe roughness is a common property of all growing surfaces – however, the way the roughness of a growing surface changes with time and space is uniquely related to the underlying growth process, i.e. to how the atoms stick to the surface during the first stage of nucleation. This concept allows getting insights on the nucleation process of a growing surface by measuring two scaling exponents, α and β, known as roughness and growth exponents, respectively. In this work, we studied hydrogenation of graphene using the roughening kinetics. The coverage of graphene will depend on how the H ions stick on the surface, giving rise to a unique roughness evolution in time and space. We measured a roughness exponent of ~0.5 (derived from a Fourier index of ~3), and a growth exponent of ~0.3. The values of the growth and roughness exponents are close to those reported for clustered carbon, suggesting a roughening mechanism by clustering, in good agreement with the theory. We also compared our coverage data with a different model, used to describe the dynamics of graphene coverage, during chemical vapour deposition. Our data are in agreement with a nucleation-dominated growth, further confirming that hydrogenation is happening by clustering.
Association of isolated minor nonspecific ST-T abnormalities with left ventricular hypertrophy and diastolic dysfunction
Authors: Kang Jeong Gyu , Chang Yoosoo , Sung Ki-Chul , Kim Jang-Young , Shin Hocheol , Ryu Seungho 
Published: June 2018

AbstractThe aim of this study was to examine the associations of isolated minor nonspecific ST-T abnormalities (NSSTTA) on 12-lead electrocardiogram (ECG) with left ventricular (LV) diastolic function and LV geometry on echocardiography. A cross-sectional study comprised of 74,976 Koreans who underwent ECG and echocardiography as part of a comprehensive health examination between March 2011 and December 2014. ECG was coded using Minnesota Code criteria. The frequencies of NSSTTA, impaired LV relaxation, and echocardiographic LVH were 1,139 (1.5%), 21,118 (28.2%), and 1,687 (2.3%) patients, respectively. The presence of NSSTTA was positively associated with the prevalence of impaired LV relaxation and LVH on echocardiography. In a multivariable-adjusted model, the odds ratio (95% CIs) comparing patients with NSSTTA to control patients was 1.55 (1.33–1.80) for impaired LV relaxation and 3.15 (2.51–3.96) for echocardiographic LVH. The association between NSSTTA and impaired LV relaxation was stronger in the intermediate to high cardiovascular disease-risk group than in the low-risk group according to Framingham Risk Score stratification (P for interaction = 0.02). NSSTTA were associated with increased prevalence of impaired LV relaxation and LVH, suggesting NSSTTA as an early indicator of subclinical cardiac dysfunction and geometric abnormalities.
High capacity and stable all-solid-state Li ion battery using SnO2-embedded nanoporous carbon
Authors: Notohara Hiroo , Urita Koki , Yamamura Hideyuki , Moriguchi Isamu 
Published: June 2018

AbstractExtensive research efforts are devoted to development of high performance all-solid-state lithium ion batteries owing to their potential in not only improving safety but also achieving high stability and high capacity. However, conventional approaches based on a fabrication of highly dense electrode and solid electrolyte layers and their close contact interface is not always applicable to high capacity alloy- and/or conversion-based active materials such as SnO2 accompanied with large volume change in charging-discharging. The present work demonstrates that SnO2-embedded nanoporous carbons without solid electrolyte inside the nanopores are a promising candidate for high capacity and stable anode material of all-solid-state battery, in which the volume change reactions are restricted in the nanopores to keep the constant electrode volume. A prototype all-solid-state full cell consisting of the SnO2-based anode and a LiNi1/3Co1/3Mn1/3O2-based cathode shows a good performance of 2040 Wh/kg at 268.6 W/kg based on the anode material weight.
Optimized protocol for combined PALM-dSTORM imaging
Authors: Glushonkov O. , Réal E. , Boutant E. , Mély Y. , Didier P. 
Published: June 2018

AbstractMulti-colour super-resolution localization microscopy is an efficient technique to study a variety of intracellular processes, including protein-protein interactions. This technique requires specific labels that display transition between fluorescent and non-fluorescent states under given conditions. For the most commonly used label types, photoactivatable fluorescent proteins and organic fluorophores, these conditions are different, making experiments that combine both labels difficult. Here, we demonstrate that changing the standard imaging buffer of thiols/oxygen scavenging system, used for organic fluorophores, to the commercial mounting medium Vectashield increased the number of photons emitted by the fluorescent protein mEos2 and enhanced the photoconversion rate between its green and red forms. In addition, the photophysical properties of organic fluorophores remained unaltered with respect to the standard imaging buffer. The use of Vectashield together with our optimized protocol for correction of sample drift and chromatic aberrations enabled us to perform two-colour 3D super-resolution imaging of the nucleolus and resolve its three compartments.
Comparative transcriptome analysis of Sogatella furcifera (Horváth) exposed to different insecticides
Authors: Zhou Cao , Yang Hong , Wang Zhao , Long Gui-yun , Jin Dao-chao 
Published: June 2018

AbstractWhite-backed planthopper, Sogatella furcifera (Horváth) (Hemiptera: Delphacidae), one of the main agricultural insect pests in China, is resistant to a wide variety of insecticides. We used transcriptome analysis to compare the expression patterns of resistance- and stress-response genes in S. furcifera subjected to imidacloprid, deltamethrin, and triazophos stress, to determine the molecular mechanisms of resistance to these insecticides. A comparative analysis of gene expression under imidacloprid, deltamethrin, and triazophos stress revealed 1,123, 841, and 316 upregulated unigenes, respectively, compared to the control. These upregulated genes included seven P450s (two CYP2 clade, three CYP3 clade, and two CYP4 clade), one GST, one ABC transporter (ABCF), and seven Hsps (one 90 and six Hsp70s) under imidacloprid stress; one P450 (CYP3 clade), two ABC transporters (one ABCF and one ABCD), and one Hsp (Hsp90) under deltamethrin stress; one P450 (CYP3 clade) and one ABC transporter (ABCF) under triazophos stress. In addition, 80 genes were commonly upregulated in response to the three insecticide treatments, including laminin, larval cuticle protein, and fasciclin, which are associated with epidermal formation. These results provide a valuable resource for the molecular characterisation of insecticide action in S. furcifera, especially the molecular characteristics of insecticide cross resistance.