bluuebunny/crossref_metadata_2025_split huggingface dataset:
Astaxanthin suppresses the metastasis of colon cancer by inhibiting the MYC-mediated downregulation of microRNA-29a-3p and microRNA-200a
Authors: Kim Hye-Youn , Kim Young-Mi , Hong Suntaek 
Published: July 2019

AbstractColorectal cancer (CRC) is the third most common cancer, and is associated with a high percentage of cancer-related death globally. Furthermore, the success rate of therapeutic treatment for CRC patients mainly depends on the status of metastasis. Therefore, novel drugs or therapeutic techniques should be discovered for the treatment of metastatic CRC. In this study, we selected Astaxanthin (AXT), one of the most common carotenoids, as a novel metastasis inhibitor through high-throughput drug screening based on invadopodia staining, and confirmed the anti-migratory and anti-invasive activity of AXT. We demonstrated that AXT increases miR-29a-3p and miR-200a expression, and thereby suppresses the expression of MMP2 and ZEB1, respectively. As a result, AXT represses the epithelial-mesenchymal transition (EMT) of CRC cells. Through the mechanistic study, we identified that AXT shows anti-metastatic activity through the transcriptional repression of MYC transcription factor. Finally, we also confirmed that AXT suppresses the in vivo metastatic capacity of colon cancer cell using mouse model. Collectively, we uncovered the novel function of AXT in the inhibition of EMT and invadopodia formation, implicating the novel therapeutic potential for AXT in metastatic CRC patients.
Vertebrates originally possess four functional subtypes of G protein-coupled melatonin receptor
Authors: Sakai Kotowa , Yamamoto Yuya , Ikeuchi Toshitaka 
Published: July 2019

AbstractMelatonin receptors (MTNRs) belonging to the G protein-coupled receptor family are considered to consist of three subtypes in vertebrates: MTNR1a, MTNR1b and MTNR1c. Additionally, MTNR1a-like genes have been identified in teleostean species as a fish-specific subtype of MTNR1a. However, similar molecules to this MTNR1a-like gene can be found in some reptiles upon searching the DNA database. We hypothesized that a vertebrate can essentially have four functional subtypes of MTNR as ohnologs. Thus, in the present study we examined the molecular phylogeny, expression patterns and pharmacological profile(s) using the teleost medaka (Oryzias latipes). The four conserved subtypes of MTNR (MTNR1a, MTNR1b, MTNR1c and MTNR1a-like) in vertebrates were classified based on synteny and phylogenetic analysis. The fourth MTNR, termed MTNR1a-like, could be classified as MTNR1d. It was observed by using RT-qPCR that expression patterns differed amongst these subtypes. Moreover, mtnr1a, mtnr1c and mtnr1a-like/mtnr1d expression was elevated during short days compared to long days in diencephalons. All the subtypes were activated by melatonin and transduced signals into the Gi pathway, to perform a cAMP-responsive reporter gene assay. It was shown that MTNR originally consisted of four subtypes: MTNR1a, MTNR1b, MTNR1c and MTNR1d. These subtypes were functional, at least in fish, although some organisms, including mammals, have lost one or two subtypes.
Impact of desertification on soil and plant nutrient stoichiometry in a desert grassland
Authors: An Hui , Tang Zhuangsheng , Keesstra Saskia , Shangguan Zhouping 
Published: July 2019

AbstractGrassland degradation resulting from desertification often alters the carbon (C), nitrogen (N) and phosphorus (P) cycles within grassland ecosystems. To estimate the effects of desertification on the C, N, and P concentrations and C:N:P stoichiometry of plants and soil, we examined C, N, and P concentrations in plant tissues (leaves, roots and litter) and soil across five degrees of desertification in the desert grassland of Ningxia, China (control, light, moderate, severe and very severe desertification stages). The C, N, and P concentrations and C:N:P stoichiometry of the leaves, roots and litter differed among the different desertification stages. Desertification resulted in opposing trends between the leaf N concentration and leaf C:N ratio. With the exception of the very severe desertification stage, the leaf N:P ratio decreased over the process of grassland desertification. The soil C, N, and P concentrations and soil N:P and C:P ratios decreased significantly along the grassland desertification gradient. In contrast, the soil C:N ratio remained relatively stable during desertification (10.85 to 11.48). The results indicate that desertification is unfavourable to C and N fixation and has a negative effect on the ecosystem structure and function of desert grassland.
Dual-neodymium magnet-based microfluidic separation device
Authors: Kye Hyeon Gi , Park Byeong Seon , Lee Jong Min , Song Min Gyu , Song Han Gyeol , Ahrberg Christian D. , Chung Bong Geun 
Published: July 2019

AbstractMicrofluidic-based separation methods have been highlighted for a number of biological applications, such as single cell analysis, disease diagnostics, and therapeutics. Although a number of previous studies have been carried out to minimize the physical damage and chemical deformations of the sample during the separation process, it still remains a challenge. In this paper, we developed a microfluidic device with dual-neodymium magnet-based negative magnetophoresis for the separation of the microparticles and cells. The poly(ethylene oxide) (PEO) was added to the solution to increase the viscoelasticity of the medium which could assist the sorting of the microparticles in the microfluidic device even at low flow rates, while minimizing damage to the cells and microparticles. Following this method, it was possible to separate 10 and 16 μm microparticles with high efficiency of 99 ± 0.1%, and 97 ± 0.8%, respectively. We also demonstrated the separation of glioblastoma cancer cells and neural stem cells (NSCs) in the microfluidic device.
RETRACTED ARTICLE: Doubled haploid production in alfalfa (Medicago sativa L.) through isolated microspore culture
Authors: Yi Dengxia , Sun Jifeng , Su Yanbin , Tong Zongyong , Zhang Tiejun , Wang Zan 
Published: July 2019

AbstractRapid production of doubled haploids (DHs) through isolated microspore culture is an important and promising method for genetic study of alfalfa. To induce embryogenesis in alfalfa, isolated microspores were submitted to abiotic stresses during their initial culture, in order to stimulate them to form embryos and plantlets. ‘Baoding’ and ‘Zhongmu No 1’ alfalfa cultivars supported reproducible and reliable proliferation response irrespective of any stress treatment of microspores. The microspore developmental stage for isolated microspore culture was studied and we found that uninucleate microspores were best to initiate culture. Exposure of microspores to appropriate low temperature or heat shock stresses were able to increase the efficiency of embryogenesis. The most effective low-temperature treatment was 4 °C for 24 h and the frequency of plantlets induction was 20.0%. The most effective heat shock treatment was 32 °C for 2 d and the frequency of plantlets induction was 14.17%. The analysis of ploidy level performed by flow cytometer revealed that the majority of 278 regenerated plantlets were haploid (65.83%) or doubled haploid (33.81%). This is the first report of haploid production in alfalfa through isolated microspore culture.
Tailoring phononic, electronic, and thermoelectric properties of orthorhombic GeSe through hydrostatic pressure
Authors: Yuan Kunpeng , Sun Zhehao , Zhang Xiaoliang , Tang Dawei 
Published: July 2019

AbstractIn this paper, we systematically investigate the effect of hydrostatic pressure on the phononic and electronic transport properties of orthorhombic p-type GeSe using first-principles based Boltzmann transport equation approach. It is found that the lattice thermal conductivities along the a and c directions increase with pressure, whereas it experiences a decrease along the b direction. This anomalous pressure dependent lattice thermal conductivity is attributed to the combined effect of enhanced phonon group velocity and reduced phonon lifetime. Additionally, the optical phonon branches have remarkable contributions to the total lattice thermal conductivity. The electronic transport calculations indicate that the Seebeck coefficient undergoes a sign change from p-type to n-type along the a direction under pressure, and a dramatic enhancement of the power factor is observed due to the boost of electrical conductivity. The predicted ZT values along the a, b, and c directions are 1.54, 1.09, and 1.01 at 700 K and 8 GPa, respectively, which are about 14, 7.3, and 1.9 times higher than those at zero pressure at experimental carrier concentration of ~1018 cm−3. Our study is expected to provide a guide for further optimization of the thermal and charge transport properties through hydrostatic pressure.
Plasma-derived extracellular vesicles yield predictive markers of cranial irradiation exposure in mice
Authors: Hinzman Charles P. , Baulch Janet E. , Mehta Khyati Y. , Girgis Michael , Bansal Shivani , Gill Kirandeep , Li Yaoxiang , Limoli Charles L. , Cheema Amrita K. 
Published: July 2019

AbstractIonizing radiation exposure to the brain is common for patients with a variety of CNS related malignancies. This exposure is known to induce structural and functional alterations to the brain, impacting dendritic complexity, spine density and inflammation. Over time, these changes are associated with cognitive decline. However, many of these impacts are only observable long after irradiation. Extracellular vesicles (EVs) are shed from cells in nearly all known tissues, with roles in many disease pathologies. EVs are becoming an important target for identifying circulating biomarkers. The aim of this study is to identify minimally invasive biomarkers of ionizing radiation damage to the CNS that are predictors of late responses that manifest as persistent cognitive impairments. Using a clinically relevant 9 Gy irradiation paradigm, we exposed mice to cranial (head only) irradiation. Using metabolomic and lipidomic profiling, we analyzed their plasma and plasma-derived EVs two days and two weeks post-exposure to detect systemic signs of damage. We identified significant changes associated with inflammation in EVs. Whole-plasma profiling provided further evidence of systemic injury. These studies are the first to demonstrate that profiling of plasma-derived EVs may be used to study clinically relevant markers of ionizing radiation toxicities to the brain.
Outcome of stage IV cancer patients receiving in-hospital cardiopulmonary resuscitation: a population-based cohort study
Authors: Lee Meng-Rui , Yu Kai-Lun , Kuo Hung-Yang , Liu Tsung-Hao , Ko Jen-Chung , Tsai Jaw-Shiun , Wang Jann-Yuan 
Published: July 2019

AbstractThe effects of cardiopulmonary resuscitation (CPR) on patients with advanced cancer remain to be elucidated. We identified a cohort of patients with stage-IV cancer who received in-hospital CPR from the Taiwan Cancer Registry and National Health Insurance claims database, along with a matched cohort without cancer who also received in-hospital CPR. The main outcomes were post-discharge survival and in-hospital mortality. In total, 3,446 stage-IV cancer patients who underwent in-hospital CPR after cancer diagnosis were identified during January 2009–June 2014. A vast majority of the patients did not survive to discharge (n = 2,854, 82.8%). The median post-discharge survival was 22 days; 10.1% (n = 60; 1.7% of all patients) of the hospital survivors received anticancer therapy after discharge. We created 1:1 age–, sex–, Charlson comorbidity index (CCI)–, and year of CPR–matched noncancer and stage-IV cancer cohorts (n = 3,425 in both; in-hospital mortality rate = 82.1% and 82.8%, respectively). Regression analysis showed that the stage-IV cancer cohort had shorter post-discharge survival than did the noncancer cohort. The outcome of patients with advanced cancer was poor. Even among the survivors, post-discharge survival was short, with only few patients receiving further anticancer therapy.
Power-spectra and cross-frequency coupling changes in visual and Audio-visual acquired equivalence learning
Authors: Puszta András , Pertich Ákos , Katona Xénia , Bodosi Balázs , Nyujtó Diána , Giricz Zsófia , Eördegh Gabriella , Nagy Attila 
Published: July 2019

AbstractThe three phases of the applied acquired equivalence learning test, i.e. acquisition, retrieval and generalization, investigate the capabilities of humans in associative learning, working memory load and rule-transfer, respectively. Earlier findings denoted the role of different subcortical structures and cortical regions in the visual test. However, there is a lack of information about how multimodal cues modify the EEG-patterns during acquired equivalence learning. To test this we have recorded EEG from 18 healthy volunteers and analyzed the power spectra and the strength of cross-frequency coupling, comparing a unimodal visual-guided and a bimodal, audio-visual-guided paradigm. We found that the changes in the power of the different frequency band oscillations were more critical during the visual paradigm and they showed less synchronized activation compared to the audio-visual paradigm. These findings indicate that multimodal cues require less prominent, but more synchronized cortical contribution, which might be a possible biomarker of forming multimodal associations.
His6, His13, and His14 residues in Aβ 1–40 peptide significantly and specifically affect oligomeric equilibria
Authors: Przygońska Kaja , Pacewicz Magdalena , Sadowska Wiktoria , Poznański Jarosław , Bal Wojciech , Dadlez Michał 
Published: July 2019

AbstractOligomers of Aβ peptide are implicated as the most probable causative agent in Alzheimer’s disease. However, their structural properties remain elusive due to the dynamic and heterogeneous character of oligomeric species coexisting in solution. Nevertheless, new approaches, mainly based on mass spectrometry, provide unique access to these different structural forms. Using these methods, we previously showed that the N-terminal, non-amyloidogenic region of Aβ is involved in the network of interactions specifically stabilizing oligomers. In the present study, we identified three histidine residues as active participants in this network. Detailed knowledge of the structural features that are potentially important for oligomer-mediated neurotoxicity is a prerequisite for the rational design of oligomerization modifiers.
Performance of a new quantitative computed tomography index for interstitial lung disease assessment in systemic sclerosis
Authors: Bocchino Marialuisa , Bruzzese Dario , D’Alto Michele , Argiento Paola , Borgia Alessia , Capaccio Annalisa , Romeo Emanuele , Russo Barbara , Sanduzzi Alessandro , Valente Tullio , Sverzellati Nicola , Rea Gaetano , Vettori Serena 
Published: July 2019

AbstractQuantitative high resolution computed tomography (HRCT) may objectively assess systemic sclerosis (SSc)-interstitial lung disease (ILD) extent, using three basic densitometric measures: mean lung attenuation (MLA), skewness, and kurtosis. This prospective study aimed to develop a composite index - computerized integrated index (CII) – that accounted for MLA, skewness, and kurtosis by means of Principal Component Analysis over HRCTs of 83 consecutive SSc subjects, thus eliminating redundancies. Correlations among CII, cardiopulmonary function and immune-inflammatory biomarkers (e.g. sIL-2Rα and CCL18 serum levels) were explored. ILD was detected in 47% of patients at visual HRCT assessment. These patients had worse CII values than patients without ILD. The CII correlated with lung function at both baseline and follow-up, and with sIL-2Rα and CCL18 serum levels. The best discriminating CII value for ILD was 0.1966 (AUC = 0.77; sensitivity = 0.81 [95%CI:0.68–0.92]; specificity = 0.66 [95%CI:0.52–0.80]). Thirty-four percent of patients without visual trace of ILD had a CII lower than 0.1966, and 67% of them had a diffusing lung capacity for CO <80% of predicted. We showed that this new composite CT index for SSc-ILD assessment correlates with both lung function and immune-inflammatory parameters and could be sufficiently sensitive for capturing early lung density changes in visually ILD-free patients.
Impact of climate change and urban development on the flora of a southern European city: analysis of biodiversity change over a 120-year period
Authors: Salinitro Mirko , Alessandrini Alessandro , Zappi Alessandro , Tassoni Annalisa 
Published: July 2019

AbstractEcological studies in cities are not only aimed at investigating floristic diversity, but also represent informative test cases for understanding ecological system dynamics and responses to urban and climate changes since cities represent microcosms of environmental changes happening globally. The city of Bologna was selected as a case study since two specific and complete studies have been carried out in a 120-years timespan, one in 1894 and one in 2018. Since 1894, a large increase occurred in the number of taxa (families from 41 to 101, species from 176 to 477) and alien species (from 22 to 144), with a 65% total species turnover. The comparison of species life forms pointed out a noticeable recent expansion of phanerophytes and geophytes at the expense of therophytes and hemicryptophytes. The correlation between urbanistic features and plant richness indicated that the main factor affecting plant richness is the presence of green spaces (parks, tree lines, flowerbeds, etc.). Analysis of variation in Ellenberg’s indicator values over the last 120 years evidenced a shift toward shade-tolerant species, mainly connected to the increased presence of parks and trees within the city. Climate change and the presence of artificially irrigated areas within the city has led to an increase in both hygrophilous and drought-resistant species. In particular, the temperature index showed a significantly higher amount of macrothermal species in accordance with a warmer climate and the urban heat island effect.
Room temperature Co-doped manganite/graphene sensor operating at high pulsed magnetic fields
Authors: Lukose Rasuole , Zurauskiene Nerija , Stankevic Voitech , Vagner Milita , Plausinaitiene Valentina , Niaura Gediminas , Kersulis Skirmantas , Balevicius Saulius , Bolli Eleonora , Mezzi Alessio , Kaciulis Saulius 
Published: July 2019

AbstractThe demand to increase the sensitivity to magnetic field in a broad magnetic field ranges has led to the research of novel materials for sensor applications. Therefore, the hybrid system consisting of two different magnetoresistive materials – nanostructured Co-doped manganite La1−xSrx(Mn1−yCoy)zO3 and single- and few-layer graphene – were combined and investigated as potential system for magnetic field sensing. The negative colossal magnetoresistance (CMR) of manganite-cobaltite and positive one of graphene gives the possibility to increase the sensitivity to magnetic field of the hybrid sensor. The performed magnetoresistance (MR) measurements of individual few layer (n = 1–5) graphene structures revealed the highest MR values for three-layer graphene (3LG), whereas additional Co-doping increased the MR values of nanostructured manganite films. The connection of 3LG graphene and Co-doped magnanite film in a voltage divider configuration significantly increased the sensitivity of the hybrid sensor at low and intermediate magnetic fields (1–2 T): 70 mV/VT of hybrid sensor in comparison with 56 mV/VT for 3LG and 12 mV/VT for Co-doped magnanite film, respectively, and broadened the magnetic field operation range (0.1–20) T of the produced sensor prototype.
Pharmacokinetics of anti-infectious reagents in silkworms
Authors: Hamamoto Hiroshi , Horie Ryo , Sekimizu Kazuhisa 
Published: July 2019

AbstractSilkworm microorganism infection models are useful for screening novel therapeutically effective antimicrobial agents. In this study, we used silkworms to investigate the pharmacokinetics and metabolism of antimicrobial agents, in which cytochrome P450 plays a major role. The pharmacokinetic parameters of the antimicrobial agents were determined based on their concentrations in the hemolymph after administration. The parameters, such as half-lives and distribution volumes, in silkworm were consistent with those in mammalian models. In addition, antifungal agents with reduced therapeutic effectiveness due to high protein-binding capacities in mammalian serum exhibited similar features in silkworm hemolymph. Cytochrome P450 enzymes, which metabolize exogenous compounds in mammalian liver, were distributed mainly in the silkworm midgut. Most of the compounds metabolized by cytochrome P450 in humans are also metabolized in the silkworm midgut. These findings suggest that the pharmacokinetics of antimicrobial agents are fundamentally similar between silkworms and mammals, and that therapeutic effects in the silkworm infection model reflect the pharmacokinetics of the test samples.
A New Analytic Formula for Minority Carrier Decay Length Extraction from Scanning Photocurrent Profiles in Ohmic-Contact Nanowire Devices
Authors: Chu Cheng-Hao , Mao Ming-Hua , Yang Che-Wei , Lin Hao-Hsiung 
Published: July 2019

AbstractSpatially resolved current measurements such as scanning photocurrent microscopy (SPCM) have been extensively applied to investigate carrier transport properties in semiconductor nanowires. A traditional simple-exponential-decay formula based on the assumption of carrier diffusion dominance in the scanning photocurrent profiles can be applied for carrier diffusion length extraction using SPCM in Schottky-contact-based or p-n junction-based devices where large built-in electric fields exist. However, it is also important to study the electric-field dependent transport properties in widely used ohmic-contact nanowire devices where the assumption of carrier diffusion dominance is invalid. Here we derive an analytic formula for scanning photocurrent profiles in such ohmic-contact nanowire devices under uniform applied electric fields and weak optical excitation. Under these operation conditions and the influence of photo-carrier-induced electric field, the scanning photocurrent profile and the carrier spatial distribution strikingly do not share the same functional form. Instead, a surprising new analytic relation between the scanning photocurrent profile and the minority carrier decay length was established. Then the derived analytic formula was validated numerically and experimentally. This analytic formula provides a new fitting method for SPCM profiles to correctly determine the minority carrier decay length, which allows us to quantitatively evaluate the performance of nanowire-based devices.
Destination choice game: A spatial interaction theory on human mobility
Authors: Yan Xiao-Yong , Zhou Tao 
Published: July 2019

AbstractWith remarkable significance in migration prediction, global disease mitigation, urban planning and many others, an arresting challenge is to predict human mobility fluxes between any two locations. A number of methods have been proposed against the above challenge, including the gravity model, the intervening opportunity model, the radiation model, the population-weighted opportunity model, and so on. Despite their theoretical elegance, all models ignored an intuitive and important ingredient in individual decision about where to go, that is, the possible congestion on the way and the possible crowding in the destination. Here we propose a microscopic mechanism underlying mobility decisions, named destination choice game (DCG), which takes into account the crowding effects resulted from spatial interactions among individuals. In comparison with the state-of-the-art models, the present one shows more accurate prediction on mobility fluxes across wide scales from intracity trips to intercity travels, and further to internal migrations. The well-known gravity model is proved to be the equilibrium solution of a degenerated DCG neglecting the crowding effects in the destinations.