bluuebunny/crossref_metadata_2025_split huggingface dataset:
Behavioural oscillations in visual orientation discrimination reveal distinct modulation rates for both sensitivity and response bias
Authors: Zhang Huihui , Morrone Maria Concetta , Alais David 
Published: February 2019

AbstractPerception is modulated by ongoing brain oscillations. Psychophysical studies show a voluntary action can synchronize oscillations, producing rhythmical fluctuations of visual contrast sensitivity. We used signal detection to examine whether voluntary action could also synchronize oscillations in decision criterion, and whether that was due to the oscillations of perceptual bias or of motor bias. Trials started with a voluntary button-press. After variable time lags, a grating at threshold contrast was presented briefly and participants discriminated its orientation (45° or −45°) with a mouse-click. Two groups of participants completed the experiment with opposite mappings between grating orientations and response buttons. We calculated sensitivity and criterion in the 800 ms period following the button press. To test for oscillations, we fitted first-order Fourier series to these time series. Alpha oscillations occurred in both sensitivity and criterion at different frequencies: ~8 Hz (sensitivity) and ~10 Hz (criterion). Sensitivity oscillations had the same phase for both stimulus-response mappings. Criterion oscillations, however, showed a strong anti-phase relationship when the two groups were compared, suggesting a motor bias rather than perceptual bias. Our findings suggest two roles for alpha oscillations: in sensitivity, reflecting rhythmic attentional inhibition, and in criterion, indicating dynamic motor-related anticipation or preparation.
Assessing and Reporting Household Chemicals as a Novel Tool to Mitigate Pesticide Residues in Spinach (Spinacia oleracea)
Authors: Amir Rai Muhammad , Randhawa Muhammad Atif , Nadeem Muhammad , Ahmed Anwaar , Ahmad Asif , Khan Moazzam Rafiq , Khan Muhammad Asif , Kausar Rukhsana 
Published: February 2019

AbstractNon-selective use of pesticide to increase productivity leaves residues on crops. These pesticides after consumption have a detrimental effect on human health and their intake can lead to various diseases such as kidney damage, neurological disorders, cardiovascular diseases, circulatory and reproductive problems. The recent study was designed to assess the effects of household processing treatments such as acidic solutions (acidic acid and citric acid), alkaline solutions (sodium chloride and sodium carbonate) and biological solutions (radish, ginger, garlic, and lemon extracts) were evaluated for their efficiency for removal of pesticides in spinach by gas chromatography with electron capture detector (GC-ECD). The results showed that pesticide residues were sharply reduced when spinach was exposed to washing treatments. The results showed that the greatest reduction of deltamethrin, cypermethrin, chlorpyrifos and endosulfan with 10% acetic acid was (79.68 ± 0.81%), (89.99 ± 0.12%), (94.21 ± 0.02%) and (70.32 ± 0.25%), respectively of tested washing solutions. The acidic solutions were more effective than alkaline and biological extracts in the removal of pesticide residues. The average reduction in various washing solutions ranged from 10.21 to 79.68%, 22.60 to 89.48%, 22.95 to 94-21% and 11.24–70.32% for the removal of deltamethrin, cypermethrin, chlorpyrifos, and endosulfan, respectively.
3-ketodihydrosphingosine reductase mutation induces steatosis and hepatic injury in zebrafish
Authors: Park Ki-Hoon , Ye Zhi-wei , Zhang Jie , Hammad Samar M. , Townsend Danyelle M. , Rockey Don C. , Kim Seok-Hyung 
Published: February 2019

Abstract3-ketodihydrosphingosine reductase (KDSR) is the key enzyme in the de novo sphingolipid synthesis. We identified a novel missense kdsrI105R mutation in zebrafish that led to a loss of function, and resulted in progression of hepatomegaly to steatosis, then hepatic injury phenotype. Lipidomics analysis of the kdsrI105R mutant revealed compensatory activation of the sphingolipid salvage pathway, resulting in significant accumulation of sphingolipids including ceramides, sphingosine and sphingosine 1-phosphate (S1P). Ultrastructural analysis revealed swollen mitochondria with cristae damage in the kdsrI105R mutant hepatocytes, which can be a cause of hepatic injury in the mutant. We found elevated sphingosine kinase 2 (sphk2) expression in the kdsrI105R mutant. Genetic interaction analysis with the kdsrI105R and the sphk2wc1 mutants showed that sphk2 depletion suppressed liver defects observed in the kdsrI105R mutant, suggesting that liver defects were mediated by S1P accumulation. Further, both oxidative stress and ER stress were completely suppressed by deletion of sphk2 in kdsrI105R mutants, linking these two processes mechanistically to hepatic injury in the kdsrI105R mutants. Importantly, we found that the heterozygous mutation in kdsr induced predisposed liver injury in adult zebrafish. These data point to kdsr as a novel genetic risk factor for hepatic injury.
Tailoring modal properties of inhibited-coupling guiding fibers by cladding modification
Authors: Osório Jonas H. , Chafer Matthieu , Debord Benoît , Giovanardi Fabio , Cordier Martin , Maurel Martin , Delahaye Frédéric , Amrani Foued , Vincetti Luca , Gérôme Frédéric , Benabid Fetah 
Published: February 2019

AbstractUnderstanding cladding properties is crucial for designing microstructured optical fibers. This is particularly acute for Inhibited-Coupling guiding fibers because of the reliance of their core guidance on the core and cladding mode-field overlap integral. Consequently, careful planning of the fiber cladding parameters allows obtaining fibers with optimized characteristics such as low loss and broad transmission bandwidth. In this manuscript, we report on how one can tailor the modal properties of hollow-core photonic crystal fibers by adequately modifying the fiber cladding. We show that the alteration of the position of the tubular fibers cladding tubes can alter the loss hierarchy of the modes in these fibers, and exhibit salient polarization propriety. In this context, we present two fibers with different cladding structures which favor propagation of higher order core modes – namely LP11 and LP21 modes. Additionally, we provide discussions on mode transformations in these fibers and show that one can obtain uncommon intensity and polarization profiles at the fiber output. This allows the fiber to act as a mode intensity and polarization shaper. We envisage this novel concept can be useful for a variety of applications such as hollow core fiber based atom optics, atom-surface physics, sensing and nonlinear optics.
Skeletal determinants of tail length are different between macaque species groups
Authors: Wakamori Hikaru , Hamada Yuzuru 
Published: February 2019

AbstractMacaques (genus Macaca) are known to have wide variation in tail length. Within each species group tail length varies, which could be associated with a phylogenetic trend seen in caudal vertebral morphology. We compared numbers and lengths of caudal vertebrae in species of the fascicularis group, M. assamensis (sinica group), M. nemestrina (silenus group), and those obtained from reports for an additional 11 species. Our results suggest different trends in number and lengths. The caudal vertebral length profiles revealed upward convex patterns for macaques with relative tail lengths of ≥15%, and flat to decreasing for those with relative tail lengths of ≤12%. They varied between species groups in terms of the lengths of proximal vertebrae, position and length of the longest vertebra, numbers and lengths of distal vertebrae, and total number of vertebrae. In silenus and sinica group, the vertebral length is the major skeletal determinant of tail length. On the other hand, the vertebral number is the skeletal determinant of tail length in the fascicularis group. Tail length variation among species groups are caused by different mechanisms which reflect the evolutionary history of macaques.
Uniform magnetic force impact on water based nanofluid thermal behavior in a porous enclosure with ellipse shaped obstacle
Authors: Sheikholeslami M. , Shah Zahir , Shafee Ahmad , Khan Ilyas , Tlili Iskander 
Published: February 2019

AbstractIn the present research, aluminum oxide- water (Al2O3-H2O) nanofluid free convection due to magnetic forces through a permeable cubic domain with ellipse shaped obstacle has been reported. Lattice Boltzmann approach is involved to depict the impacts of magnetic, buoyancy forces and permeability on nanoparticles migration. To predict properties of Al2O3- water nanofluid, Brownian motion impact has been involved. Outcomes revels that considering higher magnetic forces results in greater conduction mechanism. Permeability can enhance the temperature gradient.
Activity-induced MEMRI cannot detect functional brain anomalies in the APPxPS1-Ki mouse model of Alzheimer’s disease
Authors: Androuin Alexandre , Abada Yah-se , Ly Myriam , Santin Mathieu , Petiet Alexandra , Epelbaum Stéphane , Bertrand Anne , Delatour Benoît 
Published: February 2019

AbstractAlzheimer’s disease (AD) is the most common cause of dementia. Aside neuropathological lesions, abnormal neuronal activity and brain metabolism are part of the core symptoms of the disease. Activity-induced Manganese-Enhanced Magnetic Resonance Imaging (MEMRI) has been proposed as a powerful approach to visualize evoked brain activity in rodents. Here, we evaluated the relevance of MEMRI in measuring neuronal (dys-)function in the APPxPS1 knocked-in (KI) mouse model of AD. Brain anomalies were firstly demonstrated in APPxPS1-Ki mice using cognitive testing (memory impairment) and histological mapping of immediate early gene products (decreased density of fos-positive neurons). Paradoxically, MEMRI analyses were not able to confirm the occurrence of neuronal hypoactivities in vivo. We then performed a neuropathological analysis that highlighted an abnormal increased permeability of the blood-brain barrier (BBB) in APPxPS1-Ki mice. We hypothesized that diffuse weakening of the BBB results in an uncontrolled diffusion of the MR contrast agent and a lack of correlation between manganese accumulation and neuronal activity. These results bring to light a limitation of the activity-induced MEMRI approach when applied to the APPxPS1-Ki mouse model as well as other mouse models harboring a compromised BBB.
Confining vertical conducting filament for reliable resistive switching by using a Au-probe tip as the top electrode for epitaxial brownmillerite oxide memristive device
Authors: Nallagatla Venkata Raveendra , Jo Janghyun , Acharya Susant Kumar , Kim Miyoung , Jung Chang Uk 
Published: February 2019

AbstractWe had discovered novel resistance switching phenomena in SrCoOx epitaxial thin films. We have interpreted the results in terms of the topotactic phase transformation between their insulating brownmillerite phase and the conducting perovskite phase and the existence of a rather vertical conducting filament due to its inherent layered structure. However, the rough interface observed between the SrCoOx and the Au top electrode (area ~10000 μm2) was assumed to result in the observed fluctuation in key switching parameters. In order to verify the effect of rough interface on the switching performance in the SrCoOx device, in this work, we studied the resistive switching properties of a SrCoOx device by placing a Au-coated tip (end area ~0.5 μm2) directly on the film surface as the top electrode. The resulting device displayed much improved endurance and showed high uniformity in key switching parameters as compared to the device having a large top electrode area. A simulation result confirmed that the Au-coated tip provides a local confinement of the electrical field, resulting in confinement of oxygen ion distribution and therefore localization of the conducting filament. By minimizing other free and uncontrollable parameters, the designed experiment here provides the most direct and isolated evidence that the rough interface between electrode and ReRAM matrix is detrimental for the reproducibility of resistivity switching phenomena.
Cu Transport by the Extended Family of CcoA-like Transporters (CalT) in Proteobacteria
Authors: Zhang Yang , Blaby-Haas Crysten E. , Steimle Stefan , Verissimo Andreia F. , Garcia-Angulo Victor A. , Koch Hans-Georg , Daldal Fevzi , Khalfaoui-Hassani Bahia 
Published: February 2019

AbstractComparative genomic studies of the bacterial MFS-type copper importer CcoA, required for cbb3-type cytochrome c oxidase (cbb3-Cox) biogenesis, revealed a widespread CcoA-like transporters (CalT) family, containing the conserved CcoA Cu-binding MxxxM and HxxxM motifs. Surprisingly, this family also included the RfnT-like proteins, earlier suggested to transport riboflavin. However, presence of the Cu-binding motifs in these proteins raised the possibility that they might be Cu transporters. To test this hypothesis, the genomic context of the corresponding genes was examined, and three of such genes from Ochrobactrum anthropi, Rhodopseudomonas palustris and Agrobacterium tumefaciens were expressed in Escherichia coli (ΔribB) and Rhodobacter capsulatus (ΔccoA) mutants. Copper and riboflavin uptake abilities of these strains were compared with those expressing R. capsulatus CcoA and Rhizobium leguminosarum RibN as bona fide copper and riboflavin importers, respectively. Overall data demonstrated that the “RfnT-like” CalT proteins are unable to efficiently transport riboflavin, but they import copper like CcoA. Nevertheless, even though expressed and membrane-localized in a R. capsulatus mutant lacking CcoA, these transporters were unable to accumulate Cu or complement for cbb3-Cox defect. This lack of functional exchangeability between the different subfamilies of CalT homologs suggests that MFS-type bacterial copper importers might be species-specific.
A distinctive DNA methylation pattern in insufficient sleep
Authors: Lahtinen Alexandra , Puttonen Sampsa , Vanttola Päivi , Viitasalo Katriina , Sulkava Sonja , Pervjakova Natalia , Joensuu Anni , Salo Perttu , Toivola Auli , Härmä Mikko , Milani Lili , Perola Markus , Paunio Tiina 
Published: February 2019

AbstractShort sleep duration or insomnia may lead to an increased risk of various psychiatric and cardio-metabolic conditions. Since DNA methylation plays a critical role in the regulation of gene expression, studies of differentially methylated positions (DMPs) might be valuable for understanding the mechanisms underlying insomnia. We performed a cross-sectional genome-wide analysis of DNA methylation in relation to self-reported insufficient sleep in individuals from a community-based sample (79 men, aged 39.3 ± 7.3), and in relation to shift work disorder in an occupational cohort (26 men, aged 44.9 ± 9.0). The analysis of DNA methylation data revealed that genes corresponding to selected DMPs form a distinctive pathway: “Nervous System Development” (FDR P value < 0.05). We found that 78% of the DMPs were hypomethylated in cases in both cohorts, suggesting that insufficient sleep may be associated with loss of DNA methylation. A karyoplot revealed clusters of DMPs at various chromosomal regions, including 12 DMPs on chromosome 17, previously associated with Smith-Magenis syndrome, a rare condition comprising disturbed sleep and inverse circadian rhythm. Our findings give novel insights into the DNA methylation patterns associated with sleep loss, possibly modifying processes related to neuroplasticity and neurodegeneration. Future prospective studies are needed to confirm the observed associations.
Usefulness of continuous probability distributions of rates for modelling radionuclide biokinetics in humans and animals
Authors: Shuryak Igor , Dadachova Ekaterina 
Published: February 2019

AbstractModelling the biokinetics of radionuclide excretion or retention is important in nuclear medicine and following accidental/malicious radioactivity releases. Sums of discrete exponential decay rates are often used, but we hypothesized that continuous probability distributions (CPD) of decay rates can describe the data more parsimoniously and robustly. We tested this hypothesis on diverse human and animal data sets involving various radionuclides (including plutonium, strontium, caesium) measured in the laboratory and in regions contaminated by the Fukushima and Chernobyl nuclear accidents. We used four models on each data set: mono-exponential (ME) with one discrete decay rate, bi-exponential (BE) with two rates, gamma-exponential (GE) with a Gamma distribution of stretched-exponential rates, and power-decay (PD) with a Gamma distribution of power-decay rates. Information-theoretic model selection suggested that radionuclide biokinetics, e.g. for plutonium in humans, are often better described by CPD models like GE and PD, than by discrete rates (ME and BE). Extrapolation of models fitted to data at short times to longer times was frequently more robust for CPD formalisms. We suggest that using a set of several CPD and discrete-rate models, and comparing them by information-theoretic methods, is a promising strategy to enhance the analysis of radionuclide excretion and retention kinetics.
Effects of chronic unpredictable mild stress induced prenatal stress on neurodevelopment of neonates: Role of GSK-3β
Authors: Fatima Mahino , Srivastav Saurabh , Ahmad Mir Hilal , Mondal Amal Chandra 
Published: February 2019

AbstractPrenatal stress (PNS) has gained attention with regard to its impact on hippocampal neurogenesis in neonates which serves as a risk factor for postnatal neurodevelopmental deficits. Evidences from animal models have suggested that depression responsive hypothalamic-pituitary-adrenal (HPA) axis and its hormonal response via cortisol, is responsible for critical neurodevelopmental deficits in the offspring which is transduced due to gestational stress. But knowledge in the area of assessing the effects of maternal chronic unpredictable mild stress (CUMS) on neurogenesis and expression of some key signaling molecules in the offsprings are limited. We have used Wistar rats to induce PNS in offsprings by maternal CUMS during pregnancy. Prefrontal cortex (PFC) and hippocampus were assessed for biomarkers of oxidative stress, neurogenesis, neurodevelopmental signaling molecules and DNA damage in the male Wister offsprings. Our investigations resulted in sufficient evidences which prove how maternal psychological stress has widespread effect on the fetal outcomes via major physiological alteration in the antioxidant levels, neurogenesis, signaling molecules and DNA damage. PNS leads to the upregulation of GSK-3β which in turn inhibited mRNA and protein expressions of sonic hedgehog (SHH), β-catenin, Notch and brain derived neurotrophic factor (BDNF). The study explored multifaceted signaling molecules especially, GSK-3β responsible for crosstalks between different neurodevelopmental molecules like SHH, Notch, BDNF and β-catenin affecting neurodevelopment of the offsprings due to PNS.
Vertical Feedback Mechanism of Winter Arctic Amplification and Sea Ice Loss
Authors: Kim Kwang-Yul , Kim Ji-Young , Kim Jinju , Yeo Saerim , Na Hanna , Hamlington Benjamin D. , Leben Robert R. 
Published: February 2019

AbstractSea ice reduction is accelerating in the Barents and Kara Seas. Several mechanisms are proposed to explain the accelerated loss of Arctic sea ice, which remains to be controversial. In the present study, detailed physical mechanism of sea ice reduction in winter (December–February) is identified from the daily ERA interim reanalysis data. Downward longwave radiation is an essential element for sea ice reduction, but can primarily be sustained by excessive upward heat flux from the sea surface exposed to air in the region of sea ice loss. The increased turbulent heat flux is used to increase air temperature and specific humidity in the lower troposphere, which in turn increases downward longwave radiation. This feedback process is clearly observed in the Barents and Kara Seas in the reanalysis data. A quantitative assessment reveals that this feedback process is being amplified at the rate of ~8.9% every year during 1979–2016. Availability of excessive heat flux is necessary for the maintenance of this feedback process; a similar mechanism of sea ice loss is expected to take place over the sea-ice covered polar region, when sea ice is not fully recovered in winter.
Venus nightside surface temperature
Authors: Singh D. 
Published: February 2019

AbstractFirst global map of Venus nightside surface temperature using Akatsuki infrared measurements reveals hot Venus surface with an average surface temperature of about 698 K. Surface temperatures do not show any significant variation with changing latitudes because only a small amount (~2.5%) of solar energy reaches the surface. Surface temperatures are relatively colder at higher altitude regions as compared to lower altitude regions. However, the major temperature variation on Venus surface is governed by various lithospheric heat transport mechanisms. On a global scale, surface temperatures show a spatial variation of about 230 K.
Synchronized Orchestration of miR-99b and let-7g Positively Regulates Rotavirus Infection by Modulating Autophagy
Authors: Mukhopadhyay Urbi , Chanda Shampa , Patra Upayan , Mukherjee Arpita , Rana Santanu , Mukherjee Anupam , Chawla-Sarkar Mamta 
Published: February 2019

AbstractRotavirus (RV), the major etiological agent of viral gastroenteritis in young children, kills over 200 thousand infants each year. In spite of available vaccines, rotaviral diarrhoea is still a major problem in developing countries of Asia and Africa. Therefore, the studies on RV infection and host antiviral responses are warranted. The active correlation between virus infection and activation of autophagy machinery and positive influence of autophagy on RV replication have been documented recently. Previous study from our group showed dysregulation of several cellular miRNAs during RV infection, though their significance remained largely unknown. Since cellular microRNAs (miRNAs) have been implicated in the control of several fundamental biological processes including stress response and autophagy, we focused on two miRNAs, miR-99b and let-7g, and analyzed their function to gain insight into the miRNA-autophagy crosstalk during RV infection. This study shows that RV suppresses let-7g expression but enhances miR-99b that in turn augment major autophagy regulators. Ectopic expression of let-7g and knockdown of miR-99b resulted in inhibition of autophagy, hence, reduction of RV replication. Overall, our study highlights new mechanistic insights for understanding the role of miRNAs in modulating RV infection and possibility of using RNA interference as an antiviral therapeutic target.