bluuebunny/crossref_metadata_2025_split huggingface dataset:
Reversible, Electric-Field Induced Magneto-Ionic Control of Magnetism in Mesoporous Cobalt Ferrite Thin Films
Authors: Robbennolt Shauna , Menéndez Enric , Quintana Alberto , Gómez Andrés , Auffret Stéphane , Baltz Vincent , Pellicer Eva , Sort Jordi 
Published: July 2019

AbstractThe magnetic properties of mesoporous cobalt ferrite films can be largely tuned by the application of an electric field using a liquid dielectric electrolyte. By applying a negative voltage, the cobalt ferrite becomes reduced, leading to an increase in saturation magnetization of 15% (MS) and reduction in coercivity (HC) between 5–28%, depending on the voltage applied (−10 V to −50 V). These changes are mainly non-volatile so after removal of −10 V MS remains 12% higher (and HC 5% smaller) than the pristine sample. All changes can then be reversed with a positive voltage to recover the initial properties even after the application of −50 V. Similar studies were done on analogous films without induced porosity and the effects were much smaller, underscoring the importance of nanoporosity in our system. The different mechanisms possibly responsible for the observed effects are discussed and we conclude that our observations are compatible with voltage-driven oxygen migration (i.e., the magneto-ionic effect).
Focused very high-energy electron beams as a novel radiotherapy modality for producing high-dose volumetric elements
Authors: Kokurewicz K. , Brunetti E. , Welsh G. H. , Wiggins S. M. , Boyd M. , Sorensen A. , Chalmers A. J. , Schettino G. , Subiel A. , DesRosiers C. , Jaroszynski D. A. 
Published: July 2019

AbstractThe increased inertia of very high-energy electrons (VHEEs) due to relativistic effects reduces scattering and enables irradiation of deep-seated tumours. However, entrance and exit doses are high for collimated or diverging beams. Here, we perform a study based on Monte Carlo simulations of focused VHEE beams in a water phantom, showing that dose can be concentrated into a small, well-defined volumetric element, which can be shaped or scanned to treat deep-seated tumours. The dose to surrounding tissue is distributed over a larger volume, which reduces peak surface and exit doses for a single beam by more than one order of magnitude compared with a collimated beam.
Rotavirus Calcium Dysregulation Manifests as Dynamic Calcium Signaling in the Cytoplasm and Endoplasmic Reticulum
Authors: Chang-Graham Alexandra L. , Perry Jacob L. , Strtak Alicia C. , Ramachandran Nina K. , Criglar Jeanette M. , Philip Asha A. , Patton John T. , Estes Mary K. , Hyser Joseph M. 
Published: July 2019

AbstractLike many viruses, rotavirus (RV) dysregulates calcium homeostasis by elevating cytosolic calcium ([Ca2+]cyt) and decreasing endoplasmic reticulum (ER) stores. While an overall, monophasic increase in [Ca2+]cyt during RV infection has been shown, the nature of the RV-induced aberrant calcium signals and how they manifest over time at the single-cell level have not been characterized. Thus, we generated cell lines and human intestinal enteroids (HIEs) stably expressing cytosolic and/or ER-targeted genetically-encoded calcium indicators to characterize calcium signaling throughout RV infection by time-lapse imaging. We found that RV induces highly dynamic [Ca2+]cyt signaling that manifest as hundreds of discrete [Ca2+]cyt spikes, which increase during peak infection. Knockdown of nonstructural protein 4 (NSP4) attenuates the [Ca2+]cyt spikes, consistent with its role in dysregulating calcium homeostasis. RV-induced [Ca2+]cyt spikes were primarily from ER calcium release and were attenuated by inhibiting the store-operated calcium entry (SOCE) channel Orai1. RV-infected HIEs also exhibited prominent [Ca2+]cyt spikes that were attenuated by inhibiting SOCE, underlining the relevance of these [Ca2+]cyt spikes to gastrointestinal physiology and role of SOCE in RV pathophysiology. Thus, our discovery that RV increases [Ca2+]cyt by dynamic calcium signaling, establishes a new, paradigm-shifting understanding of the spatial and temporal complexity of virus-induced calcium signaling.
Septins organize endoplasmic reticulum-plasma membrane junctions for STIM1-ORAI1 calcium signalling
Authors: Katz Zachary B. , Zhang Chen , Quintana Ariel , Lillemeier Björn F. , Hogan Patrick G. 
Published: July 2019

AbstractORAI1 Ca2+ channels in the plasma membrane (PM) are gated by STIM1 at endoplasmic reticulum (ER)-PM junctions to effect store-dependent Ca2+ entry into cells, but little is known about how local STIM-ORAI signalling at junctions is coordinated with overall cellular architecture. Filamentous septins can specify cytoskeletal rearrangements and have been found recently to modulate STIM-ORAI signalling. Here we show by super-resolution imaging of ORAI1, STIM1, and septin 4 in living cells that septins facilitate Ca2+ signalling indirectly. Septin 4 does not colocalize preferentially with ORAI1 in resting or stimulated cells, assemble stably at ER-PM junctions, or specify a boundary that directs or confines ORAI1 to junctions. Rather, ORAI1 is recruited to junctions solely through interaction with STIM proteins, while septins regulate the number of ER-PM junctions and enhance STIM1-ORAI1 interactions within junctions. Thus septins communicate with STIM1 and ORAI1 through protein or lipid intermediaries, and are favorably positioned to coordinate Ca2+ signalling with rearrangements in cellular architecture.
Field-Dependent Heat Dissipation of Carbon Nanotube Electric Currents
Authors: Voskanian Norvik , Olsson Eva , Cumings John 
Published: July 2019

AbstractWe study heat dissipation of a multi-wall carbon nanotube (MWCNT) device fabricated from two crossed nanotubes on a SiNx substrate under the influence of a constant (DC) electric bias. By monitoring the temperature of the substrate, we observe negligible Joule heating within the nanotube lattice itself and instead heating occurs in the insulating substrate directly via a remote-scattering heating effect. Using finite element analysis, we estimate a remote heating parameter, β, as the ratio of the power dissipated directly in the substrate to the total power applied. The extracted parameters show two distinct bias ranges; a low bias regime where about 85% of the power is dissipated directly into the substrate and a high bias regime where β decreases, indicating the onset of traditional Joule heating within the nanotube. Analysis shows that this reduction is consistent with enhanced scattering of charge carriers by optical phonons within the nanotube. The results provide insights into heat dissipation mechanisms of Joule heated nanotube devices that are more complex than a simple heat dissipation mechanism dominated by acoustic phonons, which opens new possibilities for engineering nanoelectronics with improved thermal management.
Genetic mutations in NF-κB pathway genes were associated with the protection from hepatitis C virus infection among Chinese Han population
Authors: Yue Ming , Tian Ting , Wang Chunhui , Fan Haozhi , Wu Jingjing , Wang Jinke , Li Jun , Xia Xueshan , Zhang Amei , Yu Rongbin , Zhang Yun , Huang Peng 
Published: July 2019

AbstractHost genetic polymorphism is one of major unalterable major factors for HCV infection. NF-κB proteins play multiple roles in immune response and involve in HCV infection and progression. This study was conducted to explore the relationship between single nucleotide polymorphisms (SNPs) in NF-κB pathway and the susceptibility as well as resolution of HCV infection. A total of 1642 Chinese subjects were enrolled in the study, including 963 uninfected control cases, 231 cases with spontaneous viral clearance and 448 cases with persistent HCV infection, and four SNPs (Rel rs842647, NF-κB2 rs12769316, RelA rs7101916, RelB rs28372683) were genotyped by TaqMan assay among them. Potentially functional polymorphisms were analyzed using online bioinformatics tools. The logistic analyses results indicated that RelA rs7101916 T allele (PBonferroni = 0.016) and RelB rs28372683 A allele (PBonferroni = 4.8e-5) were associated with an decreased risk of the susceptibility to HCV infection among Chinese Han population, which were consistent with the results of cumulative effects and haplotype analysis. The silico analysis of SNPs function suggested that the genetic variation of rs7101916 and rs28372683 could influence gene transcriptional regulation and expression, subsequently affecting NF-κB pathway activation and the susceptibility to HCV infection. This study firstly reported that the carriage of RelA rs7101916 T or RelB rs28372683 A was the potential protective factor against HCV infection among the Chinese population.
Mantle fluids associated with crustal-scale faulting in a continental subduction setting, Taiwan
Authors: Chen Ai-Ti , Shen Chuan-Chou , Byrne Timothy B. , Sano Yuji , Takahata Naoto , Yang Tsanyao Frank , Wang Yunshuen 
Published: July 2019

AbstractWe report noble gas signatures of groundwater, hot springs, and bedrock samples from a major fault system that separates regional-scale blocks of accreted, continental materials in southern Taiwan. Despite the continental setting, the isotopic signatures argue for the presence of mantle derived fluids, suggesting that the active fault system is deep-seated. This is consistent with deep, non-volcanic tremors identified in the same area. We speculate that the mantle fluids are escaping along a crustal-scale fault marked by clusters of non-volcanic tremors directly beneath the southern Central Range. The evidence of these tremors and electrical conductivity anomalies along the strike of the fault recognized previously correlated up dip with the surface trace of a major active fault support the hypothesis.
The effect of high pressure on the NMDA receptor: molecular dynamics simulations
Authors: Bliznyuk Alice , Grossman Yoram , Moskovitz Yevgeny 
Published: July 2019

AbstractProfessional divers exposed to ambient pressures above 11 bar develop the high pressure neurological syndrome (HPNS), manifesting as central nervous system (CNS) hyperexcitability, motor disturbances, sensory impairment, and cognitive deficits. The glutamate-type N-methyl-D-aspartate receptor (NMDAR) has been implicated in the CNS hyperexcitability of HPNS. NMDARs containing different subunits exhibited varying degrees of increased/decreased current at high pressure. The mechanisms underlying this phenomenon remain unclear. We performed 100 ns molecular dynamics (MD) simulations of the NMDAR structure embedded in a dioleoylphosphatidylcholine (DOPC) lipid bilayer solvated in water at 1 bar, hydrostatic 25 bar, and in helium at 25 bar. MD simulations showed that in contrast to hydrostatic pressure, high pressure helium causes substantial distortion of the DOPC membrane due to its accumulation between the two monolayers: reduction of the Sn-1 and Sn-2 DOPC chains and helium-dependent dehydration of the NMDAR pore. Further analysis of important regions of the NMDAR protein such as pore surface (M2 α-helix), Mg2+ binding site, and TMD-M4 α-helix revealed significant effects of helium. In contrast with previous models, these and our earlier results suggest that high pressure helium, not hydrostatic pressure per se, alters the receptor tertiary structure via protein-lipid interactions. Helium in divers’ breathing mixtures may partially contribute to HPNS symptoms.
3D β-Ni(OH)2 nanowires/RGO composite prepared by phase transformation method for superior electrochemical performance
Authors: He Wenxiu , Li Xingsheng , An Shengli , Li Tongjun , Zhang Yongqiang , Cui Jinlong 
Published: July 2019

AbstractIn order to improve the capacity and rate performance of nickel-metal hydride (Ni-MH) batteries, we proposed a simple phase transformation method to synthesis 3D β-nickel hydroxide nanowires/reduced graphene oxide (β-Ni(OH)2 NWs/RGO) composite. β-Ni(OH)2 nanowires with diameters of 20–30 nm and lengths up to several micrometers were decorated on RGO layers, forming 3D network structure. The 3D β-Ni(OH)2 NWs/RGO composite displayed a discharge capacity of 343.2 mAh/g at 0.2C, and the capacity values has almost no loss after 100th cycles. When the discharge rate was at 5C, the capacity reached a value of 272.7 mAh/g, and its capacity retention was 79.5%. It showed good capacity and rate performance as a positive material for Ni-MH batteries.
Synergy of therapeutic heterologous prime-boost hepatitis B vaccination with CpG-application to improve immune control of persistent HBV infection
Authors: Kosinska Anna D. , Moeed Abdul , Kallin Nina , Festag Julia , Su Jinpeng , Steiger Katja , Michel Marie-Louise , Protzer Ulrike , Knolle Percy A. 
Published: July 2019

AbstractTherapeutic vaccination against chronic hepatitis B must overcome high viral antigen load and local regulatory mechanisms that promote immune-tolerance in the liver and curtail hepatitis B virus (HBV)-specific CD8 T cell immunity. Here, we report that therapeutic heterologous HBcore-protein-prime/Modified-Vaccinia-Virus-Ankara (MVA-HBcore) boost vaccination followed by CpG-application augmented vaccine-induced HBcAg-specific CD8 T cell-function in the liver. In HBV-transgenic as well as AAV-HBV-transduced mice with persistent high-level HBV-replication, the combination of therapeutic vaccination with subsequent CpG-application was synergistic to generate more potent HBV-specific CD8 T cell immunity that improved control of hepatocytes replicating HBV.
White LED Light Exposure Inhibits the Development and Xanthophore Pigmentation of Zebrafish Embryo
Authors: Üstündağ Ünsal Veli , Çalıskan-Ak E. , Ateş Perihan Seda , Ünal İsmail , Eğilmezer Gizem , Yiğitbaşı Türkan , Ata Alturfan A. , Emekli-Alturfan Ebru 
Published: July 2019

AbstractCircadian rhythm in all living organisms is disturbed continuously by artificial light sources and artificial lighting has become a hazard for public health. Circadian rhythm of melatonin maintains high levels of melatonin during the night and low levels during the day. N-acetyltransferase (arylalkylamine N-acetyltransferase, AANAT) is one of the four enzymes required for melatonin synthesis and mtnr1ba is a melatonin receptor-encoding mRNA that is expressed widely in the embryonic brain. Pax7 has important roles during neural crest development and especially xanthophore pigmentation. Due to its diurnal nature, zebrafish provide a special opportunity for research on circadian rhythms that are regulated by melatonin. Here in this study, we showed that when compared with the white light control group, white LED light exposure resulted in loss of yellow pigmentation, decreased body length and locomotor activity, oxidant-antioxidant imbalance and decreased expressions of aanat2, mtnr1ba, and pax7 in zebrafish embryos. Histological analysis of this group revealed disorganization of the spaces among photoreceptor cells, decreased total retinal thickness and photoreceptor cell layer thickness compared with the control group. Artificial lighting pollution has the potential to become an important risk factor for different diseases including cancer especially for industrialized countries, therefore, more studies should be performed and necessary regulations should be made regarding this risk factor.
Lower levels of α-Klotho in serum are associated with decreased lung function in individuals with interstitial lung abnormalities
Authors: Buendia-Roldan Ivette , Machuca Nancy , Mejía Mayra , Maldonado Mariel , Pardo Annie , Selman Moises 
Published: July 2019

AbstractInterstitial lung abnormalities (ILA) represent aging-associated bilateral interstitial abnormalities in nondependent areas of the lung. However, the aging mechanisms associated with ILA remain uncertain. α-Klotho is an anti-aging molecule that decreases progressively with age, and abnormally low circulating levels of this protein have been revealed in several chronic-degenerative diseases. In this study, we evaluated α-Klotho serum concentrations in individuals with ILA, and examined whether its levels were associated with pulmonary function decline. α-Klotho was measured by ELISA in 50 respiratory asymptomatic adults with ILA and 150 healthy individuals over 60 years. Compared with controls, ILA subjects were predominantly older males, and showed lower lung diffusing capacity (DLCO), higher desaturation after exercise, and higher concentrations of serum matrix metalloprotease-7 (6.24 ± 4.1 versus 4.3 ± 1.7 ng/ml; p = 0.002). No differences were found in serum concentrations of α-Klotho. However, lower levels of this protein in ILA significantly correlated with lower values of forced vital capacity (Rho = 0.39; p = 0.005), forced expiratory volume in one second (Rho = 0.39; p = 0.005), and DLCO (Rho = 0.29, p = 0.04). These findings suggest that decreased concentrations of α-Klotho may be a predictive biomarker of accelerated decline of lung function in individuals with ILA.
Pharmacological Profiling of Purified Human Stem Cell-Derived and Primary Mouse Motor Neurons
Authors: Moakley Daniel , Koh Joan , Pereira Joao D. , DuBreuil Daniel M. , Devlin Anna-Claire , Berezovski Eugene , Zhu Kevin , Wainger Brian J. 
Published: July 2019

AbstractDirected differentiation of human pluripotent stem cells (hPSCs) has enabled the generation of specific neuronal subtypes that approximate the intended primary mammalian cells on both the RNA and protein levels. These cells offer unique opportunities, including insights into mechanistic understanding of the early driving events in neurodegenerative disease, replacement of degenerating cell populations, and compound identification and evaluation in the context of precision medicine. However, whether the derived neurons indeed recapitulate the physiological features of the desired bona fide neuronal subgroups remains an unanswered question and one important for validating stem cell models as accurate functional representations of the primary cell types. Here, we purified both hPSC-derived and primary mouse spinal motor neurons in parallel and used extracellular multi-electrode array (MEA) recording to compare the pharmacological sensitivity of neuronal excitability and network function. We observed similar effects for most receptor and channel agonists and antagonists, supporting the consistency between human PSC-derived and mouse primary spinal motor neuron models from a physiological perspective.
Structural Entropy: Monitoring Correlation-Based Networks Over Time With Application To Financial Markets
Authors: Almog Assaf , Shmueli Erez 
Published: July 2019

AbstractThe concept of “Structural Diversity” of a network refers to the level of dissimilarity between the various agents acting in the system, and it is typically interpreted as the number of connected components in the network. This key property of networks has been studied in multiple settings, including diffusion of ideas in social networks and functional diversity of regions in brain networks. Here, we propose a new measure, “Structural Entropy”, as a revised interpretation to “Structural Diversity”. The proposed measure relies on the finer-grained network communities (in contrast to the network’s connected components), and takes into consideration both the number of communities and their sizes, generating a single representative value. We then propose an approach for monitoring the structure of correlation-based networks over time, which relies on the newly suggested measure. Finally, we illustrate the usefulness of the new approach, by applying it to the particular case of emergent organization of financial markets. This provides us a way to explore their underlying structural changes, revealing a remarkably high linear correlation between the new measure and the volatility of the assets’ prices over time.
A low-cost hyperspectral scanner for natural imaging and the study of animal colour vision above and under water
Authors: Nevala N. E. , Baden T. 
Published: July 2019

AbstractHyperspectral imaging is a widely used technology for industrial and scientific purposes, but the high cost and large size of commercial setups have made them impractical for most basic research. Here, we designed and implemented a fully open source and low-cost hyperspectral scanner based on a commercial spectrometer coupled to custom optical, mechanical and electronic components. We demonstrate our scanner’s utility for natural imaging in both terrestrial and underwater environments. Our design provides sub-nm spectral resolution between 350–950 nm, including the UV part of the light spectrum which has been mostly absent from commercial solutions and previous natural imaging studies. By comparing the full light spectra from natural scenes to the spectral sensitivity of animals, we show how our system can be used to identify subtle variations in chromatic details detectable by different species. In addition, we have created an open access database for hyperspectral datasets collected from natural scenes in the UK and India. Together with comprehensive online build- and use-instructions, our setup provides an inexpensive and customisable solution to gather and share hyperspectral imaging data.
Efficacy of Type 2 PRRSV vaccine against challenge with the Chinese lineage 1 (NADC30-like) PRRSVs in pigs
Authors: Wei Chunhua , Dai Ailing , Fan Jialin , Li Yan , Chen Anni , Zhou Xia , Luo Manlin , Yang Xiaoyan , Liu Jiankui 
Published: July 2019

AbstractThe objective of the present study was to determine the cross-protection of Ingelvac PRRS MLV against challenge with the new lineage 1 PRRSV emerged in China in pigs. Two lineage 1 PRRSV strains (FJZ03 and FJWQ16 originated from recombination event between NADC30 and JXA1-like strain). We found that pigs vaccinated with the vaccine were protected against challenge with the FJZ03 as shown by fewer days of clinical fever, reduced lung pathology scores, lower PRRS virus load in the blood and developed broadly neutralizing antibodies with high titers to FJZ03. In contrast, vaccine provided limited protection against challenge with FJWQ16 with higher fever, lower antibody titers, lower neutralizing antibodies and higher viral loads in blood. These results demonstrate PRRSV-MLV provides incomplete protection against new lineage 1 PRRSVs.