bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ecological modeling of Cistanche deserticola Y.C. Ma in Alxa, China
Authors: Li Ziyan , Zhang Chunhong , Ren Guanyao , Yang Min , Zhu Shoudong , Li Minhui 
Published: September 2019

AbstractCistanche deserticola Y.C. Ma has long been used for medical purposes in China. It mainly grows in the Chinese provinces of Inner Mongolia, Ningxia, Gansu, and Xinjiang, and the species in the Alxa region of northwest China, have the most distinct qualities. To explain the geoherbalism quality and geographical distribution of C. deserticola, we sampled 65 wild plants in Alxa, determined their echinacoside and acteoside content, and assessed the relationship between the ecological environment and quality of C. deserticola through maximum entropy modeling and geographic information system. We identified the areas suitable for the growth of high-quality C. deserticola species. The regionalization analysis of growth suitability showed that the most influential ecological factors for the growth of C. deserticola are soil type, annual sunshine duration, altitude, temperature seasonality (standard deviation ×100), vegetation type, sunshine duration in the growing season, mean precipitation in August and mean temperature in July. The most suitable areas for growing C. deserticola are southeast of Ejin Banner, central Alxa Right Banner, and north of Alxa Left Banner. The regionalization analysis of quality suitability showeds that the most influential ecological factors for glycosides in C. deserticola are sunshine duration in June, average precipitation in May, and average temperature in March, and the best-quality C. deserticola grows in Dalaihob Town, Ejin Banner. Upon inspection, the result of the experiment reached a high accuracy of 0.994, which indicates that these results are consistent with the actual distribution of C. deserticola in Alxa. The results of this study may serve as a scientific basis for site selection of artificial planting bases for C. deserticola.
Fluidized landslides triggered by the liquefaction of subsurface volcanic deposits during the 2018 Iburi–Tobu earthquake, Hokkaido
Authors: Kameda Jun , Kamiya Hiro , Masumoto Hirokazu , Morisaki Tomonori , Hiratsuka Toru , Inaoi Chisaki 
Published: September 2019

AbstractThe 6.6 Mw Iburi–Tobu earthquake struck southern Hokkaido, Japan on 6 September 2018. The earthquake triggered widespread slope collapses in the hills near the epicenter, resulting in destructive landslides that killed 36 people. Volcanic deposits covering the region slid downhill in a flow-like manner suggestive of fluidized landslides. Here, we report a distinctive example of liquefaction in the field, which could be a prerequisite for the generation of fluidized landslides triggered by large earthquakes. In the scarp of a typical landslide, an altered halloysite-bearing volcanic layer is observed at a level almost coincident with the sliding surface. The layer is intensely undulating and can be divided into an upper clay-rich layer and a lower pumice-rich layer, suggesting that the altered layer had liquefied as a result of the strong coseismic ground motion. The layer had been soaked by heavy rainfall just one day before the earthquake and could have liquefied, producing a weak and slippery plane, resulting in the catastrophic landslides in this area.
Putative link between Polo-like kinases (PLKs) and Toll-like receptor (TLR) signaling in transformed and primary human immune cells
Authors: El Maadidi Souhayla , Weber Alexander N. R. , Motshwene Precious , Schüssler Jan Moritz , Backes Daniel , Dickhöfer Sabine , Wang Hui , Liu Xiao , Garcia Magno Delmiro , Taumer Christoph , Soufi Boumediene , Wolz Olaf-Oliver , Klimosch Sascha N. , Franz-Wachtel Mirita , Macek Boris , Gay Nicholas J. 
Published: September 2019

AbstractToll-like receptors (TLRs) are important sentinels of bacterial and viral infection and thus fulfil a critical sensory role in innate immunity. Polo-like kinases (PLKs), a five membered family of Ser/Thr protein kinases, have long been studied for their role in mitosis and thus represent attractive therapeutic targets in cancer therapy. Recently, PLKs were implicated in TLR signaling in mice but the role of PLKs in TLR signaling in untransformed primary immune cells has not been addressed, even though PLK inhibitors are in clinical trials. We here identified several phospho-serine and phospho-threonine residues in the known TLR pathway kinases, Interleukin-1 receptor-associated kinase (IRAK) 2 and IRAK4. These sites lie in canonical polo-box motifs (PBM), sequence motifs known to direct recruitment of PLKs to client proteins. Interestingly, PLK1 was phosphorylated and PLK 2 and 3 mRNA induced upon TLR stimulation in primary immune cells, respectively. In whole blood, PLK inhibition disparately affected TLR mediated cytokine responses in a donor- and inhibitor-dependent fashion. Collectively, PLKs may thus potentially interface with TLR signaling in humans. We propose that temporary PLK inhibitor-mediated blockade of TLR-signaling in certain patients receiving such inhibitors during cancer treatment may cause adverse effects such as an increased risk of infections due to a then compromised ability of the TLR recognition system to sense and initiate cytokine responses to invading microbes.
Alternative classifications of neurons based on physiological properties and synaptic responses, a computational study
Authors: Hernáth Ferenc , Schlett Katalin , Szücs Attila 
Published: September 2019

AbstractOne of the central goals of today’s neuroscience is to achieve the conceivably most accurate classification of neuron types in the mammalian brain. As part of this research effort, electrophysiologists commonly utilize current clamp techniques to gain a detailed characterization of the neurons’ physiological properties. While this approach has been useful, it is not well understood whether neurons that share physiological properties of a particular phenotype would also operate consistently under the action of natural synaptic inputs. We approached this problem by simulating a biophysically diverse population of model neurons based on 3 generic phenotypes. We exposed the model neurons to two types of stimulation to investigate their voltage responses under conventional current step protocols and under simulated synaptic bombardment. We extracted standard physiological parameters from the voltage responses elicited by current step stimulation and spike arrival times descriptive of the model’s firing behavior under synaptic inputs. The biophysical phenotypes could be reliably identified using classification based on the ‘static’ physiological properties, but not the interspike interval-based parameters. However, the model neurons associated with the biophysically different phenotypes retained cell type specific features in the fine structure of their spike responses that allowed their accurate classification.
Characterization of SMG7 14-3-3-like domain reveals phosphoserine binding-independent regulation of p53 and UPF1
Authors: Cowen Lauren E. , Luo Hongwei , Tang Yi 
Published: September 2019

AbstractThe 14-3-3-related protein SMG7 plays critical roles in regulation of DNA damage response and nonsense-mediated mRNA decay (NMD). Like 14-3-3, SMG7 engages phosphoserine-dependent protein interactions; however, the precise role of phosphorylation-mediated SMG7 binding remains unknown. Here, we show that DNA damage-induced SMG7-p53 binding requires phosphorylated Ser15 on p53, and that substitution of the conserved lysine residue K66 in the SMG7 14-3-3-like domain with the glutamic acid (E) abolishes interactions with its client proteins p53 and UPF1. Unexpectedly, loss of phosphoserine-dependent SMG7 binding does not significantly affect p53 stabilization/activation, and p53-dependent cell growth arrest or apoptosis upon DNA damage. Also surprisingly, cells expressing the SMG7 K66E-knockin mutant retain fully functional UPF1-mediated NMD. These findings are highly unusual, given that phosphorylation-mediated 14-3-3 binding has essential roles in numerous cellular signaling pathways. Thus, our studies suggest that 14-3-3-like proteins such as SMG7 likely function using additional distinct regulatory mechanisms besides phosphoserine-mediated protein interactions.
Reduction of bias in the evaluation of fractional anisotropy and mean diffusivity in magnetic resonance diffusion tensor imaging using region-of-interest methodology
Authors: Seo Youngseob , Rollins Nancy K. , Wang Zhiyue J. 
Published: September 2019

AbstractAccurate quantification of fractional anisotropy (FA) and mean diffusivity (MD) in MR diffusion tensor imaging (DTI) requires adequate signal-to-noise ratio (SNR) especially in low FA areas of the brain, which necessitates clinically impractical long image acquisition times. We explored a SNR enhancement strategy using region-of-interest (ROI)-based diffusion tensor for quantification. DTI scans from a healthy male were acquired 15 times and combined into sets with different number of signal averages (NSA = 1–4, 15) at one 1.5-T Philips and three 3-T (Philips, Siemens and GE) scanners. Equivalence test was performed to determine NSA thresholds for bias-free FA and MD quantifications by comparison with reference values derived from images with NSA = 15. We examined brain areas with low FA values including caudate nucleus, globus pallidus, putamen, superior temporal gyrus, and substructures within thalamus (lateral dorsal, ventral anterior and posterior nuclei), where bias-free FA is difficult to obtain using a conventional approach. Our results showed that bias-free FA can be obtained with NSA = 2 or 3 in some cases using ROI-based analysis. ROI-based analysis allows reliable FA and MD quantifications in various brain structures previously difficult to study with clinically feasible data acquisition schemes.
Better grip force control by attending to the controlled object: Evidence for direct force estimation from visual motion
Authors: Takamuku Shinya , Gomi Hiroaki 
Published: September 2019

AbstractEstimating forces acting between our hand and objects is essential for dexterous motor control. An earlier study suggested that vision contributes to the estimation by demonstrating changes in grip force pattern caused by delayed visual feedback. However, two possible vision-based force estimation processes, one based on hand position and another based on object motion, were both able to explain the effect. Here, to test each process, we examined how visual feedback of hand and object each contribute to grip force control during moving an object (mass) connected to the grip by a damped-spring. Although force applied to the hand could be estimated from its displacement, we did not find any improvements by the hand feedback. In contrast, we found that visual feedback of object motion significantly improved the synchrony between grip and load forces. Furthermore, when both feedback sources were provided, the improvement was observed only when participants were instructed to direct their attention to the object. Our results suggest that visual feedback of object motion contributes to estimation of dynamic forces involved in our actions by means of inverse dynamics computation, i.e., the estimation of force from motion, and that visual attention directed towards the object facilitates this effect.
High Impact Exercise Improves Bone Microstructure and Strength in Growing Rats
Authors: Mustafy Tanvir , Londono Irène , Moldovan Florina , Villemure Isabelle 
Published: September 2019

AbstractPhysical activity is beneficial for skeletal development. However, impact sports during adolescence, leading to bone growth retardation and/or bone quality improvement, remains unexplained. This study investigated the effects of in vivo low (LI), medium (MI), and high (HI) impact loadings applied during puberty on bone growth, morphometry and biomechanics using a rat model. 4-week old rats (n = 30) were divided into control, sham, LI, MI, and HI groups. The impact was applied on the right tibiae, 5 days/week for 8 weeks mimicking walking (450 µε), uphill running (850 µε) and jumping (1250 µε) conditions. Trabecular and cortical parameters were determined by micro-CT, bone growth rate by calcein labeling and toluidine blue staining followed by histomorphometry. Bio-mechanical properties were evaluated from bending tests. HI group reduced rat body weight and food consumption compared to shams. Bone growth rate also decreased in MI and HI groups despite developing thicker hypertrophic and proliferative zone heights. HI group showed significant increment in bone mineral density, trabecular thickness, cortical and total surface area. Ultimate load and stiffness were also increased in MI and HI groups. We conclude that impact loading during adolescence reduces bone growth moderately but improves bone quality and biomechanics at the end of the growing period.
Profiles of volatile indole emitted by Escherichia coli based on CDI-MS
Authors: Zhong Qiaoshi , Cheng Feng , Liang Juchao , Wang Xiaozhong , Chen Yanhui , Fang Xueyao , Hu Longhua , Hang Yaping 
Published: September 2019

AbstractEscherichia coli is an important pathogen of nosocomial infection in clinical research, Thus, exploring new methods for the rapid detection of this pathogen is urgent. We reported the early release of molecular volatile indole vapour of E. coli cultures and blood cultures analyzed by direct atmospheric corona discharge ionization mass spectrometry (CDI-MS). The concentration of indole in E. coli cultures remarkably increases during the early log and lag phases of bacterial growth, thereby enabling early detection. Technical replicates were cultivated for 3 days for reference diagnosis using current conventional bacteraemia detection. A reference MS screen of common microbes from other genera confirmed that the peaks at m/z 116 signal corresponded to indole were specifically present in E. coli. Our results indicated that volatile indole based on CDI-MS without the need for any sample pretreatment is highly suitable for the reliable and cost-efficient differentiation of E. coli, especially for bacteraemia in humans.
Dissociation between cortical and spinal excitability of the antagonist muscle during combined motor imagery and action observation
Authors: Aoyama Toshiyuki , Kaneko Fuminari , Ohashi Yukari , Kohno Yutaka 
Published: September 2019

AbstractInhibitory neural control of antagonist muscle is one of the fundamental neural mechanism of coordinated human limb movement. Previous studies have revealed that motor execution (ME) and motor imagery (MI) share many common neural substrates; however, whether inhibitory neural activity occurs during MI remains unknown. In addition, recent studies have demonstrated that a combined MI and action observation (MI + AO) produces strong neurophysiological changes compared with MI or AO alone. Therefore, we investigated inhibitory changes in cortical and spinal excitability of the antagonist muscle during MI + AO and ME. Single-pulse transcranial magnetic stimulation (TMS) experiments revealed that corticospinal excitability of the antagonist muscle was decreased during MI + AO. Conversely, F-wave experiments showed that F-wave persistence of the antagonist muscle increased. Paired-pulse TMS experiment also demonstrated that short-interval intracortical inhibition (SICI) did not contribute to this inhibition. Therefore, cortical mediated inhibition, except for SICI, may be related to this inhibition. Conversely, such clear inhibition of the antagonist muscle was not observed during ME, presumably owing to the effects of muscle contraction to decelerate the movements and/or sensory input accompanying the joint movements. These findings provide important insights into the neurophysiological differences between MI + AO and ME.
Novel Human Anti-PD-L1 mAbs Inhibit Immune-Independent Tumor Cell Growth and PD-L1 Associated Intracellular Signalling
Authors: Passariello Margherita , D’Alise Anna Morena , Esposito Annachiara , Vetrei Cinzia , Froechlich Guendalina , Scarselli Elisa , Nicosia Alfredo , De Lorenzo Claudia 
Published: September 2019

AbstractThe novel antibody-based immunotherapy in oncology exploits the activation of immune system mediated by immunomodulatory antibodies specific for immune checkpoints. Among them, the programmed death ligand-1 (PD-L1) is of particular interest as it is expressed not only on T-cells, but also on other immune cells and on a large variety of cancer cells, such as breast cancer cells, considering its high expression in both ErbB2-positive and Triple Negative Breast Cancers. We demonstrate here that PD-L1_1, a novel anti-PD-L1 T -cell stimulating antibody, inhibits PD-L1-tumor cell growth also by affecting the intracellular MAPK pathway and by activating caspase 3. Similar in vitro results were obtained for the first time here also with the clinically validated anti-PD-L1 mAb Atezolizumab and in vivo with another validated anti-mouse anti-PD-L1 mAb. Moreover, we found that two high affinity variants of PD-L1_1 inhibited tumor cell viability more efficiently than the parental PD-L1_1 by affecting the same MAPK pathways with a more potent effect. Altogether, these results shed light on the role of PD-L1 in cancer cells and suggest that PD-L1_1 and its high affinity variants could become powerful antitumor weapons to be used alone or in combination with other drugs such as the anti-ErbB2 cAb already successfully tested in in vitro combinatorial treatments.
Comparative metabolomics of MCF-7 breast cancer cells using different extraction solvents assessed by mass spectroscopy
Authors: Semreen Mohammad H. , Alniss Hasan Y. , Grgic Stefan R. , El-Awady Raafat A. , Almehdi Ahmed H. , Mousa Muath K. , Hamoudi Rifat A. 
Published: September 2019

AbstractMetabolic profiling of cancer cells can play a vital role in revealing the molecular bases of cancer development and progression. In this study, gas chromatography coupled with mass spectrometry (GC-MS) was employed for the determination of signatures found in ER+/PR+ breast cancer cells derived from MCF-7 using different extraction solvents including: A, formic acid in water; B, ammonium hydroxide in water; C, ethyl acetate; D, methanol: water (1:1, v/v); and E, acetonitrile: water (1:1, v/v). The greatest extraction rate and diversity of metabolites occurs with extraction solvents A and E. Extraction solvent D showed moderate extraction efficiency, whereas extraction solvent B and C showed inferior metabolite diversity. Metabolite set enrichment analysis (MSEA) results showed energy production pathways to be key in MCF-7 cell lines. This study showed that mass spectrometry could identify key metabolites associated with cancers. The highest enriched pathways were related to energy production as well as Warburg effect pathways, which may shed light on how energy metabolism has been hijacked to encourage tumour progression and eventually metastasis in breast cancer.
Association between Galectin-3 levels within central and peripheral venous blood, and adverse left ventricular remodelling after first acute myocardial infarction
Authors: Andrejic Olivera M. , Vucic Rada M. , Pavlovic Milan , McClements Lana , Stokanovic Dragana , Jevtovic–Stoimenov Tatjana , Nikolic Valentina N. 
Published: September 2019

AbstractOur study investigates association between Galectin-3 levels and adverse left ventricular remodelling (LVR) at six months. Fifty-seven patients following first acute myocardial infarction (AMI) were enrolled in this study and blood samples collected on day 1 from the femoral vein and artery, the right atrium near the coronary sinus and the aortic root, and on day 30, from the cubital vein. Patients with LVESV ≥20% at six months, were included in the LVR group. On day 1, Galectin-3 plasma levels in the femoral vein (10.34 ng/ml ± 3.81 vs 8.22 ng/ml ± 2.34, p = 0.01), and near coronary sinus (10.7 ng/ml ± 3.97 vs 8.41 ng/ml ± 2.56, p = 0.007) were higher in the LVR group. Positive correlations between Galectin-3 levels from aortic root and coronary sinus, aortic root and femoral vein, and coronary sinus and femoral vein, were observed in both groups. On day 30, Galectin-3 concentration in the cubital vein was an independent risk factor of LVR six months post-AMI, demonstrating 1.5-fold increased risk. Day-30 Galectin-3 also showed positive correlations with echocardiography parameters indicative of diastolic and systolic dysfunction. Determining Galectin-3 plasma concentration on day 30 following AMI could have beneficial prognostic value in predicting LVR.
Three-dimensional cellular automaton simulation of coupled hydrogen porosity and microstructure during solidification of ternary aluminum alloys
Authors: Gu Cheng , Lu Yan , Ridgeway Colin D. , Cinkilic Emre , Luo Alan A. 
Published: September 2019

AbstractHydrogen-induced porosity formed during solidification of aluminum-based alloys has been a major issue adversely affecting the performance of solidification products such as castings, welds or additively manufactured components. A three-dimensional cellular automaton model was developed, for the first time, to predict the formation and evolution of hydrogen porosity coupled with grain growth during solidification of a ternary Al-7wt.%Si-0.3wt.%Mg alloy. The simulation results fully describe the concurrent nucleation and evolution of both alloy grains and hydrogen porosity, yielding the morphology of multiple grains as well as the porosity size and distribution. This model, successfully validated by X-ray micro-tomographic measurements and optical microscopy of a wedge die casting, provides a critical tool for minimizing/controlling porosity formation in solidification products.
Proteomic Investigations of Autism Brain Identify Known and Novel Pathogenetic Processes
Authors: Abraham Joseph R. , Szoko Nicholas , Barnard John , Rubin Robert A. , Schlatzer Daniela , Lundberg Kathleen , Li Xiaolin , Natowicz Marvin R. 
Published: September 2019

AbstractAutism Spectrum Disorder (ASD) is a set of heterogeneous neurodevelopmental conditions defined by impairments in social communication and restricted, repetitive behaviors, interests or activities. Only a minority of ASD cases are determined to have a definitive etiology and the pathogenesis of most ASD is poorly understood. We hypothesized that a global analysis of the proteomes of human ASD vs. control brain, heretofore not done, would provide important data with which to better understand the underlying neurobiology of autism. In this study, we characterized the proteomes of two brain regions, Brodmann area 19 (BA19) and posterior inferior cerebellum (CB), from carefully selected idiopathic ASD cases and matched controls using label-free HPLC-tandem mass spectrometry. The data revealed marked differences between ASD and control brain proteomes for both brain regions. Unlike earlier transcriptomic analyses using frontal and temporal cortex, however, our proteomic analysis did not support ASD attenuating regional gene expression differences. Bioinformatic analyses of the differentially expressed proteins between cases and controls highlighted canonical pathways involving glutamate receptor signaling and glutathione-mediated detoxification in both BA19 and CB; other pathways such as Sertoli cell signaling and fatty acid oxidation were specifically enriched in BA19 or CB, respectively. Network analysis of both regions of ASD brain showed up-regulation of multiple pre- and post-synaptic membrane or scaffolding proteins including glutamatergic ion channels and related proteins, up-regulation of proteins involved in intracellular calcium signaling, and down-regulation of neurofilament proteins, with DLG4 and MAPT as major hub proteins in BA19 and CB protein interaction networks, respectively. Upstream regulator analysis suggests neurodegeneration-associated proteins drive the differential protein expression for ASD in both BA19 and CB. Overall, the proteomic data provide support for shared dysregulated pathways and upstream regulators for two brain regions in human ASD brain, suggesting a common ASD pathophysiology that has distinctive regional expression.