bluuebunny/crossref_metadata_2025_split huggingface dataset:
Resurge deposits associated with the shallow marine early Cambrian Vakkejokk impact, north Sweden
Authors: Ormö J. , Minde P. , Nielsen A. T. , Alwmark C. 
Published: March 2019

AbstractThe lower Cambrian Vakkejokk Breccia is a proximal ejecta layer from a shallow marine impact. It is exposed for ~7 km along a steep mountainside in Lapland, northernmost Sweden. In its central parts, the layer is up to ~27 m thick. Here the breccia shows a vertical differentiation into (1) a lower subunit consisting of strongly deformed target sediments mixed with up to decameter size, mainly crystalline basement clasts (i.e., lower polymict breccia [LPB]); (2) a middle subunit consisting of a polymict, blocky to gravelly breccia, commonly graded (i.e., graded polymict breccia [GPB]), that, in turn, is sporadically overlain by (3) a few dm thick, sandy bed (i.e., top sandstone [TS]). Previous work interpreted the graded beds as deposited by resurging water during early crater modification. We made three short (<1.35 m) core drillings through the graded beds. The line‐logging technique previously used on cores from other marine‐target craters was complemented by logging of equal‐sized cells in photos made along the cores. Granulometry and clast lithology determinations provide further evidence for the top beds of the breccia being resurge deposits. However, the magnitude of this resurge can only be assessed by future deep core drilling of the infill of the crater hidden below the mountain.
The mystery of our mathematical universe
Authors: Paulson Steve , Gates S. James , Wertheim Margaret 
Published: March 2019

AbstractWhy is it that fundamental laws discovered through pure mathematics have been able to describe the behavior of our physical world with such precision? Given that the physical universe is composed of mathematical properties, some have posited that mathematics is the language of the universe, whose laws reveal what appears to be a hidden order in the natural world. Physicist S. James Gates, Jr. and science writer Margaret Wertheim explore the uncanny ability of mathematics to reveal the laws of nature.
Reinventing heterosis phenomenon through deployment of alien introgression lines in rice (Oryza sativa L.)
Authors: Gaikwad Kiran B. , Singh Naveen , Bhatia Dharminder , Kaur Rupinder , Bains Navtej S. , Bharaj Tajinder S. , Singh Kuldeep 
Published: March 2019

AbstractIntrogression Lines (ILs) carrying alien genomic segments in the homozygous state may or may not be able to contribute positively to the phenotype on account of replacement of cultivated genome segment, however, the genetic elite in heterozygous condition can be attributed to the presence of both recipient and donor genome complements. Therefore, overdominance or pseudo‐overdominance effect at the heterozygous loci is anticipated. Set of 318 ILs, carrying several genomic segments from “A” genome donor wild species, were used for developing test hybrids with CMS line PMS17A. Of these, three hybrids observed significant yield advantage (>25%) over recurrent parents and checks. Parental ILs of these hybrids viz., IL326, IL901 and IL951 carried 5.62%, 2.52% introgression from Oryza rufipogon and 6.71% from Oryza nivara, respectively. These ILs were also crossed with their recurrent parent to develop introgression line hybrids (ILHs) to observe the contribution of the alien segment(s), in the homozygous and heterozygous state. The traits studied have higher mean value when genomic segments from wild species were in the heterozygous state as compared to the homozygous state.
Congenital hemangioma exhibiting postnatal growth
Authors: Knöpfel Nicole , Wälchli Regula , Luchsinger Isabelle , Theiler Martin , Weibel Lisa , Schwieger‐Briel Agnes 
Published: March 2019

AbstractCongenital hemangiomas are vascular tumors that are fully formed at birth, typically without postnatal growth. Noninvoluting congenital hemangiomas (NICH) have a distinctive clinical, radiologic, and histopathological profile and lack of expansion or involution over time. Herein, we describe two cases of NICH with atypical postnatal growth.
Morphology‐controlled Fabrication of SnO2/ZnO Nanocomposites with Enhanced Photocatalytic Performance
Authors: Yu Yan , Yao Binghua , Cao Baoyue , Ma Wei 
Published: March 2019

AbstractIn this work, a series of novel SnO2/ZnO nanocomposites with different morphologies were fabricated via a facile hydrothermal technique followed by calcination in air. The morphological, structural and photocatalytic properties of the SnO2/ZnO nanocomposites were studied using different methods. The results showed that the synthesized nanocomposites possessed crystal phases of wurtzite hexagonal phase ZnO and tetragonal rutile phase SnO2. In addition, the morphologies of SnO2/ZnO nanocomposites strongly depended on the molar ratios of Sn and Zn. Compared with ZnO and SnO2, the SnO2/ZnO nanocomposites exhibited considerably higher degradation efficiency for the photodegradation of methylene blue and quinolone antibiotics under mercury lamp irradiation. The SZ‐2 nanospheres exhibited the highest degradation efficiency of 95.81%, which was about 2.63 times higher than that of ZnO nanoparticles. Moreover, the trapping experiments confirmed that ˙OH played the dominant role in MB degradation. Finally, the charge carriers potential transfer pathway and photocatalytic degradation mechanism were put forward. This study provides an economical way to prepare hybrid nanocomposites with controlled morphology for practical applications in the photocatalytic degradation of organic dyes and residual antibiotics.
Tiger Moms or Cat Dads: Parental Role in Bilingualism Among Asian and Latino Americans
Authors: Chen Jihui , Kang Hyun‐Sook 
Published: March 2019

ObjectiveThis study examines the differing roles of parents in producing bilingualism among second‐generation Asian and Latino Americans, the fastest growing immigrant groups in the United States.MethodsWe employ the probit model to estimate the likelihood of language maintenance for both ethnic groups using the Integrated Public Use Microdata Series (IPUMS) USA of 2005–2014.ResultsThe estimation results show that mothers play a more significant role than fathers, especially for Latino Americans, and that heritage‐language retention increases with the parents’ age at arrival. We also find an increase in the rates of language maintenance across generations, presumably resulting from heightened awareness of the need to preserve cultural heritage among younger immigrants in recent decades.ConclusionThese findings highlight the cultural and structural differences in gendered parenting between the two immigrant groups and suggest potential areas of gains through intervention programs for immigrant parents to promote parental investment in their children's development, including bilingualism.
Efficient induction of heritable inversions in plant genomes using the CRISPR/Cas system
Authors: Schmidt Carla , Pacher Michael , Puchta Holger 
Published: March 2019

SummaryDuring the evolution of plant genomes, sequence inversions occurred repeatedly making the respective regions inaccessible for meiotic recombination and thus for breeding. Therefore, it is important to develop technologies that allow the induction of inversions within chromosomes in a directed and efficient manner. Using the Cas9 nuclease from Staphylococcus aureus (SaCas9), we were able to obtain scarless heritable inversions with high efficiency in the model plant Arabidopsis thaliana. Via deep sequencing, we defined the patterns of junction formation in wild‐type and in the non‐homologous end‐joining (NHEJ) mutant ku70‐1. Surprisingly, in plants deficient of KU70, inversion induction is enhanced, indicating that KU70 is required for tethering the local broken ends together during repair. However, in contrast to wild‐type, most junctions are formed by microhomology‐mediated NHEJ and thus are imperfect with mainly deletions, making this approach unsuitable for practical applications. Using egg‐cell‐specific expression of Cas9, we were able to induce heritable inversions at different genomic loci and at intervals between 3 and 18 kb, in the percentage range, in the T1 generation. By screening individual lines, inversion frequencies of up to the 10% range were found in T2. Most of these inversions had scarless junctions and were without any sequence change within the inverted region, making the technology attractive for use in crop plants. Applying our approach, it should be possible to reverse natural inversions and induce artificial ones to break or fix linkages between traits at will.
The onset of embryo maturation in Arabidopsis is determined by its developmental stage and does not depend on endosperm cellularization
Authors: O'Neill John P. , Colon Kristen T. , Jenik Pablo D. 
Published: March 2019

SummarySeeds are dormant and desiccated structures, filled with storage products to be used after germination. These properties are determined by the maturation program, which starts, in Arabidopsis thaliana, mid‐embryogenesis, at about the same time and developmental stage in all the seeds in a fruit. The two factors, chronological and developmental time, are closely entangled during seed development, so their relative contribution to the transition to maturation is not well understood. It is also unclear whether that transition is determined autonomously by each seed or whether it depends on signals from the fruit. The onset of maturation follows the cellularization of the endosperm, and it has been proposed that there exists a causal relationship between both processes. We explored all these issues by analyzing markers for maturation in Arabidopsis mutant seeds that develop at a slower pace, or where endosperm cellularization happens too early, too late, or not at all. Our data show that the developmental stage of the embryo is the key determinant of the initiation of maturation, and that each seed makes that transition autonomously. We also found that, in contrast with previous models, endosperm cellularization is not required for the onset of maturation, suggesting that this transition is independent of the hexose/sucrose ratio in the seed. Our observations indicate that the mechanisms that control endosperm cellularization, embryo growth, and embryo maturation act independently of each other.
Phylogeography of West Indies Coral snakes (Micrurus): Island colonisation and banding patterns
Authors: Jowers Michael J. , Garcia Mudarra Juan Luis , Charles Stevland P. , Murphy John C. 
Published: March 2019

AbstractIn this study, we analyse New World coral snakes in a phylogenetic framework based upon an increased molecular data set, including novel sequences for the only two sympatric species known from an island (Trinidad, West Indies). Their presence in Trinidad and absence in Tobago offers a unique system to study the phylogeography of the region. We assess the tempo and mode of colonisation of Micrurus on the island, in addition to discussing the phylogenetic relationships for the genus Micrurus concerning two phenotypic traits, body and tail banding patterns. These relationships are analysed for the first time on statistical coalescent phylogeographic discrete ancestral reconstruction. We find a robust phylogenetic component in these characteristics, where strongly supported clades are recovered: prior to the onset of the Early Miocene, a triadal and tricolour tail clade composed of species from South America, and a second clade dating to the Middle‐Late‐ Miocene with monadal and bicolour tails widely distributed from North to South America. The divergence between clades dates to the Oligocene and suggests an ancient pre‐isthmus divergence supporting the arrival of the triadal clade into South America, before the connection between Central and South America was established. We find the two coral snakes present in the West Indies, M. diutius and M. circinalis, belong to the triadal and monadal clades, respectively. Guyana and Trinidad Micrurus diutius share the same haplotypes suggesting a Late Pleistocene–Holocene vicariance when sea level rises separated Trinidad from the mainland. A second lineage of diutius‐like snakes is present in Guyana and is confirmed as M. lemniscatus which is assigned as a voucher and restricts the type locality for M. lemniscatus.
Correlation between aqueous flare and residual visual field area in retinitis pigmentosa
Authors: Nishiguchi Koji M , Yokoyama Yu , Kunikata Hiroshi , Abe Toshiaki , Nakazawa Toru 
Published: March 2019

Background/aimsTo investigate the relationship between aqueous flare, visual function and macular structures in retinitis pigmentosa (RP).MethodsClinical data from 123 patients with RP (227 eyes), 35 patients with macular dystrophy (68 eyes) and 148 controls (148 eyes) were analysed. The differences in aqueous flare between clinical entities and the correlation between aqueous flare (measured with a laser flare cell meter) versus visual acuity, visual field area (Goldmann perimetry) and macular thickness (optical coherence tomography) in patients with RP were determined. Influence of selected clinical data on flare was assessed using linear mixed-effects model.ResultsAqueous flare was higher in patients with RP than patients with macular dystrophy or controls (p=7.49×E−13). Aqueous flare was correlated with visual field area (R=−0.379, p=3.72×E−9), but not with visual acuity (R=0.083, p=0.215). Macular thickness (R=0.234, p=3.74×E−4), but not foveal thickness (R=0.122, p=0.067), was positively correlated with flare. Flare was not affected by the presence of macular complications. All these associations were maintained when the right and the left eyes were assessed separately. Analysis by linear mixed-effects model revealed that age (p=8.58×E-5), visual field area (p=8.01×E-7) and average macular thickness (p=0.037) were correlated with flare.ConclusionAqueous flare and visual field area were correlated in patients with RP. Aqueous flare may reflect the degree of overall retinal degeneration more closely than the local foveal impairment.
Immunotherapy-related hepatitis: real-world experience from a tertiary centre
Authors: Cheung Vincent , Gupta Tarun , Payne Miranda , Middleton Mark R , Collier Jane D , Simmons Alison , Klenerman Paul , Brain Oliver , Cobbold Jeremy F 
Published: March 2019

ObjectiveImmune checkpoint inhibitors like anti-programmed cell death protein 1 (PD-1) drugs Nivolumab and Pembrolizumab and anti-cytotoxic T-lymphocyte associated (CTLA-4) drug Ipilimumab have become standard of care in many metastatic cancers. Immunotherapy-related hepatitis and cholangitis present a diagnostic and management challenge, being rare and incompletely characterised. We aim to report the incidence, features and treatments used for this in a real-world setting and to identify useful biomarkers, which can be used to predict effective use of steroids.DesignRetrospective review of 453 patients started on immunotherapy over 7 years.SettingTertiary hepatology and oncology centre.Patients21 patients identified with immunotherapy-related hepatotoxicity.ResultsHepatitis was most common in those receiving dual therapy (incidence 20%), with 75% of Grade 4 hepatitis cases occurring with ipilimumab-containing regimens. Corticosteroid monotherapy is first line treatment, but doses above 60 mg OD prednisolone do not demonstrate any additional benefit in time to hepatitis resolution. The alanine transaminase (ALT) reduction in steroid-responsive hepatitis is typically rapid (with a halving of ALT within 11 days). The commencement of additional immunosuppression (typically mycophenolate) appears safe and prompts a more rapid fall in ALT than corticosteroid use alone. Infliximab was safely used twice as hepatitis treatment. We also describe one patient with rare immunotherapy-induced biliary disease.ConclusionsVigilance is required for detection of immunotherapy-associated liver disease as, other than dual immunotherapy, we can identify no predictive factors for its development. Our data suggest that corticosteroid response is not dependent on the higher dosing regimens. Early escalation of immunosuppression may be of benefit in the absence of a rapid response to corticosteroids.
Disruption of tumour-associated macrophage trafficking by the osteopontin-induced colony-stimulating factor-1 signalling sensitises hepatocellular carcinoma to anti-PD-L1 blockade
Authors: Zhu Ying , Yang Jing , Xu Da , Gao Xiao-Mei , Zhang Ze , Hsu Jennifer L , Li Chia-Wei , Lim Seung-Oe , Sheng Yuan-Yuan , Zhang Yu , Li Jian-Hua , Luo Qin , Zheng Yan , Zhao Yue , Lu Lu , Jia Hu-Liang , Hung Mien-Chie , Dong Qiong-Zhu , Qin Lun-Xiu 
Published: March 2019

ObjectiveIn the tumour microenvironment, critical drivers of immune escape include the oncogenic activity of the tumour cell-intrinsic osteopontin (OPN), the expression of programmed death ligand 1 (PD-L1) and the expansion of tumour-associated macrophages (TAMs). We investigated the feasibility of targeting these pathways as a therapeutic option in hepatocellular carcinoma (HCC) mouse models.DesignWe analysed the number of tumour-infiltrating immune cells and the inflammatory immune profiles in chemically induced liver tumour isolated from wild-type andOPNknockout (KO) mice. In vitro cell cocultures were further conducted to investigate the crosstalk between TAMs and HCC cells mediated by OPN, colony stimulating factor-1 (CSF1) and CSF1 receptor (CSF1R). The in vivo efficacy of anti-PD-L1 and CSF1/CSF1R inhibition was evaluated in OPN overexpressing subcutaneous or orthotopic mouse model of HCC.ResultsThe numbers of TAMs, as well as the expression levels of M2 macrophage markers and PD-L1 were significantly decreased, but the levels of cytokines produced by T-helper 1 (Th1) cells were upregulated in tumour tissues from OPN KO mice compared with that from the controls. In addition, we observed a positive association between the OPN and PD-L1 expression, and OPN expression and TAM infiltration in tumour tissues from patients with HCC. We further demonstrated that OPN facilitates chemotactic migration, and alternative activation of macrophages, and promotes the PD-L1 expression in HCC via activation of the CSF1-CSF1R pathway in macrophages. Combining anti-PD-L1 and CSF1R inhibition elicited potent antitumour activity and prolonged survival of OPNhightumour-bearing mice. Histological, flow cytometric and ELISA revealed increased CD8+T cell infiltration, reduced TAMs and enhanced Th1/Th2 cytokine balance in multiple mouse models of HCC.ConclusionsOPN/CSF1/CSF1R axis plays a critical role in the immunosuppressive nature of the HCC microenvironment. Blocking CSF1/CSF1R prevents TAM trafficking and thereby enhances the efficacy of immune checkpoint inhibitors for the treatment of HCC.
Gun laws and school safety
Authors: Ghiani Marco , Hawkins Summer Sherburne , Baum Christopher F 
Published: March 2019

BackgroundThis paper examines the associations between state-level gun control and adolescent school safety overall and by student sex, age, and race.MethodsWe used data on 926 639 adolescents from 45 states in the 1999–2015 Youth Risk Behavior Surveys. Students self-reported on weapon carrying at school, the number of times they experienced weapon threats or injuries at school, the number of school days missed due to feeling unsafe, and weapon carrying at any location. For each state and year, 133 gun laws were combined into an index of gun control strength. Difference-in-differences logistic regression models were used to evaluate the associations of stricter gun laws with binary measures of students’ weapon carrying and perception of school safety, controlling for individual and state characteristics, as well as year and state fixed effects.ResultsAn IQR increase in the index (ie, a 15-point increase corresponding to a strengthening of gun control) was associated with a 0.8-percentage point decrease in the probability of weapon threats at school (p=0.029), a 1.1-percentage point decrease in the probability of missing school due to feeling unsafe (p=0.002) and a 1.9-percentage point decrease in the probability of carrying weapons at any location (p=0.001). Stricter gun laws had a stronger negative association with weapon carrying among males compared with females. Stricter gun laws were also differentially associated with weapon carrying by race/ethnicity.ConclusionsThe adoption of stricter state gun laws was associated with improvements in school climate and subjective perceptions of safety.
Transversus thoracis muscle plane block in cardiac surgery: a pilot feasibility study
Authors: Fujii Satoru , Roche Matthew , Jones Philip M , Vissa Deepti , Bainbridge Daniel , Zhou Jian Ray 
Published: March 2019

Introduction
Cardiac surgery patients often experience significant pain after median sternotomy. The transversus thoracis muscle plane (TTP) block is a newly developed, single-shot nerve block technique that provides analgesia for the anterior chest wall. In this double-blind pilot study, we assessed the feasibility of performing this novel block as an analgesic adjunct.

Methods
All patients aged 18–90 undergoing elective cardiac surgery were randomized to the block or standard care control group on admission to the intensive care unit after surgery. Under ultrasound guidance, patients in the block group received the TTP block with 20 mL of either 0.3% or 0.5% ropivacaine bilaterally, based on weight. The control group did not receive any injections. All blocks were performed by a single anesthesiologist, and data collection was performed by blinded assessors. The primary feasibility outcomes were rate of recruitment, adherence, and adverse events. The rate of recruitment was defined as the ratio of patients giving informed consent to the number of eligible patients who were approached to participate. Secondary outcomes included 12-hour and 24-hour Numeric Rating Scale (NRS) pain scores, 24-hour hydromorphone and acetaminophen requirements, time to extubation, time to first opioid administration, and patient satisfaction (on a yes/no questionnaire) at 24 hours.

Results
Twenty patients were approached for this study and 19 were enrolled. Eight patients received the intended intervention in each group. The recruitment rate was 95% of all approached eligible patients, and the adherence rate to treatment group was 94%. There were no block-related adverse events. The mean (SD) NRS pain scores at rest were 3.3 (3.2) in the block group vs 5.6 (3.2) in the control group at 12 hours. At 24 hours, the pain scores were 4.1 (3.9) vs 4.1 (3.3) in the block and control group, respectively. The mean (SD) 24-hour hydromorphone administration was 1.9 (1.1) mg in the block group vs 1.8 (0.9) mg in the control group.

Discussion
The TTP block is a novel pain management strategy poststernotomy. The results reveal a high patient recruitment, adherence, and satisfaction rate, and provide some preliminary data supporting safety.

Trial registration number

NCT03128346
.