bluuebunny/crossref_metadata_2025_split huggingface dataset:
The efficacy of working memory training in improving crystallized intelligence
Authors: Alloway Tracy , Alloway Ross 
Published: July 2019

AbstractCrystallized intelligence (Gc) is thought to reflect skills acquired through knowledge and experience and is related to verbal ability, language development^1^ and academic success^2^. Gc, together with fluid intelligence (Gf), are constructs of general intelligence^3^. While Gc involves learning, knowledge and skills, Gf refers to our ability in tests of problem-solving, pattern matching, and reasoning. Although there is evidence that Gf can be improved through memory training in adults^4^, the efficacy of memory training in improving acquired skills, such as Gc and academic attainment, has yet to be established. Furthermore, evidence of transfer effects from gains made in the trained tasks is sparse^5^. Here we demonstrate improvements in Gc and academic attainment using working memory training. Participants in the Training group displayed superior performance in all measures of cognitive assessments post-training compared to the Control group, who received knowledge-based training. While previous studies have indicated that gains in intelligence are due to improvements in test-taking skills^6^, this study demonstrates that it is possible to improve crystallized skills through working memory training. Considering the fundamental importance of Gc in acquiring and using knowledge and its predictive power for a large variety of intellectual tasks, these findings may be highly relevant to improving educational outcomes in those who are struggling.
Overcoming high temperature inhibition of flower formation and fruit production without bees
Authors: Liptay Albert , Salzman Ron , Stoller Jerry , Orzolek Michael 
Published: July 2019

AbstractFlower formation in the Cucurbitaceae family is compromised at high temperatures; both male and female flowers and therefore fruit productivity are greatly reduced as the growing temperatures for these vegetable crops are increased above 26C. This intractable phenomenon has been documented both with outdoor field experiments at various latitudes on the eastern seaboard in the USA and in a laboratory, temperature-regulated setting. We now report that an agricultural product, FP, which has been, and is used globally on many commercial crops to increase flower number and strength during blossom formation and development, overcomes the apparent refractory floral initiation and development at high temperatures. This is a new and unexpected finding. Additionally, in another facet of the experiments reported here, the parthenocarpic fruit development potential of FP was tested by eliminating bee pollination. This aspect of the study was addressed in part because of the recent concerns with bee colony collapse disorder. Flower formation, flower development and fruit yield were increased by FP over the bee-pollinated, untreated controls at high temperatures. FP was developed over a number of years of outdoor field trials as an approach to crop productivity that included hormonal regulation of floral strength and supported by mineral supplements through to the fruit production process.
Prediction of Evolutionarily important catalytic amino acid of Mycobacterium tuberculosis O-Succinylbenzoate synthase through in silico mutational analysis
Authors: B Babajan , M Chaitanya , CM Anuradha , Chitta Suresh Kumar 
Published: July 2019

AbstractThe emergence of tuberculosis resistant to multiple, first- and second-line antibiotics poses challenges to a global control strategy that relies on standard drug treatment regimens. The high drug-resistant strains of Mycobacterium tuberculosis (Mtb) have been implicated in outbreaks and have been found throughout the world; a comprehensive understanding, the magnitude of this threat requires an accurate assessment of the worldwide burden of resistance. In an attempt to design anti-TB drugs, the target chosen is a key enzyme of Mtb, O-Succinylbenzoate synthase (OSBS), which is an attractive target for its role in electron transport chain as OSBS is not available in humans. An attempt has been to built the 3-D structure of Mtb-OSBS using online Swiss model server. With sequence alignment and scan motif identification, the importance of evolutionarily significant residues that are of functional importance for ligand binding and that form active sites were well established. Molecular simulation calculations of Mtb-OSBS model indicated evolutionarily conserve residues (Lys110 and Lys212) are the best in molecular interaction with substrate 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). The in silico mutational analysis of Mtb-OSBS model showed the evolutionarily conserved residues that are essential for catalytic activity. It has been found that active site amino acids of Mtb-OSBS are very important to maintain activity of the enzyme, which provides a novel approach to design new pharmacophore SHCHC substrate analogs against Mtb-OSBS. A series of SHCHC substrate analogs (1–100) compounds have been docked with the amino acid residues at the active site of the Mtb-OSBS enzyme, using AutoDock 4.0, a program employed to perform automated molecular docking. The free energies of binding (∆G) and inhibition constants (Ki) of the docked compounds were calculated by the Lamarckian Genetic Algorithm (LGA). Excellent to good correlations between the calculated and experimental Ki values were reported.
Oxytocin makes us trusting but not gullible
Authors: Mikolajczak Moïra , Lane Anthony , Gross James , de Timary Philippe , Luminet Olivier 
Published: July 2019

AbstractOriginally known for its role in childbirth and lactation, oxytocin (OT) has recently proved to play a key role in social behavior. Deprived of OT, humans are unable to recognize and to bond to their peers. Inversely, once boosted with OT, people become more caring, trusting and generous. Effect-sizes on trust and generosity were sufficiently large that OT started to be perceived as a natural drug that would make people credulous. But could OT really impede judgment and lead individuals to trust untrustworthy peers? Here we show that oxytocin makes people trusting, but not gullible. Namely, OT did not have a trust-enhancing effect on people who interacted with seemingly unreliable peers. These results emphasize that the effect of OT is much more context-dependent than previously thought. This finding therefore invalidates some of the potential commercial or military applications of oxytocin.
Theoretical studies on the pK~a~ values of perfluoroalkyl carboxylic acids: Non-helical conformation acidity constants for n-perfluorooctanoic acid (n-PFOA)
Authors: Rayne Sierra , Forest Kaya 
Published: July 2019

AbstractA molecular mechanics force field method (MMFF94) systematic rotor conformational search was conducted on the well known environmental contaminant n-perfluorooctanoic acid (n-PFOA). The MMFF94 conformational search yielded 2915 separate low- through high-energy conformers of n-PFOA. Ranking of these structures gave the 94 lowest MMFF94 energy conformations that were subjected to subsequent density functional theory (DFT) computational investigations at the B3LYP/6-311++G(d,p) level of theory. Application of a thermodynamic cycle approach, coupled with aqueous and gas phase DFT calculations on the molecular and anionic forms for each of the 94 lowest energy n-PFOA conformers, gave estimated acidity constants (pK~a~ values) for a final converged set of twelve n-PFOA conformers, including the global minimum helical perfluoroalkyl chain geometry and eleven non-helical higher energy conformations. Collectively, the twelve lowest energy conformers appear to completely encompass the global conformational space for n-PFOA, indicating no higher energy conformations likely remain that could appreciably influence the observed composite aqueous pK~a~ of this compound. The estimated pK~a~ values of all eleven non-helical n-PFOA conformers were within 0.1 pK~a~ units of the helical conformer pK~a~. The findings support previous predictions and recent experimental evidence for an aqueous phase n-PFOA monomeric pK~a~ of about zero.
Chromosomal mutational algebra: a new algebra to manipulate chromosomal mutation
Authors: Mazumdar Dipankar 
Published: July 2019

AbstractThis study leads to a new algebra. An algebra is defined on the common mechanisms of chromosomal mutation. The algebra (S^[PSI](C)^, ~*~, ', [DELTA], D) is constructed for a given C and [PSI]. This algebra represents the most common chromosomal mutational mechanisms. This can lead to a new way to manipulate chromosomal mutation with higher structures of abstract mathematics. The first proposal of the algebra was reported in Mazumdar et al., 2007.
Endogenous Viral Etiology of Prion Diseases
Authors: Bandea Claudiu 
Published: July 2019

AbstractTransmissible spongiform encephalopathies (TSEs), or prion diseases, are a group of incurable neurodegenerative disorders, including Kuru and Creutzfeldt-Jakob disease in humans, “mad cow” disease in cattle, and scrapie in sheep. This paper presents structural, genetic, and evolutionary evidence supporting an endogenous TSE virus model that integrates the three major traditional views on the nature of TSE pathogens, the conventional virus view, the prion hypothesis, and the virino concept, into a novel conceptual and evolutionary framework. According to this model, the TSE pathogens are symbiotic endogenous viruses that inadvertently produce transmissible viral particles that lack the viral genome and are composed primarily of the viral prion protein (PrP). Production of defective viral particles that contain a partial genome or lack the viral genome entirely is a relatively common event in the life cycle of many viruses. Similar to the normal viral particles, which contain a genome, these defective viral particles can be transmitted to new host cells. Obviously, in the absence of viral genome, these protein-only viral particles cannot establish a productive infection. However, if these viral particles enter a host cell that carries the parental or a related virus and induce the production of similar protein-only particles, then they would appear as self-replicating, protein-only infectious pathogens if mistakenly taken out from the context of the viral life cycle. This misconception, which is rooted into the current dogma of viruses as viral particles, led to the development of the prion theory. The endogenous TSE virus model is consistent with the TSE data and offers solutions to many enigmatic features associated with TSE, including the function of PrP that, despite more than two decades of TSE research conducted primarily within the framework of the prion hypothesis, is still not known. According to the TSE endogenous virus model, PrP is the protein of an endogenous virus that has co-evolved with their vertebrate hosts by providing a protective function against pathogenic viruses. The evidence for the endogenous TSE virus model and for the antiviral protective function of PrP is strong, and they are fully open to additional experimental testing. The endogenous virus model opens the TSE research field to new interpretations and directions, both in basic research and in associated biomedical and public health fields, and could lead to development of new diagnostic and therapeutic approaches.
Genes of the serotonergic and dopaminergic pathways and their interaction affect the expression of Behavioural and Psychological Symptoms in Dementia (BPSD).
Authors: Proitsi Petroula , Lupton Michelle , Reeves Suzanne , Hamilton Gillian , Archer Nicola , Martin Belinda , hollingworth Paul , Lawlord Brian , Gill Michael , Owen Michael , Williams Julie , Lovestone Simon , Powell John 
Published: July 2019

AbstractAlthough there is evidence for the involvement of genes of serotonergic and dopaminergic systems in the manifestation of the Behavioural and Psychological Symptoms in Dementia (BPSD), genetic association studies are contradictory. We used 1008 probable AD patients from the UK and applied a Multiple Indicators Multiple Causes (MIMIC) approach to investigate the effect of 11 polymorphisms in the serotonergic and dopaminergic systems, on four behavioural sub-phenotypes, namely &quot;psychosis&quot;,&quot; moods&quot;, &quot;agitation&quot; and &quot;behavioural dyscontrol&quot;, as well as on 12 NPI items. Significant findings included the association of DRD1 A48G with &quot;psychosis&quot; (p=0.037), the association of DAT1 VNTR with &quot;agitation&quot; (p=0.006) and the association of DRD4 with &quot;moods&quot; sub-phenotype (p=0.008). In addition, associations were identified between DRD1 A48G and DAT1 VNTR with aberrant motor behaviour (AMB) symptoms (p=0.001 and p=0.015 respectively), between DRD4 and sleep disturbances (p=0.018) and between 5HTTLPR and apathy (p=0.033). Finally, significant interactions were observed between COMT Val158Met and 5HTTLPR with &quot;psychosis&quot; (p=0.026), between HTTLPR and STin2 with &quot;psychosis&quot; (p=0.005), between DAT1 3&apos;UTR VNTR and COMT Val158Met with &quot;agitation&quot; (p=0.0001) and between DAT1 3&apos;UTR VNTR and 5HTTLPR with the &quot;moods&quot; factor (p=0.0027). The complexity of the interrelations between genetic variation, behavioural symptoms and clinical variables was efficiently captured by this MIMIC model.
Robustness of self-organised systems to changes in individual level behaviour: an example from real and simulated self-organised snail aggregations
Authors: Stafford Richard , Davies Mark , Williams Gray 
Published: July 2019

AbstractPerfect behaviours that are optimal to the environment an agent operates within rarely exist in real animals or in robotic systems. The costs (be they biological or economic) of building sensors and processing the information they capture become excessive compared to the small advantages that occur from the modifications of behaviour. Many self-organised systems are thought to change their properties as a result of changes in individual behaviour. Here, using both natural systems and computer simulations, we demonstrate that intertidal snail aggregations slightly decrease in size when individuals forage for shorter periods due to hotter and more desiccating conditions – a non-optimal behaviour for the snails since aggregation reduces desiccation stress. However, this decrease only occurs in simple experimental systems (and simulations of these systems). When studied in their more complex natural environment, and when simulated in such an environment, using the same information-processing behaviours, no difference in aggregation behaviour was found between hot and cool days. These results give an indication of the robustness of self-organised systems to changes in individual-level behaviour. They demonstrate that information processing capabilities of self-organised groups may not need to be as great as for agents that perform solitary tasks, and also that oversimplified tests of swarm intelligence may not give a true indication of how tasks may be performed in a more complex environment.
Organising metabolic networks: cycles in flux distributions
Authors: Kritz Maurício , dos Santos Marcelo , Urrita Sebastián , Schwartz Jean-Marc 
Published: July 2019

AbstractMetabolic networks are among the most widely studied biological systems. The topology and interconnections of metabolic reactions have been well described for many species, but are not sufficient to understand how their activity is regulated in living organisms. The principles directing the dynamic organisation of reaction fluxes remain poorly understood. Cyclic structures are thought to play a central role in the homeostasis of biological systems and in their resilience to a changing environment. In this work, we investigate the role of fluxes of matter cycling in metabolic networks. First, we introduce a methodology for the computation of cyclic and acyclic fluxes in metabolic networks, adapted from an algorithm initially developed to study cyclic fluxes in trophic networks. Subsequently, we apply this methodology to the analysis of three metabolic systems, including the central metabolism of wild type and a deletion mutant of Escherichia coli, erythrocyte metabolism and the central metabolism of the bacterium Methylobacterium extorquens. The role of cycles in driving and maintaining the performance of metabolic functions upon perturbations is unveiled through these examples. This methodology may be used to further investigate the role of cycles in living organisms, their pro-activity and organisational invariance, leading to a better understanding of biological entailment and information processing.
Cortical activity modulation of language processing by dynamic optimization of task complexity and functional restrictions
Authors: Ghosh Shantanu , Basu Amrita , Khushu Subash , Kumaran Senthil 
Published: July 2019

AbstractLanguage, regarded as a hierarchical cognitive code activated by functional operational modes of the brain by most neuropsychologists, is characterized by increased cognitive load in successively higher levels of processing. Language comprehension is posited to be executed through symbolic-iconic information being encoded neurally as modulated phenomena, and can be studied in vivo by functional brain imaging. Using a lexical decision-making task in conjunction with syntactic error correction that effectively isolated the regulatory neural substrate of processing structural-functional information, and minimizing the possible confounds of gender and proficiency, functional magnetic resonance imaging (fMRI) was performed on bilingual volunteers to ascertain the attentional modulation of second language lexical and sentence processing. Our results indicate that while a right posterior cingulate gyrus-precuneus-lingual gyrus-cerebellar loop processes lexical information, the left inferior and middle frontal cortices are critically involved in the implementation of a structural-functional decision-making procedural loop in mediating second language comprehension.
Magnetoencephalography May Allow the Electromagnetic &apos;Biopsy&apos; of Central Nervous System Neoplastic Tissue
Authors: Pearlman Michael , Castillo Eduardo , Papanicolaou Andrew , Butler Ian , Slopis John , Frye Richard 
Published: July 2019

AbstractDeveloping a non-invasive method for definitively diagnosing intracranial neoplasms would reduce the risks involved with diagnosis and improve the treatment of such tumors. We used magnetoencephalography to measure the power spectral densities of malignant brain tumor cells in vitro and found that meningioma and medulloblastoma cells produce unique electromagnetic signatures. Our results suggest that non-invasive identification of neoplastic tissue is possible through the use of magnetoencephalography.
Spherulites of A[beta]~42~ in vitro and in Alzheimer's disease
Authors: Exley Christopher , House Emily , Collingwood Joanna , Davidson Mark , Cannon Danielle , Donald Athene 
Published: July 2019

AbstractSeveral amyloid-forming proteins and peptides, including insulin^1^, [beta]-lactoglobulin^2^ and albumin^3^, form spherulites in vitro under non-physiological solution conditions. These micrometer-sized, roughly spherical structures are composed of ordered arrays of [beta] sheets of amyloid fibrils in radial arrangements which, characteristically, show a typical Maltese cross pattern of light extinction under the polarizing microscope. The physiological significance, if any, of these amyloid super assemblies is unknown although in Alzheimer's disease there is the suggestion that senile plaques composed primarily of [beta] sheets of A[beta]~42~ are spherulitic^4^. Herein we describe the first observation of the formation in vitro of spherulites of A[beta]~42~. They were formed under near-physiological conditions in which the [beta] sheet conformation of pre-formed aggregates of A[beta]~42~ had been abolished following the addition of an excess of copper. Incubation of these preparations at 37^o^C for up to 9 months resulted in the formation of spherulites. These were globular in appearance, 5 - 20 microns in diameter, and exhibited the typical Maltese cross pattern of light extinction. Similarly to other amyloid spherulites formed in vitro they bound Congo red without giving apple-green birefringence^5^ while also being thioflavin T-positive when viewed by fluorescence microscopy^3^. Near-identical spherulitic structures were also observed in abundance in 30 micron thick sections of Alzheimer's disease brain tissue. Synchrotron x-ray fluorescence showed that the location of these spherulites in AD tissue coincided with locally elevated concentrations of tissue copper. The formation in vitro of spherulites of A[beta]~42~ which morphologically appeared analogous to spherulitic structures observed in vivo strongly supports the hypothesis that spherulites and senile plaques in AD tissue are one and the same structures and that their ultimate formation involves copper.
Antibody responses to a Cryptosporidium parvum rCP15/60 vaccine
Authors: Burton Alexandra , Nydam Daryl , Jones Gary , Zambriski Jennifer , Linden Thomas , Cox Graham , Davis Randy , Brown Alicia , Bowman Dwight 
Published: July 2019

AbstractCryptosporidium parvum is a zoonotic apicomplexa-protozoan pathogen that causes gastroenteritis and diarrhoea in mammals worldwide. The organism is transmitted by ingestion of oocysts, which are shed in faeces, and completes its lifecycle in a single host.^1^ C. parvum is ubiquitous on dairy operations worldwide and is one of the leading causes of diarrhoea in calves on these farms.^2,3^ Here, for the first time, we describe the antibody response in a large group of cows to a recombinant C. parvum oocyst surface protein (rCP15/60) vaccine and the antibody response in calves fed rCP15/60-immune colostrum produced by these vaccinated cows. Results of recent genotype surveys indicate that calves are the only major reservoir for C. parvum infections in humans.^4^ Human C. parvum infections are particularly prevalent and often fatal in neonates in developing countries and to immunocompromised people, such as AIDs patients.^4^ Drug therapy against cryptosporidiosis is limited and not wholly efficacious in either humans or calves^5^, making development of an effective vaccine of paramount importance. To date, there is no commercially available effective vaccine against C. parvum, although passive immunization utilizing different zoite surface (glyco)proteins has showed promise.^6-9^ All cows we vaccinated produced an antibody response to the rCP15/60 vaccine and the magnitude of response correlated strongly with the subsequent level of antibody in their colostrum. All calves fed rCP15/60-immune colostrum showed a dose-dependent absorption of antibody. Our results demonstrate that vaccination of cows with rCP15/60 successfully induces antibodies against CP15/60 in their serum and colostrum and that these antibodies are then well absorbed when fed to neonatal calves. With further research, this C. parvum vaccine may well be a practical method of conferring passive protection to calves against cryptosporidiosis. Furthermore, a specifically targeted immune-colostrum may be valuable in protection and treatment of immunocompromised human patients with cryptosporidiosis.