bluuebunny/crossref_metadata_2025_split huggingface dataset:
A Quantitative General Population Job Exposure Matrix for Occupational Daytime Light Exposure
Authors: Vested Anne , Schlünssen Vivi , Burdorf Alex , Andersen Johan H , Christoffersen Jens , Daugaard Stine , Flachs Esben M , Garde Anne Helene , Hansen Åse Marie , Markvart Jakob , Peters Susan , Stokholm Zara , Vestergaard Jesper M , Vistisen Helene T , Kolstad Henrik Albert 
Published: April 2019

AbstractHigh daytime light levels may reduce the risk of affective disorders. Outdoor workers are during daytime exposed to much higher light intensities than indoor workers. A way to study daytime light exposure and disease on a large scale is by use of a general population job exposure matrix (JEM) combined with national employment and health data. The objective of this study was to develop a JEM applicable for epidemiological studies of exposure response between daytime light exposure, affective disorders, and other health effects by combining expert scores and light measurements. We measured light intensity during daytime work hours 06:00–17:59 for 1–7 days with Philips Actiwatch Spectrum® light recorders (Actiwatch) among 695 workers representing 71 different jobs. Jobs were coded into DISCO-88, the Danish version of the International Standard Classification of Occupations 1988. Daytime light measurements were collected all year round in Denmark (55–56°N). Arithmetic mean white light intensity (lux) was calculated for each hour of observation (n = 15,272), natural log-transformed, and used as the dependent variable in mixed effects linear regression models. Three experts rated probability and duration of outdoor work for all 372 jobs within DISCO-88. Their ratings were used to construct an expert score that was included together with month of the year and hour of the day as fixed effects in the model. Job, industry nested within job, and worker were included as random effects. The model estimated daytime light intensity levels specific for hour of the day and month of the year for all jobs with a DISCO-88 code in Denmark. The fixed effects explained 37% of the total variance: 83% of the between-jobs variance, 57% of the between industries nested in jobs variance, 43% of the between-workers variance, and 15% of the within-worker variance. Modeled daytime light intensity showed a monotonic increase with increasing expert score and a 30-fold ratio between the highest and lowest exposed jobs. Building construction laborers were based on the JEM estimates among the highest and medical equipment operators among the lowest exposed. This is the first quantitative JEM of daytime light exposure and will be used in epidemiological studies of affective disorders and other health effects potentially associated with light exposure.
Etiology of Pulmonary Infections in Human Immunodeficiency Virus–infected Inpatients Using Sputum Multiplex Real-time Polymerase Chain Reaction
Authors: Maartens Gary , Griesel Rulan , Dube Felix , Nicol Mark , Mendelson Marc 
Published: April 2019

Abstract

Background
There are limited data on the etiology of respiratory infections in human immunodeficiency virus (HIV)–infected patients in resource-limited settings.

Methods
We performed quantitative multiplex real-time polymerase chain reaction (PCR) for Pneumocystis jirovecii and common bacterial and viral respiratory pathogens on sputum samples (spontaneous or induced) from a prospective cohort study of HIV-infected inpatients with World Health Organization danger signs and cough. Mycobacterial culture was done on 2 sputum samples, blood cultures, and relevant extrapulmonary samples.

Results
We enrolled 284 participants from 2 secondary-level hospitals in Cape Town, South Africa: median CD4 count was 97 cells/μL, 64% were women, and 38% were on antiretroviral therapy. One hundred forty-eight had culture-positive tuberculosis, 100 had community-acquired pneumonia (CAP), 26 had P. jirovecii pneumonia (PJP), and 64 had other diagnoses. Probable bacterial infection (&gt;105 copies/mL) was detected in 133 participants; the prevalence was highest in those with CAP (52%). Haemophilus influenzae and Streptococcus pneumoniae were the commonest bacterial pathogens detected; atypical bacteria were uncommon. Viruses were detected in 203 participants; the prevalence was highest in those with PJP (85%). Human metapneumovirus was the commonest virus detected. Multiple coinfections were commonly detected.

Conclusions
Sputum multiplex PCR could become a useful diagnostic tool for bacterial respiratory infections in HIV-infected inpatients, but its value is limited as quantitative cutoffs have only been established for a few bacterial pathogens and validation has not been done in this patient population. We found a high prevalence of respiratory viruses, but it is unclear whether these viruses were causing infection as there are no accepted quantitative PCR cutoffs for diagnosing respiratory viral infections.
A query theory account of a discrete choice experiment under oath
Authors: Kemper Nathan P , Popp Jennie S , Nayga Rodolfo M 
Published: April 2019

Abstract
One limitation of stated-preference methods is the formation of hypothetical bias. To address this, the honesty oath has been used as an ex ante technique to reduce hypothetical bias. Our study provides a query account of the honesty oath in a discrete-choice experiment setting by using Query Theory to examine the mechanism behind the effectiveness of the honesty oath. Our results show that the honesty oath can change the content and order of queries; potentially reducing hypothetical bias in discrete choice experiments. The study suggests the potential usefulness of Query Theory in examining thought processes of respondents in valuation studies.
The relative importance of sub-populations to the Gulf of Maine stock of Atlantic cod
Authors: Dean Micah J , Elzey Scott P , Hoffman William S , Buchan Nicholas C , Grabowski Jonathan H 
Published: April 2019

AbstractDiscriminating among sympatric sub-populations is critical not only for the investigation of fish population structure, but also for effective fishery management. The Gulf of Maine stock of Atlantic cod contains two genetically distinct sub-populations whose spawning grounds overlap in space, but not season. Lack of a practical tool for discriminating between these spring and winter spawners has thus far prevented addressing metapopulation structure in stock assessments and fishery management plans. To address this issue, we developed a simple approach to discriminate between the sympatric sub-populations that relies on internal otolith structures. Using a logistic regression model fit to training data (n = 577) and evaluated through cross-validation, we correctly classified individuals with 81% accuracy and predicted the overall sub-population mixture within 1%. Applying the model to a broader population dataset (n = 1642) revealed that spring-spawned cod are more concentrated within closed fishing areas and therefore experience a lower mortality rate. However, despite dominating older age classes and comprising a large fraction of the spawning stock, these spring cod contribute little to recruitment. This apparent sub-population difference in the stock–recruitment relationship has important consequences for assessment models and the success of management measures designed to rebuild the stock.
Prospective Assessment of Cytomegalovirus Immunity in High-Risk Donor-Seropositive/Recipient-Seronegative Liver Transplant Recipients Receiving Either Preemptive Therapy or Antiviral Prophylaxis
Authors: Limaye Ajit P , Green Margaret L , Edmison Bradley C , Stevens-Ayers Terry , Chatterton-Kirchmeier Sam , Geballe Adam P , Singh Nina , Boeckh Michael 
Published: April 2019

Abstract
The differential impact of preemptive therapy (PET) and antiviral prophylaxis (AP) on development of cytomegalovirus (CMV)–specific neutralizing antibody (nAb) and T-cell responses have not previously been directly compared in high-risk donor-seropositive/recipient-seronegative (D+R−) organ transplant recipients. We prospectively assessed T-cell and nAb responses 3 months after transplantation in cohorts of high-risk D+R− liver transplant recipients who received either PET (n = 15) or AP (n = 25) and a control group of CMV-seropositive transplant recipients (R+) (AP; n = 24). CMV phosphoprotein 65 (pp65)– and immediate early protein 1–specific multifunctional T-cell responses were determined by means of intracellular cytokine staining and nAbs against BADrUL131-Y4 CMV in adult retinal pigment epithelial cell line-19 human epithelial cells; nAbs were detected in 8 of 12 (67%) in the PET group, none of 17 in the AP group, and 20 of 22 (91%) in the R+ group. Multifunctional CD8 and CD4 T-cell responses to pp65 were generally similar between PET and R+ groups, and lower for the AP group; multifunctional CD4 responses were similar across all groups. Among D+R− liver transplant recipients, PET was associated with the development of greater nAb and multifunctional CD8 T-cell responses compared with AP, providing a potential mechanism to explain the relative protection against late-onset disease with PET. Future studies are needed to define specific immune parameters predictive of late-onset CMV disease with AP.
Susceptibility of Different Instars of Striacosta albicosta (Lepidoptera: Noctuidae) to Vip3A, a Bacillus thuringiensis (Bacillaceae: Bacillales) Protein
Authors: Farhan Yasmine , Smith Jocelyn L , Schaafsma Arthur W 
Published: April 2019

Abstract
Striacosta albicosta (Smith) (Lepidoptera: Noctuidae) is an important pest of corn, Zea mays L. in the Great Lakes region, which can be controlled by transgenic corn expressing Vip3A protein from Bacillus thuringiensis. To inform insect resistance management, the susceptibility, survival, and development of first, third, and fifth instar S. albicosta to Vip3A was determined using protein-overlay and corn tissue bioassays. Tissue bioassays were also used to determine the quantity of corn tissues with and without Vip3A-expression consumed by various instars. In diet bioassays, third and fifth instars were significantly less susceptible to Vip3A compared with first instars; however, no significant difference was observed in susceptibility of older instars. In tissue bioassays, survival was lowest for larvae fed Vip3A-expressing tissues, ranging from 0 to 21%, however, developmental measures of larvae fed Vip3A-expressing tissues did not differ from those fed artificial diet or tissues of other Bt events. Consumption of Vip3A × Cry1Ab tissues did not differ from that of Cry1Ab for each instar. Estimated Vip3A exposure of first instars ranged from 3 to 57 times higher than the concentration required for 99% mortality (LC99) based on the product of the reported Vip3A expression in transgenic corn tissues and the consumption observed in tissue bioassays; however, the estimated exposure of third and fifth instars to Vip3A was lower than their respective LC99. These findings suggest that first instar S. albicosta maybe exposed to a high dose of Vip3A under field conditions; however, Vip3A-expression in corn may not be high dose against older instars, increasing the risk of resistance development.
Susceptibility of North Dakota Hessian Fly (Diptera: Cecidomyiidae) to 31 H Genes Mediating Wheat Resistance
Authors: Anderson Kirk M , Harris Marion O 
Published: April 2019

Abstract
The agricultural landscape of North Dakota is changing. Corn and soybean are now commonplace, but once were rare. Spring sown wheat Triticum aestivum L. and durum wheat Triticum turgidum spp. durum continue to be dominant, but more winter-sown wheat is expected in the future. The presence of wheat in the landscape throughout much of the year will benefit populations of the Hessian fly, Mayetiola destructor (Say), which occurs throughout the state, sometimes in large numbers. Hessian fly is unusual among crop pests for which resources for plant resistance are well developed. On wheat genotypes expressing a single effective H resistance gene, 100% of larvae die before exhibiting any growth. Over 35 H genes in the public domain are available for crossing into elite cultivars. We explored the effectiveness of 31 Hessian fly resistance genes for a North Dakota Hessian fly population. Six genes—H4, H15, H21, H23, H26, and H29—caused 100% larval mortality. Seven others caused at least 80% mortality. Experimental data were used to address three additional questions. Do adult females avoid laying eggs on plants that will kill their offspring: Are neonate larvae able to detect resistance that will end up killing them? Do all 31 genes confer equal protection against larval-induced growth deficits? North Dakota wheat breeders have the necessary tools to create highly resistant wheat cultivars. So far, H genes have been deployed singly in cultivars. Advances in plant breeding will enable gene stacking, a more durable strategy over time.
The Radically Routine Rohingya Case
Authors: Akhavan Payam 
Published: April 2019

Abstract
The campaign of atrocities against Myanmar’s Rohingya minority is among the most pressing human rights challenges of our times. However, since Myanmar is not a party to the Statute of the International Criminal Court (ICC), proponents of international justice have been forced to pursue accountability through creative means. On 6 September 2018, the Pre-Trial Chamber of the ICC ruled that the Court had jurisdiction over some of the atrocities. Despite having been initiated in the territory of a non-state party (Myanmar), the Court held that the crime of deportation — that is, forced displacement across an international boundary — has been completed on the territory of a state party, namely Bangladesh. This unprecedented backdoor to The Hague has stirred considerable controversy, both in diplomatic and academic circles. Yet, just how radical is the deportation theory upheld in this Decision? It would seem that the exercise of territorial jurisdiction over crimes with transboundary elements is a rather routine and unremarkable practice among states and, by extension, with respect to the ICC. It is trite law that deportation — like human trafficking and similar crimes — is initiated in the territory of one state and completed in the territory of another state. Considered in this light, the so-called Rohingya case at the ICC is radically routine.
Natural Variation in Flower Color and Scent in Populations of Eruca sativa (Brassicaceae) Affects Pollination Behavior of Honey Bees
Authors: Barazani Oz , Erez Tal , Ogran Ariel , Hanin Nir , Barzilai Michal , Dag Arnon , Shafir Sharoni 
Published: April 2019

Abstract
Plants of Eruca sativa Mill. (Brassicaceae) from desert and Mediterranean populations in Israel differ in flower color and size. In the desert habitat, the population has higher abundance of flowers with cream color and longer petals, whereas in the Mediterranean habitat, the population has higher abundance of flowers with yellow and shorter petals. Choice experiments with honey bee foragers (Apis mellifera Linn., Apidae, Hymenoptera), the main pollinator in the natural habitat in Israel, confirmed that they are more attracted to the yellow flower morph than to the cream one. A proboscis extension response test indicated that honey bees are able to discriminate between flower scents of the desert and Mediterranean populations. Considering the advantage of plants of the yellow morph in attracting pollinators, we further tested in a common garden experiment whether these possess higher fitness than plants of the desert population. Indeed, a significant association was found between flower color and fruit set, and seed mass. In general, our results provide evidence for ecotypic differentiation between populations imposed by pollinators. The advantage of the yellow color morph in attracting pollinators may explain its dominance among plants of the Mediterranean population. We discuss why the cream color morph may be dominant in the desert habitat, considering the possibility of different pollinators, tradeoffs between traits, or pleiotropy.
Rapid-Stretch Injury to Peripheral Nerves: Histologic Results
Authors: Warner Wesley S , Yeoh Stewart , Light Alan , Zhang Jie , Mahan Mark A 
Published: April 2019

Abstract

BACKGROUND
Although most severe peripheral nerve injuries result from high-speed mechanisms, there is no laboratory model to replicate this clinical condition.

OBJECTIVE
To qualitatively and quantitatively describe microanatomical injury of rapid stretch.

METHODS
The sciatic nerves of 36 Sprague-Dawley rats were subjected to rapid-stretch nerve injury, using fixed-direction strain produced via constrained weight drop applied to an intact nerve. Nerve injury severity was categorized by biomechanical parameters. Injury to nerve microarchitecture was quantified with serial longitudinal sectioning, with specific focus on the endoneurium, perineurium, and epineurium.

RESULTS
Four grades of stretch injury severity were determined by mathematical cluster analysis: sham, elastic stretch, inelastic stretch, and stretch rupture. Two patterns of injury to endoneurial architecture were quantified: loss of fiber undulation (straightened fibers) and rupturing of individual fibers (“microruptures”). Straightening of nerve fibers was the earliest accommodation to stretch injury and accounted for elongation during elastic stretch. Microruptures were distributed along the length of the nerve and were more severe and involved greater volume of the nerve at higher biomechanical severity. Epineurium and perineurium disruption increased in frequency with progressive injury severity, yet did not predict transition from one injury grade to another (P = .3), nor was it a hallmark of severe injury. Conversely, accumulation of microruptures provided strong correlation to nerve injury severity (Pearson's R = .9897) and progression to mechanical failure.

CONCLUSION
Nerve architecture is injured in a graded fashion during stretch injury, which likely reflects tissue biomechanics. This study suggests new considerations in the theoretical framework of nerve stretch trauma.
Outcomes with acyclovir treatment in herpes simplex encephalitis after surgery for solid CNS tumors: a case report and systematic review of the literature
Authors: Yari Niloofar , Benardete Ethan Alexander , Chen Wencong , Ambe Solomon Neba , Fonkem Ekokobe 
Published: April 2019

Abstract

Background
Herpes simplex encephalitis (HSE) occurring within 30 days after neurosurgery for solid CNS tumors is underrecognized and underreported but remains important because of high morbidity and mortality. We present the case of a 41-year-old woman who had HSE after craniopharyngioma surgery, and delayed recognition and treatment led to a poor outcome. Subsequently, we review reported HSE cases after neurosurgery for solid CNS tumors and describe outcomes after treatment with and without acyclovir.

Methods
A literature search was performed for cases meeting the above criteria. Information was gathered regarding patient demographics, tumor types, symptoms, diagnostic workup, therapy, and outcomes.

Results
Eighteen cases were studied. Encephalopathy, fever, and seizures were the most common symptoms. A majority of patients (78%) received IV acyclovir, with a 79% survival rate with treatment. Mortality rate was 100% in untreated cases. The median time to starting acyclovir was 17 postoperative days (range, 8-53 days). Most patients received steroids, but its use was not associated with a specific outcome.

Conclusions
HSE may develop following neurosurgical resection, and the threshold for suspicion of this condition should be extremely low in a patient who shows compatible symptoms (encephalopathy, fever, or seizures) or does not recover as planned. Moreover, in case of suspicion of HSE, acyclovir should be promptly started until infection can be definitely ruled out. A delay in diagnosis of HSE and failure to treat may result in severe morbidity as well as mortality. This observation may warrant further study.
Tumor-related neurocognitive dysfunction in patients with diffuse glioma: a retrospective cohort study prior to antitumor treatment
Authors: van Kessel Emma , Emons Michelle A C , Wajer Irene H , van Baarsen Kirsten M , Broekman Marike L , Robe Pierre A , Snijders Tom J , Van Zandvoort Martine J E 
Published: April 2019

Abstract

Background
Impairments in neurocognitive functioning (NCF) frequently occur in glioma patients. Both the tumor and its treatment contribute to these impairments. We aimed to quantify NCF in glioma patients before treatment and to investigate which factors influence NCF.

Methods
We performed a retrospective cohort study in diffuse glioma patients according to STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) criteria. All patients had undergone neuropsychological assessment as part of routine clinical care, before awake surgery. We studied “overall NCF” and NCF in 5 neurocognitive domains separately. For “overall NCF” and per domain, we performed analyses at 2 different levels of outcome measures: (1) group level: mean cognitive functioning of the study sample, and (2) individual level: the percentage of impaired patients. We performed multivariable logistic regression analyses to investigate which factors were associated with the occurrence of cognitive impairments.

Results
From our cohort of glioma patients (2010-2016), 168 patients met all the inclusion criteria. All cognitive domains were significantly affected at the group level. The percentages of neurocognitive impairments (–2SD) were highest for Executive Functioning, Psychomotor Speed, and Memory (26.5%, 23.2%, and 19.3%, respectively). Patients with high-grade glioma were affected more severely than patients with low-grade glioma. Tumor volume, isocitrate dehydrogenase status, WHO grade, and histology were associated with the occurrence of domain-specific impairments.

Conclusions
Cognitive impairment occurs in the majority of treatment-naive glioma patients. The domains Executive Functioning, Speed, and Memory are involved most frequently. These impairments in NCF are explained not only by tumor location and volume, but also by other (biological) mechanisms.
Targeted protein delivery: carbodiimide crosslinking influences protein release from microparticles incorporated within collagen scaffolds
Authors: Tanase Constantin Edi , Qutachi Omar , White Lisa J , Shakesheff Kevin M , McCaskie Andrew W , Best Serena M , Cameron Ruth E 
Published: April 2019

Abstract
Tissue engineering response may be tailored via controlled, sustained release of active agents from protein-loaded degradable microparticles incorporated directly within three-dimensional (3D) ice-templated collagen scaffolds. However, the effects of covalent crosslinking during scaffold preparation on the availability and release of protein from the incorporated microparticles have not been explored. Here, we load 3D ice-templated collagen scaffolds with controlled additions of poly-(DL-lactide-co-glycolide) microparticles. We probe the effects of subsequent N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride crosslinking on protein release, using microparticles with different internal protein distributions. Fluorescein isothiocyanate labelled bovine serum albumin is used as a model protein drug. The scaffolds display a homogeneous microparticle distribution, and a reduction in pore size and percolation diameter with increased microparticle addition, although these values did not fall below those reported as necessary for cell invasion. The protein distribution within the microparticles, near the surface or more deeply located within the microparticles, was important in determining the release profile and effect of crosslinking, as the surface was affected by the carbodiimide crosslinking reaction applied to the scaffold. Crosslinking of microparticles with a high proportion of protein at the surface caused both a reduction and delay in protein release. Protein located within the bulk of the microparticles, was protected from the crosslinking reaction and no delay in the overall release profile was seen.