bluuebunny/crossref_metadata_2025_split huggingface dataset:
Transcriptomic alterations in APP/PS1 mice astrocytes lead to early postnatal axon initial segment structural changes
Authors: Benitez María José , Retana Diana , Ordoñez-Gutiérrez Lara , Colmena Inés , Goméz María José , Álvarez Rebeca , Ciorraga María , Dopazo Ana , Wandosell Francisco , Garrido Juan José 
Published: November 2024

AbstractAlzheimer´s disease (AD) is characterized by neuronal function loss and degeneration. The integrity of the axon initial segment (AIS) is essential to maintain neuronal function and output. AIS alterations are detected in human post-mortem AD brains and mice models, as well as, neurodevelopmental and mental disorders. However, the mechanisms leading to AIS deregulation in AD and the extrinsic glial origin are elusive. We studied early postnatal differences in AIS cellular/molecular mechanisms in wild-type or APP/PS1 mice and combined neuron-astrocyte co-cultures. We observed AIS integrity alterations, reduced ankyrinG expression and shortening, in APP/PS1 mice from P21 and loss of AIS integrity at 21 DIV in wild-type and APP/PS1 neurons in the presence of APP/PS1 astrocytes. AnkyrinG decrease is due to mRNAs and protein reduction of retinoic acid synthesis enzymes Rdh1 and Aldh1b1, as well as ADNP (Activity-dependent neuroprotective protein) in APP/PS1 astrocytes. This effect was mimicked by wild-type astrocytes expressing ADNP shRNA. In the presence of APP/PS1 astrocytes, wild-type neurons AIS is recovered by inhibition of retinoic acid degradation, and Adnp-derived NAP peptide (NAPVSIPQ) addition or P2X7 receptor inhibition, both regulated by retinoic acid levels. Moreover, P2X7 inhibitor treatment for 2 months impaired AIS disruption in APP/PS1 mice. Our findings extend current knowledge on AIS regulation, providing data to support the role of astrocytes in early postnatal AIS modulation. In conclusion, AD onset may be related to very early glial cell alterations that induce AIS and neuronal function changes, opening new therapeutic approaches to detect and avoid neuronal function loss.
Fate of organic solvent-soluble extractives and arabinogalactan during brown rot degradation of siberian larch heartwood
Authors: Belt Tiina , Harju Anni , Venäläinen Martti , Kilpeläinen Petri 
Published: November 2024

AbstractThe decay resistance of durable heartwoods is primarily due to heartwood extractives, but some extractives have been found to be degradable by wood decaying fungi. We investigated the degradation of heartwood extractives in Siberian larch by the brown rot fungi Coniophora puteana and Rhodonia placenta and found that neither fungus caused the degradation of flavonoids, the primary organic solvent-soluble extractives in the larch samples. However, both fungi caused the gradual depletion of arabinogalactan, the polysaccharide extractive found in larch heartwood.
Initial pH determines the morphological characteristics and secondary metabolite production in Aspergillus terreus and Streptomyces rimosus cocultures
Authors: Boruta Tomasz , Foryś Martyna , Pawlikowska Weronika , Englart Grzegorz , Bizukojć Marcin 
Published: November 2024

AbstractThe influence of the initial pH on the morphology and secondary metabolite production in cocultures and axenic cultures of Aspergillus terreus and Streptomyces rimosus was investigated. The detected secondary metabolites (6 of bacterial and 4 of fungal origin) were not found in the cultures initiated at pH values less than or equal to 4.0. The highest mean levels of oxytetracycline were recorded in S. rimosus axenic culture at pH 5.0. Initiating the axenic culture at pH 5.9 led to visibly lower product levels, yet the presence of A. terreus reduced the negative effect of non-optimal pH and led to higher oxytetracycline titer than in the corresponding S. rimosus axenic culture. The cocultivation initiated at pH 5.0 or 5.9 triggered the formation of oxidized rimocidin. The products of A. terreus were absent in the cocultures. At pH 4.0, the striking morphological differences between the coculture and the axenic cultures were recorded.
Enhancement of physiology via adaptive transcription
Authors: Lissek Thomas 
Published: November 2024

Abstract
The enhancement of complex physiological functions such as cognition and exercise performance in healthy individuals represents a challenging goal. Adaptive transcription programs that are naturally activated in animals to mediate cellular plasticity in response to stimulation can be leveraged to enhance physiological function above wild-type levels in young organisms and counteract complex functional decline in aging. In processes such as learning and memory and exercise-dependent muscle remodeling, a relatively small number of molecules such as certain stimulus-responsive transcription factors and immediate early genes coordinate widespread changes in cellular physiology. Adaptive transcription can be targeted by various methods including pharmaceutical compounds and gene transfer technologies. Important problems for leveraging adaptive transcription programs for physiological enhancement include a better understanding of their dynamical organization, more precise methods to influence the underlying molecular components, and the integration of adaptive transcription into multi-scale physiological enhancement concepts.
Timing of post-orogenic silicic volcanism in the eastern part of the European Variscides: constraints from SHRIMP U–Pb zircon study of the Permo-Carboniferous Góry Suche Rhyolitic Tuffs (the Intra-Sudetic Basin)
Authors: Awdankiewicz Marek , Pańczyk Magdalena , Ploch Izabela , Raczyński Paweł , Awdankiewicz Honorata , Górecka-Nowak Anna , Pawlak Wojciech , Peryt Tadeusz 
Published: November 2024

Abstract
The Góry Suche Rhyolitic Tuffs in the Intra-Sudetic Basin, in the eastern part of the Variscan Belt of Europe, represent a voluminous (ca. 100 km3), possibly caldera-related, ignimbrite-dominated complex and the Łomnica Rhyolites are associated, post-ignimbrite sills. Zircon separates from nine samples were dated using the U–Pb SHRIMP method. Well-defined concordia ages were determined in four ignimbrite samples (300.5 ± 2.0, 300.5 ± 1.4, 298.0 ± 1.6 and 297.2 ± 0.9 Ma) and in two rhyolite samples (298.4 ± 1.5 and 292.6 ± 1.9 Ma). Clustering of the ignimbrite sample ages between 300.5 ± 2.0 and 297.2 ± 0.9 Ma and geological evidence indicate the eruption and deposition of the tuffs close to the Carboniferous/Permian boundary, in a geologically rapid event at approximately 299 Ma. Zircon assemblages in three tuff specimens are strongly dominated by xenocrysts of various Palaeozoic and Precambrian ages that were incorporated during the eruption through the basin fill. The emplacement of the tuffs was followed (and partly overlapped?) by the emplacement of the Łomnica Rhyolites as sills in two episodes in the early Permian. The Góry Suche Rhyolitic Tuffs may be a few million years older than assumed so far, and this, as well as rather imprecise biostratigraphic constraints from the host sedimentary rocks, suggest a need for revision of the existing lithostratigraphic and evolutionary schemes for the Permo-Carboniferous of the Intra-Sudetic Basin. The studied tuffs and rhyolites together with coeval granitic plutons in vicinity can be linked to the onset of post-Carboniferous lithospheric thinning in Central Europe.

Graphical abstract
Altered serum metabolome is associated with disease activity and immune responses in rheumatoid arthritis
Authors: Cai Xuanlin , Jin Jiayang , Ye Hua , Xiang Xiaohong , Luo Li , Li Jing 
Published: November 2024

AbstractRheumatoid arthritis (RA) is widespread globally, with the emergence of metabolites derived from both the host and microbes playing a pivotal role in its pathogenesis. This study aims to elucidate the relationships between serum metabolites and the immunological and clinical features of RA. Serum samples were collected from 35 RA patients and 37 healthy controls (HC). Metabolite profiling was performed using gas chromatography-mass spectrometry (GC/MS). Principal component analysis revealed a significant distinction between the RA and HC cohorts. Employing univariate statistical analysis, we identified 36 differential metabolites. Among these, 9 metabolites, including galactose and glucose, were found to be enriched, while the remaining metabolites, such as citric acid, fumaric acid, and inosine, were depleted in RA. These diverse metabolites encompassed various metabolic processes, including the biosynthesis of fatty acids, amino acids, and glucose. The enrichment of glucose and galactose in RA exhibited a substantial correlation with elevated IgG levels, as determined through correlation analysis. Conversely, the depletion of citric acid was correlated with elevated levels of C3 and CRP. Methionine, which also declined in RA patients, displayed a negative correlation with ESR. Furthermore, galactose and glucose exhibited significant positive correlations with naïve B cells, while the decreased eicosanoic acid level in RA was significantly associated with an increase in natural killer cells. Our findings suggest that the altered serum metabolite profile in RA is closely linked to disease severity and the dysregulated immune responses observed in RA patients.

Key Points

• Identified nine metabolites with upregulated expression and twenty-seven metabolites with downregulated expression.• Established a correlation between alterations in serum metabolite levels and inflammatory markers in RA patients.• Discovered a significant association between changes in serum metabolites and immune cell profiles in RA patients.
Frame-based stereotactic biopsies of brainstem lesions – Monocentric comparison of the transfrontal and the suboccipital-transcerebellar approach over a 16-year period
Authors: Kaes Manuel , Neumann Jan-Oliver , Beynon Christopher , Naser Paul V. , Kiening Karl , Krieg Sandro M. , Jakobs Martin 
Published: November 2024

AbstractBoth the transfrontal and the suboccipital-transcerebellar approach are frequently used trajectories for frame-based stereotactic biopsies of brainstem lesions. Nevertheless, it remains unclear which approach is more favorable in terms of complications, diagnostic success and outcome, especially considering the location of the lesion within the brainstem. This study compared the safety and diagnostic yield of these two approaches. Furthermore, a brainstem zone model was created to answer the question, whether there is a favorable approach depending on the location of the lesion in the brainstem. A retrospective analysis of 84 consecutive cases of frame-based stereotactic biopsies for brainstem lesions via either transfrontal or suboccipital-transcerebellar approaches over a 16-year period was performed. Clinical and surgical data regarding trajectories, histopathology, complications and outcome was collected. The brainstem was divided in anatomical zones to compare the use of the two approaches depending on the location of the lesions. A total of n = 84 cases of stereotactic biopsies for brainstem lesions were performed. In 36 cases the suboccipital-transcerebellar approach was used, while in 48 cases surgery was performed via the transfrontal approach. The patient’s demographic data were comparable between the two approaches. Overall diagnostic yield was 90.5% (93.8% transfrontal vs. 86.1% suboccipital, p = 0.21, Risk Difference (RD) 0.077, CI [-0.0550, 0.2090]). Complications occurred in 11 cases (total complication rate: 13.1%; 12.5% transfrontal vs. 13.9% suboccipital, p = 0.55, RD 0.014, CI [-0.1607, 0.1327]). The brainstem model showed a more frequent use of the suboccipital approach in lesions of the dorsal pons. The transfrontal approach was used more frequently in mesencephalic targets. No significant differences in terms of complications and diagnostic yield were observed, even though complications in medullary lesions appeared higher using the transfrontal approach. This study showed, that if the approaches are used for their intended target locations there are no significant differences between the transfrontal and the suboccipital-transcerebellar approach for frame-based stereotactic biopsies of brainstem lesions in terms of diagnostic yield and safety. Therefore, our data suggests that both approaches should be considered for stereotactic biopsy of brainstem lesions.
Black Body Cavity Apparatus for Measuring the Emissivity of Nickel-Titanium-Based Shape-Memory Alloys and Other Metals
Authors: Javed Muhammad Ali , Maaß Burkhard , Zipplies Daniel , Richter Markus 
Published: November 2024

AbstractNickel-titanium (NiTi)-based shape-memory alloys (SMAs) have various applications in biomedicine, actuators, aerospace technologies, and elastocaloric devices, due to their shape-memory and super-elastic effects. These effects are induced in SMAs by a reversible martensitic phase transformation. This transformation can be achieved by applying stress or temperature differences. It is extremely difficult to measure the temperature of NiTi elements with contact thermometers because they disturb the phase transformation phenomenon. An alternative approach is contactless infrared thermography for which accurate emissivity data are mandatory. To determine the temperature distribution in NiTi components with an infrared camera, a newly constructed apparatus is presented to measure the emissivity of metals. For this purpose, a state-of-the-art infrared camera was employed to analyze the emissivity behavior with temperature, especially during the phase transformation. The emissivity of the NiTi samples was systematically studied by comparing them with a reference-quality black body cavity (BBC) having an emissivity better than 0.995. Calibration measurements revealed that the maximum deviation of the BBC temperature measured with the infrared camera was only 0.15% (0.45 K) from its temperature measured with the built-in contact thermometers. The apparatus was validated by measuring the emissivity of a polished aluminum sample and found to be in good agreement with literature data, particularly for temperatures above 340 K. Finally, the emissivity of two rough and one polished NiTi samples was measured covering the temperature range from 313 K to 423 K with an expanded uncertainty of about 0.02 ($$k=2$$

k
=
2

). The studied NiTi samples have an atomic percent composition of $$\hbox {Ni}_{42.5}$$

Ni

42.5

$$\hbox {Ti}_{49.9}$$

Ti

49.9

$$\hbox {Cu}_{7.5}$$

Cu

7.5

$$\hbox {Cr}_{0.1}$$

Cr

0.1

. We observed that the emissivity of NiTi varies between 0.17 and 0.31 depending on temperature. As the temperature rises, the emissivity increases rapidly during the phase transformation, and it decreases gradually beyond the austenite finish temperature. In addition, the emissivity of NiTi depends on the microstructure of the martensite and austenite phases and the surface roughness of the samples.
Sleep Problems in Children with ADHD: Associations with Internalizing Symptoms and Physical Activity
Authors: Liang Xiao , Zhao Mengping , Su Li , Haegele Justin A. , Xu Richard H. , Li Jiayue , Guo Jinxian , Tse Andy Choi-Yeung , Li Shirley X. , Shum David H. K. 
Published: November 2024

AbstractChildren with attention deficit hyperactivity disorder (ADHD) experience high rates of sleep problems and are at increased risk for developing internalizing problems. This study aimed to examine the association of sleep problems and physical activity with internalizing symptoms in children with ADHD. This cross-sectional study included 188 children with ADHD (M age = 8.60 ± 1.38, 78.7% boys). Self-reported questionnaires were used to assess sleep problems (Pittsburgh Sleep Quality Index [PSQI]) and internalizing symptoms (Depression Anxiety Stress Scale 21 [DASS 21]). The presence of sleep problems was defined as a PSQI score > 5. Physical activity was recorded by an ActiGraph GT9X Link accelerometer for 7 consecutive days. In total, 111 children with ADHD presented with sleep problems (59%). Compared with their counterparts without sleep problems, children with sleep problems spent less time in daily moderator-to-vigorous physical activity (MVPA) (F = 15.35, η2 = .079), had a lower proportion of meeting the WHO-recommended 60 min of daily MVPA guideline (F = 9.57, η2 = .050), and showed more internalizing symptoms: depression (F = 10.09, η2 = .053), anxiety (F = 15.84, η2 = .081), and stress (F = 6.98, η2 = .037). BMI, daytime dysfunction of PSQI, and MVPA guideline attainment were significantly associated with internalizing symptoms in children with ADHD. Daytime dysfunction of PSQI is associated with more severe internalizing symptoms, and MVPA guideline attainment may reduce the likelihood of developing depression and anxiety in children with ADHD. Future studies are needed to examine the long-term effects of sleep on internalizing symptoms and the effects of PA-based interventions on sleep and internalizing symptoms in children with ADHD, respectively.
Housing Australian Children: A Snapshot of Health Inequities in the First 2000 Days
Authors: Li Yuxi , Singh Ankur , Bentley Rebecca 
Published: November 2024

AbstractHousing is a critical social determinant of children’s health. While individual pathways between housing and health are well evidenced, there has been less attention on the co-occurrence of housing disadvantages. We aim to identify typologies of children’s housing disadvantage and describe the health inequities they generate. A cross-sectional latent class analysis (LCA) was conducted on 4355 Australian children aged 4 to 5 years who participated in the Longitudinal Study of Australian Children. Nine binary indicators—dwelling tenure, external condition, affordability, stability, crowding, cleanliness, fuel poverty, and noise exposure—were used to generate latent housing typologies. Generalized linear models with robust standard errors described disparities in quality of life, injury, disability, and health service use across these housing typologies. Four distinct housing typologies were identified in this cohort: “good condition, affordable, and secure” (60%); “insecure” (11%); “crowded” (24%); and “unsuitable” (5%). Unsuitable housing, characterized by crowding, poor external conditions, and noise exposure, was more likely to be occupied by single-parent families, low-income households, and be headed by parents with low levels of education. Children in unsuitable housing lagged on quality of life indicators at preschool age (e.g., by 8.0 points on emotional functioning, 95% CI − 10.6, − 5.5), and underutilized primary healthcare services (e.g., prevalence ratio 0.76 for GP services, 95% CI 0.67, 0.87), compared to children in good quality housing. This finding supports the case for early intervention strategies that account for children’s housing circumstances.
Tailoring the Electrochemical Properties of ZnS Electrodes via Cobalt Doping for Improved Supercapacitor Application
Authors: Tom Emmanuel , Velluva Abhijai , Joseph Anit , Thomas Tiju , Sha Mizaj Shabil , Jithin P. V , Thomas Deepu , Sadasivuni Kishor Kumar , Kurian Joji 
Published: November 2024

AbstractFor practical uses, there has been a lot of interest in simple, inexpensive, and efficient synthesis of materials for supercapacitor applications. Pure and cobalt-doped zinc sulfide (Co-doped ZnS) powder samples were synthesized in this study using a straightforward co-precipitation process, and their electrochemical performance was examined. It was observed that, at a scan rate of 10 mV s−1, pure ZnS has a specific capacitance of only 460.7 F g−1; however, the Co-doping in ZnS increases it to 947.8 F g−1 for the 5% Co-doped sample, Co (0.05): ZnS. The results suggest that Co-doping in ZnS increases the kinetics and rate of redox processes. The increase in electrochemical active sites brought about by integrating Co into ZnS increases the surface area and results in the sample's capacity for storage. The encouraging findings increase the likelihood of elemental doping with other transition metal elements to increase the energy storage capability of earth-abundant ZnS samples.
Seasonal and Spatial Variability of Absorption Properties in Cartagena Bay’s Complex Waters
Authors: Eljaiek-Urzola Monica , Betancur-Turizo Stella Patricia , de Carvalho Lino Augusto Sander , Quiñones-Bolaños Edgar 
Published: November 2024

AbstractCharacterizing inherent optical properties (IOPs) of water constituents is crucial for remote sensing applications. Remote sensing in Cartagena Bay is particularly challenging due to significant variations in constituent concentrations caused by the seasonal and annual variability of discharges from the Canal del Dique. This article presents the variability in absorption coefficients of phytoplankton, chromophoric dissolved organic matter (aCDOM), and non-algal particles (aNAP) in Cartagena Bay. Absorption coefficients were measured in the laboratory across multiple monitoring campaigns, with seasonal analyses conducted to establish relationships between absorption properties and biogeochemical parameters such as chlorophyll-a, salinity, and turbidity. Results indicate that at 440 nm, aCDOM and aNAP primarily dominate absorption during the rainy season, while aNAP dominates during the dry season. This variation is influenced by inflows from the Canal del Dique. Lower CDOM absorption in 440 nm (aCDOM440), and higher CDOM absorption slope (SCDOM275–295) and higher salinity values were observed during the dry season, which is consistent with the reduced fluvial influx. Spatial variability shows that higher CDOM values prevail in the river plume area during both seasons, with particularly higher values in the rainy season. Median values of aNAP were similar in both seasons, with a strong relationship found between all aNAP data and turbidity (rp = 0.785). Compared to other estuaries, Cartagena Bay exhibits optical characteristics typical of a coastal water body subjected to river discharges, including the elevated turbidity and the high dissolved organic matter influenced by significant inflow from the Canal del Dique. These features highlight the bay’s dynamic interactions with terrestrial inputs. This study provides invaluable information on the optical characteristics of Cartagena Bay, which is crucial for improving the accuracy and effectiveness of remote sensing models for optically active parameters such as turbidity, suspended solids, CDOM, and chlorophyll-a.
Statistical study of mechanical responses of ordinary refractory ceramics under cold crushing condition with discrete element modelling
Authors: Du Wei-liang , Jin Sheng-li 
Published: November 2024

AbstractOrdinary refractory ceramics are multi-phase materials, and their inhomogeneous microstructures induce the scatter of properties. The definition of a reasonable number of samples is important to obtain representative results from experiments and simulations, and this reasonable number might be property or microstructure relevant. Stochastic discrete element (DE) simulations of cold crushing tests with homogeneous interface properties were performed. Three minimum DE size ranges were used to represent matrix variation at different levels. Statistical methods, i.e., Kolmogorov–Smirnov (K–S) test, t-test, and correlation analysis, were utilized to study the influences of minimal number of samples on mechanical properties and crack density. It revealed that a relatively small number of samples are sufficient to obtain representative cold crushing strength (CCS) and Young’s modulus, whilst a large number of samples are favourable when the fracture energy and crack density under cold crushing conditions are of interest. The analysis also showed that the fracture energy under cold crushing condition generally correlates positively with CCS, and the static Young’s moduli determined from the stress–piston displacement curves with different definitions are divergent, caused by contact compliance and premature cracking. The data from the stress–strain curves recorded directly on the sample are required for the accurate static Young’s modulus calculation.