bluuebunny/crossref_metadata_2025_split huggingface dataset:
Anemia in patients ten years after bariatric surgery
Authors: Karlsson Mimmi , Ottosson Johan , Clarkson Spencer , Sjöberg Klas 
Published: November 2024

Abstract
Background
More than 10% of the global population has a BMI above 35. Bariatric surgery is an efficient way to treat this condition. Unfortunately, there is a risk of nutritional deficiencies. The number of studies after a longer time span is scarce. The aim of this study was to determine the occurrence of anaemia five and ten years after bariatric surgery and how it was related to substitution therapy.

Patients and methods
Registry data from individuals having primary bariatric surgery in the Scandinavian Obesity Surgery Registry (SOReg) from 2007 to 2022 and with a follow-up at five or ten years was retrieved. Demographic data including weight, as well as method of surgery, Hb levels, supplementation, PPI use and stomal ulcerations were recorded.

Results
In total, 39,992 individuals (mean age 41 years, range 18–74, 77% women) could be included. The majority, 78%, had undergone laparoscopic Roux-en-Y gastric bypass. After five years, 2838/13,944 women (20.3%) and 456/4049 men (11.2%) had anaemia. After ten years, 644/3400 women (18.9%) and 178/947 men (18.8%) had anaemia. The use of oral iron increased from 40 to 45%, and the need for parenteral iron intake increased from 5 to 11%.

Conclusions
Anaemia is a significant but manageable condition five and ten years after bariatric surgery. Despite the prescription of oral iron supplements to 45% ten years after surgery, the Hb levels could still not be fully restored. Consequently, the importance of follow-up visits and continuous supplementation is emphasised.
Measured air quality impacts after teaching parents about cooking ventilation with a video: a pilot study
Authors: Holm Stephanie M. , Singer Brett C. , Kang Dufour Mi-Suk , Delp Woody , Nolan James E. S. , Bueno de Mesquita P. Jacob , Ward Bailey , Williamson Yahna , Le O’Philia , Russell Marion L. , Harley Kim G. , Balmes John R. 
Published: November 2024

Abstract
Background
Cooking-related emissions contribute to air pollutants in the home and may influence children’s health outcomes.

Objective
In this pilot study, we investigate the effects of a cooking ventilation intervention in homes with gas stoves, including a video-based educational intervention and range hood replacement (when needed) in children’s homes.

Methods
This was a pilot (n = 14), before-after trial (clinicaltrials.gov #NCT04464720) in homes in the San Francisco Bay Area that had a school-aged child, a gas stove, and either a venting range hood or over-the-range microwave/hood. Cooking events, ventilation use, and indoor air pollution were measured in homes for 2–4 weeks, and children completed respiratory assessments. Midway, families received this intervention: (1) education about the hazards of cooking-related pollutants and benefits of both switching to back burners and using the range hood whenever cooking and (2) ensuring the range hood met airflow and sound performance standards. The educational intervention was delivered via a video developed in conjunction with local youth.

Results
We found substantially increased use of back burners and slight increases in range hood use during cooking after intervening. Even though there was no change in cooking frequency or duration, these behavior changes resulted in decreases in nitrogen dioxide (NO2), including significant decreases in the total integrated concentration of NO2 over all cooking events from 1230 ppb*min (IQR 336, 7861) to 756 (IQR 84.0, 4210; p < 0.05) and NO2 collected on samplers over the entire pre- and post-intervention intervals from 10.4 ppb (IQR 3.5, 47.5) to 9.4 (IQR 3.0, 36.1; p < 0.005). There were smaller changes in PM2.5, and no changes were seen in respiratory outcomes.

Impact
This pilot before-after trial evaluated the use of a four-minute educational video to improve cooking ventilation in homes with gas stoves and one or more school-aged children. Participant behavior changed after watching the video, and there were decreases in indoor air pollutant concentrations in the home, some of which were significant. This brief video is now publicly available in English and Spanish (wspehsu.ucsf.edu/projects/indoor-air-quality), and this provides suggestive evidence of the utility of this simple intervention, which could be particularly beneficial for households that have children with asthma.
Surgically managed traumatic spinal cord injury in Singapore: a descriptive study across two level one trauma centres
Authors: Tan Yong Yao , Jiang Lei , Chew Zhihong , Yang Zhen , Rajaram Rajashulakshana , Tun Mon Hnin , Prasanna Kappaganthu Venkateshi , Chen Li Tat John , Soh Reuben Chee Cheong , Kumar Shree Dinesh 
Published: November 2024

Abstract
Study design
Case Series

Objectives
To provide an updated understanding of the incidence of surgically managed Traumatic Spinal Cord Injury (TSCI) in Singapore and to identify factors affecting discharge disposition.

Setting
Patients were identified from two level one trauma centres in Singapore.

Methods
All patients who underwent surgical management for acute TSCI between January 2020 to December 2021 were included. Demographics, injury details, peri-operative condition, hospital length of stay (LOS) and discharge disposition were evaluated. The overall characteristics of TSCI were summarised using descriptive statistics. The difference between discharge destinations was compared using chi-square test or t test. Variables with p values < 0.3 were selected for multivariable analysis.

Results
Forty-four patients were included. Median age was 65. The most common SCI aetiology was fall from standing height or less (54.6%). Accidents involving personal mobility devices, bicycles and motor vehicles made up the next largest group (20.5%). Thirty-nine cases (88.6%) involved the cervical region. There were two cases of inpatient mortality. Twenty-one patients (50%) were discharged home, 21 (50%) were discharged to a community hospital (CH) or nursing home (NH). The median LOS in an acute hospital was 41 days. Multivariable logistic regression analysis revealed that functional independence measure (FIM) score on discharge was an independent factor that influenced discharge disposition (p = 0.037).

Conclusion
A public health focus on falls prevention, the development of geriatric spinal rehabilitation programs, and the consideration of a national registry are recommended for the comprehensive management of TSCI in Singapore.
Inhibition of VDAC1 oligomerization blocks cysteine deprivation-induced ferroptosis via mitochondrial ROS suppression
Authors: Jang Se-Kyeong , Ahn Se Hee , Kim Gyeongmi , Kim Selim , Hong Jungil , Park Ki Soo , Park In-Chul , Jin Hyeon-Ok 
Published: November 2024

AbstractFerroptosis, a regulated form of cell death dependent on reactive oxygen species (ROS), is characterized by iron accumulation and lethal lipid peroxidation. Mitochondria serve as the primary source of ROS and thus play a crucial role in ferroptosis initiation and execution. This study highlights the role of mitochondrial ROS and the significance of voltage-dependent anion channel 1 (VDAC1) oligomerization in ferroptosis induced by cysteine deprivation or ferroptosis-inducer RSL3. Our results demonstrate that the mitochondria-targeted antioxidants MitoQ and MitoT effectively block ferroptosis induction and that dysfunction of complex III of the mitochondrial electron transport chain contributes to ferroptosis induction. Pharmacological inhibitors that target VDAC1 oligomerization have emerged as potent suppressors of ferroptosis that reduce mitochondrial ROS production. These findings underscore the critical involvement of mitochondrial ROS production via complex III of the electron transport chain and the essential role of VDAC1 oligomerization in ferroptosis induced by cysteine deprivation or RSL3. This study deepens our understanding of the intricate molecular networks governing ferroptosis and provides insights into the development of novel therapeutic strategies targeting dysregulated cell death pathways.
Reconstructing the regulatory programs underlying the phenotypic plasticity of neural cancers
Authors: Larsson Ida , Held Felix , Popova Gergana , Koc Alper , Kundu Soumi , Jörnsten Rebecka , Nelander Sven 
Published: November 2024

AbstractNervous system cancers exhibit diverse transcriptional cell states influenced by normal development, injury response, and growth. However, the understanding of these states’ regulation and pharmacological relevance remains limited. Here we present “single-cell regulatory-driven clustering” (scregclust), a method that reconstructs cellular regulatory programs from extensive collections of single-cell RNA sequencing (scRNA-seq) data from both tumors and developing tissues. The algorithm efficiently divides target genes into modules, predicting key transcription factors and kinases with minimal computational time. Applying this method to adult and childhood brain cancers, we identify critical regulators and suggest interventions that could improve temozolomide treatment in glioblastoma. Additionally, our integrative analysis reveals a meta-module regulated by SPI1 and IRF8 linked to an immune-mediated mesenchymal-like state. Finally, scregclust’s flexibility is demonstrated across 15 tumor types, uncovering both pan-cancer and specific regulators. The algorithm is provided as an easy-to-use R package that facilitates the exploration of regulatory programs underlying cell plasticity.
A unicellular cyanobacterium relies on sodium energetics to fix N2
Authors: Tang Si , Cheng Xueyu , Liu Yaqing , Liu Lu , Liu Dai , Yan Qi , Zhu Jianming , Zhou Jin , Jiang Yuyang , Hammerschmidt Katrin , Cai Zhonghua 
Published: November 2024

AbstractDiazotrophic cyanobacteria can fix nitrogen gas (N2) but are usually scarce in nitrogen-limited coastal waters, which poses an apparent ecological paradox. One hypothesis is that high salinities (> 10 g/L NaCl) may inhibit cyanobacterial N2 fixation. However, here we show that N2 fixation in a unicellular coastal cyanobacterium exclusively depends on sodium ions and is inhibited at low NaCl concentrations (< 4 g/L). In the absence of Na+, cells of Cyanothece sp. ATCC 51142 (recently reclassified as Crocosphaera subtropica) upregulate the expression of nifHDK genes and synthesise a higher amount of nitrogenase, but do not fix N2 and do not grow. We find that the loss of N2-fixing ability in the absence of Na+ is due to insufficient ATP supply. Additional experiments suggest that N2 fixation in this organism is driven by sodium energetics and mixed-acid fermentation, rather than proton energetics and aerobic respiration, even though cells were cultured aerobically. Further work is needed to clarify the underlying mechanisms and whether our findings are relevant to other coastal cyanobacteria.
Thermal stability and coalescence dynamics of exsolved metal nanoparticles at charged perovskite surfaces
Authors: Weber Moritz L. , Jennings Dylan , Fearn Sarah , Cavallaro Andrea , Prochazka Michal , Gutsche Alexander , Heymann Lisa , Guo Jia , Yasin Liam , Cooper Samuel J. , Mayer Joachim , Rheinheimer Wolfgang , Dittmann Regina , Waser Rainer , Guillon Olivier , Lenser Christian , Skinner Stephen J. , Aguadero Ainara , Nemšák Slavomír , Gunkel Felix 
Published: November 2024

AbstractExsolution reactions enable the synthesis of oxide-supported metal nanoparticles, which are desirable as catalysts in green energy conversion technologies. It is crucial to precisely tailor the nanoparticle characteristics to optimize the catalysts’ functionality, and to maintain the catalytic performance under operation conditions. We use chemical (co)-doping to modify the defect chemistry of exsolution-active perovskite oxides and examine its influence on the mass transfer kinetics of Ni dopants towards the oxide surface and on the subsequent coalescence behavior of the exsolved nanoparticles during a continuous thermal reduction treatment. Nanoparticles that exsolve at the surface of the acceptor-type fast-oxygen-ion-conductor SrTi0.95Ni0.05O3−δ (STNi) show a high surface mobility leading to a very low thermal stability compared to nanoparticles that exsolve at the surface of donor-type SrTi0.9Nb0.05Ni0.05O3−δ (STNNi). Our analysis indicates that the low thermal stability of exsolved nanoparticles at the acceptor-doped perovskite surface is linked to a high oxygen vacancy concentration at the nanoparticle-oxide interface. For catalysts that require fast oxygen exchange kinetics, exsolution synthesis routes in dry hydrogen conditions may hence lead to accelerated degradation, while humid reaction conditions may mitigate this failure mechanism.
Estimating countries’ additional carbon accountability for closing the mitigation gap based on past and future emissions
Authors: Hahn Thomas , Morfeldt Johannes , Höglund Robert , Karlsson Mikael , Fetzer Ingo 
Published: November 2024

AbstractQuantifying fair national shares of the remaining global carbon budget has proven challenging. Here, we propose an indicator—additional carbon accountability—that quantifies countries’ responsibility for mitigation and CO2 removal in addition to achieving their own targets. Considering carbon debts since 1990 and future claims based on countries’ emission pathways, the indicator uses an equal cumulative per capita emissions approach to allocate accountability for closing the mitigation gap among countries with a positive total excessive carbon claim. The carbon budget is exceeded by 576 Gigatonnes of fossil CO2 when limiting warming below 1.5 °C (50% probability). Additional carbon accountability is highest for the United States and China, and highest per capita for the United Arab Emirates and Russia. Assumptions on carbon debts strongly impact the results for most countries. The ability to pay for this accountability is challenging for Iran, Kazakhstan and several BRICS+ members, in contrast to the G7 members.
Initiation of lumen formation from junctions via differential actomyosin contractility regulated by dynamic recruitment of Rasip1
Authors: Yin Jianmin , Schellinx Niels , Maggi Ludovico , Gundel Kathrin , Wiesner Cora , Kotini Maria Paraskevi , Lee Minkyoung , Phng Li-Kun , Belting Heinz-Georg , Affolter Markus 
Published: November 2024

AbstractDe novo lumen formation necessitates the precise segregation of junctional proteins from apical surfaces, yet the underlying mechanisms remain unclear. Using a zebrafish model, we develop a series of molecular reporters, photo-convertible and optogenetic tools to study the establishment of apical domains. Our study identifies Rasip1 as one of the earliest apical proteins recruited, which suppresses actomyosin contractility at junctional patches by inhibiting NMII, thereby allowing for the sustained outward flow of junctional complexes. Following the establishment of apical compartments, Rasip1 shuttles between junctions and the apical compartments in response to local high tension. Rasip1 confines Cdh5 to junctions by suppressing apical contractility. Conversely, the recruitment of Rasip1 to junctions is regulated by Heg1 and Krit1 to modulate contractility along junctions. Overall, de novo lumen formation and maintenance depend on the precise control of contractility within apical compartments and junctions, orchestrated by the dynamic recruitment of Rasip1.
Unified linear response theory of quantum electronic circuits
Authors: Peri L. , Benito M. , Ford C. J. B. , Gonzalez-Zalba M. F. 
Published: November 2024

AbstractModeling the electrical response of multi-level quantum systems at finite frequency has been typically performed in the context of two incomplete paradigms: (i) input-output theory, which is valid at any frequency but neglects dynamic losses, and (ii) semiclassical theory, which captures dynamic dissipation effects well but is only accurate at low frequencies. Here, we develop a unifying theory, valid for arbitrary frequencies, that captures both the small-signal quantum behavior and the non-unitary effects introduced by relaxation and dephasing. The theory allows a multi-level system to be described by a universal small-signal equivalent-circuit model, a resonant RLC circuit, whose topology only depends on the number of energy levels. We apply our model to a double-quantum-dot charge qubit and a Majorana qubit, showing the capability to continuously describe the systems from adiabatic to resonant and from coherent to incoherent, suggesting new and realistic experiments for improved quantum state readout. Our model will facilitate the design of hybrid quantum–classical circuits and the simulation of qubit control and quantum state readout.
An OpenStreetMap derived building classification dataset for the United States
Authors: F. de Arruda Henrique , Reia Sandro M. , Ruan Shiyang , Atwal Kuldip S. , Kavak Hamdi , Anderson Taylor , Pfoser Dieter 
Published: November 2024

AbstractBuilding classification is crucial for population estimation, traffic planning, urban planning, and emergency response applications. Although essential, such data is often not readily available. To alleviate this problem, this work presents a comprehensive dataset by providing residential/non-residential building classification covering the entire United States. We developed a dataset of building types based on building footprints and the available OpenStreetMap information. The dataset is validated using authoritative ground truth data for select counties in the U.S., which shows a high precision for non-residential building classification and a high recall for residential buildings. In addition to the building classifications, this dataset includes detailed information on the OpenStreetMap data used in the classification process. A major result of this work is the resulting dataset of classifying 67,705,475 buildings. We hope that this data is of value to the scientific community, including urban and transportation planners.
Hyperspectral imaging and deep learning for parasite detection in white fish under industrial conditions
Authors: Syed Shaheen , Ortega Samuel , Anderssen Kathryn E. , Nilsen Heidi A. , Heia Karsten 
Published: November 2024

AbstractParasites in fish muscle present a significant problem for the seafood industry in terms of both quality and health and safety, but the low contrast between parasites and fish tissue makes them exceedingly difficult to detect. The traditional method to identify nematodes requires removing fillets from the production line for manual inspection on candling tables. This technique is slow, labor intensive and typically only finds about half the parasites present. The seafood industry has struggled for decades to develop a method that can improve the detection rate while being performed in a rapid, non-invasive manner. In this study, a newly developed solution uses deep neural networks to simultaneously analyze the spatial and spectral information of hyperspectral imaging data. The resulting technology can be directly integrated into existing industrial processing lines to rapidly identify nematodes at detection rates (73%) better than conventional manual inspection (50%).
Conservation units and the origin of planted individuals of an endangered endemic species Lobelia boninensis in the Ogasawara Islands
Authors: Hata Chikashi , Endo Chiharu , Tanaka Hiroshi , Hiruma Miho , Kumamoto Maiko , Takenaka Izumi , Makino Takashi , Niinaka Kento , Suyama Yoshihisa , Hirota Shun K. , Yamasaki Michimasa , Isagi Yuji 
Published: November 2024

AbstractThe Ogasawara Islands, one of the UNESCO World Natural Heritage Site located about 1000 km south of Japan’s main island, harbor numerous endemic species, many of which are as endangered. One of the endemic plant species, Lobelia boninensis, found in the Mukojima, Chichijima, and Hahajima archipelagoes, is endangered due to predation. As part of conservation efforts, translocation is now underway, especially on Chichijima. However, we lack essential information, such as the genetic population structure, to develop appropriate translocation strategies for both wild and planted individuals. Here, we aimed to identify the conservation units and the origin of planted individuals by estimating the genetic population structure and phylogenetic relationships across all habitats of this species. We identified two distinct genetic clusters, indicating genetic differentiation between the northern and southern populations. The genetic population components detected at an isolated site on Chichijima showed a mixture of these distinct clusters, probably due to hybridization. The transplanted individuals in Chichijima were found to have originated from a population in Hahajima. These results suggest the presence of two distinct conservation units. Furthermore, the current translocation strategy poses a risk of genetic contamination between these units, highlighting the need for revised conservation management practices.
Striatal dopamine gene network moderates the effect of early adversity on the risk for adult psychiatric and cardiometabolic comorbidity
Authors: Barth Barbara , Arcego Danusa Mar , de Mendonça Filho Euclides José , de Lima Randriely Merscher Sobreira , Parent Carine , Dalmaz Carla , Portella André Krumel , Pokhvisneva Irina , Meaney Michael J. , Silveira Patricia Pelufo 
Published: November 2024

AbstractCardiometabolic and psychiatric disorders often co-exist and share common early life risk factors, such as low birth weight. However, the biological pathways linking early adversity to adult cardiometabolic/psychiatric comorbidity remain unknown. Dopamine (DA) neurotransmission in the striatum is sensitive to early adversity and influences the development of both cardiometabolic and psychiatric diseases. Here we show that a co-expression based polygenic score (ePGS) reflecting individual variations in the expression of the striatal dopamine transporter gene (SLC6A3) network significantly interacts with birth weight to predict psychiatric and cardiometabolic comorbidities in both adults (UK Biobank, N = 225,972) and adolescents (ALSPAC, N = 1188). Decreased birth weight is associated with an increased risk for psychiatric and cardiometabolic comorbidities, but the effect is dependent on a striatal SLC6A3 ePGS, that reflects individual variation in gene expression of genes coexpressed with the SLC6A3 gene in the striatum. Neuroanatomical analyses revealed that SNPs from the striatum SLC6A3 ePGS were significantly associated with prefrontal cortex gray matter density, suggesting a neuroanatomical basis for the link between early adversity and psychiatric and cardiometabolic comorbidity. Our study reveals that psychiatric and cardiometabolic diseases share common developmental pathways and underlying neurobiological mechanisms that includes dopamine signaling in the striatum.