bluuebunny/crossref_metadata_2025_split huggingface dataset:
High Pressure Metamorphism Caused by Fluid Induced Weakening of Deep Continental Crust
Authors: Jamtveit Bjørn , Moulas Evangelos , Andersen Torgeir B. , Austrheim Håkon , Corfu Fernando , Petley-Ragan Arianne , Schmalholz Stefan M. 
Published: November 2018

AbstractStudies of mineral equilibria in metamorphic rocks have given valuable insights into the tectonic processes operating at convergent plate margins during an orogeny. Geodynamic models simulating orogenesis and crustal thickening have been constrained by temperature and pressure estimates inferred from the mineral assemblages of the various lithologies involved along with age constrains from increasingly precise geochronological techniques. During such studies it is assumed that the pressure experienced by a given rock is uniquely related to its depth of burial. This assumption has been challenged by recent studies of high pressure (HP) and ultrahigh pressure (UHP) rocks. Here, we describe an example of Caledonian HP metamorphism from the Bergen Arcs in western Norway, and show that the associated formation of Caledonian eclogites at the expense of Proterozoic granulites was related to local pressure perturbations rather than burial, and that the HP metamorphism resulted from fluid-induced weakening of an initially dry and highly stressed lower crust when thrust upon the hyperextended margin of the Baltic shield.
Perioperative aspirin and long-term survival in patients undergoing coronary artery bypass graft
Authors: Ding Qian , Liu Hong , Zhang Zugui , Goldhammer Jordan , Yuen Eric , Li Zhongmin , Yao Linong , Young Nilas , Boyd Douglas , Weintraub William , Morris Rohinton , Sun Jianzhong 
Published: November 2018

AbstractThis study aimed to examine association between perioperative uses of aspirin and long-term survival in patients undergoing CABG. A retrospective cohort study was performed in 9,584 consecutive patients receiving cardiac surgery from three tertiary hospitals. Of all the patients, 4,132 patients undergoing CABG met inclusion criteria and were divided into four groups: with or without preoperative or postoperative aspirin respectively. 30-day postoperative and long-term mortality were compared with the use of propensity scores and inverse probability weighting adjustment to reduce the treatment-selection bias. The patients taking preoperative aspirin presented significantly more with comorbidities. However, the results of this study showed that preoperative aspirin (vs. no preoperative aspirin) was associated with significantly reduced the risk of 30-day mortality in the patients undergoing CABG. Further, the results of long-term mortality showed that the patients taking preoperative aspirin and postoperative aspirin (vs. not taking) were associated with significantly reduced the risk of 4-year mortality (14.8% vs. 18.1%, RR: 0.82, 95% CI: 0.75–0.89, P = 0.005; 10.7% vs. 16.2%, RR: 0.66, 95% CI: 0.50–0.82, P = 0.003). In conclusion, this cohort study showed that perioperative (before and after surgery) use of aspirin was associated with significant reduction in 30-day mortality without significant bleeding complications, also improved long-term survival in patients undergoing CABG.
Thidiazuron-induced somatic embryogenesis and changes of antioxidant properties in tissue cultures of half-high blueberry plants
Authors: Ghosh Amrita , Igamberdiev Abir U. , Debnath Samir C. 
Published: November 2018

AbstractAn efficient protocol of somatic embryogenesis (SE) has been developed for the first time in four half-high blueberry (Vaccinium corymbosumL. × V. angustifoliumAit.) cultivars. Thidiazuron (TDZ), a plant growth regulator with potential activities for shoot regeneration and shoot proliferation, was found most effective for somatic embryo formation when added to a nutrient medium at high concentration (9 µM). Although TDZ was also best for embryo germination at low concentration (2.3 µM), it was followed by zeatin at 4.6 µM for the same. Plantlets developed from SE were removed from the nutrient medium and transferred on a peat: perlite medium where 100% survival rate was acquired following the acclimatization process in a greenhouse. The concentrations of total phenolic and flavonoid contents were higher in greenhouse-grown conventionally cutting-propagated donor mother plants than those of respective SE plants for ‘St. Cloud’, ‘Patriot’ and ‘Northblue’ but not for ‘Chippewa’. The effect of propagation method and/or the older age of donor mother plants were clearly visible exclusively as the 15-year-old donor plants showed higher level of 2,2-diphenyl-1-picrylhydrazyl scavenging activity than the eight-weeks-old SE plants in all four cultivars.
An anti-clogging method for improving the performance and lifespan of blood plasma separation devices in real-time and continuous microfluidic systems
Authors: Kang Dong-Hyun , Kim Kyongtae , Kim Yong-Jun 
Published: November 2018

AbstractOn-chip blood plasma separators using microfluidic channels are typically developed as disposable devices for short-term use only because blood cells tend to clog the microchannels, limiting their application in real-time and continuous systems. In this study, we propose an anti-clogging method. We applied dielectrophoresis to prevent microchannel clogging in a plasma separator that can be used over long periods for real-time and continuous monitoring. Prior to applying the anti-clogging method, the blood plasma separator stopped working after 4 h. In contrast, by manipulating the separator with the new anti-clogging method at a voltage of 20 V, it continued working in a long-term experiment for 12 h without performance deterioration or an increase in cell loss. Two critical performance parameters of the manipulated separator, the purity efficiency and the plasma yield, were 97.23 ± 5.43% and 38.95 ± 9.34%, respectively, at 20 V after 15 min. Interestingly, the two performance parameters did not decrease during the long-term experiment. Hence, the blood plasma separator with the anti-clogging method is an interesting device for use in real-time and continuous blood plasma separation systems because of its consistent performance and improved lifespan.
Common solar wind drivers behind magnetic storm–magnetospheric substorm dependency
Authors: Runge Jakob , Balasis Georgios , Daglis Ioannis A. , Papadimitriou Constantinos , Donner Reik V. 
Published: November 2018

AbstractThe dynamical relationship between magnetic storms and magnetospheric substorms is one of the most controversial issues of contemporary space research. Here, we address this issue through a causal inference approach to two corresponding indices in conjunction with several relevant solar wind variables. We find that the vertical component of the interplanetary magnetic field is the strongest and common driver of both storms and substorms. Further, our results suggest, at least based on the analyzed indices, that there is no statistical evidence for a direct or indirect dependency between substorms and storms and their statistical association can be explained by the common solar drivers. Given the powerful statistical tests we performed (by simultaneously taking into account time series of indices and solar wind variables), a physical mechanism through which substorms directly or indirectly drive storms or vice versa is, therefore, unlikely.
Selective eye fixations on diagnostic face regions of dynamic emotional expressions: KDEF-dyn database
Authors: Calvo Manuel G. , Fernández-Martín Andrés , Gutiérrez-García Aida , Lundqvist Daniel 
Published: November 2018

AbstractPrior research using static facial stimuli (photographs) has identified diagnostic face regions (i.e., functional for recognition) of emotional expressions. In the current study, we aimed to determine attentional orienting, engagement, and time course of fixation on diagnostic regions. To this end, we assessed the eye movements of observers inspecting dynamic expressions that changed from a neutral to an emotional face. A new stimulus set (KDEF-dyn) was developed, which comprises 240 video-clips of 40 human models portraying six basic emotions (happy, sad, angry, fearful, disgusted, and surprised). For validation purposes, 72 observers categorized the expressions while gaze behavior was measured (probability of first fixation, entry time, gaze duration, and number of fixations). Specific visual scanpath profiles characterized each emotional expression: The eye region was looked at earlier and longer for angry and sad faces; the mouth region, for happy faces; and the nose/cheek region, for disgusted faces; the eye and the mouth regions attracted attention in a more balanced manner for surprise and fear. These profiles reflected enhanced selective attention to expression-specific diagnostic face regions. The KDEF-dyn stimuli and the validation data will be available to the scientific community as a useful tool for research on emotional facial expression processing.
Conversion from environmental filtering to randomness as assembly rule of ground beetle assemblages along an urbanization gradient
Authors: Magura Tibor , Lövei Gábor L. , Tóthmérész Béla 
Published: November 2018

AbstractUrbanization fragments, isolates or eliminates natural habitats, and changes the structure and composition of assemblages living in the remaining natural fragments. Knowing assembly rules is necessary to support and/or maintain biodiversity in urban habitats. We hypothesized that forest communities in rural sites are organized by environmental filtering, but this may be changed by urbanization, and in the suburban and urban forest fragments replaced by randomly organized assemblages, influenced by the colonization of species from the surrounding matrix. Evaluating simultaneously the functional and phylogenetic relationships of co-existing species, we showed that at the rural sites, co-existing ground beetle species were functionally and phylogenetically more similar than expected by chance, indicating that environmental filtering was the likely process structuring these communities. Contrary to this, in urban and suburban sites, the co-occurring species were functionally and phylogenetically not different from the null model, indicating randomly structured assemblages. According to our findings, changes in environmental and habitat characteristics accompanied by urbanization lead to assemblages of randomly colonized species from the surrounding matrix, threatening proper ecosystem functioning. To reassemble stochastically assembled species of urban and suburban fragments to structured, properly functioning communities, appropriate management strategies are needed which simultaneously consider recreational, economic and conservation criteria.
Electrical activation of degenerated photoreceptors in blind mouse retina elicited network-mediated responses in different types of ganglion cells
Authors: Haq Wadood , Dietter Johannes , Zrenner Eberhart 
Published: November 2018

AbstractElectrical (e-) stimulation is explored in schemes to rescue the vision of blind people, e.g. those affected by Retinitis Pigmentosa (RP). We e-activated subretinally the surviving degenerated photoreceptors (d-Phrs) of the rd1 mouse (RP model) and evoked visual responses in the blind retina. The e-stimulation was applied with a single platinum/iridium electrode. The d-Phrs (calcium-imaging) and ganglion cells (GC) activity (MEA-recording) were recorded in simultaneous multilayer recordings. The findings of this study confirm that the d-Phrs responded to e-stimulation and modulated the retinal network-activity. The application of blockers revealed that the synaptic interactions were dependent on voltage-gated calcium channels and mediated by the transmitters glutamate and GABA. Moreover, the gap junctions coupled networks promoted the lateral-spread of the e-evoked activity in the outer (~60 µm) and inner (~120 µm) retina. The activated GCs were identified as subtypes of the ON, OFF and ON-OFF classes. In conclusion, d-Phrs are the ideal interface partners for implants to elicit enhanced visual responses at higher temporal and spatial resolution. Furthermore, the retina’s intact circuity at the onset of complete blindness makes it a tempting target when considering the implantation of implants into young patients to provide a seamless transition from blinding to chip-aided vision.
Comparative genomic and functional analyses of four sequenced Bacillus cereus genomes reveal conservation of genes relevant to plant-growth-promoting traits
Authors: Zeng Qingchao , Xie Jianbo , Li Yan , Gao Tantan , Xu Cheng , Wang Qi 
Published: November 2018

AbstractSomeBacillusstrains function as predominant plant-growth-promoting rhizobacteria.Bacillus cereus905 is a rod-shaped Gram-positive bacterium isolated from wheat rhizosphere and is a rhizobacterium that exhibits significant plant-growth-promoting effects. Species belonging to the genusBacillusare observed in numerous different habitats. Several papers onB.cereusare related to pathogens that causes food-borne illness and industrial applications. However, genomic analysis of plant-associatedB.cereushas yet to be reported. Here, we conducted a genomic analysis comparing strain 905 with three otherB.cereusstrains and investigate the genomic characteristics and evolution traits of the species in different niches. The genome sizes of fourB.cereusstrains range from 5.38 M to 6.40 M, and the number of protein-coding genes varies in the four strains. Comparisons of the fourB.cereusstrains reveal 3,998 core genes. The function of strain-specific genes are related to carbohydrate, amino acid and coenzyme metabolism and transcription. Analysis of single nucleotide polymorphisms (SNPs) indicates local diversification of the four strains. SNPs are unevenly distributed throughout the four genomes, and function interpretation of regions with high SNP density coincides with the function of strain-specific genes. Detailed analysis indicates that certain SNPs contribute to the formation of strain-specific genes. By contrast, genes related to plant-growth-promoting traits are highly conserved. This study shows the genomic differences between four strains from different niches and provides an in-depth understanding of the genome architecture of these species, thus facilitating genetic engineering and agricultural applications in the future.
Effects of spatial consistency and individual difference on touch-induced visual suppression effect
Authors: Hidaka Souta , Suzuishi Yosuke , Ide Masakazu , Wada Makoto 
Published: November 2018

AbstractCrossmodal studies have reported not only facilitatory but also inhibitory perceptual interactions. For instance, tactile stimulation to the index finger of a hand leads to the degradation of visual discrimination performance (touch-induced visual suppression, TIVS). It has been suggested that the magnitude of TIVS depends on the spatial congruency of visuo-tactile stimuli and on individual differences in task performance. We performed a detailed investigation of the effects of spatial consistency and individual differences on the occurrence of TIVS. The visual target and tactile stimulus were presented at co-localized, ipsilateral but not co-localized, or contralateral positions. The degree of autistic traits has been reported to be well variable among the general population and to reflect differences in sensory processing. Therefore, we assessed the magnitude of autistic traits using the autism-spectrum quotient (AQ) as an index of individual differences. TIVS occurred particularly at the ipsilateral but not co-localized position. In contrast, the magnitude of the TIVS was positively correlated with the AQ score when the stimuli were presented at the co-localized position. These findings suggest that the occurrence of TIVS can be modulated both by the spatial relationship between the visual and tactile stimuli and by individual differences in autistic traits.
Individual variability in diving, movement and activity patterns of adult bearded seals in Svalbard, Norway
Authors: Hamilton Charmain D. , Kovacs Kit M. , Lydersen Christian 
Published: November 2018

AbstractBearded seals are one of the least studied Arctic marine mammals, despite their circumpolar distribution and importance as a resource to Inuit communities. In this study, adult bearded seals (Erignathus barbatus) were equipped with GPS-Argos-CTD-SRDLs in Svalbard, Norway (2011–2012, n = 7) to document their diving, activity and movement patterns in a region where their habitat is changing rapidly. Five seals transmitted for > 8 months, sending 21,738 GPS-positions and 17,866 dives between July and April. The seals spent little time hauled out (≤ 5%). Diving, which occupied 74 ± 3% of their time, was generally shallow (24 ± 7 m, max: 391 m) and of short duration (6.6 ± 1.5 min, max: 24 min) with deeper, longer dives in winter/spring compared to summer. All seals occupied shallow, coastal areas and relatively small 50% home ranges (10–32 km2). However, individuals exhibited high degrees of specialization in their habitat use and diving behaviour, differing markedly with respect to proportions of benthic vs pelagic dives (range: 51–95% benthic dives), distance to glacier fronts (range: 3–22 km) and in the time spent at the bottom of dives (range: 43–77%). Having specialized strategies within a generalist population may help bearded seals adapt in a rapidly changing Arctic ecosystem.
Obesity shows preserved plasma proteome in large independent clinical cohorts
Authors: Cominetti Ornella , Núñez Galindo Antonio , Corthésy John , Valsesia Armand , Irincheeva Irina , Kussmann Martin , Saris Wim H. M. , Astrup Arne , McPherson Ruth , Harper Mary-Ellen , Dent Robert , Hager Jörg , Dayon Loïc 
Published: November 2018

AbstractHolistic human proteome maps are expected to complement comprehensive profile assessment of health and disease phenotypes. However, methodologies to analyze proteomes in human tissue or body fluid samples at relevant scale and performance are still limited in clinical research. Their deployment and demonstration in large enough human populations are even sparser. In the present study, we have characterized and compared the plasma proteomes of two large independent cohorts of obese and overweight individuals using shotgun mass spectrometry (MS)-based proteomics. Herein, we showed, in both populations from different continents of about 500 individuals each, the concordance of plasma protein MS measurements in terms of variability, gender-specificity, and age-relationship. Additionally, we replicated several known and new associations between proteins, clinical and molecular variables, such as insulin and glucose concentrations. In conclusion, our MS-based analyses of plasma samples from independent human cohorts proved the practical feasibility and efficiency of a large and unified discovery/replication approach in proteomics, which was also recently coined “rectangular” design.
Robustness of elastic properties in polymer nanocomposite films examined over the full volume fraction range
Authors: Alonso-Redondo E. , Belliard L. , Rolle K. , Graczykowski B. , Tremel W. , Djafari-Rouhani B. , Fytas G. 
Published: November 2018

AbstractPolymers with nanoparticle inclusions are attractive materials because physical properties can be tuned by varying size and volume fraction range. However, elastic behavior can degrade at higher inclusion fractions when particle-particle contacts become important, and sophisticated measurement techniques are required to study this crossover. Here, we report on the mechanical properties of materials with BaTiO3 nanoparticles (diameters < 10 nm) in a polymer (poly(methyl methacrylate)) matrix, deposited as films in different thickness ranges. Two well-known techniques, time and frequency domain Brillouin light scattering, were employed to probe the composition dependence of their elastic modulus. The time domain experiment revealed the biphasic state of the system at the highest particle volume fraction, whereas frequency domain Brillouin scattering provided comprehensive information on ancillary variables such as refractive index and directionality. Both techniques prove complementary, and can in particular be used to probe the susceptibility of elastic properties in polymer nanocomposites to aging.
Spent embryo culture medium metabolites are related to the in vitro attachment ability of blastocysts
Authors: D’Souza Fiona , Uppangala Shubhashree , Asampille Gitanjali , Salian Sujith Raj , Kalthur Guruprasad , Talevi Riccardo , Atreya Hanudatta S. , Adiga Satish Kumar 
Published: November 2018

AbstractThe metabolomic profile of an embryo culture medium can aid in the advanced prediction of embryonic developmental potential and genetic integrity. But it is not known if this technology can be used to determine the in vitro potential of inner cell mass (ICM) in adherence and proliferation. Here, we investigated the developmental potential of mouse 2-cell embryos carrying cisplatin-induced DNA lesions (IDL), beyond blastocyst stage using ICM outgrowth assay. The genetic integrity of ICM cells was determined by comet assay. The metabolic signatures of spent medium were recorded 84 hours post injection of hCG (hpi-hCG), and after 96 hours of extended in vitro culture (Ex 96) by NMR spectroscopy. We observed that blastocysts that lack the ability to adhere in vitro had an increased requirement of pyruvate (p < 0.01), lactate (p < 0.01), and were accompanied by a significant reduction of pyruvate-alanine ratio in the culture medium. We propose that the aforementioned metabolites from 84 hpi-hCG spent medium be further explored using appropriate experimental models, to prove their potential as biomarkers in the prediction of implantation ability of in vitro derived human embryos in clinical settings.
Temperature Sensing of Deep Abdominal Region in Mice by Using Over-1000 nm Near-Infrared Luminescence of Rare-Earth-Doped NaYF4 Nanothermometer
Authors: Sekiyama Shota , Umezawa Masakazu , Kuraoka Shuhei , Ube Takuji , Kamimura Masao , Soga Kohei 
Published: November 2018

AbstractLuminescence nanothermometry has attracted much attention as a non-contact thermal sensing technique. However, it is not widely explored for in vivo applications owing to the low transparency of tissues for the light to be used. In this study, we performed biological temperature sensing in deep tissues using β-NaYF4 nanoparticles co-doped with Yb3+, Ho3+, and Er3+ (NaYF4: Yb3+, Ho3+, Er3+ NPs), which displayed two emission peaks at 1150 nm (Ho3+) and 1550 nm (Er3+) in the >1000 nm near-infrared wavelength region, where the scattering and absorption of light by biological tissues are at the minimum. The change in the luminescence intensity ratio of the emission peaks of Ho3+ and Er3+ (IHo/IEr) in the NaYF4: Yb3+, Ho3+, Er3+ nanothermometer differs corresponding to the thickness of the tissue. Therefore, the relationship between IHo/IEr ratio and temperature needs to be calibrated by the depth of the nanothermometer. The temperature-dependent change in the IHo/IEr was evident at the peritoneal cavity level, which is deeper than the subcutaneous tissue level. The designed experimental system for temperature imaging will open the window to novel luminescent nanothermometers for in vivo deep tissue temperature sensing.