bluuebunny/crossref_metadata_2025_split huggingface dataset:
Heteroplasmy and Patterns of Cytonuclear Linkage Disequilibrium in Wild Carrot
Authors: Ramsey Adam J , McCauley David E , Mandel Jennifer R 
Published: June 2019

AbstractOrganellar genomes are considered to be strictly uniparentally-inherited. Uniparental inheritance allows for cytonuclear coevolution and the development of highly coordinated cytonuclear interactions. Yet, instances of biparental inheritance have been documented across eukaryotes. Biparental inheritance in otherwise uniparentally-inherited organelles is termed leakage (maternal or paternal) and allows for the presence of multiple variants of the same organellar genome within an individual, called heteroplasmy. It is unclear what, if any, evolutionary consequences are placed on nuclear and/or organellar genomes due to heteroplasmy. One way of accessing cytonuclear interactions and potential coevolution is through calculating cytonuclear linkage disequilibrium (cnLD), or the non-random association of alleles between nuclear and organellar genomes. Patterns of cnLD can indicate positive or negative cytonuclear selection, coevolution between the nuclear and organellar genomes, non-traditional organellar inheritance, or instances of ancestral heteroplasmy. In plants, cytonuclear interactions have been shown to play a role in cytoplasmic male sterility which occurs in gynodioecious species and is associated with leakage. We used the gynodioecious species, Daucus carota L. spp. carota, or wild carrot, to investigate cnLD. We genotyped a total of 265 individuals from two regions of the USA at 15 nuclear microsatellites, the mitochondrial genes cox1 and atp9, and an intergenic region between trnS and trnG (StoG) in the plastid genome to calculate nuclear–nuclear LD (nucLD), cnLD, and organellar LD (i.e., within the mtDNA and between mtDNA and ptDNA) within the two regions. We were further able to identify cox1 and StoG heteroplasmy and calculate some of the same LD measures within heteroplasmic and homoplasmic (non-heteroplasmic) datasets. We used a Z-transformation test to demonstrate that heteroplasmic individuals display significantly higher levels of cnLD within both regions. In spite of this, within and between organellar LD is low to moderate. Given these patterns of LD in two regions of the USA in which gene flow has been shown to occur between crop and wild carrot, we suggest that heteroplasmy is an evolutionary mechanism which permits the maintenance of cnLD while also acting to disrupt organellar LD.
Pest Status and Management of Corn Earworm (Lepidoptera: Noctuidae) in Field Corn in the United States
Authors: Reay-Jones Francis P F 
Published: June 2019

Abstract
The corn earworm, Helicoverpa zea (Boddie), is a common lepidopteran pest of corn (Zea mays L.) in the United States. This article provides an overview of the life history, ecology, plant injury, and management of H. zea in corn. Leaf injury by H. zea feeding can occur in vegetative stage corn, though this type of injury is rare. The most common type of injury is caused by larval feeding in ears. Because kernel injury is typically limited to the tip of the ear, H. zea is generally not considered an economic pest. The use of transgenic corn hybrids expressing insecticidal Cry proteins from Bacillus thuringiensis (Bt) Berliner can reduce injury from H. zea, though complete control is not achieved with most Bt traits. Resistance has been reported to several Bt toxins. Because H. zea is a major economic pest in cotton (Gossypium hirsutum L.) and because H. zea moths that developed on corn can migrate to cotton, selection pressure on H. zea in Bt corn has major implications for the pest status and injury to Bt cotton. Although the impact of H. zea on yield of field corn is generally negligible, the selection pressure exerted by Bt corn has led to management issues in cotton.
Skyborn: in-flight emergency births on commercial airlines
Authors: Heggie Travis W 
Published: June 2019

AbstractBackgroundThis study reports the global occurrence of in-flight emergency births on commercial airlines. To date, no existing research investigating in-flight emergency births has been published.MethodsA retrospective study was conducted of all known in-flight births on commercial airlines between 1929 and 2018.ResultsBetween 1929 and 2018, there were 74 infants born on 73 commercial flights. Seventy-one of the infants survived delivery, two died shortly after delivery and the status of one is unknown. Seventy-seven percent of the flights were designated international flights, and 26% of all flights were diverted due to the in-flight emergency births. The gestational age at delivery ranged from 25 to 38 weeks with 10% of the infants born at 37–38 weeks, 16% born at 34–36 weeks, 19% born at 31–33 weeks and 12% born prior to 32 weeks. Physicians, nurses, the flight crew and other medical personnel provided medical assistance in 45% of the births.ConclusionIn-flight emergency births are infrequent but not trivial. Commercial airlines are dependent on physicians and other medically trained passengers to help with in-flight deliveries.Despite US Federal Aviation Authority and Joint Aviation Authority standards, on-board medical and first aid kits are depleted and inadequate for in-flight deliveries.
Transcriptome-wide analysis of pseudouridylation of mRNA and non-coding RNAs in Arabidopsis
Authors: Sun Lirong , Xu Yuxing , Bai Shenglong , Bai Xue , Zhu Huijie , Dong Huan , Wang Wei , Zhu Xiaohong , Hao Fushun , Song Chun-Peng 
Published: June 2019

Abstract
Pseudouridine (Ψ) is widely distributed in mRNA and various non-coding RNAs in yeast and mammals, and the specificity of its distribution has been determined. However, knowledge about Ψs in the RNAs of plants, particularly in mRNA, is lacking. In this study, we performed genome-wide pseudouridine-sequencing in Arabidopsis and for the first time identified hundreds of Ψ sites in mRNA and multiple Ψ sites in non-coding RNAs. Many predicted and novel Ψ sites in rRNA and tRNA were detected. mRNA was extensively pseudouridylated, but with Ψs being under-represented in 3′-untranslated regions and enriched at position 1 of triple codons. The phenylalanine codon UUC was the most frequently pseudouridylated site. Some Ψs present in chloroplast 23S, 16S, and 4.5S rRNAs in wild-type Col-0 were absent in plants with a mutation of SVR1 (Suppressor of variegation 1), a chloroplast pseudouridine synthase gene. Many plastid ribosomal proteins and photosynthesis-related proteins were significantly reduced in svr1 relative to the wild-type, indicating the roles of SVR1 in chloroplast protein biosynthesis in Arabidopsis. Our results provide new insights into the occurrence of pseudouridine in Arabidopsis RNAs and the biological functions of SVR1, and will pave the way for further exploiting the mechanisms underlying Ψ modifications in controlling gene expression and protein biosynthesis in plants.
Gene Family Evolution in the Pea Aphid Based on Chromosome-Level Genome Assembly
Authors: Li Yiyuan , Park Hyunjin , Smith Thomas E , Moran Nancy A 
Published: June 2019

Abstract
Genome structural variations, including duplications, deletions, insertions, and inversions, are central in the evolution of eukaryotic genomes. However, structural variations present challenges for high-quality genome assembly, hampering efforts to understand the evolution of gene families and genome architecture. An example is the genome of the pea aphid (Acyrthosiphon pisum) for which the current assembly is composed of thousands of short scaffolds, many of which are known to be misassembled. Here, we present an improved version of the A. pisum genome based on the use of two long-range proximity ligation methods. The new assembly contains four long scaffolds (40–170 Mb), corresponding to the three autosomes and the X chromosome of A. pisum, and encompassing 86% of the new assembly. Assembly accuracy is supported by several quality assessments. Using this assembly, we identify the chromosomal locations and relative ages of duplication events, and the locations of horizontally acquired genes. The improved assembly illuminates the mode of gene family evolution by providing proximity information between paralogs. By estimating nucleotide polymorphism and coverage depth from resequencing data, we determined that many short scaffolds not assembling to chromosomes represent hemizygous regions, which are especially frequent on the highly repetitive X chromosome. Aligning the X-linked aphicarus region, responsible for male wing dimorphism, to the new assembly revealed a 50-kb deletion that cosegregates with the winged male phenotype in some clones. These results show that long-range scaffolding methods can substantially improve assemblies of repetitive genomes and facilitate study of gene family evolution and structural variation.
‘Death Germs Through the Post’: Postal Pathology and Workplace Experiences of Disease in Britain, c.1895–1935
Authors: Newman Laura 
Published: June 2019

Summary
This article examines the emergence of postal pathology in Britain from around 1895 onwards. It focuses on the impact of laboratory-centred diagnostic practices on the working experiences and practices of medical and laboratory practitioners, Post Office (PO) management and PO workers as they operated within the medical marketplace. It demonstrates the critical role the PO played in facilitating the growth of remote laboratory diagnosis. Whilst primarily focussing on the idea of postal pathology as denoting a set of material practices and exchanges that took place between the PO, clinicians and laboratories for the purposes of diagnosing disease, it also hints at the ways in which the PO has at various points in its history itself been pathologised and made subject to new prophylactic regimens to protect against disease transmission. Through studying the issues that arose with the circulation of pathological specimens, this work touches upon several themes that help us to better understand the challenges historical actors encountered when working with such potentially dangerous material on a regular basis. Previously underutilised sources such as laboratory manuals, medical diaries and PO archival records will help to reconstruct the working experiences of medical practitioners, laboratory workers and PO workers. By doing so, we can begin to gain a better understanding of how diverging epidemiologies of infectious diseases emerged as historical actors worked to successfully navigate the demands of their respective workplaces at a time when pathological specimens became increasingly ubiquitous, mobile commodities.
Families Improving Together (FIT) for weight loss: a resource for translation of a positive climate-based intervention into community settings
Authors: Law Lauren H , Wilson Dawn K , St. George Sara M , Kitzman Heather , Kipp Colby J 
Published: June 2019

Abstract
Climate-based weight loss interventions, or those that foster a nurturing family environment, address important ecological influences typically ignored by the traditional biomedical treatments. Promoting a climate characterized by positive communication, autonomy support, and parental warmth supports adolescents in making healthy behavioral changes. In addition, encouraging these skills within the family may have additional benefits of improved family functioning and other mental and physical health outcomes. Although several programs have identified essential elements and established the evidence base for the efficacy of these interventions, few have offered resources for the translation of these constructs from theoretical concepts to tangible practice. This paper provides strategies and resources utilized in the Families Improving Together (FIT) for weight loss randomized controlled trial to create a warm, supportive climate characterized by positive communication within the parent–child relationship. Detailed descriptions of how Project FIT emphasized these constructs through facilitator training, intervention curriculum, and process evaluation are provided as a resource for clinical and community interventions. Researchers are encouraged to provide resources to promote translation of evidence-based interventions for programs aiming to utilize a positive climate-based family approach for lifestyle modification.
Nocebo Hyperalgesia can be Induced by the Observation of a Model Showing Natural Pain Expressions
Authors: Vögtle Elisabeth , Kröner-Herwig Birgit , Barke Antonia 
Published: June 2019

Objectives:
Nocebo hyperalgesia is an increase in pain through the expectation of such an increase as a consequence of a sham treatment. Nocebo hyperalgesia can be induced by observation of a model demonstrating increased pain via verbal pain ratings. The aim of the present study was to investigate whether observing natural pain behavior, such as facial pain expressions, can also induce nocebo responses.

Materials and Methods:
Eighty female participants (age: 22.4 y±4.8) underwent a pressure-pain procedure (algometer) on both hands and rated their pain on a numerical rating scale. All participants received ointment on one of their hands, but no explanation was given for this. Before their own participation, the participants watched a video in which a woman underwent the same procedure and who either modeled increased pressure pain upon ointment application (nocebo condition) or showed a neutral facial expression throughout (control condition).

Results:
A 2×2 analysis of variance with condition (nocebo; control) as a between-subjects factor and ointment application (with; without) as a within-subject factor revealed a main effect for ointment and a condition×ointment interaction. In the nocebo condition, pain ratings were higher with ointment than without.

Discussion:
For the first time, it was shown that watching a model demonstrating pain through facial expressions induced nocebo hyperalgesia. As we mostly express pain through natural pain behavior rather than through pain ratings, this paradigm extends our knowledge of observational learning about pain and may have implications for contexts in which persons watch others undergo painful procedures.
Toxicologic and Inhibitory Receptor Actions of the Etomidate Analog ABP-700 and Its Metabolite CPM-Acid
Authors: Valk Beatrijs I. , McGrath Megan , Lehoux Dario , Zerler Brad , Marota John J. A. , Raines Douglas E. 
Published: June 2019

Abstract

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What This Article Tells Us That Is New

Background
The etomidate analog ABP-700 produces involuntary muscle movements that could be manifestations of seizures. To define the relationship (if any) between involuntary muscle movements and seizures, electroencephalographic studies were performed in Beagle dogs receiving supra-therapeutic (~10× clinical) ABP-700 doses. γ-aminobutyric acid type A (GABAA) and glycine receptor studies were undertaken to test receptor inhibition as the potential mechanism for ABP-700 seizures.

Methods
ABP-700 was administered to 14 dogs (6 mg/kg bolus followed by a 2-h infusion at 1 mg · kg-1 · min-1, 1.5 mg · kg-1 · min-1, or 2.3 mg · kg-1 · min-1). Involuntary muscle movements were documented, electroencephalograph was recorded, and plasma ABP-700 and CPM-acid concentrations were measured during and after ABP-700 administration. The concentration-dependent modulatory actions of ABP-700 and CPM-acid were defined in oocyte-expressed α1β3γ2L GABAA and α1β glycine receptors (n = 5 oocytes/concentration) using electrophysiologic techniques.

Results
ABP-700 produced both involuntary muscle movements (14 of 14 dogs) and seizures (5 of 14 dogs). However, these phenomena were temporally and electroencephalographically distinct. Mean peak plasma concentrations were (from lowest to highest dosed groups) 35 μM, 45 μM, and 102 μM (ABP-700) and 282 μM, 478 μM, and 1,110 μM (CPM-acid). ABP-700 and CPM-acid concentration–GABAA receptor response curves defined using 6 μM γ-aminobutyric acid exhibited potentiation at low and/or intermediate concentrations and inhibition at high ones. The half-maximal inhibitory concentrations of ABP-700 and CPM-acid defined using 1 mM γ-aminobutyric acid were 770 μM (95% CI, 590 to 1,010 μM) and 1,450 μM (95% CI, 1,340 to 1,560 μM), respectively. CPM-acid similarly inhibited glycine receptors activated by 1 mM glycine with a half-maximal inhibitory concentration of 1,290 μM (95% CI, 1,240 to 1,330 μM).

Conclusions
High dose ABP-700 infusions produce involuntary muscle movements and seizures in Beagle dogs via distinct mechanisms. CPM-acid inhibits both GABAA and glycine receptors at the high (~100× clinical) plasma concentrations achieved during the dog studies, providing a plausible mechanism for the seizures.
Point of Care Ultrasound to Identify Diaphragmatic Dysfunction after Thoracic Surgery
Authors: Spadaro S. , Grasso S. , Dres M. , Fogagnolo A. , Dalla Corte F. , Tamburini N. , Maniscalco P. , Cavallesco G. , Alvisi V. , Stripoli T. , De Camillis E. , Ragazzi R. , Volta C. A. 
Published: June 2019

Abstract

Editor’s Perspective

What We Already Know about This Topic

What This Article Tells Us That Is New

Background
Postoperative diaphragmatic dysfunction after thoracic surgery is underestimated due to the lack of reproducible bedside diagnostic methods. We used point of care ultrasound to assess diaphragmatic function bedside in patients undergoing video-assisted thoracoscopic or thoracotomic lung resection. Our main hypothesis was that the thoracoscopic approach may be associated with lower incidence of postoperative diaphragm dysfunction as compared to thoracotomy. Furthermore, we assessed the association between postoperative diaphragmatic dysfunction and postoperative pulmonary complications.

Methods
This was a prospective observational cohort study. Two cohorts of patients were evaluated: those undergoing video-assisted thoracoscopic surgery versus those undergoing thoracotomy. Diaphragmatic dysfunction was defined as a diaphragmatic excursion less than 10 mm. The ultrasound evaluations were carried out before (preoperative) and after (i.e., 2 h and 24 h postoperatively) surgery. The occurrence of postoperative pulmonary complications was assessed up to 7 days after surgery.

Results
Among the 75 patients enrolled, the incidence of postoperative diaphragmatic dysfunction at 24 h was higher in the thoracotomy group as compared to video-assisted thoracoscopic surgery group (29 of 35, 83% vs. 22 of 40, 55%, respectively; odds ratio = 3.95 [95% CI, 1.5 to 10.3]; P = 0.005). Patients with diaphragmatic dysfunction on the first day after surgery had higher percentage of postoperative pulmonary complications (odds ratio = 5.5 [95% CI, 1.9 to 16.3]; P = 0.001). Radiologically assessed atelectasis was 46% (16 of 35) in the thoracotomy group versus 13% (5 of 40) in the video-assisted thoracoscopic surgery group (P = 0.040). Univariate logistic regression analysis indicated postoperative diaphragmatic dysfunction as a risk factor for postoperative pulmonary complications (odds ratio = 5.5 [95% CI, 1.9 to 16.3]; P = 0.002).

Conclusions
Point of care ultrasound can be used to evaluate postoperative diaphragmatic function. On the first postoperative day, diaphragmatic dysfunction was less common after video-assisted than after the thoracotomic surgery and is associated with postoperative pulmonary complications.
The Utility of Leukocyte Esterase Strip Test in the Diagnosis of Pediatric Septic Arthritis
Authors: Mortazavi Seyed Mohammad Javad , Kalantar Hadi , Baghdadi Soroush , Nabian Mohammad H. , Haj Zargarbashi Ramin , Riahi Ahmad , Moharrami Alireza , Zahraei Bakhsh Fatemeh , Baghdadi Taghi 
Published: June 2019

Background:
Most tests used to diagnose pediatric septic arthritis are either not accurate or do not produce rapid results. A leukocyte esterase (LE) strip test has previously been validated for the diagnosis of adult native and periprosthetic joint infections. The purpose of this prospective study was to: (1) evaluate the performance characteristics of the LE strip test in the diagnosis of pediatric septic arthritis and (2) determine the false positive rate of LE strip test on the aseptic synovial fluid (SF).

Methods:
Between May 2016 and November 2018, SF was obtained from children who were hospitalized at our tertiary referral center on the basis of suspicion of septic arthritis. All patients underwent arthrocentesis, and the aspirate was tested with LE strip test, leukocyte count, and culture. Twenty-five patients satisfied the inclusion criteria. For the second part of the study, SF from 25 children undergoing surgery for developmental dysplasia of the hip was collected and tested with LE strip test, leukocyte count, and culture.

Results:
In the first part of this study, 19 joints were classified as septic and 6 as aseptic. Considering a positive LE strip test (“++” and “+++” readings) indicative of septic arthritis yielded a sensitivity of 100%, specificity of 83%, positive predictive value of 95%, and negative predictive value of 100%. In the second part, all 25 patients with an aseptic SF had a negative test result (“−” and “+” readings).

Conclusions:
The LE strip test seems to be a valuable additional tool in the diagnosis of pediatric septic arthritis. The LE strip test has the advantages of being inexpensive and simple, providing real-time results and having a perfect negative predictive value to rule out the diagnosis of septic arthritis.

Level of Evidence:
Level II—diagnostic.
All-Cause 30-Day Mortality After Surgical Treatment for Head and Neck Squamous Cell Carcinoma in the United States
Authors: Bukatko Aleksandr R. , Patel Parth B. , Kakarla Vindhya , Simpson Matthew C. , Adjei Boakye Eric , Patel Shivam H. , Stamatakis Katherine A. , Varvares Mark A. , Osazuwa-Peters Nosayaba 
Published: June 2019

Objectives:
Thirty-day (30-day) mortality, a common posttreatment quality metric, is yet to be described following surgery for head and neck squamous cell carcinoma (HNSCC). This study aimed to measure 30-day postoperative mortality in HNSCC and describe clinical/nonclinical factors associated with 30-day mortality.

Methods:
In this retrospective cohort study, the National Cancer Database (2004 to 2013) was queried for eligible cases of HNSCC (n=91,858). Adult patients were included who were treated surgically with curative intent for the primary HNSCC, not missing first treatment, survival, and follow-up information. The outcome of interest was all-cause mortality within 30 days of definitive surgery. Clinical and nonclinical factors associated with all-cause 30-day postoperative mortality were estimated using a fully adjusted, multivariable logistic regression, which accounted for time-varying nature of adjuvant therapy.

Results:
A total of 775 patients died within 30 days of definitive surgery for HNSCC (30-day mortality rate of 0.84%). Thirty-day mortality rate was however up to 2.33% (95% confidence interval [CI], 1.91%-2.75%) depending on comorbidity. In the fully adjusted model, increasing severity of comorbidity was associated with greater odds of 30-day mortality (Charlson-Deyo comorbidity scores of 1: adjusted odds ratio [aOR], 1.43; 95% CI, 1.21-1.69, and of 2+ aOR, 2.55; 95% CI, 2.07-3.14). Odds of 30-day mortality were greater among Medicaid patients (aOR, 1.77; 95% CI, 1.30-2.41), and in patients in neighborhoods with little education (≥ 29% missing high school diploma: aOR, 1.35; 95% CI, 1.02-1.78).

Conclusions:
Patients with higher 30-day mortality were those with a greater burden of comorbidities, with little education, and covered by Medicaid.