bluuebunny/crossref_metadata_2025_split huggingface dataset:
A MYST Histone Acetyltransferase Modulates Conidia Development and Secondary Metabolism in Pestalotiopsis microspora, a Taxol Producer
Authors: Zhang Qian , Akhberdi Oren , Wei Dongsheng , Chen Longfei , Liu Heng , Wang Dan , Hao Xiaoran , Zhu Xudong 
Published: May 2018

AbstractReverse genetics is a promising strategy for elucidating the regulatory mechanisms involved in secondary metabolism and development in fungi. Previous studies have demonstrated the key role of histone acetyltransferases in transcriptional regulation. Here, we identified a MYST family histone acetyltransferase encoding gene, mst2, in the filamentous fungus Pestalotiopsis microspora NK17 and revealed its role in development and secondary metabolism. The gene mst2 showed temporal expression that corresponded to the conidiation process in the wild-type strain. Deletion of mst2 resulted in serious growth retardation and impaired conidial development, e.g., a delay and reduced capacity of conidiation and aberrant conidia. Overexpression of mst2 triggered earlier conidiation and higher conidial production. Additionally, deletion of mst2 led to abnormal germination of the conidia and caused cell wall defects. Most significantly, by HPLC profiling, we found that loss of mst2 diminished the production of secondary metabolites in the fungus. Our data suggest that mst2 may function as a general mediator in growth, secondary metabolism and morphological development.
Children’s screen time alters the expression of saliva extracellular miR-222 and miR-146a
Authors: Vriens Annette , Provost Eline B. , Saenen Nelly D. , De Boever Patrick , Vrijens Karen , De Wever Oliver , Plusquin Michelle , Nawrot Tim S. 
Published: May 2018

AbstractAn imbalance between energy uptake and energy expenditure is the most important reason for increasing trends in obesity starting from early in life. Extracellular miRNAs are expressed in all bodily fluids and their expression is influenced by a broad range of stimuli. We examined whether screen time, physical activity and BMI are associated with children’s salivary extracellular miR-222 and miR-146a expression. In 80 children the extracellular fraction of saliva was obtained by means of differential centrifugation and ultracentrifugation. Expression levels of miR-222 and miR-146a were profiled by qPCR. We studied the association between children’s salivary extracellular miRNA expression and screen time, physical activity and BMI using mixed models, while accounting for potential confounders. We found that higher screen time was positively associated with salivary extracellular miR-222 and miR-146a levels. On average, one hour more screen time use per week was associated with a 3.44% higher miR-222 (95% CI: 1.34 to 5.58; p = 0.002) and 1.84% higher miR-146a (95% CI: −0.04 to 3.75; p = 0.055) level in saliva. BMI and physical activity of the child were not significantly associated with either miR-222 or miR-146a. A sedentary behaviour, represented by screen time use in children, is associated with discernible changes in salivary expression of miR-146a and or miR-222. These miRNA targets may emerge attractive candidates to explore the role of these exposures in developmental processes of children’s health.
Chytridiomycosis causes catastrophic organism-wide metabolic dysregulation including profound failure of cellular energy pathways
Authors: Grogan Laura F. , Skerratt Lee F. , Berger Lee , Cashins Scott D. , Trengove Robert D. , Gummer Joel P. A. 
Published: May 2018

AbstractChytridiomycosis is among several recently emerged fungal diseases of wildlife that have caused decline or extinction of naïve populations. Despite recent advances in understanding pathogenesis, host response to infection remains poorly understood. Here we modelled a total of 162 metabolites across skin and liver tissues of 61 frogs from four populations (three long-exposed and one naïve to the fungus) of the Australian alpine tree frog (Litoria verreauxii alpina) throughout a longitudinal exposure experiment involving both infected and negative control individuals. We found that chytridiomycosis dramatically altered the organism-wide metabolism of clinically diseased frogs. Chytridiomycosis caused catastrophic failure of normal homeostatic mechanisms (interruption of biosynthetic and degradation metabolic pathways), and pronounced dysregulation of cellular energy metabolism. Key intermediates of the tricarboxylic acid cycle were markedly depleted, including in particular α-ketoglutarate and glutamate that together constitute a key nutrient pathway for immune processes. This study was the first to apply a non-targeted metabolomics approach to a fungal wildlife disease and specifically to dissect the host-pathogen interface of Bd-infected frogs. The patterns of metabolite accumulation we have identified reveal whole-body metabolic dysfunction induced by a fungal skin infection, and these findings have broad relevance for other fungal diseases.
Self-assembly, optical and electrical properties of perylene diimide dyes bearing unsymmetrical substituents at bay position
Authors: Zhang Fengxia , Ma Yongshan , Chi Yanhui , Yu Haohai , Li Yanan , Jiang Tianyi , Wei Xiaofeng , Shi Jingmin 
Published: May 2018

AbstractPerylene diimides (PDIs) are one class of the most explored organic fluorescent materials due to their high luminescence efficiency, optoelectronic properties, and ready to form well-tailored supramolecular structures. However, heavy aggregation caused quenching (ACQ) effect in solid state has greatly limited their potential applications. We have easily solved this problem by chemical modification of the PDI core with only phenoxy moietie at one of the bay position. In this paper, we report two perylene bisimides with small rigid substituents, 1- phenol -N, N’-dicyclohexyl perylene-3,4,9,10-tetracarboxylic diimide (PDI 1) and 1- p-chlorophenol-N, N’-dicyclohexyl perylene-3,4,9,10-tetracarboxylic diimide (PDI 2) possess both well defined organic nanostructures and high fluorescence quantum yield in the solid state. In contrast, 1-propanol-N, N’-dicyclohexyl perylene-3,4,9,10-tetracarboxylic diimide (PDI 3) bearing a straight chain only shown weak orange fluorescence. In addition, morphological inspection demonstrated that PDI 3 molecules easily form well-organized microstructures despite the linkage of the PDI core with a straight chain. The present strategy could provide a generic route towards novel and advanced fluorescent materials and these materials may find various applications in high-tech fields.
The analysis of MSTMOVCF (Multi-segment thoracolumbar mild osteoporotic fractures surgery or conservative treatment) based on ASTLOF (the assessment system of thoracolumbar osteoporotic fracture)
Authors: Du Jin Peng , Fan Yong , Liu Ji Jun , Zhang Jia Nan , Huang Yan Sheng , Zhang Jing , Hao Ding Jun 
Published: May 2018

AbstractTo investigate the issue that conservative or surgical treatment for multi-segmental thoracolumbar mild osteoporotic vertebral compression fracture (MSTMOVCF) by applying the assessment system of thoracolumbar osteoporotic fracture (ASTLOF). A single-center prospective cohort study was designed to enroll elderly patients with MSTMOVCF from June 2013 to June 2016, which were divided into conservative and surgery group. The primary outcomes were Visual Analogue Scale (VAS) score and Oswestry Disability Index (ODI) score, with secondary outcomes including SF-36 and imaging measures such as height of anterior and middle column, Beck value, complications. A total of 470 patients with MSTMOVCF were enrolled. 193 patients underwent surgery of percutaneous vertebroplasty (PVP) or percutaneous kyphoplasty (PKP) and 277 patients underwent conservative treatment. The VAS score of operation group was significantly lower than that of conservative group (P < 0.0001, for all). The ODI score of the operation group was significantly lower than that of conservative group (P < 0.0001, for all). The SF-36 score, height of anterior and middle column, Beck value in the operation group were higher than those in conservative group (P < 0.0001, for all) at 1-year follow-up. MSTMOVCF underwent surgery can achieve great short-term clinical results. The patient with the sum of revised ASTLOF scores of multiple injured vertebrae ≥ 5 was recommended for surgery.
Enhanced magnetocaloric effect in Ni-Mn-Sn-Co alloys with two successive magnetostructural transformations
Authors: Zhang Xuexi , Zhang Hehe , Qian Mingfang , Geng Lin 
Published: May 2018

AbstractHigh magnetocaloric refrigeration performance requires large magnetic entropy change ΔS
M
and broad working temperature span ΔT
FWHM
. A fourth element doping of Co in ternary Ni-Mn-Sn alloy may significantly enhance the saturation magnetization of the alloy and thus enhance the ΔS
M
. Here, the effects of Co-doping on the martensite transformation, magnetic properties and magnetocaloric effects (MCE) of quaternary Ni47−xMn43Sn10Cox (x = 0, 6, 11) alloys were investigated. The martensite transformation temperatures decrease while austenite Curie point increases with Co content increasing to x = 6 and 11, thus broadening the temperature window for a high magnetization austenite (13.5, 91.7 and 109.1 A·m2/kg for x = 0, 6 and 11, respectively). Two successive magnetostructural transformations (A → 10 M and A → 10 M + 6 M) occur in the alloy x = 6, which are responsible for the giant magnetic entropy change ΔS
M =
29.5 J/kg·K, wide working temperature span ΔT
FWHM
= 14 K and large effective refrigeration capacity RC
eff
= 232 J/kg under a magnetic field of 5.0 T. These results suggest that Ni40.6Mn43.3Sn10.0Co6.1 alloy may act as a potential solid-state magnetic refrigerant working at room temperature.
Multilayer Aggregation with Statistical Validation: Application to Investor Networks
Authors: Baltakys Kęstutis , Kanniainen Juho , Emmert-Streib Frank 
Published: May 2018

AbstractMultilayer networks are attracting growing attention in many fields, including finance. In this paper, we develop a new tractable procedure for multilayer aggregation based on statistical validation, which we apply to investor networks. Moreover, we propose two other improvements to their analysis: transaction bootstrapping and investor categorization. The aggregation procedure can be used to integrate security-wise and time-wise information about investor trading networks, but it is not limited to finance. In fact, it can be used for different applications, such as gene, transportation, and social networks, were they inferred or observable. Additionally, in the investor network inference, we use transaction bootstrapping for better statistical validation. Investor categorization allows for constant size networks and having more observations for each node, which is important in the inference especially for less liquid securities. Furthermore, we observe that the window size used for averaging has a substantial effect on the number of inferred relationships. We apply this procedure by analyzing a unique data set of Finnish shareholders during the period 2004–2009. We find that households in the capital have high centrality in investor networks, which, under the theory of information channels in investor networks suggests that they are well-informed investors.
Expansion of human primary hepatocytes in vitro through their amplification as liver progenitors in a 3D organoid system
Authors: Garnier Delphine , Li Ruoya , Delbos Frédéric , Fourrier Angélique , Collet Camille , Guguen-Guillouzo Christiane , Chesné Christophe , Nguyen Tuan Huy 
Published: May 2018

AbstractDespite decades of investigation on the proliferation of adult human primary hepatocytes, their expansion in vitro still remains challenging. To later be able to consider hepatocytes as a cell therapy alternative or bridge to liver transplantation, dramatically impeded by a shortage in liver donors, the first step is having an almost unlimited source of these cells. The banking of transplantable hepatocytes also implies a protocol for their expansion that can be compatible with large-scale production. We show that adult human primary hepatocytes when grown in 3D organoids are easily amplified, providing a substantial source of functional hepatocytes ready for transplantation. Following their plating, differentiated human hepatocytes are amplified during a transient and reversible step as liver progenitors, and can subsequently be converted back to mature differentiated hepatocytes. The protocol we propose is not only compatible with automated and high-throughput cell culture systems, thanks to the expansion of hepatocytes in suspension, but also guarantees the generation of a high number of functional cells from the same patient sample, with a relatively easy set up.
Beta and gamma human papillomaviruses in anal and genital sites among men: prevalence and determinants
Authors: Smelov Vitaly , Muwonge Richard , Sokolova Olga , McKay-Chopin Sandrine , Eklund Carina , Komyakov Boris , Gheit Tarik 
Published: May 2018

AbstractData regarding the anogenital distribution of and type-specific concordance for cutaneous β- and γ-HPV types in men who have sex with women is limited and geographically narrow. Knowledge of determinants of anogenital detection of cutaneous HPV types in different regions is needed for better understanding of the natural history and transmission dynamics of HPV, and its potential role in the development of anogenital diseases. Genital and anal canal samples obtained from 554 Russian men were screened for 43 β-HPVs and 29 γ-HPVs, using a multiplex PCR combined with Luminex technology. Both β- and γ-HPVs were more prevalent in the anal (22.8% and 14.1%) samples than in the genital (16.8% and 12.3%) samples. Low overall and type-specific concordance for β-HPVs (3.5% and 1.1%) and γ-HPVs (1.3% and 0.6%) were observed between genital and anal samples. HIV-positive men had higher anal β- (crude OR = 12.2, 95% CI: 5.3–28.1) and γ-HPV (crude OR = 7.2, 95% CI: 3.3–15.4) prevalence than HIV-negative men. Due to the lack of genital samples from the HIV-positive men, no comparison was possible for HIV status in genital samples. The lack of type-specific positive concordance between genital and anal sites for cutaneous β- and γ-HPV types in heterosexual men posits the needs for further studies on transmission routes to discriminate between contamination and true HPV infection. HIV-positive status may favor the anal acquisition or modify the natural history of cutaneous HPV types.
Classification of Spatiotemporal Neural Activity Patterns in Brain Imaging Data
Authors: Song Min , Kang Minseok , Lee Hyeonsu , Jeong Yong , Paik Se-Bum 
Published: May 2018

AbstractVarious patterns of neural activity are observed in dynamic cortical imaging data. Such patterns may reflect how neurons communicate using the underlying circuitry to perform appropriate functions; thus it is crucial to investigate the spatiotemporal characteristics of the observed neural activity patterns. In general, however, neural activities are highly nonlinear and complex, so it is a demanding job to analyze them quantitatively or to classify the patterns of observed activities in various types of imaging data. Here, we present our implementation of a novel method that successfully addresses the above issues for precise comparison and classification of neural activity patterns. Based on two-dimensional representations of the geometric structure and temporal evolution of activity patterns, our method successfully classified a number of computer-generated sample patterns created from combinations of various spatial and temporal patterns. In addition, we validated our method with voltage-sensitive dye imaging data of Alzheimer’s disease (AD) model mice. Our analysis algorithm successfully distinguished the activity data of AD mice from that of wild type with significantly higher performance than previously suggested methods. Our result provides a pragmatic solution for precise analysis of spatiotemporal patterns of neural imaging data.
Dynamics of directional tuning and reference frames in humans: A high-density EEG study
Authors: Tanaka Hirokazu , Miyakoshi Makoto , Makeig Scott 
Published: May 2018

AbstractRecent developments in EEG recording and signal processing have made it possible to record in an unconstrained, natural movement task, therefore EEG provides a promising approach to understanding the neural mechanisms of upper-limb reaching control. This study specifically addressed how EEG dynamics in the time domain encoded finger movement directions (directional tuning) and posture dependence (movement reference frames) by applying representational similarity analysis. High-density EEG covering the entire scalp was recorded while participants performed eight-directional, center-out reaching movements, thereby allowing us to explore directional selectivity of EEG sources over the brain beyond somatosensory areas. A majority of the source processes exhibited statistically significant directional tuning during peri-movement periods. In addition, directional tuning curves shifted systematically when the shoulder angle was rotated to perform the task within a more laterally positioned workspace, the degree of tuning curve rotation falling between that predicted by models assuming extrinsic and shoulder-based reference frames. We conclude that temporal dynamics of neural mechanisms for motor control can be studied noninvasively in humans using high-density EEG and that directional sensitivity of motor and non-motor processing is not limited within the sensorimotor areas but extends to the whole brain areas.
Quantum entanglement of a harmonic oscillator with an electromagnetic field
Authors: Makarov Dmitry N. 
Published: May 2018

AbstractAt present, there are many methods for obtaining quantum entanglement of particles with an electromagnetic field. Most methods have a low probability of quantum entanglement and not an exact theoretical apparatus based on an approximate solution of the Schrodinger equation. There is a need for new methods for obtaining quantum-entangled particles and mathematically accurate studies of such methods. In this paper, a quantum harmonic oscillator (for example, an electron in a magnetic field) interacting with a quantized electromagnetic field is considered. Based on the exact solution of the Schrodinger equation for this system, it is shown that for certain parameters there can be a large quantum entanglement between the electron and the electromagnetic field. Quantum entanglement is analyzed on the basis of a mathematically exact expression for the Schmidt modes and the Von Neumann entropy.
Psilocybin and MDMA reduce costly punishment in the Ultimatum Game
Authors: Gabay Anthony S. , Carhart-Harris Robin L. , Mazibuko Ndaba , Kempton Matthew J. , Morrison Paul D. , Nutt David J. , Mehta Mitul A. 
Published: May 2018

AbstractDisruptions in social decision-making are becoming evident in many psychiatric conditions. These are studied using paradigms investigating the psychological mechanisms underlying interpersonal interactions, such as the Ultimatum Game (UG). Rejection behaviour in the UG represents altruistic punishment – the costly punishment of norm violators – but the mechanisms underlying it require clarification. To investigate the psychopharmacology of UG behaviour, we carried out two studies with healthy participants, employing serotonergic agonists: psilocybin (open-label, within-participant design, N = 19) and 3,4-methylenedioxymethamphetamine (MDMA; placebo-controlled, double-blind, crossover design, N = 20). We found that both MDMA and psilocybin reduced rejection of unfair offers (odds ratio: 0.57 and 0.42, respectively). The reduction in rejection rate following MDMA was associated with increased prosociality (R2 = 0.26,p = 0.025). In the MDMA study, we investigated third-party decision-making and proposer behaviour. MDMA did not reduce rejection in the third-party condition, but produced an increase in the amount offered to others (Cohen’sd = 0.82). We argue that these compounds altered participants’ conceptualisation of ‘social reward’, placing more emphasis on the direct relationship with interacting partners. With these compounds showing efficacy in drug-assisted psychotherapy, these studies are an important step in the further characterisation of their psychological effects.
Rapid and Efficient FISH using Pre-Labeled Oligomer Probes
Authors: Waminal Nomar Espinosa , Pellerin Remnyl Joyce , Kim Nam-Soo , Jayakodi Murukarthick , Park Jee Young , Yang Tae-Jin , Kim Hyun Hee 
Published: May 2018

AbstractFluorescence in situ hybridization (FISH) is used to visualize the distribution of DNA elements within a genome. Conventional methods for FISH take 1–2 days. Here, we developed a simplified, rapid FISH technique using pre-labeled oligonucleotide probes (PLOPs) and tested the procedure using 18 PLOPs from 45S and 5S rDNA, Arabidopsis-type telomere, and newly-identified Panax ginseng-specific tandem repeats. The 16 developed rDNA PLOPs can be universally applied to plants and animals. The telomere PLOPs can be utilized in most plants with Arabidopsis-type telomeres. The ginseng-specific PLOP can be used to distinguish P. ginseng from related Panax species. Differential labeling of PLOPs allowed us to simultaneously visualize different target loci while reducing the FISH hybridization time from ~16 h to 5 min. PLOP-FISH is efficient, reliable, and rapid, making it ideal for routine analysis, especially of newly sequenced genomes using either universal or specific targets, such as novel tandem repeats identified from whole-genome sequencing data.
A qualitative proteome-wide lysine crotonylation profiling of papaya (Carica papaya L.)
Authors: Liu Kaidong , Yuan Changchun , Li Haili , Chen Kunyan , Lu Lishi , Shen Chenjia , Zheng Xiaolin 
Published: May 2018

AbstractLysine crotonylation of histone proteins is a recently-identified post-translational modification with multiple cellular functions. However, no information about lysine crotonylation of non-histone proteins in fruit cells is available. Using high-resolution LC-MS/MS coupled with highly sensitive immune-affinity antibody analysis, a global crotonylation proteome analysis of papaya fruit (Carica papaya L.) was performed. In total, 2,120 proteins with 5,995 lysine crotonylation sites were discovered, among which eight conserved motifs were identified. Bioinformatic analysis linked crotonylated proteins to multiple metabolic pathways, including biosynthesis of antibiotics, carbon metabolism, biosynthesis of amino acids, and glycolysis. particularly, 40 crotonylated enzymes involved in various pathways of amino acid metabolism were identified, suggesting a potential conserved function for crotonylation in the regulation of amino acid metabolism. Numerous crotonylation sites were identified in proteins involved in the hormone signaling and cell wall-related pathways. Our comprehensive crotonylation proteome indicated diverse functions for lysine crotonylation in papaya.