bluuebunny/crossref_metadata_2025_split huggingface dataset:
Factors Associated With Variation in Home-Range Size of Appalachian Ruffed Grouse (Bonasa Umbellus)
Authors: Whitaker Darroch M. , Stauffer Dean F. , Norman Gary W. , Devers Patrick K. , Edwards John , Giuliano William M. , Harper Craig , Igo William , Sole Jeff , Spiker Harry , Tefft Brian 
Published: September 2019

Abstract
From 1996 to 2001, researchers at 10 Appalachian study sites collected radiotracking data sufficient to delineate 1,054 seasonal home ranges of Ruffed Grouse (Bonasa umbellus; hereafter “grouse”). Using information-theoretic model selection and paired comparison of home ranges from individual grouse, we evaluated individual, local, and landscape factors hypothesized to affect grouse home-range size. Females and juvenile males occupied home ranges that averaged >2× larger than those of adult males, and home ranges of females averaged 2.6× larger during successful breeding seasons than during years of reproductive failure. Clearcuts and forest roads are considered high-quality covers, and both were more prevalent in smaller home ranges. Several factors operating at a regional and landscape scale were also important. Previous studies have reported that southern grouse use relatively large home ranges, and we observed a continuous decline in home-range size with increasing latitude across the 710-km range spanned by our study sites. Home-range size of males, particularly juvenile males, was positively related to an index of population density. Given the species' “dispersed lekking” mating system, we interpret this as evidence of competition for preferred display sites. As has been reported for other game birds, all sex and age classes of grouse used smaller home ranges following closure of sites to hunting. Grouse inhabiting oak-hickory forests used larger home ranges than conspecifics in mixed mesophytic forests, and other factors interacted with forest type. In oak-hickory forests, female home-range size was inversely related to use of mesic bottomlands, which support important forage plants, and home ranges of adult grouse increased 2.5× following poor hard-mast crops. By contrast, home ranges of grouse inhabiting mixed mesophytic forests were unrelated to use of bottomlands, and the influence of hard mast was reduced. This is in line with the view that in Appalachian oak-hickory forests, grouse are under strong nutritional constraint. However, this constraint is reduced in mixed mesophytic forests, likely because of the presence of high-quality alternative foods (e.g., cherry [Prunus spp.] and birch [Betula spp.]).
Facteurs associés à une variation de la taille du domaine vital de Bonasa umbellus dans les Appalaches
Habitat Partitioning of Four Sympatric Thrush Species at Three Spatial Scales on a Managed Forest in West Virginia
Authors: Dellinger Rachel L. , Wood Petra Bohall , Keyser Patrick D. , Seidel George 
Published: September 2019

AbstractFour thrush species are sympatric in the central Appalachians: Veery (Catharus fuscescens), Hermit Thrush (C. guttatus), Wood Thrush (Hylocichla mustelina), and American Robin (Turdus migratorius). The four species often nest near one another, which suggests that habitat partitioning may have developed to minimize past interspecific competition. Our objectives were to determine which specific characteristics of nesting habitat were partitioned among the species and to evaluate the relationship of these characteristics to nest survival. We monitored nests and sampled habitat variables at three spatial scales: nest substrate, nest site, and territory. A multivariate analysis of variance indicated a difference (P < 0.01) in the nest sites of all species and in each pairwise species contrast. An analysis of variance and Fisher’s exact tests detected differences (P < 0.05) among species in 21 of 36 variables measured. Classification tree analysis correctly classified nests by species at a rate better than would be expected at random. Habitat partitioning among the four thrush species occurred at all three scales sampled, with the most important partitioning variables being nest height, distance-to-edge, sapling density, and elevation. Mayfield logistic regression found a positive relationship (P < 0.05) between decreasing nest height and American Robin nest survival. Overall, nest survival was similar among the four thrush species examined, and most of the variables that we measured were unrelated to survival.Partition de l’habitat de quatre espèces sympatriques de grives à trois échelles spatiales dans une forêt aménagée de la Virginie-Occidentale
Ecology and Behavior of Chickadees and Titmice: An Integrated Approach
Authors: Brennan Leonard A. 
Published: September 2019

Abstract
The following critiques express the opinions of the individual evaluators regarding the strengths, weaknesses, and value of the books they review. As such, the appraisals are subjective assessments and do not necessarily reflect the opinions of the editors or any official policy of the American Ornithologists’ Union.
Linking men's voice pitch to actual and perceived trustworthiness across domains
Authors: Schild Christoph , Stern Julia , Zettler Ingo 
Published: September 2019

Abstract
Previous research suggests that judgments about a male speaker's trustworthiness vary due to the speaker's voice pitch (mean F0) and differ across domains. However, mixed results in terms of the direction and extent of such effects have been reported. Moreover, no study so far has investigated whether men's mean F0 is, indeed, a valid cue to their self-reported and behavioral trustworthiness, and whether trustworthiness judgments are accurate. We tested the relation between mean F0 and actual general, economic, and mating-related trustworthiness in 181 men, as well as trustworthiness judgments of 95 perceivers across all three domains. Analyses show that men's mean F0 is not related to Honesty–Humility (as a trait indicator of general trustworthiness), trustworthy intentions, or trust game behavior, suggesting no relation of mean F0 to general or economic trustworthiness. In contrast, results suggest that mean F0 might be related to mating-related trustworthiness (as indicated by self-reported relationship infidelity). However, lower mean F0 was judged as more trustworthy in economic but less trustworthy in mating-related domains and rather weakly related to judgments of general trustworthiness. Trustworthiness judgments were not accurate for general or economic trustworthiness, but exploratory analyses suggest that women might be able to accurately judge men's relationship infidelity based on their voice pitch. Next to these analyses, we report exploratory analyses involving and controlling for additional voice parameters.
QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data
Authors: Xie Juan , Ma Anjun , Zhang Yu , Liu Bingqiang , Cao Sha , Wang Cankun , Xu Jennifer , Zhang Chi , Ma Qin 
Published: September 2019

AbstractMotivationThe biclustering of large-scale gene expression data holds promising potential for detecting condition-specific functional gene modules (i.e. biclusters). However, existing methods do not adequately address a comprehensive detection of all significant bicluster structures and have limited power when applied to expression data generated by RNA-Sequencing (RNA-Seq), especially single-cell RNA-Seq (scRNA-Seq) data, where massive zero and low expression values are observed.ResultsWe present a new biclustering algorithm, QUalitative BIClustering algorithm Version 2 (QUBIC2), which is empowered by: (i) a novel left-truncated mixture of Gaussian model for an accurate assessment of multimodality in zero-enriched expression data, (ii) a fast and efficient dropouts-saving expansion strategy for functional gene modules optimization using information divergency and (iii) a rigorous statistical test for the significance of all the identified biclusters in any organism, including those without substantial functional annotations. QUBIC2 demonstrated considerably improved performance in detecting biclusters compared to other five widely used algorithms on various benchmark datasets from E.coli, Human and simulated data. QUBIC2 also showcased robust and superior performance on gene expression data generated by microarray, bulk RNA-Seq and scRNA-Seq.Availability and implementationThe source code of QUBIC2 is freely available at https://github.com/OSU-BMBL/QUBIC2.Supplementary informationSupplementary data are available at Bioinformatics online.
Echiniscus virginicus complex: the first case of pseudocryptic allopatry and pantropical distribution in tardigrades
Authors: Gąsiorek Piotr , Jackson Kathy J , Meyer Harry A , Zając Krzysztof , Nelson Diane R , Kristensen Reinhardt M , Michalczyk Łukasz 
Published: September 2019

AbstractMainly because of the problems with species delineation, the biogeography of microscopic organisms is notoriously difficult to elucidate. In this contribution, variable nuclear and mitochondrial DNA markers were sequenced from individual specimens representing the Echiniscus virginicus complex that are morphologically indistinguishable under light microscopy (five populations from the temperate Eastern Nearctic and 13 populations from the subtropical and tropical zone). A range of methods was used to dissect components of variability within the complex (Bayesian inference, haplotype networks, Poisson tree processes, automatic barcode gap discovery delineations, principal components analysis and ANOVA). We found deep divergence between the temperate Eastern Nearctic E. virginicus and pantropical Echiniscus lineatus in all three genetic markers. In contrast, intraspecific genetic variation was very low, regardless of the geographical distance between the populations. Moreover, for the first time, statistical predictions of tardigrade geographical distributions were modelled. The factor determining the allopatric geographical ranges of deceptively similar species analysed in this study is most likely to be the type of climate. Our study shows that widespread tardigrade species exist, and both geographical distribution modelling and the genetic structure of populations of the pantropical E. lineatus suggest wind-mediated (aeolian) passive long-distance dispersal.
Biological interpretations of the biphasic model of ontogenetic brain–body allometry: a reply to Packard
Authors: Tsuboi Masahito 
Published: September 2019

Abstract
Allometry is a description of organismal growth. Historically, a simple power law has been used most widely to describe the rate of growth in phenotypic traits relative to the rate of growth in overall size. However, the validity of this standard practice has repeatedly been criticized. In an accompanying opinion piece, Packard reanalysed data from a recent study on brain–body ontogenetic allometry and claimed that the biphasic growth model suggested in that study was an artefact of logarithmic transformation. Based on the model selection, Packard proposed alternative hypotheses for brain–body ontogenetic allometry. Here, I examine the validity of these models by comparing empirical data on body sizes at two critical neurodevelopmental events in mammals, i.e. at birth and at the time of the peak rate of brain growth, with statistically inferred body sizes that are supposed to characterize neurodevelopmental processes. These analyses support the existence of two distinct phases of brain growth and provide weak support for Packard's uniphasic model of brain growth. This study demonstrates the importance of considering alternative models in studies of allometry, but also highlights that such models need to respect the biological theoretical context of allometry.
Atomoxetine and citalopram alter brain network organization in Parkinson’s disease
Authors: Borchert Robin J , Rittman Timothy , Rae Charlotte L , Passamonti Luca , Jones Simon P , Vatansever Deniz , Vázquez Rodríguez Patricia , Ye Zheng , Nombela Cristina , Hughes Laura E , Robbins Trevor W , Rowe James B 
Published: September 2019

AbstractParkinson’s disease has multiple detrimental effects on motor and cognitive systems in the brain. In contrast to motor deficits, cognitive impairments in Parkinson’s disease are usually not ameliorated, and can even be worsened, by dopaminergic treatments. Recent evidence has shown potential benefits from restoring other neurotransmitter deficits, including noradrenergic and serotonergic transmission. Here, we study global and regional brain network organization using task-free imaging (also known as resting-state), which minimizes performance confounds and the bias towards predetermined networks. Thirty-three patients with idiopathic Parkinson’s disease were studied three times in a double-blinded, placebo-controlled counter-balanced crossover design, following placebo, 40 mg oral atomoxetine (selective noradrenaline reuptake inhibitor) or 30 mg oral citalopram (selective serotonin reuptake inhibitor). Neuropsychological assessments were performed outside the scanner. Seventy-six controls were scanned without medication to provide normative data for comparison to the patient cohort. Graph theoretical analysis of task-free brain connectivity, with a random 500-node parcellation, was used to measure the effect of disease in placebo-treated state (versus unmedicated controls) and pharmacological intervention (drug versus placebo). Relative to controls, patients on placebo had executive impairments (reduced fluency and inhibitory control), which was reflected in dysfunctional network dynamics in terms of reduced clustering coefficient, hub degree and hub centrality. In patients, atomoxetine improved fluency in proportion to plasma concentration (P = 0.006, r2 = 0.24), and improved response inhibition in proportion to increased hub Eigen centrality (P = 0.044, r2 = 0.14). Citalopram did not improve fluency or inhibitory control, but its influence on network integration and efficiency depended on disease severity: clustering (P = 0.01, r2 = 0.22), modularity (P = 0.043, r2 = 0.14) and path length (P = 0.006, r2 = 0.25) increased in patients with milder forms of Parkinson’s disease, but decreased in patients with more advanced disease (Unified Parkinson’s Disease Rating Scale motor subscale part III &gt; 30). This study supports the use of task-free imaging of brain networks in translational pharmacology of neurodegenerative disorders. We propose that hub connectivity contributes to cognitive performance in Parkinson’s disease, and that noradrenergic treatment strategies can partially restore the neural systems supporting executive function.
Mortality after amputation in dialysis patients is high but not modified by diabetes status
Authors: Schroijen Marielle A , van Diepen Merel , Hamming Jaap F , Dekker Friedo W , Dekkers Olaf M 
Published: September 2019

AbstractBackgroundSurvival among dialysis patients with diabetes mellitus (DM) is inferior to survival of non-diabetic dialysis patients, probably due to the higher prevalence of diabetes-related comorbid conditions. One could hypothesize that these comorbid conditions also contribute to a decreased survival after amputation in diabetic patients compared with non-diabetic patients on dialysis.MethodsData were collected from the Netherlands Cooperative Study on the Adequacy of Dialysis, a multicentre, prospective cohort study in which new patients with end-stage renal disease were monitored until transplantation or death. Amputation rates (incident cases) were calculated in patients with and without DM. The primary endpoint was all-cause survival after first amputation during dialysis therapy in diabetic patients compared with non-diabetic dialysis patients with an amputation. This was formally assessed using interaction analysis (Poisson regression).ResultsDuring follow-up (mean duration 2.9 years), 50 of the 413 diabetic patients had a new amputation (12.1%), compared with 20 of 1553 non-diabetic patients (1.2%). Amputation rates/1000 person-years were 47.9 [95% confidence interval (CI) 36.3–63.2] and 4.1 (95% CI 2.7–6.4), respectively, for diabetic patients and non-diabetic patients. Amputation increased mortality risk more than 4-fold in patients without diabetes [hazard ratio (HR) 4.6 (95% CI 2.8–7.6)] as well as in patients with diabetes [HR 4.6 (95% CI 3.3–6.4)]. No formal interaction between diabetes and amputation was found (P = 0.12).ConclusionsAmputation in dialysis patients is associated with a 4-fold increased mortality risk; this mortality risk was similar for diabetes and non-diabetes patients. Importantly, the risk for amputation is 10-fold higher in DM compared with non-diabetic dialysis patients.
Post-Release Survival of Hand-Reared and Parent-Reared Mississippi Sandhill Cranes
Authors: Ellis David H. , Gee George F. , Hereford Scott G. , Olsen Glenn H. , Chisolm T. David , Nicolich Jane M. , Sullivan Kathleen A. , Thomas Nancy J. , Nagendran Meenakshi , Hatfield Jeff S. 
Published: September 2019

AbstractThe Mississippi Sandhill Crane (Grus canadensis pulla) reintroduction program is the largest crane reintroduction effort in the world. Here we report on a 4-year experiment in which we compared post-release survival rates of 56 hand-reared and 76 parent-reared Mississippi Sandhill Cranes. First-year survival was 80%. Surprisingly, hand-reared cranes survived better than parent-reared birds, and the highest survival rates were for hand-reared juveniles released in mixed cohorts with parent-reared birds. Mixing improved survival most for parent-reared birds released with hand-reared birds. These results demonstrate that hand-rearing can produce birds which survive at least as well as parent-reared birds and that improved survival results from mixing hand-reared and parent-reared birds.
Behavior, Diet, and Breeding Biology of Double-Toothed Kites at a Guatemalan Lowland Site
Authors: Schulze Mark D. , CÓrdova Jose LuÍs , Seavy Nathaniel E. , Whitacre David F. 
Published: September 2019

AbstractWe studied Double-toothed Kites (Harpagus bidentatus) in tropical lowland forest at Tikal National Park, Petén, Guatemala, documenting behavior and diet during the incubation and nestling periods. These 200-g kites are Accipiter-like in form and strikingly size-dimorphic for a kite. Modal clutch size was two, producing 0.63 fledglings per nesting attempt and 1.25 per successful nest. Nesting was largely synchronous among pairs, with hatching during the first month of the rainy season and fledging one month later. Incubation lasted 42–45 days and nestlings fledged at 29.5 days on average. A radio-tagged fledgling was fed near the nest for 35 days; 6–8 weeks after fledging it dispersed at least 10 km, presumably reaching independence. Males did not incubate or brood, and rarely fed nestlings directly. Males typically provided most but not all prey (mainly lizards) during incubation and early nestling periods. Insects in the nestling diet increased through the nestling period as females increasingly hunted, often bringing in insects. These kites hunted from perches, below and within the closed canopy of tall, mature forest, taking 60.5% insects, 38.1% lizards, and 1.4% other vertebrates; vertebrates comprised at least 75% of prey biomass. Most prey were taken from vegetation, but prey in flight also were captured. Active, adjacent nests averaged 1.35 km apart, for a maximum density estimate of 0.60 pairs km−2 and a more likely estimate of 0.33–0.50 pairs km−2 in homogeneous, favorable habitat and 0.29–0.44 pairs km−2 for Tikal National Park as a whole.
Seasonal Movements and Pelagic Habitat Use of Murres and Puffins Determined by Satellite Telemetry
Authors: Hatch Scott A. , Meyers Paul M. , Mulcahy Danial M. , Douglas David C. 
Published: September 2019

AbstractWe tracked the movements of Common Murres (Uria aalge), Thick-billed Murres (U. lomvia), and Tufted Puffins (Fratercula cirrhata) using surgically implanted satellite transmitters. From 1994–1996, we tagged 53 birds from two colonies in the Gulf of Alaska (Middleton Island and Barren Islands) and two colonies in the Chukchi Sea (Cape Thompson and Cape Lisburne). Murres and puffins ranged 100 km or farther from all colonies in summer, but most instrumented birds had abandoned breeding attempts and their movements likely differed from those of actively breeding birds. However, murres whose movements in the breeding period suggested they still had chicks to feed foraged repeatedly at distances of 50–80 km from the Chukchi colonies in 1995. We detected no differences in the foraging patterns of males and females during the breeding season, nor between Thick-billed and Common Murres from mixed colonies. Upon chick departure from the northern colonies, male murres—some believed to be tending their flightless young—drifted with prevailing currents toward Siberia, whereas most females flew directly south toward the Bering Sea. Murres from Cape Thompson and Cape Lisburne shared a common wintering area in the southeastern Bering Sea in 1995, and birds from Cape Lisburne returned to the same area in the winter of 1996. We conclude that differences in foraging conditions during summer rather than differential mortality rates in winter account for contrasting population trends previously documented in those two colonies.
Survival Rates of Cassin's and Rhinoceros Auklets at Triangle Island, British Columbia
Authors: Bertram Douglas F. , Jones Ian L. , Cooch Evan G. , Knechtel Hugh A. , Cooke Fred 
Published: September 2019

Abstract
We estimated survival of Cassin's Auklet (Ptychoramphus aleuticus) and Rhinoceros Auklet (Cerorhinca monocerata) from recapture rates during 1994–1997. For both species, a two “age”-class model provided the best fit. Estimates of local adult survival were significantly lower for Cassin's Auklet (0.672 ± 0.047) than for Rhinoceros Auklet (0.829 ± 0.095). Our estimate of survival appears lower than that required for the maintenance of a stable population of Cassin's Auklets. The available information indicates that a low survival rate and a declining population at Triangle Island are plausible, particularly given the recent large scale oceanographic changes which have occurred in the North Pacific Ocean. Nevertheless, additional mark-recapture data and indexes of population size are required to rigorously demonstrate population declines at the world's largest Cassin's Auklet colony.
Body Temperature and Resting Behavior of Greater Snow Goose Goslings in the High Arctic
Authors: Fortin Daniel , Gauthier Gilles , Larochelle Jacques 
Published: September 2019

AbstractWe examined the control of body temperature during active and resting behaviors in chicks of a large precocial bird, the Greater Snow Goose (Chen caerulescens atlantica), growing in a cold Arctic environment. Imprinted goslings from 4 to 31 days old maintained their mean (± SD) body core temperature within a narrow range around 40.6 ± 0.2°C (range: 38.7–42.2°C), independently of changes in their thermal environment. Average body temperature increased <0.4°C between 4 and 31 days of age. Hypothermia, potentially an energy-saving mechanism, was not used by active goslings. The potential for heat loss to the environment influenced the length of resting bouts in wild goslings. As environmental temperature increased, wild goslings remained sitting alone for longer periods, whereas when it decreased, brooding behavior was prolonged. The time spent huddling increased with the number of goslings involved. Body temperature during huddling bouts measured in imprinted chicks was significantly lower than during periods of activity, showing a rapid decrease averaging 0.8°C at the onset of huddling, followed by a slow recovery before activity was resumed. Thus, huddling behavior was not used as a rewarming mechanism. Greater Snow Goose goslings appear to prioritize metabolic activity by maintaining a high body temperature, despite the high energy costs that may be involved. Social thermoregulation is used to reduce the energy costs entailed by the strict maintenance of homeothermy.