bluuebunny/crossref_metadata_2025_split huggingface dataset:
Emerging roles of eraser enzymes in the dynamic control of protein ADP-ribosylation
Authors: O’Sullivan Julia , Tedim Ferreira Maria , Gagné Jean-Philippe , Sharma Ajit K. , Hendzel Michael J. , Masson Jean-Yves , Poirier Guy G. 
Published: March 2019

AbstractProtein ADP-ribosylation is essential for the regulation of several cellular pathways, enabling dynamic responses to diverse pathophysiological conditions. It is modulated through a dynamic interplay between ADP-ribose readers, writers and erasers. While ADP-ribose synthesis has been studied and reviewed extensively, ADP-ribose processing by erasing enzymes has received comparably less attention. However, major progress in the mass spectrometric identification of ADP-ribosylated residues and the biochemical characterization of ADP-ribose erasers has substantially expanded our knowledge of ADP-ribosylation dynamics. Herein, we describe recent insights into the biology of ADP-ribose erasers and discuss the intricately orchestrated cellular processes to switch off ADP-ribose-dependent mechanisms.
Structural basis for assembly of vertical single β-barrel viruses
Authors: Santos-Pérez Isaac , Charro Diego , Gil-Carton David , Azkargorta Mikel , Elortza Felix , Bamford Dennis H. , Oksanen Hanna M. , Abrescia Nicola G. A. 
Published: March 2019

AbstractThe vertical double β-barrel major capsid protein (MCP) fold, fingerprint of the PRD1-adeno viral lineage, is widespread in many viruses infecting organisms across the three domains of life. The discovery of PRD1-like viruses with two MCPs challenged the known assembly principles. Here, we present the cryo-electron microscopy (cryo-EM) structures of the archaeal, halophilic, internal membrane-containing Haloarcula californiae icosahedral virus 1 (HCIV-1) and Haloarcula hispanica icosahedral virus 2 (HHIV-2) at 3.7 and 3.8 Å resolution, respectively. Our structures reveal proteins located beneath the morphologically distinct two- and three-tower capsomers and homopentameric membrane proteins at the vertices that orchestrate the positioning of pre-formed vertical single β-barrel MCP heterodimers. The cryo-EM based structures together with the proteomics data provide insights into the assembly mechanism of this type of viruses and into those with membrane-less double β-barrel MCPs.
Enhanced antibiotic resistance development from fluoroquinolone persisters after a single exposure to antibiotic
Authors: Barrett Theresa C. , Mok Wendy W. K. , Murawski Allison M. , Brynildsen Mark P. 
Published: March 2019

AbstractBacterial persisters are able to tolerate high levels of antibiotics and give rise to new populations. Persister tolerance is generally attributed to minimally active cellular processes that prevent antibiotic-induced damage, which has led to the supposition that persister offspring give rise to antibiotic-resistant mutants at comparable rates to normal cells. Using time-lapse microscopy to monitor Escherichia coli populations following ofloxacin treatment, we find that persisters filament extensively and induce impressive SOS responses before returning to a normal appearance. Further, populations derived from fluoroquinolone persisters contain significantly greater quantities of antibiotic-resistant mutants than those from untreated controls. We confirm that resistance is heritable and that the enhancement requires RecA, SOS induction, an opportunity to recover from treatment, and the involvement of error-prone DNA polymerase V (UmuDC). These findings show that fluoroquinolones damage DNA in persisters and that the ensuing SOS response accelerates the development of antibiotic resistance from these survivors.
Electrochemical conversion of methane to ethylene in a solid oxide electrolyzer
Authors: Zhu Changli , Hou Shisheng , Hu Xiuli , Lu Jinhai , Chen Fanglin , Xie Kui 
Published: March 2019

AbstractConversion of methane to ethylene with high yield remains a fundamental challenge due to the low ethylene selectivity, severe carbon deposition and instability of catalysts. Here we demonstrate a conceptually different process of in situ electrochemical oxidation of methane to ethylene in a solid oxide electrolyzer under ambient pressure at 850 °C. The porous electrode scaffold with an in situ-grown metal/oxide interface enhances coking resistance and catalyst stability at high temperatures. The highest C2 product selectivity of 81.2% together with the highest C2 product concentration of 16.7% in output gas (12.1% ethylene and 4.6% ethane) is achieved while the methane conversion reaches as high as 41% in the initial pass. This strategy provides an optimal performance with no obvious degradation being observed after 100 h of high temperature operation and 10 redox cycles, suggesting a reliable electrochemical process for conversion of methane into valuable chemicals.
Single-molecule trapping and spectroscopy reveals photophysical heterogeneity of phycobilisomes quenched by Orange Carotenoid Protein
Authors: Squires Allison H. , Dahlberg Peter D. , Liu Haijun , Magdaong Nikki Cecil M. , Blankenship Robert E. , Moerner W. E. 
Published: March 2019

AbstractThe Orange Carotenoid Protein (OCP) is a cytosolic photosensor that is responsible for non-photochemical quenching (NPQ) of the light-harvesting process in most cyanobacteria. Upon photoactivation by blue-green light, OCP binds to the phycobilisome antenna complex, providing an excitonic trap to thermally dissipate excess energy. At present, both the binding site and NPQ mechanism of OCP are unknown. Using an Anti-Brownian ELectrokinetic (ABEL) trap, we isolate single phycobilisomes in free solution, both in the presence and absence of activated OCP, to directly determine the photophysics and heterogeneity of OCP-quenched phycobilisomes. Surprisingly, we observe two distinct OCP-quenched states, with lifetimes 0.09 ns (6% of unquenched brightness) and 0.21 ns (11% brightness). Photon-by-photon Monte Carlo simulations of exciton transfer through the phycobilisome suggest that the observed quenched states are kinetically consistent with either two or one bound OCPs, respectively, underscoring an additional mechanism for excitation control in this key photosynthetic unit.
Actomyosin contractility-dependent matrix stretch and recoil induces rapid cell migration
Authors: Wang William Y. , Davidson Christopher D. , Lin Daphne , Baker Brendon M. 
Published: March 2019

AbstractCells select from a diverse repertoire of migration strategies. Recent developments in tunable biomaterials have helped identify how extracellular matrix properties influence migration, however, many settings lack the fibrous architecture characteristic of native tissues. To investigate migration in fibrous contexts, we independently varied the alignment and stiffness of synthetic 3D fiber matrices and identified two phenotypically distinct migration modes. In contrast to stiff matrices where cells migrated continuously in a traditional mesenchymal fashion, cells in deformable matrices stretched matrix fibers to store elastic energy; subsequent adhesion failure triggered sudden matrix recoil and rapid cell translocation. Across a variety of cell types, traction force measurements revealed a relationship between cell contractility and the matrix stiffness where this migration mode occurred optimally. Given the prevalence of fibrous tissues, an understanding of how matrix structure and mechanics influences migration could improve strategies to recruit repair cells to wound sites or inhibit cancer metastasis.
Author Correction: Sculpting nanoparticle dynamics for single-bacteria-level screening and direct binding-efficiency measurement
Authors: Shi Y. Z. , Xiong S. , Zhang Y. , Chin L. K. , Chen Y.–Y. , Zhang J. B. , Zhang T. H. , Ser W. , Larsson A. , Lim S. H. , Wu J. H. , Chen T. N. , Yang Z. C. , Hao Y. L. , Liedberg B. , Yap P. H. , Wang K. , Tsai D. P. , Qiu C.-W. , Liu A. Q. 
Published: March 2019

The original version of this Article omitted the author Kuan Wang, who is from the ‘College of Biomedical Engineering, Taipei Medical University, Taipei 11031, Taiwan’ and ‘Nanyang Environment & Water Research Institute, Nanyang Technological University, Singapore 637141, Singapore.’Also, the author S.H. Lim was incorrectly given as L.S. Hoi and A. Larsson was incorrectly given as A. Larson.The “Author contributions” was amended to reflect the authorship changes. It previously read ‘Y.Z.S., C.-W.Q., and A.Q.L. jointly conceived the idea. Y.Z.S., S.X., Y.Z., J.B.Z., W.S., J.H.W., T.N.C., Z.C.Y., Y.L.H., B.L., P.H.Y., D.P.T., and C.-W.Q. performed the numerical simulations and theoretical analysis. Y.Z.S., S.X., and L.K.C. did the fabrication and experiments of particle hopping, biomolecule binding and flow cytometry. A.L. and L.S.H. did the SPR experiments. S.X., Y.Z.S., Y.Z., C.-W.Q., Y.-Y.C., L.K.C., T.H.Z., and A.Q.L. prepared the manuscript. S.X., Y.Z., C.-W.Q., and A.Q.L. supervised and coordinated all the work. All authors commented on the manuscript.’ The correct version states ‘B.L., K. W., P.H.Y.’ instead of ‘B.L., P.H.Y.’ and ‘S.H.L.’ in place of ‘L.S.H.’This has been corrected in both the PDF and HTML versions of the Article.
Room-temperature production of silver-nanofiber film for large-area, transparent and flexible surface electromagnetic interference shielding
Authors: Lin Sen , Wang Haiyang , Wu Fan , Wang Qingmin , Bai Xiaopeng , Zu Di , Song Jianan , Wang Dong , Liu Zhenglian , Li Ziwei , Tao Nian , Huang Kai , Lei Ming , Li Bo , Wu Hui 
Published: March 2019

AbstractA kind of pollution known as electromagnetic interference (EMI), which results from ubiquitous usage of various electronic communication and military radar equipment, has been receiving increasing attention recently. However, large-area EMI shielding on transparent and/or curved surfaces, including building windows, curved glass wall, and special requirements spaces (SRSs), remains hard to achieve. In this paper, a silver nanofiber (AgNF) based flexible and transparent EMI shielding film was successfully assembled via a room-temperature roll-to-roll production method. For transparent application scenario, AgNF with 89% transmittance in visible range and 1 μm thickness shows ~20 dB shielding efficiency (EMI SE). On the other hand, total shielding (>50 dB) is obtained when the thickness of AgNF increases to 10 μm, while its transmittance in visible range remains higher than 75%. Considering the facile and scale-free production technology, this material can be readily applied in large-scale, transparent, and/or SRSs EMI shielding.
A negative correlation between behavioural and physiological performance under ocean acidification and warming
Authors: Laubenstein Taryn D. , Rummer Jodie L. , McCormick Mark I. , Munday Philip L. 
Published: March 2019

AbstractMany studies have examined the average effects of ocean acidification and warming on phenotypic traits of reef fishes, finding variable, but often negative effects on behavioural and physiological performance. Yet the presence and nature of a relationship between these traits is unknown. A negative relationship between phenotypic traits could limit individual performance and even the capacity of populations to adapt to climate change. Here, we examined the relationship between behavioural and physiological performance of a juvenile reef fish under elevated CO2 and temperature in a full factorial design. Behaviourally, the response to an alarm odour was negatively affected by elevated CO2, but not elevated temperature. Physiologically, aerobic scope was significantly diminished under elevated temperature, but not under elevated CO2. At the individual level, there was no relationship between behavioural and physiological traits in the control and single-stressor treatments. However, a statistically significant negative relationship was detected between the traits in the combined elevated CO2 and temperature treatment. Our results demonstrate that trade-offs in performance between behavioural and physiological traits may only be evident when multiple climate change stressors are considered, and suggest that this negative relationship could limit adaptive potential to climate change.
Hazard potential of perovskite solar cell technology for potential implementation of “safe-by-design” approach
Authors: Bae Su-Yong , Lee Su Young , Kim Ji-wan , Umh Ha Nee , Jeong Jaeseong , Bae Seongjun , Yi Jongheop , Kim Younghun , Choi Jinhee 
Published: March 2019

AbstractThe perovskite solar cell (PSC) is a rapidly advancing solar technology with high efficiencies and low production costs. However, as the PSC contains methylammonium lead iodide (CH3NH3PbI3, MAPbI3) in the light-harvesting active layer, addressing the safety issue of PSCs is an important prerequisite for its commercialization. In this study, the potential hazards of the PSC were investigated with consideration of Pb species released from PSC using an ecotoxicity, cytotoxicity, chronic toxicity, and genotoxicity battery assay. PSC and its degradation products can cause significant toxicity, with PSC being more toxic than the individual degradation products. The order of ecotoxicity and cytotoxicity was found to be Pb2+ > PSC > PbI2 = PbO. Aquatic toxicity of PSC and its degradation products was suggested by Daphnia magna acute, chronic, and genotoxicity results. The current study highlights the non-negligible hazard potentialities of the PSC and its degradation products, as evidenced by our ecotoxicity and cytotoxicity battery assay. Our study indicates that great caution should be taken in the mass production of PSCs and could facilitate proper risk assessment. Based on our study, some considerations on the implementation of the “safe-by-design (SbD)” approach for the sustainable development of PSC technology can be formulated.
X-Ray Nanotomography of Individual Pulp Fibre Bonds Reveals the Effect of Wall Thickness on Contact Area
Authors: Sormunen T. , Ketola A. , Miettinen A. , Parkkonen J. , Retulainen E. 
Published: March 2019

AbstractFibre bonds play an essential role in various properties of paper. Much research has focused on their strength, but the determination of the actual contact area also provides a challenge. Many of the research methods rely on optical tools, which are restricted by the wavelength of light that is utilised. Novel X-ray computed tomography devices utilise X-rays in studying the inner structure of materials, and surpass the optical methods in terms of resolution, allowing detection of even smaller details and variations in distance between the fibres in the bond intersection area. X-ray nanotomography was used to image 26 individual cellulose fibre bonds made of springwood and summerwood fibres of refined bleached softwood kraft pulp. Various dimensional properties of the bonds were measured, most importantly the relative contact area (apparent contact area/intersection area), whose values showed wide variation from 6.4 to 85% with an average of 57.7%. Although the summerwood bonds had a somewhat smaller intersection and contact area than springwood bonds, there were no significant differences in the relative contact area between the bond types. This suggests that the effect of relative and absolute contact area on the strength differences between bond types seems to be minor.
Maternal smoking early in pregnancy is associated with increased risk of short stature and obesity in adult daughters
Authors: Maessen Sarah E. , Ahlsson Fredrik , Lundgren Maria , Cutfield Wayne S. , Derraik José G. B. 
Published: March 2019

AbstractWe assessed anthropometry in 22,421 adult daughters in association with their mothers’ tobacco smoking early in pregnancy (at their first antenatal visit) in Sweden, particularly their risk of short stature and obesity. Adult daughters were grouped by maternal smoking levels during pregnancy: Non-smokers (58.5%), Light smokers (24.1%; smoked 1–9 cigarettes/day), and Heavier smokers (17.4%; smoked ≥10 cigarettes/day). Anthropometry was recorded on the adult daughters at approximately 26.0 years of age. Obesity was defined as BMI ≥30 kg/m2, and short stature as height more than two standard deviations below the population mean. Daughters whose mothers were Light and Heavier smokers in early pregnancy were 0.8 cm and 1.0 cm shorter, 2.3 kg and 2.6 kg heavier, and had BMI 0.84 kg/m2 and 1.15 kg/m2 greater, respectively, than daughters of Non-smokers. The adjusted relative risk of short stature was 55% higher in women born to smokers, irrespectively of smoking levels. Maternal smoking had a dose-dependent association with obesity risk, with offspring of Heavier smokers 61% and of Light smokers 37% more likely to be obese than the daughters of Non-smokers. In conclusion, maternal smoking in pregnancy was associated with an increased risk of short stature and obesity in their adult daughters.
Use of artificial neural networks to identify the predictive factors of extracorporeal shock wave therapy treating patients with chronic plantar fasciitis
Authors: Yin Mengchen , Ma Junming , Xu Jinhai , Li Lin , Chen Guanghui , Sun Zhengwang , Liu Yujie , He Shaohui , Ye Jie , Mo Wen 
Published: March 2019

AbstractThe purpose of our study is to identify the predictive factors for a minimum clinically successful therapy after extracorporeal shock wave therapy for chronic plantar fasciitis. The demographic and clinical characteristics were evaluated. The artificial neural networks model was used to choose the significant variables and model the effect of achieving the minimum clinically successful therapy at 6-months’ follow-up. The multilayer perceptron model was selected. Higher VAS (Visual Analogue Score) when taking first steps in the morning, presence of plantar fascia spur, shorter duration of symptom had statistical significance in increasing the odd. The artificial neural networks model shows that the sensitivity of predictive factors was 84.3%, 87.9% and 61.4% for VAS, spurs and duration of symptom, respectively. The specificity 35.7%, 37.4% and 22.3% for VAS, spurs and duration of symptom, respectively. The positive predictive value was 69%, 72% and 57% for VAS, spurs and duration of symptom, respectively. The negative predictive value was 82%, 84% and 59%, for VAS, spurs and duration of symptom respectively. The area under the curve was 0.738, 0.882 and 0.520 for VAS, spurs and duration of symptom, respectively. The predictive model showed a good fitting of with an overall accuracy of 92.5%. Higher VAS symptomatized by short-duration, severer pain or plantar fascia spur are important prognostic factors for the efficacy of extracorporeal shock wave therapy. The artificial neural networks predictive model is reasonable and accurate model can help the decision-making for the application of extracorporeal shock wave therapy.
Revealing the deposition of macrophytes transported offshore: Evidence of their long-distance dispersal and seasonal aggregation to the deep sea
Authors: Kokubu Yutaka , Rothäusler Eva , Filippi Jean-Baptiste , Durieux Eric D. H. , Komatsu Teruhisa 
Published: March 2019

AbstractThe role of coastal macrophyte beds as a carbon sink is under debate. Various studies have provided global estimates of the carbon sequestration and stocks of macrophyte beds; however, the final fate of macrophyte debris exported from coastal beds remains uncertain, and must be determined in order to fully clarify the role of coastal vegetation as a carbon sink. Here we conducted bottom-trawl surveys to investigate the extensive and seasonal aggregation of exported macrophytes on the continental shelf and slope seafloor (40–1,800 m). Sunken macrophytes showed a clear seasonal trend with highest biomasses in summer. This was mainly caused by the most collected macrophyte speciesSargassum horneri. Furthermore, we used numerical simulations to verify the link between sea-surface hydrographic condition and seafloor distribution of sunken macrophytes. Our results showed thatS. horneriaccumulated beneath the Kuroshio Extension current, which is the western boundary current of the North Pacific subtropical gyre. Overall, floating macrophytes that became transported offshore by a stable sea-surface current, such as the western boundary current, constitute an organic carbon pathway from coastal waters to the deep sea. Our findings suggest that these buoyant macrophytes can act as a biological pump to enhance oceanic carbon sequestration.
Exercise-induced bronchoconstriction, temperature regulation and the role of heat shock proteins in non-asthmatic recreational marathon and half-marathon runners
Authors: Bekos Christine , Zimmermann Matthias , Unger Lukas , Janik Stefan , Mitterbauer Andreas , Koller Michael , Fritz Robert , Gäbler Christian , Didcock Jessica , Kliman Jonathan , Klepetko Walter , Ankersmit Hendrik Jan , Moser Bernhard 
Published: March 2019

AbstractExercise is the most common trigger of bronchospasm. Heat shock protein (HSP) expression was linked to asthmatic patients. The prevalence and pathophysiology of exercise-induced bronchoconstriction (EIB) in non-professional non-asthmatic runners is unknown. We sought to investigate the frequency of EIB and cytokine changes in non-professional non-asthmatic marathon and half marathoners with and without EIB. Testing was performed before the marathon (baseline), immediately post-marathon at the finish area (peak), and 2–7 days after the marathon (recovery): immunosorbent assays for measurement of HSP70, blood count analysis, spirometry and temperature measurements. We experienced a decline in FEV1 of ≥10% in 35.29% of marathon and 22.22% of half marathon runners. Runners with EIB had significantly higher HSP70 serum concentrations at baseline than those without EIB (987.4 ± 1486.7 vs. 655.6 ± 1073.9; p = 0.014). Marathoners with EIB had significantly increased WBC before participating in the competition (7.4 ± 1.7 vs. 6.0 ± 1.5; p = 0.021). After recovery we found increased HSP70 serum concentrations in marathoners with EIB compared to those without (2539.2 ± 1692.5 vs. 1237.2 ± 835.2; p = 0.032), WBC (7.6 ± 1.8 vs. 6.4 ± 1.6; p = 0.048) and PLT (273.0 ± 43.0 vs 237.2 ± 48.3; p = 0.040). At all measured skin sites skin temperatures in runners were significantly lower immediately after participating in the competition when compared to temperature before the race (skin temperature baseline vs. peak: abdominal: 33.1 ± 0.2 vs. 30.0 ± 0.4; p < 0.001; upper arm: 31.6 ± 0.2 vs. 29.4 ± 0.3; p < 0.001; upper leg: 30.7 ± 0.3 vs. 29.4 ± 0.2; p = 0.014; lower leg: 30.6 ± 1.0 vs. 30.2 ± 1.5; p = 0.007). We found a higher than expected number of non-professional athletes with EIB. HSP70 serum concentrations and elevated WBC could indicate a predisposition to EIB.
PEBAX-1657/Ag nanoparticles/7,7,8,8-tetracyanoquinodimethane complex for highly permeable composite membranes with long-term stability
Authors: Kim Minsu , Kang Sang Wook 
Published: March 2019

AbstractPoly (ether-block-amide) resin-1657 (PEBAX-1657)/silver nanoparticle (AgNPs)/7,7,8,8-tetracyanoquinodimethane (TCNQ) composite membranes were prepared for olefin/paraffin separation. The long-term performance of composite membranes can be improved by preventing the reduction of silver ions by adding Al(NO3)3 and PEBAX-1657, which has 40% amide groups and 60% ether groups, to the polymer matrix for high permeance. In this study, silver ions were reduced to form nanoparticles to which 7,7,8,8-tetracyanoquinodimethane (TCNQ, electron acceptor) was added to produce long-term olefin carriers. The surface of the AgNPs were modified using electron TCNQ to induce positive charges. The polarized surface of the AgNPs in the PEBAX-1657 permeable polymer matrix interacted with olefins. The membrane was expected to show exceptional separation performance. The results showed that the PEBAX-1657/AgNPs/TCNQ composite membrane exhibited a selectivity of 12.7 and a mixed-gas permeance of 10.2 GPU for durations longer than 76 h. The surface-activated AgNPs were characterized using infrared spectroscopy and X-ray photoelectron spectroscopy.