bluuebunny/crossref_metadata_2025_split huggingface dataset:
Differentiating lung cancer and infection based on measurements of extracellular pH with acidoCEST MRI
Authors: Lindeman Leila R. , Jones Kyle M. , High Rachel A. , Howison Christine M. , Shubitz Lisa F. , Pagel Mark D. 
Published: September 2019

AbstractLung cancer diagnosis via imaging may be confounded by the presence of indolent infectious nodules in imaging studies. This issue is pervasive in the southwestern US where coccidioidomycosis (Valley Fever) is endemic. AcidoCEST MRI is a noninvasive imaging method that quantifies the extracellular pH (pHe) of tissues in vivo, allowing tumor acidosis to be used as a diagnostic biomarker. Using murine models of lung adenocarcinoma and coccidoidomycosis, we found that average lesion pHe differed significantly between tumors and granulomas. Our study shows that acidoCEST MRI is a promising tool for improving the specificity of lung cancer diagnosis.
European spiny lobster recovery from overfishing enhanced through active restocking in Fully Protected Areas
Authors: Cau Alessandro , Bellodi Andrea , Cannas Rita , Fois Maurizio , Guidetti Paolo , Moccia Davide , Porcu Cristina , Pusceddu Antonio , Follesa Maria C. 
Published: September 2019

AbstractFully protected areas (FPAs) help preserving biodiversity and reversing the global decline of fishery resources. Stocks of the European spiny lobster Palinurus elephas (Fabr. 1787), among the most precious gourmet seafood worldwide, are currently facing a dramatic decline. Previous attempts of recovery based on fishery restrictions or active post-larval restocking in marine reserves provided unsuccessful outcomes. Here we present results of a 5-year restocking program carried through a Collaborative Fishery Research (CFR) project, in three ad-hoc established FPAs replenished using below-legal size wild juveniles. Results showed that Catch per Unit Effort (CPUE) in terms of both density and biomass burst (by ca. 300–700%) just 2 years since FPAs establishment, regardless of location. We also report tangible spillover effects (ca. 30–50% increase in density and biomass CPUE outside the FPAs) by the end of the program. Data from a 15-years lasting monitoring of a pilot FPA established in 1998, where the restocking protocol was conducted and protection kept in force once restocking ceased, demonstrated the persistence in time of restocking’ benefits. We foster that creation of FPAs assisted with local restocking under oriented CFR programs can represent an option for the recovery of European spiny lobster stocks from overfishing.
Influence of upscaling on identification of reservoir fluid properties using seismic-scale elastic constants
Authors: Li Shengjie , Wang Daxing , Zhang Mengbo 
Published: September 2019

AbstractElastic constants derived from seismic-scale measurements are often used to infer subsurface petrophysical properties based on rock-physics relationships established from either theoretic model or core-scale measurements. However, the spatial heterogeneity of rock physical properties at the local scale has a significant impact on this relation. To understand this problem, we built a scaled physical model comprised of artificial porous layers with different pore fluids. After conducting a two-dimensional marine seismic survey over the physical model, the physical modeling data ware then used to retrieve the elastic constants of the layered package. The seismic-scale results reveal that the identification of reservoir fluid properties is improved using elastic constants that is more sensitive to pore fluid properties. The results of numerical simulations show that Lamé moduli provide more insight into rock properties and pore-fluid contents than P-wave impedances, and that the relationship between the upscaled elastic constants and the effective fluid bulk moduli at the seismic scale is usually not perfectly preserved at the reservoir scale. To interpret seismic-scale elastic constants for petrophysical properties, the rock physics relationship need to be carefully calibrated. The findings will help us understand the upscaling of rock-physics transform, which will improve the accuracy of geological property predictions from seismic-scale elastic constants.
Optofluidic lens based on electrowetting liquid piston
Authors: Li Lin-Yang , Yuan Rong-Ying , Wang Jin-Hui , Li Lei , Wang Qiong-Hua 
Published: September 2019

AbstractThe conventional electrowetting lens usually has one tunable liquid-liquid (L-L) interface. The shape of L-L interface is deformed to get variable focal length due to electrowetting effect. However, contact angle saturation of the L-L interface is an unavoidable problem which prevents focal length from further changing. Here, we demonstrate an optofluidic lens based on electrowetting liquid piston. The proposed lens has two connected chambers, the piston chamber and the lens chamber to form a closed-loop fluidic system. The electrowetting liquid piston can generate clockwise and counter-clockwise liquid flows, which can make the L-L interface convex and concave. To prove the concept, we fabricate an optofluidic device whose shortest negative and positive focal lengths are ~−17.9 mm and ~18 mm with 5 mm aperture, respectively. The proposed optofluidic lens has large tunable focal length range. Widespread application of such an adaptive lens is foreseeable.
Evaluation of polypyrrole-modified bioelectrodes in a chemical absorption-bioelectrochemical reduction integrated system for NO removal
Authors: Guo Tianjiao , Zhang Chunyan , Zhao Jingkai , Ma Cunhao , Li Sujing , Li Wei 
Published: September 2019

AbstractA Chemical absorption-bioelectrochemical reduction (CABER) system is based on Chemical absorption-biological reduction (CABR) system, which aims at NO removal and has been studied in many of our previous works. In this paper, we applied polypyrrole (PPy) on the electrode of bioelectrochemical reactor (BER) of CABER system, which induced a much higher current density in the cyclic voltammetry (CV) curve for the electrode itself and better NO removal rate in the system. In addition, a Microbial Electrolysis Cell (MEC) is constructed to study its strengthening mechanism. Results shows that PPy-MEC has a greater Faraday efficiency and higher reduction rate of Fe(III)EDTA and Fe(II)EDTA-NO in the solution when compared to original Carbon MEC, which confirms the advantage of PPy-modified electrode(s) in the CABER system. The results of this study are reported for illustration of potential of CABER technology and design of low-cost high-efficiency NOx control equipment in the future.
Animal residues found on tiny Lower Paleolithic tools reveal their use in butchery
Authors: Venditti Flavia , Cristiani Emanuela , Nunziante-Cesaro Stella , Agam Aviad , Lemorini Cristina , Barkai Ran 
Published: September 2019

AbstractStone tools provide a unique window into the mode of adaptation and cognitive abilities of Lower Paleolithic early humans. The persistently produced large cutting tools (bifaces/handaxes) have long been an appealing focus of research in the reconstruction of Lower Paleolithic survival strategies, at the expenses of the small flake tools considered by-products of the stone production process rather than desired end products. Here, we use use-wear, residues and technological analyses to show direct and very early evidence of the deliberate production and use of small flakes for targeted stages of the prey butchery process at the late Lower Paleolithic Acheulian site of Revadim, Israel. We highlight the significant role of small flakes in Lower Paleolithic adaptation alongside the canonical large handaxes. Our results demonstrate the technological and cognitive flexibility of early human groups in the Levant and beyond at the threshold of the departure from Lower Paleolithic lifeways.
Transgenic Aedes aegypti Mosquitoes Transfer Genes into a Natural Population
Authors: Evans Benjamin R. , Kotsakiozi Panayiota , Costa-da-Silva Andre Luis , Ioshino Rafaella Sayuri , Garziera Luiza , Pedrosa Michele C. , Malavasi Aldo , Virginio Jair F. , Capurro Margareth L. , Powell Jeffrey R. 
Published: September 2019

AbstractIn an attempt to control the mosquito-borne diseases yellow fever, dengue, chikungunya, and Zika fevers, a strain of transgenically modified Aedes aegypti mosquitoes containing a dominant lethal gene has been developed by a commercial company, Oxitec Ltd. If lethality is complete, releasing this strain should only reduce population size and not affect the genetics of the target populations. Approximately 450 thousand males of this strain were released each week for 27 months in Jacobina, Bahia, Brazil. We genotyped the release strain and the target Jacobina population before releases began for >21,000 single nucleotide polymorphisms (SNPs). Genetic sampling from the target population six, 12, and 27–30 months after releases commenced provides clear evidence that portions of the transgenic strain genome have been incorporated into the target population. Evidently, rare viable hybrid offspring between the release strain and the Jacobina population are sufficiently robust to be able to reproduce in nature. The release strain was developed using a strain originally from Cuba, then outcrossed to a Mexican population. Thus, Jacobina Ae. aegypti are now a mix of three populations. It is unclear how this may affect disease transmission or affect other efforts to control these dangerous vectors. These results highlight the importance of having in place a genetic monitoring program during such releases to detect un-anticipated outcomes.
Feeding by Tropilaelaps mercedesae on pre- and post-capped brood increases damage to Apis mellifera colonies
Authors: Phokasem Patcharin , de Guzman Lilia I. , Khongphinitbunjong Kitiphong , Frake Amanda M. , Chantawannakul Panuwan 
Published: September 2019

AbstractTropilaelaps mercedesae parasitism can cause Apis mellifera colony mortality in Asia. Here, we report for the first time that tropilaelaps mites feed on both pre- and post-capped stages of honey bees. Feeding on pre-capped brood may extend their survival outside capped brood cells, especially in areas where brood production is year-round. In this study, we examined the types of injury inflicted by tropilaelaps mites on different stages of honey bees, the survival of adult honey bees, and level of honey bee viruses in 4th instar larvae and prepupae. The injuries inflicted on different developing honey bee stages were visualised by staining with trypan blue. Among pre-capped stages, 4th instar larvae sustained the highest number of wounds (4.6 ± 0.5/larva) while 2nd-3rd larval instars had at least two wounds. Consequently, wounds were evident on uninfested capped brood (5th-6th instar larvae = 3.91 ± 0.64 wounds; prepupae = 5.25 ± 0.73 wounds). Tropilaelaps mite infestations resulted in 3.4- and 6-fold increases in the number of wounds in 5th-6th instar larvae and prepupae as compared to uninfested capped brood, respectively. When wound-inflicted prepupae metamorphosed to white-eyed pupae, all wound scars disappeared with the exuviae. This healing of wounds contributed to the reduction of the number of wounds (≤10) observed on the different pupal stages. Transmission of mite-borne virus such as Deformed Wing Virus (DWV) was also enhanced by mites feeding on early larval stages. DWV and Black Queen Cell Virus (BQCV) were detected in all 4th instar larvae and prepupae analysed. However, viral levels were more pronounced in scarred 4th instar larvae and infested prepupae. The remarkably high numbers of wounds and viral load on scarred or infested developing honey bees may have caused significant weight loss and extensive injuries observed on the abdomen, wings, legs, proboscis and antennae of adult honey bees. Together, the survival of infested honey bees was significantly compromised. This study demonstrates the ability of tropilaelaps mites to inflict profound damage on A. mellifera hosts. Effective management approaches need to be developed to mitigate tropilaelaps mite problems.
Characterization of dystroglycan binding in adhesion of human induced pluripotent stem cells to laminin-511 E8 fragment
Authors: Sugawara Yumika , Hamada Keisuke , Yamada Yuji , Kumai Jun , Kanagawa Motoi , Kobayashi Kazuhiro , Toda Tatsushi , Negishi Yoichi , Katagiri Fumihiko , Hozumi Kentaro , Nomizu Motoyoshi , Kikkawa Yamato 
Published: September 2019

AbstractHuman induced pluripotent stem cells (hiPSCs) grow indefinitely in culture and have the potential to regenerate various tissues. In the development of cell culture systems, a fragment of laminin-511 (LM511-E8) was found to improve the proliferation of stem cells. The adhesion of undifferentiated cells to LM511-E8 is mainly mediated through integrin α6β1. However, the involvement of non-integrin receptors remains unknown in stem cell culture using LM511-E8. Here, we show that dystroglycan (DG) is strongly expressed in hiPSCs. The fully glycosylated DG is functionally active for laminin binding, and although it has been suggested that LM511-E8 lacks DG binding sites, the fragment does weakly bind to DG. We further identified the DG binding sequence in LM511-E8, using synthetic peptides, of which, hE8A5-20 (human laminin α5 2688–2699: KTLPQLLAKLSI) derived from the laminin coiled-coil domain, exhibited DG binding affinity and cell adhesion activity. Deletion and mutation studies show that LLAKLSI is the active core sequence of hE8A5-20, and that, K2696 is a critical amino acid for DG binding. We further demonstrated that hiPSCs adhere to hE8A5-20-conjugated chitosan matrices. The amino acid sequence of DG binding peptides would be useful to design substrata for culture system of undifferentiated and differentiated stem cells.
3D cell culture stimulates the secretion of in vivo like extracellular vesicles
Authors: Thippabhotla Sirisha , Zhong Cuncong , He Mei 
Published: September 2019

AbstractFor studying cellular communicationsex-vivo, a two-dimensional (2D) cell culture model is currently used as the “gold standard”. 2D culture models are also widely used in the study of RNA expression profiles from tumor cells secreted extracellular vesicles (EVs) for tumor biomarker discovery. Although the 2D culture system is simple and easily accessible, the culture environment is unable to representin vivoextracellular matrix (ECM) microenvironment. Our study observed that 2D- culture derived EVs showed significantly different profiles in terms of secretion dynamics and essential signaling molecular contents (RNAs and DNAs), when compared to the three-dimensional (3D) culture derived EVs. By performing small RNA next-generation sequencing (NGS) analysis of cervical cancer cells and their EVs compared with cervical cancer patient plasma EV-derived small RNAs, we observed that 3D- culture derived EV small RNAs differ from their parent cell small RNA profile which may indicate a specific sorting process. Most importantly, the 3D- culture derived EV small RNA profile exhibited a much higher similarity (~96%) toin vivocirculating EVs derived from cervical cancer patient plasma. However, 2D- culture derived EV small RNA profile correlated better with only their parent cells cultured in 2D. On the other hand, DNA sequencing analysis suggests that culture and growth conditions do not affect the genomic information carried by EV secretion. This work also suggests that tackling EV molecular alterations secreted into interstitial fluids can provide an alternative, non-invasive approach for investigating 3D tissue behaviors at the molecular precision. This work could serve as a foundation for building precise models employed in mimickingin vivotissue system with EVs as the molecular indicators or transporters. Such models could be used for investigating tumor biomarkers, drug screening, and understanding tumor progression and metastasis.
NMR-based newborn urine screening for optimized detection of inherited errors of metabolism
Authors: Embade Nieves , Cannet Claire , Diercks Tammo , Gil-Redondo Rubén , Bruzzone Chiara , Ansó Sara , Echevarría Lourdes Román , Ayucar M. Mercedes Martinez , Collazos Laura , Lodoso Blanca , Guerra Eneritz , Elorriaga Izaskun Asla , Kortajarena Miguel Ángel , Legorburu Alberto Pérez , Fang Fang , Astigarraga Itziar , Schäfer Hartmut , Spraul Manfred , Millet Oscar 
Published: September 2019

AbstractInborn errors of metabolism (IEMs) are rare diseases produced by the accumulation of abnormal amounts of metabolites, toxic to the newborn. When not detected on time, they can lead to irreversible physiological and psychological sequels or even demise. Metabolomics has emerged as an efficient and powerful tool for IEM detection in newborns, children, and adults with late onset. In here, we screened urine samples from a large set of neonates (470 individuals) from a homogeneous population (Basque Country), for the identification of congenital metabolic diseases using NMR spectroscopy. Absolute quantification allowed to derive a probability function for up to 66 metabolites that adequately describes their normal concentration ranges in newborns from the Basque Country. The absence of another 84 metabolites, considered abnormal, was routinely verified in the healthy newborn population and confirmed for all but 2 samples, of which one showed toxic concentrations of metabolites associated to ketosis and the other one a high trimethylamine concentration that strongly suggested an episode of trimethylaminuria. Thus, a non-invasive and readily accessible urine sample contains enough information to assess the potential existence of a substantial number (>70) of IEMs in newborns, using a single, automated and standardized 1H- NMR-based analysis.
Impedance spectroscopy for in situ and real-time observations of the effects of hydrogen on nitrile butadiene rubber polymer under high pressure
Authors: Jung Jae Kap , Jeon Sang Koo , Kim Kyu-Tae , Lee Chang Hoon , Baek Un Bong , Chung Ki Soo 
Published: September 2019

AbstractNondestructive impedance spectroscopy (IS) was developed and demonstrated to detect the effects of hydrogen on nitrile butadiene rubber exposed to hydrogen gas (H2) at high pressures up to 10 MPa. IS was applied to obtain an in situ and real-time quantification of H2 penetration into and its desorption out of rubber under high pressure. The diffusion coefficients of H2 were also obtained from the time evolution of the capacitance, which were compared with those obtained by thermal desorption gas analysis. The in situ measurements of the capacitance and the dissipation factor under various pressures during cyclic stepwise pressurization and decompression demonstrated the diffusion behaviour of H2, the phase of the rubber under high pressure, the transport properties of H2 gas, and the physicochemical interaction between H2 and the rubber. These phenomena were supported by a COMSOL simulation based on the electric current conservation equation and scanning electron microscopy (SEM) observations.
Crystal structure of zinc-α2-glycoprotein in complex with a fatty acid reveals multiple different modes of protein-lipid binding
Authors: Lau Andy M. , Zahid Henna , Gor Jayesh , Perkins Stephen J. , Coker Alun R. , McDermott Lindsay C. 
Published: September 2019

Abstract
Human zinc-α2-glycoprotein (ZAG) is a 42 kDa adipokine which regulates body fat mass and is associated with cachexia and obesity. ZAG belongs to the major histocompatibility complex class I protein family and binds long-chain polyunsaturated fatty acids in its groove formed from the α1 and α2 domains. To identify the molecular basis of its lipid-binding function, we determined the first crystal structure at 2.49 Å resolution for fatty acid-bound ZAG, where the ligand was the fluorescent 11-(dansylamino)undecanoic acid (DAUDA). The 192 kDa crystallographic asymmetric unit contained six ZAG and eight fatty acid molecules in unique conformations. Six fatty acid molecules were localised to the ZAG grooves, where their tails were bound in two distinct conformations. The carboxylate groups of three fatty acids projected out of the groove, while the fourth was hydrogen bonded with R73 inside the groove. Other ligand-residue contacts were primarily hydrophobic. A new fatty acid site was revealed for two further DAUDA molecules at the ZAG α3 domains. Following conformational changes from unbound ZAG, the α3 domains formed tetrameric β-barrel structures lined by fatty acid molecules that doubled the binding capacity of ZAG. Analytical ultracentrifugation revealed that ZAG in solution was a monomer in the absence of DAUDA, but formed small amounts of tetramers with DAUDA. By showing that ZAG binds fatty acids in different locations, we demonstrate an augmented mechanism for fatty acid binding in ZAG that is distinct from other known fatty acid binding proteins, and may be relevant to cachexia.
Hexokinase II inhibition by 3-bromopyruvate sensitizes myeloid leukemic cells K-562 to anti-leukemic drug, daunorubicin
Authors: Rai Yogesh , Yadav Priyanshu , Kumari Neeraj , Kalra Namita , Bhatt Anant Narayan 
Published: September 2019

Abstract
An increased metabolic flux towards Warburg phenotype promotes survival, proliferation and causes therapeutic resistance, in leukemic cells. Hexokinase-II (HK-II) is expressed predominantly in cancer cells, which promotes Warburg metabolic phenotype and protects the cancer cells from drug-induced apoptosis. The HK-II inhibitor 3- Bromopyruvate (3-BP) dissociates HK-II from mitochondrial complex, which leads to enhanced sensitization of leukemic cells to anti-leukemic drugs. In the present study, we analyzed the Warburg characteristics viz. HK-II expression, glucose uptake, endogenous reactive oxygen species (ROS) level of leukemic cell lines K-562 and THP-1 and then investigated if 3-BP can sensitize the leukemic cells K-562 to anti-leukemic drug Daunorubicin (DNR). We found that both K-562 and THP-1 cells have multi-fold high levels of HK-II, glucose uptake and endogenous ROS with respect to normal PBMCs. The combined treatment (CT) of 3-BP and DNR showed synergistic effect on the growth inhibition (GI) of K-562 and THP-1 cells. This growth inhibitory effect was attributed to 3-BP induced S-phase block and DNR induced G2/M block, resulted in reduced proliferation due to CT. Further, CT resulted in low HK-II level in mitochondrial fraction, high intracellular calcium and elevated apoptosis as compared with individual treatment of DNR and 3-BP. Moreover, CT caused enhanced DNA damage and hyperpolarized mitochondria, leading to cell death. Taken together, these results suggest that 3-BP synergises the anticancer effects of DNR in the chronic myeloid leukemic cell K-562, and may act as an effective adjuvant to anti-leukemic chemotherapy.
Targeting centrosome amplification, an Achilles' heel of cancer
Authors: Sabat-Pośpiech Dorota , Fabian-Kolpanowicz Kim , Prior Ian A. , Coulson Judy M. , Fielding Andrew B. 
Published: September 2019

Abstract
Due to cell-cycle dysregulation, many cancer cells contain more than the normal compliment of centrosomes, a state referred to as centrosome amplification (CA). CA can drive oncogenic phenotypes and indeed can cause cancer in flies and mammals. However, cells have to actively manage CA, often by centrosome clustering, in order to divide. Thus, CA is also an Achilles' Heel of cancer cells. In recent years, there have been many important studies identifying proteins required for the management of CA and it has been demonstrated that disruption of some of these proteins can cause cancer-specific inhibition of cell growth. For certain targets therapeutically relevant interventions are being investigated, for example, small molecule inhibitors, although none are yet in clinical trials. As the field is now poised to move towards clinically relevant interventions, it is opportune to summarise the key work in targeting CA thus far, with particular emphasis on recent developments where small molecule or other strategies have been proposed. We also highlight the relatively unexplored paradigm of reversing CA, and thus its oncogenic effects, for therapeutic gain.