bluuebunny/crossref_metadata_2025_split huggingface dataset:
Controllable water surface to underwater transition through electrowetting in a hybrid terrestrial-aquatic microrobot
Authors: Chen Yufeng , Doshi Neel , Goldberg Benjamin , Wang Hongqiang , Wood Robert J. 
Published: June 2018

AbstractSeveral animal species demonstrate remarkable locomotive capabilities on land, on water, and under water. A hybrid terrestrial-aquatic robot with similar capabilities requires multimodal locomotive strategies that reconcile the constraints imposed by the different environments. Here we report the development of a 1.6 g quadrupedal microrobot that can walk on land, swim on water, and transition between the two. This robot utilizes a combination of surface tension and buoyancy to support its weight and generates differential drag using passive flaps to swim forward and turn. Electrowetting is used to break the water surface and transition into water by reducing the contact angle, and subsequently inducing spontaneous wetting. Finally, several design modifications help the robot overcome surface tension and climb a modest incline to transition back onto land. Our results show that microrobots can demonstrate unique locomotive capabilities by leveraging their small size, mesoscale fabrication methods, and surface effects.
Southern Hemisphere westerlies as a driver of the early deglacial atmospheric CO2 rise
Authors: Menviel L. , Spence P. , Yu J. , Chamberlain M. A. , Matear R. J. , Meissner K. J. , England M. H. 
Published: June 2018

AbstractThe early part of the last deglaciation is characterised by a ~40 ppm atmospheric CO2 rise occurring in two abrupt phases. The underlying mechanisms driving these increases remain a subject of intense debate. Here, we successfully reproduce changes in CO2, δ13C and Δ14C as recorded by paleo-records during Heinrich stadial 1 (HS1). We show that HS1 CO2 increase can be explained by enhanced Southern Ocean upwelling of carbon-rich Pacific deep and intermediate waters, resulting from intensified Southern Ocean convection and Southern Hemisphere (SH) westerlies. While enhanced Antarctic Bottom Water formation leads to a millennial CO2 outgassing, intensified SH westerlies induce a multi-decadal atmospheric CO2 rise. A strengthening of SH westerlies in a global eddy-permitting ocean model further supports a multi-decadal CO2 outgassing from the Southern Ocean. Our results highlight the crucial role of SH westerlies in the global climate and carbon cycle system with important implications for future climate projections.
The mitochondrial DNA polymerase gamma degrades linear DNA fragments precluding the formation of deletions
Authors: Nissanka Nadee , Bacman Sandra R. , Plastini Melanie J. , Moraes Carlos T. 
Published: June 2018

AbstractDouble-strand breaks in the mitochondrial DNA (mtDNA) result in the formation of linear fragments that are rapidly degraded. However, the identity of the nuclease(s) performing this function is not known. We found that the exonuclease function of the mtDNA polymerase gamma (POLG) is required for this rapid degradation of mtDNA fragments. POLG is recruited to linearized DNA fragments in an origin of replication-independent manner. Moreover, in the absence of POLG exonuclease activity, the prolonged existence of mtDNA linear fragments leads to increased levels of mtDNA deletions, which have been previously identified in the mutator mouse, patients with POLG mutations and normal aging.
Direct visualization of current-induced spin accumulation in topological insulators
Authors: Liu Yang , Besbas Jean , Wang Yi , He Pan , Chen Mengji , Zhu Dapeng , Wu Yang , Lee Jong Min , Wang Lan , Moon Jisoo , Koirala Nikesh , Oh Seongshik , Yang Hyunsoo 
Published: June 2018

AbstractCharge-to-spin conversion in various materials is the key for the fundamental understanding of spin-orbitronics and efficient magnetization manipulation. Here we report the direct spatial imaging of current-induced spin accumulation at the channel edges of Bi2Se3 and BiSbTeSe2 topological insulators as well as Pt by a scanning photovoltage microscope at room temperature. The spin polarization is along the out-of-plane direction with opposite signs for the two channel edges. The accumulated spin direction reverses sign upon changing the current direction and the detected spin signal shows a linear dependence on the magnitude of currents, indicating that our observed phenomena are current-induced effects. The spin Hall angle of Bi2Se3, BiSbTeSe2, and Pt is determined to be 0.0085, 0.0616, and 0.0085, respectively. Our results open up the possibility of optically detecting the current-induced spin accumulations, and thus point towards a better understanding of the interaction between spins and circularly polarized light.
Discovery of ZrCoBi based half Heuslers with high thermoelectric conversion efficiency
Authors: Zhu Hangtian , He Ran , Mao Jun , Zhu Qing , Li Chunhua , Sun Jifeng , Ren Wuyang , Wang Yumei , Liu Zihang , Tang Zhongjia , Sotnikov Andrei , Wang Zhiming , Broido David , Singh David J. , Chen Gang , Nielsch Kornelius , Ren Zhifeng 
Published: June 2018

AbstractThermoelectric materials are capable of converting waste heat into electricity. The dimensionless figure-of-merit (ZT), as the critical measure for the material’s thermoelectric performance, plays a decisive role in the energy conversion efficiency. Half-Heusler materials, as one of the most promising candidates for thermoelectric power generation, have relatively low ZTs compared to other material systems. Here we report the discovery of p-type ZrCoBi-based half-Heuslers with a record-high ZT of ∼1.42 at 973 K and a high thermoelectric conversion efficiency of ∼9% at the temperature difference of ∼500 K. Such an outstanding thermoelectric performance originates from its unique band structure offering a high band degeneracy (Nv) of 10 in conjunction with a low thermal conductivity benefiting from the low mean sound velocity (vm ∼2800 m s−1). Our work demonstrates that ZrCoBi-based half-Heuslers are promising candidates for high-temperature thermoelectric power generation.
From the betweenness centrality in street networks to structural invariants in random planar graphs
Authors: Kirkley Alec , Barbosa Hugo , Barthelemy Marc , Ghoshal Gourab 
Published: June 2018

AbstractThe betweenness centrality, a path-based global measure of flow, is a static predictor of congestion and load on networks. Here we demonstrate that its statistical distribution is invariant for planar networks, that are used to model many infrastructural and biological systems. Empirical analysis of street networks from 97 cities worldwide, along with simulations of random planar graph models, indicates the observed invariance to be a consequence of a bimodal regime consisting of an underlying tree structure for high betweenness nodes, and a low betweenness regime corresponding to loops providing local path alternatives. Furthermore, the high betweenness nodes display a non-trivial spatial clustering with increasing spatial correlation as a function of the edge-density. Our results suggest that the spatial distribution of betweenness is a more accurate discriminator than its statistics for comparing static congestion patterns and its evolution across cities as demonstrated by analyzing 200 years of street data for Paris.
Induction of neutralizing antibody response against koala retrovirus (KoRV) and reduction in viral load in koalas following vaccination with recombinant KoRV envelope protein
Authors: Olagoke O , Miller D , Hemmatzadeh F , Stephenson T , Fabijan J , Hutt P , Finch S , Speight N , Timms P 
Published: June 2018

AbstractKoala retrovirus (KoRV) infects the majority of Australia’s koalas (Phascolarctos cinereus) and has been linked to several life-threatening diseases such as lymphoma and leukemia, as well as Chlamydia and thus poses a threat to the continued survival of this species. While quarantine and antiretroviral drug treatment are possible control measures, they are impractical, leaving vaccination as the only realistic option. In this study, we examined the effect of a recombinant envelope protein-based anti-KoRV vaccine in two groups of South Australian koalas: KoRV infected or KoRV free. We report a successful vaccination response in the koalas with no vaccine-associated side effects. The vaccine induced a significant humoral immune response as well as the production of neutralizing antibodies in both groups of koalas. We also identified B-cell epitopes that were differentially recognized in KoRV-infected versus KoRV-free koalas following vaccination. Importantly, we also showed that vaccination had a therapeutic effect on koalas infected exogenously with KoRV by reducing their circulating viral load. Together, this study highlights the possibility of successfully developing a vaccine against KoRV infection in koalas.
High Modularity Creates Scaling Laws
Authors: Grindrod Peter , Higham Desmond J. 
Published: June 2018

AbstractScaling laws have been observed in many natural and engineered systems. Their existence can give useful information about the growth or decay of one quantitative feature in terms of another. For example, in the field of city analytics, it is has been fruitful to compare some urban attribute, such as energy usage or wealth creation, with population size. In this work, we use network science and dynamical systems perspectives to explain that the observed scaling laws, and power laws in particular, arise naturally when some feature of a complex system is measured in terms of the system size. Our analysis is based on two key assumptions that may be posed in graph theoretical terms. We assume (a) that the large interconnection network has a well-defined set of communities and (b) that the attribute under study satisfies a natural continuity-type property. We conclude that precise mechanistic laws are not required in order to explain power law effects in complex systems—very generic network-based rules can reproduce the behaviors observed in practice. We illustrate our results using Twitter interaction between accounts geolocated to the city of Bristol, UK.
A novel high-throughput method for kinetic characterisation of anaerobic bioproduction strains, applied to Clostridium kluyveri
Authors: Candry Pieter , Van Daele Timothy , Denis Kyrina , Amerlinck Youri , Andersen Stephen J. , Ganigué Ramon , Arends Jan B. A. , Nopens Ingmar , Rabaey Korneel 
Published: June 2018

AbstractHexanoic acid (HA), also called caproic acid, can be used as an antimicrobial agent and as a precursor to various chemicals, such as fuels, solvents and fragrances. HA can be produced from ethanol and acetate by the mesophilic anaerobic bacterium Clostridium kluyveri, via two successive elongation steps over butyrate. A high-throughput anaerobic growth curve technique was coupled to a data analysis framework to assess growth kinetics for a range of substrate and product concentrations. Using this method, growth rates and several kinetic parameters were determined for C. kluyveri. A maximum growth rate (µmax) of 0.24 ± 0.01 h−1 was found, with a half-saturation index for acetic acid (KS,AA) of 3.8 ± 0.9 mM. Inhibition by butyric acid occurred at of 124.7 ± 5.7 mM (KI,BA), while the final product, HA, linearly inhibited growth with complete inhibition above 91.3 ± 10.8 mM (KHA of 10.9*10−3 ± 1.3*10−3 mM−1) at pH = 7, indicating that the hexanoate anion also exerts toxicity. These parameters were used to create a dynamic mass-balance model for bioproduction of HA. By coupling data collection and analysis to this modelling framework, we have produced a powerful tool to assess the kinetics of anaerobic micro-organisms, demonstrated here with C. kluyveri, in order further explore the potential of micro-organisms for chemicals production.
Confined photo-release of nitric oxide with simultaneous two-photon fluorescence tracking in a cellular system
Authors: Thomsen Hanna , Marino Nino , Conoci Sabrina , Sortino Salvatore , Ericson Marica B. 
Published: June 2018

AbstractNitric oxide (NO) is a key signaling molecule in biological systems. New tools are required to therapeutically modulate NO levels with confined precision. This study explores the photoactivatable properties of an NO releasing compound (CPA), based on cupferron O-alkylated with an anthracene derivative. Upon light stimulation, CPA uncages two species: cupferron, which liberates NO, and an anthrylmethyl carbocation, which evolves into a fluorescent reporter. Proof-of-principle is demonstrated using one- and two-photon excitation (1PE and 2PE) in a cellular system (A431 cells). It was found that 1PE induces cell toxicity, while 2PE does not. Since 1PE using UV light is more likely to generate cellular photodamage, the cell toxicity observed using 1PE is most likely a combinatory effect of NO release and other UV-induced damage, which should be subject to further investigation. On the other hand, absence of phototoxicity using 2PE suggests that NO alone is not cytotoxic. This leads to the conclusion that the concept of 2PE photorelease of NO from CPA enable opportunities for biological studies of NO signaling with confined precision of NO release with minimal cytotoxicity.
Noise-induced stabilization and fixation in fluctuating environment
Authors: Meyer Immanuel , Shnerb Nadav M. 
Published: June 2018

AbstractThe dynamics of a two-species community of N competing individuals are considered, with an emphasis on the role of environmental variations that affect coherently the fitness of entire populations. The chance of fixation of a mutant (or invading) population is calculated as a function of its mean relative fitness, the amplitude of fitness variations and their typical duration. We emphasize the distinction between the case of pairwise competition and the case of global competition; in the latter a noise-induced stabilization mechanism yields a higher chance of fixation for a single mutant. This distinction becomes dramatic in the weak selection regime, where the chance of fixation for a single deleterious mutant is an N-independent constant for global competition and decays like (ln N)−1 in the pairwise competition case. A Wentzel-Kramers-Brillouin (WKB) technique yields a general formula for the chance of fixation of a deleterious mutant in the strong selection regime. The possibility of long-term persistence of large [$${\mathscr{O}}$$
O
(N)] suboptimal (and extinction-prone) populations is discussed, as well as its relevance to stochastic tunneling between fitness peaks.
Amorphous Carbon Dots and their Remarkable Ability to Detect 2,4,6-Trinitrophenol
Authors: Siddique Abu Bakar , Pramanick Ashit Kumar , Chatterjee Subrata , Ray Mallar 
Published: June 2018

AbstractApparently mundane, amorphous nanostructures of carbon have optical properties which are as exotic as their crystalline counterparts. In this work we demonstrate a simple and inexpensive mechano-chemical method to prepare bulk quantities of self-passivated, amorphous carbon dots. Like the graphene quantum dots, the water soluble, amorphous carbon dots too, exhibit excitation-dependent photoluminescence with very high quantum yield (~40%). The origin and nature of luminescence in these high entropy nanostructures are well understood in terms of the abundant surface traps. The photoluminescence property of these carbon dots is exploited to detect trace amounts of the nitro-aromatic explosive — 2,4,6-trinitrophenol (TNP). The benign nanostructures can selectively detect TNP over a wide range of concentrations (0.5 to 200 µM) simply by visual inspection, with a detection limit of 0.2 µM, and consequently outperform nearly all reported TNP sensor materials.
Vegetation succession influences soil carbon sequestration in coastal alkali-saline soils in southeast China
Authors: Li Niu , Shao Tianyun , Zhu Tingshuo , Long Xiaohua , Gao Xiumei , Liu Zhaopu , Shao Hongbo , Rengel Zed 
Published: June 2018

AbstractThe area of saline soils accounts for 8% of the earth’s surface, making these soils an important terrestrial carbon sink. Soil organic carbon (SOC), microbial biomass carbon (MBC), dissolved organic carbon (DOC), soil enzyme activity, and soil bacterial abundance and biodiversity were measured in four successive coastal tidal flat ecosystems representing: bare saline soil (BS), Suaeda glauca land (SL), Imperata cylindrica grassland (IG), and Jerusalem artichoke field (JF). A decrease in soil salt content resulted in increased SOC content. With vegetation succession, MBC and DOC concentrations showed a positive trend, and activities of soil urease, catalase, invertase and alkaline phosphatase increased. A next-generation, Illumina-based sequencing approach showed that Proteobacteria, Acidobacteria, Chloroflexi, Bacteroidetes, Gemmatimonadetes, Actinobacteria, Nitrospirae and Planctomycetes were the dominant bacterial communities (a total of 597 taxa were detected, and 27 genera showed significant differences among the vegetation communities). Bacterial diversity at two soil depths was enhanced with the succession of vegetation ecosystems, with the increases in operational taxonomic units (OTUs) and the Shannon and Chao1 indices ranked in the order: JF > IG > SL > BS. The SOC and C/N were the most determinant factors influencing diversity of bacterial communities in the succession ecosystems.
Chair Heterogeneity Index: Describing the dose heterogeneity inside the tumor volume where there is a boost volume
Authors: Mu Jinming , Xi Dan , Ding Yun , Gu Wendong , Li Qilin 
Published: June 2018

AbstractIn this report, Chair Heterogeneity Index (CHI) was introduced to assess the dose heterogeneity inside the target with a boost volume. CHI was defined by dividing (V
Rx
− V
Dl
) by (V
Dm
− V
Dh
): V
Rx
, V
Dl
, V
Dm
and V
Dh
were four points selected from the target cumulative dose volume histogram curve. The effectiveness of CHI was validated by assessing the treatment plans for nasopharyngeal cancer (NPC, 12 cases), breast cancer after breast-conserving-surgery (BC, 10 cases), and stereotactic radiosurgery after whole brain irradiation (SRS, 9 cases). Our results indicate that both CHI and HI of the target can distinguish Volumetric Modulated Arc Therapy (VMAT) from Intensity Modulated Radiation Therapy (IMRT, p < 0.05) while the mean differences in CHI (NPC 1.16, BC 1.19 and SRS 3.3) were larger than those in HI (NPC 0.03, BC 0.02 and SRS 0.02). In addition, CHI of the combination volume (the target minus the boost) were statistically higher in VMAT than IMRT in all three kinds of cancer. In conclusion, CHI was effective in assessing the dose heterogeneity inside a target containing a boost volume.
Water immobilization by glass microspheres affects biological activity
Authors: Marangoni A. G. , Al-Abdul-Wahid M. S. , Nicholson R. , Roma A. , Gravelle A. J. , De Souza J. , Barbut S. , Spagnuolo P. A. 
Published: June 2018

AbstractWe recently reported that the water holding capacity of myofibrillar protein hydrogels could be increased upon addition of small amounts of microparticles, particularly glass microspheres. Glass microspheres were found to decrease the spin-spin relaxation time (T2) of water protons in the gels, which was interpreted as enhanced water binding by the glass. We were thus interested in determining whether the observed effects on water proton relaxation were a direct consequence of water-glass interactions. Here we show how glass microspheres reduce the mobility of pure water, reflected in large decreases in the T2 of water protons, decreases in the self-diffusion coefficient of water molecules, a lower water activity, and strengthening of O-H bonds. Even though glass is considered an inert material, glass microspheres were shown to inhibit the growth of human embryonic kidney cells, and stimulate or inhibit the growth of leukemia and monocytic lymphoma cells in vitro, depending on dose and time. The germination of alfalfa seeds and the growth of E.coli cells were also inhibited upon exposure to glass microspheres. This work indicates that the properties and behavior of materials, even ones considered inert, can be affected by their size. These observations suggest possible toxicological consequences of exposure to microparticles, but also open us possibilities to affect cellular/organism function via modulation of macromolecular hydration.
A taxonomic signature of obesity in a large study of American adults
Authors: Peters Brandilyn A. , Shapiro Jean A. , Church Timothy R. , Miller George , Trinh-Shevrin Chau , Yuen Elizabeth , Friedlander Charles , Hayes Richard B. , Ahn Jiyoung 
Published: June 2018

AbstractAnimal models suggest that gut microbiota contribute to obesity; however, a consistent taxonomic signature of obesity has yet to be identified in humans. We examined whether a taxonomic signature of obesity is present across two independent study populations. We assessed gut microbiome from stool for 599 adults, by 16S rRNA gene sequencing. We compared gut microbiome diversity, overall composition, and individual taxon abundance for obese (BMI ≥ 30 kg/m2), overweight (25 ≤ BMI < 30), and healthy-weight participants (18.5 ≤ BMI < 25). We found that gut species richness was reduced (p = 0.04), and overall composition altered (p = 0.04), in obese (but not overweight) compared to healthy-weight participants. Obesity was characterized by increased abundance of class Bacilli and its families Streptococcaceae and Lactobacillaceae, and decreased abundance of several groups within class Clostridia, including Christensenellaceae, Clostridiaceae, and Dehalobacteriaceae (q < 0.05). These findings were consistent across two independent study populations. When random forest models were trained on one population and tested on the other as well as a previously published dataset, accuracy of obesity prediction was good (~70%). Our large study identified a strong and consistent taxonomic signature of obesity. Though our study is cross-sectional and causality cannot be determined, identification of microbes associated with obesity can potentially provide targets for obesity prevention and treatment.
Optically-Monitored Nanopore Fabrication Using a Focused Laser Beam
Authors: Gilboa Tal , Zrehen Adam , Girsault Arik , Meller Amit 
Published: June 2018

AbstractSolid-state nanopores (ssNPs) are extremely versatile single-molecule sensors and their potential have been established in numerous biomedical applications. However, the fabrication of ssNPs remains the main bottleneck to their widespread use. Herein, we introduce a rapid and localizable ssNPs fabrication method based on feedback-controlled optical etching. We show that a focused blue laser beam irreversibly etches silicon nitride (SiNx) membranes in solution. Furthermore, photoluminescence (PL) emitted from the SiNx is used to monitor the etching process in real-time, hence permitting rate adjustment. Transmission electron microscopy (TEM) images of the etched area reveal an inverted Gaussian thickness profile, corresponding to the intensity point spread function of the laser beam. Continued laser exposure leads to the opening of a nanopore, which can be controlled to reproducibly fabricate nanopores of different sizes. The optically-formed ssNPs exhibit electrical noise on par with TEM-drilled pores, and translocate DNA and proteins readily. Notably, due to the localized thinning, the laser-drilled ssNPs exhibit highly suppressed background PL and improved spatial resolution. Given the total control over the nanopore position, this easily implemented method is ideally suited for electro-optical sensing and opens up the possibility of fabricating large nanopore arrays in situ.