bluuebunny/crossref_metadata_2025_split huggingface dataset:
Mkk4 and Mkk7 are important for retinal development and axonal injury-induced retinal ganglion cell death
Authors: Syc-Mazurek Stephanie B. , Rausch Rebecca L. , Fernandes Kimberly A. , Wilson Michael P. , Libby Richard T. 
Published: October 2018

AbstractThe mitogen-activated protein kinase (MAPK) pathway has been shown to be involved in both neurodevelopment and neurodegeneration. c-Jun N-terminal kinase (JNK), a MAPK important in retinal development and after optic nerve crush injury, is regulated by two upstream kinases: MKK4 and MKK7. The specific requirements of MKK4 and MKK7 in retinal development and retinal ganglion cell (RGC) death after axonal injury, however, are currently undefined. Optic nerve injury is an important insult in many neurologic conditions including traumatic, ischemic, inflammatory, and glaucomatous optic neuropathies. Mice deficient in Mkk4, Mkk7, and both Mkk4 and Mkk7 were generated. Immunohistochemistry was used to study the distribution and structure of retinal cell types and to assess RGC survival after optic nerve injury (mechanical controlled optic nerve crush (CONC)). Adult Mkk4- and Mkk7-deficient retinas had all retinal cell types, and with the exception of small areas of disrupted photoreceptor lamination in Mkk4-deficient mice, the retinas of both mutants were grossly normal. Deficiency of Mkk4 or Mkk7 reduced JNK signaling in RGCs after axonal injury and resulted in a significantly greater percentage of surviving RGCs 35 days after CONC as compared to wild-type controls (Mkk4: 51.5%, Mkk7: 29.1%, WT: 15.2%; p < 0.001). Combined deficiency of Mkk4 and Mkk7 caused failure of optic nerve formation, irregular retinal axonal trajectories, disruption of retinal lamination, clumping of RGC bodies, and dendritic fasciculation of dopaminergic amacrine cells. These results suggest that MKK4 and MKK7 may serve redundant and unique roles in molecular signaling important for retinal development and injury response following axonal insult.
Leptin in depression: a potential therapeutic target
Authors: Ge Tongtong , Fan Jie , Yang Wei , Cui Ranji , Li Bingjin 
Published: October 2018

AbstractLeptin, produced and secreted by white adipose tissue, plays a critical role in regulating body weight, food intake, and energy metabolism. Recently, several studies have identified an underlying role for leptin in regulation of mood and cognition via regulation of synaptic changes in the brain that have been associated with antidepressant-like actions. Brain neural plasticity occurs in response to a range of intrinsic and extrinsic stimuli, including those that may mediate the effects of antidepressants. Neural plasticity theories of depression are thought to explain multiple aspects of depression and the effects of antidepressants. It is also well documented that leptin has effects on neural plasticity. This review summarizes the recent literature on the role of leptin in neural plasticity in order to elaborate the possible mechanism of leptin’s antidepressant-like effects. Recent findings provide new insights into the underlying mechanisms of neural plasticity in depression. Leptin may influence these mechanisms and consequently constitute a possible target for novel therapeutic approaches to the treatment of depression.
Distinct functional elements for outer-surface anti-interference and inner-wall ion gating of nanochannels
Authors: Gao Pengcheng , Ma Qun , Ding Defang , Wang Dagui , Lou Xiaoding , Zhai Tianyou , Xia Fan 
Published: October 2018

AbstractOver the decades, widespread advances have been achieved on nanochannels, including nanochannel-based DNA sequencing, single-molecule detection, smart sensors, and energy transfer and storage. However, most interest has been focused on the contribution from the functional elements (FEs) at the inner wall (IW) of nanochannels, whereas little attention has been paid to the contribution from the FEs at the nanochannels’ outer surface (OS). Herein, we achieve explicit partition of FEOS and FEIW based on accurate regional-modification of OS and IW. The FEIW are served for ionic gating, and the chosen FEOS (hydrophobic or charged) are served for blocking interference molecules into the nanochannels, decreasing the false signals for the ionic gating in complex environments. Furthermore, we define a composite factor, areas of a radar map, to evaluate the FEOS performance for blocking interference molecules.
Non-resonant light scattering in dispersions of 2D nanosheets
Authors: Harvey Andrew , Backes Claudia , Boland John B. , He Xiaoyun , Griffin Aideen , Szydlowska Beata , Gabbett Cian , Donegan John F. , Coleman Jonathan N. 
Published: October 2018

AbstractExtinction spectra of nanomaterial suspensions can be dominated by light scattering, hampering quantitative spectral analysis. No simple models exist for the wavelength-dependence of the scattering coefficients in suspensions of arbitrary-sized, high-aspect-ratio nanoparticles. Here, suspensions of BN, talc, GaS, Ni(OH)2, Mg(OH)2 and Cu(OH)2 nanosheets are used to explore non-resonant scattering in wide-bandgap 2D nanomaterials. Using an integrating sphere, scattering coefficient (σ) spectra were measured for a number of size-selected fractions for each nanosheet type. Generally, σ scales as a power-law with wavelength in the non-resonant regime: σ(λ)∝[λ/〈L〉]−m, where 〈L〉 is the mean nanosheet length. For all materials, the scattering exponent, m, forms a master-curve, transitioning from m = 4 to m = 2, as the characteristic nanosheet area increases, indicating a transition from Rayleigh to van der Hulst scattering. In addition, once material density and refractive index are factored out, the proportionality constant relating σ to [λ/〈L〉]−m, also forms a master-curve when plotted versus 〈L〉.
Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
Authors: Kindgren Peter , Ard Ryan , Ivanov Maxim , Marquardt Sebastian 
Published: October 2018

AbstractMost DNA in the genomes of higher organisms does not encode proteins, yet much is transcribed by RNA polymerase II (RNAPII) into long non-coding RNAs (lncRNAs). The biological significance of most lncRNAs is largely unclear. Here, we identify a lncRNA (SVALKA) in a cold-sensitive region of the Arabidopsis genome. Mutations in SVALKA affect CBF1 expression and freezing tolerance. RNAPII read-through transcription of SVALKA results in a cryptic lncRNA overlapping CBF1 on the antisense strand, termed asCBF1. Our molecular dissection reveals that CBF1 is suppressed by RNAPII collision stemming from the SVALKA-asCBF1 lncRNA cascade. The SVALKA-asCBF1 cascade provides a mechanism to tightly control CBF1 expression and timing that could be exploited to maximize freezing tolerance with mitigated fitness costs. Our results provide a compelling example of local gene regulation by lncRNA transcription having a profound impact on the ability of plants to appropriately acclimate to challenging environmental conditions.
Metasurface eyepiece for augmented reality
Authors: Lee Gun-Yeal , Hong Jong-Young , Hwang SoonHyoung , Moon Seokil , Kang Hyeokjung , Jeon Sohee , Kim Hwi , Jeong Jun-Ho , Lee Byoungho 
Published: October 2018

AbstractRecently, metasurfaces composed of artificially fabricated subwavelength structures have shown remarkable potential for the manipulation of light with unprecedented functionality. Here, we first demonstrate a metasurface application to realize a compact near-eye display system for augmented reality with a wide field of view. A key component is a see-through metalens with an anisotropic response, a high numerical aperture with a large aperture, and broadband characteristics. By virtue of these high-performance features, the metalens can overcome the existing bottleneck imposed by the narrow field of view and bulkiness of current systems, which hinders their usability and further development. Experimental demonstrations with a nanoimprinted large-area see-through metalens are reported, showing full-color imaging with a wide field of view and feasibility of mass production. This work on novel metasurface applications shows great potential for the development of optical display systems for future consumer electronics and computer vision applications.
Short-chain ketone production by engineered polyketide synthases in Streptomyces albus
Authors: Yuzawa Satoshi , Mirsiaghi Mona , Jocic Renee , Fujii Tatsuya , Masson Fabrice , Benites Veronica T. , Baidoo Edward E. K. , Sundstrom Eric , Tanjore Deepti , Pray Todd R. , George Anthe , Davis Ryan W. , Gladden John M. , Simmons Blake A. , Katz Leonard , Keasling Jay D. 
Published: October 2018

AbstractMicrobial production of fuels and commodity chemicals has been performed primarily using natural or slightly modified enzymes, which inherently limits the types of molecules that can be produced. Type I modular polyketide synthases (PKSs) are multi-domain enzymes that can produce unique and diverse molecular structures by combining particular types of catalytic domains in a specific order. This catalytic mechanism offers a wealth of engineering opportunities. Here we report engineered microbes that produce various short-chain (C5–C7) ketones using hybrid PKSs. Introduction of the genes into the chromosome of Streptomyces albus enables it to produce >1 g · l−1 of C6 and C7 ethyl ketones and several hundred mg · l−1 of C5 and C6 methyl ketones from plant biomass hydrolysates. Engine tests indicate these short-chain ketones can be added to gasoline as oxygenates to increase the octane of gasoline. Together, it demonstrates the efficient and renewable microbial production of biogasolines by hybrid enzymes.
The impact of Arctic sea ice loss on mid-Holocene climate
Authors: Park Hyo-Seok , Kim Seong-Joong , Seo Kyong-Hwan , Stewart Andrew L. , Kim Seo-Yeon , Son Seok-Woo 
Published: October 2018

AbstractMid-Holocene climate was characterized by strong summer solar heating that decreased Arctic sea ice cover. Motivated by recent studies identifying Arctic sea ice loss as a key driver of future climate change, we separate the influences of Arctic sea ice loss on mid-Holocene climate. By performing idealized climate model perturbation experiments, we show that Arctic sea ice loss causes zonally asymmetric surface temperature responses especially in winter: sea ice loss warms North America and the North Pacific, which would otherwise be much colder due to weaker winter insolation. In contrast, over East Asia, sea ice loss slightly decreases the temperature in early winter. These temperature responses are associated with the weakening of mid-high latitude westerlies and polar stratospheric warming. Sea ice loss also weakens the Atlantic meridional overturning circulation, although this weakening signal diminishes after 150–200 years of model integration. These results suggest that mid-Holocene climate changes should be interpreted in terms of both Arctic sea ice cover and insolation forcing.
Structural insights into the π-π-π stacking mechanism and DNA-binding activity of the YEATS domain
Authors: Klein Brianna J. , Vann Kendra R. , Andrews Forest H. , Wang Wesley W. , Zhang Jibo , Zhang Yi , Beloglazkina Anastasia A. , Mi Wenyi , Li Yuanyuan , Li Haitao , Shi Xiaobing , Kutateladze Andrei G. , Strahl Brian D. , Liu Wenshe R. , Kutateladze Tatiana G. 
Published: October 2018

AbstractThe YEATS domain has been identified as a reader of histone acylation and more recently emerged as a promising anti-cancer therapeutic target. Here, we detail the structural mechanisms for π-π-π stacking involving the YEATS domains of yeast Taf14 and human AF9 and acylated histone H3 peptides and explore DNA-binding activities of these domains. Taf14-YEATS selects for crotonyllysine, forming π stacking with both the crotonyl amide and the alkene moiety, whereas AF9-YEATS exhibits comparable affinities to saturated and unsaturated acyllysines, engaging them through π stacking with the acyl amide. Importantly, AF9-YEATS is capable of binding to DNA, whereas Taf14-YEATS is not. Using a structure-guided approach, we engineered a mutant of Taf14-YEATS that engages crotonyllysine through the aromatic-aliphatic-aromatic π stacking and shows high selectivity for the crotonyl H3K9 modification. Our findings shed light on the molecular principles underlying recognition of acyllysine marks and reveal a previously unidentified DNA-binding activity of AF9-YEATS.
Plasmonic Pt nanoparticles—TiO2 hierarchical nano-architecture as a visible light photocatalyst for water splitting
Authors: Qin Lipei , Wang Guojing , Tan Yiwei 
Published: October 2018

AbstractVisible light-driven water splitting (VLWS) into hydrogen and oxygen is attractive and depends on efficient photocatalysts. Herein, we demonstrate the first exploration of the capability to control the morphology of nanostructured TiO2 in conjunction with the choice of a suitable plasmonic metal (PM) to fabricate novel photocatalysts that are capable of harvesting visible light for more efficient VL-fuel conversion. This methodology affords us to successful access to the novel plasmonic Pt/TiO2-HA (large Pt nanoparticles (NPs) supported on TiO2 hierarchical nano-architecture (TiO2-HA)) photocatalysts that exhibit plasmon absorption in the visible range and consequent outstanding activity and durability for VLWS. Particularly, the Pt/TiO2-HA shows an excellent photocatalytic activity for overall water splitting rather than only for hydrogen evolution (HE), which is superior to those of the conventional plasmonic Au/TiO2 photocatalysts. The synergistic effects of the high Schottky barrier at the Pt–TiO2-HA interface, which induces the stronger reduction ability of hot electrons, and intrinsic Pt catalytic activity are responsible for the exceptional photocatalytic performance of Pt/TiO2-HA and simplify the composition of plasmonic photocatalysts.
Copper Redox Cycling Inhibits Aβ Fibre Formation and Promotes Fibre Fragmentation, while Generating a Dityrosine Aβ Dimer
Authors: Gu Miao , Bode David C. , Viles John H. 
Published: October 2018

AbstractOxidative stress and the formation of plaques which contain amyloid-β (Aβ) peptides are two key hallmarks of Alzheimer’s disease (AD). Dityrosine is found in the plaques of AD patients and Aβ dimers have been linked to neurotoxicity. Here we investigate the formation of Aβ dityrosine dimers promoted by Cu2+/+ Fenton reactions. Using fluorescence measurements and UV absorbance, we show that dityrosine can be formed aerobically when Aβ is incubated with Cu2+ and hydrogen-peroxide, or in a Cu2+ and ascorbate redox mixture. The dityrosine cross-linking can occur for both monomeric and fibrillar forms of Aβ. We show that oxidative modification of Aβ impedes the ability for Aβ monomer to form fibres, as indicated by the amyloid specific dye Thioflavin T (ThT). Transmission electron microscopy (TEM) indicates the limited amyloid assemblies that form have a marked reduction in fibre length for Aβ(1–40). Importantly, the addition of Cu2+ and a reductant to preformed Aβ(1–40) fibers causes their widespread fragmentation, reducing median fibre lengths from 800 nm to 150 nm upon oxidation. The processes of covalent cross-linking of Aβ fibres, dimer formation, and fibre fragmentation within plaques are likely to have a significant impact on Aβ clearance and neurotoxicity.
Modelling of Cellular Survival Following Radiation-Induced DNA Double-Strand Breaks
Authors: Wang Wenjing , Li Chunyan , Qiu Rui , Chen Yizheng , Wu Zhen , Zhang Hui , Li Junli 
Published: October 2018

AbstractA mechanistic model of cellular survival following radiation-induced DNA double-strand breaks (DSBs) was proposed in this study. DSBs were assumed as the initial lesions in the DNA of the cell nucleus induced by ionizing radiation. The non-homologous end-joining (NHEJ) pathway was considered as the domain pathway of DSB repair in mammalian cells. The model was proposed to predict the relationship between radiation-induced DSBs in nucleus and probability of cell survival, which was quantitatively described by two input parameters and six fitting parameters. One input parameter was the average number of primary particles which caused DSB, the other input parameter was the average number of DSBs yielded by each primary particle that caused DSB. The fitting parameters were used to describe the biological characteristics of the irradiated cells. By determining the fitting parameters of the model with experimental data, the model is able to estimate surviving fractions for the same type of cells exposed to particles with different physical parameters. The model further revealed the mechanism of cell death induced by the DSB effect. Relative biological effectiveness (RBE) of charged particles at different survival could be calculated with the model, which would provide reference for clinical treatment.
Direct visualization of DNA baton pass between replication factors bound to PCNA
Authors: Mayanagi Kouta , Ishino Sonoko , Shirai Tsuyoshi , Oyama Takuji , Kiyonari Shinichi , Kohda Daisuke , Morikawa Kosuke , Ishino Yoshizumi 
Published: October 2018

AbstractIn Eukarya and Archaea, the lagging strand synthesis is accomplished mainly by three key factors, DNA polymerase (Pol), flap endonuclease (FEN), and DNA ligase (Lig), in the DNA replication process. These three factors form important complexes with proliferating cell nuclear antigen (PCNA), thereby constructing a platform that enable each protein factor to act successively and smoothly on DNA. The structures of the Pol-PCNA-DNA and Lig-PCNA-DNA complexes alone have been visualized by single particle analysis. However, the FEN-PCNA-DNA complex structure remains unknown. In this report, we for the first time present this tertiary structure determined by single particle analysis. We also successfully visualized the structure of the FEN-Lig-PCNA-DNA complex, corresponding to a putative intermediate state between the removal of the DNA flap by FEN and the sealing of the nicked DNA by Lig. This structural study presents the direct visualization of the handing-over action, which proceeds between different replication factors on a single PCNA clamp bound to DNA. We detected a drastic conversion of the DNA from a bent form to a straight form, in addition to the dynamic motions of replication factors in the switching process.
Pannexin 1 regulates adipose stromal cell differentiation and fat accumulation
Authors: Lee Vanessa R. , Barr Kevin J. , Kelly John J. , Johnston Danielle , Brown Cody F. C. , Robb Kevin P. , Sayedyahossein Samar , Huang Kenneth , Gros Robert , Flynn Lauren E. , Penuela Silvia 
Published: October 2018

AbstractPannexin 1 (Panx1) is a channel-forming glycoprotein important in paracrine signaling and cellular development. In this study, we discovered that mice globally lacking Panx1 (KO) have significantly greater total fat mass and reduced lean mass compared to wild type (WT) mice under a normal diet. Despite having higher fat content, Panx1 KO mice on a high fat diet exhibited no differences in weight gain and blood markers of obesity as compared to WT controls, except for an increase in glucose and insulin levels. However, metabolic cage data revealed that these Panx1 KO mice display significantly increased activity levels, higher ambulatory activity, and reduced sleep duration relative to their WT littermates on a high-fat diet. To uncover the cellular mechanism responsible for the increased fat content in the KO, we isolated primary cultures of adipose-derived stromal cells (ASCs) from WT and KO fat pads. In WT ASCs we observed that Panx1 protein levels increase upon induction into an adipogenic lineage. ASCs isolated from Panx1 KO mice proliferate less but demonstrate enhanced adipogenic differentiation with increased intracellular lipid accumulation, glycerol-3-phosphate dehydrogenase (GPDH) enzyme activity, and adipokine secretion, as compared to WT ASCs. This was consistent with the increased adipocyte size and decreased adipocyte numbers observed in subcutaneous fat of the Panx1 KO mice compared to WT. We concluded that Panx1 plays a key role in adipose stromal cells during the early stages of adipogenic proliferation and differentiation, regulating fat accumulation in vivo.
The effect of anxiety on emotional recognition: evidence from an ERP study
Authors: Yu Qianqian , Zhuang Qian , Wang Bo , Liu Xingze , Zhao Guang , Zhang Meng 
Published: October 2018

AbstractAnxiety-related bias in the recognition memory based on trait anxiety has induced some studies. Their results, however, were conflicting. In fact, anxious differences not only differed from personality traits but also from different anxiety mood levels. We explored the emotional memory bias in both trait and state anxiety individuals, the high trait and high state anxiety group, the high trait and low state anxiety group, the low trait and high state anxiety group, and the low trait and low state anxiety group, on classic recognition paradigm using event-related potentials (ERPs). The behavioral results showed high state anxiety levels increased the d’ of negative words, regardless of the trait anxiety of participant is high or low, and a lower d’ of recognition memory for negative words than for neutral and positive words in all participants. Moreover, Electrophysiological results supported the findings of behavior, showing an earlier N400 (250–500 ms) latency elicited for new-negative words in high state level than in low state levels in right parietal region. These results suggested that the memory bias to negative events resides in state anxiety, but not in trait anxiety.
The Roles of Climate Change and Climate Variability in the 2017 Atlantic Hurricane Season
Authors: Lim Young-Kwon , Schubert Siegfried D. , Kovach Robin , Molod Andrea M. , Pawson Steven 
Published: October 2018

AbstractThe 2017 Atlantic hurricane season was extremely active with six major hurricanes, the third most on record. The sea-surface temperatures (SSTs) over the eastern Main Development Region (EMDR), where many tropical cyclones (TCs) developed during active months of August/September, were ~0.96 °C above the 1901–2017 average (warmest on record): about ~0.42 °C from a long-term upward trend and the rest (~80%) attributed to the Atlantic Meridional Mode (AMM). The contribution to the SST from the North Atlantic Oscillation (NAO) over the EMDR was a weak warming, while that from El Niño–Southern Oscillation (ENSO) was negligible. Nevertheless, ENSO, the NAO, and the AMM all contributed to favorable wind shear conditions, while the AMM also produced enhanced atmospheric instability. Compared with the strong hurricane years of 2005/2010, the ocean heat content (OHC) during 2017 was larger across the tropics, with higher SST anomalies over the EMDR and Caribbean Sea. On the other hand, the dynamical/thermodynamical atmospheric conditions, while favorable for enhanced TC activity, were less prominent than in 2005/2010 across the tropics. The results suggest that unusually warm SST in the EMDR together with the long fetch of the resulting storms in the presence of record-breaking OHC may be key factors in driving the strong TC activity in 2017.