bluuebunny/crossref_metadata_2025_split huggingface dataset:
Scratching the surface: Footprint of a late Carboniferous ice sheet
Authors: Le Heron D.P. , Dietrich P. , Busfield M.E. , Kettler C. , Bermanschläger S. , Grasemann B. 
Published: September 2019

AbstractField observations in conjunction with aerial images from an unmanned aerial vehicle were used to create the first map of a glacial unconformity underlying the late Carboniferous Dwyka Group of South Africa. Crosscutting relationships reveal that the glacial unconformity at Oorlogskloof, in which flutes, grooves, and striae were ploughed into unconsolidated sand, formed in a three-phased process charting a periodic shift in the locus of subglacial erosion. The unconformity formed by a periodically decoupled ice sheet in a probable tidewater setting. This model contrasts with earlier views that the structures simply record progressive ice-margin liftoff during transgression, and they provide unique insight into the complex temporal development of a 300 Ma subglacial environment.
Characteristics and changes in characteristics of women and babies admitted to residential parenting services in New South Wales, Australia in the first year following birth: a population-based data linkage study 2000–2012
Authors: Dahlen Hannah G , Thornton Charlene , Fowler Cathrine , Mills Robert , O'Loughlin Grainne , Smit Jenny , Schmied Virginia 
Published: September 2019

ObjectiveTo examine the characteristics of women and babies admitted to the residential parenting services (RPS) of Tresillian and Karitane in the first year following birth.DesignA linked population data cohort study was undertaken for the years 2000–2012.SettingNew South Wales (NSW), Australia.ParticipantsAll women giving birth and babies born in NSW were compared with those admitted to RPS.ResultsDuring the time period there were a total of 1 097 762 births (2000–2012) in NSW and 32 991 admissions to RPS. Women in cohort 1: (those admitted to RPS) were older at the time of birth, more likely to be admitted as a private patient at the time of birth, be born in Australia and be having their first baby compared with women in cohort 2 (those not admitted to an RPS). Women admitted to RPS experienced more birth intervention (induction, instrumental birth, caesarean section), had more multiple births and were more likely to have a male infant. Their babies were also more likely to be resuscitated and have experienced birth trauma to the scalp. Between 2000 and 2012 the average age of women in the RPS increased by nearly 2 years; their infants were older on admission and women were less likely to smoke. Over the time period there was a drop in the numbers of women admitted to RPS having a normal vaginal birth and an increase in women having an instrumental birth.ConclusionWomen who access RPS in the first year after birth are more socially advantaged and have higher birth intervention than those who do not, due in part to higher numbers birthing in the private sector where intervention rates are high. The rise in women admitted to RPS (2000–2012) who have had instrumental births is intriguing as overall rates did not increase.
Use and reporting of experience-based codesign studies in the healthcare setting: a systematic review
Authors: Green Theresa , Bonner Ann , Teleni Laisa , Bradford Natalie , Purtell Louise , Douglas Clint , Yates Patsy , MacAndrew Margaret , Dao Hai Yen , Chan Raymond Javan 
Published: September 2019

BackgroundExperience-based codesign (EBCD) is an approach to health service design that engages patients and healthcare staff in partnership to develop and improve health services or pathways of care. The aim of this systematic review was to examine the use (structure, process and outcomes) and reporting of EBCD in health service improvement activities.MethodsElectronic databases (MEDLINE, CINAHL, PsycINFO and The Cochrane Library) were searched to identify peer-reviewed articles published from database inception to August 2018. Search terms identified peer-reviewed English language qualitative, quantitative and mixed methods studies that underwent independent screening by two authors. Full texts were independently reviewed by two reviewers and data were independently extracted by one reviewer before being checked by a second reviewer. Adherence to the 10 activities embedded within the eight-stage EBCD framework was calculated for each study.ResultsWe identified 20 studies predominantly from the UK and in acute mental health or cancer services. EBCD fidelity ranged from 40% to 100% with only three studies satisfying 100% fidelity.ConclusionEBCD is used predominantly for quality improvement, but has potential to be used for intervention design projects. There is variation in the use of EBCD, with many studies eliminating or modifying some EBCD stages. Moreover, there is no consistency in reporting. In order to evaluate the effect of modifying EBCD or levels of EBCD fidelity, the outcomes of each EBCD phase (ie, touchpoints and improvement activities) should be reported in a consistent manner.Trial registration numberCRD42018105879.
Stochastic resonance in asymmetric time-delayed bistable system under multiplicative and additive noise and its applications in bearing fault detection
Authors: He Lifang , Hu Dayun , Zhang Gang , Lu Siliang 
Published: September 2019

The asymmetric bistable system with time delays in the feedback force and random force under multiplicative and additive Gaussian noise is studied. Using the small time delay approximation approach and time-delayed Fokker–Planck equations (FPE), the signal-to-noise ratio (SNR) of the proposed stochastic system is obtained. The stochastic resonance (SR) phenomena influenced by parameters — including system parameters [Formula: see text], [Formula: see text], asymmetry parameter [Formula: see text], time delay [Formula: see text], strength [Formula: see text] of the time-delayed feedback, noise intensities [Formula: see text] and [Formula: see text] of multiplicative and additive noise, and correlation strength [Formula: see text] between two noises, are also analyzed by numerical simulations. Results demonstrate that the SR performance of the asymmetric bistable system is superior to one symmetric bistable system. Besides, both time delay and strength of time-delayed feedback could enhance the SR to some extent. Then, the asymmetric time-delayed bistable SR (ATDBSR) method is used to the bearing fault diagnosis. The engineering applications of the ATDBSR method are realized and the value of the method is verified by effective experimental results.
Deposition of molybdenum nitride thin layers on substrates of stainless steel AISI304 using a Mather-type of plasma focus device
Authors: Al-Hawat Sh. , Akel M. , Abdallah B. , Kharoub M. Abu 
Published: September 2019

This study focuses on effects of number of shots and the distance from the top of anode on Mo–N deposition process on the surfaces of AISI304 samples using a low energy (2.8 kJ) plasma focus device (AECS PF-1) at room temperature. The structural, morphological, elemental composition, surface roughness and micro-hardness properties of treated surfaces were investigated versus the number of shots and the axial distance from the anode. The obtained XRD spectra show that some of the treated surfaces were in crystalline phase with [Formula: see text]-Mo2N (FCC) structure (at 3 cm with 10–40 shots and at 5 cm with 30 and 40 shots) and some others had amorphous structure at 5 cm with 10 and 20 shots and at 7 cm with 10–40 shots. SEM images indicate that the thermal effect occurred at 3 cm and the deposition process of Mo–N at 5 cm and 7 cm from the anode with an increase in number of shots. The atomic ratio for nitrogen was 10.62%, 12.88%, and for molybdenum it was 0.23%, 3.36% at 3 cm, respectively. The atomic ratio for nitrogen has achieved 14.95% and 22.17%, however, the atomic ratio for molybdenum was 2.11% and 7.17 % at 5 cm, respectively. The surface roughness and size of grains on the surface of deposited layers were investigated by AFM analysis. Furthermore, the variation in the micro-hardness of the Mo–N thin layers deposited by different number of shots at different distances from the tip of anode was explained, qualitatively, on the basis of morphological characteristics of the thin layers. The decreasing rates of hardness in the case of 10 shots were 146%, 117% and 112%, and at 40 shots were 237%, 149% and 141% with the increasing of distances 3, 5 and 7 cm, respectively.
Structural, magnetic and dielectric studies of siderite nano-particles synthesized by hydrothermal method
Authors: Oza Mahatta , Jethva H. O. , Kanchan D. K. , Joshi H. H. , Joshi M. J. 
Published: September 2019

Siderite or ferrous carbonate [Formula: see text] is a well-known mineral and finds applications in various fields such as dietary supplement to treat anemia and in petroleum drilling fluids for [Formula: see text] removal. The FeCO3 nano-particles are synthesized by hydrothermal method using aqueous solutions of iron sulfate, ascorbic acid and ammonium carbonate with a molar ratio of 1:1:3, respectively, and heating at [Formula: see text]C for 1.5 h in Teflon-lined stainless steel autoclave. The recovered sample is characterized by several techniques. The powder XRD indicates the hexagonal crystal system and the average crystallite size of 17.32 nm are obtained from the Scherrer’s formula and 18.98 nm is obtained from the Williamson and Hall formula. The TEM images suggest the spherical nature of the nano-particles. The EDX confirms the elemental presence of iron, carbon and oxygen. The impedance and dielectric studies are carried out within 20 Hz–2 MHz range at room temperature. The complex impedance plot, i.e. the Nyquist plot, is composed of one semicircle indicating the contribution from the grain only. The Jonscher’s power-law is applied to AC conductivity data. The VSM data at room temperature and at low temperature, i.e. 20–300 K range, suggests a weak antiferromagnetic nature of the sample.
Proteomics analysis of the matrisome from MC38 experimental mouse liver metastases
Authors: Yuzhalin Arseniy E. , Lim Su Yin , Gordon-Weeks Alex N. , Fischer Roman , Kessler Benedikt M. , Yu Dihua , Muschel Ruth J. 
Published: September 2019

Dissemination of primary tumors to distant anatomical sites has a substantial negative impact on patient prognosis. The liver is a common site for metastases from colorectal cancer, and patients with hepatic metastases have generally much shorter survival, raising a need to develop and implement novel strategies for targeting metastatic disease. The extracellular matrix (ECM) is a meshwork of highly crosslinked, insoluble high-molecular-mass proteins maintaining tissue integrity and establishing cell–cell interactions. Emerging evidence identifies the importance of the ECM in cancer cell migration, invasion, intravasation, and metastasis. Here, we isolated the ECM from MC38 mouse liver metastases using our optimized method of mild detergent solubilization followed by biochemical enrichment. The matrices were subjected to label-free quantitative mass spectrometry analysis, revealing proteins highly abundant in the metastatic matrisome. The resulting list of proteins upregulated in the ECM significantly predicted survival in patients with colorectal cancer but not other cancers with strong involvement of the ECM component. One of the proteins upregulated in liver metastatic ECM, annexin A1, was not previously studied in the context of cancer-associated matrisome. Here, we show that annexin A1 was markedly upregulated in colon cancer cell lines compared with cancer cells of other origin and also over-represented in human primary colorectal lesions, as well as hepatic metastases, compared with their adjacent healthy tissue counterparts. In conclusion, our study provides a comprehensive ECM characterization of MC38 experimental liver metastases and proposes annexin A1 as a putative target for this disease. NEW & NOTEWORTHY Here, the authors provide an extensive proteomics characterization of murine colorectal cancer liver metastasis matrisome (the ensemble of all extracellular matrix molecules). The findings presented in this study may enable identification of therapeutic targets or biomarkers of hepatic metastases.
The IBD-associated long noncoding RNA IFNG-AS1 regulates the balance between inflammatory and anti-inflammatory cytokine production after T-cell stimulation
Authors: Rankin Carl Robert , Shao Ling , Elliott Julie , Rowe Lorraine , Patel Ami , Videlock Elizabeth , Benhammou Jihane N. , Sauk Jenny S. , Ather Nimah , Corson Melissa , Alipour Omeed , Gulati Alakh , Pothoulakis Charalabos , Padua David Miguel 
Published: September 2019

The inflammatory bowel diseases (IBD) are a complex set of chronic gastrointestinal inflammatory conditions arising from the interplay of genetic and environmental factors. This study focuses on noncoding RNA transcripts as potential mediators of IBD pathophysiology. One particular gene, interferon γ-antisense 1 ( IFNG-AS1), has been consistently observed to be elevated in the intestinal mucosa of patients with actively inflamed IBD versus healthy controls. This study builds on these observations, demonstrating that the second splice variant is specifically altered, and this alteration even stratifies within inflamed patients. With the use of a CRISPR-based overexpression system, IFNG-AS1 was selectively overexpressed directly from its genomic loci in T cells. An unbiased mRNA array on these cells identified a large increase in many inflammatory cytokines and a decrease in anti-inflammatory cytokines after IFNG-AS1 overexpression. Media from T cells overexpressing IFNG-AS1 elicited an inflammatory signaling cascade in primary human peripheral blood mononuclear cells, suggesting the potential functional importance of IFNG-AS1 in IBD pathophysiology. The significance of these results is amplified by studies suggesting that a single-nucleotide polymorphism in IFNG-AS1, rs7134599, was associated with both subtypes of patients with IBD independently of race. NEW & NOTEWORTHY Long noncoding RNAs are an emerging field of inflammatory bowel disease (IBD) research. This study mechanistically analyzes the role of a commonly upregulated gene in IBD and shows IFNG-AS1 as a mediator of an inflammatory signaling cascade.
Shortening of airway smooth muscle is modulated by prolonging the time without simulated deep inspirations in ovine tracheal strips
Authors: Gazzola Morgan , Khadangi Fatemeh , Clisson Marine , Beaudoin Jonathan , Clavel Marie-Annick , Bossé Ynuk 
Published: September 2019

The shortening of airway smooth muscle (ASM) is greatly affected by time. This is because stimuli affecting ASM shortening, such as bronchoactive molecules or the strain inflicted by breathing maneuvers, not only alter quick biochemical processes regulating contraction but also slower processes that allow ASM to adapt to an ever-changing length. Little attention has been given to the effect of time on ASM shortening. The present study investigates the effect of changing the time interval between simulated deep inspirations (DIs) on ASM shortening and its responsiveness to simulated DIs. Excised tracheal strips from sheep were mounted in organ baths and either activated with methacholine or relaxed with isoproterenol. They were then subjected to simulated DIs by imposing swings in distending stress, emulating a transmural pressure from 5 to 30 cmH2O. The simulated DIs were intercalated by 2, 5, 10, or 30 min. In between simulated DIs, the distending stress was either fixed or oscillating to simulate tidal breathing. The results show that although shortening was increased by prolonging the interval between simulated DIs, the bronchodilator effect of simulated DIs (i.e., the elongation of the strip post- vs. pre-DI) was not affected, and the rate of re-shortening post-simulated DIs was decreased. As the frequency with which DIs are taken increases upon bronchoconstriction, our results may be relevant to typical alterations observed in asthma, such as an increased rate of re-narrowing post-DI. NEW & NOTEWORTHY The frequency with which patients with asthma take deep inspirations (DIs) increases during bronchoconstriction. This in vitro study investigated the effect of changing the time interval between simulated DIs on airway smooth muscle shortening. The results demonstrated that decreasing the interval between simulated DIs not only decreases shortening, which may be protective against excessive airway narrowing, but also increases the rate of re-shortening post-simulated DIs, which may contribute to the increased rate of re-narrowing post-DI observed in asthma.
ImmunoPET, [64Cu]Cu-DOTA-Anti-CD33 PET-CT, Imaging of an AML Xenograft Model
Authors: Srideshikan Sargur Madabushi , Brooks Jamison , Zuro Darren , Kumar Bijender , Sanchez James , Echavarria Parra Liliana , Orellana Marvin , Vishwasrao Paresh , Nair Indu , Chea Junie , Poku Kofi , Bowles Nicole , Miller Aaron , Ebner Todd , Molnar Justin , Rosenthal Joseph , Vallera Daniel A. , Wong Jeffrey Y.C. , Stein Anthony S. , Colcher David , Shively John E. , Yazaki Paul J. , Hui Susanta K. 
Published: September 2019

AbstractPurpose:Acute myeloid leukemia (AML) is a highly aggressive form of leukemia, which results in poor survival outcomes. Currently, diagnosis and prognosis are based on invasive single-point bone marrow biopsies (iliac crest). There is currently no AML-specific noninvasive imaging method to detect disease, including in extramedullary organs, representing an unmet clinical need. About 85% to 90% of human myeloid leukemia cells express CD33 cell surface receptors, highlighting CD33 as an ideal candidate for AML immunoPET.Experimental Design:We evaluated whether [64Cu]Cu-DOTA-anti-CD33 murine mAb can be used for immunoPET imaging of AML in a preclinical model. MicroCT was adjusted to detect spatial/anatomical details of PET activity. For translational purposes, a humanized anti-CD33 antibody was produced; we confirmed its ability to detect disease and its distribution. We reconfirmed/validated CD33 antibody-specific targeting with an antibody–drug conjugate (ADC) and radioimmunotherapy (RIT).Results:[64Cu]Cu-DOTA-anti-CD33–based PET-CT imaging detected CD33+ AML in mice with high sensitivity (95.65%) and specificity (100%). The CD33+ PET activity was significantly higher in specific skeletal niches [femur (P &lt; 0.00001), tibia (P = 0.0001), humerus (P = 0.0014), and lumber spine (P &lt; 0.00001)] in AML-bearing mice (over nonleukemic control mice). Interestingly, the hybrid PET-CT imaging showed high disease activity in the epiphysis/metaphysis of the femur, indicating regional spatial heterogeneity. Anti-CD33 therapy using newly developed humanized anti-CD33 mAb as an ADC (P = 0.02) and [225Ac]Ac-anti-CD33-RIT (P &lt; 0.00001) significantly reduced disease burden over that of respective controls.Conclusions:We have successfully developed a novel anti-CD33 immunoPET-CT–based noninvasive modality for AML and its spatial distribution, indicating a preferential skeletal niche.
T-cell Receptors Engineered De Novo for Peptide Specificity Can Mediate Optimal T-cell Activity without Self Cross-Reactivity
Authors: Sharma Preeti , Harris Daniel T. , Stone Jennifer D. , Kranz David M. 
Published: September 2019

Abstract
Despite progress in adoptive T-cell therapies, the identification of targets remains a challenge. Although chimeric antigen receptors recognize cell-surface antigens, T-cell receptors (TCR) have the advantage that they can target the array of intracellular proteins by binding to peptides associated with major histocompatibility complex (MHC) products (pepMHC). Although hundreds of cancer-associated peptides have been reported, it remains difficult to identify effective TCRs against each pepMHC complex. Conventional approaches require isolation of antigen-specific CD8+ T cells, followed by TCRαβ gene isolation and validation. To bypass this process, we used directed evolution to engineer TCRs with desired peptide specificity. Here, we compared the activity and cross-reactivity of two affinity-matured TCRs (T1 and RD1) with distinct origins. T1-TCR was isolated from a melanoma-reactive T-cell line specific for MART-1/HLA-A2, whereas RD1-TCR was derived de novo against MART-1/HLA-A2 by in vitro engineering. Despite their distinct origins, both TCRs exhibited similar peptide fine specificities, focused on the center of the MART-1 peptide. In CD4+ T cells, both TCRs mediated activity against MART-1 presented by HLA-A2. However, in CD8+ T cells, T1, but not RD1, demonstrated cross-reactivity with endogenous peptide/HLA-A2 complexes. Based on the fine specificity of these and other MART-1 binding TCRs, we conducted bioinformatics scans to identify structurally similar self-peptides in the human proteome. We showed that the T1-TCR cross-reacted with many of these self-peptides, whereas the RD1-TCR was rarely cross-reactive. Thus, TCRs such as RD1, generated de novo against cancer antigens, can serve as an alternative to TCRs generated from T-cell clones.
Stone-Free Rate after Treating Kidney Stones Exceeding 10 mm via Flexible Ureteroscopy: Can Endoscopic Assessment Replace Low-Dose Computed Tomography Control?
Authors: Wilhelm Konrad , Hahn Oliver , Schoenthaler Martin , Hein Simon , Neubauer Jakob , Schnabel Marco , Neisius Andreas 
Published: September 2019

<b><i>Introduction:</i></b> It is unclear whether endoscopic assessment of the stone-free rate after flexible ureteroscopy (fURS) is as effective as assessment with low-dose computed tomography (CT) scan. <b><i>Methods:</i></b> Prospective documentation of patients with kidney stones &#x3e; 10 mm diameter from 2 different centers (Freiburg, Regensburg), who underwent fURS and were declared to be endoscopically completely stone-free. Low-dose CT control performed 4–8 weeks postoperatively. <b><i>Results/Conclusion:</i></b> Thirty-eight patients were treated between October 2015 and August 2016 (12 F, 26 M). Average age was 55.9 years (range 19–82, SD 17.24), and body mass index was 29.7 kg/m<sup>2</sup> (range 23.5–42.5, SD 4.37). There were 2.0 (range 1–7, SD 1.55) stones with a mean diameter of 15 mm (range 10–40, SD 6.78) per kidney. Mean surgery time was 74 min (range 38–124, SD 24.28), and lithotripsy was necessary in 33 cases. CT was performed 5.4 weeks afterwards (range 4–8, SD 1.43). One patient had a 2 mm residual which was extracted by URS. Strictly speaking, endoluminal stone removal control failed in only that patient, yielding a negative predictive value of 97%. A routine postoperative CT scan would thus appear unnecessary in the case of negative endoscopic control for residual fragments and should be avoided to reduce radiation exposure. Further investigations with larger patient populations are necessary.