bluuebunny/crossref_metadata_2025_split huggingface dataset:
Energetic Particle Radiation Environment Observed by RAD on the Surface of Mars During the September 2017 Event
Authors: Ehresmann B. , Hassler D. M. , Zeitlin C. , Guo J. , Wimmer‐Schweingruber R. F. , Matthiä D. , Lohf H. , Burmeister S. , Rafkin S. C. R. , Berger T. , Reitz G. 
Published: May 2018

AbstractThe 10–12 September Solar Energetic Particle event produced the strongest increase of the radiation environment measured by the Radiation Assessment Detector on the surface of Mars since landing in August 2012. We report the details of the measurements of the energetic particle environment from Radiation Assessment Detector in Gale crater during this event. The Solar Energetic Particle event increased the low‐energy proton flux (below 100 MeV) by a factor of 30, and the higher‐energy proton flux by a factor of 4, above preevent levels. The 4He flux (below 100 MeV/nuc) rose by factors up to 10, and neutral particles by a factor of 2 above background. The increase started on 10 September around 19:50 UTC, peak‐level fluxes were reached on the morning of 11 September and prevailed for about 10 hr before decreasing toward background levels. The onset of a Forbush decrease on 13 September decreased the proton flux below preevent intensities.
Accuracy Required in Measurements of Refractive Index and Hygroscopic Response to Reduce Uncertainties in Estimates of Aerosol Radiative Forcing Efficiency
Authors: Valenzuela Antonio , Reid Jonathan P. , Bzdek Bryan R. , Orr‐Ewing Andrew J. 
Published: May 2018

AbstractThe magnitude of aerosol radiative forcing resulting from the scattering and absorption of radiation is still uncertain. Sources of uncertainty include the physical and optical properties of aerosol, reflected in uncertainties in real and imaginary refractive indices (n and k) and relative humidity (RH). The effect of RH on the geometrical size of aerosol particles is often reported as a hygroscopic kappa parameter (κ). The objective of this study is to explore the sensitivity of radiative forcing efficiency (RFE) to changes in particle properties in order to better define the accuracy with which optical and hygroscopic measurements must be made to reduce uncertainties in RFE. Parameterizations of precise values of n and k are considered as functions of RH for ammonium sulfate (AS) and brown carbon (BrC). The range of the RFE estimated for typical uncertainties of n and κ for AS of 0.1 μm dry radius is less than ±7% and is not affected by an increase of RH. For typical sizes of AS in the atmosphere (0.35 μm dry radius), the range of the RFE increases to ±20% at 90% RH and ±15% at 99% RH. Absorbing small BrC particles (0.1 μm dry radius) cause cooling at the top of the atmosphere, and as RH and κ increase, the RFE is more negative compared to the usual assumptions of dry unhygroscopic BrC. For larger BrC particles (0.35 μm dry radius), the change in RFE for RHs ~100% compared to dry conditions can take values around −100%.
Reward probability and timing uncertainty alter the effect of dorsal raphe serotonin neurons on patience
Authors: Miyazaki Katsuhiko , Miyazaki Kayoko W. , Yamanaka Akihiro , Tokuda Tomoki , Tanaka Kenji F. , Doya Kenji 
Published: May 2018

AbstractRecent experiments have shown that optogenetic activation of serotonin neurons in the dorsal raphe nucleus (DRN) in mice enhances patience in waiting for future rewards. Here, we show that serotonin effect in promoting waiting is maximized by both high probability and high timing uncertainty of reward. Optogenetic activation of serotonergic neurons prolongs waiting time in no-reward trials in a task with 75% food reward probability, but not with 50 or 25% reward probabilities. Serotonin effect in promoting waiting increases when the timing of reward presentation becomes unpredictable. To coherently explain the experimental data, we propose a Bayesian decision model of waiting that assumes that serotonin neuron activation increases the prior probability or subjective confidence of reward delivery. The present data and modeling point to the possibility of a generalized role of serotonin in resolving trade-offs, not only between immediate and delayed rewards, but also between sensory evidence and subjective confidence.
Comparison of glycopyrronium versus tiotropium on the time to clinically important deteriorations in patients with COPD: a post-hoc analysis of randomized trials
Authors: D’Urzo Anthony , Bader Giovanni , Shen Steven , Goyal Pankaj , Altman Pablo 
Published: May 2018

AbstractGlycopyrronium is a once-daily, inhaled long-acting muscarinic antagonist (LAMA) demonstrating similar efficacy to inhaled tiotropium in patients with moderate-to-severe COPD; however, the benefit of LAMAs on COPD symptoms has been variable. COPD is a progressive disease in which many patients develop an acute or sustained deterioration. Data on the prevention of clinically important deteriorations (CID) using LAMAs are limited. A pooled analysis was performed on four Phase III trials (n = 2936) that compared the efficacy of glycopyrronium (n = 1859) with tiotropium (n = 1077). The primary endpoint was significant delay and/or reduction in the occurrence of CID. CID was defined as any of the following: ≥100 mL decrease from baseline in pre-dose forced expiratory volume in 1 second (FEV1), ≥4 point increase in St George’s Respiratory Questionnaire score or a moderate-to-severe COPD exacerbation occurring after the first dose of study medication. A sustained CID was a CID occurring on ≥2 consecutive visits 4 weeks apart or for ≥50% of all available subsequent visits. Baseline characteristics for the overall population were similar. Patients had moderate (62%) or severe (38%) COPD. Mean post-bronchodilator FEV1 was approximately 55% predicted, and mean FEV1 reversibility was 16.7 and 18.6% in the glycopyrronium and tiotropium groups, respectively. Both glycopyrronium and tiotropium significantly reduced time to CID and sustained CID versus placebo (p < 0.001). No statistically significant differences were found between the glycopyrronium and tiotropium treatment groups in time to CID or sustained CID. Glycopyrronium is effective in delaying time to clinically important deteriorations, with similar efficacy to tiotropium.
Vocal specialization through tracheal elongation in an extinct Miocene pheasant from China
Authors: Li Zhiheng , Clarke Julia A. , Eliason Chad M. , Stidham Thomas A. , Deng Tao , Zhou Zhonghe 
Published: May 2018

AbstractModifications to the upper vocal tract involving hyper-elongated tracheae have evolved many times within crown birds, and their evolution has been linked to a ‘size exaggeration’ hypothesis in acoustic signaling and communication, whereby smaller-sized birds can produce louder sounds. A fossil skeleton of a new extinct species of wildfowl (Galliformes: Phasianidae) from the late Miocene of China, preserves an elongated, coiled trachea that represents the oldest fossil record of this vocal modification in birds and the first documentation of its evolution within pheasants. The phylogenetic position of this species within Phasianidae has not been fully resolved, but appears to document a separate independent origination of this vocal modification within Galliformes. The fossil preserves a coiled section of the trachea and other remains supporting a tracheal length longer than the bird’s body. This extinct species likely produced vocalizations with a lower fundamental frequency and reduced harmonics compared to similarly-sized pheasants. The independent evolution of this vocal feature in galliforms living in both open and closed habitats does not appear to be correlated with other factors of biology or its open savanna-like habitat. Features present in the fossil that are typically associated with sexual dimorphism suggest that sexual selection may have resulted in the evolution of both the morphology and vocalization mechanism in this extinct species.
Effects of single amino acid deficiency on mRNA translation are markedly different for methionine versus leucine
Authors: Mazor Kevin M. , Dong Leiming , Mao Yuanhui , Swanda Robert V. , Qian Shu-Bing , Stipanuk Martha H. 
Published: May 2018

AbstractAlthough amino acids are known regulators of translation, the unique contributions of specific amino acids are not well understood. We compared effects of culturing HEK293T cells in medium lacking either leucine, methionine, histidine, or arginine on eIF2 and 4EBP1 phosphorylation and measures of mRNA translation. Methionine starvation caused the most drastic decrease in translation as assessed by polysome formation, ribosome profiling, and a measure of protein synthesis (puromycin-labeled polypeptides) but had no significant effect on eIF2 phosphorylation, 4EBP1 hyperphosphorylation or 4EBP1 binding to eIF4E. Leucine starvation suppressed polysome formation and was the only tested condition that caused a significant decrease in 4EBP1 phosphorylation or increase in 4EBP1 binding to eIF4E, but effects of leucine starvation were not replicated by overexpressing nonphosphorylatable 4EBP1. This suggests the binding of 4EBP1 to eIF4E may not by itself explain the suppression of mRNA translation under conditions of leucine starvation. Ribosome profiling suggested that leucine deprivation may primarily inhibit ribosome loading, whereas methionine deprivation may primarily impair start site recognition. These data underscore our lack of a full understanding of how mRNA translation is regulated and point to a unique regulatory role of methionine status on translation initiation that is not dependent upon eIF2 phosphorylation.
Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority
Authors: Pearman J. K. , Leray M. , Villalobos R. , Machida R. J. , Berumen M. L. , Knowlton N. , Carvalho S. 
Published: May 2018

AbstractCoral reefs harbor diverse assemblages of organisms yet the majority of this diversity is hidden within the three dimensional structure of the reef and neglected using standard visual surveys. This study uses Autonomous Reef Monitoring Structures (ARMS) and amplicon sequencing methodologies, targeting mitochondrial cytochrome oxidase I and 18S rRNA genes, to investigate changes in the cryptic reef biodiversity. ARMS, deployed at 11 sites across a near- to off-shore gradient in the Red Sea were dominated by Porifera (sessile fraction), Arthropoda and Annelida (mobile fractions). The two primer sets detected different taxa lists, but patterns in community composition and structure were similar. While the microhabitat of the ARMS deployment affected the community structure, a clear cross-shelf gradient was observed for all fractions investigated. The partitioning of beta-diversity revealed that replacement (i.e. the substitution of species) made the highest contribution with richness playing a smaller role. Hence, different reef habitats across the shelf are relevant to regional diversity, as they harbor different communities, a result with clear implications for the design of Marine Protected Areas. ARMS can be vital tools to assess biodiversity patterns in the generally neglected but species-rich cryptic benthos, providing invaluable information for the management and conservation of hard-bottomed habitats over local and global scales.
TDP-43 induces p53-mediated cell death of cortical progenitors and immature neurons
Authors: Vogt Miriam A. , Ehsaei Zahra , Knuckles Philip , Higginbottom Adrian , Helmbrecht Michaela S. , Kunath Tilo , Eggan Kevin , Williams Luis A. , Shaw Pamela J. , Wurst Wolfgang , Floss Thomas , Huber Andrea B. , Taylor Verdon 
Published: May 2018

AbstractTAR DNA-binding protein 43 (TDP-43) is a key player in neurodegenerative diseases including frontotemporal lobar degeneration (FTLD) and amyotrophic lateral sclerosis (ALS). Accumulation of TDP-43 is associated with neuronal death in the brain. How increased and disease-causing mutant forms of TDP-43 induce cell death remains unclear. Here we addressed the role of TDP-43 during neural development and show that reduced TDP-43 causes defects in neural stem/progenitor cell proliferation but not cell death. However, overexpression of wild type and TDP-43A315Tproteins induce p53-dependent apoptosis of neural stem/progenitors and human induced pluripotent cell (iPS)-derived immature cortical neurons. We show that TDP-43 induces expression of the proapoptotic BH3-only genesBbc3andBax, and that p53 inhibition rescues TDP-43 induced cell death of embryonic mouse, and human cortical neurons, including those derived from TDP-43G298SALS patient iPS cells. Hence, an increase in wild type and mutant TDP-43 induces p53-dependent cell death in neural progenitors developing neurons and this can be rescued. These findings may have important implications for accumulated or mutant TDP-43 induced neurodegenerative diseases.
Validation of control genes and a standardised protocol for quantifying gene expression in the livers of C57BL/6 and ApoE−/− mice
Authors: Day Priscilla E. L. , Chambers Karen F. , Winterbone Mark S. , García-Blanco Tatiana , Vauzour David , Kroon Paul A. 
Published: May 2018

AbstractThe liver plays a critical role in food and drug metabolism and detoxification and accordingly influences systemic body homeostasis in health and disease. While the C57BL/6 and ApoE−/− mouse models are widely used to study gene expression changes in liver disease and metabolism, currently there are no validated stably expressed endogenous genes in these models, neither is it known how gene expression varies within and across liver lobes. Here we show regional variations in the expression of Ywhaz, Gak, Gapdh, Hmbs and Act-β endogenous genes across a liver lobe; Using homogeneous samples from the four liver lobes of 6 C57BL/6 mice we tested the stability of 12 endogenous genes and show that Act-β and Eif2-α are the most stably expressed endogenous genes in all four lobes and demonstrate lobular differences in the expression of Abca1 cholesterol efflux gene. These results suggest that sampling from a specified homogeneous powdered liver lobe is paramount in enhancing data reliability and reproducibility. The stability of the 12 endogenous genes was further tested using homogeneous samples of left liver lobes from 20 ApoE−/− mice on standard or high polyphenol diets. Act-β and Ywhaz are suitable endogenous genes for gene expression normalisation in this mouse model.
Vibrational and electrical properties of Cu2−xTe films: experimental data and first principle calculations
Authors: Salmón-Gamboa J. U. , Barajas-Aguilar A. H. , Ruiz-Ortega L. I. , Garay-Tapia A. M. , Jiménez-Sandoval S. J. 
Published: May 2018

AbstractVibrational and electrical properties of sputtered films of the copper telluride system are presented. Despite of its technological importance in photovoltaics, the fundamental properties of copper tellurides are poorly understood. Films were deposited at 200 °C by rf sputtering from targets containing mixtures of copper and tellurium powders at nominal concentrations of Cu1.25Te, Cu1.5Te, Cu1.75Te and Cu2Te. Remarkably for the copper telluride system, it was possible to obtain single-phase vulcanite (CuTe) from the Cu1.25Te target. Two-phase mixtures of rickardite (Cu7Te5) and weissite (Cu2−xTe) were achieved for other cases. Raman spectra were obtained using two laser lines: 633 and 488 nm. Density functional theory was employed to calculate the phonon dispersion curves and density of states for vulcanite. The Raman bands were in good correspondence with the calculated frequencies. In general, the Raman spectra consisted of high-intensity totally symmetric modes superimposed on monotonically decaying signals. These were explained in terms of three contributing phenomena: convolution of vibrational normal modes, phonon-coupled charge density fluctuations and time-varying local-field contributions to the electric susceptibility. Studies on the conductivity, mobility and carrier concentration were carried out by the Van der Pauw method. Micro/nano scale surface potential studies were performed through Kelvin probe force microscopy mapping.
Inflexible daily behaviour is associated with the ability to control an automatic reaction in autism spectrum disorder
Authors: Tei Shisei , Fujino Junya , Hashimoto Ryu-ichiro , Itahashi Takashi , Ohta Haruhisa , Kanai Chieko , Kubota Manabu , Nakamura Motoaki , Kato Nobumasa , Takahashi Hidehiko 
Published: May 2018

AbstractInflexible behaviours in people with autism spectrum disorder (ASD) broadly obstruct social communication. Meanwhile, flexibility implicates cognitive control to resolve socially conflicting situations; however, it remains unclear how people with ASD behave in the face of these conflicts in this respect. We used the ultimatum game (UG) and the implicit-association test (IAT) to examine goal-directed/economic flexibility, both of which involve conflict and cognitive control. In addition, we used the Detail and Flexibility Questionnaire (DFlex) to measure inflexible everyday behaviour with diminished cognitive control and attention shifting. We observed the decreased flexibility in participants with ASD (DFlex and IAT); further, their IAT scores positively correlated with DFlex. However, in the UG, contrary to our prediction, participants with ASD accepted unfair offers more frequently than TD. These results suggest that assessing the automatic/attention processing level with the IAT could be a useful approach to study behavioural flexibility among ASD compared with the UG, which might comprise multiple response strategies besides economic rationality. Overall, the severity of inflexible daily behaviours in people with ASD may be associated with a reduced flexible attitude at an automatic level, altered attention processing and decreased cognitive control.
Toxicity and Transcriptome Sequencing (RNA-seq) Analyses of Adult Zebrafish in Response to Exposure Carboxymethyl Cellulose Stabilized Iron Sulfide Nanoparticles
Authors: Zheng Min , Lu Jianguo , Zhao Dongye 
Published: May 2018

AbstractIncreasing utilization of stabilized iron sulfides (FeS) nanoparticles implies an elevated release of the materials into the environment. To understand potential impacts and underlying mechanisms of nanoparticle-induced stress, we used the transcriptome sequencing (RNA-seq) technique to characterize the transcriptomes from adult zebrafish exposed to 10 mg/L carboxymethyl cellulose (CMC) stabilized FeS nanoparticles for 96 h, demonstrating striking differences in the gene expression profiles in liver. The exposure caused significant expression alterations in genes related to immune and inflammatory responses, detoxification, oxidative stress and DNA damage/repair. The complement and coagulation cascades Kyoto encyclopedia of genes and genomes (KEGG) pathway was found significantly up-regulated under nanoparticle exposure. The quantitative real-time polymerase chain reaction using twelve genes confirmed the RNA-seq results. We identified several candidate genes commonly regulated in liver, which may serve as gene indicators when exposed to the nanoparticles. Hepatic inflammation was further confirmed by histological observation of pyknotic nuclei, and vacuole formation upon exposure. Tissue accumulation tests showed a 2.2 times higher iron concentration in the fish tissue upon exposure. This study provides preliminary mechanistic insights into potential toxic effects of organic matter stabilized FeS nanoparticles, which will improve our understanding of the genotoxicity caused by stabilized nanoparticles.
The antiviral protein Viperin suppresses T7 promoter dependent RNA synthesis–possible implications for its antiviral activity
Authors: Dukhovny Anna , Shlomai Amir , Sklan Ella H. 
Published: May 2018

AbstractViperin is a multifunctional interferon-inducible broad-spectrum antiviral protein. Viperin belongs to the S-Adenosylmethionine (SAM) superfamily of enzymes known to catalyze a wide variety of radical-mediated reactions. However, the exact mechanism by which viperin exerts its functions is still unclear. Interestingly, for many RNA viruses viperin was shown to inhibit viral RNA accumulation by interacting with different viral non-structural proteins. Here, we show that viperin inhibits RNA synthesis by bacteriophage T7 polymerase in mammalian cells. This inhibition is specific and occurs at the RNA level. Viperin expression significantly reduced T7-mediated cytoplasmic RNA levels. The data showing that viperin inhibits the bacteriophage T7 polymerase supports the conservation of viperin’s antiviral activity between species. These results highlight the possibility that viperin might utilize a broader mechanism of inhibition. Accordingly, our results suggest a novel mechanism involving polymerase inhibition and provides a tractable system for future mechanistic studies of viperin.
Iridescence impairs object recognition in bumblebees
Authors: Kjernsmo Karin , Hall Joanna R. , Doyle Cara , Khuzayim Nadia , Cuthill Innes C. , Scott-Samuel Nicholas E. , Whitney Heather M. 
Published: May 2018

AbstractIridescence is a taxonomically widespread and striking form of animal coloration, yet despite advances in understanding its mechanism, its function and adaptive value are poorly understood. We test a counterintuitive hypothesis about the function of iridescence: that it can act as camouflage through interference with object recognition. Using an established insect visual model (Bombus terrestris), we demonstrate that both diffraction grating and multilayer iridescence impair shape recognition (although not the more subtle form of diffraction grating seen in some flowers), supporting the idea that both strategies can be effective means of camouflage. We conclude that iridescence produces visual signals that can confuse potential predators, and this might explain the high frequency of iridescence in many animal taxa.
Similar spatial patterns of global climate response to aerosols from different regions
Authors: Kasoar Matthew , Shawki Dilshad , Voulgarakis Apostolos 
Published: May 2018

AbstractAnthropogenic aerosol forcing is spatially heterogeneous, mostly localised around industrialised regions like North America, Europe, East and South Asia. Emission reductions in each of these regions will force the climate in different locations, which could have diverse impacts on regional and global climate. Here, we show that removing sulphur dioxide (SO2) emissions from any of these northern-hemisphere regions in a global composition-climate model results in significant warming across the hemisphere, regardless of the emission region. Although the temperature response to these regionally localised forcings varies considerably in magnitude depending on the emission region, it shows a preferred spatial pattern independent of the location of the forcing. Using empirical orthogonal function analysis, we show that the structure of the response is tied to existing modes of internal climate variability in the model. This has implications for assessing impacts of emission reduction policies, and our understanding of how climate responds to heterogeneous forcings.