bluuebunny/crossref_metadata_2025_split huggingface dataset:
Global 3‐D Simulations of the Triple Oxygen Isotope Signature Δ17O in Atmospheric CO2
Authors: Koren Gerbrand , Schneider Linda , van der Velde Ivar R. , van Schaik Erik , Gromov Sergey S. , Adnew Getachew A. , Mrozek Martino Dorota J. , Hofmann Magdalena E. G. , Liang Mao‐Chang , Mahata Sasadhar , Bergamaschi Peter , van der Laan‐Luijkx Ingrid T. , Krol Maarten C. , Röckmann Thomas , Peters Wouter 
Published: June 2019

AbstractThe triple oxygen isotope signature Δ17O in atmospheric CO2, also known as its “17O excess,” has been proposed as a tracer for gross primary production (the gross uptake of CO2 by vegetation through photosynthesis). We present the first global 3‐D model simulations for Δ17O in atmospheric CO2 together with a detailed model description and sensitivity analyses. In our 3‐D model framework we include the stratospheric source of Δ17O in CO2 and the surface sinks from vegetation, soils, ocean, biomass burning, and fossil fuel combustion. The effect of oxidation of atmospheric CO on Δ17O in CO2 is also included in our model. We estimate that the global mean Δ17O (defined as
with λRL = 0.5229) of CO2 in the lowest 500 m of the atmosphere is 39.6 per meg, which is ∼20 per meg lower than estimates from existing box models. We compare our model results with a measured stratospheric Δ17O in CO2 profile from Sodankylä (Finland), which shows good agreement. In addition, we compare our model results with tropospheric measurements of Δ17O in CO2 from Göttingen (Germany) and Taipei (Taiwan), which shows some agreement but we also find substantial discrepancies that are subsequently discussed. Finally, we show model results for Zotino (Russia), Mauna Loa (United States), Manaus (Brazil), and South Pole, which we propose as possible locations for future measurements of Δ17O in tropospheric CO2 that can help to further increase our understanding of the global budget of Δ17O in atmospheric CO2.
FBXO22 mediates polyubiquitination and inactivation of LKB1 to promote lung cancer cell growth
Authors: Zhu Xiao-Na , He Ping , Zhang Liang , Yang Shuo , Zhang Hui-Lin , Zhu Di , Liu Meng-Di , Yu Yun 
Published: June 2019

AbstractLiver kinase B1 (LKB1) regulates both cell growth and energy metabolism. Inactivated mutations of LKB1, observed in 20–30% of nonsmall cell lung cancers (NSCLC), contribute significantly to lung cancer malignancy progression. However, the upstream signalings regulating LKB1 activity remain incompletely understood. Here, we present evidence that FBXO22 interacts with and promotes polyubiquitination of LKB1. More intriguingly, FBXO22 mediates Lys-63-linked LKB1 polyubiquitination and inhibits kinase activity of LKB1. Furthermore, over-expression of FBXO22 promotes NSCLC cell growth through inhibiting LKB1-AMPK-mTOR signaling in vitro and in vivo. Clinically, FBXO22 is highly expressed in human lung adenocarcinoma and high FBXO22 expression predicts significant poor prognosis. Our study provides new insights into the upstream regulation of LKB1 activation and identifies FBXO22 as a potential therapeutic target for lung cancer treatment.
Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex
Authors: Gauto Diego F. , Estrozi Leandro F. , Schwieters Charles D. , Effantin Gregory , Macek Pavel , Sounier Remy , Sivertsen Astrid C. , Schmidt Elena , Kerfah Rime , Mas Guillaume , Colletier Jacques-Philippe , Güntert Peter , Favier Adrien , Schoehn Guy , Schanda Paul , Boisbouvier Jerome 
Published: June 2019

AbstractAtomic-resolution structure determination is crucial for understanding protein function. Cryo-EM and NMR spectroscopy both provide structural information, but currently cryo-EM does not routinely give access to atomic-level structural data, and, generally, NMR structure determination is restricted to small (<30 kDa) proteins. We introduce an integrated structure determination approach that simultaneously uses NMR and EM data to overcome the limits of each of these methods. The approach enables structure determination of the 468 kDa large dodecameric aminopeptidase TET2 to a precision and accuracy below 1 Å by combining secondary-structure information obtained from near-complete magic-angle-spinning NMR assignments of the 39 kDa-large subunits, distance restraints from backbone amides and ILV methyl groups, and a 4.1 Å resolution EM map. The resulting structure exceeds current standards of NMR and EM structure determination in terms of molecular weight and precision. Importantly, the approach is successful even in cases where only medium-resolution cryo-EM data are available.
SMPDL3b modulates insulin receptor signaling in diabetic kidney disease
Authors: Mitrofanova A. , Mallela S. K. , Ducasa G. M. , Yoo T. H. , Rosenfeld-Gur E. , Zelnik I. D. , Molina J. , Varona Santos J. , Ge M. , Sloan A. , Kim J. J. , Pedigo C. , Bryn J. , Volosenco I. , Faul C. , Zeidan Y. H. , Garcia Hernandez C. , Mendez A. J. , Leibiger I. , Burke G. W. , Futerman A. H. , Barisoni L. , Ishimoto Y. , Inagi R. , Merscher S. , Fornoni A. 
Published: June 2019

AbstractSphingomyelin phosphodiesterase acid-like 3b (SMPDL3b) is a lipid raft enzyme that regulates plasma membrane (PM) fluidity. Here we report that SMPDL3b excess, as observed in podocytes in diabetic kidney disease (DKD), impairs insulin receptor isoform B-dependent pro-survival insulin signaling by interfering with insulin receptor isoforms binding to caveolin-1 in the PM. SMPDL3b excess affects the production of active sphingolipids resulting in decreased ceramide-1-phosphate (C1P) content as observed in human podocytes in vitro and in kidney cortexes of diabetic db/db mice in vivo. Podocyte-specific Smpdl3b deficiency in db/db mice is sufficient to restore kidney cortex C1P content and to protect from DKD. Exogenous administration of C1P restores IR signaling in vitro and prevents established DKD progression in vivo. Taken together, we identify SMPDL3b as a modulator of insulin signaling and demonstrate that supplementation with exogenous C1P may represent a lipid therapeutic strategy to treat diabetic complications such as DKD.
Changes in Plant Rhizosphere Microbial Communities under Different Vegetation Restoration Patterns in Karst and Non-karst Ecosystems
Authors: Fan Zhouzhou , Lu Shuyu , Liu Shuang , Guo Hui , Wang Tao , Zhou Jinxing , Peng Xiawei 
Published: June 2019

AbstractUnderstanding how patterns of recovery and geological conditions affect microbial communities is important for determining the stability of karst ecosystems. Here, we investigated the diversity and composition of microorganisms in karst and non-karst environments under natural restoration and artificial rehabilitation conditions. The results showed no significant differences in soil microbial diversity, but the microbial communities associated with geological conditions and tree species differed significantly. Variation partitioning analysis (VPA) showed that a total of 77.3% of the variation in bacteria and a total of 69.3% of the variation in fungi could be explained by vegetation type and geological background. There were significant differences in six bacterial classes (Actinobacteria, Alphaproteobacteria, Ktedonobacteria, TK10, Gammaproteobacteria, and Anaerolineae) and nine fungal classes (Eurotiomycetes, Agaricomycetes, unclassified _p_Ascomycota, Sordariomycetes, Tremellomycetes, norank_k_Fungi, Pezizomycetes, Leotiomycetes and Archaeorhizomycetes) among the soils collected from six plots. A Spearman correlation heatmap showed that the microbial community was affected by the major soil properties. Principal coordinates analysis indicated that the microbial community of Pinus yunnanensis in the artificial forest, which was established for the protection of the environment was most similar to that in the natural secondary forest in the karst ecosystem. These findings further our understanding of microbial responses to vegetation restoration and geological conditions.
A lattice model to manage the vector and the infection of the Xylella fastidiosa on olive trees
Authors: Fierro Annalisa , Liccardo Antonella , Porcelli Francesco 
Published: June 2019

AbstractSince October 2013 a new devastating plant disease, known as Olive Quick Decline Syndrome, has been killing most of the olive trees distributed in Apulia, South Italy. Xylella fastidiosa pauca ST53 is the plant pathogenic bacterium responsible for the disease, and the adult Meadow Spittlebug, Philaenus spumarius (L.) (Hemiptera Aphrophoridae), is its main vector. This study proposes a lattice model for the pathogen invasion of olive orchard aimed at identifying an appropriate strategy for arresting the infection, built on the management of the vector throughout its entire life cycle. In our model the olive orchard is depicted as a simple square lattice with olive trees and herbaceous vegetation distributed on the lattice sites in order to mimic the typical structure of an olive orchard; adult vectors are represented by particles moving on the lattice according to rules dictated by the interplay between vector and vegetation life cycles or phenology; the transmission process of the bacterium is regulated by a stochastic Susceptible, Infected and Removed model. On this baseline model, we build-up a proper Integrated Pest Management strategy based on tailoring, timing, and tuning of available control actions. We demonstrate that it is possible to reverse the hitherto unstoppable Xylella fastidiosa pauca ST53 invasion, by a rational vector and transmission control strategy.
First description of bacterial and fungal communities in Colombian coffee beans fermentation analysed using Illumina-based amplicon sequencing
Authors: de Oliveira Junqueira Ana C. , de Melo Pereira Gilberto V. , Coral Medina Jesus D. , Alvear María C. R. , Rosero Rubens , de Carvalho Neto Dão P. , Enríquez Hugo G. , Soccol Carlos R. 
Published: June 2019

AbstractIn Colombia, coffee growers use a traditional method of fermentation to remove the cherry pulp surrounding the beans. This process has a great influence on sensory quality and prestige of Colombian coffee in international markets, but has never been studied. Here we use an Illumina-based amplicon sequencing to investigate bacterial and fungal communities associated with spontaneous coffee-bean fermentation in Colombia. Microbial-derived metabolites were further analysed by high–performance liquid chromatography and gas chromatography–mass spectrometry. Highly diverse bacterial groups, comprising 160 genera belonging to 10 phyla, were found. Lactic acid bacteria (LAB), mainly represented by the genera Leuconostoc and Lactobacillus, showed relative prevalence over 60% at all sampling times. The structure of the fungal community was more homogeneous, with Pichia nakasei dominating throughout the fermentation process. Lactic acid and acetaldehyde were the major end-metabolites produced by LAB and Pichia, respectively. In addition, 20 volatile compounds were produced, comprising alcohols, organic acids, aldehydes, esters, terpenes, phenols, and hydrocarbons. Interestingly, 56 microbial genera, associated with native soil, seawater, plants, insects, and human contact, were detected for the first time in coffee fermentation. These microbial groups harbour a remarkable phenotypic diversity and may impart flavours that yield clues to the terroir of Colombian coffees.
Development of CS-TPP-dsRNA nanoparticles to enhance RNAi efficiency in the yellow fever mosquito, Aedes aegypti
Authors: Dhandapani Ramesh Kumar , Gurusamy Dhandapani , Howell Jeffrey L. , Palli Subba Reddy 
Published: June 2019

AbstractMosquito-borne diseases are a major threat to human health and are responsible for millions of deaths globally each year. Vector control is one of the most important approaches used in reducing the incidence of these diseases. However, increasing mosquito resistance to chemical insecticides presents challenges to this approach. Therefore, new strategies are necessary to develop the next generation vector control methods. Because of the target specificity of dsRNA, RNAi-based control measures are an attractive alternative to current insecticides used to control disease vectors. In this study, Chitosan (CS) was cross-linked to sodium tripolyphosphate (TPP) to produce nano-sized polyelectrolyte complexes with dsRNA. CS-TPP-dsRNA nanoparticles were prepared by ionic gelation method. The encapsulation efficiency, protection of dsRNA from nucleases, cellular uptake, in vivo biodistribution, larval mortality and gene knockdown efficiency of CS-TPP-dsRNA nanoparticles were determined. The results showed that at a 5:1 weight ratio of CS-TPP to dsRNA, nanoparticles of less than 200 nm mean diameter and a positive surface charge were formed. Confocal microscopy revealed the distribution of the fed CS-TPP-dsRNA nanoparticles in midgut, fat body and epidermis of yellow fever mosquito, Aedes aegypti larvae. Bioassays showed significant mortality of larvae fed on CS-TPP-dsRNA nanoparticles. These assays also showed knockdown of a target gene in CS-TPP-dsRNA nanoparticle fed larvae. These data suggest that CS-TPP nanoparticles may be used for delivery of dsRNA to mosquito larvae.
Heavy oxygen recycled into the lithospheric mantle
Authors: Dallai Luigi , Bianchini Gianluca , Avanzinelli Riccardo , Natali Claudio , Conticelli Sandro 
Published: June 2019

AbstractMagmas in volcanic arcs have geochemical and isotopic signatures that can be related to mantle metasomatism due to fluids and melts released by the down-going oceanic crust and overlying sediments, which modify the chemistry and mineralogy of the mantle wedge. However, the effectiveness of subduction-related metasomatic processes is difficult to evaluate because the composition of arc magmas is often overprinted by interactions with crustal lithologies occurring during magma ascent and emplacement. Here, we show unequivocal evidence for recycling of continental crust components into the mantle. Veined peridotite xenoliths sampled from Tallante monogenetic volcanoes in the Betic Cordillera (southern Spain) provide insights for mantle domains that reacted with Si-rich melts derived by partial melting of subducted crustal material. Felsic veins crosscutting peridotite and the surrounding orthopyroxene-rich metasomatic aureoles show the highest 18O/16O ratios measured to date in upper mantle assemblages worldwide. The anomalously high oxygen isotope compositions, coupled with very high 87Sr/86Sr values, imply the continental crust origin of the injected melts. Isotopic anomalies are progressively attenuated in peridotite away from the veins, showing 18O isotope variations well correlated with the amount of newly formed orthopyroxene. Diffusion may also affect the isotope ratios of mantle rocks undergoing crustal metasomatism due to the relaxation of 18O isotope anomalies to normal mantle values through time. Overall, the data define an O isotope “benchmark” allowing discrimination between mantle sources that attained re-equilibration after metasomatism (>5 Myr) and those affected by more recent subduction-derived enrichment processes.
Differential wing polyphenism adaptation across life stages under extreme high temperatures in corn leaf aphid
Authors: Chen Yu , Verheggen François J. , Sun Dandan , Wang Zhenying , Francis Frederic , He KangLai 
Published: June 2019

AbstractPolyphenism, a common phenomenon in nature, is an important form of adaptation in a diverse environment. Corn leaf aphid (CLA), Rhopalosiphum maidis, (Hemiptera: Aphididae), exhibit wing polyphenism in response to poor habitat quality. In this study, we focused on the effects of crowding and thermal cues on morph determination of CLA. Five developmental stages of aphids (1st to 4th nymphs and maternal adults) with increased population densities, were tested under two kinds of temperature patterns, i.e., A) a constant temperature of 22 °C with 2 h exposure to high temperature in the range of 35 to 39 °C during mid-photophase and B) different constant temperatures in the range of 22–30 °C with 2 h exposure to high temperature of 39 °C during mid-photophase. Crowding was found to directly impact winged induction. The 1st and 2nd nymphs were more sensitive for alate morphs induction under high density. In addition, temperature played a significant role in wing production, with the temperature setting of 26/39 °C in pattern B inducing higher alate morphs and survival than other temperature settings. Therefore, we hypothesize that warmer climate with brief high temperature is more favourable for survival and alate morphs production, but cool weather and transient extreme high temperature (>39 °C) is detrimental for CLA. Our results provide a new perspective on understanding the interactions between changes in extreme high temperatures and insect densities that differentially affect wing polymorphism for further demographic and distribution rates of species across temporal and spatial scales.
The spatial parameters of gait and their association with falls, functional decline and death in older adults: a prospective study
Authors: Rodríguez-Molinero Alejandro , Herrero-Larrea Alexandra , Miñarro Antonio , Narvaiza Leire , Gálvez-Barrón César , Gonzalo León Natalia , Valldosera Esther , de Mingo Eva , Macho Oscar , Aivar David , Pinzón Efren , Alba Adilis , Passarelli Jorge , Stasi Nadia , Valverde Rosa Ana , Kruse Liane , Felipe Elisabet , Collado Isabel , Sabater Joan Bosch 
Published: June 2019

AbstractAssociation between spatial gait parameters and adverse health outcomes in the elderly has not been sufficiently studied. The goal of this study is to evaluate whether the stride length or the step width predict falls, functional loss and mortality. We conducted a prospective cohort study on a probabilistic sample of 431 noninstitutionalized, older-than-64-years subjects living in Spain, who were followed-up for five years. In the baseline visit, spatial gait parameters were recorded along with several control variables, with special emphasis on known medical conditions, strength, balance and functional and cognitive capacities. In the follow-up calls, vital status, functional status and number of falls from last control were recorded. We found that a normalized-to-height stride length shorter than 0.52 predicted recurrent falls in the next 6 months with 93% sensitivity and 53% specificity (AUC: 0.72), and in the next 12 months with 81% sensitivity and 57% specificity (AUC: 0.67). A normalized stride length <0.5 predicted functional loss at 12 months with a sensitivity of 79.4% and specificity of 65.6% (AUC: 0.75). This predictive capacity remained independent after correcting for the rest of risk factors studied. Step-with was not clearly related to functional loss or falls. Both shorter normalized stride length (OR1.56; AUC: 0.62; p < 0.05) and larger step width (OR1.42; AUC: 0.62; p < 0.05) were associated with risk of death at 60 months; however, none of them remained as independent predictor of death, after correcting for other risk factors. In summary, spatial gait parameters may be risk markers for adverse outcomes in the elderly. Step length is independently associated with functional loss and falls at one year, after correction for numerous known risk factors.
Liver sinusoidal endothelial cells (LSECs) modifications in patients with chronic hepatitis C
Authors: Baiocchini Andrea , Del Nonno Franca , Taibi Chiara , Visco-Comandini Ubaldo , D’Offizi Gianpiero , Piacentini Mauro , Falasca Laura 
Published: June 2019

AbstractThe sinusoidal endothelial cells present in the liver (LSECs) are tipically characterized by the presence of pores (fenestrae). During some pathological conditions LSECs undergo “capillarization”, a process characterized by loss of fenestrations and acquisition of a vascular phenotype. In chronic liver disease capillarization has been reported to precede the development of fibrosis. LSECs modification in the setting of HCV infection is currently poorly investigated. Considering that HCV accounts for important changes in hepatocytes and in view of the intimate connection between hepatocytes and LSECs, here we set out to study in great detail the LSECs modifications in individuals with HCV-dependent chronic hepatitis. Electron microscopy analysis, and evaluation of CD32, CD31 and caveolin-1 expression showed that in HCV infection LSECs display major morphological changes but maintain their phenotypical identity. Capillarization was observed only in cases at initial stages of fibrosis. Our findings showed that the severity of LSECs modifications appears to be correlated with hepatocytes damage and fibrosis stage providing novel insight in the pathogenesis of HCV-chronic hepatitis.
Early corneal nerve fibre damage and increased Langerhans cell density in children with type 1 diabetes mellitus
Authors: Ferdousi Maryam , Romanchuk Kenneth , Mah Jean K. , Virtanen Heidi , Millar Christine , Malik Rayaz A. , Pacaud Danièle 
Published: June 2019

AbstractCorneal confocal microscopy (CCM) has been used to identify corneal nerve damage and increased Langerhans cell (LC) density in adults with Type 1 diabetes mellitus (T1DM). The purpose of this study was to evaluate whether corneal confocal microscopy can identify early corneal nerve damage and change in LC density in children and adolescents with T1DM. 64 participants with T1DM (age-14.6 ± 2.5 years, duration of diabetes-9.1 ± 2.7 years, HbA1c-75.66 ± 2.53 mmol/mol [9.1 ± 1.8%]) and 48 age-matched healthy control subjects underwent CCM. Sub-basal corneal nerve morphology and the density of mature and immature LCs was quantified. Corneal nerve fibre length and branch density were lower, whilst fibre density and tortuosity did not differ and both immature and mature LC density was significantly higher in T1DM compared to control subjects. There was no association between HbA1c and duration of diabetes with nerve fibre parameters or LC’s density. Children and adolescents with T1DM demonstrate early immune activation and nerve degeneration.
The ketogenic diet in children 3 years of age or younger: a 10-year single-center experience
Authors: Kim Se Hee , Shaw Alexandra , Blackford Robyn , Lowman Wesley , Laux Linda C. , Millichap John J. , Nordli Douglas R. 
Published: June 2019

AbstractThe ketogenic diet (KD) is an effective treatment option for intractable epilepsy. Here, we reviewed the last 10 years of our experience with the KD and characterized its use in patients under 3 years of age. Medical records of all patients under the age of 3 years who were treated with the ketogenic diet from April 2004 to June 2014 were retrospectively reviewed. One hundred and nine patients with drug-resistant epilepsy were included. The mean age at the initiation of the KD was 1.4 ± 0.8 years old. The youngest patient was 3 weeks old. After 3 months, 39% (42/109) of patients responded to the KD and experienced more than 50% seizure reduction. Of those 42 patients, 20 (18%) achieved complete seizure control. Patients with a genetic etiology showed a better response to the KD in seizure reduction than the other patients (p = 0.03). Age at initiation of the KD was not related to eventual seizure outcome (p = 0.6). The KD continues to be an effective, safe, and well tolerated treatment option for infants with intractable epilepsy.