bluuebunny/crossref_metadata_2025_split huggingface dataset:
De novo assembly and analysis of the Artemisia argyi transcriptome and identification of genes involved in terpenoid biosynthesis
Authors: Liu Miaomiao , Zhu Jinhang , Wu Shengbing , Wang Chenkai , Guo Xingyi , Wu Jiawen , Zhou Meiqi 
Published: April 2018

AbstractArtemisia argyi Lev. et Vant. (A. argyi) is widely utilized for moxibustion in Chinese medicine, and the mechanism underlying terpenoid biosynthesis in its leaves is suggested to play an important role in its medicinal use. However, the A. argyi transcriptome has not been sequenced. Herein, we performed RNA sequencing for A. argyi leaf, root and stem tissues to identify as many as possible of the transcribed genes. In total, 99,807 unigenes were assembled by analysing the expression profiles generated from the three tissue types, and 67,446 of those unigenes were annotated in public databases. We further performed differential gene expression analysis to compare leaf tissue with the other two tissue types and identified numerous genes that were specifically expressed or up-regulated in leaf tissue. Specifically, we identified multiple genes encoding significant enzymes or transcription factors related to terpenoid synthesis. This study serves as a valuable resource for transcriptome information, as many transcribed genes related to terpenoid biosynthesis were identified in the A. argyi transcriptome, providing a functional genomic basis for additional studies on molecular mechanisms underlying the medicinal use of A. argyi.
Etidronate prevents dystrophic cardiac calcification by inhibiting macrophage aggregation
Authors: Bauer Carolin , le Saux Olivier , Pomozi Viola , Aherrahrou Redouane , Kriesen Rene , Stölting Stephanie , Liebers Annett , Kessler Thorsten , Schunkert Heribert , Erdmann Jeanette , Aherrahrou Zouhair 
Published: April 2018

AbstractCardiovascular calcification is associated with high risk of vascular disease. This involves macrophage infiltration of injured vascular tissue and osteoclast-related processes. Splenic monocytes from mice, that are predisposed (C3H) or resistant (B6) to calcification, were isolated and differentiated in vitro with M-CSF to generate macrophages, which aggregate to form multinucleated (MN) cells in the presence of RANKL. MN cell formation was significantly decreased in monocytes from resistant compared with calcifying mice. Conditioned media from C3H macrophages strongly induced calcification in vitro. However, medium from B6 macrophages inhibited calcification. An increase in ICAM-1 was detected in conditioned media from C3H macrophages compared with B6, suggesting a key role for this molecule in calcification processes. Due to natural genetic loss of Abcc6, the causal gene for cardiac calcification, C3H mice have reduced plasma levels of inorganic pyrophosphate (PPi), a potential calcification inhibitor. Supplementation of C3H mice with PPi or Etidronate prevented but did not completely reverse cardiac calcification. Our data provide strong evidence of the pathogenesis of macrophages and MNs during tissue calcification and suggest PPi or its analogue Etidronate as a potential inhibitor of MN formation and calcification. Furthermore, the adhesion molecule ICAM-1 was shown to play a key role in calcification.
Potential Orphan Drug Therapy of Intravesical Liposomal Onabotulinumtoxin-A for Ketamine-Induced Cystitis by Mucosal Protection and Anti-inflammation in a Rat Model
Authors: Lee Wei-Chia , Su Chia-Hao , Tain You-Lin , Tsai Cheng-Nan , Yu Chun-Chieh , Chuang Yao-Chi 
Published: April 2018

AbstractKetamine abusers may develop ulcerative cystitis and severe lower urinary tract symptoms, which is a medical dilemma. Recently, researchers have found the endemic of ketamine-induced cystitis worldwide. The intravesical administration of liposome-encapsulated onabotulinumtoxinA (Lipotoxin) might facilitate the healing of the damaged urothelium from liposomes, and reduce the urinary symptoms by onabotulinumtoxinA-induced chemo-denervation. Using female Sprague-Dawley rats, we investigated the effects of Lipotoxin on ketamine-induced cystitis. Functional magnetic resonance imaging, metabolic cage study, and cystometry were conducted. Paraffin-embedded sections were stained. The bladder mucosa and muscle proteins were assessed through Western blotting. We observed that repeated intravesical Lipotoxin instillation could improve suburothelial hemorrhage, recover the urothelial tight junction and adhesion proteins (zonula occludens-1 and E-cadherin), ensure less substance P in the urothelium, inhibit the overexpression of inflammatory mediators (IL-6, TNF-α, nuclear NF-κB, and COX-2) in the detrusor, suppress the upregulation of the mucosal TRPV1 and detrusor M2-mAChR, and ameliorate bladder overactivity in the ketamine-treated rats. These data reveal the mechanisms underlying the action of Lipotoxin in ketamine-induced cystitis of rats, which provide a basis of Lipotoxin for further treating ketamine-induced cystitis in humans.
Age–Period–Cohort Analysis of Trends in Mortality from Drowning in China: Data from the Global Burden of Disease Study 2015
Authors: Wang Zhenkun , Yu Chuanhua , Xiang Henry , Li Gang , Hu Songbo , Tang Jinhui 
Published: April 2018

AbstractThe studies on drowning mortality are very scarce in China, and the aim of this study is to identify the long-term patterns of drowning mortality in China between 1990 and 2015 to provide evidence for further prevention and control on drowning. The mortality data were derived from the Global Burden of Disease Study 2015 and were analyzed with the age–period–cohort framework. This study demonstrated that the age-standardized mortality rates for drowning in both sexes displayed general declining trends with a decrease in the drowning mortality rate for every age group. In the same birth cohort, both sexes witnessed a substantial decline followed by a slight increase in the risk of death from drowning with age after controlling for period deviations. The estimated period and cohort relative risks were found in similar monotonic downward patterns for both sexes, with more reduction for females than for males during the whole study period.
Function of alanine racemase in the physiological activity and cariogenicity of Streptococcus mutans
Authors: Liu Shiyu , Wei Yuan , Zhou Xuedong , Zhang Keke , Peng Xian , Ren Biao , Chen Vivian , Cheng Lei , Li Mingyun 
Published: April 2018

AbstractThe enzyme alanine racemase (Alr) has been a new target for the development of antibacterial drugs based on the involvement of D-Ala in bacterial cell wall biosynthesis. Our previous study noted that Alr is essential for the growth and interspecies competitiveness of S. mutans, the major causative organism of dental caries. However, physiological activity and cariogenicity of S. mutans affected by Alr remains unknown. The current study examined the biofilm biomass, biofilm structure, extracellular polysaccharide (EPS) synthesis, glucosyltransferase (gtf) gene expression, acid production and acid tolerance in the alr-mutant strain. We found that biofilm formation, biofilm structure, and EPS synthesis was in a D-Ala dose-dependent manner. Biofilm structure was loose in alr-mutant group and the ratio of EPS/bacteria was also elevated. Additionally, the expression levels of multiple gtfs were up-regulated, and acid tolerance was decreased. We also established in vivo models of dental caries and found that the incidence and severity of the caries were decreased in the alr-mutant group in comparison to the parental S. mutans group. Our in vivo and in vitro experiments demonstrate that Alr is essential for the cariogenicity of S. mutans and that Alr might be a potential target for the prevention and treatment of caries.
Diversity and bioactive potential of culturable fungal endophytes of Dysosma versipellis; a rare medicinal plant endemic to China
Authors: Tan Xiao-ming , Zhou Ya-qin , Zhou Xiao-lei , Xia Xiang-hua , Wei Ying , He Li-li , Tang Hong-zhen , Yu Li-ying 
Published: April 2018

AbstractThe plant Dysosma versipellis is known for its antimicrobial and anticancer properties but is a rare and vulnerable perennial herb that is endemic to China. In this study, 224 isolates were isolated from various tissues of D. versipellis, and were classified into 53 different morphotypes according to culture characteristics and were identified by sequence analyses of the internal transcribed spacer (ITS) region of the rRNA gene. Although nine strains were not assignable at the phylum level, 44 belonged to at least 29 genera of 15 orders of Ascomycota (93%), Basidiomycota (6%), and Zygomycota (1%). Subsequent assays revealed antimicrobial activities of 19% of endophytic extracts against at least one pathogenic bacterium or fungus. Antimicrobial activity was also determined using the agar diffusion method and was most prominent in extracts from four isolates. Moreover, high performance liquid chromatography (HPLC) and ultra-performance liquid chromatography-quadrupole-time of flight mass spectrometry analyses (UPLC–QTOF MS) showed the presence of podophyllotoxin in two Fusarium strains, with the highest yield of 277 μg/g in Fusarium sp. (WB5121). Taken together, the present data suggest that various endophytic fungi of D. versipellis could be exploited as sources of novel natural antimicrobial or anticancer agents.
Effect of dietary probiotics on the semen traits and antioxidative activity of male broiler breeders
Authors: Inatomi Takio , Otomaru Konosuke 
Published: April 2018

AbstractThis study aimed to investigate the effect of probiotics on the intestinal morphology, intestinal microflora, oxidative activity (biological antioxidant potential), and semen quality of male broiler breeders. For this, 180 Cobb male broiler breeders (60 weeks of age) were randomly distributed into two groups. The control group was fed a basal diet, and the probiotics group was fed basal diet supplemented with probiotics for 6 weeks. Probiotics containing Bacillus amyloliquefaciens TOA5001 improved the above mentioned characteristics of the male broiler breeders. Thus, B. amyloliquefaciens TOA5001 might improve the reproductive performance of male broiler breeders.
Microcrack healing in non-ferrous metal tubes through eddy current pulse treatment
Authors: Xu Wenchen , Yang Chuan , Yu Haiping , Jin Xueze , Guo Bin , Shan Debin 
Published: April 2018

AbstractThis study proposed a novel method to heal microcrack within Mg alloy tubes using high density eddy current pulse treatment (ECPT). Through electromagnetic induction inside a copper coil connected with a high density pulse power source supply, the high density (greater than 5 × 109 A/m2) and short duration eddy current was generated in tube specimens of Mg alloy. The results show that the microcracks in tube specimens was healed evidently and the mechanical properties of the tubes subjected to ECPT were improved simultaneously. The crack healing during ECPT was ascribed to not only the thermal stress around the microcrack tips and the softening or melting of metals in the vicinity of microcrack tips, but also the squeezing action acted by the Lorentz force. In the inward-discharging scheme, both the compressive radial stress and tangential stress induced by the Lorentz force contributed to more sufficient crack healing and thus better mechanical properties of tube specimens after the ECPT experiment, compared to the outward-discharging scheme. The ECPT can heal microcracks automatically without directly contacting tubular specimens and is not limited by the length of tubular workpieces, exhibiting great potential for crack healing in non-ferrous alloy tubes.
Morphological characterization of NG2 glia and their association with neuroglial cells in the 3-nitropropionic acid–lesioned striatum of rat
Authors: Jin Xuyan , Riew Tae-Ryong , Kim Hong Lim , Choi Jeong-Heon , Lee Mun-Yong 
Published: April 2018

AbstractOur aim was to examine the spatiotemporal profiles and phenotypic characteristics of neuron-glia antigen 2 (NG2) glia and their associations with neuroglial cells in striatal lesions due to the mitochondrial toxin 3-nitropropionic acid (3-NP). In control striatum, weak NG2 immunoreactivity was restricted to resting NG2 glia with thin processes, but prominent NG2 expression was noted on activated microglia/macrophages, and reactive NG2 glia in the lesion core after 3-NP injection. Activation of NG2 glia, including enhanced proliferation and morphological changes, had a close spatiotemporal relationship with infiltration of activated microglia into the lesion core. Thick and highly branched processes of reactive NG2 glia formed a cellular network in the astrocyte-free lesion core and primarily surrounded developing cavities 2–4 weeks post-lesion. NG2 glia became associated with astrocytes in the lesion core and the border of cavities over the chronic interval of 4–8 weeks. Immunoelectron microscopy indicated that reactive NG2 glia had large euchromatic nuclei with prominent nucleoli and thick and branched processes that ramified distally. Thus, our data provide detailed information regarding the morphologies of NG2 glia in the lesion core, and support the link between transformation of NG2 glia to the reactive form and microglial activation/recruitment in response to brain insults.
Extensive T cell cross-reactivity between diverse seasonal influenza strains in the ferret model
Authors: Reber Adrian J. , Music Nedzad , Kim Jin Hyang , Gansebom Shane , Chen Jufu , York Ian 
Published: April 2018

AbstractInfluenza virus causes widespread, yearly epidemics by accumulating surface protein mutations to escape neutralizing antibodies established from prior exposure. In contrast to antibody epitopes, T cell mediated immunity targets influenza epitopes that are more highly conserved and have potential for cross-protection. The extent of T cell cross-reactivity between a diverse array of contemporary and historical influenza strains was investigated in ferrets challenged with 2009 pandemic H1N1 influenza or the seasonal H3N2 strain, A/Perth/16/2009. Post-challenge cell-mediated immune responses demonstrated extensive cross-reactivity with a wide variety of contemporary and historical influenza A strains as well as influenza B. Responses in peripheral blood were undetectable by 36d post-challenge, but cross-reactivity persisted in spleen. The strongest responses targeted peptides from the NP protein and demonstrated cross-reactivity in both the CD4+ and CD8+ T cell populations. Cross-reactive CD4+ T cells also targeted HA and NA epitopes, while cross-reactive CD8+ T cells targeted internal M1, NS2, and PA. T cell epitopes demonstrated extensive cross-reactivity between diverse influenza strains in outbred animals, with NP implicated as a significant antigenic target demonstrating extensive cross-reactivity for both CD4+ and CD8+ T cells.
Ascorbic acid induces global epigenetic reprogramming to promote meiotic maturation and developmental competence of porcine oocytes
Authors: Yu Xiao-Xia , Liu Yun-Hua , Liu Xiao-Man , Wang Pei-Chao , Liu Shuai , Miao Jia-Kun , Du Zhi-Qiang , Yang Cai-Xia 
Published: April 2018

AbstractL-ascorbic acid (Vitamin C) can enhance the meiotic maturation and developmental competence of porcine oocytes, but the underlying molecular mechanism remains obscure. Here we show the role of ascorbic acid in regulating epigenetic status of both nucleic acids and chromatin to promote oocyte maturation and development in pigs. Supplementation of 250 μM L-ascorbic acid 2-phosphate sesquimagnesium salt hydrate (AA2P) during in vitro maturation significantly enhanced the nuclear maturation (as indicated by higher rate of first polar body extrusion and increased Bmp15 mRNA level), reduced level of reactive oxygen species, and promoted developmental potency (higher cleavage and blastocyst rates of parthenotes, and decreased Bax and Caspase3 mRNA levels in blastocysts) of pig oocytes. AA2P treatment caused methylation erasure in mature oocytes on nucleic acids (5-methylcytosine (5 mC) and N
6
-methyladenosine (m6A)) and histones (Histone H3 trimethylations at lysines 27, H3K27me3), but establishment of histone H3 trimethylations at lysines 4 (H3K4me3) and 36 (H3K36me3). During the global methylation reprogramming process, levels of TET2 (mRNA and protein) and Dnmt3b (mRNA) were significantly elevated, but simultaneously DNMT3A (mRNA and protein), and also Hif-1α, Hif-2α, Tet3, Mettl14, Kdm5b and Eed (mRNA) were significantly inhibited. Our findings support that ascorbic acid can reprogram the methylation status of not only DNA and histone, but also RNA, to improve pig oocyte maturation and developmental competence.
Stress-induced reverse martensitic transformation in a Ti-51Ni (at%) alloy aged under uniaxial stress
Authors: Xiao Fei , Chen Hong , Jin Xuejun , Nie Zhihua , Kakeshita Tomoyuki , Fukuda Takashi 
Published: April 2018

AbstractTi-51Ni (at%) alloys including coherent precipitates of Ti3Ni4 exhibits thermally-induced B2-R transformation. If the Ti3Ni4 is formed under tensile stress, it orientates preferentially so that its habit plane becomes perpendicular to the tensile axis. In such specimens, stress-induced reverse R-B2 transformation is reported to occur. In the present study, the stress-induced reverse R-B2 transformation behavior was studied by infrared camera and in situ X-ray analysis. The infrared camera observation revealed that the temperature of the specimen decreases homogeneously by the application of tensile stress within the resolution of the camera. The in situ X-ray analysis revealed that stress-induced reverse R-B2 transformation and rearrangement of variants of the R-phase occurs simultaneously in the specimen.
No Prophylactic Antibiotic Use for Young Children’s Intussusception with Low-risk Infection after Successful Air Enema Reduction
Authors: Zhang Yuan , Zou Wen , Ren Lemeng , Zhang Yinghui , Sun Zhaohui , Liu Huandi , Liu Qian , Si Chunfeng , Jia Hongying 
Published: April 2018

AbstractThe Chinese government has issued the policy of promulgating the clinical use of antibacterial drugs since 2011. Prophylactic antibiotic use is a challenging problem among young children with intussusception after successful air enema reduction. There were limited data regarding the clinical value of prophylactic antibiotics for intussusception with low-risk infections. A retrospective non-randomized comparative study was conducted among 188 young children with intussusception after successful air enema reduction between January 1, 2011 and December 30, 2013. Among these children, 51 received prophylactic antibiotics and 137 did not receive antibiotics. Our results showed that there were no significant differences in age, gender, weight, admission period, reduction interval, axillary temperature, leukocytes, neutrophils, lymphocytes, monocytes, mesenteric lymph nodes and complications between groups (P > 0.05). The national policy had significantly improved clinical use of antibiotic for young children with low-risk intussusception (OR < 0.001, P < 0.001). Inpatients days were longer for children used antibiotics than those who did not (median, 27.0 hours vs 21.0 hours, P = 0.003). Prophylactic antibiotics appeared to be of little value after the successful air enema reduction of intussusception in young children with low-risk infection. Policy intervention is effective for antibiotic use in China.
Shallow deformation of the San Andreas fault 5 years following the 2004 Parkfield earthquake (Mw6) combining ERS2 and Envisat InSAR
Authors: Bacques Guillaume , de Michele Marcello , Raucoules Daniel , Aochi Hideo , Rolandone Frédérique 
Published: April 2018

AbstractThis study focuses on the shallow deformation that occurred during the 5 years following the Parkfield earthquake (28/09/2004, Mw 6, San Andreas Fault, California). We use Synthetic Aperture Radar interferometry (InSAR) to provide precise measurements of transient deformations after the Parkfield earthquake between 2005 and 2010. We propose a method to combine both ERS2 and ENVISAT interferograms to increase the temporal data sampling. Firstly, we combine 5 years of available Synthetic Aperture Radar (SAR) acquisitions including both ERS-2 and Envisat. Secondly, we stack selected interferograms (both from ERS2 and Envisat) for measuring the temporal evolution of the ground velocities at given time intervals. Thanks to its high spatial resolution, InSAR could provide new insights on the surface fault motion behavior over the 5 years following the Parkfield earthquake. As a complement to previous studies in this area, our results suggest that shallow transient deformations affected the Creeping-Parkfield-Cholame sections of the San Andreas Fault after the 2004 Mw6 Parkfield earthquake.
An Implantable Peripheral Nerve Recording and Stimulation System for Experiments on Freely Moving Animal Subjects
Authors: Lee Byunghun , Koripalli Mukhesh K. , Jia Yaoyao , Acosta Joshua , Sendi M. S. E. , Choi Yoonsu , Ghovanloo Maysam 
Published: April 2018

AbstractA new study with rat sciatic nerve model for peripheral nerve interfacing is presented using a fully-implanted inductively-powered recording and stimulation system in a wirelessly-powered standard homecage that allows animal subjects move freely within the homecage. The Wireless Implantable Neural Recording and Stimulation (WINeRS) system offers 32-channel peripheral nerve recording and 4-channel current-controlled stimulation capabilities in a 3 × 1.5 × 0.5 cm3 package. A bi-directional data link is established by on-off keying pulse-position modulation (OOK-PPM) in near field for narrow-band downlink and 433 MHz OOK for wideband uplink. An external wideband receiver is designed by adopting a commercial software defined radio (SDR) for a robust wideband data acquisition on a PC. The WINeRS-8 prototypes in two forms of battery-powered headstage and wirelessly-powered implant are validated in vivo, and compared with a commercial system. In the animal study, evoked compound action potentials were recorded to verify the stimulation and recording capabilities of the WINeRS-8 system with 32-ch penetrating and 4-ch cuff electrodes on the sciatic nerve of awake freely-behaving rats. Compared to the conventional battery-powered system, WINeRS can be used in closed-loop recording and stimulation experiments over extended periods without adding the burden of carrying batteries on the animal subject or interrupting the experiment.
The Hepatitis Delta Virus accumulation requires paraspeckle components and affects NEAT1 level and PSP1 localization
Authors: Beeharry Yasnee , Goodrum Gabrielle , Imperiale Christian J. , Pelchat Martin 
Published: April 2018

AbstractThe Hepatitis Delta Virus (HDV) relies mainly on host proteins for its replication. We previously identified that PSF and p54nrb associate with the HDV RNA genome during viral replication. Together with PSP1, these proteins are part of paraspeckles, which are subnuclear bodies nucleated by the long non-coding RNA NEAT1. In this work, we established the requirement for PSF, p54nrb and PSP1 in HDV replication using RNAi-mediated knockdown in HEK-293 cells replicating the HDV RNA genome. We determined that HDV replication induces the delocalization of PSP1 to cytoplasmic foci containing PABP and increases NEAT1 level causing an enlargement of NEAT1 foci. Overall, our data support a role for the main paraspeckles proteins in HDV life cycle and indicate that HDV replication causes a cellular stress and induces both a delocalization of the PSP1 to the cytoplasm and a disruption of paraspeckles.