bluuebunny/crossref_metadata_2025_split huggingface dataset:
NEAT1_2 functions as a competing endogenous RNA to regulate ATAD2 expression by sponging microRNA-106b-5p in papillary thyroid cancer
Authors: Sun Wei , Lan Xiabin , Zhang Hao , Wang Zhihong , Dong Wenwu , He Liang , Zhang Ting , Zhang Ping , Liu Jinhao , Qin Yuan 
Published: March 2018

AbstractNuclear paraspeckle assembly transcript 1 (NEAT1), a long non-coding RNA (lncRNA), is a core structural component of paraspeckles and is essential for paraspeckle formation. NEAT1 comprises two different isoforms: NEAT1_1 (3.7 kb) and NEAT1_2 (23 kb). Recently, NEAT1 has been shown to have oncogenic roles and to facilitate tumorigenesis in various human cancers. However, the function of NEAT1 in papillary thyroid cancer (PTC) is not well understood. The relative expression levels of NEAT1_2, ATPase family AAA domain-containing protein 2 (ATAD2), and microRNA-106b-5p (miR-106b-5p) were assessed via quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR). Four PTC cell lines were used to detect the relative expression of NEAT1_2. The effects of NEAT1_2 on PTC cells were studied by RNA interference approaches in vitro. The effects of NEAT1_2 on downstream proteins were detected by western blotting. The underlying mechanism was clarified by a rescue experiment, and three dual-luciferase reporter assays. NEAT1_2 expression was markedly increased in PTC tissues and the PTC cell lines (K1 and TPC1). The relative expression level of NEAT1_2 was positively associated with TNM stage and tumor size. NEAT1_2 knockdown led to a significant inhibition of growth and metastasis, and induced apoptosis in PTC cells. Knockdown of NEAT1_2 significantly inhibited malignant biological behavior by downregulating the oncogene ATAD2. In addition, NEAT1_2 could act as a competing endogenous RNA to regulate the expression of ATAD2 through downregulating miR-106b-5p. Taken together, our results indicated that NEAT1_2 is overexpressed in PTC. NEAT1_2 could function as a competing endogenous RNA to regulate ATAD2 expression by sponging miR-106b-5p in PTC. Targeting NEAT1_2 could be a promising therapeutic strategy for patients with PTC.
Benchmarking common quantification strategies for large-scale phosphoproteomics
Authors: Hogrebe Alexander , von Stechow Louise , Bekker-Jensen Dorte B. , Weinert Brian T. , Kelstrup Christian D. , Olsen Jesper V. 
Published: March 2018

AbstractComprehensive mass spectrometry (MS)-based proteomics is now feasible, but reproducible quantification remains challenging, especially for post-translational modifications such as phosphorylation. Here, we compare the most popular quantification techniques for global phosphoproteomics: label-free quantification (LFQ), stable isotope labeling by amino acids in cell culture (SILAC) and MS2- and MS3-measured tandem mass tags (TMT). In a mixed species comparison with fixed phosphopeptide ratios, we find LFQ and SILAC to be the most accurate techniques. MS2-based TMT yields the highest precision but lowest accuracy due to ratio compression, which MS3-based TMT can partly rescue. However, MS2-based TMT outperforms MS3-based TMT when analyzing phosphoproteome changes in the DNA damage response, since its higher precision and larger identification numbers allow detection of a greater number of significantly regulated phosphopeptides. Finally, we utilize the TMT multiplexing capabilities to develop an algorithm for determining phosphorylation site stoichiometry, showing that such applications benefit from the high accuracy of MS3-based TMT.
Scalable WDM phase regeneration in a single phase-sensitive amplifier through optical time lenses
Authors: Guan Pengyu , Da Ros Francesco , Lillieholm Mads , Kjøller Niels-Kristian , Hu Hao , Røge Kasper Meldgaard , Galili Michael , Morioka Toshio , Oxenløwe Leif Katsuo 
Published: March 2018

AbstractOptical data regeneration is attractive, due to its potential to increase transmission reach and data throughput in communication systems, and several interesting proposals have been made. However, efficient and scalable solutions for regeneration of multiple parallel wavelength channels have been elusive, constituting a key challenge, which must be overcome for optical regeneration to have any prospect of being adapted in actual communication systems. Here we report a scalable wavelength-division multiplexing (WDM) regeneration scheme for phase only regeneration, which satisfies the multichannel requirement, using a set of optical time-lens-based Fourier processors combined with a single phase-sensitive amplifier (PSA). We describe the concept theoretically, and experimentally demonstrate simultaneous regeneration of 16 WDM channels with 50-GHz spacing, each carrying 10-Gbit/s DPSK phase-modulated data. The proposed scheme relies on ultrafast broadband optical processing and is inherently scalable in modulation speed and channel number.
Functionally distinct and selectively phosphorylated GPCR subpopulations co-exist in a single cell
Authors: Shen Ao , Nieves-Cintron Madeline , Deng Yawen , Shi Qian , Chowdhury Dhrubajyoti , Qi Jinyi , Hell Johannes W. , Navedo Manuel F. , Xiang Yang K. 
Published: March 2018

AbstractG protein-coupled receptors (GPCRs) transduce pleiotropic intracellular signals in a broad range of physiological responses and disease states. Activated GPCRs can undergo agonist-induced phosphorylation by G protein receptor kinases (GRKs) and second messenger-dependent protein kinases such as protein kinase A (PKA). Here, we characterize spatially segregated subpopulations of β2-adrenergic receptor (β2AR) undergoing selective phosphorylation by GRKs or PKA in a single cell. GRKs primarily label monomeric β2ARs that undergo endocytosis, whereas PKA modifies dimeric β2ARs that remain at the cell surface. In hippocampal neurons, PKA-phosphorylated β2ARs are enriched in dendrites, whereas GRK-phosphorylated β2ARs accumulate in soma, being excluded from dendrites in a neuron maturation-dependent manner. Moreover, we show that PKA-phosphorylated β2ARs are necessary to augment the activity of L-type calcium channel. Collectively, these findings provide evidence that functionally distinct subpopulations of this prototypical GPCR exist in a single cell.
The entropic cost of quantum generalized measurements
Authors: Mancino Luca , Sbroscia Marco , Roccia Emanuele , Gianani Ilaria , Somma Fabrizia , Mataloni Paolo , Paternostro Mauro , Barbieri Marco 
Published: March 2018

AbstractLandauer’s principle introduces a symmetry between computational and physical processes: erasure of information, a logically irreversible operation, must be underlain by an irreversible transformation dissipating energy. Monitoring micro- and nano-systems needs to enter into the energetic balance of their control; hence, finding the ultimate limits is instrumental to the development of future thermal machines operating at the quantum level. We report on the experimental investigation of a lower bound to the irreversible entropy associated to generalized quantum measurements on a quantum bit. We adopted a quantum photonics gate to implement a device interpolating from the weakly disturbing to the fully invasive and maximally informative regime. Our experiment prompted us to introduce a bound taking into account both the classical result of the measurement and the outcoming quantum state; unlike previous investigation, our entropic bound is based uniquely on measurable quantities. Our results highlight what insights the information-theoretic approach provides on building blocks of quantum information processors.
Plasma IL-23 and IL-5 as surrogate markers of lesion metabolic activity in patients with hepatic alveolar echinococcosis
Authors: Tuxun Tuerhongjiang , Apaer Shadike , Ma Hai-Zhang , Zhao Jin-Ming , Lin Ren-Yong , Aji Tuerganaili , Shao Ying-Mei , Wen Hao 
Published: March 2018

AbstractFluorodeoxyglucose (FDG) uptake by alveolar echinococcosis (AE) liver lesions is a signal of their metabolic activity and of disease progression. In order to find a surrogate marker for this status, we investigated whether parameters of the peripheral and/or periparasitic immune responses were associated with metabolic activity in a prospective case-control study of 30 AE patients and 22 healthy controls. Levels of 18 cytokines and chemokines, representative of innate and adaptive immune responses, were assessed in plasma and peripheral cells of two groups of patients with (MAAE) and without (MIAE) metabolically active lesions, and in the liver of MAAE patients. Mixed cytokine profile was observed in the peripheral blood of AE patients, with a predominance of Th2, Th17 and Treg responses. Among the detected markers only plasma IL-5 and IL-23, more elevated in MAAE patients, were found discriminant. Discrimination between MAAE and MIAE patients obtained by using IL-23 was improved when IL-5 was used in combination. The combination of elevated levels of IL-5 and IL-23 is significantly associated with FDG uptake at PET scan. It offers a new tool for the follow-up of AE patients which could substitute to FDG-PET whenever non-available to assess disease progression.
Multi-scale X-ray computed tomography to detect and localize metal-based nanomaterials in lung tissues of in vivo exposed mice
Authors: Chaurand Perrine , Liu Wei , Borschneck Daniel , Levard Clément , Auffan Mélanie , Paul Emmanuel , Collin Blanche , Kieffer Isabelle , Lanone Sophie , Rose Jérôme , Perrin Jeanne 
Published: March 2018

AbstractIn this methodological study, we demonstrated the relevance of 3D imaging performed at various scales for the ex vivo detection and location of cerium oxide nanomaterials (CeO2-NMs) in mouse lung. X-ray micro-computed tomography (micro-CT) with a voxel size from 14 µm to 1 µm (micro-CT) was combined with X-ray nano-computed tomography with a voxel size of 63 nm (nano-CT). An optimized protocol was proposed to facilitate the sample preparation, to minimize the experimental artifacts and to optimize the contrast of soft tissues exposed to metal-based nanomaterials (NMs). 3D imaging of the NMs biodistribution in lung tissues was consolidated by combining a vast variety of techniques in a correlative approach: histological observations, 2D chemical mapping and speciation analysis were performed for an unambiguous detection of NMs. This original methodological approach was developed following a worst-case scenario of exposure, i.e. high dose of exposure with administration via intra-tracheal instillation. Results highlighted both (i) the non-uniform distribution of CeO2-NMs within the entire lung lobe (using large field-of-view micro-CT) and (ii) the detection of CeO2-NMs down to the individual cell scale, e.g. macrophage scale (using nano-CT with a voxel size of 63 nm).
A Unified Approach to Nonlinear Transformation Materials
Authors: Sklan Sophia R. , Li Baowen 
Published: March 2018

AbstractThe advances in geometric approaches to optical devices due to transformation optics has led to the development of cloaks, concentrators, and other devices. It has also been shown that transformation optics can be used to gravitational fields from general relativity. However, the technique is currently constrained to linear devices, as a consistent approach to nonlinearity (including both the case of a nonlinear background medium and a nonlinear transformation) remains an open question. Here we show that nonlinearity can be incorporated into transformation optics in a consistent way. We use this to illustrate a number of novel effects, including cloaking an optical soliton, modeling nonlinear solutions to Einstein’s field equations, controlling transport in a Debye solid, and developing a set of constitutive to relations for relativistic cloaks in arbitrary nonlinear backgrounds.
Renormalization of the critical exponent for the shear modulus of magnetoactive elastomers
Authors: Snarskii Andrei A. , Kalita Viktor M. , Shamonin Mikhail 
Published: March 2018

AbstractIt is shown that the critical exponent for the effective shear modulus of a composite medium where a compliant polymer matrix is filled with ferromagnetic particles may significantly depend on the external magnetic field. The physical consequence of this dependence is the critical behavior of the relative magnetorheological effect.
Use of quercetin in animal feed: effects on the P-gp expression and pharmacokinetics of orally administrated enrofloxacin in chicken
Authors: Bhutto Zohaib Ahmed , He Fang , Zloh Mire , Yang Jing , Huang Jinhu , Guo Tingting , Wang Liping 
Published: March 2018

AbstractModulation of P-glycoprotein (P-gp, encoded by Mdr1) by xenobiotics plays central role in pharmacokinetics of various drugs. Quercetin has a potential to modulate P-gp in rodents, however, its effects on P-gp modulation in chicken are still unclear. Herein, study reports role of quercetin in modulation of P-gp expression and subsequent effects on the pharmacokinetics of enrofloxacin in broilers. Results show that P-gp expression was increased in a dose-dependent manner following exposure to quercetin in Caco-2 cells and tissues of chicken. Absorption rate constant and apparent permeability coefficient of rhodamine 123 were decreased, reflecting efflux function of P-gp in chicken intestine increased by quercetin. Quercetin altered pharmacokinetic of enrofloxacin by decreasing area under curve, peak concentration, and time to reach peak concentration and by increasing clearance rate. Molecular docking shows quercetin can form favorable interactions with binding pocket of chicken xenobiotic receptor (CXR). Results provide convincing evidence that quercetin induced P-gp expression in tissues by possible interaction with CXR, and consequently reducing bioavailability of orally administered enrofloxacin through restricting its intestinal absorption and liver/kidney clearance in broilers. The results can be further extended to guide reasonable use of quercetin to avoid drug-feed interaction occurred with co-administered enrofloxacin or other similar antimicrobials.
Systematic review and network meta-analysis of treatment strategies for asymptomatic carotid disease
Authors: Barkat Mohamed , Roy Iain , Antoniou Stavros A. , Torella Francesco , Antoniou George A. 
Published: March 2018

AbstractWe aim to perform a systematic review and meta-analysis to investigate outcomes of treatment strategies for asymptomatic carotid disease. We searched electronic bibliographic sources (MEDLINE, EMBASE, CINAHL and CENTRAL) to identify randomised controlled trials (RCT) reporting comparative outcomes of carotid endarterectomy (CEA), carotid stenting (CAS) and best medical therapy (BMT) in asymptomatic carotid disease. We performed pairwise meta-analysis applying random or fixed-effects models and reported the results as the odds ratio (OR) or risk difference (RD) and 95% confidence interval (CI). We also performed a network meta-analysis and obtained a hierarchy of the competing interventions using rankograms and the surface under the cumulative ranking curve and mean ranks. Stroke and death within 30 days and during follow up were the primary outcome endpoints. Eleven RCTs were identified reporting a total of 8,954 patients. Compared to BMT, CEA reduces the odds of long-term mortality (OR 0.70, 95% CI 0.43, 1.12) and ipsilateral stroke (OR 0.59 95% CI 0.50, 0.71). Network meta-analyses league table demonstrated that BMT is superior to CEA and CAS in terms of perioperative stroke risk and mortality. CEA is the preferred method to reduce the long-term risk of ipsilateral stroke and mortality for patients with asymptomatic carotid disease.
Atlantic deep water circulation during the last interglacial
Authors: Luo Yiming , Tjiputra Jerry , Guo Chuncheng , Zhang Zhongshi , Lippold Jörg 
Published: March 2018

AbstractUnderstanding how the Atlantic Meridional Overturning Circulation (AMOC) evolved during crucial past geological periods is important in order to decipher the interplay between ocean dynamics and global climate change. Previous research, based on geological proxies, has provided invaluable insights into past AMOC changes. However, the causes of the changes in water mass distributions in the Atlantic during different periods remain mostly elusive. Using a state-of-the-art Earth system model, we show that the bulk of NCW in the deep South Atlantic Ocean below 4000 m migrated from the western basins at 125 ka to the eastern basins at 115 ka, though the AMOC strength is only slightly reduced. These changes are consistent with proxy records, and it is mainly due to more penetration of the AABW at depth at 115 ka, as a result of a larger density of AABW formed at 115 ka. Our results show that depth changes in regional deep water pathways can result in large local changes, while the overall AMOC structure hardly changes. Future research should thus be careful when interpreting single proxy records in terms of large-scale AMOC changes, and considering variability of water-mass distributions on sub-basin scale would give more comprehensive interpretations of sediment records.
Effects of root pruning radius and time on yield of tuberous roots and resource allocation in a crop of Helianthus tuberosus L.
Authors: Gao Kai , Zhu Tiexia , Wang Lin , Gao Yang 
Published: March 2018

AbstractThe production of tuberous roots is usually reduced by vigorous vegetative growth because of the competition for resource between the vegetative parts and reproductive organs. In this study, we conducted root pruning to examine the vigorous vegetative growth by regulating root growth, subsequently limiting vegetative growth and improving tuber yield. Compared with the control, stem, tuber, and root biomasses were all improved, whereas both flower and leaf biomasses were increased. Tuber biomass was improved by 23.48% to 50.32%, with the largest tuber biomass obtained at root cutting radius 4/5 R. With delayed root cutting time, tuber and root biomasses increased first and then decreased. The largest tuber biomass was obtained at 65 seedling stage. With a delay in root cutting time, the trend line of aboveground, underground, and total biomasses changed gradually. However, whereas underground and total biomasses showed a gradually increasing, aboveground biomass showed a decreasing. The values of stem-leaf and shoot-root ratios under different root cutting were higher than those of the control. With a delay in root cutting time, stem-leaf ratio showed an initial increase and then decreased with largest value being obtained at 80 seedling stage, whereas the largest shoot-root ratio was obtained at 115 seedling stage.
100- kyr cyclicity in volcanic ash emplacement: evidence from a 1.1 Myr tephra record from the NW Pacific
Authors: Schindlbeck Julie C. , Jegen Marion , Freundt Armin , Kutterolf Steffen , Straub Susanne M. , Mleneck-Vautravers Maryline J. , McManus Jerry F. 
Published: March 2018

AbstractIt is a longstanding observation that the frequency of volcanism periodically changes at times of global climate change. The existence of causal links between volcanism and Earth’s climate remains highly controversial, partly because most related studies only cover one glacial cycle. Longer records are available from marine sediment profiles in which the distribution of tephras records frequency changes of explosive arc volcanism with high resolution and time precision. Here we show that tephras of IODP Hole U1437B (northwest Pacific) record a cyclicity of explosive volcanism within the last 1.1 Myr. A spectral analysis of the dataset yields a statistically significant spectral peak at the ~100 kyr period, which dominates the global climate cycles since the Middle Pleistocene. A time-domain analysis of the entire eruption and δ18O record of benthic foraminifera as climate/sea level proxy shows that volcanism peaks after the glacial maximum and ∼13 ± 2 kyr before the δ18O minimum right at the glacial/interglacial transition. The correlation is especially good for the last 0.7 Myr. For the period 0.7–1.1 Ma, during the Middle Pleistocene Transition (MPT), the correlation is weaker, since the 100 kyr periodicity in the δ18O record diminishes, while the tephra record maintains its strong 100 kyr periodicity.
Combination of sodium-glucose cotransporter 2 inhibitor and dipeptidyl peptidase-4 inhibitor in type 2 diabetes: a systematic review with meta-analysis
Authors: Min Se Hee , Yoon Jeong-Hwa , Moon Sun Joon , Hahn Seokyung , Cho Young Min 
Published: March 2018

AbstractSodium glucose cotransporter 2 (SGLT2) inhibitors and dipeptidyl peptidase-4 (DPP4) inhibitors have complementary mode of action. For the meta-analysis comparing the efficacy and safety between SGLT2 inhibitor plus DPP4 inhibitor (SGLT2i/DPP4i) and placebo plus DPP4 inhibitor (PCB/DPP4i) in patients with type 2 diabetes mellitus (T2DM), we selected randomized controlled trials from electronic databases by predefined criteria. The primary outcome of interest was the change in glycated hemoglobin A1c (HbA1c) from baseline. Of 605 potentially relevant studies, 7 eligible RCTs comprising 2,082 patients were included.SGLT2i/DPP4i showed a greater reduction in HbA1c (weighted mean difference −0.6%, 95% CI −0.7 to −0.5%), fasting plasma glucose, 2 h postprandial plasma glucose, and body weight compared to PCB/DPP4i. The risk of hypoglycemia increased in SGLT2i/DPP4i compared to that in PCB/DPP4i only when insulin or sulfonylureas were included as a background therapy. The risk of urinary tract infection was not increased in SGLT2i/DPP4i; however, the risk of genital infection increased upon adding SGLT2 inhibitors to pre-existing DPP4 inhibitors. In conclusion, compared to PCB/DPP4i, SGLT2i/DPP4i achieved better glycemic control and greater weight reduction without increasing the risk of hypoglycemia and urinary tract infection in patients with inadequately controlled T2DM.
Trichostatin A inhibits the activation of Hepatic stellate cells by Increasing C/EBP-α Acetylation in vivo and in vitro
Authors: Ding Di , Chen Lin-Lin , Zhai Ying-Zhen , Hou Chen-Jian , Tao Li-Li , Lu Shu-Han , Wu Jian , Liu Xiu-Ping 
Published: March 2018

AbstractReversal of activated hepatic stellate cells (HSCs) to a quiescent state and apoptosis of activated HSCs are key elements in the reversion of hepatic fibrosis. CCAAT/enhancer binding protein α (C/EBP-α) has been shown to inhibit HSC activation and promote its apoptosis. This study aims to investigate how C/EBP-α acetylation affects the fate of activated HSCs. Effects of a histone deacetylation inhibitor trichostatin A (TSA) on HSC activation were evaluated in a mouse model of liver fibrosis caused by carbon tetrachloride (CCl4) intoxication. TSA was found to ameliorate CCl4-induced hepatic fibrosis and improve liver function through increasing the protein level and enhancing C/EBP-α acetylation in the mouse liver. C/EBP-α acetylation was determined in HSC lines in the presence or absence of TSA, and the lysine residue K276 was identified as a main acetylation site in C/EBP-α protein. C/EBP-α acetylation increased its stability and protein level, and inhibited HSC activation. The present study demonstrated that C/EBP-α acetylation increases the protein level by inhibiting its ubiquitination-mediated degradation, and may be involved in the fate of activated HSCs. Use of TSA may confer an option in minimizing hepatic fibrosis by suppressing HSC activation, a key process in the initiation and progression of hepatic fibrosis.