bluuebunny/crossref_metadata_2025_split huggingface dataset:
Sculpting and fusing biomimetic vesicle networks using optical tweezers
Authors: Bolognesi Guido , Friddin Mark S. , Salehi-Reyhani Ali , Barlow Nathan E. , Brooks Nicholas J. , Ces Oscar , Elani Yuval 
Published: May 2018

AbstractConstructing higher-order vesicle assemblies has discipline-spanning potential from responsive soft-matter materials to artificial cell networks in synthetic biology. This potential is ultimately derived from the ability to compartmentalise and order chemical species in space. To unlock such applications, spatial organisation of vesicles in relation to one another must be controlled, and techniques to deliver cargo to compartments developed. Herein, we use optical tweezers to assemble, reconfigure and dismantle networks of cell-sized vesicles that, in different experimental scenarios, we engineer to exhibit several interesting properties. Vesicles are connected through double-bilayer junctions formed via electrostatically controlled adhesion. Chemically distinct vesicles are linked across length scales, from several nanometres to hundreds of micrometres, by axon-like tethers. In the former regime, patterning membranes with proteins and nanoparticles facilitates material exchange between compartments and enables laser-triggered vesicle merging. This allows us to mix and dilute content, and to initiate protein expression by delivering biomolecular reaction components.
Top-down descending facilitation of spinal sensory excitatory transmission from the anterior cingulate cortex
Authors: Chen Tao , Taniguchi Wataru , Chen Qi-Yu , Tozaki-Saitoh Hidetoshi , Song Qian , Liu Ren-Hao , Koga Kohei , Matsuda Tsuyoshi , Kaito-Sugimura Yae , Wang Jian , Li Zhi-Hua , Lu Ya-Cheng , Inoue Kazuhide , Tsuda Makoto , Li Yun-Qing , Nakatsuka Terumasa , Zhuo Min 
Published: May 2018

AbstractSpinal sensory transmission is under descending biphasic modulation, and descending facilitation is believed to contribute to chronic pain. Descending modulation from the brainstem rostral ventromedial medulla (RVM) has been the most studied, whereas little is known about direct corticospinal modulation. Here, we found that stimulation in the anterior cingulate cortex (ACC) potentiated spinal excitatory synaptic transmission and this modulation is independent of the RVM. Peripheral nerve injury enhanced the spinal synaptic transmission and occluded the ACC-spinal cord facilitation. Inhibition of ACC reduced the enhanced spinal synaptic transmission caused by nerve injury. Finally, using optogenetics, we showed that selective activation of ACC-spinal cord projecting neurons caused behavioral pain sensitization, while inhibiting the projection induced analgesic effects. Our results provide strong evidence that ACC stimulation facilitates spinal sensory excitatory transmission by a RVM-independent manner, and that such top-down facilitation may contribute to the process of chronic neuropathic pain.
The rise of South–South trade and its effect on global CO2 emissions
Authors: Meng Jing , Mi Zhifu , Guan Dabo , Li Jiashuo , Tao Shu , Li Yuan , Feng Kuishuang , Liu Junfeng , Liu Zhu , Wang Xuejun , Zhang Qiang , Davis Steven J. 
Published: May 2018

AbstractEconomic globalization and concomitant growth in international trade since the late 1990s have profoundly reorganized global production activities and related CO2 emissions. Here we show trade among developing nations (i.e., South–South trade) has more than doubled between 2004 and 2011, which reflects a new phase of globalization. Some production activities are relocating from China and India to other developing countries, particularly raw materials and intermediate goods production in energy-intensive sectors. In turn, the growth of CO2 emissions embodied in Chinese exports has slowed or reversed, while the emissions embodied in exports from less-developed regions such as Vietnam and Bangladesh have surged. Although China’s emissions may be peaking, ever more complex supply chains are distributing energy-intensive industries and their CO2 emissions throughout the global South. This trend may seriously undermine international efforts to reduce global emissions that increasingly rely on rallying voluntary contributions of more, smaller, and less-developed nations.
Silicon-chip-based mid-infrared dual-comb spectroscopy
Authors: Yu Mengjie , Okawachi Yoshitomo , Griffith Austin G. , Picqué Nathalie , Lipson Michal , Gaeta Alexander L. 
Published: May 2018

AbstractThe development of a spectroscopy device on a chip that could realize real-time fingerprinting with label-free and high-throughput detection of trace molecules represents one of the big challenges in sensing. Dual-comb spectroscopy (DCS) in the mid-infrared is a powerful technique offering high acquisition rates and signal-to-noise ratios through use of only a single detector with no moving parts. Here, we present a nanophotonic silicon-on-insulator platform designed for mid-infrared (mid-IR) DCS. A single continuous-wave low-power pump source generates two mutually coherent mode-locked frequency combs spanning from 2.6 to 4.1 μm in two silicon microresonators. A proof-of-principle experiment of vibrational absorption DCS in the liquid phase is achieved acquiring spectra of acetone spanning from 2900 to 3100 nm at 127-GHz (4.2-cm−1) resolution. These results represent a significant step towards a broadband, mid-IR spectroscopy instrument on a chip for liquid/condensed matter phase studies.
Olfactory bulb acetylcholine release dishabituates odor responses and reinstates odor investigation
Authors: Ogg M. Cameron , Ross Jordan M. , Bendahmane Mounir , Fletcher Max L. 
Published: May 2018

AbstractHabituation and dishabituation modulate the neural resources and behavioral significance allocated to incoming stimuli across the sensory systems. We characterize these processes in the mouse olfactory bulb (OB) and uncover a role for OB acetylcholine (ACh) in physiological and behavioral olfactory dishabituation. We use calcium imaging in both awake and anesthetized mice to determine the time course and magnitude of OB glomerular habituation during a prolonged odor presentation. In addition, we develop a novel behavioral investigation paradigm to determine how prolonged odor input affects odor salience. We find that manipulating OB ACh release during prolonged odor presentations using electrical or optogenetic stimulation rapidly modulates habituated glomerular odor responses and odor salience, causing mice to suddenly investigate a previously ignored odor. To demonstrate the ethological validity of this effect, we show that changing the visual context can lead to dishabituation of odor investigation behavior, which is blocked by cholinergic antagonists in the OB.
Low energy cost for cultured pearl formation in grafted chimeric Pinctada margaritifera
Authors: Le Moullac Gilles , Soyez Claude , Ky Chin-Long 
Published: May 2018

AbstractThe pearl oyster is one of the rare animal models that support two distinct genomes, through the surgical graft process operated for culture pearl production. This grafted organism is assimilated to a chimera whose physiological functioning remains poorly known. The question of the energy expenditure comparison between chimera and non-chimera animals arises. To answer this question, grafted and non-grafted pearl oysters were evaluated for their energetic needs by the indirect calorimetry method. This method made it possible to measure the energy expenditure based on the respiration rate (RR) measurement, reflecting the basal metabolism. The results showed that the RR values for grafted and non-grafted pearl oysters were not significantly different (p < 0.05). The estimated cost of pearl calcification including CaCO3 and proteins synthesis was 0.237 ± 0.064 J h−1, representing 0.64% of the total energy expenditure of grafted pearl oysters. This study made it possible, for the first time, to see the energy cost of cultured pearl formation in P. margaritifera and the little impact in the energetic metabolism of the chimera organism.
Simultaneous Amelioratation of Colitis and Liver Injury in Mice by Bifidobacterium longum LC67 and Lactobacillus plantarum LC27
Authors: Jang Se-Eun , Jeong Jin-Ju , Kim Jeon-Kyung , Han Myung Joo , Kim Dong-Hyun 
Published: May 2018

AbstractDisturbances in the gut microbiota composition are associated with chronic inflammatory diseases of the intestine and the liver. In a preliminary study, Lactobacillus plantarum LC27 and Bifidobacterium longum LC67 could inhibit Escherichia coli growth and lipopolysaccharide-induced NF-κB activation linked to gut inflammation. Here, we investigated their effects on 2,4,6-trinitrobenzesulfonic acid (TNBS)-induced colitis and liver damage in mice. First, oral administration of LC27 or LC67 (1 × 109 CFU/mouse) inhibited TNBS-induced colon shortening [F(5,30) = 100.66, P < 0.05] and myeloperoxidase activity [F(5,30) = 56.48, P < 0.05]. These probiotics restored TNBS-induced disturbance of gut microbiota, leading to the suppression of Proteobacteria to Bacteroidetes ratio and fecal and blood lipopolysaccharide levels. Second, LC27 and LC67 inhibited TNBS-induced NF-κB activation, reversed TNBS-suppressed tight junction protein expression, and restored Th17/Treg balance. Also, treatment with LC27 or LC67 significantly decreased TNBS-induced alanine transaminase [ALT, F(5,30) = 3.50, P < 0.05] and aspartate transaminase [AST, F(5,30) = 12.81, P < 0.05] levels in the blood, as well as t-butylhydroperoxide-induced ALT and AST levels. Finally, the mixture of LC27 and LC67 (0.5 × 109 CFU/mouse, respectively) synergistically attenuated TNBS- or t-butylhydroperoxide-induced colitis and liver damage. The capability of LC27 and LC67 to reverse TNBS-mediated microbiota shift and damage signals suggests that these probiotics may synergistically attenuate colitis and liver injury by alleviating gut microbiota imbalance.
Tuning of the Hanle effect from EIT to EIA using spatially separated probe and control beams
Authors: Bhattarai Mangesh , Bharti Vineet , Natarajan Vasant 
Published: May 2018

AbstractWe demonstrate a technique for continuous tuning of the Hanle effect from electromagnetically induced transparency (EIT) to electromagnetically induced absorption (EIA) by changing the polarization ellipticity of a control beam. In contrast to previous work in this field, we use spatially separated probe and control beams. The experiments are done using magnetic sublevels of the Fg = 4 → Fe = 5 closed hyperfine transition in the 852 nm D2 line of 133Cs. The atoms are contained in a room temperature vapor cell with anti-relaxation (paraffin) coating on the walls. The paraffin coating is necessary for the atomic coherence to be transported between the beams. The experimental results are supported by a density-matrix analysis of the system, which also explains the observed amplitude and zero-crossing of the resonances. Such continuous tuning of the sign of a resonance has important applications in quantum memory and other precision measurements.
Urban sparrows respond to a sexually selected trait with increased aggression in noise
Authors: Phillips Jennifer N. , Derryberry Elizabeth P. 
Published: May 2018

AbstractAnimals modify acoustic communication signals in response to noise pollution, but consequences of these modifications are unknown. Vocalizations that transmit best in noise may not be those that best signal male quality, leading to potential conflict between selection pressures. For example, slow paced, narrow bandwidth songs transmit better in noise but are less effective in mate choice and competition than fast paced, wide bandwidth songs. We test the hypothesis that noise affects response to song pace and bandwidth in the context of competition using white-crowned sparrows (Zonotrichia leucophrys). We measure male response to song variation along a gradient of ambient noise levels in San Francisco, CA. We find that males discriminate between wide and narrow bandwidth songs but not between slow and fast paced songs. These findings are biologically relevant because songs in noisy areas tend to have narrow bandwidths. Therefore, this song phenotype potentially increases transmission distance in noise, but elicits weaker responses from competitors. Further, we find that males respond more strongly to stimuli in noisier conditions, supporting the ‘urban anger’ hypothesis. We suggest that noise affects male responsiveness to song, possibly leading to more territorial conflict in urban areas.
Computed tomography for evaluating right ventricle and pulmonary artery in pediatric tetralogy of Fallot: correlation with post-operative pulmonary regurgitation
Authors: Gao Yue , Yang Zhi-gang , Shi Ke , Diao Kai-yue , Xu Hua-yan , Guo Ying-kun 
Published: May 2018

AbstractPulmonary regurgitation (PR) is the most common complication after tetralogy of Fallot (TOF) surgical repair, and long-term PR might result in cardiovascular events. The aim of this study was to assess the influence of pre-operative right ventricle (RV) and pulmonary artery (PA) parameters assessed by dual-source computed tomography on post-operative PR. A total of 41 TOF patients who underwent trans-valve surgical repair were retrospectively recruited. The RV and PA parameters evaluated by pre-operative DSCT were compared between the PR and non-PR groups. Our result revealed that the PA parameters (McGoon ratio, Nakata index, and LPA diameter) and RV parameters (RV length diameter and RV short diameter) all showed significant differences between the two groups (all p < 0.05). There was a significant correlation between PR and LPA diameter (r = 0.361), McGoon ratio (r = 0.413), and Nakata index (r = 0.482). Receiver operating characteristic analysis also revealed a moderate sensitivity and specificity of LPA (66.33%; 82.60%), McGoon ratio (83.33%, 56.52%), and Nakata index (83.33%; 60.87%) for predicting the occurrence of PR. This study indicated that these pre-operative indices calculated by DSCT are associated with post-operative PR and that these pre-operative PA and RV parameters may serve as novel predictors of the risk of PR.
Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions
Authors: Silvas Tania V. , Hou Shurong , Myint Wazo , Nalivaika Ellen , Somasundaran Mohan , Kelch Brian A. , Matsuo Hiroshi , Kurt Yilmaz Nese , Schiffer Celia A. 
Published: May 2018

AbstractThe APOBEC3 (A3) family of human cytidine deaminases is renowned for providing a first line of defense against many exogenous and endogenous retroviruses. However, the ability of these proteins to deaminate deoxycytidines in ssDNA makes A3s a double-edged sword. When overexpressed, A3s can mutate endogenous genomic DNA resulting in a variety of cancers. Although the sequence context for mutating DNA varies among A3s, the mechanism for substrate sequence specificity is not well understood. To characterize substrate specificity of A3A, a systematic approach was used to quantify the affinity for substrate as a function of sequence context, length, secondary structure, and solution pH. We identified the A3A ssDNA binding motif as (T/C)TC(A/G), which correlated with enzymatic activity. We also validated that A3A binds RNA in a sequence specific manner. A3A bound tighter to substrate binding motif within a hairpin loop compared to linear oligonucleotide, suggesting A3A affinity is modulated by substrate structure. Based on these findings and previously published A3A–ssDNA co-crystal structures, we propose a new model with intra-DNA interactions for the molecular mechanism underlying A3A sequence preference. Overall, the sequence and structural preferences identified for A3A leads to a new paradigm for identifying A3A’s involvement in mutation of endogenous or exogenous DNA.
Comparison of intensity, phase retardation, and local birefringence images for filtering blebs using polarization-sensitive optical coherence tomography
Authors: Fukuda Shinichi , Fujita Akari , Kasaragod Deepa , Beheregaray Simone , Ueno Yuta , Yasuno Yoshiaki , Oshika Tetsuro 
Published: May 2018

AbstractPolarization-sensitive optical coherence tomography (PS-OCT) allows the recording of depth-resolved polarimetric measurements. It has been reported that phase retardation and local birefringence images can noninvasively detect fibrotic area in blebs after glaucoma surgery. Evaluation of scar fibrosis in blebs is important not only for predicting bleb function, but also for planning revision trabeculectomy. Herein, we characterize the intensity, phase retardation, and local birefringence images of blebs using PS-OCT. A total of 85 blebs from 85 patients who had undergone trabeculectomy were examined. Both phase retardation and local birefringence images detected fibrotic changes in blebs after glaucoma surgery. Phase retardation images detected slight fibrotic change during the early stage after surgery, whereas local birefringence images showed localized fibrotic tissue. There are two main patterns of local birefringence image changes in blebs: plate-like birefringence changes and diffuse changes. The area of plate-like birefringence change was significantly larger in poorly functioning blebs and is thus correlated with bleb function. These data suggest that the plate-like fibrotic change evaluation by PS-OCT may be useful not only for noninvasive evaluation of fibrotic scar tissue in blebs, but also for developing strategies for revision trabeculectomy.
Immunoprofiling of Chlamydia trachomatis using whole-proteome microarrays generated by on-chip in situ expression
Authors: Hufnagel Katrin , Lueong Smiths , Willhauck-Fleckenstein Martina , Hotz-Wagenblatt Agnes , Miao Beiping , Bauer Andrea , Michel Angelika , Butt Julia , Pawlita Michael , Hoheisel Jörg D. , Waterboer Tim 
Published: May 2018

AbstractUsing Chlamydia trachomatis (Ct) as a complex model organism, we describe a method to generate bacterial whole-proteome microarrays using cell-free, on-chip protein expression. Expression constructs were generated by two successive PCRs directly from bacterial genomic DNA. Bacterial proteins expressed on microarrays display antigenic epitopes, thereby providing an efficient method for immunoprofiling of patients and allowing de novo identification of disease-related serum antibodies. Through comparison of antibody reactivity patterns, we newly identified antigens recognized by known Ct-seropositive samples, and antigens reacting only with samples from cervical cancer (CxCa) patients. Large-scale validation experiments using high-throughput suspension bead array serology confirmed their significance as markers for either general Ct infection or CxCa, supporting an association of Ct infection with CxCa. In conclusion, we introduce a method for generation of fast and efficient proteome immunoassays which can be easily adapted for other microorganisms in all areas of infection research.
Habitual coffee consumption and cognitive function: a Mendelian randomization meta-analysis in up to 415,530 participants
Authors: Zhou Ang , Taylor Amy E. , Karhunen Ville , Zhan Yiqiang , Rovio Suvi P. , Lahti Jari , Sjögren Per , Byberg Liisa , Lyall Donald M. , Auvinen Juha , Lehtimäki Terho , Kähönen Mika , Hutri-Kähönen Nina , Perälä Mia Maria , Michaëlsson Karl , Mahajan Anubha , Lind Lars , Power Chris , Eriksson Johan G. , Raitakari Olli T. , Hägg Sara , Pedersen Nancy L. , Veijola Juha , Järvelin Marjo-Riitta , Munafò Marcus R. , Ingelsson Erik , Llewellyn David J. , Hyppönen Elina 
Published: May 2018

AbstractCoffee’s long-term effect on cognitive function remains unclear with studies suggesting both benefits and adverse effects. We used Mendelian randomization to investigate the causal relationship between habitual coffee consumption and cognitive function in mid- to later life. This included up to 415,530 participants and 300,760 coffee drinkers from 10 meta-analysed European ancestry cohorts. In each cohort, composite cognitive scores that capture global cognition and memory were computed using available tests. A genetic score derived using CYP1A1/2 (rs2472297) and AHR (rs6968865) was chosen as a proxy for habitual coffee consumption. Null associations were observed when examining the associations of the genetic score with global and memory cognition (β = −0.0007, 95% C.I. −0.009 to 0.008, P = 0.87; β = −0.001, 95% C.I. −0.005 to 0.002, P = 0.51, respectively), with high consistency between studies (Pheterogeneity > 0.4 for both). Domain specific analyses using available cognitive measures in the UK Biobank also did not support effects by habitual coffee intake for reaction time, pairs matching, reasoning or prospective memory (P ≥ 0.05 for all). Despite the power to detect very small effects, our meta-analysis provided no evidence for causal long-term effects of habitual coffee consumption on global cognition or memory.
Structure and crystallography of foliated and chalk shell microstructures of the oyster Magallana: the same materials grown under different conditions
Authors: Checa Antonio G. , Harper Elizabeth M. , González-Segura Alicia 
Published: May 2018

AbstractOyster shells are mainly composed of layers of foliated microstructure and lenses of chalk, a highly porous, apparently poorly organized and mechanically weak material. We performed a structural and crystallographic study of both materials, paying attention to the transitions between them. The morphology and crystallography of the laths comprising both microstructures are similar. The main differences were, in general, crystallographic orientation and texture. Whereas the foliated microstructure has a moderate sheet texture, with a defined 001 maximum, the chalk has a much weaker sheet texture, with a defined 011 maximum. This is striking because of the much more disorganized aspect of the chalk. We hypothesize that part of the unanticipated order is inherited from the foliated microstructure by means of, possibly,$${\boldsymbol{\{}}{\bf{01}}\bar{{\bf{1}}}{\bf{8}}{\boldsymbol{\}}}$${011¯8}twinning. Growth line distribution suggests that during chalk formation, the mantle separates from the previous shell several times faster than for the foliated material. A shortage of structural material causes the chalk to become highly porous and allows crystals to reorient at a high angle to the mantle surface, with which they continue to keep contact. In conclusion, both materials are structurally similar and the differences in orientation and aspect simply result from differences in growth conditions.
A paradox of epidemics between the state and parameter spaces
Authors: Liu Hengcong , Zheng Muhua , Liu Zonghua 
Published: May 2018

AbstractIt is recently revealed from amounts of real data of recurrent epidemics that there is a phenomenon of hysteresis loop in the state space. To understand it, an indirect investigation from the parameter space has been given to qualitatively explain its mechanism but a more convincing study to quantitatively explain the phenomenon directly from the state space is still missing. We here study this phenomenon directly from the state space and find that there is a positive correlation between the size of outbreak and the size of hysteresis loop, implying that the hysteresis is a nature feature of epidemic outbreak in real case. Moreover, we surprisingly find a paradox on the dependence of the size of hysteresis loop on the two parameters of the infectious rate increment and the transient time, i.e. contradictory behaviors between the two spaces, when the evolutionary time of epidemics is long enough. That is, with the increase of the infectious rate increment, the size of hysteresis loop will decrease in the state space but increase in the parameter space. While with the increase of the transient time, the size of hysteresis loop will increase in the state space but decrease in the parameter space. Furthermore, we find that this paradox will disappear when the evolutionary time of epidemics is limited in a fixed period. Some theoretical analysis are presented to both the paradox and other numerical results.