bluuebunny/crossref_metadata_2025_split huggingface dataset:
Machine-learning-aided biochar production from aquatic biomass
Authors: Yuan Zhilong , Wang Ye , Zhu Lingfeng , Zhang Congcong , Sun Yifei 
Published: November 2024

AbstractModeling hydrothermal carbonization (HTC) and pyrolysis carbonization (PLC) for the conversion of biomass into high-quality biochar for various applications shows promise. Unlike the extensive modeling studies on lignocellulosic biomass, research on aquatic biomass (AB) had not been reported until now. In this study, we compiled 586 data points from existing literature and trained five tree-based models to predict the yields of hydrochar and pyrochar and their properties, including nitrogen recovery degree, energy density, energy recovery degree, and residual sulfur degree, based on 10 feedstock and process parameters. The random forest regression (RFR) model demonstrated the highest predictive accuracy among these models. It achieved R2 values ranging from 0.89 to 0.98 for hydrochar yield, nitrogen recovery degree of hydrochar, energy recovery degree of hydrochar, and residual sulfur degree of hydrochar. The extreme gradient boosting (XGB) model also showed exemplary performance, with R2 values between 0.84 and 0.94 for energy density of hydrochar, pyrochar yield, and nitrogen recovery degree of pyrochar. Results on feature importance highlighted that, beyond the well-documented impact of process parameters, the properties of biochar were significantly influenced by the elemental compositions, such as nitrogen and sulfur contents of the feedstock. The relationship between these factors was further elucidated using partial dependence plots. Finally, we used RFR model for hydrochar yield and XGB model for pyrochar yield as examples, to test generalization ability of developed models with new data, further explaining their application methods. Overall, this study provided valuable insights into predicting and understanding the HTC and PLC processes of AB to produce high-quality biochar for various applications using low resources and time costs. Besides, we presented an iterative learning application method where the developed models demonstrated exceptionally high performance with new data. This method is highly versatile and can be adopted across various directions in the field of machine learning.
Graphical Abstract
Evaluation of interventions led by pharmacists in antimicrobial stewardship programs in low- and middle-income countries: a systematic literature review
Authors: Marins Tatiana Aporta , de Jesus Graciele Riveres , Holubar Marisa , Salinas Jorge L. , Guglielmi Gabrielli Pare , Lin Vivian , de Almeida Silvana Maria 
Published: November 2024

Abstract

Objective:
We performed a systematic literature review to identify and describe pharmacist-led antimicrobial stewardship programs (ASPs) interventions in low- and middle-income countries (LMICs).

Design:
Systematic literature review.

Methods:
We searched PubMed for studies evaluating pharmacist-led ASP interventions in LMICs from January 1, 2012, to November 4, 2023. We evaluated the article’s country of origin, described ASP interventions, and analyzed their reported outcomes.

Results:
Twenty-four studies were included; ten were conducted in China, two in India, two in Thailand, five in Africa, three in Latin America, and two in the Middle East. The predominant interventions in the studies were education and training followed by audit and feedback. The outcomes reported included reduction in antimicrobial consumption, cost reduction, shortening of the duration of antimicrobial therapy, and de-escalation.

Conclusions:
Our findings reinforce the importance of clinical pharmacists leading interventions related to antimicrobial stewardship in LMCIs and the global importance of investing in Infectious Disease training.
“Do they REALLY trust us”?: Lessons from a volunteer research registry
Authors: Sotto-Santiago Sylk , Wiehe Sarah , Hudson Brenda , Slaven James , Vinaixa Conor , Bruns Rebecca , Claxton Gina , Delp Lynsey , Lynch Dustin , Moe Sharon 
Published: November 2024

Abstract

Background:
All IN for Health is a well-established community-academic partnership dedicated to helping improve the lives of Indiana residents by increasing health research literacy and promoting health resources, as well as opportunities to participate in research. It is sponsored by the Indiana Clinical and Translational Science Institute (I-CTSI). The study’s purpose was to measure trust in biomedical research and healthcare organizations among research volunteers.

Methods:
The Relationship of Trust and Research Engagement (RTRE) survey was developed utilizing 3 validated scales. The RTRE consisted of 36 items in a 5-point Likert scale with three open-text questions. We conducted 3 focus groups with a total of 24 individuals ahead of the survey’s launch. Recruitment was done through the All IN for Health newsletter. The survey was administered in the summer of 2022.

Results:
Six hundred and sixty-three individuals participated in the survey. Forty-one percent agreed that doctors do medical research for selfish reasons. Moreover, 50% disagree that patients get the same medical treatment regardless of race/ethnicity. Sixty-seven percent think it is safe to participate in medical research, yet 79% had never been asked to participate. Ten percent believe that researchers select minorities for their most dangerous studies and expose minoritized groups to diseases.

Conclusion:
The utilization of tools to measure trust will facilitate participant recruitment and will assist institutions and investigators alike in accountability. It is imperative, we work toward understanding our communities’ trust in medical research, assessing our own trustworthiness, and critically reflect on the authenticity of our efforts.
COVID-19 Pandemic Preparedness and Response in Latin American Countries: Scoping Review and Analysis Based on World Health Organization Standards
Authors: Ramírez Berrío Lilian Sofía , Vanegas Duarte Esteban Orlando , Velásquez Morales Alejandra , Niño Cruz Gloria Isabel , Salas Zapata Leonardo , Ramírez Varela Andrea 
Published: November 2024

Abstract

Objective
To describe COVID-19 pandemic preparedness and response in 6 countries during 2020 and 2021.

Methods
A literature search was conducted in MEDLINE, Web of Science, Epistemonikos, LILACS, and Google Scholar regarding the measures adopted to face the COVID-19 pandemic; the checklist of the international World Healths Organization’s (WHO) guide “COVID-19 Strategic Preparedness and Response Plan” was applied.

Results
Most countries coordinated their response at the central level with the establishment of management teams and the activation of emergency operations centers for the coordination of the response to the pandemic. The capacity to perform epidemiological surveillance activities such as early case detection, contact tracing, and real-time monitoring of data was exceeded. There was low capacity in laboratory infrastructure, specialized human talent, and deployment of molecular testing for SARS-CoV-2 detection.

Conclusions
This is the first review that addresses the importance of documenting how well-prepared countries in the region were to face a pandemic such as COVID-19 taking into account WHO standards and guidelines. In Latin America, the literature showed reports of heterogeneous responses to the pandemic, a gap in the literature on laboratory and diagnostic pillar activities, and a lack of literature reporting on epidemiological surveillance pillar activities in Argentina, Chile, and Ecuador.
Pagers Explosion: Challenges of the Emergency Preparedness Plan
Authors: Kalaji Joelle , Nakhle Ramzi , Weinstein Eric S , Helou Mariana Charbel , Jabbour Elsy 
Published: November 2024

Abstract
On September 17, 2024, an unforeseen attack due to the Pagers Explosion targeting a military party in Lebanon left more than 2750 casualties. A total of 38 injured patients presented to the Lebanese American University Medical Center-Rizk Hospital (LAUMC-RH), a private university hospital. Most injuries were amputated fingers and eye injuries. Intensive training and regular drills are conducted at the hospital level to ensure readiness. This report highlights major challenges that were encountered during this explosion and provides possible strategies to overcome them.
Millets, dogs, pigs and permanent settlement: productivity transitions in Neolithic northern China
Authors: Stevens Chris J. , Zhuang Yijie , Fuller Dorian Q. 
Published: November 2024

Abstract
The transition to sedentary agricultural societies in northern China fuelled considerable demographic growth from 5000 to 2000 BC. In this article, we draw together archaeobotanical, zooarchaeological and bioarchaeological data and explore the relationship between several aspects of this transition, with an emphasis on the millet-farming productivity during the Yangshao period and how it facilitated changes in animal husbandry and consolidation of sedentism. We place the period of domestication (the evolution of non-shattering, initial grain size increase and panicle development) between 8300 and 4300 BC. The domestication and post-domestication of foxtail (Setaria italica) and broomcorn (Panicum miliaceum) millet increased their productivity substantially, with much greater rate of change than for rice (Oryza sativa). However, millets are significantly less productive per hectare than wet rice farming, a point reflected in the greater geographical expanse of northern Neolithic millet cultures (5000–3000 BC) in comparison with their Yangtze rice-growing counterparts. The domestication of pigs in the Yellow River region is evidenced by changes in their morphology after 6000 BC, and a transition to a millet-based diet c. 4500–3500 BC. Genetic data and isotopic data from dogs indicate a similar dietary transition from 6000 to 4000 BC, leading to new starch-consuming dog breeds. Significant population increase associated with agricultural transitions arose predominately from the improvement of these crops and animals following domestication, leading to the formation of the first proto-urban centres and the demic-diffusion of millet agriculture beyond central northern China between 4300–2000 BC.
280 Characters of Contention: Analyzing Partisan Behavior on Twitter During Supreme Court Confirmation Processes
Authors: Sorenson Maron W. , Houston Rachael , Savage Amanda 
Published: November 2024

Abstract
We analyze a cache of tweets from partisan users concerning the confirmation hearings of Justices Brett Kavanaugh, Amy Coney Barrett, and Ketanji Brown Jackson. Using these original data, we investigate how Twitter users with partisan leanings interact with judicial nominations and confirmations. We find that these users tend to exhibit behavior consistent with offline partisan dynamics. Our analysis reveals that Democrats and Republicans express distinct emotional responses based on the alignment of nominees with their respective parties. Additionally, our study highlights the active participation of partisans in promoting politically charged topics throughout the confirmation process, starting from the vacancy stage.
The protective effect of higher serum triacylglycerol (51:4) levels against Parkinson’s disease
Authors: Jing Yajun , Su Jinye , Zhu Honglin , Chen Yiming , Shukla Surmai , Yu Lianghong , Kang Dezhi , Wang Dengliang 
Published: November 2024

Abstract
Emerging evidence has shown a strong correlation between serum triacylglycerol (TAG) levels, the inflammatory response, and Parkinson’s disease (PD) onset. However, the causal relationship between TAG levels and PD has not been well-established. We aimed to investigate the relationship between serum TAG levels and risk of PD and explore the potential mediating role of circulating immune cells and inflammatory proteins. We utilised genotype data from the GeneRISK cohort, and summary data from genome wide association studies investigating PD, circulating immune cells, inflammatory proteins, and plasma lipidomes. Using Mendelian randomization (MR) and multivariate MR (MVMR) analysis, we further adjusted for phosphatidylcholine (17:0_18:1) and triacylglycerol (58:7). Our results suggested a robust causal link between higher serum TAG (51:4) levels and a decreased risk of PD, with one standard deviation genetically instrumented higher serum TAG (51:4) level leading to a 21 percent [95% CI, 0.66 – 0.96] reduction in the risk of PD (p = 0.015). Additionally, the results of the mediation analysis suggested a possible role for mediation through circulating immune cells (including IgD-CD38-B cells and resting CD4 regulatory T cells), but not circulating inflammatory proteins, in the causal relationship between the plasma lipidomes and PD. Our study confirms a causal relationship between higher serum TAG (51:4) levels and a lower risk of PD and clarifies a possible role for mediation through circulating immune cells, but not inflammatory proteins. These findings indicate that serum triacylglycerol (51:4) regulates immunity to effectively lower the risk of PD.
Probiotics’ supplementation alleviates disease severity and improves postural balance by repairing intestinal leak in patients suffering from osteoarthritis: a double-blinded clinical trial
Authors: Karim Asima , Khan Haroon Ahmed , Iqbal M. Shahid , Ahmad Firdos , Qaisar Rizwan 
Published: November 2024

AbstractIncreased intestinal leakiness and associated systemic inflammation are potential contributors to osteoarthritis (OA) and postural imbalance in the geriatric population. To date, no successful treatment to correct postural imbalance in OA is known. We aimed to explore the effects of a multistrain probiotic upon postural imbalance in OA-affected patients. In this randomised, double-blind trial with a placebo group, 147 patients suffering from knee OA (age span = 64–75 years) were divided into placebo (n 75) and probiotics (n 72) study groups. Vivomix 112 billion, multistrain probiotic was given once a day for 12 weeks. The outcomes of study variables were determined first at baseline and later after 12 weeks of intervention. These were Western Ontario and McMaster Universities Osteoarthritis Index (WOMAC), knee flexion range of motion (ROM), pain intensity by visual analogue scale, handgrip strength (HGS), gait speed and balance control assessed in standing, semi-tandem and tandem stances. We determined plasma zonulin to determine intestinal leak along with c-reactive protein and 8-isoprostanes levels. A total of 136 OA patients taking placebo (n 71) and probiotics (n 65) were analysed. The probiotics group exhibited a reduction in pain intensity, disease severity and WOMAC scores along with improvement in balance scores, HGS and walking speed (P < 0·05 for all), no change in ROM, resting pain and 8-isoprostanes levels. The correlation analysis revealed a robust association of balance scores with plasma markers of intestinal leakiness and inflammation in probiotics but not in the placebo group. Probiotics reduce postural imbalance in OA patients partly due to a reduction in intestinal leakiness.
Coffee consumption with different additives and types, genetic variation in caffeine metabolism and new-onset acute kidney injury
Authors: Ye Ziliang , Liu Mengyi , Yang Sisi , Zhang Yanjun , Zhang Yuanyuan , He Panpan , Zhou Chun , Gan Xiaoqin , Xiang Hao , Huang Yu , Hou Fan Fan , Qin Xianhui 
Published: November 2024

AbstractWe aimed to evaluate the association of coffee consumption with different additives, including milk and/or sweetener (sugar and/or artificial sweetener), and different coffee types, with new-onset acute kidney injury (AKI), and examine the modifying effects of genetic variation in caffeine metabolism. 194 324 participants without AKI at baseline in the UK Biobank were included. The study outcome was new-onset AKI. During a median follow-up of 11·6 years, 5864 participants developed new-onset AKI. Compared with coffee non-consumers, a significantly lower risk of new-onset AKI was found in coffee consumers adding neither milk nor sugar to coffee (hazard ratio (HR), 0·86; 95 % CI, 0·78, 0·94) and adding only milk to coffee (HR,0·83; 95 % CI, 0·78, 0·89), but not in coffee consumers adding only sweetener (HR,1·14; 95 % CI, 0·99, 1·31) and both milk and sweetener to coffee (HR,0·96; 95 % CI, 0·89, 1·03). Moreover, there was a U-shaped association of coffee consumption with new-onset AKI, with the lowest risk at 2–3 drinks/d, in unsweetened coffee (no additives or milk only to coffee), but no association was found in sweetened coffee (sweetener only or both milk and sweetener to coffee). Genetic variation in caffeine metabolism did not significantly modify the association. A similar U-shaped association was found for instant, ground and decaffeinated coffee consumption in unsweetened coffee consumers, but not in sweetened coffee consumers. In conclusion, moderate consumption (2–3 drinks/d) of unsweetened coffee with or without milk was associated with a lower risk of new-onset AKI, irrespective of coffee type and genetic variation in caffeine metabolism.
Methodological advances in gastrointestinal tract physiology measurements: relevance to nutritional studies
Authors: Biesiekierski Jessica R. , Yao Chu K. , Tuck Caroline J. , Snelson Matthew 
Published: November 2024

Abstract
The gastrointestinal (GI) tract plays a critical role in nutrition and the pathophysiology of disease, and there is an increasing variety of methodologies available for the assessment of various aspects of GI physiology. Advancements in assessment methods, including techniques to study gut motility, fermentation, permeability, and microbiota composition, have provided researchers with powerful tools to investigate the impact of diet on GI tract physiology and the microbiota-gut-brain axis. Mechanistic evidence from reverse translational studies, which apply findings from human studies to preclinical models in a ‘bedside-to-bench’ approach, have also enhanced our understanding of the bidirectional interactions and candidate signalling molecules among the diet-gut-brain relationship. Interpreting data from these advanced techniques and study designs requires a thorough understanding of their principles, applications, and limitations. This review aims to summarise the methodological advances in GI tract physiology measurements and their application in nutritional studies, focusing on gut motility, fermentation, and permeability. We will present examples of how these techniques have been utilised in recent research, discuss their advantages and limitations, and provide insights on their use and interpretation in research. Understanding the capabilities and limitations of these tools is crucial for designing robust studies and elucidating the complex interplay between diet and the GI tract. The scope of this review encompasses recent advancements in GI tract assessment methodologies and their implications for nutritional research, providing a comprehensive overview for researchers in the field.
Unravelling the diversity of Posthodiplostomum Dubois, 1936 (Trematoda: Diplostomidae) in fish-eating birds from the Neotropical region of Mexico, with the description of a new species
Authors: González-García Marcelo Tonatiuh , López-Jiménez Alejandra , Ortega-Olivares Mirza Patricia , Sereno-Uribe Ana Lucia , Pérez-Ponce de León Gerardo , García-Varela Martín 
Published: November 2024

Abstract
Adults of the genus Posthodiplostomum, Dubois, 1936 are parasites of fish-eating birds, mainly of the family Ardeidae, and are globally distributed. The genus currently comprises 35 species, although recent molecular evidence has shown that the diversity of the genus is underestimated since several candidate species have been recognized. In the Neotropical region of Mexico, at least 6 Posthodiplostomum lineages have been detected with metacercaria stages recovered from unrelated fish hosts. Here, we obtained adult specimens of Posthodiplostomum from 6 fish-eating birds representing 2 families (Butorides virescens, Ardea herodias, Nycticorax nycticorax, Tigrisoma mexicanum – Ardeidae, and Rynchops niger and Leucophaeus atricilla – Lariidae) from 4 localities in southern Mexico. Specimens were sequenced for 2 nuclear (28S and ITS1–5.8S–ITS2) and 1 mitochondrial (cox1) molecular marker. Phylogenetic analyses allowed us to link metacercariae and adult specimens and recognized a lineage, which was described morphologically. The new species can be distinguished from its congeners by its prosoma morphology and body size; this is the first described species in the Neotropical region of Mexico. Additionally, new host and locality records for P. macrocotyle and P. pricei are presented, expanding their geographical distribution range in the Americas.
Migratory birds have a distinct haemosporidian community and are temporally decoupled from vector abundance at a stopover site
Authors: Galen Spencer C. , Ostrow Emily , Ray Suravi , Henry Marissa , Dispoto Janice , Fetterman Alison , Kiziuk Lisa , Weckstein Jason D. 
Published: November 2024

Abstract
Migratory animals likely play an important role in the geographic spread of parasites. In fact, a common assumption is that parasites are potentially transmitted by migratory animals at temporary stopover sites along migratory routes, yet very few studies have assessed whether transmission at stopover sites can or does occur. We investigated the potential for a group of vector-transmitted parasites, the avian haemosporidians, to be transmitted during migratory stopover periods at Rushton Woods Preserve in Pennsylvania, USA. Using an analysis of 1454 sampled avian hosts, we found that while a core group of abundant haemosporidians was shared between local breeding birds and passing migrants, the parasite community of migratory birds at Rushton was distinct from that of local breeding birds and showed similarity to a previously sampled boreal forest haemosporidian community. Haemosporidians that were unique to passing migratory birds were associated with sampling sites in North America with cooler summer temperatures than haemosporidians that are transmitted at Rushton, suggesting that the transmission of these parasites may be restricted to high-latitude regions outside of our temperate stopover site. We also found that the abundance of mosquitoes in our study region is offset from that of migratory bird abundance during avian migratory periods, with the peak period of bird migration occurring during periods of low mosquito activity. Collectively, these findings suggest that although abundant haemosporidians are possibly transmitted between local and passing migratory birds, a combination of biotic and abiotic factors may constrain haemosporidian transmission during avian stopover at our study site.