bluuebunny/crossref_metadata_2025_split huggingface dataset:
A gene expression signature in developing Purkinje cells predicts autism and intellectual disability co-morbidity status
Authors: Clifford Harry , Dulneva Anna , Ponting Chris P. , Haerty Wilfried , Becker Esther B. E. 
Published: January 2019

AbstractAutism spectrum disorder (ASD) is a complex neurodevelopmental disease whose underpinning molecular mechanisms and neural substrates are subject to intense scrutiny. Interestingly, the cerebellum has emerged as one of the key brain regions affected in ASD. However, the genetic and molecular mechanisms that link the cerebellum to ASD, particularly during development, remain poorly understood. To gain insight into the genetic and molecular mechanisms that might link the cerebellum to ASD, we analysed the transcriptome dynamics of a developing cell population highly enriched for Purkinje cells of the mouse cerebellum across multiple timepoints. We identified a single cluster of genes whose expression is positively correlated with development and which is enriched for genes associated with ASD. This ASD-associated gene cluster was specific to developing Purkinje cells and not detected in the mouse neocortex during the same developmental period, in which we identified a distinct temporally regulated ASD gene module. Furthermore, the composition of ASD risk genes within the two distinct clusters was significantly different in their association with intellectual disability (ID), consistent with the existence of genetically and spatiotemporally distinct endophenotypes of ASD. Together, our findings define a specific cluster of ASD genes that is enriched in developing PCs and predicts co-morbidity status.
Subcutaneous Inoculation of Echinococcus multilocularis Induces Delayed Regeneration after Partial Hepatectomy
Authors: Apaer Shadike , Tuxun Tuerhongjiang , Zhang Heng , Aierken Amina , Li Tao , Zhao Jin-Ming , Wen Hao 
Published: January 2019

AbstractAlveolar echinococcosis (AE) is caused by the larval stage of echinococcus multilocularis (E. multilocularis), and hepatectomy is the main modality in hepatic AE patients. Liver regeneration after partial hepatectomy (PHx) in such patients is challenging, and further investigation is needed. Thus far, knowledge regarding the possible impact of E. multilocularis on liver regeneration after PHx is limited. Herein, a subcutaneous infection model of E. multilocularis was developed in C57 BL/6 mice, and after 3 months, PHx was performed. Plasma and liver samples were harvested under inhalational isofluorane (2%) anaesthesia at designated post-PHx time points (0, 24, 48, 96 and 168 h). The parameters included the future remnant liver/body weight ratio (FLR/BW), liver function tests (AST and ALT) and related cytokines (TNF-α, IL-6, Factor V, HMGB1, TGF-β, TSP-1, and TLR4) and proteins (MyD88 and STAT3). To assess the proliferation intensity of hepatocytes, BrdU, Ki67 and PAS staining were carried out in regenerated liver tissue. The FLR/BW in the infected group from 48 h after surgery was lower than that in the control group. The BrdU positive hepatocyte proportions reached their peak at 48 h in the control group and 96 h in the infected group and then gradually decreased. During the first 48 h after surgery, both the AST and ALT levels in the infected group were lower; however, these levels were altered from 96 h after surgery. In the infected group, the concentrations and mRNA expression levels of the pre-inflammatory cytokines TNF-α and IL-6 demonstrated a delayed peak. Moreover, post-operatively, the TGF-β and TSP-1 levels showed high levels in the infected group at each different time-point compared to those in the control group; however, high levels of TGF-β were observed at 96 h in the control group. The MyD88 and STAT3 protein expression levels in the infected group were markedly higher than those in the control group 96 h after surgery. Delayed liver regeneration after PHx was observed in the C57 BL/6 mice with the subcutaneous infection of E. multilocularis in the current study. This phenomenon could be partially explained by the alteration in the pro-inflammatory cytokines in the immunotolerant milieu induced by chronic E. multilocularis infection.
The structure of the nucleoprotein of Influenza D shows that all Orthomyxoviridae nucleoproteins have a similar NPCORE, with or without a NPTAIL for nuclear transport
Authors: Donchet Amélie , Oliva Justine , Labaronne Alice , Tengo Laura , Miloudi Myriam , C.A. Gerard Francine , Mas Caroline , Schoehn Guy , W.H. Ruigrok Rob , Ducatez Mariette , Crépin Thibaut 
Published: January 2019

AbstractThis paper focuses on the nucleoprotein (NP) of the newly identified member of the Orthomyxoviridae family, Influenza D virus. To date several X-ray structures of NP of Influenza A (A/NP) and B (B/NP) viruses and of infectious salmon anemia (ISA/NP) virus have been solved. Here we purified, characterized and solved the X-ray structure of the tetrameric D/NP at 2.4 Å resolution. The crystal structure of its core is similar to NP of other Influenza viruses. However, unlike A/NP and B/NP which possess a flexible amino-terminal tail containing nuclear localization signals (NLS) for their nuclear import, D/NP possesses a carboxy-terminal tail (D/NPTAIL). We show that D/NPTAIL harbors a bipartite NLS and designed C-terminal truncated mutants to demonstrate the role of D/NPTAIL for nuclear transport.
Thermodynamic stability of magnetic states of monovacancy in graphene revealed by ab initio molecular dynamics simulations
Authors: Gao Fei , Gao Shiwu 
Published: January 2019

AbstractThe stability of magnetic states is essential for potential spintronic applications. Here we report on the thermal stability of magnetic states of monovacancy graphene using ab initio molecular dynamics simulations. At room temperature, thermal fluctuations of the graphene lattice induce a rapid magnetic switching between two states with a high and low magnetic moment, indicating that due to the instability of the atomic structure of the vacancy, the associated magnetic moment is thermodynamically unstable. Lowering the temperature can significantly reduce the rate of the switching process and enhance the resident time on the high magnetic state. It stabilizes in the high magnetic state at as low as 30 K. Analyzing the atomic trajectories and the instant electronic structures confirms that these two magnetic states in MD simulations correspond to the magnetic and nonmagnetic states reported in the literatures. Such fluctuations of local magnetic moments are associated with the vertical displacement of the carbon atoms with the unsaturated dangling bond. This study reveals the dynamical correlation between atomic movement and the magnetic switching, and a comprehensive picture of vacancy magnetism in graphene. It has implications in graphene based spintronic devices.
Comparison of regeneration capacity and Agrobacterium-mediated cell transformation efficiency of different cultivars and rootstocks of Vitis spp. via organogenesis
Authors: Sabbadini S. , Capriotti L. , Molesini B. , Pandolfini T. , Navacchi O. , Limera C. , Ricci A. , Mezzetti B. 
Published: January 2019

AbstractThe success of in vitro plant regeneration and the competence of genetic transformation greatly depends on the genotype of the species of interest. In previous work, we developed a method for the efficient Agrobacterium-mediated genetic transformation via organogenesis of V. vinifera cultivar Thompson Seedless, by using meristematic bulk (MB) as starting tissue. In this study, we applied this method for the regeneration and transformation of MBs obtained from the Italian cultivar Ciliegiolo and two of the commonly used Vitis rootstocks, 110 Richter and Kober 5BB, in comparison with Thompson Seedless. The A. tumefaciens strain EHA105, harbouring pK7WG2 binary vector, was used for the transformation trials, which allowed selection through the enhanced-green fluorescent protein (eGFP) and the neomycin phosphotransferase (nptII) gene. Putative transformed tissues and/or shoots were identified by either a screening based on the eGFP expression alone or its use in combination with kanamycin in the medium. MBs obtained from Thompson Seedless showed the highest regeneration and transformation cell competence, which subsequently allowed the recovery of stably transformed plants. Ciliegiolo, 110 Richter, and Kober 5BB, produced actively growing transgenic calli showing eGFP fluorescence, more consistently on selective media, but had no regenerative competence.
HSPA12A targets the cytoplasmic domain and affects the trafficking of the Amyloid Precursor Protein receptor SorLA
Authors: Madsen Peder , Isaksen Toke Jost , Siupka Piotr , Tóth Andrea E. , Nyegaard Mette , Gustafsen Camilla , Nielsen Morten S. 
Published: January 2019

AbstractSorLA and Sortilin are multifunctional receptors involved in endocytosis and intracellular sorting of different and unrelated ligands. SorLA has recently attracted much attention as a novel strong risk gene for Alzheimer’s disease, and much effort is currently being put into understanding the underlying molecular mechanism. Trafficking of SorLA and Sortilin are mediated by interacting with AP-1, AP-2, GGA 1-3 and the retromer complex. Although these cytosolic adaptor proteins all bind to both SorLA and Sortilin, a large fraction of intracellular Sortilin and SorLA are located in different subcellular vesicles. This indicates that unknown specialised adaptor proteins targeting SorLA for trafficking are yet to be discovered. We have identified HSPA12A as a new adaptor protein that, among Vps10p-D receptors, selectively binds to SorLA in an ADP/ATP dependent manner. This is the first described substrate of HSPA12A, and we demonstrate that the binding, which affects both endocytic speed and subcellular localisation of SorLA, is mediated by specific acidic residues in the cytosolic domain of SorLA. The identification of the relatively unknown HSPA12A as a SorLA specific interaction partner could lead to novel insight into the molecular mechanism of SorLA, and re-emphasises the role of heat shock proteins in neurodegenerative diseases.
Comparisons of different indices of low muscle mass in relationship with cardiometabolic disorder
Authors: Kim Ju Young , Oh Sohee , Park Hwa Yeon , Jun Ji Hye , Kim Hwa Jung 
Published: January 2019

AbstractThis study aimed to evaluate the most valid index among various indices of low muscle mass in assessing cardiometabolic risks in a Korean population. Appendicular lean mass index (ALMI, kg/m2), fat mass index (FMI, kg/m2), FMI-adjusted ALMI (ALMfmi), ratio of ALM to weight index (ALMwt), ratio of ALM to body mass index (ALMbmi) and ratio of ALM to truncal fat index (ALMtrunkfat) were measured by dual energy X-ray absorptiometry in 17,870 participants from 2008 to 2011. We adopted all the aforementioned indices of low muscle mass expressed as sex- and age-specific standard deviation scores (Z-scores). Low muscle mass for age was defined as Z-score <−1. The prevalence of low muscle mass was approximately 16% across all indices. Low muscle mass defined by ALMI had low muscle mass and low fat mass, and ALMfmi had low muscle mass at the same FMI. However, low muscle mass defined by ALMwt, ALMbmi and ALMtrunkfat had similar muscle mass with high FMI. The receiver operating characteristic curve in metabolic syndrome showed that the ALMtrunkfat was 0.74 in male and 0.69 in female, indicating that ALMtrunkfat was the best discrimination index for metabolic syndrome. This study showed that ALMtrunkfat could be a useful indicator for screening cardiometabolic risk factors, particularly in normal or overweight Asian population.
Structure-Mechanical Property Relations of Skin-Core Regions of Poly(p-phenylene terephthalamide) Single Fiber
Authors: Chabi Sakineh , Dikin Dmitriy A. , Yin Jie , Percec Simona , Ren Fei 
Published: January 2019

AbstractThis study aims to elucidate the relationship between the mechanical properties and microstructures of poly(p-phenylene terephthalamide) (PPTA) single fibers at the micro/nano scale. The skin-core structure of Kevlar® 29 fiber was revealed through a focused electron beam experiment inside a scanning electron microscope (SEM) chamber. Cross sectional SEM images of the broken fiber showed that the thickness of the skin ranged from 300 to 800 nm and that the core region consisted of highly packed layers of fibrils. The skin and the core regions showed different mechanical behaviour and structural changes during nanoindentation and micro-tensile tests, indicating that the core region possessed higher stiffness, whereas the skin region could undergo more plastic deformation. Furthermore, micro-tensile testing results showed that the ultimate tensile strength, the elongation at failure, and the tensile toughness of single fibers could be significantly enhanced by cyclic loading. Such findings are important to understand the contribution of different microstructures of Kevlar® fibers to their mechanical performance, which in turn can be utilized to design high-performance fibers that are not limited by the trade-off between toughness and stiffness.
Mitochondrial haplogroups are not associated with diabetic retinopathy in a large Australian and British Caucasian sample
Authors: Liu Ebony , Kaidonis Georgia , Gillies Mark C. , Abhary Sotoodeh , Essex Rohan W. , Chang John H. , Pal Bishwanath , Daniell Mark , Lake Stewart , Gilhotra Jolly , Petrovsky Nikolai , Hewitt Alex W. , Jenkins Alicia , Lamoureux Ecosse L. , Gleadle Jonathan M. , Burdon Kathryn P. , Craig Jamie E. 
Published: January 2019

AbstractMitochondrial haplogroups H1, H2 and UK have previously been reported to be associated with proliferative diabetic retinopathy (PDR) in Caucasian patients with diabetes. We aimed to replicate this finding with a larger sample and expand the analysis to include different severities of DR, and diabetic macular edema (DME). Caucasian participants (n = 2935) with either type 1 or type 2 diabetes from the Australian Registry of Advanced Diabetic Retinopathy were enrolled in this study. Twenty-two mitochondrial single nucleotide polymorphisms were genotyped by MassArray and haplogroups reconstructed using Haplogrep. Chi square tests and logistic regressions were used to test associations between haplogroup and DR phenotypes including any DR, non-proliferative DR (NPDR), proliferative DR (PDR) and DME. After stratifying the samples in type 1 and type 2 diabetes groups, and adjusting for sex, age, diabetes duration, concurrent HbA1c and hypertension, neither haplogroups H1, H2, UK, K or JT were associated with any DR, NPDR, PDR or DME.
Pomegranate activates TFEB to promote autophagy-lysosomal fitness and mitophagy
Authors: Tan Sijie , Yu Chye Yun , Sim Zhi Wei , Low Zun Siong , Lee Brianna , See Faith , Min Nyo , Gautam Archana , Chu Justin Jang Hann , Ng Kee Woei , Wong Esther 
Published: January 2019

AbstractMitochondrial dysfunction underscores aging and diseases. Mitophagy (mitochondria + autophagy) is a quality control pathway that preserves mitochondrial health by targeting damaged mitochondria for autophagic degradation. Hence, molecules or compounds that can augment mitophagy are therapeutic candidates to mitigate mitochondrial-related diseases. However, mitochondrial stress remains the most effective inducer of mitophagy. Thus, identification of mitophagy-inducing regimes that are clinically relevant is favorable. In this study, pomegranate extract (PE) supplementation is shown to stimulate mitophagy. PE activates transcription factor EB (TFEB) to upregulate the expression of autophagy and lysosomal genes for mitochondrial quality control under basal and stress conditions. Basally, PE alters mitochondrial morphology and promotes recruitment of autophagosomes to the mitochondria (mitophagosome formation). Upon onset of mitochondrial stress, PE further augments mitophagosome formation, and engages PINK1 and Parkin to the mitochondria to potentiate mitophagy. This cellular phenomenon of PE-induced mitophagy helps to negate superfluous mitochondrial reactive oxygen species (ROS) production and mitochondrial impairment. Overall, our study highlights the potential of PE supplementation as a physiological therapy to modulate TFEB activity to alleviate mitochondrial dysfunction in aging and mitochondrial-related diseases.
Inter-digital capacitors with aerosol-deposited high-K dielectric layer for highest capacitance value in capacitive super-sensing applications
Authors: Kim Eun-Seong , Liang Jun-Ge , Wang Cong , Cho Myung-Yeon , Oh Jong-Min , Kim Nam-Young 
Published: January 2019

AbstractInter-digital capacitors (IDCs) with aerosol-deposition (AD) high-k dielectric layer were compared via simulation and measurements of bare IDCs and AD IDCs at room temperature and subjected to a post-annealing process for realizing capacitive super-sensing applications. IDCs with thin AD films can provide higher capacitive intensity and improvements for other dielectric performances. Therefore, IDC patterns with AD high-k dielectric layers were fabricated by varying the finger widths and gap. Moreover, we analyzed the layer microstructure design patterns using simulations and experiments with AD BaTiO3 as-deposited IDCs and IDCs subjected to annealing at 500 °C. These three different IDCs were measured using an impedance analyzer; furthermore, the AD BaTiO3 films were evaluated using X-ray diffraction, atomic force microscopy, and traveling electron microscopy. The results for the IDCs with the AD BaTiO3 film show the highest capacitance when compared with other thin layer capacitors, which is expected to be useful in realizing super-sensing applications in the future.
Lack of strategic service provisioning by Pederson’s cleaner shrimp (Ancylomenes pedersoni) highlights independent evolution of cleaning behaviors between ocean basins
Authors: Titus Benjamin M. , Daly Marymegan , Vondriska Clayton , Hamilton Ian , Exton Dan A. 
Published: January 2019

AbstractMarine cleaning interactions have been useful model systems for exploring evolutionary game theory and explaining the stability of mutualism. In the Indo-Pacific, cleaner organisms will occasionally “cheat” and remove live tissue, clients use partner control mechanisms to maintain cleaner honesty, and cleaners strategically increase service quality for predatory clients that can “punish” more severely. The extent to which reef communities in the Caribbean have evolved similar strategies for maintaining the stability of these symbioses is less clear. Here we study the strategic service provisioning in Pederson’s cleaner shrimp (Ancylomenes pedersoni) on Caribbean coral reefs. In the Gulf of Honduras, we use video observations to analyze >1000 cleaning interactions and record >850 incidents of cheating. We demonstrate that A. pedersoni cheat frequently and do not vary their service quality based on client trophic position or cleaner shrimp group size. As a direct analog to the cleaner shrimp A. longicarpus in the Indo-Pacific, our study highlights that although cleaning interactions in both ocean basins are ecologically analogous and result in parasite removal, the strategic behaviors that mediate these interactions have evolved independently in cleaner shrimps.
Photocatalytic Degradation of Bisphenol-A using N, Co Codoped TiO2 Catalyst under Solar Light
Authors: Garg Alok , Singhania Tejasvi , Singh Ashutosh , Sharma Shilpa , Rani Sonam , Neogy Ananya , Yadav Shri Ram , Sangal Vikas Kumar , Garg Neha 
Published: January 2019

AbstractAdvanced oxidation processes (AOPs) including heterogeneous photocatalysis has proven as one of the best technique for waste-water treatment. Photocatalytic process using semiconductor like TiO2 based heterogeneous photocatalysis is a promising method for the treatment of toxic pollutants. In the present study, visible-light photoactive cobalt and nitrogen co-doped TiO2 nanoparticles were synthesized via wet impregnation method. The photocatalysts were characterized using X-ray diffraction (XRD), Raman Spectra, Fourier Transform Infrared (FTIR) Spectroscopy, Scanning Electron Microscopy (SEM), Transmission Electron Microscope (TEM), UV-vis spectrophotometer and X-ray photoelectron spectrophotometer (XPS). The photocatalytic activitiy of prepared (N, Co)-codoped TiO2 on the mineralization of Bisphenol-A (BPA) under visible light irradiation was studied and the results were compared to commercial TiO2 (Degussa P25). The results demonstrated that 1.5% Co and 0.5% N – codoped TiO2 samples revealed higher activity than commercial TiO2. Total organic carbon (TOC) removal was observed to be 97%, which indicate the complete mineralization of BPA. GC-MS analysis was carried to find out the possible intermediates formed and reaction pathway.
Acute tobacco smoke exposure exacerbates the inflammatory response to corneal wounds in mice via the sympathetic nervous system
Authors: Xiao Chengju , Wu Mingjuan , Liu Jun , Gu Jianqin , Jiao Xinwei , Lu Dingli , He Jingxin , Lin Cuipei , Xue Yunxia , Fu Ting , Wang Hanqing , Wang Guang , Yang Xuesong , Li Zhijie 
Published: January 2019

AbstractExposure to tobacco smoke is a major public health concern that can also affect ophthalmic health. Based on previous work demonstrating the important role of the sympathetic nervous system (SNS) in corneal wound repair, we postulated that acute tobacco smoke exposure (ATSE) may act through the SNS in the impairment of corneal wound repair. Here we find that ATSE rapidly increases the markers of inflammatory response in normal corneal limbi. After an abrasion injury, ATSE exaggerates inflammation, impairs wound repair, and enhances the expression of nuclear factor-κB (NF-κB) and inflammatory molecules such as interleukin-6 (IL-6) and IL-17. We find that chemical SNS sympathectomy, local adrenergic receptor antagonism,NF-κB1inactivation, and IL-6/IL-17A neutralization can all independently attenuate ATSE-induced excessive inflammatory responses and alleviate their impairment of the healing process. These findings highlight that the SNS may represent a major molecular sensor and mediator of ATSE-induced inflammation.
Collective cell migration of Dictyostelium without cAMP oscillations at multicellular stages
Authors: Hashimura Hidenori , Morimoto Yusuke V. , Yasui Masato , Ueda Masahiro 
Published: January 2019

AbstractIn Dictyostelium discoideum, a model organism for the study of collective cell migration, extracellular cyclic adenosine 3’,5’-monophosphate (cAMP) acts as a diffusible chemical guidance cue for cell aggregation, which has been thought to be important in multicellular morphogenesis. Here we revealed that the dynamics of cAMP-mediated signaling showed a transition from propagating waves to steady state during cell development. Live-cell imaging of cytosolic cAMP levels revealed that their oscillation and propagation in cell populations were obvious for cell aggregation and mound formation stages, but they gradually disappeared when multicellular slugs started to migrate. A similar transition of signaling dynamics occurred with phosphatidylinositol 3,4,5-trisphosphate signaling, which is upstream of the cAMP signal pathway. This transition was programmed with concomitant developmental progression. We propose a new model in which cAMP oscillation and propagation between cells, which are important at the unicellular stage, are unessential for collective cell migration at the multicellular stage.