bluuebunny/crossref_metadata_2025_split huggingface dataset:
Hotspots of soil organic carbon storage revealed by laboratory hyperspectral imaging
Authors: Hobley Eleanor , Steffens Markus , Bauke Sara L. , Kögel-Knabner Ingrid 
Published: September 2018

AbstractSubsoil organic carbon (OC) is generally lower in content and more heterogeneous than topsoil OC, rendering it difficult to detect significant differences in subsoil OC storage. We tested the application of laboratory hyperspectral imaging with a variety of machine learning approaches to predict OC distribution in undisturbed soil cores. Using a bias-corrected random forest we were able to reproduce the OC distribution in the soil cores with very good to excellent model goodness-of-fit, enabling us to map the spatial distribution of OC in the soil cores at very high resolution (~53 × 53 µm). Despite a large increase in variance and reduction in OC content with increasing depth, the high resolution of the images enabled statistically powerful analysis in spatial distribution of OC in the soil cores. In contrast to the relatively homogeneous distribution of OC in the plough horizon, the subsoil was characterized by distinct regions of OC enrichment and depletion, including biopores which contained ~2–10 times higher SOC contents than the soil matrix in close proximity. Laboratory hyperspectral imaging enables powerful, fine-scale investigations of the vertical distribution of soil OC as well as hotspots of OC storage in undisturbed samples, overcoming limitations of traditional soil sampling campaigns.
Mesocosm experiments reveal the impact of mosquito control measures on malaria vector life history and population dynamics
Authors: Ng’habi Kija , Viana Mafalda , Matthiopoulos Jason , Lyimo Issa , Killeen Gerry , Ferguson Heather M. 
Published: September 2018

AbstractThe impact of control measures on mosquito vector fitness and demography is usually estimated from bioassays or indirect variables in the field. Whilst indicative, neither approach is sufficient to quantify the potentially complex response of mosquito populations to combined interventions. Here, large replicated mesocosms were used to measure the population-level response of the malaria vector Anopheles arabiensis to long-lasting insecticidal nets (LLINs) when used in isolation, or combined with insecticidal eave louvers (EL), or treatment of cattle with the endectocide Ivermectin (IM). State-space models (SSM) were fit to these experimental data, revealing that LLIN introduction reduced adult mosquito survival by 91% but allowed population persistence. ELs provided no additional benefit, but IM reduced mosquito fecundity by 59% and nearly eliminated all populations when combined with LLINs. This highlights the value of IM for integrated vector control, and mesocosm population experiments combined with SSM for identifying optimal combinations for vector population elimination.
Kidney-resident macrophages promote a proangiogenic environment in the normal and chronically ischemic mouse kidney
Authors: Puranik Amrutesh S. , Leaf Irina A. , Jensen Mark A. , Hedayat Ahmad F. , Saad Ahmad , Kim Ki-Wook , Saadalla Abdulrahman M. , Woollard John R. , Kashyap Sonu , Textor Stephen C. , Grande Joseph P. , Lerman Amir , Simari Robert D. , Randolph Gwendalyn J. , Duffield Jeremy S. , Lerman Lilach O. 
Published: September 2018

AbstractRenal artery stenosis (RAS) caused by narrowing of arteries is characterized by microvascular damage. Macrophages are implicated in repair and injury, but the specific populations responsible for these divergent roles have not been identified. Here, we characterized murine kidney F4/80+CD64+ macrophages in three transcriptionally unique populations. Using fate-mapping and parabiosis studies, we demonstrate that CD11b/cint are long-lived kidney-resident (KRM) while CD11chiMϕ, CD11cloMϕ are monocyte-derived macrophages. In a murine model of RAS, KRM self-renewed, while CD11chiMϕ and CD11cloMϕ increased significantly, which was associated with loss of peritubular capillaries. Replacing the native KRM with monocyte-derived KRM using liposomal clodronate and bone marrow transplantation followed by RAS, amplified loss of peritubular capillaries. To further elucidate the nature of interactions between KRM and peritubular endothelial cells, we performed RNA-sequencing on flow-sorted macrophages from Sham and RAS kidneys. KRM showed a prominent activation pattern in RAS with significant enrichment in reparative pathways, like angiogenesis and wound healing. In culture, KRM increased proliferation of renal peritubular endothelial cells implying direct pro-angiogenic properties. Human homologs of KRM identified as CD11bintCD11cintCD68+ increased in post-stenotic kidney biopsies from RAS patients compared to healthy human kidneys, and inversely correlated to kidney function. Thus, KRM may play protective roles in stenotic kidney injury through expansion and upregulation of pro-angiogenic pathways.
Adolescent cannabinoid exposure induces irritability-like behavior and cocaine cross-sensitization without affecting the escalation of cocaine self-administration in adulthood
Authors: Kononoff Jenni , Melas Philippe A. , Kallupi Marsida , de Guglielmo Giordano , Kimbrough Adam , Scherma Maria , Fadda Paola , Kandel Denise B. , Kandel Eric R. , George Olivier 
Published: September 2018

AbstractCannabis use is typically initiated during adolescence and is a significant risk factor for the development of cocaine use in adulthood. However, no preclinical studies have examined the effects of adolescent cannabinoid exposure on cocaine dependence in adulthood using the escalation model of cocaine self-administration and the assessment of negative emotional states. In the present study, we found that exposure to the cannabinoid receptor agonist WIN55,212-2 (WIN) in adolescence produced irritability-like behavior and psychomotor cross-sensitization to cocaine in adolescence. In adulthood, rats were allowed to self-administer cocaine. The acquisition of cocaine self-administration was lower in rats with adolescent WIN exposure compared with controls. However, both WIN-exposed and control rats escalated their cocaine intake at the same rate, had similar responding under a progressive-ratio schedule of reinforcement, and had similar psychomotor responses to cocaine. Interestingly, the increase in irritability-like behavior that was previously observed in adolescence after WIN exposure persisted into adulthood. Whether the persisting increase in irritability-like behavior after WIN exposure has translational relevance remains to be studied. In summary, these results suggest that psychoactive cannabinoid exposure during adolescence is unlikely to have a major effect on the escalation of cocaine intake or the development of compulsive-like responding per se in adulthood in a rat model of cocaine self-administration. However, whether the persisting irritability-like behavior may predispose an individual to mood-related impairments in adulthood or predict such impairments warrants further investigation.
Highly tunable repetition-rate multiplication of mode-locked lasers using all-fibre harmonic injection locking
Authors: Jeon Chan-Gi , Zhang Shuangyou , Shin Junho , Kim Jungwon 
Published: September 2018

AbstractHigher repetition-rate optical pulse trains have been desired for various applications such as high-bit-rate optical communication, photonic analogue-to-digital conversion, and multi-photon imaging. Generation of multi GHz and higher repetition-rate optical pulse trains directly from mode-locked oscillators is often challenging. As an alternative, harmonic injection locking can be applied for extra-cavity repetition-rate multiplication (RRM). Here we have investigated the operation conditions and achievable performances of all-fibre, highly tunable harmonic injection locking-based pulse RRM. We show that, with slight tuning of slave laser length, highly tunable RRM is possible from a multiplication factor of 2 to >100. The resulting maximum SMSR is 41 dB when multiplied by a factor of two. We further characterize the noise properties of the multiplied signal in terms of phase noise and relative intensity noise. The resulting absolute rms timing jitter of the multiplied signal is in the range of 20 fs to 60 fs (10 kHz–1MHz) for different multiplication factors. With its high tunability, simple and robust all-fibre implementation, and low excess noise, the demonstrated RRM system may find diverse applications in microwave photonics, optical communications, photonic analogue-to-digital conversion, and clock distribution networks.
Hierarchical Aerographite 3D flexible networks hybridized by InP micro/nanostructures for strain sensor applications
Authors: Plesco Irina , Strobel Julian , Schütt Fabian , Himcinschi Cameliu , Ben Sedrine Nabiha , Monteiro Teresa , Correia Maria Rosário , Gorceac Leonid , Cinic Boris , Ursaki Veaceslav , Marx Janik , Fiedler Bodo , Mishra Yogendra Kumar , Kienle Lorenz , Adelung Rainer , Tiginyanu Ion 
Published: September 2018

AbstractIn the present work, we report on development of three-dimensional flexible architectures consisting of an extremely porous three-dimensional Aerographite (AG) backbone decorated by InP micro/nanocrystallites grown by a single step hydride vapor phase epitaxy process. The systematic investigation of the hybrid materials by scanning electron microscopy demonstrates a rather uniform spatial distribution of InP crystallites without agglomeration on the surface of Aerographite microtubular structures. X-ray diffraction, transmission electron microscopy and Raman scattering analysis demonstrate that InP crystallites grown on bare Aerographite are of zincblende structure, while a preliminary functionalization of the Aerographite backbone with Au nanodots promotes the formation of crystalline In2O3 nanowires as well as gold-indium oxide core-shell nanostructures. The electromechanical properties of the hybrid AG-InP composite material are shown to be better than those of previously reported bare AG and AG-GaN networks. Robustness, elastic behavior and excellent translation of the mechanical deformation to variations in electrical conductivity highlight the prospects of AG-InP applications in tactile/strain sensors and other device structures related to flexible electronics.
Method for high frequency tracking and sub-nm sample stabilization in single molecule fluorescence microscopy
Authors: Schmidt Patrick D. , Reichert Benjamin H. , Lajoie John G. , Sivasankar Sanjeevi 
Published: September 2018

AbstractWhile fluorescence microscopes and atomic force microscopes are widely used to visualize, track, and manipulate single biomolecules, the resolution of these methods is limited by sample drift. To minimize drift, active feedback methods have recently been used to stabilize single molecule microscopes on the sub-nanometer scale. However, these methods require high intensity lasers which limits their application in single molecule fluorescence measurements. Furthermore, these feedback methods do not track user-defined regions of the sample, but rather monitor the relative displacement of an unknown point on a fiducial marker, which limits their use in biological force measurements. To overcome these limitations, we have developed a novel method to image, track and stabilize a sample using low laser intensities. We demonstrate the capabilities of our approach by tracking a user-chosen point on a fiducial marker at 8.6 kHz and stabilizing it with sub-nanometer resolution. We further showcase the application of our method in single molecule fluorescence microscopy by imaging and stabilizing individual fluorescently-tagged streptavidin proteins under biologically relevant conditions. We anticipate that our method can be easily used to improve the resolution of a wide range of single molecule fluorescence microscopy and integrated force-fluorescence applications.
Assembly of Plasmonic and Magnetic Nanoparticles with Fluorescent Silica Shell Layer for Tri-functional SERS-Magnetic-Fluorescence Probes and Its Bioapplications
Authors: Kim Hyung-Mo , Kim Dong-Min , Jeong Cheolhwan , Park So Yeon , Cha Myeong Geun , Ha Yuna , Jang Dahye , Kyeong San , Pham Xuan-Hung , Hahm Eunil , Lee Sang Hun , Jeong Dae Hong , Lee Yoon-Sik , Kim Dong-Eun , Jun Bong-Hyun 
Published: September 2018

AbstractIn this study, we report on the fabrication of multilayered tri-functional magnetic-SERS-fluorescence nanoprobes (MF-SERS particles) containing clustered superparamagnetic Fe3O4 nanoparticles (NPs), silver NPs, and a fluorescent silica layer. The MF-SERS particles exhibited strong SERS signals from the silver NPs as well as both superparamagnetism and fluorescence. MF–SERS particles were uptaken by cells, allowing successful separation using an external magnetic field. SERS and fluorescence signals could be detected from the NP-containing cells, and CD44 antibody-conjugated MF-SERS particles selectively targeted MDA-MB-231 cells. Based on these properties, MF-SERS particles proved to be a useful nanoprobe for multiplex detection and separation of cancer cells.
sox9b is required in cardiomyocytes for cardiac morphogenesis and function
Authors: Gawdzik Joseph C. , Yue Monica S. , Martin Nathan R. , Elemans Loes M. H. , Lanham Kevin A. , Heideman Warren , Rezendes Ryan , Baker Tracie R. , Taylor Michael R. , Plavicki Jessica S. 
Published: September 2018

AbstractThe high mobility group transcription factor SOX9 is expressed in stem cells, progenitor cells, and differentiated cell-types in developing and mature organs. Exposure to a variety of toxicants including dioxin, di(2-ethylhexyl) phthalate, 6:2 chlorinated polyfluorinated ether sulfonate, and chlorpyrifos results in the downregulation of tetrapod Sox9 and/or zebrafish sox9b. Disruption of Sox9/sox9b function through environmental exposures or genetic mutations produce a wide range of phenotypes and adversely affect organ development and health. We generated a dominant-negative sox9b (dnsox9b) to inhibit sox9b target gene expression and used the Gal4/UAS system to drive dnsox9b specifically in cardiomyocytes. Cardiomyocyte-specific inhibition of sox9b function resulted in a decrease in ventricular cardiomyocytes, an increase in atrial cardiomyocytes, hypoplastic endothelial cushions, and impaired epicardial development, ultimately culminating in heart failure. Cardiomyocyte-specific dnsox9b expression significantly reduced end diastolic volume, which corresponded with a decrease in stroke volume, ejection fraction, and cardiac output. Further analysis of isolated cardiac tissue by RT-qPCR revealed cardiomyocyte-specific inhibition of sox9b function significantly decreased the expression of the critical cardiac development genes nkx2.5, nkx2.7, and myl7, as well as c-fos, an immediate early gene necessary for cardiomyocyte progenitor differentiation. Together our studies indicate sox9b transcriptional regulation is necessary for cardiomyocyte development and function.
Attentional Guidance from Multiple Working Memory Representations: Evidence from Eye Movements
Authors: Zhang Bao , Liu Shuhui , Doro Mattia , Galfano Giovanni 
Published: September 2018

AbstractRecent studies have shown that the representation of an item in visual working memory (VWM) can bias the deployment of attention to stimuli in the visual scene possessing the same features. When multiple item representations are simultaneously held in VWM, whether these representations, especially those held in a non-prioritized or accessory status, are able to bias attention, is still controversial. In the present study we adopted an eye tracking technique to shed light on this issue. In particular, we implemented a manipulation aimed at prioritizing one of the VWM representation to an active status, and tested whether attention could be guided by both the prioritized and the accessory representations when they reappeared as distractors in a visual search task. Notably, in Experiment 1, an analysis of first fixation proportion (FFP) revealed that both the prioritized and the accessory representations were able to capture attention suggesting a significant attentional guidance effect. However, such effect was not present in manual response times (RT). Most critically, in Experiment 2, we used a more robust experimental design controlling for different factors that might have played a role in shaping these findings. The results showed evidence for attentional guidance from the accessory representation in both manual RTs and FFPs. Interestingly, FFPs showed a stronger attentional bias for the prioritized representation than for the accessory representation across experiments. The overall findings suggest that multiple VWM representations, even the accessory representation, can simultaneously interact with visual attention.
Spatio-temporal characteristics of population responses evoked by microstimulation in the barrel cortex
Authors: Margalit Shany Nivinsky , Slovin Hamutal 
Published: September 2018

AbstractIntra-cortical microstimulation (ICMS) is a widely used technique to artificially stimulate cortical tissue. This method revealed functional maps and provided causal links between neuronal activity and cognitive, sensory or motor functions. The effects of ICMS on neural activity depend on stimulation parameters. Past studies investigated the effects of stimulation frequency mainly at the behavioral or motor level. Therefore the direct effect of frequency stimulation on the evoked spatio-temporal patterns of cortical activity is largely unknown. To study this question we used voltage-sensitive dye imaging to measure the population response in the barrel cortex of anesthetized rats evoked by high frequency stimulation (HFS), a lower frequency stimulation (LFS) of the same duration or a single pulse stimulation. We found that single pulse and short trains of ICMS induced cortical activity extending over few mm. HFS evoked a lower population response during the sustained response and showed a smaller activation across time and space compared with LFS. Finally the evoked population response started near the electrode site and spread horizontally at a propagation velocity in accordance with horizontal connections. In summary, HFS was less effective in cortical activation compared to LFS although HFS had 5 fold more energy than LFS.
Human-like smelling of a rose scent using an olfactory receptor nanodisc-based bioelectronic nose
Authors: Lee Minju , Yang Heehong , Kim Daesan , Yang Myungjae , Park Tai Hyun , Hong Seunghun 
Published: September 2018

AbstractWe report a strategy for the human-like smelling of a rose scent utilizing olfactory receptor nanodisc (ND)-based bioelectronic nose devices. In this strategy, a floating electrode (FE)-based carbon nanotube (CNT) field effect transistor (FET) was functionalized with human olfactory receptor 1A2 (hOR1A2)-embedded NDs (hOR1A2NDs). The hOR1A2NDs responded to rose scent molecules specifically, which were monitored electrically using the underlying CNT-FET. This strategy allowed us to quantitatively assess the contents of geraniol and citronellol, the main components of a rose scent, as low as 1 fM and 10 fM, respectively. In addition, it enabled us to selectively discriminate a specific rose odorant from other odorants. Significantly, we also demonstrated that the responses of hOR1A2NDs to a rose scent could be strongly enhanced by enhancer materials like a human nose. Furthermore, the method provided a means to quantitatively evaluate rose scent components in real samples such as rose oil. Since our method allows one to quantitatively evaluate general rose scent ingredients just like a human nose, it could be a powerful strategy for versatile basic research and various applications such as fragrance development.
Anisotropic Multi-channel Collagen Gel (MCCG) Guides the Growth Direction of the Neurite-like Processes of PC12 Cells
Authors: Koh Isabel , Furusawa Kazuya , Haga Hisashi 
Published: September 2018

AbstractHydrogels made of various materials using a variety of methods have been extensively studied for use in tissue engineering, and collagen is one of the most common material used for its biocompatibility due to it being a major component of the extracellular matrix (ECM). Furthermore, the alignment of collagen fibres has been shown to direct the growth of neurites, an important criterion for engineering nervous tissues. The Multi-channel Collagen Gel (MCCG) has collagen fibres aligned circumferentially around the channel structures of the gel, and we predicted that the MCCG could guide the growth direction of neurites. In this study, we showed that the growth pathway of the neurite-like processes of PC12 cells were guided in MCCG but not in normal collagen gel (COL). The gelation of collagen gels are known to be affected by ionic concentrations, and hence we also investigated the effects of different concentrations of NaCl on the properties of MCCG. We found that, despite differences in channel density, spacing between channels, and degree of collagen fibre alignment, all MCCGs had similar guiding properties on the growth of neurites. Therefore, we believe that anisotropic MCCG could be a useful biomaterial for neural tissue engineering in the future.
Engineered Human Contractile Myofiber Sheets as a Platform for Studies of Skeletal Muscle Physiology
Authors: Takahashi Hironobu , Shimizu Tatsuya , Okano Teruo 
Published: September 2018

AbstractSkeletal muscle physiology and the mechanisms of muscle diseases can be effectively studied by an in-vitro tissue model produced by muscle tissue engineering. Engineered human cell-based tissues are required more than ever because of the advantages they bring as tissue models in research studies. This study reports on a production method of a human skeletal myofiber sheet that demonstrates biomimetic properties including the aligned structure of myofibers, basement membrane-like structure of the extracellular matrix, and unidirectional contractile ability. The contractile ability and drug responsibility shown in this study indicate that this engineered muscle tissue has potential as a human cell-based tissue model for clinically relevant in-vitro studies in muscle physiology and drug discovery. Moreover, this engineered tissue can be used to better understand the relationships between mechanical stress and myogenesis, including muscle growth and regeneration. In this study, periodic exercise induced by continuous electrical pulse stimulation enhanced the contractile ability of the engineered myofibers and the secretion of interleukin-6 (IL-6) and vascular endothelial growth factor (VEGF) from the exercising myofibers. Since the physiology of skeletal muscle is directly related to mechanical stress, these features point to application as a tissue model and platform for future biological studies of skeletal muscle including muscle metabolism, muscle atrophy and muscle regeneration.