bluuebunny/crossref_metadata_2025_split huggingface dataset:
Effect of Antidepressants and Psychological Therapies in Irritable Bowel Syndrome: An Updated Systematic Review and Meta-Analysis
Authors: Ford Alexander C. , Lacy Brian E. , Harris Lucinda A. , Quigley Eamonn M.M. , Moayyedi Paul 
Published: September 2018

OBJECTIVES:
Irritable bowel syndrome (IBS) is a chronic functional bowel disorder that is thought to be due to a disorder of brain–gut function. Drugs acting centrally, such as antidepressants, and psychological therapies may, therefore, be effective.

METHODS:
We updated a previous systematic review and meta-analysis of randomized controlled trials (RCTs). MEDLINE, EMBASE, PsychINFO, and the Cochrane Controlled Trials Register were searched (up to July 2017). Trials recruiting adults with IBS, which compared antidepressants versus placebo, or psychological therapies versus control therapy or “usual management” were eligible. Dichotomous symptom data were pooled to obtain a relative risk (RR) of remaining symptomatic after therapy, with a 95% confidence interval (CI).

RESULTS:
The search strategy identified 5316 citations. Fifty-three RCTs, reported in 51 separate articles, were eligible for inclusion: 17 compared antidepressants with placebo, 35 compared psychological therapies with control therapy or “usual management”, and one compared both psychological therapy and antidepressants with placebo. Four of the trials of psychological therapies, and one of the RCTs of antidepressants, were identified since our previous meta-analysis. The RR of IBS symptoms not improving with antidepressants versus placebo was 0.66 (95% CI 0.57–0.76), with similar treatment effects for both tricyclic antidepressants and SSRIs, although with heterogeneity between RCTs of the latter (I
2 = 49%, P = 0.07). The RR of symptoms not improving with psychological therapies was 0.69 (95% CI 0.62–0.76). Cognitive behavioral therapy, relaxation therapy, multi-component psychological therapy, hypnotherapy, and dynamic psychotherapy were all beneficial when data from two or more RCTs were pooled. There was significant heterogeneity between studies (I
2 = 69%, P < 0.001) and significant funnel plot asymmetry. There were also issues regarding trial design, including lack of blinding.

CONCLUSIONS:
Antidepressants are efficacious in reducing symptoms in IBS patients. Psychological therapies also appear to be effective treatments for IBS, although there are limitations in the quality of the evidence, and treatment effects may be overestimated as a result.
Highly efficient genome editing by CRISPR-Cpf1 using CRISPR RNA with a uridinylate-rich 3′-overhang
Authors: Bin Moon Su , Lee Jeong Mi , Kang Jeong Gu , Lee Nan-Ee , Ha Dae-In , Kim Do Yon , Kim Sun Hee , Yoo Kwangsun , Kim Daesik , Ko Jeong-Heon , Kim Yong-Sam 
Published: September 2018

AbstractGenome editing has been harnessed through the development of CRISPR system, and the CRISPR from Prevotella and Francisella 1 (Cpf1) system has emerged as a promising alternative to CRISPR-Cas9 for use in various circumstances. Despite the inherent multiple advantages of Cpf1 over Cas9, the adoption of Cpf1 has been unsatisfactory because of target-dependent insufficient indel efficiencies. Here, we report an engineered CRISPR RNA (crRNA) for highly efficient genome editing by Cpf1, which includes a 20-base target-complementary sequence and a uridinylate-rich 3′-overhang. When the crRNA is transcriptionally produced, crRNA with a 20-base target-complementary sequence plus a U4AU4 3′-overhang is the optimal configuration. U-rich crRNA also maximizes the utility of the AsCpf1 mutants and multiplexing genome editing using mRNA as the source of multiple crRNAs. Furthermore, U-rich crRNA enables a highly safe and specific genome editing using Cpf1 in human cells, contributing to the enhancement of a genome-editing toolbox.
Microstructure design using graphs
Authors: Du Pengfei , Zebrowski Adrian , Zola Jaroslaw , Ganapathysubramanian Baskar , Wodo Olga 
Published: September 2018

AbstractThin films with tailored microstructures are an emerging class of materials with applications such as battery electrodes, organic electronics, and biosensors. Such thin film devices typically exhibit a multi-phase microstructure that is confined, and show large anisotropy. Current approaches to microstructure design focus on optimizing bulk properties, by tuning features that are statistically averaged over a representative volume. Here, we report a tool for morphogenesis posed as a graph-based optimization problem that evolves microstructures recognizing confinement and anisotropy constraints. We illustrate the approach by designing optimized morphologies for photovoltaic applications, and evolve an initial morphology into an optimized morphology exhibiting substantially improved short circuit current (68% improvement over a conventional bulk-heterojunction morphology). We show optimized morphologies across a range of thicknesses exhibiting self-similar behavior. Results suggest that thicker films (250 nm) can be used to harvest more incident energy. Our graph based morphogenesis is broadly applicable to microstructure-sensitive design of batteries, biosensors and related applications.
Robust increase of leaf size by Arabidopsis thaliana GRF3-like transcription factors under different growth conditions
Authors: Beltramino Matías , Ercoli María Florencia , Debernardi Juan Manuel , Goldy Camila , Rojas Arantxa M. L. , Nota Florencia , Alvarez María Elena , Vercruyssen Liesbeth , Inzé Dirk , Palatnik Javier F. , Rodriguez Ramiro E. 
Published: September 2018

AbstractAn increase in crop yield is essential to reassure food security to meet the accelerating global demand. Several genetic modifications can increase organ size, which in turn might boost crop yield. Still, only in a few cases their performance has been evaluated under stress conditions. MicroRNA miR396 repress the expression of GROWTH-REGULATING FACTOR (GRF) genes that codes for transcription factors that promote organ growth. Here, we show that both Arabidopsis thaliana At-GRF2 and At-GRF3 genes resistant to miR396 activity (rGRF2 and rGRF3) increased organ size, but only rGRF3 can produce this effect without causing morphological defects. Furthermore, introduction of At-rGRF3 in Brassica oleracea can increase organ size, and when At-rGRF3 homologs from soybean and rice are introduced in Arabidopsis, leaf size is also increased. This suggests that regulation of GRF3 activity by miR396 is important for organ growth in a broad range of species. Plants harboring rGRF3 have larger leaves also under drought stress, a condition that stimulates miR396 accumulation. These plants also showed an increase in the resistance to virulent bacteria, suggesting that the size increment promoted by rGRF3 occurs without an obvious cost on plant defenses. Our findings indicate that rGRF3 can increase plant organ size under both normal and stress conditions and is a valuable tool for biotechnological applications.
Implementation of an efficient linear-optical quantum router
Authors: Bartkiewicz Karol , Černoch Antonín , Lemr Karel 
Published: September 2018

AbstractFor several decades, scientists have been aware of significant benefits allowing quantum information processing technologies to surpass their classical counterparts. Recent technological development allows these benefits to be tested experimentally and in some cases also implemented in practical devices. So far the majority of experimental quantum networks was limited to peer-to-peer communications between two parties. Practical implementation of quantum communications networks, however, needs to address the problem of scalability to serve large numbers of users. Similarly to classical computer networks, their quantum counterparts would require routing protocols to direct the signal from its source to destination. Devices implementing these routing protocols are called quantum routers and have recently been subject of an intense research. In this paper, we report on experimental implementation of a linear-optical quantum router. Our device allows single-photon polarization-encoded qubits to be routed coherently into two spatial output modes depending on the state of two identical control qubits. The polarization qubit state of the routed photon is maintained during the routing operation. The success probability of our scheme can be increased up to 25% making it the most efficient linear-optical quantum router developed to this date.
Planar coil-based contact-mode magnetic stimulation: synaptic responses in hippocampal slices and thermal considerations
Authors: Park Hee-Jin , Kang Heekyung , Jo Jihoon , Chung Euiheon , Kim Sohee 
Published: September 2018

AbstractImplantable magnetic stimulation is an emerging type of neuromodulation using coils that are small enough to be implanted in the brain. A major advantage of this method is that stimulation performance could be sustained even though the coil is encapsulated by gliosis due to foreign body reactions. Magnetic fields can induce indirect electric fields and currents in neurons. Compared to transcranial magnetic stimulation, the coil size used in implantable magnetic stimulation can be greatly reduced. However, the size reduction is accompanied by an increase in coil resistance. Hence, the coil could potentially damage neurons from the excess heat generated. Therefore, it is necessary to study the stimulation performance and possible thermal damage by implantable magnetic stimulation. Here, we devised contact-mode magnetic stimulation (CMS), wherein magnetic stimulation was applied to hippocampal slices through a customized planar-type coil underneath the slice in the contact mode. With acute hippocampal slices, we investigated the synaptic responses to examine the field excitatory postsynaptic responses of CMS and the temperature rise during CMS. A long-lasting synaptic depression was exhibited in the CA1 stratum radiatum after CMS, while the temperature remained in a safe range so as not to seriously affect the neural responses.
A Transfer Learning Approach for Microstructure Reconstruction and Structure-property Predictions
Authors: Li Xiaolin , Zhang Yichi , Zhao He , Burkhart Craig , Brinson L. Catherine , Chen Wei 
Published: September 2018

AbstractStochastic microstructure reconstruction has become an indispensable part of computational materials science, but ongoing developments are specific to particular material systems. In this paper, we address this generality problem by presenting a transfer learning-based approach for microstructure reconstruction and structure-property predictions that is applicable to a wide range of material systems. The proposed approach incorporates an encoder-decoder process and feature-matching optimization using a deep convolutional network. For microstructure reconstruction, model pruning is implemented in order to study the correlation between the microstructural features and hierarchical layers within the deep convolutional network. Knowledge obtained in model pruning is then leveraged in the development of a structure-property predictive model to determine the network architecture and initialization conditions. The generality of the approach is demonstrated numerically for a wide range of material microstructures with geometrical characteristics of varying complexity. Unlike previous approaches that only apply to specific material systems or require a significant amount of prior knowledge in model selection and hyper-parameter tuning, the present approach provides an off-the-shelf solution to handle complex microstructures, and has the potential of expediting the discovery of new materials.
MMP8 and MMP9 gene polymorphisms were associated with breast cancer risk in a Chinese Han population
Authors: Wang Kai , Zhou Yi , Li Gang , Wen Xinli , Kou Yuan , Yu Jiao , He Haifeng , Zhao Qian , Xue Feng , Wang Jin , Zhao Xinhan 
Published: September 2018

AbstractMatrix metalloproteinases (MMPs) are a group of zinc-dependent endopeptidases that can breakdown almost all extracellular matrix components. MMP8 and MMP9 have been shown to be associated with breast cancer (BC) risk in European and American populations. However, few studies have focused on the polymorphisms of MMP8 and MMP9 in Chinese Han BC patients. We investigated nine single nucleotide polymorphisms (SNPs) in 571 BC cases and 578 controls to evaluating their association with risk of BC. The frequency of the “A” allele of rs3787268 was significantly lower in BC cases than in controls (P = 0.025). In the genetic model analysis, the minor allele “T” of rs11225394 in MMP8 was associated with increased risk of BC under the recessive model (P = 0.019), and the minor allele “A” of rs3787268 was associated with decreased risk of BC under the dominant model (P = 0.014). Additionally, the haplotype “AGTCA” constructed by rs3740938, rs2012390, rs1940475, rs11225394, and rs11225395 and the haplotype “CCG” constructed by rs3918249, rs3918254 and rs3787268 were associated with increased risk of BC (P < 0.05). Our data showed that polymorphisms of MMP8 and MMP9 may be associated with BC risk in the Chinese Han population.
Potent PDZ-Domain PICK1 Inhibitors that Modulate Amyloid Beta-Mediated Synaptic Dysfunction
Authors: Lin Edward Y. S. , Silvian Laura F. , Marcotte Douglas J. , Banos Charles C. , Jow Flora , Chan Timothy R. , Arduini Robert M. , Qian Fang , Baker Darren P. , Bergeron Chris , Hession Catherine A. , Huganir Richard L. , Borenstein Cassandra F. , Enyedy Istvan , Zou Jinming , Rohde Ellen , Wittmann Marion , Kumaravel Gnanasambandam , Rhodes Kenneth J. , Scannevin Robert H. , Dunah Anthone W. , Guckian Kevin M. 
Published: September 2018

AbstractProtein interacting with C kinase (PICK1) is a scaffolding protein that is present in dendritic spines and interacts with a wide array of proteins through its PDZ domain. The best understood function of PICK1 is regulation of trafficking of AMPA receptors at neuronal synapses via its specific interaction with the AMPA GluA2 subunit. Disrupting the PICK1-GluA2 interaction has been shown to alter synaptic plasticity, a molecular mechanism of learning and memory. Lack of potent, selective inhibitors of the PICK1 PDZ domain has hindered efforts at exploring the PICK1-GluA2 interaction as a therapeutic target for neurological diseases. Here, we report the discovery of PICK1 small molecule inhibitors using a structure-based drug design strategy. The inhibitors stabilized surface GluA2, reduced Aβ-induced rise in intracellular calcium concentrations in cultured neurons, and blocked long term depression in brain slices. These findings demonstrate that it is possible to identify potent, selective PICK1-GluA2 inhibitors which may prove useful for treatment of neurodegenerative disorders.
Single-shot memory-effect video
Authors: Li Xiaohan , Stevens Andrew , Greenberg Joel A. , Gehm Michael E. 
Published: September 2018

AbstractImaging through opaque scattering media is critically important in applications ranging from biological and astronomical imaging to metrology and security. While the random process of scattering in turbid media produces scattered light that appears uninformative to the human eye, a wealth of information is contained in the signal and can be recovered using computational post-processing techniques. Recent studies have shown that statistical correlations present in the scattered light, known as ‘memory effects’, allow for diffraction-limited imaging through opaque media without detailed knowledge of (or access to) the source or scatterer. However, previous methods require that the object and/or scatterer be static during the measurement. We overcome this limitation by combining traditional memory effect imaging with coded-aperture-based computational imaging techniques, which enables us to realize for the first time single-shot video of arbitrary dynamic scenes through dynamic, opaque media. This has important implications for a wide range of real-world imaging scenarios.
Degradation of tetrabromobisphenol A in a paddy soil during sequential anoxic-oxic incubation: Kinetics, metabolites, and potential pathways
Authors: Wei Gaoling , Zhao Haiqing , Huang Deyin , Hou Meifang 
Published: September 2018

AbstractDue to the increasing pollution of tetrabromobisphenol A (TBBPA) in paddy soils, it is of great importance to explore the degradation of TBBPA under repeated anoxic-oxic conditions. In the present study, the degradation of TBBPA (kinetics, metabolites and potential pathways) and the influence of low molecular weight organic acid i.e., lactic acid were investigated in a paddy soil during sequential anoxic-oxic incubations. Under the anoxic condition, TBBPA in the non-sterile soils was efficiently debrominated into three intermediates (including tri-BBPA, di-BBPA and mono-BBPA) and bisphenol A (BPA) with a rate constant (k) of 0.0371 d−1 and a half-life (t1/2) of 60.8 d. The debromination end product (BPA) steadily accumulated. Next, turning to the oxic conditions, the anaerobically accumulated BPA degraded rapidly, while the intermediates and TBBPA were desorbed from the bound residues and were persistent. The detection of tri-BBPA followed by di-BBPA and mono-BBPA thereafter indicated that the dehalogenation of TBBPA was likely a stepwise removal of bromine atoms. A pathway of TBBPA → tri-BBPA → di-BBPA → mono-BBPA → BPA was thus proposed for TBBPA degradation. The degradation of TBBPA and its metabolites was biologically mediated. Moreover, the biodegradation of TBBPA could be significantly accelerated by the addition of lactic acid as an exogenous carbon source and electron donor, with k being increased to 0.0766 d−1 and t1/2 being shortened to 31.9 d. The information will improve our understanding of biotic process associated with agronomic practices (such as applying organic fertilizers) contributing to TBBPA attenuation in the natural soil environment.
Accelerated phosphorus recovery from aqueous solution onto decorated sewage sludge carbon
Authors: Kong Lingjun , Hu Xingliang , Xie Ziying , Ren Xinyong , Long Jianyou , Su Minhua , Diao Zenghui , Chen Diyun , Shih Kaimin , Hou Li’an 
Published: September 2018

AbstractIn search of efficient phosphorus resource recovery and pollution remediation should be highly concerned due to the view of phosphorus nonrenewable and eutrophication. This work presented a new insight into conversion of sewage sludge into favorable carbonaceous adsorbent for accelerated removing and recovering phosphorus from aqueous solution, what addressed the issues of phosphorus recovery and pollution remediation as well as sludge disposal. Ca and water hyacinth were evolved to decorate sludge derived carbon. Effect of mass ratio of sludge, water hyacinth and calcium carbonate on the morphologies and adsorption kinetics was investigated. The adsorbents (SW-Ca-112) resulted from sludge in the presence of water hyacinth and CaCO3 in a mass ratio of 1:1:2 had the highest adsorption capacity of 49.50 mg/g P and adsorption rate. Decoration of Ca favored adsorption ability and the presence of water hyacinth accelerated the adsorption rate due to the enhanced porosity. Formation of acicular Ca5(PO4)3OH nanoparticles contributed to the favorable adsorption process. Thus, the contribution of decorated Ca and water hyacinth to the adsorption ability and rate to phosphorus was understand, providing important information on resource utilization of sewage sludge as efficient adsorbent for immobilizing phosphorus from aqueous solution.
Unilateral Exoskeleton Imposes Significantly Different Hemispherical Effect in Parietooccipital Region, but Not in Other Regions
Authors: Li Junhua , Thakor Nitish , Bezerianos Anastasios 
Published: September 2018

AbstractIn modern society, increasing people suffering from locomotor disabilities need an assistive exoskeleton to help them improve or restore ambulation. When walking is assisted by an exoskeleton, brain activities are altered as the closed-loop between brain and lower limbs is affected by the exoskeleton. Intuitively, a unilateral exoskeleton imposes differential effect on brain hemispheres (i.e., hemispherical effect) according to contralateral control mechanism. However, it is unclear whether hemispherical effect appears in whole hemisphere or particular region. To this end, we explored hemispherical effect on different brain regions using EEG data collected from 30 healthy participants during overground walking. The results showed that hemispherical effect was significantly different between regions when a unilateral exoskeleton was employed for walking assistance and no significance was observed for walking without the exoskeleton. Post-hoc t-test analysis revealed that hemispherical effect in the parietooccipital region significantly differed from other regions. In the parietooccipital region, a greater hemispherical effect was observed in beta band for exoskeleton-assisted walking compared to walking without exoskeleton, which was also found in the source analysis. These findings deepen the understanding of hemispherical effect of unilateral exoskeleton on brain and could aid the development of more efficient and suitable exoskeleton for walking assistance.
Establishment of keratinocyte cell lines from human hair follicles
Authors: Wagner Tanja , Gschwandtner Maria , Strajeriu Agata , Elbe-Bürger Adelheid , Grillari Johannes , Grillari-Voglauer Regina , Greiner Georg , Golabi Bahar , Tschachler Erwin , Mildner Michael 
Published: September 2018

AbstractThe advent of organotypic skin models advanced the understanding of complex mechanisms of keratinocyte differentiation. However, these models are limited by both availability of primary keratinocytes and donor variability. Keratinocytes derived from cultured hair follicles and interfollicular epidermis were immortalized by ectopic expression of SV40 and hTERT. The generated keratinocyte cell lines differentiated into stratified epidermis with well-defined stratum granulosum and stratum corneum in organotypic human skin models. They behaved comparable to primary keratinocytes regarding the expression of differentiation-associated proteins, cell junction components and proteins associated with cornification and formed a barrier against biotin diffusion. Mechanistically, we found that SV40 large T-antigen expression, accompanied by a strong p53 accumulation, was only detectable in the basal layer of the in vitro reconstructed epidermis. Inhibition of DNA-methylation resulted in expression of SV40 large T-antigen also in the suprabasal epidermal layers and led to incomplete differentiation of keratinocyte cell lines. Our study demonstrates the generation of keratinocyte cell lines which are able to fully differentiate in an organotypic skin model. Since hair follicles, as source for keratinocytes, can be obtained by minimally invasive procedures, our approach enables the generation of cell lines also from individuals not available for skin biopsies.