bluuebunny/crossref_metadata_2025_split huggingface dataset:
Site-specific manipulation of Arabidopsis loci using CRISPR-Cas9 SunTag systems
Authors: Papikian Ashot , Liu Wanlu , Gallego-Bartolomé Javier , Jacobsen Steven E. 
Published: February 2019

AbstractUnderstanding genomic functions requires site-specific manipulation of loci via efficient protein effector targeting systems. However, few approaches for targeted manipulation of the epigenome are available in plants. Here, we adapt the dCas9-SunTag system to engineer targeted gene activation and DNA methylation in Arabidopsis. We demonstrate that a dCas9-SunTag system utilizing the transcriptional activator VP64 drives robust and specific activation of several loci, including protein coding genes and transposable elements, in diverse chromatin contexts. In addition, we present a CRISPR-based methylation targeting system for plants, utilizing a SunTag system with the catalytic domain of the Nicotiana tabacum DRM methyltransferase, which efficiently targets DNA methylation to specific loci, including the FWA promoter, triggering a developmental phenotype, and the SUPERMAN promoter. These SunTag systems represent valuable tools for the site-specific manipulation of plant epigenomes.
Ultrathin Co9S8 nanosheets vertically aligned on N,S/rGO for low voltage electrolytic water in alkaline media
Authors: Liu Huan , Xu Cheng-Yan , Du Yue , Ma Fei-Xiang , Li Yue , Yu Jing , Zhen Liang 
Published: February 2019

AbstractDevelopment of hydrogen as clean and efficient energy carrier for future is imperative. Water electrolysis, is considered as one of the most promising ways to realize large-scaled hydrogen production. However, a big obstacle of it is to reduce the electric energy consumption for water oxidation in the anode. Engineering of hierarchical architectures on the electrocatalysts could provide abundant active sites and thus boost the sluggish reaction kinetics of water oxidation. Herein, a sequential synthesis method is developed forin-situgrowth of ultrathin Co9S8nanosheets vertically aligned on N and S co-doped reduced graphene oxide (Co9S8/N,S-rGO) as novel and efficient electrocatalysts for water splitting. This architecture with vertically aligned ultrathin Co9S8nanosheets on N,S/rGO is adopted to facilitate the electron transport and exposure of active sites. Benefiting from the synergetic catalysis between Co9S8nanosheets and N,S/rGO, Co9S8/N,S-rGO presents remarkable electrocatalytic activity towards oxygen evolution with a low overpotential (266 mV to achieve current density of 10 mA cm−2), small Tafel slope of 75.5 mV dec−1, and good durability in alkaline medium. This remarkable OER electrocatalytic activity is outperforms most of the known noble-metal-free electrocatalysts.
A mixed vertebrate eggshell assemblage from the Transylvanian Late Cretaceous
Authors: Fernández Mariela Soledad , Wang Xia , Vremir Mátyás , Laurent Chris , Naish Darren , Kaiser Gary , Dyke Gareth 
Published: February 2019

AbstractA Late Cretaceous-aged multi-taxon nesting site from Romania preserved in three dimensions reveals the earliest example of nest site sharing yet known from the vertebrate fossil record. Eggshell and osteological evidence combined in this single accumulation demonstrate that at least four vertebrate taxa including enantiornithine birds and another avian of indeterminate affinities as well as crocodylomorphs and gekkotan squamates nested together in the same place. Colonial nesting in enantiornithines was previously described from this site; here, we present the first fossil evidence that other vertebrates also nested in the same place, perhaps exploiting the presence of the large bird colony. We describe four distinct eggshell morphotypes that have been collected from this site and draw palaeoecological inferences based on this unique multi-taxon nesting association.
Photo-polymerization as a new approach to fabricate the active layer of forward osmosis membrane
Authors: Pardeshi Pankaj M. , Mungray Alka A. 
Published: February 2019

AbstractA novel approach is employed to prepare the active layer of the forward osmosis membrane by the photo-polymerization method. The poly (ethylene glycol) phenyl ether acrylate (PPEA) and methacrylic acid (MAA) are used as monomers. The emphasis is given to analysing the effect of monomer concentration on chemical functional groups of active layer, thermal stability, surface morphology, roughness, interfacial free energy, organic fouling tendency and osmotic flux performance. The functional groups of the active layer are characterized by ATR-FTIR. Furthermore, thermal analysis (TGA/DTG) is performed to calculate grafting density and thermal stability of prepared FO membranes. Surface morphology and roughness are characterized by atomic force microscopy (AFM). Unlike control polyamide active layer membrane that suffered from organic fouling (28.14 ± 3.70% flux decline and 95% flux recovery), the photo-polymerized 75/25 active layer FO membrane demonstrated the low fouling propensity (2.77 ± 0.62% flux decline) and high flux recovery (nearly ~100%). The interfacial free energy and low fouling property of 75/25 FO membrane is also reflected in improved osmotic flux performance with 11.20 ± 0.79 L/g (AL-FS) and 8.41 ± 0.22 L/g (AL-DS) reverse solute flux selectivity (RSFS) (Jw/Js) than control polyamide FO membrane (7.94 ± 0.22 L/g (AL-FS) and 7.64 ± 0.54 L/g (AL-DS)).
Sodium current inhibition following stimulation of exchange protein directly activated by cyclic-3′,5′-adenosine monophosphate (Epac) in murine skeletal muscle
Authors: Matthews Hugh R. , Tan Sapphire R. X. , Shoesmith Jonathan A. , Ahmad Shiraz , Valli Haseeb , Jeevaratnam Kamalan , Huang Christopher L.-H. 
Published: February 2019

AbstractWe investigated effects of pharmacological triggering of exchange protein directly activated by cyclic-3′,5′-adenosine monophosphate (Epac) on Nav1.4 currents from intact murine (C67BL6) skeletal muscle fibres for the first time. This employed a loose patch clamp technique which examined ionic currents in response to superimposed 10-ms V1 steps to varying degrees of depolarisation, followed by V2 steps to a fixed, +100 mV depolarisation relative to resting membrane potential following 40 mV hyperpolarising prepulses of 50 ms duration. The activation and inactivation properties of the resulting Na+ membrane current densities revealed reduced maximum currents and steepnesses in their voltage dependences after addition of the Epac activator 8-(4-chlorophenylthio)adenosine-3′,5′-cyclic monophosphate (1 µM) to the bathing Krebs-Henseleit solutions. Contrastingly, voltages at half-maximal current and timecourses of currents obtained in response to the V1 depolarising steps were unchanged. These effects were abolished by further addition of the RyR-inhibitor dantrolene (10 µM). In contrast, challenge by dantrolene alone left both currents and their parameters intact. These effects of Epac activation in inhibiting skeletal muscle, Nav1.4, currents, complement similar effects previously reported in the homologous Nav1.5 in murine cardiomyocytes. They are discussed in terms of a hypothesis implicating Epac actions in increasing RyR-mediated SR Ca2+ release resulting in a Ca2+-mediated inhibition of Nav1.4. The latter effect may form the basis for Ca2+-dependent Na+ channel dysregulation in SCN4A channelopathies associated with cold- and K+-aggravated myotonias.
Sex Difference in the Association between High-sensitivity C-reactive Protein and Depression: The 2016 Korea National Health and Nutrition Examination Survey
Authors: Lee San , Oh Sarah Soyeon , Jang Sung-In , Park Eun-Cheol 
Published: February 2019

AbstractElevated levels of circulating high-sensitivity C-reactive protein (hs-CRP) have been observed in depression, with the body mass index (BMI) being a major mediator of this association. However, the sex difference in the association between hs-CRP and depression remains unclear. This study aimed to investigate the sex difference in the association between hs-CRP and depression. Data from the 2016 Korea National Health and Nutritional Examination Survey were used for our study. High hs-CRP was defined as >3.0 mg/L, while depression was determined using a cut-off score of 10 in the Patient Health Questionnaire-9. The study population comprised 5,483 Korean adults. Men with high hs-CRP levels showed statistically higher prevalence of depression than those with low hs-CRP levels (8.90% vs. 3.65%, P < 0.0001). The high hs-CRP group was 1.86 times more likely to have depression after adjusting for BMI and other covariates in men (adjusted odds ratio: 1.86; 95% confidence interval: 1.07–3.25; P = 0.029). Meanwhile, no statistically significant association between hs-CRP and depression was found among women. Depression was considerably associated with hs-CRP only in men, indicating a biological difference between men and women that can independently modify the relationship between hs-CRP and depression.
Clinical Potential of a New Approach to MRI Acceleration
Authors: Dispenza Nadine L. , Littin Sebastian , Zaitsev Maxim , Constable R. Todd , Galiana Gigi 
Published: February 2019

AbstractFast ROtary Nonlinear Spatial ACquisition (FRONSAC) was recently introduced as a new strategy that applies nonlinear gradients as a small perturbation to improve image quality in highly undersampled MRI. In addition to experimentally showing the previously simulated improvement to image quality, this work introduces the insight that Cartesian-FRONSAC retains many desirable features of Cartesian imaging. Cartesian-FRONSAC preserves the existing linear gradient waveforms of the Cartesian sequence while adding oscillating nonlinear gradient waveforms. Experiments show that performance is essentially identical to Cartesian imaging in terms of (1) resilience to experimental imperfections, like timing errors or off-resonance spins, (2) accommodating scan geometry changes without the need for recalibration or additional field mapping, (3) contrast generation, as in turbo spin echo. Despite these similarities to Cartesian imaging, which provides poor parallel imaging performance, Cartesian-FRONSAC consistently shows reduced undersampling artifacts and better response to advanced reconstruction techniques. A final experiment shows that hardware requirements are also flexible. Cartesian-FRONSAC improves accelerated imaging while retaining the robustness and flexibility critical to real clinical use.
The Spatial Patterns of Red Beds and Danxia Landforms: Implication for the formation factors–China
Authors: Yan Luobin , Peng Hua , Zhang Shaoyun , Zhang Ruoxi , Kašanin-Grubin Milica , Lin Kairong , Tu Xinjun 
Published: February 2019

AbstractThis research examined the distribution features of red beds and 1,100 Danxia landform sites across China, while probing the relationship between these spatial patterns and geological elements. This study is based on geological and tectonic maps of China. ArcGIS software was used to process the adjacent index, then perform a spatial analysis of Danxia landforms and red beds, and a coupling analysis of Danxia landforms and red beds with tectonics. Based on a point pattern analysis of Danxia landforms, the adjacent index is 0.31, and the coefficient of variation verified by Thiessen polygon reaches 449%. These figures reflect the clustered distribution pattern of the Danxia landforms. Across the country, Danxia landforms are concentrated into three areas, namely, the Southeast China region, the Sichuan Basin region and the Qilian-Liupan region. The exposure of red beds covers 9.16 × 105 km2, which accounts for 9.5% of the total land area of China. With this research background, the geological elements of tectonics and their effects on the distribution, number, and spatial pattern of Danxia landforms and red beds were analyzed.
DRUGPATH – a novel bioinformatic approach identifies DNA-damage pathway as a regulator of size maintenance in human ESCs and iPSCs
Authors: Kovacic Boris , Rosner Margit , Schlangen Karin , Kramer Nina , Hengstschläger Markus 
Published: February 2019

AbstractGenetic and biochemical screening approaches often fail to identify functionally relevant pathway networks because many signaling proteins contribute to multiple gene ontology pathways. We developed a DRUGPATH-approach to predict pathway-interactomes from high-content drug screen data. DRUGPATH is based upon combining z-scores of effective inhibitors with their corresponding and validated targets. We test DRUGPATH by comparing homeostatic pathways in human embryonic stem cells (hESCs), human induced pluripotent stem cells (hiPSCs) and human amniotic fluid stem cells (hAFSCs). We show that hAFSCs utilize distinct interactomes compared to hESCs/hiPSCs and that pathways orchestrating cell cycle and apoptosis are strongly interconnected, while pathways regulating survival and size are not. Interestingly, hESCs/hiPSCs regulate their size by growing exact additional sizes during each cell cycle. Chemical and genetic perturbation studies show that this “adder-model” is dependent on the DNA-damage pathway. In the future, the DRUGPATH-approach may help to predict novel pathway interactomes from high-content drug screens.
Biosynthetic investigation of γ-lactones in Sextonia rubra wood using in situ TOF-SIMS MS/MS imaging to localize and characterize biosynthetic intermediates
Authors: Fu Tingting , Houël Emeline , Amusant Nadine , Touboul David , Genta-Jouve Grégory , Della-Negra Serge , Fisher Gregory L. , Brunelle Alain , Duplais Christophe 
Published: February 2019

AbstractMolecular analysis by parallel tandem mass spectrometry (MS/MS) imaging contributes to the in situ characterization of biosynthetic intermediates which is crucial for deciphering the metabolic pathways in living organisms. We report the first use of TOF-SIMS MS/MS imaging for the cellular localization and characterization of biosynthetic intermediates of bioactive γ-lactones rubrynolide and rubrenolide in the Amazonian tree Sextonia rubra (Lauraceae). Five γ-lactones, including previously reported rubrynolide and rubrenolide, were isolated using a conventional approach and their structural characterization and localization at a lateral resolution of ~400 nm was later achieved using TOF-SIMS MS/MS imaging analysis. 2D/3D MS imaging at subcellular level reveals that putative biosynthetic γ-lactones intermediates are localized in the same cell types (ray parenchyma cells and oil cells) as rubrynolide and rubrenolide. Consequently, a revised metabolic pathway of rubrynolide was proposed, which involves the reaction between 2-hydroxysuccinic acid and 3-oxotetradecanoic acid, contrary to previous studies suggesting a single polyketide precursor. Our results provide insights into plant metabolite production in wood tissues and, overall, demonstrate that combining high spatial resolution TOF-SIMS imaging and MS/MS structural characterization offers new opportunities for studying molecular and cellular biochemistry in plants.
Chronic sleep restriction in the rotenone Parkinson’s disease model in rats reveals peripheral early-phase biomarkers
Authors: Fagotti Juliane , Targa Adriano D. S. , Rodrigues Lais S. , Noseda Ana Carolina D. , Dorieux Flávia W. C. , Scarante Franciele F. , Ilkiw Jessica L. , Louzada Fernando M. , Chowdhury Namrata R. , van der Veen Daan R. , Middleton Benita , Pennings Jeroen L. A. , Swann Jonathan R. , Skene Debra J. , Lima Marcelo M. S. 
Published: February 2019

AbstractParkinson’s disease (PD) is a chronic disorder that presents a range of premotor signs, such as sleep disturbances and cognitive decline, which are key non-motor features of the disease. Increasing evidence of a possible association between sleep disruption and the neurodegenerative process suggests that sleep impairment could produce a detectable metabolic signature on the disease. In order to integrate neurocognitive and metabolic parameters, we performed untargeted and targeted metabolic profiling of the rotenone PD model in a chronic sleep restriction (SR) (6 h/day for 21 days) condition. We found that SR combined with PD altered several behavioural (reversal of locomotor activity impairment; cognitive impairment; delay of rest-activity rhythm) and metabolic parameters (branched-chain amino acids, tryptophan pathway, phenylalanine, and lipoproteins, pointing to mitochondrial impairment). If combined, our results bring a plethora of parameters that represents reliable early-phase PD biomarkers which can easily be measured and could be translated to human studies.
Fungal spore involvement in the resuspension of radiocaesium in summer
Authors: Igarashi Yasuhito , Kita Kazuyuki , Maki Teruya , Kinase Takeshi , Hayashi Naho , Hosaka Kentaro , Adachi Kouji , Kajino Mizuo , Ishizuka Masahide , Sekiyama Tsuyoshi Thomas , Zaizen Yuji , Takenaka Chisato , Ninomiya Kazuhiko , Okochi Hiroshi , Sorimachi Atsuyuki 
Published: February 2019

AbstractWe observed the atmospheric resuspension of radiocaesium, derived from the Fukushima Dai-ichi Nuclear Power Plant accident, at Namie, a heavily contaminated area of Fukushima, since 2012. During the survey periods from 2012 to 2015, the activity concentrations of radiocaesium in air ranged from approximately 10−5 to 10−2 Bq per m3 and were higher in the warm season than in the cold season. Electron microscopy showed that the particles collected on filters in summer were predominantly of biological origin (bioaerosols), with which the observed radiocaesium activity concentration varied. We conducted an additional aerosol analysis based on fluorescent optical microscopic observation and high-throughput DNA sequencing technique to identify bioaerosols at Namie in 2015 summer. The concentrations of bioaerosols fluctuated the order of 106 particles per m3, and the phyla Basidiomycota and Ascomycota (true Fungi) accounted for approximately two-thirds of the bioaerosols. Moreover, the fungal spore concentration in air was positively correlated with the radiocaesium concentration at Namie in summer 2016. The bioaerosol emissions from Japanese mixed forests in the temperate zone predominately included fungal cells, which are known to accumulate radiocaesium, and should be considered an important scientific issue that must be addressed.
Belief of agency changes dynamics in sensorimotor networks
Authors: Buchholz Verena N. , David Nicole , Sengelmann Malte , Engel Andreas K. 
Published: February 2019

AbstractControlling an event through one’s own action usually induces a sense of agency, a feeling that arises when an expected outcome matches the intention. The neural correlates of this feeling remain controversial however, as experimental manipulation of the action-outcome chain often introduces mismatch or prediction errors that strongly correlate with the sense of agency. Here, we took a different approach and manipulated the causal belief (self-attribution vs. computer-attribution) by external cues during matched visuo-motor tapping conditions. With magneto-encephalography, we studied the sense of agency from a network perspective, investigating in source space the modulation of local population activity and changes in functional connectivity with motor cortex. Our results show that during the belief of agency primary motor cortex (M1) shows stronger functional connectivity (mediated by the beta band) to inferior parietal lobe and right middle temporal gyrus (MTG). Furthermore, the local feed-forward activity (gamma band power) in extrastriate body area and MTG disappears with that belief. After changes in action context, left M1 shows stronger connectivity in the alpha band with right premotor cortex and left insular-temporal cortex a network that might support active inference in social action context. Finally, a better tapping performance in this rhythmic task was related to alpha power modulations in the bilateral cerebellum and bilateral fusiform body-area, with power suppression during a more precise performance. These findings highlight the role of multiple networks supporting the sense of agency by changing their relative contribution for different causal beliefs.
Antitumor potential of new low molecular weight antioxidative preparations from the white rot fungus Cerrena unicolor against human colon cancer cells
Authors: Matuszewska Anna , Stefaniuk Dawid , Jaszek Magdalena , Pięt Mateusz , Zając Adrian , Matuszewski Łukasz , Cios Iga , Grąz Marcin , Paduch Roman , Bancerz Renata 
Published: February 2019

AbstractThe aim of this study was to investigate the anticancer and antioxidant activities of low molecular weight subfractions isolated from secondary metabolites produced by the wood degrading fungus Cerrena unicolor. Human colon cancer cells (stage I) HT-29 and human normal colon epithelial cells CCD 841 CoTr were used in the research. The present study demonstrated that the low molecular weight subfractions exhibited inhibitory activity towards human colon cancer cells HT-29 at a concentration range of 25–200 μg/mL. All 6 subfractions inhibited proliferation of cells down to 47.5–9.2% at the highest concentrations in a dose-dependent manner. The most desired activity was exhibited by subfractions S, 3, 4, and 5, as the proliferation of HT-29 cells was inhibited to the greatest extent (16.5, 47.5, 42.7, and 26.1% of the control, respectively), while the effect on CCD 841 CoTr cells was the mildest (inhibition to 54.4, 71.4, 79.4, and 53.4%, compared to the control, respectively). The microscopic observation revealed that all extracts induced programmed cell death, i.e. apoptosis (up to 44.4% (subfraction 6) towards HT-29 and less than 20% (most fractions) towards CCD 841 CoTr), with no or a significantly low level of necrosis in both cell lines at the same time.
Spin-momentum locked spin manipulation in a two-dimensional Rashba system
Authors: Kohda Makoto , Okayasu Takanori , Nitta Junsaku 
Published: February 2019

AbstractSpin-momentum locking, which constrains spin orientation perpendicular to electron momentum, is attracting considerable interest for exploring various spin functionalities in semiconductors and topological materials. Efficient spin generation and spin detection have been demonstrated using the induced helical spin texture. Nevertheless, spin manipulation by spin-momentum locking remains a missing piece because, once bias voltage is applied to induce the current flow, the spin orientation must be locked by the electron momentum direction, thereby rendering spin phase control difficult. Herein, we demonstrate the spin-momentum locking-induced spin manipulation for ballistic electrons in a strong Rashba two-dimensional system. Electron spin rotates in a circular orbital motion for ballistically moving electrons, although spin orientation is locked towards the spin-orbit field because of the helical spin texture. This fact demonstrates spin manipulation by control of the electron orbital motion and reveals potential effects of the orbital degree of freedom on the spin phase for future spintronic and topological devices and for the processing of quantum information.