bluuebunny/crossref_metadata_2025_split huggingface dataset:
How social relationships shape moral wrongness judgments
Authors: Earp Brian D. , McLoughlin Killian L. , Monrad Joshua T. , Clark Margaret S. , Crockett Molly J. 
Published: October 2021

AbstractJudgments of whether an action is morally wrong depend on who is involved and the nature of their relationship. But how, when, and why social relationships shape moral judgments is not well understood. We provide evidence to address these questions, measuring cooperative expectations and moral wrongness judgments in the context of common social relationships such as romantic partners, housemates, and siblings. In a pre-registered study of 423 U.S. participants nationally representative for age, race, and gender, we show that people normatively expect different relationships to serve cooperative functions of care, hierarchy, reciprocity, and mating to varying degrees. In a second pre-registered study of 1,320 U.S. participants, these relationship-specific cooperative expectations (i.e., relational norms) enable highly precise out-of-sample predictions about the perceived moral wrongness of actions in the context of particular relationships. In this work, we show that this ‘relational norms’ model better predicts patterns of moral wrongness judgments across relationships than alternative models based on genetic relatedness, social closeness, or interdependence, demonstrating how the perceived morality of actions depends not only on the actions themselves, but also on the relational context in which those actions occur.
Intrathymic differentiation of natural antibody-producing plasma cells in human neonates
Authors: Cordero Hector , King Rodney G. , Dogra Pranay , Dufeu Chloe , See Sarah B. , Chong Alexander M. , Uhlemann Anne-Catrin , Ho Siu-Hong , Kalfa David M. , Bacha Emile A. , Kearney John F. , Zorn Emmanuel 
Published: October 2021

AbstractThe thymus is a central lymphoid organ primarily responsible for the development of T cells. A small proportion of B cells, however, also reside in the thymus to assist negative selection of self-reactive T cells. Here we show that the thymus of human neonates contains a consistent contingent of CD138+ plasma cells, producing all classes and subclasses of immunoglobulins with the exception of IgD. These antibody-secreting cells are part of a larger subset of B cells that share the expression of signature genes defining mouse B1 cells, yet lack the expression of complement receptors CD21 and CD35. Data from single-cell transcriptomic, clonal correspondence and in vitro differentiation assays support the notion of intrathymic CD138+ plasma cell differentiation, alongside other B cell subsets with distinctive molecular phenotypes. Lastly, neonatal thymic plasma cells also include clones reactive to commensal and pathogenic bacteria that commonly infect children born with antibody deficiency. Thus, our findings point to the thymus as a source of innate humoral immunity in human neonates.
Ultra-coherent nanomechanical resonators based on inverse design
Authors: Høj Dennis , Wang Fengwen , Gao Wenjun , Hoff Ulrich Busk , Sigmund Ole , Andersen Ulrik Lund 
Published: October 2021

AbstractEngineered micro- and nanomechanical resonators with ultra-low dissipation constitute a promising platform for various quantum technologies and foundational research. Traditionally, the improvement of the resonator’s performance through nanomechanical structural engineering has been driven by human intuition and insight. Such an approach is inefficient and leaves aside a plethora of unexplored mechanical designs that potentially achieve better performance. Here, we use a computer-aided inverse design approach known as topology optimization to structurally design mechanical resonators with optimized performance of the fundamental mechanical mode. Using the outcomes of this approach, we fabricate and characterize ultra-coherent nanomechanical resonators with, to the best of our knowledge, record-high Q ⋅ f products for their fundamental mode (where Q is the quality factor and f is the frequency). The proposed approach - which can also be used to improve phononic crystals and coupled-mode resonators - opens up a new paradigm for designing ultra-coherent micro- and nanomechanical resonators, enabling e.g. novel experiments in fundamental physics and extreme sensing.
Experimental evidence of plasmarons and effective fine structure constant in electron-doped graphene/h-BN heterostructure
Authors: Zhang Hongyun , Wang Shuopei , Wang Eryin , Lu Xiaobo , Li Qian , Bao Changhua , Deng Ke , Zhang Haoxiong , Yao Wei , Chen Guorui , Fedorov Alexei V. , Denlinger Jonathan D. , Watanabe Kenji , Taniguchi Takashi , Zhang Guangyu , Zhou Shuyun 
Published: October 2021

AbstractElectron-electron interaction is fundamental in condensed matter physics and can lead to composite quasiparticles called plasmarons, which strongly renormalize the dispersion and carry information of electron-electron coupling strength as defined by the effective fine structure constant $${\alpha }_{ee}^{* }$$

α

e
e

*

. Although h-BN with unique dielectric properties has been widely used as an important substrate for graphene, so far there is no experimental report of plasmarons in graphene/h-BN yet. Here, we report direct experimental observation of plasmaron dispersion in graphene/h-BN heterostructures through angle-resolved photoemission spectroscopy (ARPES) measurements upon in situ electron doping. Characteristic diamond-shaped dispersion is observed near the Dirac cone in both 0° (aligned) and 13.5° (twisted) graphene/h-BN, and the electron-electron interaction strength $${\alpha }_{ee}^{* }$$

α

e
e

*

is extracted to be $${\alpha }_{ee}^{* }\approx 0.9\pm 0.1$$

α

e
e

*

≈
0.9
±
0.1

, highlighting the important role of electron-electron interaction. Our results suggest graphene/h-BN as an ideal platform for investigating strong electron-electron interaction with weak dielectric screening, and lays fundamental physics for gate-tunable nano-electronics and nano-plasmonics.
The Simrad EK60 echosounder dataset from the Malaspina circumnavigation
Authors: Irigoien Xabier , Klevjer Thor , Martinez Udane , Boyra Guillermo , Røstad Anders , Wittmann Astrid C. , Duarte Carlos M. , Kaartvedt Stein , Brierley Andrew S. , Proud Roland 
Published: October 2021

AbstractWe provide the raw acoustic data collected from the R/V Hesperides during the global Malaspina 2010 Spanish Circumnavigation Expedition (14th December 2010, Cádiz-14th July 2011, Cartagena) using a Simrad EK60 scientific echosounder operating at 38 and 120 kHz. The cruise was divided into seven legs: leg 1 (14th December 2010, Cádiz-13th January 2011, Rio de Janeiro), leg 2 (17th January 2011, Rio de Janeiro-6th February 2011, Cape Town), leg 3 (11th February 2011, Cape Town-13th March 2011, Perth), leg 4 (17th March 2011, Perth-30th March 2011, Sydney), leg 5 (16th April 2011, Auckland-8th May 2011, Honolulu), leg 6 (13th May 2011, Honolulu-10th June 2011, Cartagena de Indias) and leg 7 (19th June 2011, Cartagena de Indias-14th July 2011, Cartagena). The echosounder was calibrated at the start of the expedition and calibration parameters were updated in the data acquisition software (ER60) i.e., the logged raw data are calibrated. We also provide a data summary of the acoustic data in the form of post-processed products.
Trimethylamine functionalized radiation-induced grafted polyamide 6 fibers for p-nitrophenol adsorption
Authors: M.Saber Shihab Ezzuldin , Abdullah Luqman Chuah , Jamil Siti Nurul Ain Md. , Choong Thomas S. Y. , Ting Teo Ming 
Published: October 2021

AbstractThe method of pre-irradiation grafting was used with the aid of electron beam (EB) accelerator to accomplish the grafting of polyamide 6 fibers (PA6) with glycidyl methacrylate (GMA). The extent to which GMA was grafted on PA6 was found to be markedly influenced by the absorbed dose of radiation and the reaction time of grafting. Trimethylamine (TMA) was afterwards employed for the functionalization of GMA-grafted fibers (PA6-g-GMA). A range of analyses (e.g., FTIR, FESEM, XRD, BET, and pHpzc) were carried out to determine the physiochemical and morphological properties of the fibrous adsorbent. p-Nitrophenol (PNP) adsorption from aqueous solution was conducted with the resulting TMA-(PA6-g-GMA) adsorbent. The adsorption behaviour of PNP on the fibrous adsorbent was clarified by investigating the adsorption kinetics and isotherm. According to the results, the adsorption of PNP on TMA-(PA6-g-GMA) reflected the pseudo-second order model. Meanwhile, the isotherm analysis revealed that the best description of the equilibrium data was provided by Redlich–Peterson model, followed closely by Langmuir isotherm model. The achieved adsorption capacity was highest at 176.036 mg/g. Moreover, the adsorption was indicated by the thermodynamic analysis to be spontaneous and exothermic. Regeneration and recycling of the adsorbent was possible for a minimum of five cycles with no reduction in adsorption capacity. It was concluded that the fibrous adsorbent could have applications for the removal of PNP at industrial pilot scale.
Acute kidney injury detection using refined and physiological-feature augmented urine output
Authors: Alkhairy Sahar , Celi Leo A. , Feng Mengling , Zimolzak Andrew J. 
Published: October 2021

AbstractAcute kidney injury (AKI) is common in the intensive care unit, where it is associated with increased mortality. AKI is often defined using creatinine and urine output criteria. The creatinine-based definition is more reliable but less expedient, whereas the urine output based definition is rapid but less reliable. Our goal is to examine the urine output criterion and augment it with physiological features for better agreement with creatinine-based definitions of AKI. The objectives are threefold: (1) to characterize the baseline agreement of urine output and creatinine definitions of AKI; (2) to refine the urine output criteria to identify the thresholds that best agree with the creatinine-based definition; and (3) to build generalized estimating equation (GEE) and generalized linear mixed-effects (GLME) models with static and time-varying features to improve the accuracy of a near-real-time marker for AKI. We performed a retrospective observational study using data from two independent critical care databases, MIMIC-III and eICU, for critically ill patients who developed AKI in intensive care units. We found that the conventional urine output criterion (6 hr, 0.5 ml/kg/h) has specificity and sensitivity of 0.49 and 0.54 for MIMIC-III database; and specificity and sensitivity of 0.38 and 0.56 for eICU. Secondly, urine output thresholds of 12 hours and 0.6 ml/kg/h have specificity and sensitivity of 0.58 and 0.48 for MIMIC-III; and urine output thresholds of 10 hours and 0.6 ml/kg/h have specificity and sensitivity of 0.49 and 0.48 for eICU. Thirdly, the GEE model of four hours duration augmented with static and time-varying features can achieve a specificity and sensitivity of 0.66 and 0.61 for MIMIC-III; and specificity and sensitivity of 0.66 and 0.64 for eICU. The GLME model of four hours duration augmented with static and time-varying features can achieve a specificity and sensitivity of 0.71 and 0.55 for MIMIC-III; and specificity and sensitivity of 0.66 and 0.60 for eICU. The GEE model has greater performance than the GLME model, however, the GLME model is more reflective of the variables as fixed effects or random effects. The significant improvement in performance, relative to current definitions, when augmenting with patient features, suggest the need of incorporating these features when detecting disease onset and modeling at window-level rather than patient-level.
Spatiotemporal expression of IgLON family members in the developing mouse nervous system
Authors: Fearnley Sydney , Raja Reesha , Cloutier Jean-François 
Published: October 2021

AbstractDifferential expression of cell adhesion molecules in neuronal populations is one of the many mechanisms promoting the formation of functional neural circuits in the developing nervous system. The IgLON family consists of five cell surface immunoglobulin proteins that have been associated with various developmental disorders, such as autism spectrum disorder, schizophrenia, and major depressive disorder. However, there is still limited and fragmented information about their patterns of expression in certain regions of the developing nervous system and how their expression contributes to their function. Utilizing an in situ hybridization approach, we have analyzed the spatiotemporal expression of all IgLON family members in the developing mouse brain, spinal cord, eye, olfactory epithelium, and vomeronasal organ. At one prenatal (E16) and two postnatal (P0 and P15) ages, we show that each IgLON displays distinct expression patterns in the olfactory system, cerebral cortex, midbrain, cerebellum, spinal cord, and eye, indicating that they likely contribute to the wiring of specific neuronal circuitry. These analyses will inform future functional studies aimed at identifying additional roles for these proteins in nervous system development.
A broad comparative genomics approach to understanding the pathogenicity of Complex I mutations
Authors: Klink Galya V. , O’Keefe Hannah , Gogna Amrita , Bazykin Georgii A. , Elson Joanna L. 
Published: October 2021

AbstractDisease caused by mutations of mitochondrial DNA (mtDNA) are highly variable in both presentation and penetrance. Over the last 30 years, clinical recognition of this group of diseases has increased. It has been suggested that haplogroup background could influence the penetrance and presentation of disease-causing mutations; however, to date there is only one well-established example of such an effect: the increased penetrance of two Complex I Leber's hereditary optic neuropathy mutations on a haplogroup J background. This paper conducts the most extensive investigation to date into the importance of haplogroup context in the pathogenicity of mtDNA mutations in Complex I. We searched for proven human point mutations across more than 900 metazoans finding human disease-causing mutations and potential masking variants. We found more than a half of human pathogenic variants as compensated pathogenic deviations (CPD) in at least in one animal species from our multiple sequence alignments. Some variants were found in many species, and some were even the most prevalent amino acids across our dataset. Variants were also found in other primates, and in such cases, we looked for non-human amino acids in sites with high probability to interact with the CPD in folded protein. Using this “local interactions” approach allowed us to find potential masking substitutions in other amino acid sites. We suggest that the masking variants might arise in humans, resulting in variability of mutation effect in our species.
Carbon-nanotube yarns induce axonal regeneration in peripheral nerve defect
Authors: Kunisaki Atsushi , Kodama Akira , Ishikawa Masakazu , Ueda Takahiro , Lima Marcio D. , Kondo Takeshi , Adachi Nobuo 
Published: October 2021

AbstractCarbon nanotubes (CNTs) are cylindrical nanostructures and have unique properties, including flexibility, electrical conductivity, and biocompatibility. We focused on CNTs fabricated with the carbon nanotube yarns (cYarn) as a possible substrate promoting peripheral nerve regeneration with these properties. We bridged a 15 mm rat sciatic nerve defect with five different densities of cYarn. Eight weeks after the surgery, the regenerated axons crossing the CNTs, electromyographical findings, and muscle weight ratio of the lower leg showed recovery of the nerve function by interfacing with cYarn. Furthermore, the sciatic nerve functional index (SFI) at 16 weeks showed improvement in gait function. A 2% CNT density tended to be the most effective for nerve regeneration as measured by both histological axonal regeneration and motor function. We confirmed that CNT yarn promotes peripheral nerve regeneration by using it as a scaffold for repairing nerve defects. Our results support the future clinical application of CNTs for bridging nerve defects as an off-the-shelf material.
A vascularized tumoroid model for human glioblastoma angiogenesis
Authors: Tatla Agavi Stavropoulou , Justin Alexander W. , Watts Colin , Markaki Athina E. 
Published: October 2021

AbstractGlioblastoma (GBM) angiogenesis is critical for tumor growth and recurrence, making it a compelling therapeutic target. Here, a disease-relevant, vascularized tumoroid in vitro model with stem-like features and stromal surrounds is reported. The model is used to recapitulate how individual components of the GBM’s complex brain microenvironment such as hypoxia, vasculature-related stromal cells and growth factors support GBM angiogenesis. It is scalable, tractable, cost-effective and can be used with biologically-derived or biomimetic matrices. Patient-derived primary GBM cells are found to closely participate in blood vessel formation in contrast to a GBM cell line containing differentiated cells. Exogenous growth factors amplify this effect under normoxia but not at hypoxia suggesting that a significant amount of growth factors is already being produced under hypoxic conditions. Under hypoxia, primary GBM cells strongly co-localize with umbilical vein endothelial cells to form sprouting vascular networks, which has been reported to occur in vivo. These findings demonstrate that our 3D tumoroid in vitro model exhibits biomimetic attributes that may permit its use as a preclinical model in studying microenvironment cues of tumor angiogenesis.
Finite element simulations of hybrid nano-Carreau Yasuda fluid with hall and ion slip forces over rotating heated porous cone
Authors: Nazir Umar , Sohail Muhammad , Selim Mahmoud M. , Alrabaiah Hussam , Kumam Poom 
Published: October 2021

AbstractInvolvement of hybrid nanoparticles a vital role to improve the efficiency of thermal systems. This report covers the utilization of different nanoparticles mixed in Carreau Yasuda material for the improvement of thermal performance. The configuration of flow situation is considered over a rotating porous cone by considering the Hall and Ion slip forces. Transport of momentum is considered to be in a rotating cone under generalized ohm’s law and heat transfer is presented by considering viscous dissipation, Joule heating and heat generation. Rheology of considered model is derived by engaging the theory proposed by Prandtl. Modeled complex PDEs are reduced into ODEs under similarity transformation. To study the physics behind this phenomenon, solution is essential. Here, FEM (Finite Element Method) is adopted to compute the solution. Furthermore, the grid independent study is reported with several graphs and tables which are prepared to note the influence of involved parameters on thermal and velocity fields. It is worth mentioning that heat transport is controlled via higher radiation parameter and it upsurges for Eckert number. Moreover, Hall and ion slip parameters are considered significant parameters to produce the enhancement in motion of fluid particles but speed of nano and hybrid nanoparticles becomes slow down versus large values of Forchheimer and Weissenberg numbers. Additionally, an enhancement in production of heat energy is addressed via large values of heat generation number and Eckert number while reduction in heat energy is occurred due to positive values of thermal radiation and Hall and ion slip parameters.
The congenital popliteal vasculature patterns in fibular free flap reconstruction by means of surgical anatomy in cadavers
Authors: Ongsiriporn Mathee , Jongpradubgiat Piyawadee , Pisittrakoonporn Sasiprapa , Kongkunnavat Natthapong , Panyaatisin Kosin , Yodrabum Nutcha 
Published: October 2021

AbstractFibular free flap (FFF) is frequently used for reconstruction requiring vascularized bone. Thus, understanding its vasculature variation is crucial. This study investigates the popliteal artery branching variations in Thai cadavers and compares them with previous studies. One hundred and sixty-two legs from 81 formalin-embalmed cadavers were dissected. The popliteal artery branching patterns were classified. The previous data retrieved from cadaveric and angiographic studies were also collected and compared with the current study. The most common pattern is type I-A (90.7%). For the variants, type III-A was the majority among variants (6.2%). Type IV-A, hypoplastic peroneal artery, was found in one limb. A symmetrical branching pattern was found in 74 cadavers. Compared with cadaveric studies, type III-B and III-C are significantly common in angiographic studies (p = 0.015 and p = 0.009, respectively). Type I-A is most common according to previous studies. Apart from this, the prevalence of type III-A variant was higher than in previous studies. Furthermore, type III-B and III-C are more frequent in angiographic studies which might be from atherosclerosis. Thus, if the pre-operative CTA policy is not mandatory, the patients at risk for atherosclerosis and population with high variants prevalence should undergo pre-operative CTA with cost-effectiveness consideration.
High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana
Authors: Hou Zhimin , Liu Yanhui , Zhang Man , Zhao Lihua , Jin Xingyue , Liu Liping , Su Zhenxia , Cai Hanyang , Qin Yuan 
Published: October 2021

AbstractFemale germline cells in flowering plants differentiate from somatic cells to produce specialized reproductive organs, called ovules, embedded deep inside the flowers. We investigated the molecular basis of this distinctive developmental program by performing single-cell RNA sequencing (scRNA-seq) of 16,872 single cells of Arabidopsis thaliana ovule primordia at three developmental time points during female germline differentiation. This allowed us to identify the characteristic expression patterns of the main cell types, including the female germline and its surrounding nucellus. We then reconstructed the continuous trajectory of female germline differentiation and observed dynamic waves of gene expression along the developmental trajectory. A focused analysis revealed transcriptional cascades and identified key transcriptional factors that showed distinct expression patterns along the germline differentiation trajectory. Our study provides a valuable reference dataset of the transcriptional process during female germline differentiation at single-cell resolution, shedding light on the mechanisms underlying germline cell fate determination.
Large calcium isotope fractionations by zeolite minerals from Iceland
Authors: Nelson Claire J. , Jacobson Andrew D. , Kitch Gabriella D. , Weisenberger Tobias B. 
Published: October 2021

AbstractZeolites are secondary tectosilicates produced during the hydrothermal alteration of basalt. The minerals serve as major sinks of calcium, which readily exchanges with calcium from surrounding groundwater. However, no studies have specifically investigated the calcium isotope geochemistry (δ44/40Ca) of zeolites. Here, we report δ44/40Ca values for zeolites from East Iceland, where the minerals form during progressive burial of the lava pile. The zeolites show a δ44/40Ca range of 1.4‰, which strongly correlates with average mineral calcium-oxygen bond lengths. As this correlation appears most consistent with equilibrium isotope partitioning, our findings point toward developing a novel geothermometer for studying low-grade basalt metamorphism. The results also have significance for using calcium isotopes to trace basalt weathering, including its role in long-term climate regulation and application in carbon capture and storage, a leading strategy for mitigating anthropogenic climate change.