bluuebunny/crossref_metadata_2025_split huggingface dataset:
Interactions between ants and non-myrmecochorous diaspores in a West African montane landscape
Authors: Agaldo Jennifer A. , Christianini Alexander V. , Chapman Hazel M. 
Published: April 2021

AbstractMyrmecochory, the dispersal of seeds with lipid-rich appendages by ants, is a significant ant–plant interaction. Less well understood is the potential for ant dispersal of non-myrmecochorous seeds. Here we investigate ant–diaspore interactions in a West African montane habitat. We combine observation with depot experiments to determine ant species that move diaspores and distance moved across a forest-edge-grassland gradient. We recorded seed cleaning by ants using a bird/mammal dispersed Paullinia pinnata to determine whether seed cleaning improved plant fitness. We found that two out of a total of 17 ant species (Pheidole sp. 1 and Myrmicaria opaciventris) interacted with 10 species of non-myrmecochorous diaspores across nine plant families. Diaspores were from large canopy trees, understorey trees and vines. Both ant species interacted with small (≤0.24 g) and large (≥0.24 g) diaspores. Ants individually moved small diaspores up to 1.2 m and worked together to clean larger ones. Our experiments with P. pinnata showed that ants removed the pulp of 70% of fruit over 5 days. Cleaned seeds germinated significantly faster and produced seedlings with significantly longer shoot length and higher fresh weight than seedlings from intact seeds. Together our results suggest that ant dispersal may be less significant than seed cleaning in Afromontane forests. However, given the decline in vertebrate frugivores across Africa, a small dispersal advantage may become increasingly important to plant fitness.
Accuracy development in L2 writing: Exploring the potential of computer-assisted unfocused indirect corrective feedback in an online EFL course
Authors: Brudermann Cédric , Grosbois Muriel , Sarré Cédric 
Published: April 2021

AbstractIn a previous study (Sarré, Grosbois & Brudermann, 2019), we explored the effects of various corrective feedback (CF) strategies on interlanguage development for the online component of a blended English as a foreign language (EFL) course we had designed and implemented. Our results showed that unfocused indirect CF (feedback on all error types through the provision of metalinguistic comments on the nature of the errors made) combined with extra computer-mediated micro-tasks was the most efficient CF type to foster writing accuracy development in our context. Following up on this study, this paper further explores the effects of this specific CF type on learners’ written accuracy development in an online EFL course designed for freshmen STEM (science, technology, engineering, and mathematics) students. In the online course under study, this specific CF type was experimented with different cohorts of STEM learners (N= 1,150) over a five-year period (from 2014 to 2019) and was computer-assisted: CF provision online by a human tutor was combined with predetermined CF comments. The aim of this paper is to investigate the impact of this specific CF strategy on error types. In this respect, the data yield encouraging results in terms of writing accuracy development when learners benefit from this computer-assisted specific CF. This study thus helps to gain a better understanding of the role that CF plays in shaping students’ revision processes and could inform language (teacher) education regarding the use of digital tools for the development of foreign language accuracy and the issues related to online CF provision.
Identification of therapeutic targets of the hijacked super-enhancer complex in EVI1-rearranged leukemia
Authors: Kiehlmeier Sandra , Rafiee Mahmoud-Reza , Bakr Ali , Mika Jagoda , Kruse Sabrina , Müller Judith , Schweiggert Sabrina , Herrmann Carl , Sigismondo Gianluca , Schmezer Peter , Krijgsveld Jeroen , Gröschel Stefan 
Published: April 2021

AbstractDeregulation of the EVI1 proto-oncogene by the GATA2 distal hematopoietic enhancer (G2DHE) is a key event in high-risk acute myeloid leukemia carrying 3q21q26 aberrations (3q-AML). Upon chromosomal rearrangement, G2DHE acquires characteristics of a super-enhancer and causes overexpression of EVI1 at 3q26.2. However, the transcription factor (TF) complex of G2DHE remains poorly characterized. The aim of this study was to unravel key components of G2DHE-bound TFs involved in the deregulation of EVI1. We have identified several CEBPA and RUNX1 binding sites to be enriched and critical for G2DHE function in 3q-AML cells. Using ChIP-SICAP (ChIP followed by selective isolation of chromatin-associated proteins), a panel of chromatin interactors of RUNX1 and CEBPA were detected in 3q-AML, including PARP1 and IKZF1. PARP1 inhibition (PARPi) caused a reduction of EVI1 expression and a decrease in EVI1–G2DHE interaction frequency, highlighting the involvement of PARP1 in oncogenic super-enhancer formation. Furthermore, 3q-AML cells were highly sensitive to PARPi and displayed morphological changes with higher rates of differentiation and apoptosis as well as depletion of CD34 + cells. In summary, integrative analysis of the 3q-AML super-enhancer complex identified CEBPA and RUNX1 associated proteins and nominated PARP1 as a potential new therapeutic target in EVI1 + 3q-AML.
Non-linear self-driven spectral tuning of Extreme Ultraviolet Femtosecond Pulses in monoatomic materials
Authors: Ferrante Carino , Principi Emiliano , Marini Andrea , Batignani Giovanni , Fumero Giuseppe , Virga Alessandra , Foglia Laura , Mincigrucci Riccardo , Simoncig Alberto , Spezzani Carlo , Masciovecchio Claudio , Scopigno Tullio 
Published: April 2021

AbstractSelf-action nonlinearity is a key aspect – either as a foundational element or a detrimental factor – of several optical spectroscopies and photonic devices. Supercontinuum generation, wavelength converters, and chirped pulse amplification are just a few examples. The recent advent of Free Electron Lasers (FEL) fostered building on nonlinearity to propose new concepts and extend optical wavelengths paradigms for extreme ultraviolet (EUV) and X-ray regimes. No evidence for intrapulse dynamics, however, has been reported at such short wavelengths, where the light-matter interactions are ruled by the sharp absorption edges of core electrons. Here, we provide experimental evidence for self-phase modulation of femtosecond FEL pulses, which we exploit for fine self-driven spectral tunability by interaction with sub-micrometric foils of selected monoatomic materials. Moving the pulse wavelength across the absorption edge, the spectral profile changes from a non-linear spectral blue-shift to a red-shifted broadening. These findings are rationalized accounting for ultrafast ionization and delayed thermal response of highly excited electrons above and below threshold, respectively.
Pro-inflammatory interleukin-6 signaling links cognitive impairments and peripheral metabolic alterations in Alzheimer’s disease
Authors: Lyra e Silva Natalia M. , Gonçalves Rafaella A. , Pascoal Tharick A. , Lima-Filho Ricardo A. S. , Resende Elisa de Paula França , Vieira Erica L. M. , Teixeira Antonio L. , de Souza Leonardo C. , Peny Julyanna A. , Fortuna Juliana T. S. , Furigo Isadora C. , Hashiguchi Debora , Miya-Coreixas Vivian S. , Clarke Julia R. , Abisambra Jose F. , Longo Beatriz M. , Donato Jose , Fraser Paul E. , Rosa-Neto Pedro , Caramelli Paulo , Ferreira Sergio T. , De Felice Fernanda G. 
Published: April 2021

AbstractAlzheimer’s disease (AD) is associated with memory impairment and altered peripheral metabolism. Mounting evidence indicates that abnormal signaling in a brain-periphery metabolic axis plays a role in AD pathophysiology. The activation of pro-inflammatory pathways in the brain, including the interleukin-6 (IL-6) pathway, comprises a potential point of convergence between memory dysfunction and metabolic alterations in AD that remains to be better explored. Using T2-weighted magnetic resonance imaging (MRI), we observed signs of probable inflammation in the hypothalamus and in the hippocampus of AD patients when compared to cognitively healthy control subjects. Pathological examination of post-mortem AD hypothalamus revealed the presence of hyperphosphorylated tau and tangle-like structures, as well as parenchymal and vascular amyloid deposits surrounded by astrocytes. T2 hyperintensities on MRI positively correlated with plasma IL-6, and both correlated inversely with cognitive performance and hypothalamic/hippocampal volumes in AD patients. Increased IL-6 and suppressor of cytokine signaling 3 (SOCS3) were observed in post-mortem AD brains. Moreover, activation of the IL-6 pathway was observed in the hypothalamus and hippocampus of AD mice. Neutralization of IL-6 and inhibition of the signal transducer and activator of transcription 3 (STAT3) signaling in the brains of AD mouse models alleviated memory impairment and peripheral glucose intolerance, and normalized plasma IL-6 levels. Collectively, these results point to IL-6 as a link between cognitive impairment and peripheral metabolic alterations in AD. Targeting pro-inflammatory IL-6 signaling may be a strategy to alleviate memory impairment and metabolic alterations in the disease.
Reductive evolution and unique predatory mode in the CPR bacterium Vampirococcus lugosii
Authors: Moreira David , Zivanovic Yvan , López-Archilla Ana I. , Iniesto Miguel , López-García Purificación 
Published: April 2021

AbstractThe Candidate Phyla Radiation (CPR) constitutes a large group of mostly uncultured bacterial lineages with small cell sizes and limited biosynthetic capabilities. They are thought to be symbionts of other organisms, but the nature of this symbiosis has been ascertained only for cultured Saccharibacteria, which are epibiotic parasites of other bacteria. Here, we study the biology and the genome of Vampirococcus lugosii, which becomes the first described species of Vampirococcus, a genus of epibiotic bacteria morphologically identified decades ago. Vampirococcus belongs to the CPR phylum Absconditabacteria. It feeds on anoxygenic photosynthetic gammaproteobacteria, fully absorbing their cytoplasmic content. The cells divide epibiotically, forming multicellular stalks whose apical cells can reach new hosts. The genome is small (1.3 Mbp) and highly reduced in biosynthetic metabolism genes, but is enriched in genes possibly related to a fibrous cell surface likely involved in interactions with the host. Gene loss has been continuous during the evolution of Absconditabacteria, and generally most CPR bacteria, but this has been compensated by gene acquisition by horizontal gene transfer and de novo evolution. Our findings support parasitism as a widespread lifestyle of CPR bacteria, which probably contribute to the control of bacterial populations in diverse ecosystems.
3D-printed self-healing hydrogels via Digital Light Processing
Authors: Caprioli Matteo , Roppolo Ignazio , Chiappone Annalisa , Larush Liraz , Pirri Candido Fabrizio , Magdassi Shlomo 
Published: April 2021

AbstractSelf-healing hydrogels may mimic the behavior of living tissues, which can autonomously repair minor damages, and therefore have a high potential for application in biomedicine. So far, such hydrogels have been processed only via extrusion-based additive manufacturing technology, limited in freedom of design and resolution. Herein, we present 3D-printed hydrogel with self-healing ability, fabricated using only commercially available materials and a commercial Digital Light Processing printer. These hydrogels are based on a semi-interpenetrated polymeric network, enabling self-repair of the printed objects. The autonomous restoration occurs rapidly, at room temperature, and without any external trigger. After rejoining, the samples can withstand deformation and recovered 72% of their initial strength after 12 hours. The proposed approach enables 3D printing of self-healing hydrogels objects with complex architecture, paving the way for future applications in diverse fields, ranging from soft robotics to energy storage.
Dynamics of collective action to conserve a large common-pool resource
Authors: Andersson David , Bratsberg Sigrid , Ringsmuth Andrew K. , de Wijn Astrid S. 
Published: April 2021

AbstractA pressing challenge for coming decades is sustainable and just management of large-scale common-pool resources including the atmosphere, biodiversity and public services. This poses a difficult collective action problem because such resources may not show signs that usage restraint is needed until tragedy is almost inevitable. To solve this problem, a sufficient level of cooperation with a pro-conservation behavioural norm must be achieved, within the prevailing sociopolitical environment, in time for the action taken to be effective. Here we investigate the transient dynamics of behavioural change in an agent-based model on structured networks that are also exposed to a global external influence. We find that polarisation emerges naturally, even without bounded confidence, but that for rationally motivated agents, it is temporary. The speed of convergence to a final consensus is controlled by the rate at which the polarised clusters are dissolved. This depends strongly on the combination of external influences and the network topology. Both high connectivity and a favourable environment are needed to rapidly obtain final consensus.
COSMAS: a lightweight toolbox for cardiac optical mapping analysis
Authors: Tomek Jakub , Wang Zhinuo Jenny , Burton Rebecca-Ann Beatrice , Herring Neil , Bub Gil 
Published: April 2021

AbstractOptical mapping is widely used in experimental cardiology, as it allows visualization of cardiac membrane potential and calcium transients. However, optical mapping measurements from a single heart or cell culture can produce several gigabytes of data, warranting automated computer analysis. Here we present COSMAS, a software toolkit for automated analysis of optical mapping recordings in cardiac preparations. COSMAS generates activation and conduction velocity maps, as well as visualizations of action potential and calcium transient duration, S1-S2 protocol analysis, and alternans mapping. The software is built around our recent ‘comb’ algorithm for segmentation of action potentials and calcium transients, offering excellent performance and high resistance to noise. A core feature of our software is that it is based on scripting as opposed to relying on a graphical user interface for user input. The central role of scripts in the analysis pipeline enables batch processing and promotes reproducibility and transparency in the interpretation of large cardiac data sets. Finally, the code is designed to be easily extended, allowing researchers to add functionality if needed. COSMAS is provided in two languages, Matlab and Python, and is distributed with a user guide and sample scripts, so that accessibility to researchers is maximized.
Resilience of vernacular and modernising dwellings in three climatic zones to climate change
Authors: Henna Khadeeja , Saifudeen Aysha , Mani Monto 
Published: April 2021

AbstractClimate change impacts buildings in multiple ways, including extreme weather events and thermal stresses. Rural India comprising 65% of the population is characterised by vernacular dwellings evolved over time to passively regulate and maintain comfortable indoors. Increasing modernization in rural habitations (transitions) evident from the ingress of modern materials and electro-mechanical appliances undermines the ability of building envelopes to passively regulate and maintain comfortable indoors. While such trends are deemed good for the economy, their underlying implications in terms of climate change have not been adequately examined. The current study evaluates the climate-resilience of vernacular dwellings and those undergoing transitions in response to three climate-change scenarios, viz, A1B (rapid economic growth fuelled by balanced use of energy sources), A2 (regionally sensitive economic development) and B1 (structured economic growth and adoption of clean and resource efficient technologies). The study examines dwellings characteristic to three rural settlements representing three major climate zones in India and involves both real-time monitoring and simulation-based investigation. The study is novel in investigating the impact of climate change on indoor thermal comfort in rural dwellings, adopting vernacular and modern materials. The study revealed higher resilience of vernacular dwellings in response to climate change.
Seasonal prevalence and characteristics of low-dose CT detected lung nodules in a general Dutch population
Authors: Lancaster Harriet L. , Heuvelmans Marjolein A. , Pelgrim Gert Jan , Rook Mieneke , Kok Marius G. J. , Aown Ahmed , de Bock Geertruida H. , van den Berge Maarten , Groen Harry J. M. , Vliegenthart Rozemarijn 
Published: April 2021

AbstractWe investigated whether presence and characteristics of lung nodules in the general population using low-dose computed tomography (LDCT) varied by season. Imaging in Lifelines (ImaLife) study participants who underwent chest LDCT-scanning between October 2018 and October 2019 were included in this sub-study. Hay fever season (summer) was defined as 1st April to 30th September and Influenza season (winter) as 1st October to 31st March. All lung nodules with volume of ≥ 30 mm3 (approximately 3 mm in diameter) were registered. In total, 2496 lung nodules were found in 1312 (38%) of the 3456 included participants (nodules per participant ranging from 1 to 21, median 1). In summer, 711 (54%) participants had 1 or more lung nodule(s) compared to 601 (46%) participants in winter (p = 0.002). Of the spherical, perifissural and left-upper-lobe nodules, relatively more were detected in winter, whereas of the polygonal-, irregular-shaped and centrally-calcified nodules, relatively more were detected in summer. Various seasonal diseases with inflammation as underlying pathophysiology may influence presence and characteristics of lung nodules. Further investigation into underlying pathophysiology using short-term LDCT follow-up could help optimize the management strategy for CT-detected lung nodules in clinical practice.
Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields
Authors: Medina-Cordoba Luz K. , Chande Aroon T. , Rishishwar Lavanya , Mayer Leonard W. , Valderrama-Aguirre Lina C. , Valderrama-Aguirre Augusto , Gaby John Christian , Kostka Joel E. , Jordan I. King 
Published: April 2021

AbstractPrevious studies have shown the sugarcane microbiome harbors diverse plant growth promoting microorganisms, including nitrogen-fixing bacteria (diazotrophs), which can serve as biofertilizers. The genomes of 22 diazotrophs from Colombian sugarcane fields were sequenced to investigate potential biofertilizers. A genome-enabled computational phenotyping approach was developed to prioritize sugarcane associated diazotrophs according to their potential as biofertilizers. This method selects isolates that have potential for nitrogen fixation and other plant growth promoting (PGP) phenotypes while showing low risk for virulence and antibiotic resistance. Intact nitrogenase (nif) genes and operons were found in 18 of the isolates. Isolates also encode phosphate solubilization and siderophore production operons, and other PGP genes. The majority of sugarcane isolates showed uniformly low predicted virulence and antibiotic resistance compared to clinical isolates. Six strains with the highest overall genotype scores were experimentally evaluated for nitrogen fixation, phosphate solubilization, and the production of siderophores, gibberellic acid, and indole acetic acid. Results from the biochemical assays were consistent and validated computational phenotype predictions. A genotypic and phenotypic threshold was observed that separated strains by their potential for PGP versus predicted pathogenicity. Our results indicate that computational phenotyping is a promising tool for the assessment of bacteria detected in agricultural ecosystems.
Metabolic changes in pomegranate fruit skin following cold storage promote chilling injury of the peel
Authors: Baghel Ravi Singh , Keren-Keiserman Alexandra , Ginzberg Idit 
Published: April 2021

AbstractPomegranate cv. ‘Wonderful’ fruit are susceptible to chilling injuries of the peel (CIp) when stored at 7 °C in modified-atmosphere bags for more than 3 months. The damage, manifested as superficial browning, is restricted to the fruit skin, i.e., the outer colored layer of the peel. To characterize possible causes of CIp development, fruit were collected at early harvest—when the premature fruit are poorly colored and susceptible to CIp development, and at late harvest—when mature fruit have fully red skin and less susceptibility to CIp. Skin samples were collected on day of harvest and at different time points during storage. Anatomical study of skin with CIp disorder showed a broken cuticle layer with underlying degenerated cells. A high total phenol content, which is associated with high antioxidant capacity, was not sufficient to prevent the development of CIp in the premature fruit. The concentration of punicalagin was the same for premature and mature skin at harvest and during storage, and therefore not associated with CIp development in the premature fruit skin. Furthermore, the expression of antioxidant-related genes CAT2, SOD and GR2 was similar for both premature and mature fruit skin. Poor pigmentation of the premature fruit skin and chilling-induced downregulation of key anthocyanin-biosynthesis genes were associated with CIp development. High total phenol concentration combined with high expression of the gene encoding PPO was also associated with CIp; however, high expression ratio of PAL to PPO was found in mature skin, and may be associated with reduced CIp disorder. The results presented suggest future possibilities for controlling the CIp phenomenon.
Removal of metal ions from water using oxygen plasma
Authors: Khanom Sayma , Hayashi Nobuya 
Published: April 2021

AbstractZinc ion dissolved in water is attempted to be removed by generating the oxides of zinc using the oxygen gas in dielectric barrier discharge (DBD) plasma system. The removal rate of zinc oxides’ production (ZnO and Zn(OH)2) are measured at different treatment periods by the oxygen plasma penetration in water. The removal rate of the deposit increases initially and then decreases with the treatment period. The maximum removal rate (29%) of zinc ion from water is achieved at the treatment period of 10 min, where pH is lower (7.4). From FTIR the generation properties of zinc oxide can be recognized. Initially the amount of the deposit increases with the ozone treatment period due to production of both ZnO and Zn(OH)2. After that, the production of Zn(OH)42-increases even when the total removal rate of the deposit decreases. Therefore, to remove zinc ion from water forming metal oxide deposit, the penetration amount of the active oxygens to the water must be controlled to keep the pH lower than around 7.5. Because with increasing pH amount of removal rate of zinc oxides’ deposit decreases. The pH of the zinc dissolved water treated by ozone depends on both zinc ion and ozone concentration in water.