bluuebunny/crossref_metadata_2025_split huggingface dataset:
Resistance of bone marrow stroma to genotoxic preconditioning is determined by p53
Authors: Fedtsova Natalia , Komarova Elena A. , Greene Kellee F. , Novototskaya Liliya R. , Molodtsov Ivan , Brackett Craig M. , Strom Evguenia , Gleiberman Anatoli S. , Shakhov Alexander N. , Gudkov Andrei V. 
Published: May 2021

AbstractTransplantation of bone marrow (BM) is made possible by the differential sensitivity of its stromal and hematopoietic components to preconditioning by radiation and/or chemotherapeutic drugs. These genotoxic treatments eliminate host hematopoietic precursors by inducing p53-mediated apoptosis but keep the stromal niche sufficiently intact for the engraftment of donor hematopoietic cells. We found that p53-null mice cannot be rescued by BM transplantation (BMT) from even the lowest lethal dose of total body irradiation (TBI). We compared structural changes in BM stroma of mice differing in their p53 status to understand why donor BM failed to engraft in the irradiated p53-null mice. Irradiation did not affect the general structural integrity of BM stroma and induced massive expression of alpha-smooth muscle actin in mesenchymal cells followed by increased adiposity in p53 wild-type mice. In contrast, none of these events were found in p53-null mice, whose BM stroma underwent global structural damage following TBI. Similar differences in response to radiation were observed in in vitro-grown bone-adherent mesenchymal cells (BAMC): p53-null cells underwent mitotic catastrophe while p53 wild-type cells stayed arrested but viable. Supplementation with intact BAMC of either genotype enabled donor BM engraftment and significantly extended longevity of irradiated p53-null mice. Thus, successful preconditioning depends on the p53-mediated protection of cells critical for the functionality of BM stroma. Overall, this study reveals a dual positive role of p53 in BMT: it drives apoptotic death of hematopoietic cells and protects BM stromal cells essential for its functionality.
Development of a numerical model for simulating stress corrosion cracking in spent nuclear fuel canisters
Authors: Wu Xin , Mu Fengwen , Gordon Scott , Olson David , Liu Stephen , Shayer Zeev , Yu Zhenzhen 
Published: May 2021

AbstractPrediction and detection of the chloride-induced stress corrosion cracking (CISCC) in Type 304 stainless steel spent nuclear fuel canisters are vital for the lifetime extension of dry storage canisters. This paper conducts a critical review that focuses on the numerical modeling and simulation on the research progress of the CISCC. The numerical models emphasizing the residual stress, susceptible microstructure, and corrosive environment are summarized individually. Meanwhile, the simulation studies on the role of hydrogen-assisted cracking are reviewed. Finally, a multi-physical numerical model, which combines the different fields is proposed based on our recent investigation.
Process analysis of pluripotent stem cell differentiation to megakaryocytes to make platelets applying European GMP
Authors: Lawrence Moyra , Evans Amanda , Moreau Thomas , Bagnati Marta , Smart Matthew , Hassan Enas , Hasan Jahid , Pianella Monica , Kerby Julie , Ghevaert Cedric 
Published: May 2021

AbstractQuality, traceability and reproducibility are crucial factors in the reliable manufacture of cellular therapeutics, as part of the overall framework of Good Manufacturing Practice (GMP). As more and more cellular therapeutics progress towards the clinic and research protocols are adapted to comply with GMP standards, guidelines for safe and efficient adaptation have become increasingly relevant. In this paper, we describe the process analysis of megakaryocyte manufacture from induced pluripotent stem cells with a view to manufacturing in vitro platelets to European GMP for transfusion. This process analysis has allowed us an overview of the entire manufacturing process, enabling us to pinpoint the cause and severity of critical risks. Risk mitigations were then proposed for each risk, designed to be GMP compliant. These mitigations will be key in advancing this iPS-derived therapy towards the clinic and have broad applicability to other iPS-derived cellular therapeutics, many of which are currently advancing towards GMP-compliance. Taking these factors into account during protocol design could potentially save time and money, expediting the advent of safe, novel therapeutics from stem cells.
A method for the rational selection of drug repurposing candidates from multimodal knowledge harmonization
Authors: Schultz Bruce , Zaliani Andrea , Ebeling Christian , Reinshagen Jeanette , Bojkova Denisa , Lage-Rupprecht Vanessa , Karki Reagon , Lukassen Sören , Gadiya Yojana , Ravindra Neal G. , Das Sayoni , Baksi Shounak , Domingo-Fernández Daniel , Lentzen Manuel , Strivens Mark , Raschka Tamara , Cinatl Jindrich , DeLong Lauren Nicole , Gribbon Phil , Geisslinger Gerd , Ciesek Sandra , van Dijk David , Gardner Steve , Kodamullil Alpha Tom , Fröhlich Holger , Peitsch Manuel , Jacobs Marc , Hoeng Julia , Eils Roland , Claussen Carsten , Hofmann-Apitius Martin 
Published: May 2021

AbstractThe SARS-CoV-2 pandemic has challenged researchers at a global scale. The scientific community’s massive response has resulted in a flood of experiments, analyses, hypotheses, and publications, especially in the field of drug repurposing. However, many of the proposed therapeutic compounds obtained from SARS-CoV-2 specific assays are not in agreement and thus demonstrate the need for a singular source of COVID-19 related information from which a rational selection of drug repurposing candidates can be made. In this paper, we present the COVID-19 PHARMACOME, a comprehensive drug-target-mechanism graph generated from a compilation of 10 separate disease maps and sources of experimental data focused on SARS-CoV-2/COVID-19 pathophysiology. By applying our systematic approach, we were able to predict the synergistic effect of specific drug pairs, such as Remdesivir and Thioguanosine or Nelfinavir and Raloxifene, on SARS-CoV-2 infection. Experimental validation of our results demonstrate that our graph can be used to not only explore the involved mechanistic pathways, but also to identify novel combinations of drug repurposing candidates.
Evaluating atypical language in autism using automated language measures
Authors: Salem Alexandra C. , MacFarlane Heather , Adams Joel R. , Lawley Grace O. , Dolata Jill K. , Bedrick Steven , Fombonne Eric 
Published: May 2021

AbstractMeasurement of language atypicalities in Autism Spectrum Disorder (ASD) is cumbersome and costly. Better language outcome measures are needed. Using language transcripts, we generated Automated Language Measures (ALMs) and tested their validity. 169 participants (96 ASD, 28 TD, 45 ADHD) ages 7 to 17 were evaluated with the Autism Diagnostic Observation Schedule. Transcripts of one task were analyzed to generate seven ALMs: mean length of utterance in morphemes, number of different word roots (NDWR), um proportion, content maze proportion, unintelligible proportion, c-units per minute, and repetition proportion. With the exception of repetition proportion (p $$= .07$$

=
.
07

), nonparametric ANOVAs showed significant group differences (p$$< 0.01$$

<
0.01

). The TD and ADHD groups did not differ from each other in post-hoc analyses. With the exception of NDWR, the ASD group showed significantly (p$$< 0.01$$

<
0.01

) lower scores than both comparison groups. The ALMs were correlated with standardized clinical and language evaluations of ASD. In age- and IQ-adjusted logistic regression analyses, four ALMs significantly predicted ASD status with satisfactory accuracy (67.9–75.5%). When ALMs were combined together, accuracy improved to 82.4%. These ALMs offer a promising approach for generating novel outcome measures.
A psychoacoustic test for misophonia assessment
Authors: Enzler Falco , Loriot Céline , Fournier Philippe , Noreña Arnaud J. 
Published: May 2021

AbstractMisophonia is a condition where a strong arousal response is triggered when hearing specific human generated sounds, like chewing, and/or repetitive tapping noises, like pen clicking. It is diagnosed with clinical interviews and questionnaires since no psychoacoustic tools exist to assess its presence. The present study was aimed at developing and testing a new assessment tool for misophonia. The method was inspired by an approach we have recently developed for hyperacusis. It consisted of presenting subjects (n = 253) with misophonic, pleasant, and unpleasant sounds in an online experiment. The task was to rate them on a pleasant to unpleasant visual analog scale. Subjects were labeled as misophonics (n = 78) or controls (n = 55) by using self-report questions and a misophonia questionnaire, the MisoQuest. There was a significant difference between controls and misophonics in the median global rating of misophonic sounds. On the other hand, median global rating of unpleasant, and pleasant sounds did not differ significantly. We selected a subset of the misophonic sounds to form the core discriminant sounds of misophonia (CDSMiso). A metric: the CDS score, was used to quantitatively measure misophonia, both with a global score and with subscores. The latter could specifically quantify aversion towards different sound sources/events, i.e., mouth, breathing/nose, throat, and repetitive sounds. A receiver operating characteristic analysis showed that the method accurately classified subjects with and without misophonia (accuracy = 91%). The present study suggests that the psychoacoustic test we have developed can be used to assess misophonia reliably and quickly.
Hydropower generation by transpiration from microporous alumina
Authors: Kaur Manpreet , Ishii Satoshi , Nozaki Ryusuke , Nagao Tadaaki 
Published: May 2021

AbstractTraditional hydropower generation is one of the most sustainable energy sources; however, the local environmental impact of hydroelectric dams and reservoirs is serious, and hydroelectric power requires high-cost turbines and generators. Because these installations utilize gravitational potential energy of massive volumes of falling water, this sort of hydropower generation is unsuitable for ubiquitous, small-scale energy production. Here, we report that wetting and evaporation of pure water from a tiny block of porous alumina generates electrical current in the direction of water transpiration. The current induced in microporous alumina is associated with mass transport of water accompanying ions that accumulate near the negatively charged surface of alumina pores. Without any pre-treatment or additives, once evaporation commences, a 3 × 3 cm2 piece of alumina can generate an open-circuit voltage as large as 0.27 V. The power generation scheme we propose here is simple, clean, and versatile, and it can be employed anywhere, as it utilizes only spontaneous capillary action of water and Coulombic interaction at the alumina-water interface, without requiring any input of heat or light.
Wada test results contribute to the prediction of change in verbal learning and verbal memory function after temporal lobe epilepsy surgery
Authors: Conradi Nadine , Rosenberg Friederike , Knake Susanne , Biermann Louise , Haag Anja , Gorny Iris , Hermsen Anke , von Podewils Viola , Behrens Marion , Gurschi Marianna , du Mesnil de Rochemont Richard , Menzler Katja , Bauer Sebastian , Schubert-Bast Susanne , Nimsky Christopher , Konczalla Jürgen , Rosenow Felix , Strzelczyk Adam 
Published: May 2021

AbstractIn recent years, the clinical usefulness of the Wada test (WT) has been debated among researchers in the field. Therefore, we aimed to assess its contribution to the prediction of change in verbal learning and verbal memory function after epilepsy surgery. Data from 56 patients with temporal lobe epilepsy who underwent WT and subsequent surgery were analyzed retrospectively. Additionally, a standard neuropsychological assessment evaluating attentional, learning and memory, visuospatial, language, and executive function was performed both before and 12 months after surgery. Hierarchical linear regression analyses were used to determine the incremental value of WT results over socio-demographic, clinical, and neuropsychological characteristics in predicting postsurgical change in patients’ verbal learning and verbal memory function. The incorporation of WT results significantly improved the prediction models of postsurgical change in verbal learning (∆R2 = 0.233,p = .032) and verbal memory function (∆R2 = 0.386,p = .005). Presurgical performance and WT scores accounted for 41.8% of the variance in postsurgical change in verbal learning function, and 51.1% of the variance in postsurgical change in verbal memory function. Our findings confirm that WT results are of significant incremental value for the prediction of postsurgical change in verbal learning and verbal memory function. Thus, the WT contributes to determining the risks of epilepsy surgery and, therefore, remains an important part of the presurgical work-up of selected patients with clear clinical indications.
Urinary fatty acid binding protein 3 (uFABP3) is a potential biomarker for peripheral arterial disease
Authors: Zamzam Abdelrahman , Syed Muzammil H. , Harlock John , Eikelboom John , Singh Krishna K. , Abdin Rawand , Qadura Mohammad 
Published: May 2021

AbstractPlasma levels of fatty acid binding protein 3 (pFABP3) are elevated in patients with peripheral artery disease (PAD). Since the kidney filters FABP3 from circulation, we investigated whether urinary fatty acid binding protein 3 (uFABP3) is associated with PAD, and also explored its potential as a diagnostic biomarker for this disease state. A total of 130 patients were recruited from outpatient clinics at St. Michael’s Hospital, comprising of 65 patients with PAD and 65 patients without PAD (non-PAD). Levels of uFABP3 normalized for urine creatinine (uFABP3/uCr) were 1.7-folds higher in patients with PAD [median (IQR) 4.41 (2.79–8.08)] compared with non-PAD controls [median (IQR) 2.49 (1.78–3.12), p-value = 0.001]. Subgroup analysis demonstrated no significant effect of cardiovascular risk factors (age, sex, hypertension, hypercholesteremia, diabetes and smoking) on uFABP3/uCr in both PAD and non-PAD patients. Spearmen correlation studies demonstrated a significant negative correlation between uFABP3/uCr and ABI (ρ = − 0.436; p-value = 0.001). Regression analysis demonstrated that uFABP3/Cr levels were associated with PAD independently of age, sex, hypercholesterolemia, smoking, prior history of coronary arterial disease and Estimated Glomerular Filtration rate (eGFR) [odds ratio: 2.34 (95% confidence interval: 1.47–3.75) p-value < 0.001]. Lastly, receiver operator curve (ROC) analysis demonstrated unadjusted area under the curve (AUC) for uFABP3/Cr of 0.79, which improved to 0.86 after adjusting for eGFR, age, hypercholesteremia, smoking and diabetes. In conclusion, our results demonstrate a strong association between uFABP3/Cr and PAD and suggest the potential of uFABP3/Cr in identifying patients with PAD.
Effectiveness of simulation-based training for manual small incision cataract surgery among novice surgeons: a randomized controlled trial
Authors: Nair Akshay Gopinathan , Ahiwalay Chetan , Bacchav Ashish E. , Sheth Tejas , Lansingh Van Charles , Vedula S. Swaroop , Bhatt Venudhar , Reddy Jagadesh C. , Vadavalli Pravin K. , Praveen Smita , Wairagade Nikhilesh Anil , Pettey Jeff 
Published: May 2021

AbstractThis study was designed to determine the effect of a novel simulation-based training curriculum for scleral tunnel construction in manual small incision cataract surgery (MSICS) compared with traditional training. In this multicenter, investigator-masked, randomized clinical trial, resident surgeons within 3 months of matriculation with minimal or no prior experience with MSICS were assigned either to simulation-based training, the Experimental Group (EG), or to conventional training, the Control Group (CG). EG residents were trained to perform scleral tunnel construction using a simulation-based curriculum (HelpMeSee Eye Surgery Simulator), while residents in the CG followed institution-specific curriculum before progressing to live surgery. Surgical videos of the first 20 attempts at tunnel construction were reviewed by masked video raters. The primary outcome was the total number of any of 9 pre-specified errors. On average, the total number of errors was 9.25 (95% CI 0–18.95) in the EG and 17.56 (95% CI 6.63–28.49) in the CG (P = 0.05); the number of major errors was 4.86 (95% CI 0.13–9.59) in the EG and 10.09 (95% CI 4.76–15.41) in the CG (P = 0.02); and the number of minor errors was 4.39 (95% CI 0–9.75) in the EG and 7.47 (95% CI 1.43–13.51) in the CG (P = 0.16). These results support that novice surgeons trained using the novel simulation-based curriculum performed fewer errors in their first 20 attempts at tunnel construction compared to those trained with a conventional curriculum.
Heritable variation in swimming performance in Nile tilapia (Oreochromis niloticus) and negative genetic correlations with growth and harvest weight
Authors: Mengistu Samuel Bekele , Palstra Arjan P. , Mulder Han A. , Benzie John A. H. , Trinh Trong Quoc , Roozeboom Chantal , Komen Hans 
Published: May 2021

AbstractNile tilapia is predominantly produced in smallholder ponds without aeration. We hypothesize that Nile tilapia with high oxygen uptake efficiency (O2UE) may perform better under these conditions than Nile tilapia with low O2UE. Critical swimming speed (Ucrit, in cm s−1) is a potential indicator for O2UE. Our objectives were to estimate variance components for Ucrit and fish size at swim testing early in life, and genetic correlations (rg) between Ucrit with harvest weight (HW) and daily growth coefficient (DGC) later after grow-out in a non-aerated pond. Substantial heritability was found for absolute Ucrit (0.48). The estimated rg between absolute Ucrit and fish size at testing were all strong and positive (range 0.72–0.83). The estimated rg between absolute Ucrit and HW, and absolute Ucrit and DGC were − 0.21 and − 0.63 respectively, indicating that fish with higher absolute Ucrit had lower growth in the non-aerated pond as compared to fish with lower absolute Ucrit. These results suggest a juvenile trade-off between swimming and growth performance where fish with high Ucrit early in life show slower growth later under conditions of limited oxygen availability. We conclude that Ucrit in Nile tilapia is heritable and can be used to predict growth performance.
CT definition of the surgical apex in the orbit
Authors: Zurinam Olga , Safieh Christine , Redler Yael , Orbach Adi , Lumelsky Dmitry , Neeman Ziv , Briscoe Daniel 
Published: May 2021

AbstractThe orbital apex is an undefined but well understood concept of Orbital Surgeons. We sought to determine the surgical apex area specifically where the volume ratio decreases significantly impacting on the optic nerve. A retrospective analysis using PACS program processing, measured the right retrobulbar space volume changes in 100 randomly selected cases without orbital pathology where CT was performed for non-ophthalmic indications. Volume of the retrobulbar space was measured between two recognizable landmarks. The first landmark being the point of exit of the optic nerve from the eye and the second landmark the optic nerve's point of exit from the orbit. The measured length between these two points was divided into five equal segments, V1-V5. The volumes of all 5 segments were compared and the most significant area of volume depletion was established. The mean numeric value of measured orbital volumes was compared. A ratio difference of V1/V2 was less than 2, V2/V3 was 2.32 (± 0.27), V3/4 was 3.24 (± 0.39), and V4/V5 was 5.67 (± 1.66). The most remarkable difference in ratio was between V4 and V5 (mean 5.67 ± 1.66 with p < .0001). The V3 segment (the posterior 3/5 of the retrobulbar space volume) is the location where decrease in orbital volume impacts, and measured ratios are statistically significant. We defined the surgical apex as the posterior 3/5 of the retro-bulbar orbital space. It is consequently the area of higher risk for optic nerve compression. This definition could be routinely utilized by ophthalmologists and neuroradiologists when evaluating masses affecting the orbit.
Microbiota dysbiosis and functional outcome in acute ischemic stroke patients
Authors: Chang Yoonkyung , Woo Ho Geol , Jeong Jee Hyang , Kim Geon Ha , Park Kee Duk , Song Tae-Jin 
Published: May 2021

AbstractCurrently, few studies are reported on the composition of microbiota in stroke patients and the association with stroke prognosis. This study investigated the differing microbiota composition in stroke patients and confirmed the association of microbiota composition with poor functional outcome. Between January of 2018 and December of 2019, 198 patients with acute cerebral infarction were included in this study. For the case–control study, age and sex-matched normal healthy subjects (n = 200) were included when receiving their health screening examinations. We isolated bacterial extracellular membrane vesicles and extracted DNA from blood samples. Taxonomic assignments were performed by using the sequence reads of 16S rRNA genes following blood microbiota analysis. Statistical analysis was conducted appropriately by using Statistical Analysis System software. The mean age of the stroke patients were 63.7 ± 12.5 years, and the male sex was 58.5%. Of the total enrolled patients, poor functional outcome (modified Rankin Score ≥ 3) was noted in 19.7%. The principal component analysis of microbiota composition revealed significant differences between healthy control subjects and stroke patients. At the genus level, Aerococcaceae(f), ZB2(c), TM7-1(c), and Flavobacterium were significantly increased in stroke patients compared to the healthy controls, whereas Mucispirillum, rc4-4, Akkermansia, Clostridiales(o), Lactobacillus, and Stenotrophomonas were decreased considerably. For the functional outcome after ischemic stroke, Anaerococcus, Blautia, Dialister, Aerococcaceae(f), Propionibacterium, Microbacteriaceae(f), and Rothia were enriched in the group with good outcomes, whereas Ruminococcaceae(f) and Prevotella were enriched in the group with poor outcome. There was apparent dysbiosis of blood microbiota in patients with acute ischemic stroke compared to healthy people. Ruminococcaceae(f) and Prevotella were elevated in stroke patients with poor functional outcome.
Rapid detection of avian leukosis virus subgroup J by cross-priming amplification
Authors: Xiang Yong , Li Lizhen , Liu Peng , Yan Ling , Jiang Zeng , Yu Yun , Li Yu , Chen Xiaoyan , Cao Weisheng 
Published: May 2021

AbstractAvian leukosis virus subgroup J (ALV-J) causes oncogenic disease in chickens in China, resulting in great harm to poultry production, and remains widespread in China. Herein, we employed a cross-priming amplification (CPA) approach and a nucleic acid detection device to establish a visual rapid detection method for ALV-J. The sensitivity of CPA, polymerase chain reaction (PCR) and real-time PCR (RT-PCR) was compared, and the three methods were used to detect ALV-J in the cell cultures which inoculated with clinical plasma. The result showed when the amplification reaction was carried out at 60 °C for just 60 min, the sensitivity of CPA was 10 times higher than conventional PCR, with high specificity, which was comparable with RT-PCR, based on detection of 123 cell cultures which inoculated with clinical plasma, the coincidence rate with real-time PCR was 97.3% (71/73). CPA detection of ALV-J does not require an expensive PCR instrument; a simple water bath or incubator is sufficient for complete DNA amplification, and the closed nucleic acid detection device avoids aerosol pollution, making judgment of results more intuitive and objective. The CPA assay would be a promising simple, rapid and sensitive method for identification of ALV-J.