bluuebunny/crossref_metadata_2025_split huggingface dataset:
Evidence for temporal relationship between the late Mesozoic multistage Qianlishan granite complex and the Shizhuyuan W–Sn–Mo–Bi deposit, SE China
Authors: Liao Yuzhong , Zhao Bo , Zhang Dehui , Danyushevsky Leonid V. , Li Tonglin , Wu Mingqian , Liu Feng 
Published: March 2021

AbstractThe world-class Shizhuyuan W–Sn–Mo–Bi deposit is spatially related to the Qianlishan granite complex (QGC) in Hunan Province, China. However, the age and classification of the QGC are still debated, and a better understanding of the temporal genetic relationship between the QGC and the Shizhuyuan deposit is essential. Here, we present chemical compositions the intrusive phases of the QGC and the results of detailed zircon U–Pb dating and muscovite Ar–Ar dating of a mineralized greisen vein. Our new zircon laser ablation inductively coupled plasma mass spectrometry U–Pb age data constrain the emplacement of the QGC to 155–151.7 Ma. According to petrological, geochemical and geochronological data and the inferred redox conditions, the QGC can be classified into four phases: P1, porphyritic biotite granites; P2, porphyritic biotite granites; P3, equigranular biotite granite; and P4, granite porphyry dikes. All phases, and especially P1-P3, have elevated concentrations of ore-forming metals and heat-producing elements (U, Th, K; volume heat-producing rate of 5.89–14.03 μWm−3), supplying the metal and heat for the metalogic process of the Shizhuyuan deposit. The Ar–Ar muscovite age (154.0 ± 1.6 Ma) of the mineralized greisen vein in the Shizhuyuan deposit is consistent with the emplacement time of the QGC, suggesting their temporal genetic relationship.
From rumor to genetic mutation detection with explanations: a GAN approach
Authors: Cheng Mingxi , Li Yizhi , Nazarian Shahin , Bogdan Paul 
Published: March 2021

AbstractSocial media have emerged as increasingly popular means and environments for information gathering and propagation. This vigorous growth of social media contributed not only to a pandemic (fast-spreading and far-reaching) of rumors and misinformation, but also to an urgent need for text-based rumor detection strategies. To speed up the detection of misinformation, traditional rumor detection methods based on hand-crafted feature selection need to be replaced by automatic artificial intelligence (AI) approaches. AI decision making systems require to provide explanations in order to assure users of their trustworthiness. Inspired by the thriving development of generative adversarial networks (GANs) on text applications, we propose a GAN-based layered model for rumor detection with explanations. To demonstrate the universality of the proposed approach, we demonstrate its benefits on a gene classification with mutation detection case study. Similarly to the rumor detection, the gene classification can also be formulated as a text-based classification problem. Unlike fake news detection that needs a previously collected verified news database, our model provides explanations in rumor detection based on tweet-level texts only without referring to a verified news database. The layered structure of both generative and discriminative models contributes to the outstanding performance. The layered generators produce rumors by intelligently inserting controversial information in non-rumors, and force the layered discriminators to detect detailed glitches and deduce exactly which parts in the sentence are problematic. On average, in the rumor detection task, our proposed model outperforms state-of-the-art baselines on PHEME dataset by $$26.85\%$$

26.85
%

in terms of macro-f1. The excellent performance of our model for textural sequences is also demonstrated by the gene mutation case study on which it achieves $$72.69\%$$

72.69
%

macro-f1 score.
Isolation and characterization of two virulent Aeromonads associated with haemorrhagic septicaemia and tail-rot disease in farmed climbing perch Anabas testudineus
Authors: Mazumder Abhishek , Choudhury Hrishikesh , Dey Abhinit , Sarma Dandadhar 
Published: March 2021

AbstractDiseased Anabas testudineus exhibiting signs of tail-rot and ulcerations on body were collected from a fish farm in Assam, India during the winter season (November 2018 to January 2019). Swabs from the infected body parts were streaked on sterilized nutrient agar. Two dominant bacterial colonies were obtained, which were then isolated and labelled as AM-31 and AM-05. Standard biochemical characterisation and 16S rRNA and rpoB gene sequencing identified AM-31 isolate as Aeromonas hydrophila and AM-05 as Aeromonas jandaei. Symptoms similar to that of natural infection were observed on re-infecting both bacteria to disease-free A. testudineus, which confirmed their virulence. LC50 was determined at 1.3 × 104 (A. hydrophila) and 2.5 × 104 (A. jandaei) CFU per fish in intraperitoneal injection. Further, PCR amplification of specific genes responsible for virulence (aerolysin and enterotoxin) confirmed pathogenicity of both bacteria. Histopathology of kidney and liver in the experimentally-infected fishes revealed haemorrhage, tubular degeneration and vacuolation. Antibiotic profiles were also assessed for both bacteria. To the best of our knowledge, the present work is a first report on the mortality of farmed climbing perch naturally-infected by A. hydrophila as well as A. jandaei, with no records of pathogenicity of the latter in this fish.
Patient individual phase gating for stereotactic radiation therapy of early stage non-small cell lung cancer (NSCLC)
Authors: Kraus K. M. , Oechsner M. , Wilkens J. J. , Kessel K. A. , Münch S. , Combs S. E. 
Published: March 2021

AbstractStereotactic body radiotherapy (SBRT) applies high doses and requires advanced techniques to spare surrounding tissue in the presence of organ motion. In this work patient individual phase gating is investigated. We studied peripheral and central primary lung tumors. The internal target volume (ITV) was defined including different numbers of phases picked from a 4D Computed tomography (CT) defining the gating window (gw). Planning target volume (PTV) reductions depending on the gw were analyzed. A treatment plan was calculated on a reference phase CT (rCT) and the dose for each breathing phase was calculated and accumulated on the rCT. We compared the dosimetric results with the dose calculated when all breathing phases were included for ITV definition. GWs including 1 to 10 breathing phases were analyzed. We found PTV reductions up to 38.4%. The mean reduction of the lung volume receiving 20 Gy due to gating was found to be 25.7% for peripheral tumors and 16.7% for central tumors. Gating considerably reduced esophageal doses. However, we found that simple reduction of the gw does not necessarily influence the dose in a clinically relevant range. Thus, we suggest a patient individual definition of the breathing phases included within the gw.
Primary ectocervical epithelial cells display lower permissivity to Chlamydia trachomatis than HeLa cells and a globally higher pro-inflammatory profile
Authors: Tang Chongfa , Liu Chang , Maffei Benoit , Niragire Béatrice , Cohen Henri , Kane Aminata , Donnadieu Anne-Claire , Levy-Zauberman Yael , Vernay Thomas , Hugueny Juliette , Vincens Etienne , Louis-Sylvestre Christine , Subtil Agathe , Wu Yongzheng 
Published: March 2021

AbstractThe tumoral origin and extensive passaging of HeLa cells, a most commonly used cervical epithelial cell line, raise concerns on their suitability to study the cell responses to infection. The present study was designed to isolate primary epithelial cells from human ectocervix explants and characterize their susceptibility toC. trachomatisinfection. We achieved a high purity of isolation, assessed by the expression of E-cadherin and cytokeratin 14. The infectious progeny in these primary epithelial cells was lower than in HeLa cells. We showed that the difference in culture medium, and the addition of serum in HeLa cultures, accounted for a large part of these differences. However, all things considered the primary ectocervical epithelial cells remained less permissive than HeLa cells toC. trachomatisserovar L2 or D development. Finally, the basal level of transcription of genes coding for pro-inflammatory cytokines was globally higher in primary epithelial cells than in HeLa cells. Transcription of several pro-inflammatory genes was further induced by infection withC. trachomatisserovar L2 or serovar D. In conclusion, primary epithelial cells have a strong capacity to mount an inflammatory response toChlamydiainfection. Our simplified purification protocol from human explants should facilitate future studies to understand the contribution of this response to limiting the spread of the pathogen to the upper female genital tract.
Classification of sleep apnea based on EEG sub-band signal characteristics
Authors: Zhao Xiaoyun , Wang Xiaohong , Yang Tianshun , Ji Siyu , Wang Huiquan , Wang Jinhai , Wang Yao , Wu Qi 
Published: March 2021

AbstractSleep apnea syndrome (SAS) is a disorder in which respiratory airflow frequently stops during sleep. Alterations in electroencephalogram (EEG) signal are one of the physiological changes that occur during apnea, and can be used to diagnose and monitor sleep apnea events. Herein, we proposed a method to automatically distinguish sleep apnea events using characteristics of EEG signals in order to categorize obstructive sleep apnea (OSA) events, central sleep apnea (CSA) events and normal breathing events. Through the use of an Infinite Impulse Response Butterworth Band pass filter, we divided the EEG signals of C3-A2 and C4-A1 into five sub-bands. Next, we extracted sample entropy and variance of each sub-band. The neighbor composition analysis (NCA) method was utilized for feature selection, and the results are used as input coefficients for classification using random forest, K-nearest neighbor, and support vector machine classifiers. After a 10-fold cross-validation, we found that the average accuracy rate was 88.99%. Specifically, the accuracy of each category, including OSA, CSA and normal breathing were 80.43%, 84.85%, and 95.24%, respectively. The proposed method has great potential in the automatic classification of patients' respiratory events during clinical examinations, and provides a novel idea for the development of an automatic classification system for sleep apnea and normal events without the need for expert intervention.
Radio-frequency single electron transistors in physically defined silicon quantum dots with a sensitive phase response
Authors: Mizokuchi Raisei , Bugu Sinan , Hirayama Masaru , Yoneda Jun , Kodera Tetsuo 
Published: March 2021

AbstractRadio-frequency reflectometry techniques are instrumental for spin qubit readout in semiconductor quantum dots. However, a large phase response is difficult to achieve in practice. In this work, we report radio-frequency single electron transistors using physically defined quantum dots in silicon-on-insulator. We study quantum dots which do not have the top gate structure considered to hinder radio frequency reflectometry measurements using physically defined quantum dots. Based on the model which properly takes into account the parasitic components, we precisely determine the gate-dependent device admittance. Clear Coulomb peaks are observed in the amplitude and the phase of the reflection coefficient, with a remarkably large phase signal of ∼45°. Electrical circuit analysis indicates that it can be attributed to a good impedance matching and a detuning from the resonance frequency. We anticipate that our results will be useful in designing and simulating reflectometry circuits to optimize qubit readout sensitivity and speed.
Point-of-care SARS-CoV-2 serological assays for enhanced case finding in a UK inpatient population
Authors: Pallett S. J. C. , Denny S. J. , Patel A. , Charani E. , Mughal N. , Stebbing J. , Davies G. W. , Moore L. S. P. 
Published: March 2021

AbstractSevere Acute Respiratory Syndrome coronavirus 2 (SARS-CoV-2) has become a global pandemic. Case identification is currently made by real-time polymerase chain reaction (PCR) during the acute phase and largely restricted to healthcare laboratories. Serological assays are emerging but independent validation is urgently required to assess their utility. We evaluated five different point-of-care (POC) SARS-CoV-2 antibody test kits against PCR, finding concordance across the assays (n = 15). We subsequently tested 200 patients using the OrientGene COVID-19 IgG/IgM Rapid Test Cassette and find a sensitivity of 74% in the early infection period (day 5–9 post symptom onset), with 100% sensitivity not seen until day 13, demonstrating inferiority to PCR testing in the infectious period. Negative rate was 96%, but in validating the serological tests uncovered potential false-negatives from PCR testing late-presenting cases. A positive predictive value (PPV) of 37% in the general population precludes any use for general screening. Where a case definition is applied however, the PPV is substantially improved (95.4%), supporting use of serology testing in carefully targeted, high-risk populations. Larger studies in specific patient cohorts, including those with mild infection are urgently required to inform on the applicability of POC serological assays to help control the spread of SARS-CoV-2 and improve case finding of patients that may experience late complications.
Responsiveness to ripasudil may be a potential outcome marker for selective laser trabeculoplasty in patients with primary open-angle glaucoma
Authors: Baba Taro , Hirooka Kazuyuki , Nii Hiroki , Kiuchi Yoshiaki 
Published: March 2021

AbstractWe examined responsiveness to ripasudil as a potential factor for predicting the effect of selective laser trabeculoplasty (SLT) when performed for primary open-angle glaucoma (POAG). A total of 70 eyes with no history of glaucoma surgery underwent SLT between January 2015 and June 2019. Patients were divided into two groups, with an intraocular pressure (IOP) decrease of 15% or more due to ripasudil administration before SLT defined as the effective group, while an IOP decrease of less than 15% was defined as the non-effective group. Kaplan–Meier survival analysis was performed. A Cox proportional hazards model assessed the influence of baseline factors on the success. Of the 70 eyes evaluated, treatments were effective in 22 and non-effective in 48. Postoperatively, both groups exhibited IOP reductions for up to 24 months. Success ratios at 12 and 24 months after SLT were 43.5% and 18.5% in the effective versus 24.9% and 9.3% in the non-effective group, which were significantly higher in the effective group (P = 0.03). Presence of a ripasudil effective eye (P = 0.03) was associated with treatment success. Responsiveness to ripasudil may be useful in predicting the therapeutic effect of SLT.
Role of vitamin D serum levels in prevention of primary and recurrent melanoma
Authors: Lombardo M. , Vigezzi A. , Ietto G. , Franchi C. , Iori V. , Masci F. , Scorza A. , Macchi S. , Iovino D. , Parise C. , Carcano G. 
Published: March 2021

AbstractPatients afflicted with melanoma show lower vitamin D serum levels (VDSL) than the healthy population. This hypothesis agrees with its well-known antiproliferative features. An observational study was carried out to collect VDSL in patients suffering from melanoma. Our aim was to identify a potential connection between low VDSL and the risk to incur melanoma. Furthermore, we studied the association between VDSL at the diagnosis of melanoma and other germane prognostic factors. The population held in regard was composed of 154 patients with a diagnosis of melanoma between 2016 and 2019. These patients were retrospectively collected from our follow-up storage. We compared VDSL to clinical and pathological parameters (age, sex, tumour location, Breslow’s depth, Clark’s level, histological subtype, ulceration, et aliqua). Moreover, we recruited a control group with negative melanoma history. Mean and median of VDSL were significantly lower in the melanoma group. Instead, we found a negative association between melanoma and VDSL > 30 ng/L (OR 0.11; p < 0.0001). No correlation between VDSL and both Breslow’s depth and Clark’s level was discovered, but the VDSL comparison between thin (depth ≤ 1 mm) and thick tumours (depth > 1 mm) revealed a statistically significant difference (21.1 ± 8.2 ng/L vs 17.8 ± 8.1; p = 0.01). Moreover, VDSL were significantly lower in melanomas with mitotic rate ≥ 1/mm2 (22.1 ± 8.3 ng/L; p < 0007). Nevertheless, no connection was found between VDSL and both ulceration and positive sentinel nodes (p = 0.76; p = 0.74). Besides, our study revealed no association between VDSL and histological subtype (p = 0.161). Lower VDSL correlate with thick and high mitotic rate tumours. Future prospective studies would investigate if appropriate upkeep of suitable VDSL can decrease the risk of primary and recurrent melanoma diagnosis.
Electron liquid state in the symmetric Anderson lattice
Authors: Karnaukhov Igor N. 
Published: March 2021

AbstractUsing mean field approach, we provide analytical and numerical solution of the symmetric Anderson lattice for arbitrary dimension at half filling. The symmetric Anderson lattice is equivalent to the Kondo lattice, which makes it possible to study the behavior of an electron liquid in the Kondo lattice. We have shown that, due to hybridization (through an effective field due to localized electrons) of electrons with different spins and momenta $$\mathbf{k} $$
k
and $$\mathbf{k} +\overrightarrow{\pi }$$

k
+

π
→

, the gap in the electron spectrum opens at half filling. Such hybridization breaks the conservation of the total magnetic momentum of electrons, the spontaneous symmetry is broken. The state of electron liquid is characterized by a large Fermi surface. A gap in the spectrum is calculated depending on the magnitude of the on-site Coulomb repulsion and value of s–d hybridization for the chain, as well as for square and cubic lattices. Anomalous behavior of the heat capacity at low temperatures in the gapped state, which is realized in the symmetric Anderson lattice, was also found.
An intercomparison of the pore network to the Navier–Stokes modeling approach applied for saturated conductivity estimation from X-ray CT images
Authors: Gackiewicz Bartłomiej , Lamorski Krzysztof , Sławiński Cezary , Hsu Shao-Yiu , Chang Liang-Cheng 
Published: March 2021

AbstractDifferent modeling techniques can be used to estimate the saturated conductivity of a porous medium based on computed tomography (CT) images. In this research, two methods are intercompared: direct modeling using the Navier–Stokes (NS) approach and simplified geometry pore network (PN) modeling. Both modeling approaches rely on pore media geometry which was determined using an X-ray CT scans with voxel size 2 μm. An estimate of the saturated conductivity using both methods was calculated for 20 samples prepared from sand with diverse particle size distributions. PN-estimated saturated conductivity was found to be statistically equivalent to the NS-determined saturated conductivity values. The average value of the ratio of the PN-determined conductivity to the NS-determined conductivity (KsatPN/NS) was equal to 0.927. In addition to the NS and PN modeling approaches, a simple Kozeny-Carman (KC) equation-based estimate was made. The comparison showed that the KC estimate overestimated saturated conductivity by more than double (2.624) the NS estimate. A relationship was observed between the porous media specific surface and the KsatPN/NS ratio. The tortuosity of analyzed samples was estimated, the correlation between the porous media tortuosity and the specific surface of the samples was observed. In case of NS modelling approach the difference between pore media total porosity and total porosity of meshes, which were lower, generated for simulations were observed. The average value of the differences between them was 0.01. The method of NS saturated conductivity error estimation related to pore media porosity underestimation by numerical meshes was proposed. The error was on the average 10% for analyzed samples. The minimum value of the error was 4.6% and maximum 19%.
Metabolic engineering of probiotic Escherichia coli for cytolytic therapy of tumors
Authors: Chiang Chung-Jen , Huang Po-Han 
Published: March 2021

AbstractBacterial cancer therapy was developed using probiotic Escherichia coli Nissle 1917 (EcN) for medical intervention of colorectal cancer. EcN was armed with HlyE, a small cytotoxic protein, under the control of the araBAD promoter (PBAD). The intrinsic limitation of PBAD for the gene expression is known to be negated by glucose and afflicted with all-or-nothing induction in host bacteria. This issue was addressed by metabolic engineering of EcN to uncouple the glucose-mediated control circuit and the L-arabinose transport-induction loop and to block L-arabinose catabolism. As a result, the reprogrammed strain (designated EcNe) enabled efficient expression of HlyE in a temporal control manner. The HlyE production was insensitive to glucose and reached a saturated level in response to L-arabinose at 30–50 μM. Moreover, the administrated EcNe exhibited tumor-specific colonization with the tumor-to-organ ratio of 106:1. Equipped with HlyE, EcNe significantly caused tumor regression in mice xenografted with human colorectal cancer cells. Overall, this study proposes a new strategy for the bacteria-mediated delivery of therapeutic proteins to tumors.
A focused very high energy electron beam for fractionated stereotactic radiotherapy
Authors: Svendsen Kristoffer , Guénot Diego , Svensson Jonas Björklund , Petersson Kristoffer , Persson Anders , Lundh Olle 
Published: March 2021

AbstractAn electron beam of very high energy (50–250 MeV) can potentially produce a more favourable radiotherapy dose distribution compared to a state-of-the-art photon based radiotherapy technique. To produce an electron beam of sufficiently high energy to allow for a long penetration depth (several cm), very large accelerating structures are needed when using conventional radio-frequency technology, which may not be possible due to economical or spatial constraints. In this paper, we show transport and focusing of laser wakefield accelerated electron beams with a maximum energy of 160 MeV using electromagnetic quadrupole magnets in a point-to-point imaging configuration, yielding a spatial uncertainty of less than 0.1 mm, a total charge variation below $$1 \%$$

1
%

and a focal spot of $$2.3 \times 2.6\;{\text {mm}}^2$$

2.3
×
2.6

mm

2

. The electron beam was focused to control the depth dose distribution and to improve the dose conformality inside a phantom of cast acrylic slabs and radiochromic film. The phantom was irradiated from 36 different angles to obtain a dose distribution mimicking a stereotactic radiotherapy treatment, with a peak fractional dose of 2.72 Gy and a total maximum dose of 65 Gy. This was achieved with realistic constraints, including 23 cm of propagation through air before any dose deposition in the phantom.
Synthesis and performance of ZnO quantum dots water-based fluorescent ink for anti-counterfeiting applications
Authors: Chen Xi , Wang Qi , Wang Xiao-Ju , Li Jie , Xu Guo-Bin 
Published: March 2021

AbstractIn this study, the ZnO quantum dots (QDs) water-based fluorescent anti-counterfeiting ink was prepared with the polyvinylpyrrolidone (PVP) content of 0.15–0.17 g/mL, the ZnO QDs concentration of 4% and water as the solvent, which has good fluorescence, printability and resistance. According to the halftone technology, fluorescence quenching of the ZnO QDs by acid, and acid resistance of the organic fluorescent ink, a high-quality anti-counterfeiting method of fluorescent discoloration was proposed. The QDs ink has broad application prospects in the field of anti-counterfeiting green packaging.