bluuebunny/crossref_metadata_2025_split huggingface dataset:
Compensatory Phenolic Induction Dynamics in Aspen After Aphid Infestation
Authors: Gaur Rajarshi Kumar , Abreu Ilka Nacif , Albrectsen Benedicte Riber 
Published: December 2021

Abstract
Condensed tannins (CTs) are polyphenolics and part of the total phenolic (TP) pool that shape resistance in aspen (Populus tremula). CTs negatively associate with pathogens, but their resistance properties against herbivores are less understood. Piercing, sucking arthropods, such as aphids, share similar defence pathways with pathogens suggesting that CTs could also shape resistance to aphids, potentially together with other phenolics. Being highly variable it can further be questioned whether CT-shaped resistance is better described by constitutive levels, by the induced response potential, or by both. Here, aspen genotypes were propagated and selected to represent a range of inherent abilities to produce and store foliar CTs; the plantlets were then exposed to Chaitophorus aphid infestation and to mechanical (leaf rupture) damage, and the relative abundance of constitutive and induced CTs was related to aphid fitness parameters. As expected, aphid fecundity was negatively related to CT-concentrations of the aphid infested plants although more consistently related to TPs. While TPs increased in response to damage, CT induction was generally low and it even dropped below constitutive levels in more CT-rich genotypes, suggesting that constitutive CTs are more relevant measurements of resistance compared to induced CT-levels. Relating CT and TP dynamics with phenolic low molecular compounds further suggested that catechin (the building block of CTs) increased in response to aphid damage in amounts that correlated negatively with CT-induction and positively with constitutive CT-levels and aphid fecundity. Our study portrays dynamic phenolic responses to two kinds of damage detailed for major phenylpropanoid classes and suggests that the ability of a genotype to produce and store CTs may be a measurement of resistance, caused by other, more reactive, phenolic compounds such as catechin. Rupture damage however appeared to induce catechin levels oppositely supporting that CTs may respond differently to different kinds of damage.
Mitochondrial Genome Recombination in Somatic Hybrids of Solanum Commersonii and S. Tuberosum
Authors: Cho Kwang-Soo , Lee Hyun-Oh , Lee Sang-Choon , Park Hyun-Jin , Seo Jin-Hee , Cho Ji-Hong , Park Young-Eun , Choi Jang-Gyu , Yang Tae-Jin 
Published: December 2021

Abstract
Interspecific somatic hybridization has been performed in potato breeding experiments to increase plant resistance against biotic and abiotic stress conditions. We analyzed the mitochondrial and plastid genomes and 45S nuclear ribosomal DNA (45S rDNA) for the cultivated potato (S. tuberosum, St), wild potato (S. commersonii, Sc), and their somatic hybrid (StSc). Complex genome components and structure, such as the hybrid form of 45S rDNA in StSc, unique plastome in Sc, and recombinant mitogenome were identified. However, the mitogenome exhibited dynamic multipartite structures in both species as well as in the somatic hybrid. In St, the mitogenome is 756,058 bp and is composed of five subgenomes ranging from 297,014 to 49,171 bp in St. In Sc, it is 552,103 bp long and is composed of two sub-genomes of 338,427 and 213,676 bp length. StSc has 447,645 bp long mitogenome with two subgenomes of length 398,439 and 49,206 bp. The mitogenome structure exhibited dynamic recombination mediated by tandem repeats; however, it contained highly conserved genes in the three species. Among the 35 protein-coding genes of the StSc mitogenome, 21 were identical for all the three species, and 12 and 2 were unique in Sc and St, respectively. The recombinant mitogenome might be derived from homologous recombination between both species during somatic hybrid development.
Warmer spring temperatures in temperate deciduous forests advance the timing of tree growth but have little effect on annual woody productivity
Authors: Anderson-Teixeira Kristina , Dow Cameron , Kim Albert ,   Loïc D&#039;Orangeville, Gonzalez-Akre Erika , Helcoski Ryan , Herrmann Valentine , Harley Grant , Maxwell Justin , McGregor Ian , McShea William , McMahon Sean , Pederson Neil , Tepley Alan 
Published: December 2021

Abstract

As the climate changes, warmer spring temperatures are causing earlier leaf-out1–6 and commencement of net carbon dioxide (CO2) sequestration2,4 in temperate deciduous forests, resulting in a tendency towards increased growing season length1,4,5,7–9 and annual CO2 uptake2,4,10–14. However, less is known about how spring temperatures affect tree stem growth, which sequesters carbon (C) in wood that has a long residence time in the ecosystem15,16. Using dendrometer band measurements from 463 trees across two forests, we show that warmer spring temperatures shifted the woody growth of deciduous trees earlier but had no consistent effect on peak growing season length, maximum daily growth rates, or annual growth. The latter finding was confirmed on the centennial scale by 207 tree-ring chronologies from 108 forests across eastern North America, where annual growth was far more sensitive to temperatures during the peak growing season than in the spring. These findings imply that extra CO2 uptake in years with warmer springs10–12 is not allocated to long-lived woody biomass, where it could have a substantial and lasting impact on the forest C balance. Rather, contradicting current projections from global C cycle models2,3,17,18, our empirical results imply that warming spring temperatures are unlikely to increase the woody productivity or strengthen the CO2 sink of temperate deciduous forests.
Iminodisuccinic Acid Relieved Cadmium Stress in Rapeseed Leaf by Affecting Cadmium Distribution and Cadmium Chelation With Pectin
Authors: Tian Hui , Zhu Zihan , Song Haixing , Wu Xiuwen 
Published: December 2021

Abstract

Rapeseed (Brassica napus. L) is a nutritious vegetable, while cadmium (Cd) pollution threatens the growth, productivity, and food security of rapeseed. By studying the effects of iminodisuccinic acid (IDS), an easily biodegradable and environmental friendly chelating agent, on Cd distribution at the organ and cellular level, we found IDS promoted dry matter accumulation of rapeseed and increased the contents of photosynthetic pigment in leaves. Inhibited root-shoot Cd transport resulted in higher activity of antioxidant enzymes and decreased hydrogen peroxide (H2O2) and malondialdehyde (MDA) accumulation in leaves, which indicated that IDS contributed to alleviating Cd-caused oxidative damage in leaf cells. Additionally, IDS increased Cd distribution in cell wall (CW) and relieved Cd toxicity in organelle of leaves, while IDS did not change the contents of different CW components. The improved Cd fixation in leaf CW was mainly attributed to enhanced demethylation of covalently bound pectin (CSP) and Cd chelation with CSP.
Systematic Review on Socioeconomic and Environmental Factors of Leptospirosis
Authors: Wada Surajo Adamu , Neela Vasantha Kumari 
Published: December 2021

Abstract
Background: Leptospirosis is a Global emerging zoonotic tropical bacterial disease of the genus Leptospira, with high morbidity and mortality, especially in resource-limited communities. This study is a systematic review on the incidence of socioeconomic and environmental factors of human leptospirosis. Methods: The research involved published articles from PubMed, Scopus, and Google Scholar electronic databases for nine years. It also encompasses all cases analysed for the risk factors under study reported as numerical percentage incidences. The key terms searched in the database include "leptospirosis, Leptospira, human, patients, socioeconomic, environmental, risk factors, incidence, and prevalence." The search terms from the categories were linked with "OR" and those between categories with "AND." Retrieved articles were saved as comma-separated values (CVS) files and sorted out using the inclusion and exclusion criteria for the study, and then presented in PRISMA plot.Results: PubMed search revealed 133 that reduced to 14 after eligibility screening. Scopus produced 338, of which 17 met all the inclusion criteria. Finally, ten publications were qualified for further analysis. Descriptive statistics was used to analysed the association of means of the various factors associated with leptospirosis. Association with rodents had the highest mean incidence of 52.6% among the environmental factors, whereas farming activity among the socioeconomic factors had the highest mean incidence (44.3%). Conclusion: The authority concerned should improve efforts toward health education to farmers regarding personal safety and protective equipment. They should also encourage communities to improve environmental sanitation practices to minimize rodent populations.
A New Modified MR Dual Precision Positioning of Thin-Slice Oblique Sagittal Fat Suppression Proton Density Weighted Imaging: Its Diagnostic Accuracy in Anterior Cruciate Ligament Injury and its Grades
Authors: Li Kun , Jhonatan Felix Young , Yu Zhaohui , Chen Jinhua , Huang Lixin , Yang Huilin , Du Jun 
Published: December 2021

Abstract
Purpose To evaluate the diagnostic accuracy of a new modified MR dual precision positioning of thin-slice oblique sagittal fat suppression proton density-weighted imaging (DPP-TSO-Sag-FS-PDWI) sequence in detecting ACL injuries and its grades compared to standard sequences using arthroscopy as the standard reference.Materials and Methods 42 patients enrolled in this retrospective study received the 1.5-T MRI with standard sequences and the new modified DPP-TSO-Sag-FS-PDWI sequence, and their arthroscopy results was recorded. The Mc Nemer-Bowker and weighted Kappa was performed to compare the consistency of MRI diagnosis with arthroscopic results. Finally, the diagnostic accuracy was calculated based on the true positive, true negative, false negative and false positive values.Results The diagnostic consistency of the DPP-TSO-Sag-FS-PDWI were higher than standard sequences for both reader 1 (K = 0.876 vs. 0.620) and reader 2 (K = 0.833 vs. 0.683) with good diagnostic repeatability (K = 0.794 vs. 0.598). Furthermore, the DPP-TSO-Sag-FS-PDWI can classify and diagnose three grades of ACL injury [the sensitivity, specificity, accuracy, positive predictive value (PPV) and negative predictive value were more than 84%], especially for grade II injury as the PPV was superior for reader 1 (92.3% vs. 53.9%) and reader 2 (84.6% vs. 69.2%).Conclusion The new modified DPP-TSO-Sag-FS-PDWI sequence can display the ACL injury on one or continuous levels by maximizing the acquisition of complete ligament shape and true anatomical images, and excluding the influence of anatomical differences between individuals. It can improve the diagnostic accuracy with good repeatability and classify three grades of the ACL injury.
A Simplified Methodology for Rapidly Analyzing the Effect of Multi-Hazard Scenario on Atmospheric Storage Tanks
Authors: Wang Jiajun , Weng Wenguo 
Published: December 2021

Abstract
Natural hazard events that trigger technical emergencies (Natech events), as a typical type of multi-hazard, have become a matter of growing concern. In particular, the occurrence of Natech events in industrial areas triggered a number of severe accidents. The present research aims at introducing a sound but simplified methodology to quickly and flexibly assess the vulnerability of atmospheric storage tanks to multiple natural disasters in Natech events. This method consists of 8 steps, relying on the simplified physical models of tank damage caused by natural disasters. The models of wind overturning tank and tank buckling caused by hail are proposed. In addition, the assessment process of tank vulnerability is demonstrated from two aspects: deterministic analysis and probabilistic analysis. The uncertain parameter set (UPS) proposed in the method and the Monte Carlo simulation method can help to purposefully analyze the impact of various parameters and this method is also a general method, which is also applicable to Natech events including other natural disasters or other types of storage tanks.
Effects of Targeted Temperature Management in Patients with Post-Cardiac Arrest Syndrome after an Out-Of-Hospital Cardiac Arrest Caused by Hanging: A Prospective Observational Cohort Study in Japan
Authors: Kakizaki Ryuichiro , Bunya Naofumi , Uemura Shuji , Kasai Takehiko , Sawamoto Keigo , Mizuno Hirotoshi , Narimatsu Eichi 
Published: December 2021

Abstract
Background: Targeted temperature management (TTM) is recommended for unconscious patients after a cardiac arrest. However, its effectiveness in patients with post-cardiac arrest syndrome (PCAS) by hanging remains unclear. Therefore, this study aimed to investigate the relationship between TTM and favorable neurological outcomes in patients with PCAS by hanging.Methods: This study was a retrospective analysis of the Japanese Association for Acute Medicine out-of-hospital cardiac arrest (OHCA) registry between June 2014 and December 2017 among patients with PCAS admitted to the hospitals after an OHCA caused by hanging. A multivariate logistic regression analysis was performed to estimate the propensity score and to predict whether patients with PCAS by hanging receive TTM. We compared patients with PCAS by hanging who received TTM (TTM group) and those who did not (non-TTM group) using propensity score analysis.Results: A total of 199 patients with PCAS by hanging were enrolled in this study. Among them, 43 were assigned to the TTM group and 156 to the non-TTM group. Logistic regression model adjusted for propensity score revealed that TTM was not associated with favorable neurological outcome at 1-month (adjusted odds ratio [OR]: 1.38, 95% confidence interval [CI]: 0.27–6.96). Moreover, no difference was observed in the propensity score-matched cohort (adjusted OR: 0, 73, 95% CI: 0.10–4.71) and in the inverse probability of treatment weighting-matched cohort (adjusted OR: 0.63, 95% CI: 0.15–2.69).Conclusions: TTM was not associated with increased favorable neurological outcomes at 1-month in patients with PCAS after OHCA by hanging.
ELaPro, a LOINC-Mapped Core Dataset for Top Laboratory Procedures of Eligibility Screening for Clinical Trials
Authors: Rafee Ahmed , Riepenhausen Sarah , Neuhaus Philipp , Meidt Alexandra , Dugas Martin , Varghese Julian 
Published: December 2021

Abstract
Background

Screening for eligible patients continues to pose a great challenge for many clinical trials. This has led to a rapidly growing interest in standardizing computable representations of eligibility criteria (EC) in order to develop tools that leverage data from electronic health record (EHR) systems. Although laboratory procedures (LP) represent a common entity of EC that is readily available and retrievable from EHR systems, there is a lack of interoperable data models for this entity of EC. A public, specialized data model that utilizes international, widely-adopted terminology for LP, e.g. LOINC, is much needed to support automated screening tools.
Objective

The aim of this study is to establish a core dataset for LP most frequently requested to recruit patients for clinical trials using LOINC terminology. Employing such a core dataset could enhance the interface between study feasibility platforms and EHR systems and significantly improve automatic patient recruitment.
Methods

We used a semi-automated approach to analyze 10516 UMLS-annotated screening forms from the Medical Data Models (MDM) portal’s data repository. An automated semantic analysis based on concept frequency is followed by a manual expert review performed by physicians to analyze complex recruitment-relevant concepts not amenable to automatic approach.
Results

Based on analysis of 138225 EC from 10516 screening forms, 55 laboratory procedures represented 77.87% of all UMLS laboratory concept occurrences identified in the selected EC forms. We identified 26413 unique UMLS concepts from 118 UMLS semantic types and covered the vast majority of MeSH disease domains.
Conclusions

Only a small set of LP cover the majority of laboratory concepts in screening EC. The results prove the feasibility of establishing a core dataset for a group of LP common to most EC forms. We present ELaPro (Eligibility Laboratory Procedures), a novel, LOINC-mapped, core dataset for the most frequent 55 LP requested in screening for clinical trials in multiple machine-readable data formats.
Intramyocardial Injected Human Umbilical Cord-Derived Mesenchymal Stem Cells (Hucmscs ) Contribute to the Recovery of Cardiac Function and the Migration of CD4+ T Cells into the Infarcted Heart via CCL5/CCR5 Signaling
Authors: Liu Jing , Liang Xiaoting , Li Mimi , Lin Fang , Ma Xiaoxue , Xin Yuanfeng , Meng Qingshu , Zhuang Rulin , Zhang Qingliu , Han Wei , He Zhiying , Zhou Xiaohui , Liu Zhongmin 
Published: December 2021

Abstract
Background: Human umbilical cord-derived mesenchymal stem cells (HucMSCs) have been recognized as a promising cell for treating myocardial infarction (MI). Inflammatory response post MI is critical in determining the cardiac function and subsequent adverse left ventricular remodeling. However, the local inflammatory effect of HucMSCs after intramyocardial injection in murine remains unclear. Methods: HucMSCs were cultured and transplanted into the mice after MI surgery. Cardiac function, angiogenesis, fibrosis and hypertrophy, and immune cells infiltration were evaluated between MI-N.S and MI-HucMSC groups. We detected the expression of inflammatory cytokines and their effects on CD4+ T cells migration. Results: HucMSCs treatment can significantly improve the cardiac function and some cells can survive at least 28 days after MI. Intramyocardial administration of HucMSCs also improved angiogenesis and alleviated cardiac fibrosis and hypertrophy. Moreover, we found the much higher numbers of CD4+ T cells and CD4+FoxP3+ regulatory T cells in the heart with HucMSC than that with N.S treatment on day 7 post MI. In addition, the protein level of C-C Motif Chemokine Ligand 5 (CCL5) greatly increased in the HucMSCs treated heart compared to the control. In vitro, HucMSCs inhibited CD4+ T cells migration and addition of CCL5 antibody or C-C Motif Chemokine receptor 5 (CCR5) antagonist significantly reversed this effect. Conclusion: These findings indicated that HucMSCs contributed to cardiac functional recovery and attenuated cardiac remodeling post MI. Intramyocardial injection of HucMSCs upregulated the CD4+FoxP3+ regulatory T cells and contributed to the migration of CD4+ T cells into the injured heart via CCL5/CCR5 pathway.
The Effects of a Single Blood Donation on the Lipid Profile, Iron Storage and Enzymatic Antioxidants
Authors: Kharaz Abdulrhman , Aljohani Abdulaziz , Almalki Abdullah , Alnawajha Mostafa , Alnozha Omar , Aloufi Faisal , Mirza Ahmed A. 
Published: December 2021

Abstract
Cardiovascular disease (CVD) is a global illness causing 31% of global mortality. Though many factors contribute to CVD, oxidative stress advances atherosclerosis through several complementary components, such as the initiation of lipid peroxidation by iron. Blood donation may decrease the risk of CVD due to reducing the iron level. Literature reported that blood donors have a lower risk of CVD, possibly due to the lower iron levels. Various effects of blood donation are involved in preventing type II diabetes. However, little is known of the exact mechanism of the benefits of blood donation. In this study, samples were collected from 33 healthy male participants pre- (1 day) and post-donation (1 day, 1, 2 and 3 weeks) and the effect of the blood donation on the iron, lipids and enzymatic antioxidants profiles were assessed. A repeated-measures ANOVA was used for comparing the quantitative variables between the visits. We found that the iron decreased significantly by week 1 (–25.3%). Ferritin decreased significantly at weeks 1, 2, and 3 (–26.3%, –40.3%, –36.7%, respectively). The superoxide dismutase increased significantly at post-donation day 1, weeks 1, 2, and 3 (17.9%,35.7%, 31.1%, 36.6%, respectively) and in correlation with time [r (165) = 0.50, P <0 .01]. Glutathione peroxide decreased significantly at week 1 (–25.0%). Glutathione reductase decreased significantly 1-day post donation (–5.7%) then increased over the next three weeks [r (165) = 0.3, P <0.01]. Finally, the lipids were significantly reduced 24 hours after the donation but not at week 1, 2 and 3. We conclude that blood donation, resulting in a lowered body iron concentration, is an effective way to increase superoxide dismutase and glutathione reductase, which prevent the initiation of lipid oxidation. Our results could be used to advocate for the benefits of blood donation. However, further studies are required to assess the role of blood donation in plaque formation and arteriosclerosis.
Anesthesia and Intubation of 10-Day Old C57BL/6J Mouse Pups for Cardiothoracic Surgery
Authors: Wu Jianxin , Nicks Amy M. , Skowno Justin J. , Feneley Michael P. , Iismaa Siiri E. , Graham Robert M. 
Published: December 2021

Abstract
Murine surgical models play an important role in preclinical research. Mechanistic insights into myocardial regeneration after cardiac injury may be gained from cardiothoracic surgery models in 0-14-day-old mice, the cardiomyocytes of which, unlike those of adults, retain proliferative capacity. Mouse pups up to 7 days old are effectively immobilized by hypothermia and do not require intubation for cardiothoracic surgery. Preadolescent (8-14-day-old) mouse pups, however, do require intubation, but this is challenging and there is little information regarding anesthesia to facilitate intubation. Empirical titration of ketamine/xylazine/atropine dosage regimens to body weight indicated the response to anesthesia of 10-day-old C57BL6/J mouse pups of different weights was non-linear, whereby doses of 20/4/0.12 mg/kg, 30/4/0.12 mg/kg and 50/6/0.18 mg/kg, facilitated intubation of pups weighing between 3.15-4.49 g (n=22), 4.50-5.49 g (n=20) and 5.50-8.10 g (n=20), respectively. Lower-body-weight pups required more intubation attempts than heavier pups (p<0.001). Survival post-intubation was inversely correlated with body weight (65, 70 and 80% for low-, mid- and high-weight groups, respectively, R2=0.995). For myocardial infarction surgery after intubation, a surgical plane of anesthesia was induced with 4.5% isoflurane in 100% oxygen and maintained with 2% isoflurane in 100% oxygen. Survival post-surgery was similar for the three weight groups at 92%, 86% and 88% (p=0.91). Together with refinements in animal handling practices for intubation and surgery, and to minimize cannibalization by the dam post-surgery, overall survival for the entire procedure (intubation plus surgery) was inversely correlated with body weight (55%, 60% and 70% for low-, mid- and high-weight groups, respectively, R2=0.978). Given the difficulty encountered with intubation of 10-day old pups and the associated high mortality, we recommend cardiothoracic surgery in 10-day-old pups be restricted to those weighing at least 5.5 g.