bluuebunny/crossref_metadata_2025_split huggingface dataset:
Improved pentamethine cyanine nanosensors for optoacoustic imaging of pancreatic cancer
Authors: Laramie Matthew D. , Fouts Benjamin L. , MacCuaig William M. , Buabeng Emmanuel , Jones Meredith A. , Mukherjee Priyabrata , Behkam Bahareh , McNally Lacey R. , Henary Maged 
Published: February 2021

AbstractOptoacoustic imaging is a new biomedical imaging technology with clear benefits over traditional optical imaging and ultrasound. While the imaging technology has improved since its initial development, the creation of dedicated contrast agents for optoacoustic imaging has been stagnant. Current exploration of contrast agents has been limited to standard commercial dyes that have already been established in optical imaging applications. While some of these compounds have demonstrated utility in optoacoustic imaging, they are far from optimal and there is a need for contrast agents with tailored optoacoustic properties. The synthesis, encapsulation within tumor targeting silica nanoparticles and applications in in vivo tumor imaging of optoacoustic contrast agents are reported.
Volume-based algorithm of lung dose optimization in novel dynamic arc radiotherapy for esophageal cancer
Authors: Lin Kuan-Heng , Hsu Chen-Xiong , Wang Shan-Ying , Mok Greta S. P. , Chang Chiu-Han , Tien Hui-Ju , Shueng Pei-Wei , Wu Tung-Hsin 
Published: February 2021

AbstractThis study aims to develop a volume-based algorithm (VBA) that can rapidly optimize rotating gantry arc angles and predict the lung V5 preceding the treatment planning. This phantom study was performed in the dynamic arc therapy planning systems for an esophageal cancer model. The angle of rotation of the gantry around the isocenter as defined as arc angle (θA), ranging from 360° to 80° with an interval of 20°, resulting in 15 different θA of treatment plans. The corresponding predicted lung V5 was calculated by the VBA, the mean lung dose, lung V5, lung V20, mean heart dose, heart V30, the spinal cord maximum dose and conformity index were assessed from dose–volume histogram in the treatment plan. Correlations between the predicted lung V5 and the dosimetric indices were evaluated using Pearson’s correlation coefficient. The results showed that the predicted lung V5 and the lung V5 in the treatment plan were positively correlated (r = 0.996, p < 0.001). As the θA decreased, lung V5, lung V20, and the mean lung dose decreased while the mean heart dose, V30 and the spinal cord maximum dose increased. The V20 and the mean lung dose also showed high correlations with the predicted lung V5 (r = 0.974, 0.999, p < 0.001). This study successfully developed an efficient VBA to rapidly calculate the θA to predict the lung V5 and reduce the lung dose, with potentials to improve the current clinical practice of dynamic arc radiotherapy.
Testing for phylogenetic signal in claws suggests great influence of ecology on Caribbean intertidal arthropods (Acari, Oribatida)
Authors: Kerschbaumer Michaela , Pfingstl Tobias 
Published: February 2021

AbstractClaws are common biological attachment devices that can be found in a wide variety of animal groups. Their curvature and size are supposed to be parameters related to ecological aspects. Mites, known as very small arthropods, occupy a wide range of ecological niches and are a perfect model system to investigate correlations of claw morphology with ecology. There is only one study regarding this question in littoral mites but the phylogenetic impact, which plays an important role in the evolution of morphological traits, was not tested. We investigated claw shapes of different Caribbean populations of five species showing different substrate/habitat preferences. We used geometric morphometrics to quantify claw shape and tested for phylogenetic signal within this morphological trait. Even in closely related populations, we found clear claw shapes for hard versus soft substrate, confirming previous findings. Surprisingly, we found no phylogenetic signal within the trait, which demonstrates that ecology (different surfaces and substrates) has acted as one of the primary selective forces in the diversification of claw shapes. Considering that the basic claw design may be the same in the majority of arthropods, our results have important implications for further investigations of claw morphology and its ecological relevance within this phylum.
A biomechanical study of load carriage by two paired subjects in response to increased load mass
Authors: Fumery Guillaume , Turpin Nicolas A. , Claverie Laetitia , Fourcassié Vincent , Moretto Pierre 
Published: February 2021

AbstractThe biomechanics of load carriage has been studied extensively with regards to single individuals, yet not so much with regards to collective transport. We investigated the biomechanics of walking in 10 paired individuals carrying a load that represented 20%, 30%, or 40% of the aggregated body-masses. We computed the energy recovery rate at the center of mass of the system consisting of the two individuals plus the carried load in order to test to what extent the pendulum-like behavior and the economy of the gait were affected. Joint torque was also computed to investigate the intra- and inter-subject strategies occurring in response to this. The ability of the subjects to move the whole system like a pendulum appeared rendered obvious through shortened step length and lowered vertical displacements at the center of mass of the system, while energy recovery rate and total mechanical energy remained constant. In parallel, an asymmetry of joint moment vertical amplitude and coupling among individuals in all pairs suggested the emergence of a leader/follower schema. Beyond the 30% threshold of increased load mass, the constraints at the joint level were balanced among individuals leading to a degraded pendulum-like behavior.
Screening of metabolic modulators identifies new strategies to target metabolic reprogramming in melanoma
Authors: Abildgaard Cecilie , Rizza Salvatore , Christiansen Helle , Schmidt Steffen , Dahl Christina , Abdul-Al Ahmad , Christensen Annette , Filomeni Giuseppe , Guldberg Per 
Published: February 2021

AbstractThe prognosis of metastatic melanoma remains poor due to de novo or acquired resistance to immune and targeted therapies. Previous studies have shown that melanoma cells have perturbed metabolism and that cellular metabolic pathways represent potential therapeutic targets. To support the discovery of new drug candidates for melanoma, we examined 180 metabolic modulators, including phytochemicals and anti-diabetic compounds, for their growth-inhibitory activities against melanoma cells, alone and in combination with the BRAF inhibitor vemurafenib. Two positive hits from this screen, 4-methylumbelliferone (4-MU) and ursolic acid (UA), were subjected to validation and further characterization. Metabolic analysis showed that 4-MU affected cellular metabolism through inhibition of glycolysis and enhanced the effect of vemurafenib to reduce the growth of melanoma cells. In contrast, UA reduced mitochondrial respiration, accompanied by an increase in the glycolytic rate. This metabolic switch potentiated the growth-inhibitory effect of the pyruvate dehydrogenase kinase inhibitor dichloroacetate. Both drug combinations led to increased production of reactive oxygen species, suggesting the involvement of oxidative stress in the cellular response. These results support the potential use of metabolic modulators for combination therapies in cancer and may encourage preclinical validation and clinical testing of such treatment strategies in patients with metastatic melanoma.
A streamlined clinical metagenomic sequencing protocol for rapid pathogen identification
Authors: Jia Xiaofang , Hu Lvyin , Wu Min , Ling Yun , Wang Wei , Lu Hongzhou , Yuan Zhenghong , Yi Zhigang , Zhang Xiaonan 
Published: February 2021

AbstractMetagenomic next-generation sequencing (mNGS) holds promise as a diagnostic tool for unbiased pathogen identification and precision medicine. However, its medical utility depends largely on assay simplicity and reproducibility. In the current study, we aimed to develop a streamlined Illumina and Oxford Nanopore-based DNA/RNA library preparation protocol and rapid data analysis pipeline. The Illumina sequencing-based mNGS method was first developed and evaluated using a set of samples with known aetiology. Its sensitivity for RNA viruses (influenza A, H1N1) was < 6.4 × 102 EID50/mL, and a good correlation between viral loads and mapped reads was observed. Then, the rapid turnaround time of Nanopore sequencing was tested by sequencing influenza A virus and adenoviruses. Furthermore, 11 respiratory swabs or sputum samples pre-tested for a panel of pathogens were analysed, and the pathogens identified by Illumina sequencing showed 81.8% concordance with qPCR results. Additional sequencing of cerebrospinal fluid (CSF) samples from HIV-1-positive patients with meningitis/encephalitis detected HIV-1 RNA and Toxoplasma gondii sequences. In conclusion, we have developed a simplified protocol that realizes efficient metagenomic sequencing of a variety of clinical samples and pathogen identification in a clinically meaningful time frame.
EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control
Authors: Marzahl Christian , Aubreville Marc , Bertram Christof A. , Maier Jennifer , Bergler Christian , Kröger Christine , Voigt Jörn , Breininger Katharina , Klopfleisch Robert , Maier Andreas 
Published: February 2021

AbstractIn many research areas, scientific progress is accelerated by multidisciplinary access to image data and their interdisciplinary annotation. However, keeping track of these annotations to ensure a high-quality multi-purpose data set is a challenging and labour intensive task. We developed the open-source online platform EXACT (EXpert Algorithm Collaboration Tool) that enables the collaborative interdisciplinary analysis of images from different domains online and offline. EXACT supports multi-gigapixel medical whole slide images as well as image series with thousands of images. The software utilises a flexible plugin system that can be adapted to diverse applications such as counting mitotic figures with a screening mode, finding false annotations on a novel validation view, or using the latest deep learning image analysis technologies. This is combined with a version control system which makes it possible to keep track of changes in the data sets and, for example, to link the results of deep learning experiments to specific data set versions. EXACT is freely available and has already been successfully applied to a broad range of annotation tasks, including highly diverse applications like deep learning supported cytology scoring, interdisciplinary multi-centre whole slide image tumour annotation, and highly specialised whale sound spectroscopy clustering.
Quantifying cell death induced by doxorubicin, hyperthermia or HIFU ablation with flow cytometry
Authors: Lyon Paul Christopher , Suomi Visa , Jakeman Philip , Campo Leticia , Coussios Constantin , Carlisle Robert 
Published: February 2021

AbstractTriggered release and targeted drug delivery of potent anti-cancer agents using hyperthermia-mediated focused-ultrasound (FUS) is gaining momentum in the clinical setting. In early phase studies, tissue biopsy samples may be harvested to assess drug delivery efficacy and demonstrate lack of instantaneous cell death due to FUS exposure. We present an optimised tissue cell recovery method and a cell viability assay, compatible with intra-cellular doxorubicin. Flow cytometry was used to determine levels of cell death with suspensions comprised of: (i) HT29 cell line exposed to hyperthermia (30 min at 47 °C) and/or doxorubicin, or ex-vivo bovine liver tissue exposed to (ii) hyperthermia (up to 2 h at 45 °C), or (iii) ablative high intensity FUS (HIFU). Flow cytometric analysis revealed maximal cell death in HT29 receiving both heat and doxorubicin insults and increases in both cell granularity (p < 0.01) and cell death (p < 0.01) in cells recovered from ex-vivo liver tissue exposed to hyperthermia and high pressures of HIFU (8.2 MPa peak-to-peak free-field at 1 MHz) relative to controls. Ex-vivo results were validated with microscopy using pan-cytokeratin stain. This rapid, sensitive and highly quantitative cell-viability method is applicable to the small masses of liver tissue typically recovered from a standard core biopsy (5–20 mg) and may be applied to tissues of other histological origins including immunostaining.
Using protein turnover to expand the applications of transcriptomics
Authors: Smail Marissa A. , Reigle James K. , McCullumsmith Robert E. 
Published: February 2021

AbstractRNA expression and protein abundance are often at odds when measured in parallel, raising questions about the functional implications of transcriptomics data. Here, we present the concept of persistence, which attempts to address this challenge by combining protein half-life data with RNA expression into a single metric that approximates protein abundance. The longer a protein’s half-life, the more influence it can have on its surroundings. This data offers a valuable opportunity to gain deeper insight into the functional meaning of transcriptome changes. We demonstrate the application of persistence using schizophrenia (SCZ) datasets, where it greatly improved our ability to predict protein abundance from RNA expression. Furthermore, this approach successfully identified persistent genes and pathways known to have impactful changes in SCZ. These results suggest that persistence is a valuable metric for improving the functional insight offered by transcriptomics data, and extended application of this concept could advance numerous research fields.
Factors associated with fear of childbirth among Polish pregnant women
Authors: Ilska Michalina , Brandt-Salmeri Anna , Kołodziej-Zaleska Anna , Banaś Ewa , Gelner Hanna , Cnota Wojciech 
Published: February 2021

AbstractThe purpose of our study was to elucidate the association between obstetric and psychological factors and fear of childbirth (FOC) during the third trimester of pregnancy and to identify women at risk of severe FOC in Poland. An additional goal of the study was to verify the Polish version of the Wijma Delivery Expectancy Questionnaire (W-DEQ) and to establish its psychometric characteristics. Cross-sectional study with a total of 359 women recruited during routine visits to an antenatal clinic in Poland during the third trimester (≥ 27 weeks gestation). The survey included obstetric details (parity, obstetric history and preferred mode of delivery), and standardized psychological measures: the W-DEQ (fear of childbirth) and the EPDS (depressive symptoms). We demonstrated the satisfactory psychometric properties of the Polish version of the W-DEQ. Our findings confirm the one-factor structure found by the authors of the original version of the scale. A greater FOC was reported by women with unplanned pregnancies, women whose preferred mode of delivery was a cesarean section, and women who had previously undergone psychiatric treatment. The risk factors for severe FOC were depression, unplanned pregnancy or parity, and disagreement with the birth plan proposed by the obstetrician. The W-DEQ is a widely used, valid instrument for the assessment of FOC in pregnant women and can be used in Poland. Findings support the key role of obstetric and psychological variables in predicting fear of childbirth.
Pterostilbene inhibits gallbladder cancer progression by suppressing the PI3K/Akt pathway
Authors: Tong Chenhao , Wang Yali , Li Jiandong , Cen Wenda , Zhang Weiguang , Zhu Zhiyang , Yu Jianhua , Lu Baochun 
Published: February 2021

AbstractGallbladder cancer is the most common malignant tumor of the biliary system and is characterized by difficulty to diagnose in early stages, a high degree of malignancy, and poor prognosis. Finding new drugs may improve the prognosis for this dismal cancer. Herein, we investigated the potential application of pterostilbene (PTS) against gallbladder cancer in vivo and in vitro. PTS potently inhibited cell proliferation, migration and invasion of gallbladder cancer cells. Moreover, PTS also had a function of inducing apoptosis in vitro. Meanwhile, PTS reversed EMT with a correlated inhibition of PI3K/Akt activation. Tumor xenograft models showed that PTS inhibited tumor growth and had low toxicity in vivo, which were consistent with the in vitro data. These findings indicate that PTS arrests cell growth through inhibition of PI3K/AKT signaling and is a potential drug for the therapy of gallbladder cancer.
Anterior distal tibial plafond-plasty for the treatment of posttraumatic ankle osteoarthritis with anterior translation of the talus
Authors: Li Xingchen , Xu Yang , Guo Changjun , Yang Chonglin , Zhu Yuan , Xu Xiangyang 
Published: February 2021

AbstractPosttraumatic ankle osteoarthritis (OA) represents a significant challenge to orthopedic surgeons, especially in cases of anterior talar translation and concomitant impaction of the anterior distal tibial plafond. The aim of this study was to evaluate the clinical outcomes of an intra-articular osteotomy for the management of these patients. A total of 21 patients meeting our criteria were retrospectively reviewed. Sixteen patients sustained initial pilon fractures, while five patients had Weber type C ankle fractures. Anterior distal tibial plafond-plasty was performed to address the impaction and anterior translation of the talus. The American Orthopedic Foot and Ankle Society (AOFAS) hindfoot score and visual analog scale (VAS) score were utilized as clinical outcomes. The lateral talar station (LTS), tibial lateral surface (TLS) angle, tibial anterior surface angle and talocrural angle were evaluated pre- and postoperatively. The modified Kellgren-Lawrence score was used for the evaluation of sagittal ankle OA. The average age at surgery was 35 years, and the average follow-up duration was 34 months. The AOFAS hindfoot score increased from 26 to 71 (p < 0.01), and the VAS score improved from 7 to 2 (p < 0.01). The LTS improved from 9.0 to 2.3 mm (p < 0.01), and the TLS angle improved from 72° to 81° (p < 0.01). Of the 21 patients, 18 showed improvement in or no worsening of ankle OA on the sagittal plane, while 3 developed advanced ankle OA. A congruent ankle joint on the sagittal plane could be achieved by anterior distal tibial plafond-plasty. This is a valuable treatment option for the salvage of posttraumatic ankle OA with anterior translation of the talus.
Clinical correlates of anti-SARS-CoV-2 antibody profiles in Spanish COVID-19 patients from a high incidence region
Authors: Markewitz Robert , Torge Antje , Wandinger Klaus-Peter , Pauli Daniela , Franke Andre , Bujanda Luis , Marimón José Maria , Banales Jesus M. , Gutierrez-Stampa María A. , Nafría Beatriz , Junker Ralf 
Published: February 2021

AbstractLaboratory testing for the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) consists of two pillars: the detection of viral RNA via rt-PCR as the diagnostic gold standard in acute cases, and the detection of antibodies against SARS-CoV-2. However, concerning the latter, questions remain about their diagnostic and prognostic value and it is not clear whether all patients develop detectable antibodies. We examined sera from 347 Spanish COVID-19 patients, collected during the peak of the epidemic outbreak in Spain, for the presence of IgA and IgG antibodies against SARS-CoV-2 and evaluated possible associations with age, sex and disease severity (as measured by duration of hospitalization, kind of respiratory support, treatment in ICU and death). The presence and to some degree the levels of anti-SARS-CoV-2 antibodies depended mainly on the amount of time between onset of symptoms and the collection of serum. A subgroup of patients did not develop antibodies at the time of sample collection. Compared to the patients that did, no differences were found. The presence and level of antibodies was not associated with age, sex, duration of hospitalization, treatment in the ICU or death. The case-fatality rate increased exponentially with older age. Neither the presence, nor the levels of anti-SARS-CoV-2 antibodies served as prognostic markers in our cohort. This is discussed as a possible consequence of the timing of the sample collection. Age is the most important risk factor for an adverse outcome in our cohort. Some patients appear not to develop antibodies within a reasonable time frame. It is unclear, however, why that is, as these patients differ in no respect examined by us from those who developed antibodies.
Colonization by arbuscular mycorrhizal fungi improves salinity tolerance of eucalyptus (Eucalyptus camaldulensis) seedlings
Authors: Klinsukon Chaiya , Lumyong Saisamorn , Kuyper Thomas W. , Boonlue Sophon 
Published: February 2021

AbstractSoil salinity affects soil quality and reduces plant performance. Arbuscular mycorrhizal fungi (AMF) can enhance the tolerance of plants under salinity stress. Cultivation of eucalyptus (Eucalyptus camaldulensis), which exhibits high water use efficiency, is possible in saline areas to produce raw materials for the pulp industry. We determined the effects of arbuscular mycorrhizal fungi (AMF) on the growth and survival of eucalyptus seedlings under saline conditions. Three different clones of eucalyptus seedlings were pre-inoculated with three salt-tolerant AMF species, namely Glomus sp.2, Gigaspora albida and G. decipiens, and without pre-inoculation. The seedlings were grown in a greenhouse for 45 days. They were then transferred to individual pots, filled with field soil and subsequently treated with NaCl solution until electro-conductivity (EC) reached 10, 15 and 20 dS m−1. They were watered for 90 days under nursery conditions. The results show that increased salinity levels reduced plant performance, fractional AMF root colonization, spore number, and eucalypt K/Na ratio. AMF significantly increased chlorophyll and decreased leaf proline concentrations by more than 50% and 20% respectively and increased the K/Na ratio three- to six-fold compared with non-inoculated plants. Pre-inoculation with AMF before outplanting also improved plant performance by more than 30% under salinity stress compared to non-inoculated plants. We conclude that AMF can alleviate the negative impacts of salinity on plant physiological and biochemical parameters.
Relationship and Social Network Change in People With Impaired Social Cognition Post Right Hemisphere Stroke
Authors: Hewetson Ronelle , Cornwell Petrea , Shum David H. K. 
Published: February 2021

PurposeThis article investigated relationship and social network change in the presence of a social cognition impairment post right hemisphere (RH) stroke. Impaired emotion perception and inferential reasoning are sources of interpersonal difficulty in people with social cognition impairment after traumatic brain injury. People with an RH stroke have also been identified as vulnerable to interpersonal relationship change. However, the influence of impairments in particular domains of communication or cognition on relationship and social network maintenance is yet to be explored.MethodA multiple-case study methodology allowed for testing of theoretically developed propositions by exploring social networks and relationships within and between seven participant–proxy dyads. Purposeful recruitment was based on first-onset RH stroke and impaired social cognition, as determined by The Awareness of Social Inference Test.ResultsSocial network size reduction (71.4%,n= 5) and interpersonal relationship change (85.7%,n= 6) were attributed to altered communication style, impairments in social cognition, and reduced insight and/or motivation. The spouse emerged as a facilitator of social engagement.ConclusionThis study contributes to our understanding of the challenges experienced by people with impaired social cognition post RH stroke in maintaining relationships and their social networks.