bluuebunny/crossref_metadata_2025_split huggingface dataset:
The molecular tumor burden index as a response evaluation criterion in breast cancer
Authors: Yi Zongbi , Ma Fei , Rong Guohua , Liu Binliang , Guan Yanfang , Li Jin , Sun Xiaoying , Wang Wenna , Guan Xiuwen , Mo Hongnan , Wang Jiani , Qian Haili , Xu Binghe 
Published: July 2021

AbstractCirculating tumor DNA (ctDNA) is a potential biomarker of prognosis and therapeutic response. We conducted this study to explore the role of the molecular tumor burden index (mTBI) in ctDNA as a therapeutic response and prognostic biomarker in a larger cohort prospective phase III randomized multicenter study. We collected 291 plasma samples from 125 metastatic breast cancer patients from the CAMELLIA study (NCT01917279). Target-capture deep sequencing of 1021 genes was performed to detect somatic variants in ctDNA from the plasma samples. The pretreatment mTBI value was correlated with tumor burden (P = 0.025). Patients with high-level pretreatment mTBI had shorter overall survival than patients with low-level pretreatment mTBI, and the median overall survival was 40.9 months and 68.4 months, respectively (P = 0.011). Patients with mTBI decrease to less than 0.02% at the first tumor evaluation had longer progression-free survival and overall survival (P < 0.001 and P = 0.007, respectively). The mTBI has good sensitivity to identify complete response/partial response and progressive disease based on computed tomography scans (88.5% and 87.5%, respectively). The patients classified as molecular responders had longer progression-free survival and overall survival than the nonmolecular responders in the overall cohort (P < 0.001 and P = 0.036, respectively), as well as in the cohort in which computed tomography scans were defined as representing stable disease (P = 0.027 and P = 0.015, respectively). The mTBI in ctDNA detected in liquid biopsies is a potential biomarker of therapeutic response and prognosis in patients with metastatic breast cancer.
The signal pathways and treatment of cytokine storm in COVID-19
Authors: Yang Lan , Xie Xueru , Tu Zikun , Fu Jinrong , Xu Damo , Zhou Yufeng 
Published: July 2021

AbstractThe Coronavirus Disease 2019 (COVID-19) pandemic has become a global crisis and is more devastating than any other previous infectious disease. It has affected a significant proportion of the global population both physically and mentally, and destroyed businesses and societies. Current evidence suggested that immunopathology may be responsible for COVID-19 pathogenesis, including lymphopenia, neutrophilia, dysregulation of monocytes and macrophages, reduced or delayed type I interferon (IFN-I) response, antibody-dependent enhancement, and especially, cytokine storm (CS). The CS is characterized by hyperproduction of an array of pro-inflammatory cytokines and is closely associated with poor prognosis. These excessively secreted pro-inflammatory cytokines initiate different inflammatory signaling pathways via their receptors on immune and tissue cells, resulting in complicated medical symptoms including fever, capillary leak syndrome, disseminated intravascular coagulation, acute respiratory distress syndrome, and multiorgan failure, ultimately leading to death in the most severe cases. Therefore, it is clinically important to understand the initiation and signaling pathways of CS to develop more effective treatment strategies for COVID-19. Herein, we discuss the latest developments in the immunopathological characteristics of COVID-19 and focus on CS including the current research status of the different cytokines involved. We also discuss the induction, function, downstream signaling, and existing and potential interventions for targeting these cytokines or related signal pathways. We believe that a comprehensive understanding of CS in COVID-19 will help to develop better strategies to effectively control immunopathology in this disease and other infectious and inflammatory diseases.
Automated and rapid detection of cancer in suspicious axillary lymph nodes in patients with breast cancer
Authors: Li Juanjuan , Downs Bradley M. , Cope Leslie M. , Fackler Mary Jo , Zhang Xiuyun , Song Chuan-gui , VandenBussche Christopher , Zhang Kejing , Han Yong , Liu Yufei , Tulac Suzana , Venkatesan Neesha , de Guzman Timothy , Chen Chuang , Lai Edwin W. , Yuan Jingping , Sukumar Saraswati 
Published: July 2021

AbstractPreoperative staging of suspicious axillary lymph nodes (ALNs) allows patients to be triaged to ALN dissection or to sentinel lymph node biopsy (SLNB). Ultrasound-guided fine needle aspiration (FNA) and cytology of ALN is moderately sensitive but its clinical utility relies heavily on the cytologist’s experience. We proposed that the 5-h automated GeneXpert system-based prototype breast cancer detection assay (BCDA) that quantitatively measures DNA methylation in ten tumor-specific gene markers could provide a facile, accurate test for detecting cancer in FNA of enlarged lymph nodes. We validated the assay in ALN-FNA samples from a prospective study of patients (N = 230) undergoing SLNB. In a blinded analysis of 218 evaluable LN-FNAs from 108 malignant and 110 benign LNs by histology, BCDA displayed a sensitivity of 90.7% and specificity of 99.1%, achieving an area under the ROC curve, AUC of 0.958 (95% CI: 0.928–0.989; P < 0.0001). Next, we conducted a study of archival FNAs of ipsilateral palpable LNs (malignant, N = 72, benign, N = 53 by cytology) collected in the outpatient setting prior to neoadjuvant chemotherapy (NAC). Using the ROC-threshold determined in the prospective study, compared to cytology, BCDA achieved a sensitivity of 94.4% and a specificity of 92.5% with a ROC-AUC = 0.977 (95% CI: 0.953–1.000; P < 0.0001). Our study shows that the automated assay detects cancer in suspicious lymph nodes with a high level of accuracy within 5 h. This cancer detection assay, scalable for analysis to scores of LN FNAs, could assist in determining eligibility of patients to different treatment regimens.
Drop tower tests of Taiji-1 inertial sensor substitute
Authors: Min Jian , Wang Zuo-Lei , Li Yun-Peng , Tao Wen-Ze , Li Cun-Hui , Lei Jun-Gang , Xi Dong-Xue , Fan Da , Wang Jun-Biao 
Published: July 2021

AbstractTaiji-1, which is the first technical verification satellite of China’s Space Gravitational Wave Detection Program, was successfully launched on August 31, 2019. The mission aimed to investigate the key technologies used in space gravitational wave detection. The inertial sensor, which was one of the main payloads, measured the residual acceleration of the satellite, and verified the drag-free control technology. Its performance was crucial to the success of the Taiji-1 mission. To ensure its performance in orbit, the inertial sensor was fully evaluated prior to launch. Owing to the gravitational acceleration on the ground, it is impossible to verify all the properties of the inertial sensor in a routine laboratory. A feasible method to conduct such tests is to use a drop tower. To guarantee the safety of the inertial sensor, a substitute was used with similar structure and circuit design. A total of 20 falls in three groups were completed, a set of research methods was established, and the importance of conducting simulations before the drop tests was verified. For the first time, the switch of different circuit gains in a drop tower test has been achieved and the National Microgravity Laboratory of China (NMLC) drop tower’s residual accelerations in three dimensions were measured. The results demonstrated that the microgravity level of the drop tower can reach about 58 μg0in the fall direction and 13 μg0along the horizontal axes.
Low temperature chemical sintering of inkjet-printed Zn nanoparticles for highly conductive flexible electronic components
Authors: Majee Subimal , Karlsson Mikael C. F. , Wojcik Pawel Jerzy , Sawatdee Anurak , Mulla Mohammad Yusuf , Alvi Naveed ul Hassan , Dyreklev Peter , Beni Valerio , Nilsson David 
Published: July 2021

AbstractThis study illustrates an innovative way to fabricate inkjet-printed tracks by sequential printing of Zn nanoparticle ink and curing ink for low temperature in situ chemical sintering. Employing chemical curing in place of standard sintering methods leads to the advantages of using flexible substrates that may not withstand the high thermal budgets of the standard methods. A general formulation engineering method is adopted to produce highly concentrated Zn ink which is cured by inkjet printing an over-layer of aqueous acetic acid which is the curing agent. The experimental results reveal that a narrow window of acid concentration of curing ink plays a crucial role in determining the electrical properties of the printed Zn nanoparticles. Highly conductive (~105 S m−1) and mechanically flexible printed Zn features are achieved. In addition, from systematic material characterization, we obtain an understanding of the curing mechanism. Finally, a touch sensor circuit is demonstrated involving all-Zn printed conductive tracks.
Foldable and washable textile-based OLEDs with a multi-functional near-room-temperature encapsulation layer for smart e-textiles
Authors: Jeong So Yeong , Shim Hye Rin , Na Yunha , Kang Ki Suk , Jeon Yongmin , Choi Seungyeop , Jeong Eun Gyo , Park Yong Cheon , Cho Ha-Eun , Lee Junwoo , Kwon Jeong Hyun , Im Sung Gap , Choi Kyung Cheol 
Published: July 2021

AbstractWearable electronic devices are being developed because of their wide potential applications and user convenience. Among them, wearable organic light emitting diodes (OLEDs) play an important role in visualizing the data signal processed in wearable electronics to humans. In this study, textile-based OLEDs were fabricated and their practical utility was demonstrated. The textile-based OLEDs exhibited a stable operating lifetime under ambient conditions, enough mechanical durability to endure the deformation by the movement of humans, and washability for maintaining its optoelectronic properties even in water condition such as rain, sweat, or washing. In this study, the main technology used to realize this textile-based OLED was multi-functional near-room-temperature encapsulation. The outstanding impermeability of TiO2 film deposited at near-room-temperature was demonstrated. The internal residual stress in the encapsulation layer was controlled, and the device was capped by highly cross-linked hydrophobic polymer film, providing a highly impermeable, mechanically flexible, and waterproof encapsulation.
Alpha dose rate and decay dose impacts on the long-term alteration of HLW nuclear glasses
Authors: Tribet Magaly , Marques Caroline , Mougnaud Sarah , Broudic Véronique , Jegou Christophe , Peuget Sylvain 
Published: July 2021

AbstractIn the prospect of deep geological disposal, the long-term behavior of high-level nuclear glasses has to be investigated regarding alpha radiation induced by long-life minor actinides. The present study focuses on the effects of alpha radiation on the long-term chemical reactivity of R7T7-type glasses, by separately considering the alpha dose rate and the alpha decay dose. Old SON68 glasses doped with 238/239PuO2 or 244CmO2 were studied to simulate high alpha dose rates corresponding to an early water ingress and a high level of alpha decay doses corresponding to long-term disposal conditions. A part of the 238/239Pu-doped glass block was annealed to fully recover the irradiation-induced damage accumulated since the glass was fabricated and to dissociate the effect of the alpha dose rate from that of the alpha decay dose. The glasses were then leached under static conditions at 90 °C for several years. The results showed that the residual alteration rate is not affected by the alpha dose rate over a wide range of dose rate values expected under disposal conditions: this glass remained relatively insensitive to the alpha radiolysis phenomena at the glass–water interface. However, over the duration of the experiments, the residual alteration rate of the damaged 238/239Pu-doped glass was enhanced compared to that of the annealed glass. This result is in agreement with those obtained on the 244Cm-doped glass and with reported values in the literature on simplified externally irradiated glasses, indicating that the ballistic effects of the recoil nuclei are responsible for this increase in the residual alteration rate.
Electric vehicle charging stations in the workplace with high-resolution data from casual and habitual users
Authors: Asensio Omar Isaac , Lawson M. Cade , Apablaza Camila Z. 
Published: July 2021

AbstractProblems of poor network interoperability in electric vehicle (EV) infrastructure, where data about real-time usage or consumption is not easily shared across service providers, has plagued the widespread analysis of energy used for transportation. In this article, we present a high-resolution dataset of real-time EV charging transactions resolved to the nearest second over a one-year period at a multi-site corporate campus. This includes 105 charging stations across 25 different facilities operated by a single firm in the U.S. Department of Energy Workplace Charging Challenge. The high-resolution data has 3,395 real-time transactions and 85 users with both paid and free sessions. The data has been expanded for re-use such as identifying charging behaviour and segmenting user groups by frequency of usage, stage of adoption, and employee type. Potential applications include but are not limited to simulating and parameterizing energy demand models; investigating flexible charge scheduling and optimal power flow problems; characterizing transportation emissions and electric mobility patterns at high temporal resolution; and evaluating characteristics of early adopters and lead user innovation.
New evidence of arsenic translocation and accumulation in Pteris vittata from real-time imaging using positron-emitting 74As tracer
Authors: Kohda Yi Huang-Takeshi , Qian Zhaojie , Chien Mei-Fang , Miyauchi Keisuke , Endo Ginro , Suzui Nobuo , Yin Yong-Gen , Kawachi Naoki , Ikeda Hayato , Watabe Hiroshi , Kikunaga Hidetoshi , Kitajima Nobuyuki , Inoue Chihiro 
Published: July 2021

AbstractPteris vittata is an arsenic (As) hyperaccumulator plant that accumulates a large amount of As into fronds and rhizomes (around 16,000 mg/kg in both after 16 weeks hydroponic cultivation with 30 mg/L arsenate). However, the sequence of long-distance transport of As in this hyperaccumulator plant is unclear. In this study, we used a positron-emitting tracer imaging system (PETIS) for the first time to obtain noninvasive serial images of As behavior in living plants with positron-emitting 74As-labeled tracer. We found that As kept accumulating in rhizomes as in fronds of P. vittata, whereas As was retained in roots of a non-accumulator plant Arabidopsis thaliana. Autoradiograph results of As distribution in P. vittata showed that with low As exposure, As was predominantly accumulated in young fronds and the midrib and rachis of mature fronds. Under high As exposure, As accumulation shifted from young fronds to mature fronds, especially in the margin of pinna, which resulted in necrotic symptoms, turning the marginal color to gray and then brown. Our results indicated that the function of rhizomes in P. vittata was As accumulation and the regulation of As translocation to the mature fronds to protect the young fronds under high As exposure.
Spatiotemporal effects of urban sprawl on habitat quality in the Pearl River Delta from 1990 to 2018
Authors: Wu Jiansheng , Li Xuechen , Luo Yuhang , Zhang Danni 
Published: July 2021

AbstractSince the implementation of the Chinese economic reforms. The habitat quality of coastal has gradually deteriorated with economic development, but the concept of "ecological construction" has slowed the negative trend. For quantitative analysis of the correlation between the Pearl River Delta urban expansion and changes in habitat quality under the influence of the policy, we first analyzed the habitat quality change based on the InVEST model and then measured the impact of construction land expansion on the habitat quality through habitat quality change index (HQCI) and contribution index (CI) indicators. Finally, the correlation between urbanization level and habitat quality was evaluated using geographically weighted regression (GWR) and the Self-organizing feature mapping neural network (SOFM). The results indicated that: (1) during the study period from 2000 to 2020, habitat quality declined due to urban sprawl, indicating a deterioration of ecological structure and function, and the decrease was most significant from 2000 to 2010. (2) The urbanization index had a negative effect on the habitat quality, but the negative effect have improved after 2000, reflecting the positive effect of policies such as "ecological civilization construction" (3) The implementation degree of ecological civilization varies greatly among cities in the study area: Shenzhen, Dongguan, Foshan, and Zhongshan have the best level of green development. These results reflect the positive role of policies in the prevention of damage to habitat quality caused by economic development and provide a reference for the formulation of sustainable urban development policies with spatial differences.
Fecal sample collection methods and time of day impact microbiome composition and short chain fatty acid concentrations
Authors: Jones Jacquelyn , Reinke Stacey N , Ali Alishum , Palmer Debra J , Christophersen Claus T. 
Published: July 2021

AbstractAssociations between the human gut microbiome and health outcomes continues to be of great interest, although fecal sample collection methods which impact microbiome studies are sometimes neglected. Here, we expand on previous work in sample optimization, to promote high quality microbiome data. To compare fecal sample collection methods, amplicons from the bacterial 16S rRNA gene (V4) and fungal (ITS2) region, as well as short chain fatty acid (SCFA) concentrations were determined in fecal material over three timepoints. We demonstrated that spot sampling of stool results in variable detection of some microbial members, and inconsistent levels of SCFA; therefore, sample homogenization prior to subsequent analysis or subsampling is recommended. We also identify a trend in microbial and metabolite composition that shifts over two consecutive stool collections less than 25 h apart. Lastly, we show significant differences in bacterial composition that result from collecting stool samples in OMNIgene·Gut tube (DNA Genotec) or Stool Nucleic Acid Collection and Preservation Tube (NORGEN) compared to immediate freezing. To assist with planning fecal sample collection and storage procedures for microbiome investigations with multiple analyses, we recommend participants to collect the first full bowel movement of the day and freeze the sample immediately after collection.
The association between serum microbial DNA composition and symptoms of depression and anxiety in mood disorders
Authors: Rhee Sang Jin , Kim Hyeyoung , Lee Yunna , Lee Hyun Jeong , Park C. Hyung Keun , Yang Jinho , Kim Yoon-Keun , Ahn Yong Min 
Published: July 2021

AbstractThere is increasing evidence supporting the association between gut microbiome composition and mood disorders; however, studies on the circulating microbiome are scarce. This study aimed to analyze the association of the serum microbial DNA composition with depressive and anxiety symptoms in patients with mood disorders. The sera of 69 patients with mood disorders, aged from 19 to 60, were analyzed. Bacterial DNA was isolated from extracellular membrane vesicles and, subsequently, amplified and quantified with specific primers for the V3–V4 hypervariable region of the 16S rDNA gene. Sequence reads were clustered into Operational Taxonomic Units and classified using the SILVA database. There were no significant associations between alpha diversity measures and the total Hamilton depression rating scale (HAM-D) or Beck anxiety inventory (BAI) scores. Only the weighted UniFrac distance was associated with the total HAM-D score (F = 1.57, p = 0.045). The Bacteroidaceae family and Bacteroides genus were negatively associated with the total HAM-D score (β =  − 0.016, p < 0.001, q = 0.08 and β =  − 0.016, p < 0.001, q = 0.15, respectively). The Desulfovibrionaceae family and Clostridiales Family XIII were positively associated with the total BAI score (β = 1.8 × 10−3, p < 0.001, q = 0.04 and β = 1.3 × 10−3, p < 0.001, q = 0.24, respectively). Further studies with larger sample sizes and longitudinal designs are warranted.
Developmental environment shapes honeybee worker response to virus infection
Authors: Walton Alexander , Toth Amy L. , Dolezal Adam G. 
Published: July 2021

AbstractThe consequences of early-life experiences are far reaching. In particular, the social and nutritional environments that developing animals experience can shape their adult phenotypes. In honeybees, larval nutrition determines the eventual social roles of adults as reproductive queens or sterile workers. However, little is known about the effects of developmental nutrition on important adult worker phenotypes such as disease resilience. In this study, we manipulated worker developmental nutrition in two distinct ways under semi-natural field conditions. In the first experiment, we restricted access to nutrition via social isolation by temporarily preventing alloparental care. In the second experiment, we altered the diet quality experienced by the entire colony, leading to adult bees that had developed entirely in a nutritionally restricted environment. When bees from these two experiments reached the adult stage, we challenged them with a common bee virus, Israeli acute paralysis virus (IAPV) and compared mortality, body condition, and the expression of immune genes across diet and viral inoculation treatments. Our findings show that both forms of early life nutritional stress, whether induced by lack of alloparental care or diet quality restriction, significantly reduced bees’ resilience to virus infection and affected the expression of several key genes related to immune function. These results extend our understanding of how early life nutritional environment can affect phenotypes relevant to health and highlight the importance of considering how nutritional stress can be profound even when filtered through a social group. These results also provide important insights into how nutritional stress can affect honeybee health on a longer time scale and its potential to interact with other forms of stress (i.e. disease).
Status of corneal endothelial cells in the presence of silicone oil in the anterior chamber
Authors: Shimmura-Tomita Machiko , Takano Hiroko , Tanaka Yoshiaki , Takagi Rina , Kaburaki Toshikatsu , Kakehashi Akihiro 
Published: July 2021

AbstractTo evaluate corneal endothelium damage with silicone oil (SO) presence in the anterior chamber after pars plana vitrectomy. We investigated the medical records of consecutive 54 eyes of 53 patients undergoing SO removal after pars plana vitrectomy with SO tamponade at Saitama Medical Center, Jichi Medical University, Japan. We recorded SO tamponade retention period, anterior chamber SO with gonioscope, area of SO attachment to the corneal endothelium before SO removal surgery, and the lens status. We then retrospectively investigated the correlation between SO presence in the anterior chamber and the decrease rate of corneal endothelial cell (CEC) density during SO tamponade. The average decrease rate of CEC density was 7.6 (0–38.1) %. The correlation between SO tamponade retention period and decrease rate of CEC density was high (p = 0.0001). However, there was no correlation between anterior chamber SO under gonioscope, SO attaching area, and lens status with the decrease rate of CEC density (p = 0.11, p = 0.93, p = 0.16). No correlation was observed between CEC loss and the existence of anterior chamber SO, although CEC decrease rate was relatively high after a long SO tamponade period. These findings suggest that SO presence in the anterior chamber may not directly injure CEC.