bluuebunny/crossref_metadata_2025_split huggingface dataset:
Development, validation of a GC–MS method for the simultaneous measurement of amino acids, their PTM metabolites and AGEs in human urine, and application to the bi-ethnic ASOS study with special emphasis to lysine
Authors: Baskal Svetlana , Bollenbach Alexander , Mels Catharina , Kruger Ruan , Tsikas Dimitrios 
Published: July 2021

AbstractA gas chromatography-mass spectrometry (GC–MS) method was developed and validated in relevant concentration ranges for the simultaneous measurement of l-lysine (Lys, L) and its Nε- and Nα-methylated (M), Nε- and Nα-acetylated (Ac), Nε-carboxymethylated (CM) and Nε-carboxyethylated (CE) metabolites in human urine. Analyzed Lys metabolites were the post-translational modification (PTM) products Nε-mono-, di- and trimethyllsine, Nε-MML, Nε-DML, Nε-TML, respectively, Nα-ML, Nε-AcL, Nα-AcL, and its advanced glycation end-products (AGEs) Nε-CML, Nε-CM-[2,4,4-2H3]Lys (d3-CML), Nε-CEL and furosine. AGEs of arginine (Arg) and cysteine (Cys) were also analyzed. De novo synthesized trideutero-methyl esters (R-COOCD3) from unlabelled amino acids and derivatives were used as internal standards. Native urine samples (10 µL aliquots) were evaporated to dryness under a stream of nitrogen. Analytes were esterified using 2 M HCl in methanol (60 min, 80 °C) and subsequently amidated by pentafluoropropionic anhydride in ethyl acetate (30 min, 65 °C). The generated methyl ester-pentafluoropropionyl (Me-PFP) derivatives were reconstituted in borate buffer and extracted immediately with toluene. GC–MS analyses were performed by split-less injection of 1-µL aliquots, oven-programmed separation and negative-ion chemical ionization (NICI). Mass spectra were generated in the scan mode (range, m/z 50–1000). Quantification was performed in the selected-ion monitoring (SIM) mode using a dwell time of 50 or 100 ms for each ion. The GC–MS method was suitable for the measurement of Lys and all of its metabolites, except for the quaternary ammonium cation Nε-TML. The Me-PFP derivatives of Lys, Arg and Cys and its metabolites eluted in the retention time window of 9 to 14 min. The derivatization of Nε-CML, d3-CML and Nε-CEL was accompanied by partial Nε-decarboxylation and formation of the Me-PFP Lys derivative. The lowest derivatization yield was observed for Nε-DML, indicating a major role of the Nε-DML group in Lys derivatization. The GC–MS method enables precise (relative standard deviation, RSD < 20%) and accurate (bias, < ± 20%) simultaneous measurement of 33 analytes in human urine in relevant concentration ranges. We used the method to measure the urinary excretion rates of Lys and its PTM metabolites and AGEs in healthy black (n = 39) and white (n = 41) boys of the Arterial Stiffness in Offspring Study (ASOS). No remarkable differences were found indicating no ethnic-related differences in PTM metabolites and AGEs except for Nε-monomethyllysine and S-(2-carboxymethylcysteine).
European clinical guidelines for Tourette syndrome and other tic disorders: summary statement
Authors: Müller-Vahl Kirsten R. , Szejko Natalia , Verdellen Cara , Roessner Veit , Hoekstra Pieter J. , Hartmann Andreas , Cath Danielle C. 
Published: July 2021

AbstractIn 2011 a working group of the European Society for the Study of Tourette syndrome (ESSTS) developed the first European Guidelines for Tourette syndrome (TS) published in the ECAP journal. After a decade ESSTS now presents updated guidelines, divided into four sections: Part I: assessment, Part II: psychological interventions, Part III: pharmacological treatment and Part IV: deep brain stimulation (DBS). In this paper, we summarise new developments described in the guidelines with respect to assessment and treatment of tics. Further, summary findings from a recent survey conducted amongst TS experts on these same topics are presented, as well as the first European patient representative statement on research. Finally, an updated decision tree is introduced providing a practical algorithm for the treatment of patients with TS. Interestingly, in the last decade there has been a significant shift in assessment and treatment of tics, with more emphasis on non-pharmacological treatments.
A night of sleep deprivation alters brain connectivity and affects specific executive functions
Authors: Pesoli Matteo , Rucco Rosaria , Liparoti Marianna , Lardone Anna , D’Aurizio Giulia , Minino Roberta , Troisi Lopez Emahnuel , Paccone Antonella , Granata Carmine , Curcio Giuseppe , Sorrentino Giuseppe , Mandolesi Laura , Sorrentino Pierpaolo 
Published: July 2021

AbstractSleep is a fundamental physiological process necessary for efficient cognitive functioning especially in relation to memory consolidation and executive functions, such as attentional and switching abilities. The lack of sleep strongly alters the connectivity of some resting-state networks, such as default mode network and attentional network. In this study, by means of magnetoencephalography (MEG) and specific cognitive tasks, we investigated how brain topology and cognitive functioning are affected by 24 h of sleep deprivation (SD). Thirty-two young men underwent resting-state MEG recording and evaluated in letter cancellation task (LCT) and task switching (TS) before and after SD. Results showed a worsening in the accuracy and speed of execution in the LCT and a reduction of reaction times in the TS, evidencing thus a worsening of attentional but not of switching abilities. Moreover, we observed that 24 h of SD induced large-scale rearrangements in the functional network. These findings evidence that 24 h of SD is able to alter brain connectivity and selectively affects cognitive domains which are under the control of different brain networks.
Distributed Learning via Filtered Hyperinterpolation on Manifolds
Authors: Montúfar Guido , Wang Yu Guang 
Published: July 2021

AbstractLearning mappings of data on manifolds is an important topic in contemporary machine learning, with applications in astrophysics, geophysics, statistical physics, medical diagnosis, biochemistry, and 3D object analysis. This paper studies the problem of learning real-valued functions on manifolds through filtered hyperinterpolation of input–output data pairs where the inputs may be sampled deterministically or at random and the outputs may be clean or noisy. Motivated by the problem of handling large data sets, it presents a parallel data processing approach which distributes the data-fitting task among multiple servers and synthesizes the fitted sub-models into a global estimator. We prove quantitative relations between the approximation quality of the learned function over the entire manifold, the type of target function, the number of servers, and the number and type of available samples. We obtain the approximation rates of convergence for distributed and non-distributed approaches. For the non-distributed case, the approximation order is optimal.
Twenty-three-year demographic history of the Affenberg Japanese macaques (Macaca fuscata), a translocated semi-free-ranging group in southern Austria
Authors: Pflüger Lena S. , Pink Katharina E. , Wallner Bernard , Radler Claudia , Dorner Markus , Huffman Michael A. 
Published: July 2021

AbstractDemographic studies on translocated primate groups provide a unique opportunity to study population dynamics, social strategies, and reproductive parameters of a species adapting to new environments. In 1996, 38 Japanese macaques (Macaca fuscata) of the Minoo-H group (Osaka Prefecture, Japan) were translocated to Affenberg Landskron, a four-hectare naturally forested park in southern Austria. By January 2020, the population had increased to 160 individuals, and a total of 223 births were recorded. Births peaked in late April to late May, and the timing was influenced by neither offspring sex nor parity status of the mother. Infant mortality was low (8.97%), mostly involving primiparous females, and the average interbirth intervals were shorter following the death of an infant (1.10 years) than a surviving infant (1.77 years). Females rarely had offspring with the same males repeatedly, and the reproductive success among males declined with increasing years of presence in the group. The main aspects of reproduction, mortality, and mate choice are consistent with published data on natural and provisioned populations in Japan and those translocated to other countries. The life expectancy for females, however, was relatively high (11.72% chance of reaching the age of 20), whereas birth control prevented them from using their lifetime reproductive potential. By January 2020, the number of old individuals (> 18 years; 17.5%) was close to that of juveniles (< 4 years; 22.5%). The specific group composition, along with the inability of males to emigrate out of their natal group, may affect the social dynamics of the population, which merits further attention in future studies.
In vivo assessment of endothelial permeability of coronary lesions with variable degree of stenosis using an albumin-binding MR probe
Authors: Engel Leif-Christopher , Landmesser Ulf , Abdelwahed Youssef S. , Gigengack Kevin , Wurster Thomas , Manes Costantia , Skurk Carsten , Lauten Alexander , Schuster Andreas , Noutsias Michel , Hamm Bernd , Botnar Rene M. , Bigalke Boris , Makowski Marcus R. 
Published: July 2021

AbstractMR imaging with an albumin-binding probe enables the visualization of endothelial permeability and damage in the arterial system. The goal of this study was to compare signal enhancement of lesions with different grades of stenosis segments on molecular CMR in combination with the albumin-binding probe gadofosveset. This prospective clinical study included patients with symptoms suggestive of coronary artery disease (CAD). Patients underwent gadofosveset-enhanced cardiovascular magnetic resonance (CMR) imaging and x-ray angiography (QCA) within 24 h. CMR imaging was performed prior to and 24 h following the administration of gadofosveset. Contrast-to-noise ratios (CNRs) between segments with different grades of stenosis were compared. Overall, n = 203 segments of 26 patients were included. Lesions with more than > 70% stenosis demonstrated significantly higher CNRs compared to lesions < 70% (7.6 ± 8.3 vs. 2.5 ± 4.9; p < 0.001). Post-stenotic segments of lesions > 70% stenosis showed significant higher signal enhancement compared to segments located upstream of these lesions (7.3 ± 8.8 vs. 2.8 ± 2.2; p = 0.02). No difference in signal enhancement between segments proximal and distal of lesions with stenosis greater than 50% was measured (3.3 ± 2.8 vs. 2.4 ± 2.7; p = 0.18). ROC analysis for the detection of lesions ≥ 70% revealed an area under the curve of 0.774 (95% CI 0.681–0.866). This study suggests that relevant coronary stenosis and their down-stream segments are associated with increased signal enhancement on Gadofosveset-enhanced CMR, suggesting a higher endothelial permeability in these lesions. An albumin-binding MR probe could represent a novel in vivo biomarker for the identification and characterization of these vulnerable coronary segments.
A novel and potentially scalable CVD-based route towards SnO2:Mo thin films as transparent conducting oxides
Authors: Ma Tianlei , Nikiel Marek , Thomas Andrew G. , Missous Mohamed , Lewis David J. 
Published: July 2021

AbstractIn this report, we prepared transparent and conducting undoped and molybdenum-doped tin oxide (Mo–SnO2) thin films by aerosol-assisted chemical vapour deposition (AACVD). The relationship between the precursor concentration in the feed and in the resulting films was studied by energy-dispersive X-ray spectroscopy, suggesting that the efficiency of doping is quantitative and that this method could potentially impart exquisite control over dopant levels. All SnO2 films were in tetragonal structure as confirmed by powder X-ray diffraction measurements. X-ray photoelectron spectroscopy characterisation indicated for the first time that Mo ions were in mixed valence states of Mo(VI) and Mo(V) on the surface. Incorporation of Mo6+ resulted in the lowest resistivity of $$7.3 \times 10^{{ - 3}} \Omega \,{\text{cm}}$$

7.3
×

10

-
3

Ω

cm

, compared to pure SnO2 films with resistivities of $$4.3\left( 0 \right) \times 10^{{ - 2}} \Omega \,{\text{cm}}$$

4.3

0

×

10

-
2

Ω

cm

. Meanwhile, a high transmittance of 83% in the visible light range was also acquired. This work presents a comprehensive investigation into impact of Mo doping on SnO2 films synthesised by AACVD for the first time and establishes the potential for scalable deposition of SnO2:Mo thin films in TCO manufacturing.
Graphical abstract
On testing transitivity in online preference learning
Authors: Haddenhorst Björn , Bengs Viktor , Hüllermeier Eyke 
Published: July 2021

AbstractThe efficiency of state-of-the-art algorithms for the dueling bandits problem is essentially due to a clever exploitation of (stochastic) transitivity properties of pairwise comparisons: If one arm is likely to beat a second one, which in turn is likely to beat a third one, then the first is also likely to beat the third one. By now, however, there is no way to test the validity of corresponding assumptions, although this would be a key prerequisite to guarantee the meaningfulness of the results produced by an algorithm. In this paper, we investigate the problem of testing different forms of stochastic transitivity in an online manner. We derive lower bounds on the expected sample complexity of any sequential hypothesis testing algorithm for various forms of stochastic transitivity, thereby providing additional motivation to focus on weak stochastic transitivity. To this end, we introduce an algorithmic framework for the dueling bandits problem, in which the statistical validity of weak stochastic transitivity can be tested, either actively or passively, based on a multiple binomial hypothesis test. Moreover, by exploiting a connection between weak stochastic transitivity and graph theory, we suggest an enhancement to further improve the efficiency of the testing algorithm. In the active setting, both variants achieve an expected sample complexity that is optimal up to a logarithmic factor.
Embedding of complete graphs in broken Chimera graphs
Authors: Lobe Elisabeth , Schürmann Lukas , Stollenwerk Tobias 
Published: July 2021

AbstractIn order to solve real-world combinatorial optimization problems with a D-Wave quantum annealer, it is necessary to embed the problem at hand into the D-Wave hardware graph, namely Chimera or Pegasus. Most hard real-world problems exhibit a strong connectivity. For the worst-case scenario of a complete graph, there exists an efficient solution for the embedding into the ideal Chimera graph. However, since real machines almost always have broken qubits, it is necessary to find an embedding into the broken hardware graph. We present a new approach to the problem of embedding complete graphs into broken Chimera graphs. This problem can be formulated as an optimization problem, more precisely as a matching problem with additional linear constraints. Although being NP-hard in general, it is fixed-parameter tractable in the number of inaccessible vertices in the Chimera graph. We tested our exact approach on various instances of broken hardware graphs, both related to real hardware and randomly generated. For fixed runtime, we were able to embed larger complete graphs compared to previous, heuristic approaches. As an extension, we developed a fast heuristic algorithm which enables us to solve even larger instances. We compared the performance of our heuristic and exact approaches.
Dairy farm-workers’ knowledge of factors responsible for culling and mortality in the Eastern Cape Province, South Africa
Authors: Diniso Yanga Simamkele , Jaja Ishmael Festus 
Published: July 2021

AbstractMilk serves as a significant source of protein for many families and aids in combating food insecurity. However, the demand for milk and milk-related products far exceeds the supply. The objective of the study was to evaluate dairy farm-workers’ knowledge of factors responsible for culling and mortality of dairy cows in the Eastern Cape Province. Data was collected from 106 dairy farm-workers using a questionnaire. Any correctly answered question by the majority amounted to a point and a zero for incorrectly answered questions. Correct answering by the majority to more than half the questions of a subsection amounted to a pass. A less than 50% pass rate was considered a poor level of knowledge, 51–69% pass rate was considered an average level of knowledge, and anything higher than that was considered a good level of knowledge. Most farm-workers (66.0%) relied on their colleagues for dairy health information. Most dairy farm-workers (49.1%) indicated that lameness, milk fever (56.6%), and mastitis (47.2%) do not lead to culling and mortality of dairy cows. A majority (83%) of farm-workers agreed that reproduction problems, poor milk yield (77.3%), and age (81.1%) are the main reasons for culling dairy cows. The participants had varying perceptions and limited knowledge (28.3%) about the major contributing factors of culling and mortality. The lack of training courses and minimal use of other sources of information such as the internet might contribute to this poor knowledge and perceptions.
Reduce delay of multipath TCP in IoT networks
Authors: Aljubayri Mohammed , Peng Tong , Shikh-Bahaei Mohammad 
Published: July 2021

AbstractMulti-homed devices such as smartphones, tablets and laptops are enabled with multiple heterogeneous interfaces available for transmission. Those interfaces can be utilized for simultaneous transmission of a single TCP flow using Multipath TCP (MPTCP). MPTCP is a protocol that is designed to increase end-to-end throughput and reliability of communications by splitting data through multiple parallel paths. Although delay in MPTCP enhanced significantly in the recent years, high number of data transmissions remains an issue. In this paper, we reduce MPTCP delay by reducing the number of transmissions using Opportunistic Routing (OR) technique. OR is a routing model used to increase the delivery rate and reliability of data transmission in wireless networks by using the broadcasting method. This enables each subflow data to be delivered by multiple relays. We adapted OR on a number of MPTCP protocols namely, traditional MPTCP, Multipath TCP Traffic Splitting Control (MPTCP-TSC) and Redundant MPTCP (ReMP TCP) in an Internet of Things (IoT) environment. The results show that OR-based MPTCP schemes outperform existing schemes. We further compared the OR-based MPTCP protocols in terms of startup delay and energy efficiency. We found that ReMP TCP is better than other schemes in all scenarios.
Extracellular vesicles derived from lung cancer cells exposed to intermittent hypoxia upregulate programmed death ligand 1 expression in macrophages
Authors: Liu Yuanling , Lu Minzhen , Chen Jianan , Li Siqi , Deng Yiyu , Yang Shifang , Ou Qiong , Li Jing , Gao Ping , Luo Zeru , Yuan Ping , Tan Jianlong , Gao Xinglin 
Published: July 2021

Abstract
Purpose
Intermittent hypoxia (IH), a hallmark of obstructive sleep apnea (OSA), compromises immune surveillance through the upregulation of programmed cell death-1 ligand (PD-L1). Tumor-released extracellular vesicles (EVs) have been reported to modulate immunosuppressive activities. We investigated whether or not EVs derived from intermittent hypoxic lung cancer cells can alter the expression of PD-L1 in macrophages.

Methods
The expression of PD-L1+monocytes from 40 patients with newly diagnosed non-small-cell lung cancer (NSCLC) and with (n=21) or without (n=19) OSA were detected. Plasma EVs isolated from NSCLC patients with moderate–severe OSA (n=4) and without OSA (n=4) were co-cultured with macrophages. A549 cells were exposed to normoxia or IH (48 cycles of 5 min of 1% O2 hypoxia, followed by 5 min of normoxia). EVs were isolated from cell supernatant and were co-cultured with macrophages differentiated from THP-1. PD-L1 and hypoxia-inducible factor-1 α (HIF-1α) expressions were measured by flow cytometry, immunofluorescence, and Western blot analysis.

Results
PD-L1+monocytes were elevated in NSCLC patients with OSA and increased with the severity of OSA and nocturnal desaturation. PD-L1+ macrophages were induced by EVs from NSCLC patients with OSA and positively correlated with HIF-1α expressions. EVs from IH-treated A549 can promote PD-L1 and HIF-1α expression in macrophages and the upregulation of PD-L1 expression was reversed by specific HIF-1α inhibitor.

Conclusion
IH can enhance the function of EVs derived from lung cancer cells to aggravate immunosuppressive status in macrophages. HIF-1α may play an important role in this process.
Cerebrovascular events in patients with isolated anti-phosphatidyl-serine/prothrombin antibodies
Authors: Radin Massimo , Barinotti Alice , Foddai Silvia Grazietta , Cecchi Irene , Rubini Elena , Roccatello Dario , Menegatti Elisa , Sciascia Savino 
Published: July 2021

AbstractThe interest of extra-criteria antiphospholipid antibodies is growing, especially in patients negative for conventional antibodies. In this study we aimed to assess the clinical utility of anti-phosphatidyl-serine/prothrombin antibodies (aPS/PT) testing in patients negative for Beta2-Glycoprotein 1(β2GPI)-dependent tests, for identifying antiphospholipid syndrome (APS) patients that developed cerebrovascular events (CVE). When screening APS patients attending our center, out of 119 aPS/PT IgG/IgM-positive patients, thus patients negative for aβ2GPI and aCL, 42 patients (35%) tested negative for β2GPI-dependent tests and were tested with thrombin generation assay (TGA). Ten patients (24%), with isolated aPS/PT IgG/IgM, had a history of CVE. Lupus anticoagulant (LA)-positive test was more frequently observed in patients with CVE (8/22 vs. 2/20; p = 0.045). Out of the 10 patients who experienced CVE, 3 patients were aPS/PT IgG positive (all LA positive), and 8 patients were aPS/PT IgM positive (6/8 LA positive). One patient was positive for both aPS/PT IgG and IgM. LA-positive patients had only high titers of aPS/PT IgG/IgM, all of them being ≥ 80 U/ml, while the 2 LA-negative patients were aPS/PT IgM positive with medium titers [40–60 U/ml]. LA-positive patients had significantly altered TGA profile when compared to those who were LA negative, considering all TGA parameters. LA-positive patients had significantly higher tLag (8.4 ± 3.3 min vs. 6.6 ± 1.8 min; p = 0.046), higher tPeak (14 ± 4.3 min vs. 11 ± 2.7 min; p = 0.015) and lower Peak (207 ± 152 nM vs. 356.3 ± 104.7 nM; p < 0.001) and lower AUC (2109.7 ± 1006.9 nM vs. 2772.5 ± 776.8 nM; p = 0.033). The use of aPS/PT might be of help in identifying patients with CVE and APS, as also confirmed by TGA testing.