bluuebunny/crossref_metadata_2025_split huggingface dataset:
Survey of low pathogenic avian influenza viruses in live poultry markets in Guangxi Province, Southern China, 2016–2019
Authors: Luo Sisi , Xie Zhixun , Li Meng , Li Dan , Xie Liji , Huang Jiaoling , Zhang Minxiu , Zeng Tingting , Wang Sheng , Fan Qing , Zhang Yanfang , Xie Zhiqin , Deng Xianwen , Liu Jiabo 
Published: December 2021

AbstractLow pathogenic avian influenza viruses (LPAIVs) have been widespread in poultry and wild birds throughout the world for many decades. LPAIV infections are usually asymptomatic or cause subclinical symptoms. However, the genetic reassortment of LPAIVs may generate novel viruses with increased virulence and cross-species transmission, posing potential risks to public health. To evaluate the epidemic potential and infection landscape of LPAIVs in Guangxi Province, China, we collected and analyzed throat and cloacal swab samples from chickens, ducks and geese from the live poultry markets on a regular basis from 2016 to 2019. Among the 7,567 samples, 974 (12.87%) were LPAIVs-positive, with 890 single and 84 mixed infections. Higher yearly isolation rates were observed in 2017 and 2018. Additionally, geese had the highest isolation rate, followed by ducks and chickens. Seasonally, spring had the highest isolation rate. Subtype H3, H4, H6 and H9 viruses were detected over prolonged periods, while H1 and H11 viruses were detected transiently. The predominant subtypes in chickens, ducks and geese were H9, H3, and H6, respectively. The 84 mixed infection samples contained 22 combinations. Most mixed infections involved two subtypes, with H3 + H4 as the most common combination. Our study provides important epidemiological data regarding the isolation rates, distributions of prevalent subtypes and mixed infections of LPAIVs. These results will improve our knowledge and ability to control epidemics, guide disease management strategies and provide early awareness of newly emerged AIV reassortants with pandemic potential.
Optimisation of enzymatic saccharification of wheat straw pre-treated with sodium hydroxide
Authors: Wang Zhiquan , Wu Suqing , Fan Chunzhen , Zheng Xiangyong , Zhang Wei , Wu Deyi , Wang Xinze , Kong Hainan 
Published: December 2021

AbstractTo enhance the reducing sugar yield in enzymatic hydrolysis, various factors (NaOH concentration, solid content and pre-treatment time) that affect the pre-treatment process were investigated and evaluated based on the reducing sugar yield of the subsequent enzymatic hydrolysis. The enzymatic hydrolysis was based on the cellulase from Trichoderma reesi ATCC 26921, the optimum NaOH pre-treatment conditions were an NaOH concentration of 1.0% (w/w), a solid content of 5.0% (w/v) and a pre-treatment time of 60 min. Various parameters that affect the enzymatic hydrolysis of wheat straw, including the solid content, enzyme loading, pH and hydrolysis time, were investigated and optimized through a Box–Behnken design and response surface methodology. The predicted optimum conditions for enzymatic hydrolysis were a solid content of 8.0% (w/v), an enzyme loading of 35 FPU/g substrate, a temperature of 50 °C, a pH of 5.3 and a hydrolysis time of 96 h. The experimental result showed that the maximum reducing sugar yield was 60.73% (53.35% higher than the wheat straw without NaOH pre-treatment), which is in accordance with the predicted conditions.
Phytosulfokine α (PSKα) delays senescence and reinforces SUMO1/SUMO E3 ligase SIZ1 signaling pathway in cut rose flowers (Rosa hybrida cv. Angelina)
Authors: Aghdam Morteza Soleimani , Ebrahimi Amin , Sheikh-Assadi Morteza 
Published: December 2021

AbstractRoses are widely used as cut flowers worldwide. Petal senescence confines the decorative quality of cut rose flowers, an impressively considerable economic loss. Herein, we investigated the SUMO1/SUMO E3 ligase SIZ1 signaling pathway during bud opening, and petal senescence of cut rose flowers. Our results exhibited that the higher expression of SUMO1 and SUMO E3 ligase SIZ1 during bud opening was accompanied by lower endogenous H2O2 accumulation arising from higher expression and activities of SOD, CAT, APX, and GR, promoting proline accumulation by increasing P5CS expression and activity and enhancing GABA accumulation by increasing GAD expression and activity. In harvested flowers, lower expressions of SUMO1 and SUMO E3 ligase SIZ1 during petal senescence were associated with higher endogenous H2O2 accumulation due to lower expression and activities of SOD, CAT, APX, and GR. Therefore, promoting the activity of the GABA shunt pathway as realized by higher expression and activities of GABA-T and SSADH accompanied by increasing OAT expression and activity for sufficiently supply proline in rose flowers during petal senescence might serve as an endogenous antisenescence mechanism for slowing down petals senescence by avoiding endogenous H2O2 accumulation. Following phytosulfokine α (PSKα) application, postponing petal senescence in cut rose flowers could be ascribed to higher expression of SUMO1 and SUMO E3 ligase SIZ1 accompanied by higher expression and activities of SOD, CAT, APX, and GR, higher activity of GABA shunt pathway as realized by higher expression and activities of GAD, GABA-T, and SSADH, higher expression and activities of P5CS and OAT for supplying proline and higher expression of HSP70 and HSP90. Therefore, our results highlight the potential of the PSKα as a promising antisenescence signaling peptide in the floriculture industry for postponing senescence and extending the vase life of cut rose flowers.
DNA repair inhibitors sensitize cells differently to high and low LET radiation
Authors: Bannik Kristina , Madas Balázs , Jarke Sabrina , Sutter Andreas , Siemeister Gerhard , Schatz Christoph , Mumberg Dominik , Zitzmann-Kolbe Sabine 
Published: December 2021

AbstractThe aim of this study was to investigate effects of high LET α-radiation in combination with inhibitors of DDR (DNA-PK and ATM) and to compare the effect with the radiosensitizing effect of low LET X-ray radiation. The various cell lines were irradiated with α-radiation and with X-ray. Clonogenic survival, the formation of micronuclei and cell cycle distribution were studied after combining of radiation with DDR inhibitors. The inhibitors sensitized different cancer cell lines to radiation. DNA-PKi affected survival rates in combination with α-radiation in selected cell lines. The sensitization enhancement ratios were in the range of 1.6–1.85 in cancer cells. ATMi sensitized H460 cells and significantly increased the micronucleus frequency for both radiation qualities. ATMi in combination with α-radiation reduced survival of HEK293. A significantly elicited cell cycle arrest in G2/M phase after co-treatment of ATMi with α-radiation and X-ray. The most prominent treatment effect was observed in the HEK293 by combining α-radiation and inhibitions. ATMi preferentially sensitized cancer cells and normal HEK293 cells to α-radiation. DNA-PKi and ATMi can sensitize cancer cells to X-ray, but the effectiveness was dependent on cancer cells itself. α-radiation reduced proliferation in primary fibroblast without G2/M arrest.
Prognostic value of baseline metabolic tumour volume in advanced-stage Hodgkin’s lymphoma
Authors: Pinochet Pierre , Texte Edgar , Stamatoullas-Bastard Aspasia , Vera Pierre , Mihailescu Sorina-Dana , Becker Stéphanie 
Published: December 2021

AbstractOur aim was to evaluate the prognostic value of initial total metabolic tumour volume (TMTV) in a population of patients with advanced-stage Hodgkin’s lymphoma (HL). We retrospectively included 179 patients with stage IIb-III-IV Hodgkin’s disease who received BEACOPP or ABVD as the first-line treatment. The initial TMTV was determined using a semi-automatic method for each patient. We analysed its prognostic value in terms of 5-year progression-free survival (PFS), overall survival, and positron emission tomography (PET) response after two courses of chemotherapy. Considering all the treatments and using a threshold of 217 cm3, TMTV was predictive of 5-year PFS and PET response after two courses of chemotherapy. In multivariable analysis involving TMTV, IPI score, and the first treatment received, TMTV remained a baseline prognostic factor for 5-year PFS. In the subgroup of patients treated with BEACOPP with a threshold of 331 cm3, TMTV was predictive of PET response, but not 5-year PFS (p = 0.087). The combined analysis of TMTV and PET response enabled the individualisation of a subgroup of patients (low TMTV and complete response on PET) with a very low risk of recurrence. Baseline TMTV appears to be a useful independent prognostic factor for predicting relapse in advanced-stage HL in ABVD subgroup, with a tendency of survival curves separation in BEACOPP subgroup.
New novel thermal insulation and sound-absorbing materials from discarded facemasks of COVID-19 pandemic
Authors: Ali M. , Almuzaiqer R. , Al-Salem K. , Alabdulkarem A. , Nuhait A. 
Published: December 2021

AbstractDue to the COVID-19 pandemic, people were encouraged and sometimes required to wear disposable facemasks, which then are discarded creating an environmental problem. In this study, we aim at investigating novel ideas to recycle wasted facemasks in order to lower the environmental impact. An experimental study has been carried out to investigate the possibility of using discarded masks for thermal insulation and sound absorption. The wasted masks are simulated by new masks, which stripped off the nose clips, elastic ear loops and are heated to 120 °C for one hour to kill any biological contaminants. The masks are also melted to investigate their thermal insulation and sound absorption properties. Results show that the thermal conductivity coefficients of the loose and melted masks are 0.03555 and 0.08683 W/m K, respectively, at room temperature of about 25 °C. Results show also that the sound absorption coefficient for loose masks is above 0.6 for the frequency range 600–5000 Hz. The loose facemasks are found to be thermally stable up to 295 °C, elastic ear loops at 304.7 °C, and the composite (melted) facemasks at 330.0 °C using the thermo-gravimetric analysis. Characterization of the facemask’s three-layer fibers and the composite (melted) samples is obtained using scanning electron microscopy (SEM). The three-point bending test is obtained for the composite specimens showing good values of flexural stress, flexural strain, and flexural elastic modulus. These results are promising about using such discarded masks as new thermal insulation and sound-absorbing materials for buildings replacing the synthetic or petrochemical insulation materials.
Pan-cancer analysis of non-oncogene addiction to DNA repair
Authors: Bermúdez-Guzmán Luis 
Published: December 2021

AbstractCancer cells usually depend on the aberrant function of one or few driver genes to initiate and promote their malignancy, an attribute known as oncogene addiction. However, cancer cells might become dependent on the normal cellular functions of certain genes that are not oncogenes but ensure cell survival (non-oncogene addiction). The downregulation or silencing of DNA repair genes and the consequent genetic and epigenetic instability is key to promote malignancy, but the activation of the DNA-damage response (DDR) has been shown to become a type of non-oncogene addiction that critically supports tumour survival. In the present study, a systematic evaluation of DNA repair addiction at the pan-cancer level was performed using data derived from The Cancer Dependency Map and The Cancer Genome Atlas (TCGA). From 241 DDR genes, 59 were identified as commonly essential in cancer cell lines. However, large differences were observed in terms of dependency scores in 423 cell lines and transcriptomic alterations across 18 cancer types. Among these 59 commonly essential genes, 14 genes were exclusively associated with better overall patient survival and 19 with worse overall survival. Notably, a specific molecular signature among the latter, characterized by DDR genes like UBE2T, RFC4, POLQ, BRIP1, and H2AFX showing the weakest dependency scores, but significant upregulation was strongly associated with worse survival. The present study supports the existence and importance of non-oncogenic addiction to DNA repair in cancer and may facilitate the identification of prognostic biomarkers and therapeutic opportunities.
In-plane magnetic field-driven symmetry breaking in topological insulator-based three-terminal junctions
Authors: Kölzer Jonas , Moors Kristof , Jalil Abdur Rehman , Zimmermann Erik , Rosenbach Daniel , Kibkalo Lidia , Schüffelgen Peter , Mussler Gregor , Grützmacher Detlev , Schmidt Thomas L. , Lüth Hans , Schäpers Thomas 
Published: December 2021

AbstractTopological surface states of three-dimensional topological insulator nanoribbons and their distinct magnetoconductance properties are promising for topoelectronic applications and topological quantum computation. A crucial building block for nanoribbon-based circuits are three-terminal junctions. While the transport of topological surface states on a planar boundary is not directly affected by an in-plane magnetic field, the orbital effect cannot be neglected when the surface states are confined to the boundary of a nanoribbon geometry. Here, we report on the magnetotransport properties of such three-terminal junctions. We observe a dependence of the current on the in-plane magnetic field, with a distinct steering pattern of the surface state current towards a preferred output terminal for different magnetic field orientations. We demonstrate that this steering effect originates from the orbital effect, trapping the phase-coherent surface states in the different legs of the junction on opposite sides of the nanoribbon and breaking the left-right symmetry of the transmission across the junction. The reported magnetotransport properties demonstrate that an in-plane magnetic field is not only relevant but also very useful for the characterization and manipulation of transport in three-dimensional topological insulator nanoribbon-based junctions and circuits, acting as a topoelectric current switch.
Progression of Self-Perceived Speech and Swallowing Impairment in Early Stage Parkinson's Disease: Longitudinal Analysis of the Unified Parkinson's Disease Rating Scale
Authors: Watts Christopher R. , Zhang Yan 
Published: December 2021

Purpose:
The purpose of this study was to investigate the presence and progression of self-perceived speech and swallowing impairments in newly diagnosed people with Parkinson's disease (PD) longitudinally across 6 years.

Method:

Longitudinal data from the Parkinson's Progression Markers Initiative were analyzed across six consecutive years in a cohort of 269 newly diagnosed people with PD, and a subset of those (
n
= 211) who were assessed at every time point across the 6 years. Dependent variables included self-perceived ratings of speech and swallowing impairment severity from the Unified Parkinson's Disease Rating Scale. Patient-centered factors of age at diagnosis and motor phenotype were also assessed to determine if they were related to the change in self-perceived speech and swallowing impairments.

Results:

Overall, self-perceived speech and swallowing impairments were present in newly diagnosed people with PD, although over time, the degree of severity for both remained in the mild range. However, the rate of change over time was significant for perceived speech impairment,
F
(5.5, 1158.8) = 21.1,
p
< .001), and perceived swallowing impairment,
F
(5.2, 1082.6) = 8.6,
p
< .001. Changes for speech and swallowing impairment were both in the direction of progressive severity. There were no effects of age at diagnosis or motor phenotype on the degree of change for either speech or swallowing.

Conclusions:
Self-perceptions of speech and swallowing impairment changed significantly over time in newly diagnosed people with PD (PWPD). Consistent with existing literature, self-perceptions of speech impairment were rated as more severe than those of swallowing impairment. These findings reveal that even in the early years postdiagnoses, PWPD are experiencing changes to speech and swallowing function, albeit within the mildly severe range. The presence of self-perceived mild speech and swallowing impairments in the initial years postdiagnosis may support the need for intervention to improve and or sustain function over time.
Catalogue of stars measured in the Geneva seven-colour photometric system
Authors: Paunzen E. 
Published: December 2021

Context. The Geneva seven-colour photometric system is successfully applied to the study of various astrophysical objects. It measures the slope of the Paschen continuum, the Balmer discontinuity, and blocking absorption due to hydrogen or metallic lines. One of its greatest strengths is its intrinsic homogeneity.
Aims. A new catalogue of the available measurements was generated, 30 years after the last publication.
Methods. The identifications for the individual stars were cross-checked on the basis of the Gaia and 2MASS catalogues. The high precision coordinates together with proper motions (if available) are included, for the first time, in the catalogue. Special caution was exercised with binaries and high-proper-motion stars.
Results. The catalogue includes 42 911 entries of highly accurate photometry.
Conclusions. The data of this catalogue can be used for various applications, such as new calibrations of astrophysical parameters, the standardisation of new observations, and as additional information for ongoing and forthcoming all-sky surveys, such as the Transiting Exoplanet Survey Satellite.
“Debaryomyces subglobosus” – Management of a rare case of fungal septic arthritis post arthroscopic rotator cuff repair – a case report
Authors: Palasseril Aizel Sherief , Gopinath Sathya Vignes , Thanikachalam Ramakrishnan , Prabhu Sanjoo Anto , Rajamanoharan Vivek , Shahul Mymoonah Risha 
Published: December 2021

Fungal septic arthritis of the shoulder is extremely rare in post arthroscopic rotator cuff repair patients. We report our experience in successfully identifying and managing a rare case of fungal septic arthritis with Debaryomyces subglobosus in an uncontrolled diabetic patient who underwent arthroscopic rotator cuff repair in 2019. Our patient had complete resolution of symptoms and a reasonable functional recovery within 2 months of debridement and initiation of the specific anti-fungal. This case highlights the importance of high clinical suspicion for atypical fungal infections, and the use of culture-independent modern diagnostic tools like DNA-PCR as adjuncts to successfully identify rare pathogens in immunodeficient patients presenting with vague, nonspecific symptoms of infection.
Clinical and Genetic Aspects of Juvenile Onset Pompe Disease
Authors: Holzwarth Johanna , Minopoli Nadja , Pfrimmer Charlotte , Smitka Martin , Borrel Sabine , Kirschner Janbernd , Muschol Nicole , Hartmann Hans , Hennermann Julia B. , Neubauer Bernd A. , Hobbiebrunken Elke , Husain Ralf A. , Hahn Andreas 
Published: December 2021

AbstractLittle is known about clinical symptomatology and genetics of juvenile onset Pompe disease (JOPD). The aims of this study were to analyze how these children are diagnosed, what clinical problems they have, and how phenotype is related to genotype. To accomplish this, we analyzed retrospectively data of 34 patients diagnosed after their first and before completion of their 18th birthday. Median age at diagnosis was 3.9 (range 1.1–17) years. Eight patients (23.5%) developed initial symptoms in the first year, 12 (35%) between 1 and 7 years, and 6 (18%) thereafter. Eight (23.5%) had no clinical symptoms at the time of diagnosis. Indications for diagnostics were a positive family history in three (9%), hyperCKemia in eight (23.5%), motor developmental delay in three (9%), and muscle weakness and/or pain in 17 (50%). Rare clinical signs were failure to thrive, recurrent diarrhea, and suspected hepatopathy with glycogen storage. Thirty-two different mutations were identified. Twenty-seven patients (79.5%) carried the milder c.32–13T > G mutation, known to be associated with a broad range of phenotypes. Three out of eight patients manifesting within the first year of life showed generalized muscle weakness, hypertrophic cardiomyopathy, and had to be ventilated during the course of disease, thereby demonstrating clinical overlap with infantile onset Pompe disease.These findings demonstrate that the phenotype of JOPD is broad and that the differential is not only restricted to neuromuscular disorders. Genotypic analysis was useful to delineate subjects with early onset JOPD from those with IOPD, but overall genotype–phenotype correlation was poor.
Characterization of an under-development capacitor dosimeter equipped with a silicon x-ray diode
Authors: Yamaguchi Satoshi , Ieko Yoshiro , Ariga Hisanori , Yoshioka Kunihiro 
Published: December 2021

Herein, we evaluated a capacitor dosimeter under development by a manufacturer, which is designed to monitor the entrance dose in x-ray diagnosis and comprises a silicon x-ray diode (Si-XD), a 0.1 µF capacitor, and a dosimeter dock. The Si-XD is a high-sensitivity photodiode optimized for x-ray detection. The dosimeter was charged to 3.30 V using the dock before x-ray irradiation. The charging voltage was reduced by photocurrents flowing through the Si-XD during irradiation, and the discharging voltage was measured. For the fundamental characterization of this capacitor dosimeter, we investigated the x-ray tube-current and tube-voltage dependences of the measured dose using an industrial x-ray tube; the angular dependence was also investigated. A commercially available semiconductor dosimeter (RaySafe ThinX) was used for dose calibration. The doses were proportional to the tube current at a constant tube voltage of 100 kV and increased with increasing tube voltage at a constant tube current of 1.0 mA. The dose difference with respect to the commercially available semiconductor dosimeter was within 1.0% when the tube current was varied and it was within 3.0% when the tube voltage was varied. In the angular dependence measurement, a difference of up to 6.0% was observed as the angle varied from 0° to 355° in steps of 5°. The dose-calibration results indicated that the determination of the initial charging voltage was important for dose conversion using the capacitor dosimeter.
A stop-flow sample delivery system for transient spectroscopy
Authors: Buhrke David , Ruf Jeannette , Heckmeier Philipp , Hamm Peter 
Published: December 2021

A stop-flow sample delivery system for transient spectroscopy is presented, which is, in particular, suited for laser-based instruments (quantum-cascade lasers or amplified femtosecond lasers) with excitation pulse repetition rates in the range 10–100 Hz. Two pulsing micro-valves are mounted onto a flow cuvette designed for transient IR spectroscopy, which is integrated into a flow cycle driven by a peristaltic pump. The performance of the system is demonstrated with transient IR experiments of the trans-to-cis photoisomerization of a water-soluble azobenzene derivative. The sample stands still when the micro-valves are closed and is pushed out from the probe beam focus on a 1 ms timescale when opening the micro-valves. The setup is extremely sample efficient. It needs only small sample volumes, and at the same time, it enables excitation of a large fraction of molecules in solution.