bluuebunny/crossref_metadata_2025_split huggingface dataset:
Peripheral leucocyte molecular indicators of inflammation and oxidative stress are altered in dairy cows with embryonic loss
Authors: Dirandeh Essa , Sayyar M. A. , Ansari-Pirsaraei Z. , Deldar H. , Thatcher W. W. 
Published: June 2021

AbstractObjective of experiment was to determine whether oxidative stress (OS) and inflammation altered embryonic loss in dairy cows. Blood samples were collected at days 0, 16, 32 and 60 after timed (AI) from 200 Holstein cows to determine embryonic loss based on interferon-stimulated gene-15 (ISG15) mRNA expression (day 16) and ultrasound at day 32 and day 60. Leucocyte expressions of mRNA TLR2, TLR4, TNF-α, IL1B, IL10, STAT3 (inflammation), PTGS2, PTGES (prostaglandin synthesis), and PLA2G4A and ALOX5AP (eicosanoid metabolism) at days 0 and 16 were determined. Plasma redox status for antioxidant enzymatic activities of glutathione peroxidase (GPX), superoxide dismutase (SOD), total antioxidant capacity (TAC), and concentrations of malondialdehyde (MDA) were determined at days 0, 16, 32 and 60. All antioxidant-redox responses were beneficially significant in pregnant cows diagnosed pregnant at day16 and sustained pregnancy to day 60 compared to non-pregnant cows at day16 or pregnant at day16 and lost embryos by days 32 or 60. The leucocyte mRNA expressions of TLR2, TLR4, STAT 3, IL1B, PTGS2, PLA2G4A and ALOX5AP were greater and PTGES was lower at day16 in pregnant cows that lost embryos early (P < 0.05). In conclusion peripheral leucocyte molecular indicators of inflammation and plasma indicators of OS were altered in pregnant cows undergoing embryonic losses compared to cows with a sustained pregnancy.
Uridine and pyruvate protect T cells’ proliferative capacity from mitochondrial toxic antibiotics: a clinical pilot study
Authors: Battaglia Stefano , De Santis Stefania , Rutigliano Monica , Sallustio Fabio , Picerno Angela , Frassanito Maria Antonia , Schaefer Ingo , Vacca Angelo , Moschetta Antonio , Seibel Peter , Battaglia Michele , Villani Gaetano 
Published: June 2021

AbstractAntibiotics that inhibit bacterial protein or nucleic acid synthesis and function can exert an off-target action on mitochondria (mitotoxic antibiotics), making actively dividing mammalian cells dependent on uridine and pyruvate supplementation. Based on this rationale, we carried out, for the first time, a randomized pilot study in 55 patients with asymptomatic bacteriuria or positive sperm culture, each treated with a single mitotoxic antibiotic with or without oral supplementation of uridine + pyruvate (Uripyr, Mitobiotix, Italy). The in vivo and ex vivo data show a a 3.4-fold higher value in the differential (before and after the antibiotic treatment) lymphocytes count and a 3.7-fold increase in the percentage of dividing T cells, respectively, in the Uripyr vs the control group. Our findings lay the groundwork to enhance the synergy between antibiotics and the immune system in order to optimize the administration protocols and widen the application potentials of antibiotic therapies as well as to re-evaluate old “forgotten” molecules to fight bacterial infections in the antibiotics resistance era.
Event-based backpropagation can compute exact gradients for spiking neural networks
Authors: Wunderlich Timo C. , Pehle Christian 
Published: June 2021

AbstractSpiking neural networks combine analog computation with event-based communication using discrete spikes. While the impressive advances of deep learning are enabled by training non-spiking artificial neural networks using the backpropagation algorithm, applying this algorithm to spiking networks was previously hindered by the existence of discrete spike events and discontinuities. For the first time, this work derives the backpropagation algorithm for a continuous-time spiking neural network and a general loss function by applying the adjoint method together with the proper partial derivative jumps, allowing for backpropagation through discrete spike events without approximations. This algorithm, EventProp, backpropagates errors at spike times in order to compute the exact gradient in an event-based, temporally and spatially sparse fashion. We use gradients computed via EventProp to train networks on the Yin-Yang and MNIST datasets using either a spike time or voltage based loss function and report competitive performance. Our work supports the rigorous study of gradient-based learning algorithms in spiking neural networks and provides insights toward their implementation in novel brain-inspired hardware.
Yearly changes in the composition of gut microbiota in the elderly, and the effect of lactobacilli intake on these changes
Authors: Amamoto Ryuta , Shimamoto Kazuhito , Park Sungjin , Matsumoto Hoshitaka , Shimizu Kensuke , Katto Miyuki , Tsuji Hirokazu , Matsubara Satoshi , Shephard Roy J. , Aoyagi Yukitoshi 
Published: June 2021

AbstractThe onset and worsening of some diseases are related to the variation and instability of gut microbiota. However, studies examining the personal variation of gut microbiota in detail are limited. Here, we evaluated the yearly variation of individual gut microbiota in 218 Japanese subjects aged 66–91 years, using Jensen-Shannon distance (JSD) metrics. Approximately 9% of the subjects showed a substantial change, as their formerly predominant bacterial families were replaced over the year. These subjects consumed fermented milk products less frequently than their peers. The relationship between the intake frequencies of fermented milk products containingLacticaseibacillus paracaseistrain Shirota (LcS) and JSD values was also investigated. The intra-individual JSD of subjects ingesting LcS products ≥ 3 days/week over the past 10 years was statistically lower than the < 3 days/week group (P = 0.045). Focusing on subjects with substantial gut microbiota changes, only 1.7% of the subjects were included in the LcS intake ≥ 3 days/week group whereas 11.3% were found in the < 3 days/week group (P = 0.029). These results suggest that about one-tenth of the elderly Japanese could experience a substantial change in their gut microbiota during a 1-year period, and that the habitual intake of probiotics may stabilize their gut microbiota.
Smell of green leaf volatiles attracts white storks to freshly cut meadows
Authors: Wikelski Martin , Quetting Michael , Cheng Yachang , Fiedler Wolfgang , Flack Andrea , Gagliardo Anna , Salas Reyes , Zannoni Nora , Williams Jonathan 
Published: June 2021

AbstractFinding food is perhaps the most important task for all animals. Birds often show up unexpectedly at novel food sources such as freshly tilled fields or mown meadows. Here we test whether wild European white storks primarily use visual, social, auditory or olfactory information to find freshly cut farm pastures where insects and rodents abound. Aerial observations of an entire local stork population documented that birds could not have become aware of a mown field through auditory, visual or social information. Only birds within a 75° downwind cone over 0.4–16.6 km approached any mown field. Placing freshly cut grass from elsewhere on selected unmown fields elicited similarly immediate stork approaches. Furthermore, uncut fields that were sprayed with a green leaf volatile organic compound mix ((Z)-3-hexenal, (Z)-3-hexenol, hexenyl acetate), the smell of freshly cut grass, immediately attracted storks. The use of long-distance olfactory information for finding food may be common in birds, contrary to current perception.
Unfolded protein response triggers differential apoptotic mechanisms in ovaries and early embryos exposed to maternal type 1 diabetes
Authors: Okan Aslı , Demir Necdet , Sozen Berna 
Published: June 2021

AbstractDiabetes mellitus (DM) has profound effects on the female mammalian reproductive system, and early embryonic development, reducing female reproductive outcomes and inducing developmental programming in utero. However, the underlying cellular and molecular mechanisms remain poorly defined. Accumulating evidence implicates endoplasmic reticulum (ER)-stress with maternal DM associated pathophysiology. Yet the direct pathologies and causal events leading to ovarian dysfunction and altered early embryonic development have not been determined. Here, using an in vivo mouse model of Type 1 DM and in vitro hyperglycaemia-exposure, we demonstrate the activation of ER-stress within adult ovarian tissue and pre-implantation embryos. In diabetic ovaries, we show that the unfolded protein response (UPR) triggers an apoptotic cascade by the co-activation of Caspase 12 and Cleaved Caspase 3 transducers. Whereas DM-exposed early embryos display differential ER-associated responses; by activating Chop in within embryonic precursors and Caspase 12 within placental precursors. Our results offer new insights for understanding the pathological effects of DM on mammalian ovarian function and early embryo development, providing new evidence of its mechanistic link with ER-stress in mice.
Bird-feeder cleaning lowers disease severity in rural but not urban birds
Authors: Schaper Laren , Hutton Pierce , McGraw Kevin J. 
Published: June 2021

AbstractAnimals inhabiting urban areas often experience elevated disease threats, putatively due to factors such as increased population density and horizontal transmission or decreased immunity (e.g. due to nutrition, pollution, stress). However, for animals that take advantage of human food subsidies, like feeder-visiting birds, an additional mechanism may include exposure to contaminated feeders as fomites. There are some published associations between bird feeder presence/density and avian disease, but to date no experimental study has tested the hypothesis that feeder contamination can directly impact disease status of visiting birds, especially in relation to the population of origin (i.e. urban v. rural, where feeder use/densities naturally vary dramatically). Here we used a field, feeder-cleaning experimental design to show that rural, but not urban, house finches (Haemorhous mexicanus) showed increased infection from a common coccidian endoparasite (Isospora spp.) when feeders were left uncleaned and that daily cleaning (with diluted bleach solution) over a 5-week period successfully decreased parasite burden. Moreover, this pattern in rural finches was true for males but not females. These experimental results reveal habitat- and sex-specific harmful effects of bird feeder use (i.e. when uncleaned in rural areas). Our study is the first to directly indicate to humans who maintain feeders for granivorous birds that routine cleaning can be critical for ensuring the health and viability of visiting avian species.
Evidence for competition and cannibalism in wormlions
Authors: Scharf Inon , Reshef May Hershkovitz , Avidov Bar , Ovadia Ofer 
Published: June 2021

AbstractTrap-building predators, such as web-building spiders and pit-building antlions, construct traps to capture their prey. These predators compete over sites that either enable the construction of suitable traps, are prey rich, or simply satisfy their abiotic requirements. We examined the effect of intraspecific competition over suitable space in pit-building wormlions. As expected, the ability of wormlions to select their favorable microhabitats—shaded or deep sand over lit or shallow sand—decreased with increasing density. Favorable microhabitats were populated more frequently by large than by small individuals and the density of individuals in the favorable microhabitat decreased with their increase in body mass. The advantage of large individuals in populating favorable microhabitats is nevertheless not absolute: both size categories constructed smaller pits when competing over a limited space compared to those constructed in isolation. The outcome of competition also depends on the type of habitat: deep sand is more important for large wormlions than small ones, while shade is similarly important for both size classes. Finally, in contrast to previous reports, cannibalism is shown here to be possible in wormlions. Its prevalence however is much lower compared to that documented in other trap-building predators. Our findings show that the advantage of large individuals over small ones should not be taken for granted, as it can depend on the environmental context. We present suggestions for the relative lack of competitive advantage of large wormlion individuals compared to other trap-building predators, which may stem from the absence of obvious weaponry, such as sharp mandibles.
Transmitted HIV drug resistance and subtype patterns among blood donors in Poland
Authors: Parczewski Miłosz , Sulkowska Ewa , Urbańska Anna , Scheibe Kaja , Serwin Karol , Grabarczyk Piotr 
Published: June 2021

AbstractSurveillance on the HIV molecular variability, risk of drug resistance transmission and evolution of novel viral variants among blood donors remains an understudied aspect of hemovigilance. This nationwide study analyses patterns of HIV diversity and transmitted resistance mutations. Study included 185 samples from the first time and repeat blood donors with HIV infection identified by molecular assay. HIV protease, reverse transcriptase and integrase were sequenced using population methods. Drug resistance mutation (DRM) patterns were analyzed based on the Stanford Interpretation Algorithm and standardized lists of transmitted mutations. Phylogeny was used to investigate subtyping, clustering and recombination patterns. HIV-1 subtype B (89.2%) followed by subtype A6 (7.6%) were predominant, while in three (1.6%) cases, novel recombinant B/A6 variants were identified. Non-B variants were more common among repeat donors (14.5%) compared to the first time ones (1.8%), p = 0.011, with higher frequency (9.9%) of A6 variant in the repeat donor group, p = 0.04. Major NRTI DRMs were observed in 3.8%, NNRTI and PI in 0.6% and INSTI 1.1% of cases. Additionally, E157Q polymorphism was observed in 9.8% and L74I in 11.5% of integrase sequences. Transmission of drug resistance among blood donors remains infrequent. Subtype patters increase in complexity with emergence of novel intersubtype A6B recombinants.
Large air pressure changes triggered by P-SV ground motion in a cave in northern Taiwan
Authors: Chen Chieh-Hung , Sun Yang-Yi , Lin Li-Ching , Han Peng , Yu Huai-Zhong , Zhang XueMin , Tang Chi-Chia , Chen Chun-Rong , Yen Horng-Yuan , Lin Cheng-Horng , Liu Jann-Yenq , Lin Ching-Ren 
Published: June 2021

AbstractAcoustic-gravity waves are generally considered to be one of the major factors that drive changes of the total electron content in the ionosphere. However, causal mechanisms of couplings between sources in the lithosphere and responses in the atmosphere and the ionosphere are not fully understood, yet. A barometer in the cave of the SBCB station records an unusual phenomenon of larger amplitudes in air pressure changes inside than those at the Xinwu station (outside). Accordingly, the comparison between the recorded data at the SBCB and Xinwu station can drive investigations of potential sources of the unusual phenomenon. Analytical results of phase angle differences reveal that the air pressure outside the cave at the Xinwu station often leads air pressure changes inside at the SBCB station at relatively low frequency bands. In contrast, the larger pressure changes at frequencies >  ~ 5 × 10–4 Hz inside the cave at the SBCB station lead smaller changes outside at the Xinwu station. To expose causal mechanisms of the unusual phenomenon, continuous seismic waveforms are further conducted for examination. When the horizontal and vertical ground velocities of ground vibrations yield a difference in the phase angle close to 90°, coherence values between the air pressure changes and ground vibrations become large. This suggests that the pressure-shear vertical ground vibrations can drive air pressure changes. Meanwhile, the results shed light on investigating the existence of acoustic waves near the Earth’s surface using a partially confined space underground due to that the assumptions of the waves can propagate upward into the atmosphere driving changes in the ionosphere.
Sex disparity in laparoscopic bariatric surgery outcomes: a matched-pair cohort analysis
Authors: Mousapour Pouria , Tasdighi Erfan , Khalaj Alireza , Mahdavi Maryam , Valizadeh Majid , Taheri Hamidreza , Hosseinpanah Farhad , Barzin Maryam 
Published: June 2021

AbstractMen have been historically considered to be higher-risk patients for bariatric surgery compared to women, the perception of which is suggested to be a barrier to bariatric surgery in men. The purpose of this study is to conduct a matched-pair analysis to evaluate sex disparities in laparoscopic bariatric surgery outcomes. Data on patients who underwent laparoscopic bariatric surgery from March 2013 to 2017 was collected prospectively. Then, 707 men and 707 women pair-matched for age, preoperative body mass index (BMI) and the procedure type (i.e., sleeve gastrectomy, Roux-en-Y, or one-anastomosis gastric bypass) were compared in terms of weight loss, remission of obesity-related comorbidities, and postoperative complications classified according to the Clavien–Dindo classification. There was no difference between the two sexes regarding the operation time, bleeding during surgery and length of postoperative hospital stay. We observed similar total weight loss, BMI loss, and percentage of excess BMI loss at 12, 24, and 36 months postoperatively between men and women, with no difference in remission of diabetes mellitus, hypertension and dyslipidemia at 12 months. The rate of in-hospital, 30-day and late complications according to Clavien–Dindo classification grades was similar between men and women. Our matched-pair cohort analysis demonstrated that bariatric surgery results in comparable short- and mid-term efficacy in men and women, and is associated with similar rate and severity of postoperative complications between sexes. These findings suggest bariatric surgeons not to consider sex for patient selection in bariatric surgery.
Perineural invasion as a risk factor for locoregional recurrence of invasive breast cancer
Authors: Narayan Priyanka , Flynn Jessica , Zhang Zhigang , Gillespie Erin F. , Mueller Boris , Xu Amy J. , Cuaron John , McCormick Beryl , Khan Atif J. , Cahlon Oren , Powell Simon N. , Wen Hannah , Braunstein Lior Z. 
Published: June 2021

AbstractPerineural invasion (PNI) is a pathologic finding observed across a spectrum of solid tumors, typically with adverse prognostic implications. Little is known about how the presence of PNI influences locoregional recurrence (LRR) among breast cancers. We evaluated the association between PNI and LRR among an unselected, broadly representative cohort of breast cancer patients, and among a propensity-score matched cohort. We ascertained breast cancer patients seen at our institution from 2008 to 2019 for whom PNI status and salient clinicopathologic features were available. Fine-Gray regression models were constructed to evaluate the association between PNI and LRR, accounting for age, tumor size, nodal involvement, estrogen receptor (ER), progesterone receptor (PR), HER2 status, histologic tumor grade, presence of lymphovascular invasion (LVI), and receipt of chemotherapy and/or radiation. Analyses were then refined by comparing PNI-positive patients to a PNI-negative cohort defined by propensity score matching. Among 8864 invasive breast cancers, 1384 (15.6%) were noted to harbor PNI. At a median follow-up of 6.3 years, 428 locoregional recurrence events were observed yielding a 7-year LRR of 7.1% (95% CI 5.5–9.1) for those with PNI and 4.7% (95% CI 4.2–5.3; p = 0.01) for those without. On univariate analysis throughout the entire cohort, presence of PNI was significantly associated with an increased risk of LRR (HR 1.39, 95% CI 1.08–1.78, p < 0.01). Accounting for differences in salient clinicopathologic and treatment parameters by multivariable Fine-Gray regression modeling, the association between PNI and LRR was potentiated (HR 1.57, 95% CI 1.2–2.07, p = 0.001). We further conducted propensity score matching to balance clinicopathologic parameters and treatments between the two groups (PNI vs not), again showing a similar significant association between PNI and LRR (HR 1.46, 95% CI 1.03–2.08, p = 0.034). PNI is significantly associated with LRR following the definitive treatment of invasive breast cancer. The excess risk conferred by PNI is similar in magnitude to that observed with LVI, or by ER/PR negativity. Breast cancer prognostication and therapeutic decision-making should consider the presence of PNI among other salient risk factors. Larger studies among more uniform breast cancer presentations may elucidate the extent to which these findings apply across breast cancer subtypes and stages.
Homeostasis of mucosal glial cells in human gut is independent of microbiota
Authors: Inlender Timna , Nissim-Eliraz Einat , Stavely Rhian , Hotta Ryo , Goldstein Allan M. , Yagel Simcha , Gutnick Michael J. , Shpigel Nahum Y. 
Published: June 2021

AbstractIn mammals, neural crest cells populate the gut and form the enteric nervous system (ENS) early in embryogenesis. Although the basic ENS structure is highly conserved across species, we show important differences between mice and humans relating to the prenatal and postnatal development of mucosal enteric glial cells (mEGC), which are essential ENS components. We confirm previous work showing that in the mouse mEGCs are absent at birth, and that their appearance and homeostasis depends on postnatal colonization by microbiota. In humans, by contrast, a network of glial cells is already present in the fetal gut. Moreover, in xenografts of human fetal gut maintained for months in immuno-compromised mice, mEGCs persist following treatment with antibiotics that lead to the disappearance of mEGCs from the gut of the murine host. Single cell RNAseq indicates that human and mouse mEGCs differ not only in their developmental dynamics, but also in their patterns of gene expression.
Majority and popularity effects on norm formation in adolescence
Authors: Pinho Ana da Silva , Molleman Lucas , Braams Barbara R. , van den Bos Wouter 
Published: June 2021

AbstractPersonal norms consist of individuals’ attitudes about the appropriateness of behaviour. These norms guide adolescents’ behaviour in countless domains that are fundamental for their social functioning and well-being. Peers are known to have a marked influence on adolescent risk-taking and prosocial behaviour, but little is known about how peers shape personal norms underlying those behaviours. Here we show that adolescents’ personal norms are decisively moulded by the norms of the majority and popular peers in their social network. Our experiment indicates that observing peer norms substantially impacts adolescents’ normative evaluation of risk-taking and prosocial behaviours. The majority norm had a stronger impact than the norm of a single popular peer, and norm adjustments were largest when adolescents observed strong disapproval of risk-taking or strong approval of prosocial behaviour. Our study suggests that learning about peer norms likely promotes adolescents to hold views and values supporting socially desirable behaviour.