bluuebunny/crossref_metadata_2025_split huggingface dataset:
Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples
Authors: McHugh Aoife J. , Yap Min , Crispie Fiona , Feehily Conor , Hill Colin , Cotter Paul D. 
Published: February 2021

AbstractEfficient and accurate identification of microorganisms throughout the food chain can potentially allow the identification of sources of contamination and the timely implementation of control measures. High throughput DNA sequencing represents a potential means through which microbial monitoring can be enhanced. While Illumina sequencing platforms are most typically used, newer portable platforms, such as the Oxford Nanopore Technologies (ONT) MinION, offer the potential for rapid analysis of food chain microbiomes. Initial assessment of the ability of rapid MinION-based sequencing to identify microbes within a simple mock metagenomic mixture is performed. Subsequently, we compare the performance of both ONT and Illumina sequencing for environmental monitoring of an active food processing facility. Overall, ONT MinION sequencing provides accurate classification to species level, comparable to Illumina-derived outputs. However, while the MinION-based approach provides a means of easy library preparations and portability, the high concentrations of DNA needed is a limiting factor.
Immunogenicity of standard, high-dose, MF59-adjuvanted, and recombinant-HA seasonal influenza vaccination in older adults
Authors: Li Athena P. Y. , Cohen Carolyn A. , Leung Nancy H. L. , Fang Vicky J. , Gangappa Shivaprakash , Sambhara Suryaprakash , Levine Min Z. , Iuliano A. Danielle , Perera Ranawaka A. P. M. , Ip Dennis K. M. , Peiris J. S. Malik , Thompson Mark G. , Cowling Benjamin J. , Valkenburg Sophie A. 
Published: February 2021

AbstractThe vaccine efficacy of standard-dose seasonal inactivated influenza vaccines (S-IIV) can be improved by the use of vaccines with higher antigen content or adjuvants. We conducted a randomized controlled trial in older adults to compare cellular and antibody responses of S-IIV versus enhanced vaccines (eIIV): MF59-adjuvanted (A-eIIV), high-dose (H-eIIV), and recombinant-hemagglutinin (HA) (R-eIIV). All vaccines induced comparable H3-HA-specific IgG and elevated antibody-dependent cellular cytotoxicity (ADCC) activity at day 30 post vaccination. H3-HA-specific ADCC responses were greatest following H-eIIV. Only A-eIIV increased H3-HA-IgG avidity, HA-stalk IgG and ADCC activity. eIIVs also increased polyfunctional CD4+ and CD8+ T cell responses, while cellular immune responses were skewed toward single-cytokine-producing T cells among S-IIV subjects. Our study provides further immunological evidence for the preferential use of eIIVs in older adults as each vaccine platform had an advantage over the standard-dose vaccine in terms of NK cell activation, HA-stalk antibodies, and T cell responses.
Bacterial and fungal endophyte communities in healthy and diseased oilseed rape and their potential for biocontrol of Sclerotinia and Phoma disease
Authors: Schmidt C. S. , Mrnka L. , Lovecká P. , Frantík T. , Fenclová M. , Demnerová K. , Vosátka M. 
Published: February 2021

AbstractPhoma stem canker (caused by the ascomycetes Leptosphaeria maculans and Leptosphaeria biglobosa) is an important disease of oilseed rape. Its effect on endophyte communities in roots and shoots and the potential of endophytes to promote growth and control diseases of oilseed rape (OSR) was investigated. Phoma stem canker had a large effect especially on fungal but also on bacterial endophyte communities. Dominant bacterial genera were Pseudomonas, followed by Enterobacter, Serratia, Stenotrophomonas, Bacillus and Staphylococcus. Achromobacter, Pectobacter and Sphingobacterium were isolated only from diseased plants, though in very small numbers. The fungal genera Cladosporium, Botrytis and Torula were dominant in healthy plants whereas Alternaria, Fusarium and Basidiomycetes (Vishniacozyma, Holtermaniella, Bjerkandera/Thanatephorus) occurred exclusively in diseased plants. Remarkably, Leptosphaeria biglobosa could be isolated in large numbers from shoots of both healthy and diseased plants. Plant growth promoting properties (antioxidative activity, P-solubilisation, production of phytohormones and siderophores) were widespread in OSR endophytes. Although none of the tested bacterial endophytes (Achromobacter, Enterobacter, Pseudomonas, Serratia and Stenotrophomonas) promoted growth of oilseed rape under P-limiting conditions or controlled Phoma disease on oilseed rape cotyledons, they significantly reduced incidence of Sclerotinia disease. In the field, a combined inoculum consisting of Achromobacter piechaudii, two pseudomonads and Stenotrophomonas rhizophila tendencially increased OSR yield and reduced Phoma stem canker.
Comparison of cord blood hematological parameters among normal, α-thalassemia, and β-thalassemia fetuses between 17 and 38 weeks of gestation
Authors: Zhan Wenli , Guo Hao , Hu Siqi , Wang Jicheng , Qin Danqing , Liang Juqing , Du Li , Luo Mingyong 
Published: February 2021

AbstractThe aim of this study was to retrospectively compare hematological parameters among normal, α-, and β-thalassemia fetuses between 17 and 38 weeks of gestation. Pregnant women at risk of having fetuses with thalassemia major and underwent cordocentesis for prenatal diagnosis were recruited. Fetal cord blood samples were collected from 249 fetuses for hematological and DNA analysis. Fetuses were divided into subgroups according to thalassemia DNA genotypes. The average and gestational age of subjects were 27.95 ± 5.78 years and 27.78 ± 3.57 weeks, respectively. The distribution of α-thalassemia, β-thalassemia, and normal cases was 67.87%, 19.68%, and 12.45%, respectively. Significant differences in almost all the hematological parameters (HbF, HbA, Hb, HCT, MCV, MCH, MCHC, RDW, and NBRCs) were observed in three groups (P < 0.001, except for RBC, P = 0.446). These differences were also observed in four α-thalassemia subgroups (P < 0.001) and were associated with the number of defected genes. Similarly, in five β-thalassemia genotypes, HbF, HbA, RBC, MCV, MCH and NBRCs were presented differently (P < 0.05). Additionally, the trends in RBC, Hb, and HCT changes in three α-thalassemia subgroups (silent carrier, trait, and major) and β+/β+ fetuses’ MCV, MCH, and RDW levels with gestation age were opposite to those of normal fetuses. We compared the distribution of hematological parameters in fetuses affected by most genotypes of thalassemia, as well as their trends in relation to gestational age for the first time, which is a good reference for future studies and prenatal diagnostic practices. The investigated hematological parameters are also valuable in diagnosing and differentiating thalassemia.
Differential roles of ARID1B in excitatory and inhibitory neural progenitors in the developing cortex
Authors: Moffat Jeffrey J. , Jung Eui-Man , Ka Minhan , Jeon Byeong Tak , Lee Hyunkyoung , Kim Woo-Yang 
Published: February 2021

AbstractGenetic evidence indicates that haploinsufficiency of ARID1B causes intellectual disability (ID) and autism spectrum disorder (ASD), but the neural function of ARID1B is largely unknown. Using both conditional and global Arid1b knockout mouse strains, we examined the role of ARID1B in neural progenitors. We detected an overall decrease in the proliferation of cortical and ventral neural progenitors following homozygous deletion of Arid1b, as well as altered cell cycle regulation and increased cell death. Each of these phenotypes was more pronounced in ventral neural progenitors. Furthermore, we observed decreased nuclear localization of β-catenin in Arid1b-deficient neurons. Conditional homozygous deletion of Arid1b in ventral neural progenitors led to pronounced ID- and ASD-like behaviors in mice, whereas the deletion in cortical neural progenitors resulted in minor cognitive deficits. This study suggests an essential role for ARID1B in forebrain neurogenesis and clarifies its more pronounced role in inhibitory neural progenitors. Our findings also provide insights into the pathogenesis of ID and ASD.
Organic light-emitting devices based on conducting polymer treated with benzoic acid
Authors: Kang Hwa Seung , Kim Dae Hun , Kim Tae Whan 
Published: February 2021

AbstractWe report on the enhanced conductivity of the benzoic-acid-treated poly(3,4-ethlenedioxythiophene):poly(styrene sulfonate) (PEDOT:PSS) electrode for use in highly flexible, organic light-emitting devices (OLEDs). The conductivity of the benzoic-acid-treated PEDOT:PSS electrode increased from 1 to 1583.2 S/cm, in comparison with that of the pristine PEDOT:PSS electrode, due to a complex factor of the H+ mole % and the dielectric constant of the benzoic solution. Among the post-treatment methods of the PEDOT:PSS electrodes, the operating voltage at 1000 cd/m2 of OLEDs fabricated utilizing the PEDOT:PSS electrode with the benzoic acid treatment has the lowest value, and its maximum luminance is 24,400 cd/m2, which are 1.54 and 2.15 times higher than those of OLEDs using PEDOT:PSS electrodes treated with dimethyl sulfoxide and methanol, respectively. The luminance of a flexible OLED with a benzoic-acid-treated PEDOT:PSS electrode after 1400 bending cycles decreased to 83% of the initial luminance, resulting in excellent mechanical stability.
New indices to characterize drawing behavior in humans (Homo sapiens) and chimpanzees (Pan troglodytes)
Authors: Martinet Lison , Sueur Cédric , Hirata Satoshi , Hosselet Jérôme , Matsuzawa Tetsuro , Pelé Marie 
Published: February 2021

AbstractTechniques used in cave art suggest that drawing skills emerged long before the oldest known representative human productions (44,000 yearsbc). This study seeks to improve our knowledge of the evolutionary origins and the ontogenetic development of drawing behavior by studying drawings of humans (N = 178, 3- to 10-year-old children and adults) and chimpanzees (N = 5). Drawings were characterized with an innovative index based on spatial measures which provides the degree of efficiency for the lines that are drawn. Results showed that this index was lowest in chimpanzees, increased and reached its maximum between 5-year-old and 10-year-old children and decreased in adults, whose drawing efficiency was reduced by the addition of details. Drawings of chimpanzees are not random suggesting that their movements are constrained by cognitive or locomotor aspect and we cannot conclude to the absence of representativeness. We also used indices based on colors and time and asked children about what they drew. These indices can be considered relevant tools to improve our understanding of drawing development and evolution in hominids.
An integrated life cycle and water footprint assessment of nonfood crops based bioenergy production
Authors: Li Jun , Xiong Fengyin , Chen Zhuo 
Published: February 2021

AbstractBiomass gasification, especially distribution to power generation, is considered as a promising way to tackle global energy and environmental challenges. However, previous researches on integrated analysis of the greenhouse gases (GHG) abatement potentials associated with biomass electrification are sparse and few have taken the freshwater utilization into account within a coherent framework, though both energy and water scarcity are lying in the central concerns in China’s environmental policy. This study employs a Life cycle assessment (LCA) model to analyse the actual performance combined with water footprint (WF) assessment methods. The inextricable trade-offs between three representative energy-producing technologies are explored based on three categories of non-food crops (maize, sorghum and hybrid pennisetum) cultivated in marginal arable land. WF results demonstrate that the Hybrid pennisetum system has the largest impact on the water resources whereas the other two technology options exhibit the characteristics of environmental sustainability. The large variances in contribution ratio between the four sub-processes in terms of total impacts are reflected by the LCA results. The Anaerobic Digestion process is found to be the main contributor whereas the Digestate management process is shown to be able to effectively mitigate the negative environmental impacts with an absolute share. Sensitivity analysis is implemented to detect the impacts of loss ratios variation, as silage mass and methane, on final results. The methane loss has the largest influence on the Hybrid pennisetum system, followed by the Maize system. Above all, the Sorghum system demonstrates the best performance amongst the considered assessment categories. Our study builds a pilot reference for further driving large-scale project of bioenergy production and conversion. The synergy of combined WF-LCA method allows us to conduct a comprehensive assessment and to provide insights into environmental and resource management.
Pore-scale effects during the transition from capillary- to viscosity-dominated flow dynamics within microfluidic porous-like domains
Authors: Yiotis A. , Karadimitriou N. K. , Zarikos I. , Steeb H. 
Published: February 2021

AbstractWe perform a numerical and experimental study of immiscible two-phase flows within predominantly 2D transparent PDMS microfluidic domains with disordered pillar-like obstacles, that effectively serve as artificial porous structures. Using a high sensitivity pressure sensor at the flow inlet, we capture experimentally the pressure dynamics under fixed flow rate conditions as the fluid–fluid interface advances within the porous domain, while also monitoring the corresponding phase distribution patterns using optical microscopy. Our experimental study covers 4 orders of magnitude with respect to the injection flow rate and highlights the characteristics of immiscible displacement processes during the transition from the capillarity-controlled interface displacement regime at lower flow rates, where the pores are invaded sequentially in the form of Haines jumps, to the viscosity-dominated regime, where multiple pores are invaded simultaneously. In the capillary regime, we recover a clear correlation between the recorded inlet pressure and the pore-throat diameter invaded by the interface that follows the Young–Laplace equation, while during the transition to the viscous regime such a correlation is no longer evident due to multiple pore-throats being invaded simultaneously (but also due to significant viscous pressure drop along the inlet and outlet channels, that effectively mask capillary effects). The performed experimental study serves for the validation of a robust Level-Set model capable of explicitly tracking interfacial dynamics at sub-pore scale resolutions under identical flow conditions. The numerical model is validated against both well-established theoretical flow models, that account for the effects of viscous and capillary forces on interfacial dynamics, and the experimental results obtained using the developed microfluidic setup over a wide range of capillary numbers. Our results show that the proposed numerical model recovers very well the experimentally observed flow dynamics in terms of phase distribution patterns and inlet pressures, but also the effects of viscous flow on the apparent (i.e. dynamic) contact angles in the vicinity of the pore walls. For the first time in the literature, this work clearly shows that the proposed numerical approach has an undoubtable strong potential to simulate multiphase flow in porous domains over a wide range of Capillary numbers.
Improving the sexual activity and reproduction of female zebrafish with high testosterone levels
Authors: Liu Congcong , Yue Sophie , Solarz Joshua , Lee Jessica , Li Lei 
Published: February 2021

AbstractHigh levels of testosterone cause clinical symptoms in female reproduction and possibly, alterations in sexuality. Yet, the underlying mechanisms remain to be examined. Here, we report a study that investigates the effects of testosterone in follicle development and sexual mating using zebrafish models. We developed an acute zebrafish model with high testosterone levels by exposing young female zebrafish to testosterone dissolved in swimming water. After given a high concentration of testosterone treatment (e.g., 100 ng/ml), the fish showed hallmark pathological symptoms similar to those displayed in patients with polycystic ovary syndrome (PCOS), such as follicular growth-arrest, rare ovulation, ovary enlargement, decrease in reproduction, and down regulation of the expression of some PCOS susceptible genes, such as Tox3. These fish are referred to as the PCOS fish. By monitoring mating-like swimming behaviors, we measured the sexual activity of PCOS zebrafish. In general, the PCOS fish showed no desire to interact with males. As a consequence, their mating rate was decreased as compared to control animals. The sexuality levels of PCOS fish, however, could be improved after short periods of rearing in conditions that lack of males. After only 3 days of rearing alone, the PCOS fish showed an increase in sexuality levels and displayed characteristic swimming patterns for mating. After 30 days of separation from males, not only the sexual activity, but also the mating rate was improved in the PCOS fish. Together, the data suggests that zebrafish can serve as a new type of research model to further develop strategies for the treatment of reproductive disorders, such as those related to PCOS.
Monitoring oil spill in Norilsk, Russia using satellite data
Authors: Rajendran Sankaran , Sadooni Fadhil N. , Al-Kuwari Hamad Al-Saad , Oleg Anisimov , Govil Himanshu , Nasir Sobhi , Vethamony Ponnumony 
Published: February 2021

AbstractThis paper studies the oil spill, which occurred in the Norilsk and Taimyr region of Russia due to the collapse of the fuel tank at the power station on May 29, 2020. We monitored the snow, ice, water, vegetation and wetland of the region using data from the Multi-Spectral Instruments (MSI) of Sentinel-2 satellite. We analyzed the spectral band absorptions of Sentinel-2 data acquired before, during and after the incident, developed true and false-color composites (FCC), decorrelated spectral bands and used the indices, i.e. Snow Water Index (SWI), Normalized Difference Water Index (NDWI) and Normalized Difference Vegetation Index (NDVI). The results of decorrelated spectral bands 3, 8, and 11 of Sentinel-2 well confirmed the results of SWI, NDWI, NDVI, and FCC images showing the intensive snow and ice melt between May 21 and 31, 2020. We used Sentinel-2 results, field photographs, analysis of the 1980–2020 daily air temperature and precipitation data, permafrost observations and modeling to explore the hypothesis that either the long-term dynamics of the frozen ground, changing climate and environmental factors, or abnormal weather conditions may have caused or contributed to the collapse of the oil tank.
The effects of soil freeze–thaw processes on water and salt migrations in the western Songnen Plain, China
Authors: Qin Yan , Bai Yufeng , Chen Guoshuang , Liang Yunjiang , Li Xiaoyu , Wen Bolong , Lu Xinrui , Li Xiujun 
Published: February 2021

AbstractSeasonally freeze-thaw (FT) processes affect soil salinisation in cold and arid regions. Therefore, understanding the mechanisms behind soil salinisation during winter and spring is crucial for management strategies effectively alleviating this. This study aimed to explore the soil FT characteristics and their influences on soil water and salt migrations to clarify the underlying mechanism of the springtime soil salinisation in the western Songnen Plain, China. The spatiotemporal distributions of soil water and salt, frozen depths and soil temperatures were examined at depths of 0–200 cm in three typical landscapes (farmland, Leymus chinensis (Trin.) Tzvel (LT) grassland and alkali-spot (AS) land) from October 2015 to June 2016. Results indicated that the strongest freezing process occurred in AS land, which was characterised by the deepest frost depth (165 cm) and highest freezing rate (3.58 cm/d), followed by LT grassland, and then farmland. The freeze-induced upward redistribution and enrichment of soil water and salt caused the rise and expansion of the soil salification layer, which was the main source of explosive accumulations of surface salt in springtime. Therefore, the FT processes contributed to the surface soil salinisation and alkalisation. Landscapes also affected soil water and salt migrations during FT processes, with the trend being AS land > LT grassland > farmland.
Raman spectroscopy and group and basis-restricted non negative matrix factorisation identifies radiation induced metabolic changes in human cancer cells
Authors: Milligan Kirsty , Deng Xinchen , Shreeves Phillip , Ali-Adeeb Ramie , Matthews Quinn , Brolo Alexandre , Lum Julian J. , Andrews Jeffrey L. , Jirasek Andrew 
Published: February 2021

AbstractThis work combines single cell Raman spectroscopy (RS) with group and basis restricted non-negative matrix factorisation (GBR-NMF) to identify individual biochemical changes associated with radiation exposure in three human cancer cell lines. The cell lines analysed were derived from lung (H460), breast (MCF7) and prostate (LNCaP) tissue and are known to display varying degrees of radio sensitivity due to the inherent properties of each cell type. The GBR-NMF approach involves the deconstruction of Raman spectra into component biochemical bases using a library of Raman spectra of known biochemicals present in the cells. Subsequently, scores are obtained on each of these bases which can be directly correlated with the contribution of each chemical to the overall Raman spectrum. We validated GBR-NMF through the correlation of GBR-NMF-derived glycogen scores with scores that were previously observed using principal component analysis (PCA). Phosphatidylcholine, glucose, arginine and asparagine showed a distinct differential score pattern between radio-resistant and radio-sensitive cell types. In summary, the GBR-NMF approach allows for the monitoring of individual biochemical radiation-response dynamics previously unattainable with more traditional PCA-based approaches.
Insights into the role of diet and dietary flavanols in cognitive aging: results of a randomized controlled trial
Authors: Sloan Richard P. , Wall Melanie , Yeung Lok-Kin , Feng Tianshu , Feng Xinyang , Provenzano Frank , Schroeter Hagen , Lauriola Vincenzo , Brickman Adam M. , Small Scott A. 
Published: February 2021

AbstractWith the world's population aging, age-related memory decline is an impending cognitive epidemic. Assessing the impact of diet on cognitive aging, we conducted a controlled, randomized, parallel-arm dietary intervention with 211 healthy adults (50–75 years) investigating effects of either a placebo or 260, 510 and 770 mg/day of cocoa flavanols for 12-weeks followed by 8-weeks washout. The primary outcome was a newly-developed object-recognition task localized to the hippocampus’ dentate gyrus. Secondary outcomes included a hippocampal-dependent list-learning task and a prefrontal cortex-dependent list-sorting task. The alternative Healthy Eating Index and a biomarker of flavanol intake (gVLM) were measured. In an MRI substudy, hippocampal cerebral blood volume was mapped. Object-recognition and list-sorting performance did not correlate with baseline diet quality and did not improve after flavanol intake. However, the hippocampal-dependent list-learning performance was directly associated with baseline diet quality and improved after flavanol intake, particularly in participants in the bottom tertile of baseline diet quality. In the imaging substudy, a region-of-interest analysis was negative but a voxel-based-analysis suggested that dietary flavanols target the dentate gyrus. While replication is needed, these findings suggest that diet in general, and dietary flavanols in particular, may be associated with memory function of the aging hippocampus and normal cognitive decline.