bluuebunny/crossref_metadata_2025_split huggingface dataset:
Evaluating natural variation, heritability, and genetic advance of photosynthetic traits in rice (Oryza sativa)
Authors: Acevedo‐Siaca Liana G. , Coe Robert , Quick W. Paul , Long Stephen P. 
Published: September 2021

AbstractDespite significant advances to harvest index and interception efficiency, photosynthesis has remained largely unimproved through conventional breeding approaches. However, increasing photosynthetic efficiency is a key method for enhancing crop productivity, yield, and sustainability. In this study, photosynthetic and morphological traits were characterized in indica rice to examine natural variation and the potential for hybridization in the future. Additionally, broad‐sense heritability (H2) was calculated for photosynthetic traits, including, for the first time, biochemical limitations to photosynthesis. Heritability was high for CO2 assimilation in saturating light and [CO2] (Amax; H2 = .65), the maximum rate of carboxylation (Vc,max; H2 = .63), the maximum rate of electron transport (Jmax; H2 = .68), and triosephosphate utilization (TPU; H2 = .73). Genetic advances of up to 17.7% were estimated, suggesting that it would be possible to not only select for the improvement of biochemical components of photosynthesis but also achieve significant gains in one generation. Heritability was low for CO2 assimilation at ambient [CO2] in saturating light (Asat; H2 = .22), suggesting that rising [CO2] may increase heritability for photosynthesis in rice.
Trace elements mineral chemistry of sulfides from the Woxi Au‐Sb‐W deposit, southern China
Authors: Zhou Zhekai , Yonezu Kotaro , Imai Akira , Tindell Thomas , Li Huan , Gabo‐Ratio Jillian Aira 
Published: September 2021

AbstractThe Woxi Au‐Sb‐W deposit is one of the largest polymetallic ore deposits in the Xuefengshan Range, southern China, hosted in low‐grade metamorphosed Neoproterozoic volcaniclastic rocks. The orebodies of the deposit are predominantly composed of banded quartz veins, which are strictly controlled by bedding and faults. Petrographic observations and geochemical results are reported on the occurrence of Au and properties of the ore‐forming processes for different stages in the deposit. The veins extend vertically up to 2 km without obvious vertical metal zoning. The ore‐forming process can be subdivided into four mineralization stages: Pre‐ore stage; Early stage (scheelite‐quartz stage); Middle stage (pyrite‐stibnite‐quartz stage); and Late stage (stibnite‐quartz sage). Four types of pyrite (Py0, Py1, Py2, and Py3) were identified in the ores and host‐rock: Py0 occurs as euhedral grains with voids in the core, ranging in size from 50 to 100 μm and formed mainly in the Pre‐ore stage and Early stage; Py1 occurs as subhedral grains. Small grains (around 10 μm) of Py1 form irregularly shaped clusters of variable size ranging from tens to hundreds of μm and mainly formed in the Middle stage; Euhedral‐subhedral fine‐grained Py2 formed in the Late stage; Minor subhedral fine‐grained Py3 was deposited in the Late‐stage. Stibnite is widely distributed in the Middle and Late stage ore veins. No systemic difference was recognized in mineralogical features among stibnite formed in different stages. In addition to native gold, the lattice bound Au+1 widely exists in Py1 and Py2 in the deposit, and widespread Py1 is considered as the main Au‐bearing mineral with the highest Au contents. Most elements (such as Co, Ni, Cu, As, Sb, Ba, and Pb) are considered to occur as solid solution within the crystal lattice and/or invisible nanoparticles in sulfides minerals. The Co/Ni ratio of most pyrite is lower than 1, suggesting that the metals in the ore‐forming fluid are sourced from sedimentary rocks. The coupled behavior between Au and As; Au and Sb suggests that the substitution of As and Sb in pyrite can enhance the incorporation of Au. Variation of trace elements in pyrites of different stages suggests some information on the mineralization processes: Large ion lithophile elements (such as Ba and Pb) are enriched in Py0 indicating that water‐rock reaction occurred in the Early stage; Fine‐grained Py1 with a heterogeneous distribution of elements suggests fast crystallization of pyrite in the Middle stage.
How People Understand Risk Matrices, and How Matrix Design Can Improve their Use: Findings from Randomized Controlled Studies
Authors: Sutherland Holly , Recchia Gabriel , Dryhurst Sarah , Freeman Alexandra L.J. 
Published: September 2021

AbstractRisk matrices are a common way to communicate the likelihood and potential impacts of a variety of risks. Until now, there has been little empirical work on their effectiveness in supporting understanding and decision making, and on how different design choices affect these. In this pair of online experiments (total n = 2699), we show that risk matrices are not always superior to text for the presentation of risk information, and that a nonlinear/geometric labeling scheme helps matrix comprehension (when the likelihood/impact scales are nonlinear). To a lesser degree, results suggested that changing the shape of the matrix so that cells increase in size nonlinearly facilitates comprehension as compared to text alone, and that comprehension might be enhanced by integrating further details about the likelihood and impact onto the axes of the matrix rather than putting them in a separate key. These changes did not affect participants’ preference for reducing impact over reducing likelihood when making decisions about risk mitigation. We recommend that designers of risk matrices consider these changes to facilitate better understanding of relationships among risks.
Muscle Activation in the Shoulder Girdle and Lumbopelvic-Hip Complex During Common Therapeutic Exercises
Authors: Devorski Luk , M. Bazett-Jones David , Mangum L. Colby , Glaviano Neal R. 
Published: September 2021

Context: Lumbopelvic-hip complex (LPHC) exercises are used to increase stabilization within the human body. Torso-elevated side support (TESS), foot-elevated side support (FESS), prone bridge plank (PBP), and V-sit are common LPHC exercises. Objective: To evaluate muscle activation in the shoulder girdle and LPHC during 4 LPHC exercises and evaluate the reasoning for termination. Study Design: Cross-sectional study. Setting: Laboratory. Patients or Other Participants: Seventeen healthy participants (12 males and 5 females; age: 21.47 [3.16] y, height: 179.73 [8.92] cm, mass: 76.89 [11.17] kg). Main Outcome Measures: Participants completed 2 repetitions of the TESS, FESS, PBP, and V-sit until failure. Surface electromyography of the middle deltoid, latissimus dorsi, middle trapezius, rectus abdominis, erector spinae, external oblique, and gluteus medius were recorded and normalized to maximum voluntary isometric contraction (MVIC). The duration of exercise and subjective reasoning for termination of exercise was completed following the 4 tasks. Results: The TESS and PBP had significantly greater middle deltoid muscle activation (TESS: 55.66% [24.45%] MVIC and PBP: 42.63% [18.25%] MVIC) compared with the FESS (10.10% [10.04%] MVIC) and V-sit (2.21% [1.94%] MVIC), P < .05. The TESS produced significantly greater external oblique activity (78.13% [32.32%] MVIC) than the PBP (54.99% [19.54%] MVIC), P < .05. Due to shoulder fatigue and pain, 41.1% and 17.0% of participants terminated the TESS, respectively. The PBP was terminated due to abdominal fatigue (41.1%) and upper-extremity fatigue (47.0%). Conclusions: The V-sit resulted in isolated activity of the abdominal portion of the LPHC. The FESS had increased global co-contraction of the LPHC compared with the TESS. The PBP and TESS had significant muscle activation in the upper-extremity.
Responses of physicians to an objective safety and quality knowledge test: a cross-sectional study
Authors: Burke Harry B , King Heidi B 
Published: September 2021

ObjectiveFor physicians to practice safe high quality medicine they must have sufficient safety and quality knowledge. Although a great deal is known about the safety and quality perceptions, attitudes and beliefs of physicians, little is known about their safety and quality knowledge. This study tested the objective safety and quality knowledge of practicing US primary care physicians.DesignCross-sectional objective test of safety and quality knowledge.SettingPrimary care physicians practicing in the USA.ParticipantsStudy consisted of 518 US practicing primary care physicians who answered an email invitation. Fifty-four percent were family medicine and 46% were internal medicine physicians.The response rate was 66%.InterventionThe physicians took a 24-question multiple-choice test over the internet.OutcomeThe outcome was the percent correct.ResultsThe average number of correct answers was 11.4 (SD, 2.69), 48% correct. Three common clinical vignettes questions were answered correctly by 45% of the physicians. Five common radiation exposures questions were answered correctly by 40% of the physicians. Seven common healthcare quality and safety questions were answered correctly by 43% of the physicians. Seven Donabedian’s model of structure, process and outcome measure questions were answered correctly by 67% of the physicians. Two Institute of Medicine’s definitions of quality and safety questions were answered correctly by 19.5% of the physicians.ConclusionForty-eight per cent of the physicians’ answers to the objective safety and quality questions were correct. To our knowledge, this is the first assessment of the objective safety and quality knowledge of practicing US primary care physicians.
Adolescent alcohol use in Estonia compared with Latvia, Lithuania, Finland and Sweden: results from cross-sectional surveys, 2003–2015
Authors: Kudre Daisy , Vorobjov Sigrid , Ringmets Inge , Pärna Kersti 
Published: September 2021

ObjectivesThe aims of the study were (1) to describe trends in the prevalence of monthly alcohol use from 2003 to 2015 and (2) to analyse the associations between alcohol use and family-related and school-related factors, risk behaviours and perceived alcohol availability in Estonia compared with Latvia, Lithuania, Finland and Sweden.MethodsThe study used nationally representative data of 15–16-year-old adolescents from the European School Survey Project on Alcohol and Other Drugs. Data from Estonia, Latvia, Lithuania, Finland and Sweden collected in 2003, 2007, 2011 and 2015 were utilised (n=57 779). The prevalence of monthly alcohol use including light and strong alcohol use was calculated for each study year. A χ2test for trend was used to evaluate statistically significant changes in alcohol use over the study period. A multilevel logistic regression analysis was used for assessing the association between alcohol use and explanatory factors. Marginal ORs with 95% CIs for each country were calculated.ResultsMonthly alcohol use decreased significantly among boys and girls in all countries from 2003 to 2015. In 2015, the prevalence of monthly alcohol use among boys was 36.1% in Estonia, 44.3% in Latvia, 32.4% in Lithuania, 32.3% in Finland and 22.4% in Sweden. Among girls, it was 39.1%, 45.9%, 35.6%, 31.8% and 29.1%, respectively. In all countries, higher odds of monthly alcohol use were observed among adolescents who skipped school, smoked cigarettes, used cannabis, perceived alcohol to be easy to access and had parents who did not know always/often about their child’s whereabouts on Saturday nights. Compared with Estonia, associations between alcohol use and explanatory factors were similar in Latvia and Lithuania but different in Finland and Sweden.ConclusionResults of cross-national comparison of alcohol use and explanatory factors could be effectively used to further decrease alcohol use among adolescents.
Potential solutions for screening, triage, and severity scoring of suspected COVID-19 positive patients in low-resource settings: a scoping review
Authors: Hirner Sarah , Pigoga Jennifer Lee , Naidoo Antoinette Vanessa , Calvello Hynes Emilie J , Omer Yasein O , Wallis Lee A , Bills Corey B 
Published: September 2021

ObjectivesPurposefully designed and validated screening, triage, and severity scoring tools are needed to reduce mortality of COVID-19 in low-resource settings (LRS). This review aimed to identify currently proposed and/or implemented methods of screening, triaging, and severity scoring of patients with suspected COVID-19 on initial presentation to the healthcare system and to evaluate the utility of these tools in LRS.DesignA scoping review was conducted to identify studies describing acute screening, triage, and severity scoring of patients with suspected COVID-19 published between 12 December 2019 and 1 April 2021. Extracted information included clinical features, use of laboratory and imaging studies, and relevant tool validation data.ParticipantThe initial search strategy yielded 15 232 articles; 124 met inclusion criteria.ResultsMost studies were from China (n=41, 33.1%) or the United States (n=23, 18.5%). In total, 57 screening, 23 triage, and 54 severity scoring tools were described. A total of 51 tools−31 screening, 5 triage, and 15 severity scoring—were identified as feasible for use in LRS. A total of 37 studies provided validation data: 4 prospective and 33 retrospective, with none from low-income and lower middle-income countries.ConclusionsThis study identified a number of screening, triage, and severity scoring tools implemented and proposed for patients with suspected COVID-19. No tools were specifically designed and validated in LRS. Tools specific to resource limited contexts is crucial to reducing mortality in the current pandemic.
Cohort profile: a migratory cohort study of US Marines who train in Australia
Authors: Chan-Cuzydlo Alyssa , Harrison Dustin J , Pike Brian L , Currie Bart J , Mayo Mark , Salvador Mark G , Hulsey William R , Azzarello Joseph , Ellis Jeffrey , Kim Daniel , King-Lewis William , Smith Jessica Nicole , Rodriguez Barbara , Maves Ryan C , Lawler James V , Schully Kevin L 
Published: September 2021

PurposeIn 2012, US Marines and Sailors began annual deployments to Australia to participate in joint training exercises with the Australian Defence Force and other partners in the region. During their training, US service members are exposed to a variety of infectious disease threats not normally encountered by American citizens. This paper describes a cohort of US Marines and Sailors enrolled during five rotations to Australia between 2016 and 2020.ParticipantsStudy participation is strictly voluntary. Group informational sessions are held prior to deployment to describe the study structure and goals, as well as the infectious disease threats that participants may encounter while in Australia. All participants provided written informed consent. Consented participants complete a pre-deployment questionnaire to collect data including basic demographic information, military occupational specialty, travel history, family history, basic health status and personal habits such as alcohol consumption. Blood is collected for serum, plasma and peripheral blood mononuclear cells (PBMC) processing. Data and specimen collection is repeated up to three times: before, during and after deployment.Findings to dateFrom the five rotations that comprised the 2016–2020 Marine Rotational Force-Darwin, we enrolled 1289 volunteers. Enrolments during this period were overwhelmingly white male under the age of 24 years. Most of the enrollees were junior enlisted and non-commissioned officers, with a smaller number of staff non-commissioned officers and commissioned officers, and minimal warrant officers. Over half of the enrollees had occupational specialty designations for infantry.Future plansIn the future, we will screen samples for serological evidence of infection withBurkholderia pseudomallei,Coxiella burnetii, Ross River virus, SARS-CoV-2 and other operationally relevant pathogens endemic in Australia. Antigenic stimulation assays will be performed on PBMCs collected from seropositive individuals to characterise the immune response to these infections in this healthy American population.
Economic burden and loss of quality of life from dry eye disease in Canada
Authors: Chan Clara , Ziai Setareh , Myageri Varun , Burns James G , Prokopich C Lisa 
Published: September 2021

ObjectiveTo describe the direct and indirect cost estimates of dry eye disease (DED), stratified by disease severity, and the impact of DED on quality of life (QoL) in Canadian patients.Methods and analysisA prospective, multicentre, observational, cross-sectional study was conducted at six sites across Canada. Eligible patients completed a 20 min survey on demography, general health, disease severity, QoL and direct (resource utilisation and out-of-pocket expenses for the past 3–24 months) and indirect costs (absenteeism and presenteeism based on Work Productivity and Activity Impairment questionnaire responses). Subgroup analyses were performed according to DED severity and presence of Sjögren’s syndrome.ResultsResponses from 146 of 151 participants were included in the analysis. DED was rated as moderate or severe by 19.2% and 69.2% of patients, respectively. Total mean annual costs of DED were $C24 331 (Canadian dollars) per patient and increased with patient-reported disease severity. Mean (standard deviation [SD]) indirect costs for mild, moderate and severe disease were $C5961 ($C6275), $C16 525 ($C11 607), and $C25 485 ($C22,879), respectively. Mean (SD) direct costs were $C958 ($C1216), $C1303 ($C1574) and $C2766 ($C7161), respectively. QoL scores were lowest in patients with Sjögren’s syndrome (8.2% of cohort) and those with severe DED.ConclusionThis study provides important insights into the negative impact of DED in a Canadian setting. Severe DED was associated with higher direct and indirect costs and lower QoL compared with those with mild or moderate disease. Increased costs and poorer QoL were also evident for patients with DED plus Sjögren’s syndrome versus DED alone.
Hybrid type 1 effectiveness/implementation trial of the international Guide for Monitoring Child Development: protocol for a cluster-randomised controlled trial
Authors: Raut Abhishek , Mustafayev Revan , Srinivasan Roopa , Chary Anita , Ertem Ilgi , Grazioso Maria del Pilar , Gupta Subodh , Krishnamurthy Vibha , Lu Chunling , Maliye Chetna , Miller Ann C , Wagenaar Bradley H , Rohloff Peter 
Published: September 2021

IntroductionMore than 40% of children under 5 years of age in low-income and middle-income countries are at risk of not reaching their developmental potential. The international Guide for Monitoring Child Development (GMCD) early intervention package is a comprehensive programme to address developmental difficulties using an individualised intervention plan for young children and their families. We will conduct a hybrid type 1 effectiveness–implementation evaluation of the GMCD intervention in rural India and Guatemala.Methods and analysisUsing a cluster-randomised design, 624 children aged 0–24 months in 52 clusters (26 in India, 26 in Guatemala) will be assigned to usual care or the GMCD intervention plus usual care delivered by frontline workers for 12 months. After 12 months, the usual care arm will cross over to the intervention, which will continue for 12 additional months (24 total). The intervention will be delivered using a digital mobile device interface. Effectiveness will be assessed for developmental functioning (Bayley Scales of Infant Development, 3rd edition) and nurturing care (Home Observation for Measurement of the Environment Scale) outcomes. Implementation will be assessed using the Reach, Effectiveness, Adoption, Implementation, Maintenance framework. Explanatory qualitative analysis guided by the Consolidated Framework for Implementation Research will explore determinants between clusters with high versus low implementation effectiveness.Ethics and disseminationThe study has been approved by the Institutional Review Boards of Brigham and Women’s Hospital, Mahatma Gandhi Institute of Medical Sciences and Maya Health Alliance; and by the Indian Council of Medical Research/Health Ministry Screening Committee. Key study findings will be published in international open-access journals.Trial registration numberNCT04665297, CTRI/2020/12/029748.Protocol version1.0 (12 November 2020).
Impact of COVID-19 on opioid use in those awaiting hip and knee arthroplasty: a retrospective cohort study
Authors: Farrow Luke , Gardner William T , Tang Chee Chee , Low Rachel , Forget Patrice , Ashcroft George Patrick 
Published: September 2021

BackgroundCOVID-19 has had a detrimental impact on access to hip and knee arthroplasty surgery. We set out to examine whether this had a subsequent impact on preoperative opioid prescribing rates for those awaiting surgery.MethodsData regarding patient demographics and opioid utilisation were collected from the electronic health records of included patients at a large university teaching hospital. Patients on the outpatient waiting list for primary hip and knee arthroplasty as of September 2020 (COVID-19 group) were compared with historical controls (Controls) who had previously undergone surgery. A sample size calculation indicated 452 patients were required to detect a 15% difference in opioid prescription rates between groups.ResultsA total of 548 patients (58.2% female) were included, 260 in the COVID-19 group and 288 in the Controls. Baseline demographics were similar between the groups. For those with data available, the proportion of patients on any opioid at follow-up in the COVID-19 group was significantly higher: 55.0% (143/260) compared with 41.2% (112/272) in the Controls (p=0.002). This remained significant when adjusted for confounding (age, gender, Scottish Index of Multiple Deprivation, procedure and wait time). The proportion of patients on a strong opioid was similar (4.2% (11/260) vs 4.8% (13/272)) for COVID-19 and Controls, respectively. The median waiting time from referral to follow-up was significantly longer in the COVID-19 group compared with the Controls (455 days vs 365 days; p<0.0001).ConclusionThe work provides evidence of potential for an emerging opioid problem associated with the influence of COVID-19 on elective arthroplasty services. Viable alternatives to opioid analgesia for those with end-stage arthritis should be explored, and prolonged waiting times for surgery ought to be avoided in the recovery from COVID-19 to prevent more widespread opioid use.
Fifteen years of Canada’s Species at Risk Act: Evaluating research progress for aquatic species in the Great Lakes – St. Lawrence River basin1
Authors: Drake D. Andrew R. , Lamothe Karl A. , Thiessen Kristin E. , Morris Todd J. , Koops Marten A. , Pratt Thomas C. , Reid Scott M. , Jackson Donald A. , Mandrak Nicholas E. 
Published: September 2021

More than 15 years have passed since Canada’s Species at Risk Act was enacted. To evaluate scientific progress in support of the Act, we identified research accomplishments up to 2017 for imperilled aquatic species in the Great Lakes – St. Lawrence River basin based on recovery documents and an expert survey, spanning 1182 activities across 68 research topics for 45 fish and mussel species. Greatest progress was observed for population ecology (38% of activities with major progress) and habitat science (28%), with comparably less progress on threats (mechanisms and impacts; 19%) and recovery (threat mitigation and reintroduction; 21%). As a result of lagging progress, threat and reintroduction topics were prioritized for a Canadian Freshwater Species at Risk Research Network (SARNET; 2017–2020), which focused on addressing key knowledge gaps with novel applications. This special issue outlines the SARNET projects, which span novel field, laboratory, and analytical activities. Continued research investment into novel and existing approaches is necessary to advance scientific achievements for fishes and mussels in support of the Species at Risk Act in Canada.