bluuebunny/crossref_metadata_2025_split huggingface dataset:
Different land-use types equally impoverish but differentially preserve grassland species and functional traits of spider assemblages
Authors: Pinto Carolina M. , Pairo Pamela E. , Bellocq M. Isabel , Filloy Julieta 
Published: May 2021

AbstractLand-use change is one of the major drivers of biodiversity loss by introducing environmental modifications, which excludes native species unable to adapt to the novel conditions. Grasslands are among the most threatened biomes; understanding the influence of different land-use types on native species is crucial to achieving sustainable management policies. We hypothesized that land-use types that partially conserve the original vegetation cover would show higher taxonomic and functional diversity and similarity with native assemblages than land-use types that replace the original vegetation cover. We compared the taxonomic and functional alpha and beta diversity of spider assemblages between soybean crops, eucalypt plantations, and cattle fields with seminatural grasslands. Through null models, we assessed the standardized effect sizes to test differences in the strength of environmental filtering among land-use types. Environmental changes introduced by different land-use types resulted in assemblages differentiated in species and trait composition, taxonomically and functionally impoverished with respect to seminatural grasslands. All land-use types drove species replacement and trait loss and replacement of grassland spiders. Each land-use showed a characteristic species and trait composition. Most of the grassland traits were not lost but were under or over-represented according to the land-use type. Only in soybean crops the formation of spider communities would be mainly driven by environmental filtering. Changes in land-use decreased species diversity and modified the composition of spider species and functional traits leading to differentiated spider assemblages. As spider species and traits varied among land-uses, a mitigation measure against grasslands biodiversity loss could be the development of productive landscapes with a mosaic of land-use types, as each of them would provide microhabitats for species with different requirements. Because land-use types mainly led to the rearrangement of grassland functional trait values, most of spider functions might be conserved in mosaics of land-use types.
Survey of electron density changes in the daytime ionosphere over the Arecibo Observatory due to lightning and solar flares
Authors: da Silva Caitano L. , Salazar Sophia D. , Brum Christiano G. M. , Terra Pedrina 
Published: May 2021

AbstractOptical observations of transient luminous events and remote-sensing of the lower ionosphere with low-frequency radio waves have demonstrated that thunderstorms and lightning can have substantial impacts in the nighttime ionospheric D region. However, it remains a challenge to quantify such effects in the daytime lower ionosphere. The wealth of electron density data acquired over the years by the Arecibo Observatory incoherent scatter radar (ISR) with high vertical spatial resolution (300-m in the present study), combined with its tropical location in a region of high lightning activity, indicate a potentially transformative pathway to address this issue. Through a systematic survey, we show that daytime sudden electron density changes registered by Arecibo’s ISR during thunderstorm times are on average different than the ones happening during fair weather conditions (driven by other external factors). These changes typically correspond to electron density depletions in the D and E region. The survey also shows that these disturbances are different than the ones associated with solar flares, which tend to have longer duration and most often correspond to an increase in the local electron density content.
An open-source semi-automated robotics pipeline for embryo immunohistochemistry
Authors: Fuqua Timothy , Jordan Jeff , Halavatyi Aliaksandr , Tischer Christian , Richter Kerstin , Crocker Justin 
Published: May 2021

AbstractA significant challenge for developmental systems biology is balancing throughput with controlled conditions that minimize experimental artifacts. Large-scale developmental screens such as unbiased mutagenesis surveys have been limited in their applicability to embryonic systems, as the technologies for quantifying precise expression patterns in whole animals has not kept pace with other sequencing-based technologies. Here, we outline an open-source semi-automated pipeline to chemically fixate, stain, and 3D-image Drosophila embryos. Central to this pipeline is a liquid handling robot, Flyspresso, which automates the steps of classical embryo fixation and staining. We provide the schematics and an overview of the technology for an engineer or someone equivalently trained to reproduce and further improve upon Flyspresso, and highlight the Drosophila embryo fixation and colorimetric or antibody staining protocols. Additionally, we provide a detailed overview and stepwise protocol for our adaptive-feedback pipeline for automated embryo imaging on confocal microscopes. We demonstrate the efficiency of this pipeline compared to classical techniques, and how it can be repurposed or scaled to other protocols and biological systems. We hope our pipeline will serve as a platform for future research, allowing a broader community of users to build, execute, and share similar experiments.
Lung function decline is associated with serum uric acid in Korean health screening individuals
Authors: Ahn Kyung-Min , Lee Suh-Young , Lee So-Hee , Kim Sun-Sin , Park Heung-Woo 
Published: May 2021

AbstractWe performed a retrospective cohort study of 19,237 individuals who underwent at least three health screenings with follow-up periods of over 5 years to find a routinely checked serum marker that predicts lung function decline. Using linear regression models to analyze associations between the rate of decline in the forced expiratory volume in 1 s (FEV1) and the level of 10 serum markers (calcium, phosphorus, uric acid, total cholesterol, total protein, total bilirubin, alkaline phosphatase, aspartate aminotransferase, creatinine, and C-reactive protein) measured at two different times (at the first and third health screenings), we found that an increased uric acid level was significantly associated with an accelerated FEV1 decline (P = 0.0014 and P = 0.037, respectively) and reduced FEV1 predicted % (P = 0.0074 and P = 8.64 × 10–7, respectively) at both visits only in non-smoking individuals. In addition, we confirmed that accelerated forced vital capacity (FVC) and FEV1/FVC ratio declines were observed in non-smoking individuals with increased serum uric acid levels using linear mixed models. The serum uric acid level thus potentially predicts an acceleration in lung function decline in a non-smoking general population.
Airglow-imager based observation of possible influences of subtropical mesospheric gravity waves on F-region ionosphere over Jammu & Kashmir, India
Authors: Ramkumar T. K. , Malik Manzoor Ahmad , Ganaie Bilal Ahmad , Bhat Aashiq Hussain 
Published: May 2021

AbstractAs a joint research collaboration between the National Atmospheric Research Laboratory (NARL), and the University of Kashmir (KU), NARL installed an all-sky airglow CCD imager (with centre wavelengths of 630 nm, 557.7 nm [2 nm band widths] and 840 nm [150 nm wide band with blocking notch at 866 nm to avoid the contamination of molecular oxygen emissions]) in the University campus in Srinagar (75°E, 34°N, geographic), Jammu and Kashmir, India (western Himalayan region). To understand the upper atmospheric dynamics and ionospheric electrodynamics and their associated physical coupling mechanisms, the imager observes airglow emissions of OH molecules (~ 85 km height; 840 nm) and atomic oxygen occurring at the heights of ~ 97 km (557.7 nm) and ~ 250 km (630 nm). Airglow observations in Kashmir commenced in the night of August 11, 2017 and the present work reports on the characteristics of first-time observation of Medium Scale Travelling Ionospheric Disturbances (MSTIDs with horizontal wavelengths of ~ 100–300 km) over Kashmir region during 20:30—22:30 IST (Indian standard time) on August 15, 2017 (India independence day). Initially, the phase front of MSTIDs was aligned along the north-west and south-east direction and moved at ~ 57 m/s towards the south-west direction and finally the westward direction by aligning along the meridian before they disappeared. Along with SAMI-3 ionospheric model simulations, simultaneous multiwavelength airglow observations indicate that secondary gravity waves generated due to dissipation of upward propagating mesospheric gravity waves in the heights of ~ 85–95 km would have contributed to the generation of MSTIDs in the F region ionospheric plasma through electrodynamical coupling between the E and F region (Perkins instability) ionosphere.
Using past interglacial temperature maxima to explore transgressions in modern Maldivian coral and Amphistegina bleaching thresholds
Authors: Stainbank Stephanie , Kroon Dick , de Leau Erica S. , Spezzaferri Silvia 
Published: May 2021

AbstractTropical corals and Amphistegina, an example genus of symbiont-bearing larger benthic foraminifera, are presently living close to their thermal bleaching thresholds. As such, these essential reef-building organisms are vulnerable to the future prospect of more frequent sea surface temperature (SST) extremes. Exploring the earth’s paleo-climatic record, including interglacials warmer than present, may provide insights into future oceanographic conditions. We analyse foraminiferal shell geochemical compositions, from Recent surface sediments and Marine Isotope stage (MIS) 9e and MIS11c aged sediments, from the International Ocean Discovery Program Expedition 359 Site U1467 drilled in the Inner Sea of the Maldives. We illustrate through traditional (pooled) geochemical analysis (δ18O, Mg/Ca) that tropical temperatures were indeed marginally warmer during MIS9e and MIS11c in comparison to the modern ocean. Individual foraminiferal analysis (IFA) from the Recent (representing the last few hundred years) and MIS9e samples shows SSTs occasionally breached the coral bleaching threshold similarly to the modern-day. Significantly, the number of transgressions was four times higher during MIS11c, a recognised analogue for a warmer modern world. This new knowledge and novel IFA insight and application is invaluable given thermal stress is already obvious today with an increasing number of bleaching events over the last few decades.
Maternal control of visceral asymmetry evolution in Astyanax cavefish
Authors: Ma Li , Ng Mandy , Shi Janet , Gore Aniket V. , Castranova Daniel , Weinstein Brant M. , Jeffery William R. 
Published: May 2021

AbstractThe direction of visceral organ asymmetry is highly conserved during vertebrate evolution with heart development biased to the left and pancreas and liver development restricted to opposing sides of the midline. Here we show that reversals in visceral organ asymmetry have evolved inAstyanax mexicanus, a teleost species with interfertile surface-dwelling (surface fish) and cave-dwelling (cavefish) forms. Visceral organ asymmetry is conventional in surface fish but some cavefish have evolved reversals in heart, liver, and pancreas development. Corresponding changes in the normally left-sided expression of the Nodal-Pitx2/Lefty signaling system are also present in the cavefish lateral plate mesoderm (LPM). The Nodal antagonistslefty1(lft1) andlefty2(lft2), which confine Nodal signaling to the left LPM, are expressed in most surface fish, however,lft2,but notlft1,expression is absent during somitogenesis of most cavefish. Despite this difference, multiple lines of evidence suggested that evolutionary changes in L-R patterning are controlled upstream of Nodal-Pitx2/Lefty signaling. Accordingly, reciprocal hybridization of cavefish and surface fish showed that modifications of heart asymmetry are present in hybrids derived from cavefish mothers but not from surface fish mothers. The results indicate that changes in visceral asymmetry during cavefish evolution are influenced by maternal genetic effects.
Exploitation of blood non-Newtonian properties for ultrasonic measurement of hematocrit
Authors: Pialot B. , Gachelin J. , Provost J. , Couture O. 
Published: May 2021

AbstractNew processing techniques for manipulating blood and its components at a microfluidic scale are currently implemented. As for extracorporeal circulation, the in-line evaluation and monitoring of blood properties during these microfluidic techniques is a challenging task. Here, we show that the blood hematocrit can be measured non-invasively in a sub-millimeter medical tube using the non-Newtonian behavior of blood velocity profile. This hematocrit measurement is demonstrated on human blood with a simple Doppler ultrasound system. Results show a mean measurement error of 4.6 ± 1.3%Hct for hematocrit up to 52% and for 5 s-long ultrasonic signals. The simplicity and the measurement scale of the approach make it highly valuable for measuring hematocrit in new blood separation techniques. The approach may have an impact on in-vitro blood processing in general.
Mouse IgG3 binding to macrophage-like cells is prevented by deglycosylation of the antibody or by Accutase treatment of the cells
Authors: Karabasz Alicja , Bzowska Monika , Bereta Joanna , Czarnek Maria , Sochalska Maja , Klaus Tomasz 
Published: May 2021

AbstractThe binding of mouse IgG3 to Fcγ receptors (FcγR) and the existence of a mouse IgG3-specific receptor have been discussed for 40 years. Recently, integrin beta-1 (ITGB1) was proposed to be a part of an IgG3 receptor involved in the phagocytosis of IgG3-coated pathogens. We investigated the interaction of mouse IgG3 with macrophage-like J774A.1 and P388D1 cells. The existence of an IgG3-specific receptor was verified using flow cytometry and a rosetting assay, in which erythrocytes clustered around the macrophage-like cells coated with an erythrocyte-specific IgG3. Our findings confirmed that receptors binding antigen-free IgG3 are present on J774A.1 and P388D1 cells. We demonstrated for the first time that the removal of N-glycans from IgG3 completely abolished its binding to the cells. Moreover, we discovered that the cells treated with Accutase did not bind IgG3, indicating that IgG3-specific receptors are substrates of this enzyme. The results of antibody-mediated blocking of putative IgG3 receptors suggested that apart from previously proposed ITGB1, FcγRII, FcγRIII, also additional, still unknown, receptor is involved in IgG3 binding. These findings indicate that there is a complex network of glycan-dependent interactions between mouse IgG3 and the surface of effector immune cells.
Zonally asymmetric phytoplankton response to the Southern annular mode in the marginal sea of the Southern ocean
Authors: Noh Kyung Min , Lim Hyung-Gyu , Kug Jong-Seong 
Published: May 2021

AbstractAntarctic marine biological variability modulates climate systems via the biological pump. However, the knowledge of biological response in the Southern Ocean to climate variability still has been lack of understanding owing to limited ocean color data in the high latitude region. We investigated the surface chlorophyll concentration responses to the Southern annular mode (SAM) in the marginal sea of the Southern ocean using satellite observation and reanalysis data focusing on the austral summer. The positive phase of SAM is associated with enhanced and poleward-shifted westerly winds, leading to physical and biogeochemical responses over the Southern ocean. Our result indicates that chlorophyll has strong zonally asymmetric responses to SAM owing to different limiting factors of phytoplankton growth per region. For the positive SAM phase, chlorophyll tends to increase in the western Amundsen–Ross Sea but decreases in the D’Urville Sea. It is suggested that the distinct limiting factors are associated with the seasonal variability of sea ice and upwelling per region.
An assessment of the mathematical model for estimating of entropy optimized viscous fluid flow towards a rotating cone surface
Authors: Li Yong-Min , Khan M. Ijaz , Khan Sohail A. , Khan Sami Ullah , Shah Zahir , Kumam Poom 
Published: May 2021

AbstractEntropy optimization in convective viscous fluids flow due to a rotating cone is explored. Heat expression with heat source/sink and dissipation is considered. Irreversibility with binary chemical reaction is also deliberated. Nonlinear system is reduced to ODEs by suitable variables. Newton built in shooting procedure is adopted for numerical solution. Salient features velocity filed, Bejan number, entropy rate, concentration and temperature are deliberated. Numerical outcomes for velocity gradient and mass and heat transfer rates are displayed through tables. Assessments between the current and previous published outcomes are in an excellent agreement. It is noted that velocity and temperature show contrasting behavior for larger variable viscosity parameter. Entropy rate and Bejan number have reverse effect against viscosity variable. For rising values of thermal conductivity variable both Bejan number and entropy optimization have similar effect.
Hyperthermia by near infrared radiation induced immune cells activation and infiltration in breast tumor
Authors: Wan Mohd Zawawi Wan Fatin Amira , Hibma M. H. , Salim M. I. , Jemon K. 
Published: May 2021

AbstractBreast cancer is the most common cancer that causes death in women. Conventional therapies, including surgery and chemotherapy, have different therapeutic effects and are commonly associated with risks and side effects. Near infrared radiation is a technique with few side effects that is used for local hyperthermia, typically as an adjuvant to other cancer therapies. The understanding of the use of near NIR as a monotherapy, and its effects on the immune cells activation and infiltration, are limited. In this study, we investigate the effects of HT treatment using NIR on tumor regression and on the immune cells and molecules in breast tumors. Results from this study demonstrated that local HT by NIR at 43 °C reduced tumor progression and significantly increased the median survival of tumor-bearing mice. Immunohistochemical analysis revealed a significant reduction in cells proliferation in treated tumor, which was accompanied by an abundance of heat shock protein 70 (Hsp70). Increased numbers of activated dendritic cells were observed in the draining lymph nodes of the mice, along with infiltration of T cells, NK cells and B cells into the tumor. In contrast, tumor-infiltrated regulatory T cells were largely diminished from the tumor. In addition, higher IFN-γ and IL-2 secretion was observed in tumor of treated mice. Overall, results from this present study extends the understanding of using local HT by NIR to stimulate a favourable immune response against breast cancer.
Quantitative determination of spin–orbit-induced magnetic field in GaMnAs by field-scan planar Hall measurements
Authors: Park Seongjoon , Lee Shinwoo , Lee Kyung Jae , Park SeongJin , Chongthanaphisut Phunvira , Jang Jiyeong , Lee Sanghoon , Liu Xinyu , Dobrowolska M. , Furdyna Jacek K. 
Published: May 2021

AbstractSpin–orbit-induced (SOI) effective magnetic field in GaMnAs film with in-plane magnetic anisotropy has been investigated by planar Hall effect measurements. The presence of SOI field was identified by a shift between planar Hall resistance (PHR) hystereses observed with positive and negative currents. The difference of switching fields occurring between the two current polarities, which is determined by the strength of the SOI field, is shown to depend on the external field direction. In this paper we have developed a method for obtaining the magnitude of the SOI fields based on magnetic free energy that includes the effects of magnetic anisotropy and the SOI field. Using this approach, the SOI field for a given current density was accurately obtained by fitting to the observed dependence of the switching fields on the applied field directions. Values of the SOI field obtained with field scan PHR measurements give results that are consistent with those obtained by analyzing the angular dependence of PHR, indicating the reliability of the field scan PHR method for quantifying the SOI-field in GaMnAs films. The magnitude of the SOI field systematically increases with increasing current density, demonstrating the usefulness of SOI fields for manipulation of magnetization by current in GaMnAs films.
SGLT-2 inhibitors associated euglycemic and hyperglycemic DKA in a multicentric cohort
Authors: Ata Fateen , Yousaf Zohaib , Khan Adeel Ahmad , Razok Almurtada , Akram Jaweria , Ali Elrazi Awadelkarim Hamid , Abdalhadi Ahmed , Ibrahim Diaeldin Abdelgalil , Al Mohanadi Dabia Hamad S. H. , Danjuma Mohammed I. 
Published: May 2021

AbstractEuglycemic diabetic ketoacidosis (EuDKA) secondary to Sodium-glucose co-transporter-2 inhibitors (SGLT2i) in type 2 diabetes mellitus (T2D) is a rare but increasingly reported phenomenon. Not much is known about the burden of EuDKA in patients on SGLT2i or the associated factors. This retrospective cohort study tries to delineate the differences in factors associated with the development of EuDKA as compared to hyperglycemic DKA. We conducted a multicentre, retrospective study across three tertiary care centers under Weill Cornell affiliated-Hamad Medical Corporation, Qatar. The cohort comprised of T2D patients on SGLT2i who developed DKA between January 2015 to December 2020. The differences between the subjects who developed EuDKA or hyperglycaemic DKA (hDKA) were analyzed. A total of 9940 T2D patients were on SGLT2i during 2015–2020, out of which 43 developed DKA (0.43%). 25 developed EuKDA, whereas 18 had hDKA. The point prevalence of EuDKA in our cohort was 58.1%. EuDKA was most common in patients using canagliflozin, followed by empagliflozin and Dapagliflozin (100%, 77%, and 48.3%, respectively). Overall, infection (32.6%) was the most common trigger for DKA, followed by insulin non-compliance (13.7%). Infection was the only risk factor with a significant point estimate between the two groups, being more common in hDKA patients (p-value 0.006, RR 2.53, 95% CI 1.07–5.98). Canagliflozin had the strongest association with the development of EuDKA and was associated with the highest medical intensive care unit (MICU) admission rates (66.6%). In T2D patients on SGLT2i, infection is probably associated with an increased risk of developing EuDKA. The differential role of individual SGLT2i analogs is less clear and will need exploration by more extensive prospective studies.