bluuebunny/crossref_metadata_2025_split huggingface dataset:
Inhibition of the CXCL9-CXCR3 axis suppresses the progression of experimental apical periodontitis by blocking macrophage migration and activation
Authors: Hasegawa Tatsuya , Venkata Suresh V. , Yahata Yoshio , Nakano Masato , Suzuki Shigeto , Suzuki Shigeki , Yamada Satoru , Kitaura Hideki , Mizoguchi Itaru , Noiri Yuichiro , Handa Keisuke , Saito Masahiro 
Published: January 2021

AbstractApical periodontitis (AP) is an acute or chronic inflammatory disease caused by complex interactions between infected root canal and host immune system. It results in the induction of inflammatory mediators such as chemokines and cytokines leading to periapical tissue destruction. To understand the molecular pathogenesis of AP, we have investigated inflammatory-related genes that regulate AP development. We found here that macrophage-derived CXCL9, which acts through CXCR3, is recruited by progressed AP. The inhibition of CXCL9 by a CXCR3 antagonist reduced the lesion size in a mouse AP model with decreasing IL-1β, IL-6 and TNFα expression. The treatment of peritoneal macrophages with CXCL9 and LPS induced the transmigration and upregulation of osteoclastogenic cytokines such as IL-1β, IL-6 and matrix metalloprotease 2, a marker of activated macrophages. This suggests that the CXCL9-CXCR3 axis plays a crucial role in the development of AP, mediated by the migration and activation of macrophages for periapical tissue destruction. Our data thus show that CXCL9 regulates the functions of macrophages which contribute to AP pathogenesis, and that blocking CXCL9 suppresses AP progression. Knowledge of the principal factors involved in the progression of AP, and the identification of related inflammatory markers, may help to establish new therapeutic strategies.
Population genetics and evolutionary history of the endangered Eld’s deer (Rucervus eldii) with implications for planning species recovery
Authors: Ghazi Mirza Ghazanfarullah , Sharma Surya Prasad , Tuboi Chongpi , Angom Sangeeta , Gurumayum Tennison , Nigam Parag , Hussain Syed Ainul 
Published: January 2021

AbstractEld's deer (Rucervus eldii) with three recognised subspecies (R. e. eldii, R. e. thamin,andR. e. siamensis) represents one of the most threatened cervids found in Southeast Asia. The species has experienced considerable range contractions and local extinctions owing to habitat loss and fragmentation, hunting, and illegal trade across its distribution range over the last century. Understanding the patterns of genetic variation is crucial for planning effective conservation strategies. This study investigated the phylogeography, divergence events and systematics of Eld's deer subspecies using the largest mtDNA dataset compiled to date. We also analysed the genetic structure and demographic history ofR. e. eldiiusing 19 microsatellite markers. Our results showed thatR. e. siamensisexhibits two divergent mtDNA lineages (mainland and Hainan Island), which diverged around 0.2 Mya (95% HPD 0.1–0.2), possibly driven by the fluctuating sea levels of the Early Holocene period. The divergence betweenR. e. eldiiandR. e. siamensisoccurred around 0.4 Mya (95% HPD 0.3–0.5), potentially associated with the adaptations to warm and humid climate with open grassland vegetation that predominated the region. Furthermore,R. e. eldiiexhibits low levels of genetic diversity and small contemporary effective population size (median = 7, 4.7–10.8 at 95% CI) with widespread historical genetic bottlenecks which accentuates its vulnerability to inbreeding and extinction. Based on the observed significant evolutionary and systematic distance between Eld’s deer and other species of the genusRucervus,we propose to classify Eld's deer (Cervus eldii) in the genusCervus, which is in congruent with previous phylogenetic studies. This study provides important conservation implications required to direct the ongoing population recovery programs and planning future conservation strategies.
Vertically integrated diffractive gratings on photonic crystal surface emitting lasers
Authors: Chen Lih-Ren , Hong Kuo-Bin , Chen Hsiu-Ling , Huang Kuan-Chih , Lu Tien-Chang 
Published: January 2021

AbstractWe designed and fabricated a photonic crystal surface emitting laser (PCSEL) with vertically integrated diffractive optical elements on their top to study the mechanism of static beam steering on a single chip. The deflected output beam by the self-formed periodic ITO cladding layer of the PCSEL can be further steered by changing the grating period and azimuthal angle of the diffractive gratings relative to the photonic crystal. Through the analysis of photonic band structure and lasing characteristics, the periodic ITO structure is coupled to the photonic crystal band, whereas the integrated grating serves the diffractive function only. The findings pave the way for the design of PCSELs enabling single or multiple output beam with varying direction capability. This type of laser is regarded as an ideal light source for various applications, such as light detection and ranging and three-dimensional sensing systems.
Oxycodone self-administration activates the mitogen-activated protein kinase/ mitogen- and stress-activated protein kinase (MAPK-MSK) signaling pathway in the rat dorsal striatum
Authors: Blackwood Christopher A. , McCoy Michael T. , Ladenheim Bruce , Cadet Jean Lud 
Published: January 2021

AbstractTo identify signaling pathways activated by oxycodone self-administration (SA), Sprague–Dawley rats self-administered oxycodone for 20 days using short—(ShA, 3 h) and long-access (LgA, 9 h) paradigms. Animals were euthanized 2 h after SA cessation and dorsal striata were used in post-mortem molecular analyses. LgA rats escalated their oxycodone intake and separated into lower (LgA-L) or higher (LgA-H) oxycodone takers. LgA-H rats showed increased striatal protein phosphorylation of ERK1/2 and MSK1/2. Histone H3, phosphorylated at serine 10 and acetylated at lysine 14 (H3S10pK14Ac), a MSK1/2 target, showed increased abundance only in LgA-H rats. RT-qPCR analyses revealed increased AMPA receptor subunits, GluA2 and GluA3 mRNAs, in the LgA-H rats. GluA3, but not GluA2, mRNA expression correlated positively with changes in pMSK1/2 and H3S10pK14Ac. These findings suggest that escalated oxycodone SA results in MSK1/2-dependent histone phosphorylation and increases in striatal gene expression. These observations offer potential avenues for interventions against oxycodone addiction.
Virome-wide serological profiling reveals association of herpesviruses with obesity
Authors: Hasan Mohammad Rubayet , Rahman Mahbuba , Khan Taushif , Saeed Amira , Sundararaju Sathyavathi , Flores Annaliza , Hawken Phillip , Rawat Arun , Elkum Naser , Hussain Khalid , Tan Rusung , Tang Patrick , Marr Nico 
Published: January 2021

AbstractThe relationship between viral infection and obesity has been known for several decades but epidemiological data is limited to only a few viral pathogens. The association between obesity and a wide range of viruses was assessed using VirScan, a pan-viral serological profiling tool. Serum specimens from 457 Qatari adults (lean = 184; obese = 273) and 231 Qatari children (lean = 111; obese = 120) were analyzed by VirScan. Associations with obesity were determined by odds ratio (OR) and Fisher’s test (p values), and by multivariate regression analysis to adjust for age and gender. Although there was no association of viral infections with obesity in the pediatric population, a nominal association of obesity with seropositivity to members of the Herpesviridae family is observed for the adult population (OR = 1.5–3.3; p < 0.05). After adjusting p values for multiple comparisons (Bonferroni correction) the odds of being obese is significantly higher in herpes simplex virus 1 (HSV-1) seropositive Qatari adults (OR = 3.3; 95% CI 2.15–4.99; p = 2.787E − 08). By VirScan, the sero-prevalence of HSV1 is 81.3% and 57.1% among Qatari obese and lean adult populations, respectively. Higher prevalence of antibodies against several peptide epitopes of HSV-1/2 is positively associated with obesity (OR = 2.35–3.82; p ≤ 3.981E − 05). By multivariate regression analysis, HSV-1 was independently associated with obesity irrespective of age and gender. Our results suggest that obesity among Qataris may be associated with a higher prevalence of herpesvirus infections, in particular HSV-1. Furthermore, the high prevalence of antibodies against peptide antigens specific to HSV-1 and -2 in the obese population suggests that these viral peptides may play a role in adipogenesis. Further studies with these candidate peptides in cell culture or animal models may confirm their adipogenic roles.
Transcriptional coupling and repair of 8-OxoG activate a RecA-dependent checkpoint that controls the onset of sporulation in Bacillus subtilis
Authors: Suárez Valeria P. , Martínez Lissett E. , Leyva-Sánchez Hilda C. , Valenzuela-García Luz I. , Lara-Martínez Reyna , Jiménez-García Luis F. , Ramírez-Ramírez Norma , Obregon-Herrera Armando , Cuéllar-Cruz Mayra , Robleto Eduardo A. , Pedraza-Reyes Mario 
Published: January 2021

AbstractDuring sporulation Bacillus subtilis Mfd couples transcription to nucleotide excision repair (NER) to eliminate DNA distorting lesions. Here, we report a significant decline in sporulation following Mfd disruption, which was manifested in the absence of external DNA-damage suggesting that spontaneous lesions activate the function of Mfd for an efficient sporogenesis. Accordingly, a dramatic decline in sporulation efficiency took place in a B. subtilis strain lacking Mfd and the repair/prevention guanine oxidized (GO) system (hereafter, the ∆GO system), composed by YtkD, MutM and MutY. Furthermore, the simultaneous absence of Mfd and the GO system, (i) sensitized sporulating cells to H2O2, and (ii) elicited spontaneous and oxygen radical-induced rifampin-resistance (Rifr) mutagenesis. Epifluorescence (EF), confocal and transmission electron (TEM) microscopy analyses, showed a decreased ability of ∆GO ∆mfd strain to sporulate and to develop the typical morphologies of sporulating cells. Remarkably, disruption of sda, sirA and disA partially, restored the sporulation efficiency of the strain deficient for Mfd and the ∆GO system; complete restoration occurred in the RecA− background. Overall, our results unveil a novel Mfd mechanism of transcription-coupled-repair (TCR) elicited by 8-OxoG which converges in the activation of a RecA-dependent checkpoint event that control the onset of sporulation in B. subtilis.
Feature extraction and classification of surface discharges on an ice-covered insulator string during AC flashover using gray-level co-occurrence matrix
Authors: Liu Yong , Li Qiran , Du Boxue , Farzaneh Masoud 
Published: January 2021

AbstractThis study focuses on the feature extraction and classification of surface discharges of ice-covered insulator strings during process of alternating current flashover. The test specimen was the five units suspension ceramic insulators, which was artificially accreted with wet-grown ice in the cold-climate room of CIGELE. Based on the IEEE Standard 1783/2009, flashover experiments were conducted on iced insulators to measure the minimum flashover voltage (VMF) and record the propagating process of surface discharges to flashover by using a high-speed video camera. The gray-level co-occurrence matrix (GLCM) method has been used to extract four parameters of arc discharge images features that characterize different stages of flashover process. The parameters are angular second moment (ASM), contrast (CON), inverse difference moment (IDM) and entropy (ENT). These statistical parameters of GLCM can be extracted to reveal the underlying properties of ice flashover on the insulator surface from the quantitative perspective. The different values of these indicators are representative of the different stages in the process of arc discharge. Once the value of quantitative indicators (ASM, CON, IDM, ENT) of surface discharges exceeds the threshold value, the higher flashover risk of iced insulators will appear. Hence, the proposed methods are helpful to understand and monitor surface discharge on iced outdoor insulator strings for preventing flashover accidents.
The evaluation of Hashimoto's thyroiditis with event-related potentials and magnetic resonance spectroscopy and its relation to cognitive function
Authors: Waliszewska-Prosół Marta , Bladowska Joanna , Budrewicz Sławomir , Sąsiadek Marek , Dziadkowiak Edyta , Ejma Maria 
Published: January 2021

AbstractThyroid dysfunction is very often accompanied by cognitive and affective disorders. The frequency of these disorders in patients with compensated Hashimoto’s thyroiditis (HT) is unknown. The aim of the present study was to evaluate brain dysfunction in euthyroid HT patients by means of event-related potentials (ERP) and magnetic resonance spectroscopy (MRS) and to correlate it with cognitive function. 68 patients with HT (59 female, 9 male) and 45 healthy controls were included in the study. All the patients underwent ERP including an analysis of N200 and P300 response parameters. MRS voxels were located in the posterior cingulate gyrus (PCG) and the left parietal white matter (PWM). The NAA/Cr, mI/Cr, and Cho/Cr ratios were analysed. The ERP parameters, MRS metabolite ratios and hormonal concentrations (TSH, fT3, fT4) as well as TGAb and TPOAb titer were also correlated. There was a significant prolongation of the latencies of N200 and P300 potentials and a significant decrease of P300 amplitude in HT patients than in the control group. There was a significant positive correlation between the mI/Cr ratio in the PCG area and P300 latencies. NAA/Cr ratio in the PCG region showed significant negative correlations with all N200 latencies. The results may suggest brain dysfunction in neurologically asymptomatic HT patients. ERPs undergo significant changes in patients with HT and may, in combination with MRS, constitute an important element in the recognition and monitoring of cognitive functions in this group of patients.
Notch signaling-modified mesenchymal stem cells improve tissue perfusion by induction of arteriogenesis in a rat hindlimb ischemia model
Authors: Maeda Shusaku , Miyagawa Shigeru , Kawamura Takuji , Shibuya Takashi , Watanabe Kenichi , Nakagawa Takaya , Harada Akima , Chida Dai , Sawa Yoshiki 
Published: January 2021

AbstractNotch signaling-modified human mesenchymal stem cell, SB623 cell, is a promising cell therapy product for ischemic stroke. With the aim to expand indications for their use for critical limb-threatening ischemia (CLTI), we hypothesized that SB623 cells improved tissue perfusion by inducing angiogenesis or arteriogenesis in a hindlimb ischemia model rat. In Sprague–Dawley rats, hindlimb ischemia was generated by femoral artery removal, then seven days after ischemic induction 1 × 105 SB623 cells or PBS was injected into the ischemic adductor muscle. As compared with the PBS group, tissue perfusion was significantly increased in the SB623 group. While capillary density did not vary between the groups, αSMA- and vWF-positive arterioles with a diameter  > 15 μm were significantly increased in the SB623 group. Whole transcriptome analysis of endothelial cells co-cultured with SB623 cells showed upregulation of the Notch signaling pathway as well as several other pathways potentially leading to arteriogenesis. Furthermore, rat muscle treated with SB623 cells showed a trend for higher ephrin-B2 and significantly higher EphB4 expression, which are known as arteriogenic markers. In the hindlimb ischemia model, SB623 cells improved tissue perfusion by inducing arteriogenesis, suggesting a promising cell source for treatment of CLTI.
Identification and analysis of circulating long non-coding RNAs with high significance in diabetic cardiomyopathy
Authors: Pant Tarun , Dhanasekaran Anuradha , Zhao Ming , Thorp Edward B. , Forbess Joseph M. , Bosnjak Zeljko J. , Benjamin Ivor J. , Ge Zhi-Dong 
Published: January 2021

AbstractDiabetic cardiomyopathy (DCM) lacks diagnostic biomarkers. Circulating long non-coding RNAs (lncRNAs) can serve as valuable diagnostic biomarkers in cardiovascular disease. To seek potential lncRNAs as a diagnostic biomarker for DCM, we investigated the genome-wide expression profiling of circulating lncRNAs and mRNAs in type 2 diabetic db/db mice with and without DCM and performed bioinformatic analyses of the deregulated lncRNA-mRNA co-expression network. Db/db mice had obesity and hyperglycemia with normal cardiac function at 6 weeks of age (diabetes without DCM) but with an impaired cardiac function at 20 weeks of age (DCM) on an isolated Langendorff apparatus. Compared with the age-matched controls, 152 circulating lncRNAs, 127 mRNAs and 3355 lncRNAs, 2580 mRNAs were deregulated in db/db mice without and with DCM, respectively. The lncRNA-mRNA co-expression network analysis showed that five deregulated lncRNAs, XLOC015617, AK035192, Gm10435, TCR-α chain, and MouselincRNA0135, have the maximum connections with differentially expressed mRNAs. Bioinformatic analysis revealed that these five lncRNAs were highly associated with the development and motion of myofilaments, regulation of inflammatory and immune responses, and apoptosis. This finding was validated by the ultrastructural examination of myocardial samples from the db/db mice with DCM using electron microscopy and changes in the expression of myocardial tumor necrosis factor-α and phosphorylated p38 mitogen-activated protein kinase in db/db mice with DCM. These results indicate that XLOC015617, AK035192, Gm10435, TCR-α chain, and MouselincRNA0135 are crucial circulating lncRNAs in the pathogenesis of DCM. These five circulating lncRNAs may have high potential as a diagnostic biomarker for DCM.
New particle formation from agricultural recycling of organic waste products
Authors: Ciuraru R. , Kammer J. , Decuq C. , Vojkovic M. , Haider K. , Carpentier Y. , Lafouge F. , Berger C. , Bourdat-Deschamps M. , Ortega I. K. , Levavasseur F. , Houot S. , Loubet B. , Petitprez D. , Focsa C. 
Published: January 2021

AbstractSecondary organic aerosols (SOA) are one of the main sources of uncertainty in the current understanding of the Earth’s climate. Agriculture contributes to primary aerosol emissions, but there is no estimate of SOA formation from gaseous precursors. Organic waste products such as sewage sludge are applied to cropland as fertilizers. In this work, we show that sewage sludge is an unaccounted source of nucleation precursors, such as skatole (C9H9N). Skatole emission and nucleation rates up to 1.1 × 106 cm−3 s−1 owing to ozone reactivity were measured in the laboratory. Our results show that SO2 plays a key role in the oxidation of skatole and leads to intensive new particle formation. The products of ozone reactions with skatole and the possible ozonolysis reaction mechanism are discussed. This nucleation mechanism might aid our understanding of the organic waste agricultural recycling contribution to the aerosol balance in the atmosphere. Based on the measured particle emission flux, the surface area of sewage sludge spread in France and the time before sewage sludge incorporation into the soil, a rough estimate of the annual quantity of particles generated by this agricultural activity is in the range of one ton, which represents ~0.03% of the total PM1.0 emissions from the agricultural and forestry sectors in France. As spreading occurs over only a few days (mid-summer), these emissions may locally be of great concern for local and regional air quality during this period of the year.
Calcium-free double-layered cuprate superconductors with critical temperature above 100 K
Authors: Ninomiya Hiroki , Kawashima Kenji , Iyo Akira , Fujihisa Hiroshi , Ishida Shigeyuki , Ogino Hiraku , Yoshida Yoshiyuki , Gotoh Yoshito , Eisaki Hiroshi 
Published: January 2021

AbstractCalcium is a vital constituent in multilayered cuprate superconductors with critical temperatures (Tc) above 100 K, because it plays a key role in separating CuO2 planes. Here, we demonstrate the synthesis of calcium-free double-layered cuprates: Sr2SrCu2O4(X,O)2(X = F, Cl, and Br) and M(Sr,Ba)2SrCu2Oy(M = Hg/Re, Tl, and B/C), where strontium exists between the CuO2 planes. Oxyfluoride and mercury-based materials show a Tc of 107 K and 110 K, respectively, which are high compared to existing calcium-free cuprates. These findings indicate Tc greater than 100 K can be realized by replacing both barium and calcium, which have been indispensable in conventional multilayered cuprates, with strontium. Furthermore, the non-toxicity of Sr2SrCu2O4F2 and (B,C)Sr2SrCu2Oy simplifies the synthesis process and ensures their safety in potential applications. We also perform a comparison of the characteristic structural parameters between the calcium-free and calcium-containing cuprates considering the number of CuO2 planes.
Generalized Learning of Dysarthric Speech Between Male and Female Talkers
Authors: Hirsch Micah E. , Lansford Kaitlin L. , Barrett Tyson S. , Borrie Stephanie A. 
Published: January 2021

Purpose
Perceptual training is a listener-targeted means for improving intelligibility of dysarthric speech. Recent work has shown that training with one talker generalizes to a novel talker of the same sex and that the magnitude of benefit is maximized when the talkers are perceptually similar. The current study expands previous findings by investigating whether perceptual training effects generalize between talkers of different sex.

Method
Forty new listeners were recruited for this study and completed a pretest, familiarization, and posttest perceptual training paradigm. Historical data collected using the same three-phase protocol were included in the data analysis. All listeners were exposed to the same talker with dysarthria during the pretest and posttest phases. For the familiarization phase, listeners were exposed to one of four talkers with dysarthria, differing in sex and level of perceptual similarity to the test talker or a control talker. During the testing phases, listener transcribed phrases produced by the test talker with dysarthria. Listener transcriptions were then used to calculate a percent words correct intelligibility score.

Results
Multiple linear regression analysis revealed that intelligibility at posttest was not predicted by sex of the training talker. Consistent with earlier work, the magnitude of intelligibility gain was greater when the familiarization and test talkers were perceptually similar. Additional analyses revealed greater between-listeners variability in the dissimilar conditions as compared to the similar conditions.

Conclusions
Learning as a result of perceptual training with one talker with dysarthria generalized to another talker regardless of sex. In addition, listeners trained with perceptually similar talkers had greater and more consistent intelligibility improvement. Together, these results add to previous evidence demonstrating that learning generalizes to novel talkers with dysarthria and that perceptual training is suitable for many listeners.