bluuebunny/crossref_metadata_2025_split huggingface dataset:
Wood-inhabiting fungal responses to forest naturalness vary among morpho-groups
Authors: Jenna Purhonen , Nerea Abrego , Atte Komonen , Seppo Huhtinen , Heikki Kotiranta , Thomas Læssøe , Panu Halme 
Published: July 2021

AbstractThe general negative impact of forestry on wood-inhabiting fungal diversity is well recognized, yet the effect of forest naturalness is poorly disentangled among different fungal groups inhabiting dead wood of different tree species. We studied the relationship between forest naturalness, log characteristics and diversity of different fungal morpho-groups inhabiting large decaying logs of similar quality in spruce dominated boreal forests. We sampled all non-lichenized fruitbodies from birch, spruce, pine and aspen in 12 semi-natural forest sites of varying level of naturalness. The overall fungal community composition was mostly determined by host tree species. However, when assessing the relevance of the environmental variables separately for each tree species, the most important variable varied, naturalness being the most important explanatory variable for fungi inhabiting pine and aspen. More strikingly, the overall species richness increased as the forest naturalness increased, both at the site and log levels. At the site scale, the pattern was mostly driven by the discoid and pyrenoid morpho-groups inhabiting pine, whereas at the log scale, it was driven by pileate and resupinate morpho-groups inhabiting spruce. Although our study demonstrates that formerly managed protected forests serve as effective conservation areas for most wood-inhabiting fungal groups, it also shows that conservation planning and management should account for group- or host tree -specific responses.
Engineered mucoperiosteal scaffold for cleft palate regeneration towards the non-immunogenic transplantation
Authors: Rizzo M. I. , Tomao L. , Tedesco S. , Cajozzo M. , Esposito M. , De Stefanis C. , Ferranti A. M. , Mezzogori D. , Palmieri A. , Pozzato G. , Algeri M. , Locatelli F. , Leone L. , Zama M. 
Published: July 2021

AbstractCleft lip and palate (CL/P) is the most prevalent craniofacial birth defect in humans. None of the surgical procedures currently used for CL/P repair lead to definitive correction of hard palate bone interruption. Advances in tissue engineering and regenerative medicine aim to develop new strategies to restore palatal bone interruption by using tissue or organ-decellularized bioscaffolds seeded with host cells. Aim of this study was to set up a new natural scaffold deriving from a decellularized porcine mucoperiosteum, engineered by an innovative micro-perforation procedure based on Quantum Molecular Resonance (QMR) and then subjected to in vitro recellularization with human bone marrow-derived mesenchymal stem cells (hBM-MSCs). Our results demonstrated the efficiency of decellularization treatment gaining a natural, non-immunogenic scaffold with preserved collagen microenvironment that displays a favorable support to hMSC engraftment, spreading and differentiation. Ultrastructural analysis showed that the micro-perforation procedure preserved the collagen mesh, increasing the osteoinductive potential for mesenchymal precursor cells. In conclusion, we developed a novel tissue engineering protocol to obtain a non-immunogenic mucoperiosteal scaffold suitable for allogenic transplantation and CL/P repair. The innovative micro-perforation procedure improving hMSC osteogenic differentiation potentially impacts for enhanced palatal bone regeneration leading to future clinical applications in humans.
Anisotropic distortion in the perceived orientation of stimuli on the arm
Authors: Kuroki Scinob 
Published: July 2021

AbstractMechanoreceptors on the skin are heterogeneously distributed, and the sampling of neural signals in the brain can vary depending on the part of the body. Therefore, it can be challenging for the brain to consistently represent stimuli applied to different body sites. Here, we report an example of a regional perceptual distortion of the tactile space. We used a piezoelectric braille display to examine shape perception on the volar surface of the arm and to compare it to that on the palm. We found that the orientation of perceived stimuli on the arm was distorted in certain areas. In particular, an inwardly-inclined line shape was perceived as being more inwardly-inclined than it actually was. On the other hand, an outwardly-inclined line was perceived accurately. When the same stimuli were applied to the palm, this anisotropic bias was not observed. We also found that changing the posture of the arm changed the angle at which this anisotropic distortion occurred, suggesting the influence of the skin frame of reference on this illusion. This study showed a clear example of how the representation of even simple stimuli is complexly distinct when the stimuli are applied to different body sites.
Comprehensive exposure assessments from the viewpoint of health in a unique high natural background radiation area, Mamuju, Indonesia
Authors: Nugraha Eka Djatnika , Hosoda Masahiro , Kusdiana  , Untara  , Mellawati June , Nurokhim  , Tamakuma Yuki , Ikram Abarrul , Syaifudin Mukh , Yamada Ryohei , Akata Naofumi , Sasaki Michiya , Furukawa Masahide , Yoshinaga Shinji , Yamaguchi Masaru , Miura Tomisato , Kashiwakura Ikuo , Tokonami Shinji 
Published: July 2021

AbstractMamuju is one of the regions in Indonesia which retains natural conditions but has relatively high exposure to natural radiation. The goals of the present study were to characterize exposure of the entire Mamuju region as a high natural background radiation area (HNBRA) and to assess the existing exposure as a means for radiation protection of the public and the environment. A cross-sectional study method was used with cluster sampling areas by measuring all parameters that contribute to external and internal radiation exposures. It was determined that Mamuju was a unique HNBRA with the annual effective dose between 17 and 115 mSv, with an average of 32 mSv. The lifetime cumulative dose calculation suggested that Mamuju residents could receive as much as 2.2 Sv on average which is much higher than the average dose of atomic bomb survivors for which risks of cancer and non-cancer diseases are demonstrated. The study results are new scientific data allowing better understanding of health effects related to chronic low-dose-rate radiation exposure and they can be used as the main input in a future epidemiology study.
Design and fabrication of recombinant reflectin-based multilayer reflectors: bio-design engineering and photoisomerism induced wavelength modulation
Authors: Wolde-Michael Emmanuel , Roberts Aled D. , Heyes Derren J. , Dumanli Ahu G. , Blaker Jonny J. , Takano Eriko , Scrutton Nigel S. 
Published: July 2021

AbstractThe remarkable camouflage capabilities of cephalopods have inspired many to develop dynamic optical materials which exploit certain design principles and/or material properties from cephalopod dermal cells. Here, the angle-dependent optical properties of various single-layer reflectin thin-films on Si wafers are characterized within the UV–Vis–NIR regions. Following this, initial efforts to design, fabricate, and optically characterize a bio-inspired reflectin-based multilayer reflector is described, which was found to conserve the optical properties of single layer films but exhibit reduced angle-dependent visible reflectivity. Finally, we report the integration of phytochrome visible light-induced isomerism into reflectin-based films, which was found to subtly modulate reflectin thin-film reflectivity.
The effect of stretch–shortening magnitude and muscle–tendon unit length on performance enhancement in a stretch–shortening cycle
Authors: Groeber Martin , Stafilidis Savvas , Baca Arnold 
Published: July 2021

AbstractStretch-induced residual force enhancement (rFE) is associated with increased performance in a stretch–shortening cycle (SSC). Although the influence of different range of motions and muscle–tendon unit lengths has been investigated in pure stretch-hold experiments in vivo, the contribution to a SSC movement in human muscles remains unclear. In two sessions, 25 healthy participants performed isometric reference (ISO), shortening hold (SHO) and SSC contractions on an isokinetic dynamometer. We measured the net knee-joint torque, rotational mechanical work, knee kinematics and fascicle behavior (m. vastus lateralis) of the upper right leg.
In session 1 the SHO- and SSC-magnitude was changed respectively (SHO: 50°–20°, 80°–20° and 110°–20°; SSC: 20°–50°–20°, 20°–80°–20° and 20°–110°–20°) and in session 2 the muscle–tendon unit length (SHO: 50°–20°, 80°–50° and 110°–80°; SSC: 20°–50°–20°, 50°–80°–50° and 80°–110°–80°; straight leg = 0°). In both sessions, rotational work was significantly (p < 0.05) increased in the SSC compared to the SHO contractions (in the range of 8.1–17.9%). No significant difference of joint torque was found in the steady-state for all SSC-magnitudes compared to the corresponding SHO contractions in session 1. In session 2, we found only significantly (p < 0.05) less depressed joint torque in the SSC at the longest muscle–tendon unit length compared to the corresponding SHO condition, without any differences in knee kinematics and fascicle behavior. Therefore, the physiological relevance of rFE might be particularly important for movements at greater muscle–tendon unit lengths.
The role of leptospiremia and specific immune response in severe leptospirosis
Authors: Limothai Umaporn , Lumlertgul Nuttha , Sirivongrangson Phatadon , Kulvichit Win , Tachaboon Sasipha , Dinhuzen Janejira , Chaisuriyong Watchadaporn , Peerapornratana Sadudee , Chirathaworn Chintana , Praditpornsilpa Kearkiat , Eiam-Ong Somchai , Tungsanga Kriang , Srisawat Nattachai 
Published: July 2021

AbstractLeptospirosis can cause a high mortality rate, especially in severe cases. This multicenter cross-sectional study aimed to examine both host and pathogen factors that might contribute to the disease severity. A total of 217 leptospirosis patients were recruited and divided into two groups of non-severe and severe. Severe leptospirosis was defined by a modified sequential organ failure assessment (mSOFA) score of more than two or needed for mechanical ventilation support or had pulmonary hemorrhage or death. We found that leptospiremia, plasma neutrophil gelatinase-associated lipocalin (pNGAL), and interleukin 6 (IL-6) at the first day of enrollment (day 1) and microscopic agglutination test (MAT) titer at 7 days after enrollment (days 7) were significantly higher in the severe group than in the non-severe group. After adjustment for age, gender, and the days of fever, there were statistically significant associations of baseline leptospiremia level (OR 1.70, 95% CI 1.23–2.34, p = 0.001), pNGAL (OR 9.46, 95% CI 4.20–21.33, p < 0.001), and IL-6 (OR 2.82, 95% CI 1.96–4.07, p < 0.001) with the severity. In conclusion, a high leptospiremia, pNGAL, and IL-6 level at baseline were associated with severe leptospirosis.
Coral larval settlement preferences linked to crustose coralline algae with distinct chemical and microbial signatures
Authors: Jorissen Hendrikje , Galand Pierre E. , Bonnard Isabelle , Meiling Sonora , Raviglione Delphine , Meistertzheim Anne-Leila , Hédouin Laetitia , Banaigs Bernard , Payri Claude E. , Nugues Maggy M. 
Published: July 2021

AbstractThe resilience of coral reefs is dependent on the ability of corals to settle after disturbances. While crustose coralline algae (CCA) are considered important substrates for coral settlement, it remains unclear whether coral larvae respond to CCA metabolites and microbial cues when selecting sites for attachment and metamorphosis. This study tested the settlement preferences of an abundant coral species (Acropora cytherea) against six different CCA species from three habitats (exposed, subcryptic and cryptic), and compared these preferences with the metabolome and microbiome characterizing the CCA. While all CCA species induced settlement, only one species (Titanoderma prototypum) significantly promoted settlement on the CCA surface, rather than on nearby dead coral or plastic surfaces. This species had a very distinct bacterial community and metabolomic fingerprint. Furthermore, coral settlement rates and the CCA microbiome and metabolome were specific to the CCA preferred habitat, suggesting that microbes and/or chemicals serve as environmental indicators for coral larvae. Several amplicon sequence variants and two lipid classes—glycoglycerolipids and betaine lipids—present in T. prototypum were identified as potential omic cues influencing coral settlement. These results support that the distinct microbiome and metabolome of T. prototypum may promote the settlement and attachment of coral larvae.
Cellular senescence promotes endothelial activation through epigenetic alteration, and consequently accelerates atherosclerosis
Authors: Honda Sakiko , Ikeda Koji , Urata Ryota , Yamazaki Ekura , Emoto Noriaki , Matoba Satoaki 
Published: July 2021

AbstractSenescent vascular cells are detected in atherosclerotic lesion, and its involvement in the development of atherosclerosis has been revealed; however, whether and the mechanism by which endothelial cell (EC) senescence is causally implicated in atherosclerosis remains unclear. We here investigate a role of EC senescence in atherosclerosis by utilizing EC-specific progeroid mice that overexpress the dominant negative form of telomeric repeat-binding factor 2 under the control of the Tie2 or vascular endothelial cadherin promoter. EC-specific progeria accelerated atherosclerosis in mice with target deletion of ApoE. Mechanistically, senescent ECs were markedly sensitive for inflammation-mediated VCAM-1 induction, leading to enhanced monocyte adhesion. Inhibition of NF-κB signaling abolished the enhanced inflammatory responses in senescent ECs, while NF-κB nuclear translocation in response to TNF-α were similar between young and senescent ECs. We found a higher association of VCAM-1 gene with active histone H3 trimethylated on lysine 4, leading to increased NF-κB accessibility in senescent ECs. Our data revealed that EC cellular senescence causes endothelial hyper-inflammability through epigenetic alteration, which consequently accelerates atherosclerosis. Therefore, EC senescence is a promising therapeutic target for the prevention and/or treatment of atherosclerotic disease in elderly population.
A comprehensive transferability evaluation of U-Net and ResU-Net for landslide detection from Sentinel-2 data (case study areas from Taiwan, China, and Japan)
Authors: Ghorbanzadeh Omid , Crivellari Alessandro , Ghamisi Pedram , Shahabi Hejar , Blaschke Thomas 
Published: July 2021

AbstractEarthquakes and heavy rainfalls are the two leading causes of landslides around the world. Since they often occur across large areas, landslide detection requires rapid and reliable automatic detection approaches. Currently, deep learning (DL) approaches, especially different convolutional neural network and fully convolutional network (FCN) algorithms, are reliably achieving cutting-edge accuracies in automatic landslide detection. However, these successful applications of various DL approaches have thus far been based on very high resolution satellite images (e.g., GeoEye and WorldView), making it easier to achieve such high detection performances. In this study, we use freely available Sentinel-2 data and ALOS digital elevation model to investigate the application of two well-known FCN algorithms, namely the U-Net and residual U-Net (or so-called ResU-Net), for landslide detection. To our knowledge, this is the first application of FCN for landslide detection only from freely available data. We adapt the algorithms to the specific aim of landslide detection, then train and test with data from three different case study areas located in Western Taitung County (Taiwan), Shuzheng Valley (China), and Eastern Iburi (Japan). We characterize three different window size sample patches to train the algorithms. Our results also contain a comprehensive transferability assessment achieved through different training and testing scenarios in the three case studies. The highest f1-score value of 73.32% was obtained by ResU-Net, trained with a dataset from Japan, and tested on China’s holdout testing area using the sample patch size of 64 × 64 pixels.
W27 IgA suppresses growth of Escherichia in an in vitro model of the human intestinal microbiota
Authors: Sasaki Kengo , Mori Tomoyuki , Hoshi Namiko , Sasaki Daisuke , Inoue Jun , Shinkura Reiko , Kondo Akihiko 
Published: July 2021

AbstractW27 monoclonal immunoglobulin A (IgA) suppresses pathogenic Escherichia coli cell growth; however, its effect on the human intestine remains unclear. We aimed to determine how W27 IgA affects the human colonic microbiota using the in vitro microbiota model. This model was established using fecal samples collected from 12 healthy volunteers; after anaerobic cultivation, each model was found to retain the genera found in the original human fecal samples. After pre-incubating W27 IgA with the respective fecal sample under aerobic conditions, the mixture of W27 IgA (final concentration, 0.5 μg/mL) and each fecal sample was added to the in vitro microbiota model and cultured under anaerobic conditions. Next-generation sequencing of the bacterial 16S rRNA gene revealed that W27 IgA significantly decreased the relative abundance of bacteria related to the genus Escherichia in the model. Additionally, at a final concentration of 5 μg/mL, W27 IgA delayed growth in the pure culture of Escherichia coli isolated from human fecal samples. Our study thus revealed the suppressive effect of W27 IgA on the genus Escherichia at relatively low-concentrations and the usefulness of an in vitro microbiota model to evaluate the effect of IgA as a gut microbiota regulator.
Cocaine self-administration induces sex-dependent protein expression in the nucleus accumbens
Authors: López Alberto J. , Johnson Amy R. , Euston Tanner J. , Wilson Rashaun , Nolan Suzanne O. , Brady Lillian J. , Thibeault Kimberly C. , Kelly Shannon J. , Kondev Veronika , Melugin Patrick , Kutlu M. Gunes , Chuang Emily , Lam TuKiet T. , Kiraly Drew D. , Calipari Erin S. 
Published: July 2021

AbstractSubstance use disorder (SUD) is a chronic neuropsychiatric condition characterized by long-lasting alterations in the neural circuitry regulating reward and motivation. Substantial work has focused on characterizing the molecular substrates that underlie these persistent changes in neural function and behavior. However, this work has overwhelmingly focused on male subjects, despite mounting clinical and preclinical evidence that females demonstrate dissimilar progression to SUD and responsivity to stimulant drugs of abuse, such as cocaine. Here, we show that sex is a critical biological variable that defines drug-induced plasticity in the nucleus accumbens (NAc). Using quantitative mass spectrometry, we assessed the protein expression patterns induced by cocaine self-administration and demonstrated unique molecular profiles between males and females. We show that 1. Cocaine self-administration induces non-overlapping protein expression patterns in significantly regulated proteins in males and females and 2. Critically, cocaine-induced protein regulation differentially interacts with sex to eliminate basal sexual dimorphisms in the proteome. Finally, eliminating these baseline differences in the proteome is concomitant with the elimination of sex differences in behavior for non-drug rewards. Together, these data suggest that cocaine administration is capable of rewriting basal proteomic function and reward-associated behaviors.
NetSquid, a NETwork Simulator for QUantum Information using Discrete events
Authors: Coopmans Tim , Knegjens Robert , Dahlberg Axel , Maier David , Nijsten Loek , de Oliveira Filho Julio , Papendrecht Martijn , Rabbie Julian , Rozpędek Filip , Skrzypczyk Matthew , Wubben Leon , de Jong Walter , Podareanu Damian , Torres-Knoop Ariana , Elkouss David , Wehner Stephanie 
Published: July 2021

AbstractIn order to bring quantum networks into the real world, we would like to determine the requirements of quantum network protocols including the underlying quantum hardware. Because detailed architecture proposals are generally too complex for mathematical analysis, it is natural to employ numerical simulation. Here we introduce NetSquid, the NETwork Simulator for QUantum Information using Discrete events, a discrete-event based platform for simulating all aspects of quantum networks and modular quantum computing systems, ranging from the physical layer and its control plane up to the application level. We study several use cases to showcase NetSquid’s power, including detailed physical layer simulations of repeater chains based on nitrogen vacancy centres in diamond as well as atomic ensembles. We also study the control plane of a quantum switch beyond its analytically known regime, and showcase NetSquid’s ability to investigate large networks by simulating entanglement distribution over a chain of up to one thousand nodes.
Observation of a giant mass enhancement in the ultrafast electron dynamics of a topological semimetal
Authors: Clark Oliver J. , Freyse Friedrich , Aguilera Irene , Frolov Alexander S. , Ionov Andrey M. , Bozhko Sergey I. , Yashina Lada V. , Sánchez-Barriga Jaime 
Published: July 2021

AbstractTopological phases of matter offer exciting possibilities to realize lossless charge and spin information transport on ultrafast time scales. However, this requires detailed knowledge of their nonequilibrium properties. Here, we employ time-, spin- and angle-resolved photoemission to investigate the ultrafast response of the Sb(111) spin-polarized surface state to femtosecond-laser excitation. The surface state exhibits a giant mass enhancement which is observed as a kink structure in its energy-momentum dispersion above the Fermi level. The kink structure, originating from the direct coupling of the surface state to the bulk continuum, is characterized by an abrupt change in the group velocity by ~70%, in agreement with our GW-based band structure calculations. Our observation of this connectivity in the transiently occupied band structure enables the unambiguous experimental verification of the topological nature of the surface state. The influence of bulk-surface coupling is further confirmed by our measurements of the electron dynamics, which show that bulk and surface states behave as a single thermalizing electronic population with distinct contributions from low-k electron-electron and high-k electron-phonon scatterings. These findings are important for future applications of topological semimetals and their excitations in ultrafast spintronics.
The formation of cage phosphoranes and their rearrangements in the reactions of substituted 2-(3-oxo-3-phenyl)ethoxybenzo[d]-1,3,2-dioxaphospholes with perfluorodiacetyl
Authors: Mironov Vladimir F. , Dimukhametov Mudaris N. , Ivkova Gulnara A. , Khayarov Khasan R. , Islamov Daut R. , Litvinov Igor A. 
Published: July 2021

Unexpected Kukhtin–Ramirez reaction mechanism of compound I with perfluorodiacetyl was found. The process proceeded via the [4+4]-cycloaddition forming cage species II, which further rearranged through spirophosphorane III into cage phosphorane IV.