bluuebunny/crossref_metadata_2025_split huggingface dataset:
Mass spectrometry-based metabolomics for the discovery of candidate markers of flavonoid and polyphenolic intake in adults
Authors: Charles David , Gethings Lee A. , Potts James F. , Burney Peter G. J. , Garcia-Larsen Vanessa 
Published: March 2021

AbstractRobust biological markers of dietary exposure are essential in improving the understanding of the link between diet and health outcomes. Polyphenolic compounds, including flavonoids, have been proposed to mitigate the risk of chronic diseases where oxidative stress and inflammation play a central role. Biomarkers can provide objective measurement of the levels of polyphenolic compounds. In this study, we provide methodology to identify potential candidate markers of polyphenol intake in human serum. Seventeen participants from the UK arm of the Global Allergy and Asthma Network of Excellence (GA2LEN) had their dietary intake estimated using a validated food frequency questionnaire, and serum samples were assessed using mass spectrometry to identify potential candidate markers. 144 features were assigned identities, of these we identified four biologically relevant compounds (rhamnazin 3-rutinoside, 2-galloyl-1,4-galactarolactone methyl ester, 2″,32″-di-O-p-coumaroylafzelin and cyclocommunin), which were significantly increased in the serum of participants with high predicted level of fruit and vegetable intake. 2-galloyl-1,4-galactarolactone methyl ester was strongly correlated with total flavonoids (r = 0.62; P = 0.005), flavan-3-ols (r = 0.67; P = 0.002) as well as with other four subclasses. Rhamnazin 3-rutinoside showed strong correlation with pro-anthocyanidins (r = 0.68; P = 0.001), flavones (r = 0.62; P = 0.005). Our results suggest that serum profiling for these compounds might be an effective way of establishing the relative intake of flavonoids and could contribute to improve the accuracy of epidemiological methods to ascertain flavonoid intake.
Microsatellite analysis reveals low genetic diversity in managed populations of the critically endangered gharial (Gavialis gangeticus) in India
Authors: Sharma Surya Prasad , Ghazi Mirza Ghazanfarullah , Katdare Suyash , Dasgupta Niladri , Mondol Samrat , Gupta Sandeep Kumar , Hussain Syed Ainul 
Published: March 2021

AbstractThe gharial (Gavialis gangeticus) is a critically endangered crocodylian, endemic to the Indian subcontinent. The species has experienced severe population decline during the twentieth century owing to habitat loss, poaching, and mortalities in passive fishing. Its extant populations have largely recovered through translocation programmes initiated in 1975. Understanding the genetic status of these populations is crucial for evaluating the effectiveness of the ongoing conservation efforts. This study assessed the genetic diversity, population structure, and evidence of genetic bottlenecks of the two managed populations inhabiting the Chambal and Girwa Rivers, which hold nearly 80% of the global gharial populations. We used seven polymorphic nuclear microsatellite loci and a 520 bp partial fragment of the mitochondrial control region (CR). The overall mean allelic richness (Ar) was 2.80 ± 0.40, and the observed (Ho) and expected (He) heterozygosities were 0.40 ± 0.05 and 0.39 ± 0.05, respectively. We observed low levels of genetic differentiation between populations (FST = 0.039,P < 0.05;G’ST = 0.058,P < 0.05 Jost’sD = 0.016,P < 0.05). The bottleneck analysis using theMratio (Chambal = 0.31 ± 0.06; Girwa = 0.41 ± 0.12) suggested the presence of a genetic bottleneck in both populations. The mitochondrial CR also showed a low level of variation, with two haplotypes observed in the Girwa population. This study highlights the low level of genetic diversity in the two largest managed gharial populations in the wild. Hence, it is recommended to assess the genetic status of extant wild and captive gharial populations for planning future translocation programmes to ensure long-term survival in the wild.
Exploring a sustainable building’s impact on occupant mental health and cognitive function in a virtual environment
Authors: Hu Ming , Simon Madlen , Fix Spencer , Vivino Anthony A. , Bernat Edward 
Published: March 2021

AbstractEven though people spend the majority of their time indoors, the role of buildings in shaping human experience is still not well understood. The objective of this experimental project is to develop, test, and validate a data-driven neuroscience approach to understand the built environment’s impact on occupant cognitive function and mental health. The present study utilized virtual environments and electroencephalogram (EEG) and event-related potential (ERP) approaches, to provide objective neurophysiological information about how sustainable buildings (SBs) impact people’s affective and cognitive functioning differently compared to conventional building (CBs). The long-term goal is to assess the validity of sustainable building design protocols in promoting and increasing mental health and well-being and the mechanism used to accomplish these increases. The findings showed test subjects demonstrated increased visual system engagement and modulated attentional focus and control processing in the SB compared to the CB environments. The findings can be explained by the cognitive load theory, which is consistent with the interpretation of greater focus on the present environment and reduced internal mental processing (cf. mindfulness), based on the observed increased theta/delta activities and greater engagement of visual systems and corresponding decreases in frontal activity in the SB environment. In addition, the combination of virtual environment (VE) and EEG/ERP has the potential to advance design methods by soliciting occupants’ responses prior to completion of the projects. Building design is more than aesthetics; expanding the horizon for neuroscience would eventually result in a new knowledge base for building design, particularly sustainable building design, since the sustainability of the building often needs to be quantified.
Pseudomonas fluorescens F113 type VI secretion systems mediate bacterial killing and adaption to the rhizosphere microbiome
Authors: Durán David , Bernal Patricia , Vazquez-Arias David , Blanco-Romero Esther , Garrido-Sanz Daniel , Redondo-Nieto Miguel , Rivilla Rafael , Martín Marta 
Published: March 2021

AbstractThe genome of Pseudomonas fluorescens F113, a model rhizobacterium and a plant growth-promoting agent, encodes three putative type VI secretion systems (T6SSs); F1-, F2- and F3-T6SS. Bioinformatic analysis of the F113 T6SSs has revealed that they belong to group 3, group 1.1, and group 4a, respectively, similar to those previously described in Pseudomonas aeruginosa. In addition, in silico analyses allowed us to identify genes encoding a total of five orphan VgrG proteins and eight putative effectors (Tfe), some with their cognate immunity protein (Tfi) pairs. Genes encoding Tfe and Tfi are found in the proximity of P. fluorescens F113 vgrG, hcp, eagR and tap genes. RNA-Seq analyses in liquid culture and rhizosphere have revealed that F1- and F3-T6SS are expressed under all conditions, indicating that they are active systems, while F2-T6SS did not show any relevant expression under the tested conditions. The analysis of structural mutants in the three T6SSs has shown that the active F1- and F3-T6SSs are involved in interbacterial killing while F2 is not active in these conditions and its role is still unknown.. A rhizosphere colonization analysis of the double mutant affected in the F1- and F3-T6SS clusters showed that the double mutant was severely impaired in persistence in the rhizosphere microbiome, revealing the importance of these two systems for rhizosphere adaption.
Identification of positive and negative regulators in the stepwise developmental progression towards infectivity in Trypanosoma brucei
Authors: Toh Justin Y. , Nkouawa Agathe , Sánchez Saúl Rojas , Shi Huafang , Kolev Nikolay G. , Tschudi Christian 
Published: March 2021

AbstractTrypanosoma brucei is a protozoan parasite that causes important human and livestock diseases in sub-Saharan Africa. By overexpressing a single RNA-binding protein, RBP6, in non-infectious procyclics trypanosomes, we previously recapitulated in vitro the events occurring in the tsetse fly vector, namely the development of epimastigotes and infectious, quiescent metacyclic parasites. To identify genes involved in this developmental progression, we individually targeted 86 transcripts by RNAi in the RBP6 overexpression cell line and assessed the loss-of-function phenotypes on repositioning the kinetoplast, an organelle that contains the mitochondrial genome, the expression of BARP or brucei alanine rich protein, a marker for epimastigotes, and metacyclic variant surface glycoprotein. This screen identified 22 genes that positively or negatively regulate the stepwise progression towards infectivity at different stages. Two previously uncharacterized putative nucleic acid binding proteins emerged as potent regulators, namely the cold shock domain-containing proteins CSD1 and CSD2. RNA-Seq data from a selected group of cell lines further revealed that the components of gene expression regulatory networks identified in this study affected the abundance of a subset of transcripts in very similar fashion. Finally, our data suggest a considerable overlap between the genes that regulate the formation of stumpy bloodstream form trypanosomes and the genes that govern the development of metacyclic form parasites.
Symmetry perception with spiking neural networks
Authors: George Jonathan K. , Soci Cesare , Miscuglio Mario , Sorger Volker J. 
Published: March 2021

AbstractMirror symmetry is an abundant feature in both nature and technology. Its successful detection is critical for perception procedures based on visual stimuli and requires organizational processes. Neuromorphic computing, utilizing brain-mimicked networks, could be a technology-solution providing such perceptual organization functionality, and furthermore has made tremendous advances in computing efficiency by applying a spiking model of information. Spiking models inherently maximize efficiency in noisy environments by placing the energy of the signal in a minimal time. However, many neuromorphic computing models ignore time delay between nodes, choosing instead to approximate connections between neurons as instantaneous weighting. With this assumption, many complex time interactions of spiking neurons are lost. Here, we show that the coincidence detection property of a spiking-based feed-forward neural network enables mirror symmetry. Testing this algorithm exemplary on geospatial satellite image data sets reveals how symmetry density enables automated recognition of man-made structures over vegetation. We further demonstrate that the addition of noise improves feature detectability of an image through coincidence point generation. The ability to obtain mirror symmetry from spiking neural networks can be a powerful tool for applications in image-based rendering, computer graphics, robotics, photo interpretation, image retrieval, video analysis and annotation, multi-media and may help accelerating the brain-machine interconnection. More importantly it enables a technology pathway in bridging the gap between the low-level incoming sensor stimuli and high-level interpretation of these inputs as recognized objects and scenes in the world.
Burrow emergence rhythms of Nephrops norvegicus by UWTV and surveying biases
Authors: Aguzzi Jacopo , Bahamon Nixon , Doyle Jennifer , Lordan Colm , Tuck Ian D. , Chiarini Matteo , Martinelli Michela , Company Joan B. 
Published: March 2021

AbstractUnderwater Television (UWTV) surveys provide fishery-independent stock size estimations of the Norway lobster (Nephrops norvegicus), based directly on burrow counting using the survey assumption of “one animal = one burrow”. However, stock size may be uncertain depending on true rates of burrow occupation. For the first time, 3055 video transects carried out in several Functional Units (FUs) around Ireland were used to investigate this uncertainty. This paper deals with the discrimination of burrow emergence and door-keeping diel behaviour inNephrops norvegicus,which is one of the most commercially important fisheries in Europe. Comparisons of burrow densities with densities of visible animals engaged in door-keeping (i.e. animals waiting at the tunnel entrance) behaviour and animals in full emergence, were analysed at time windows of expected maximum population emergence. Timing of maximum emergence was determined using wave-form analysis and GAM modelling. The results showed an average level of 1 visibleNephropsindividual per 10 burrow systems, depending on sampling time and depth. This calls into question the current burrow occupancy assumption which may not hold true in all FUs. This is discussed in relation to limitations of sampling methodologies and new autonomous robotic technological solutions for monitoring.
Genesis, controls and risk prediction of H2S in coal mine gas
Authors: Xie Weidong , Wang Hua , Wang Meng , He Ye 
Published: March 2021

AbstractAbnormal H2S concentration in coal mine gas is a serious threat to normal mining activities, which has caused serious loss of life and property in many coal mines. This study explores the genesis and influencing factors of abnormal H2S concentration in coal mine gas, taking the Xishan coal mine in the Fukang mining area as a case study. The H2S formation by bacterial sulfate reduction (BSR) is simulated with a bacterial culture experiment and that by thermochemical sulfate reduction (TSR) is simulated with a thermal reduction experiment. The potential for a magmatic genesis is assessed using data regarding the tectonic evolution and history of magma intrusion in the study area. The factors influencing H2S formation and enrichment are then analyzed by a comprehensive consideration of the characteristics of coal, the gas composition, the coal seam groundwater geochemistry and other geological factors in the study area. The results show that the study area meets the necessary conditions for the BSR process to operate and that there is widespread BSR derived H2S. TSR genesis H2S mainly forms in coal fire areas and their vicinity, while there is little contribution from magmatically formed H2S. The concentration of H2S is negatively correlated with the buried depth of the coal seam, the concentrations of CH4, N2 and CO2, and the ash yield; and it is positively correlated with the volatiles yield and total sulfur content. In addition, in areas with abnormally high H2S concentration, the concentration of SO42− is obviously lower, HCO3− + CO32− concentration is higher, and the HCO3−/SO42− value is larger than that in non-anomalous areas. Geologically, H2S enrichment is found to be controlled by lithology, tectonism, and hydrogeological conditions. Moreover, the results of predictive modeling show that areas prone to abnormal H2S concentration are generally spatially correlated with coal fire areas. In this study, the genetic types of H2S and the factors controlling their formation and retention are discussed, producing research results that have guiding significance for the prediction and prevention of the coal mine disasters that arises from abnormal H2S concentration.
Atrial high‑rate episodes and risk of major adverse cardiovascular events in patients with dual chamber permanent pacemakers: a retrospective study
Authors: Lu Wei-Da , Chen Ju-Yi 
Published: March 2021

AbstractPatients with atrial high-rate episodes (AHRE) are at higher risk of major adverse cardiovascular events (MACE). The cutoff threshold for AHRE duration for MACE, with/without history of atrial fibrillation (AF) or myocardial infarction (MI), is unknown. A total of 481 consecutive patients with/without history of AF or MI receiving dual-chamber pacemaker implantation were included. The primary outcome was a composite endpoint of MACE after AHRE ≥ 5 min, ≥ 6 h, and ≥ 24 h. AHRE was defined as > 175 bpm (MEDTRONIC) or > 200 bpm (BIOTRONIK) lasting ≥ 5 min. Cox regression analysis with time-dependent covariates was conducted. Patients’ mean age was 75.3 ± 10.7 years and 188 (39.1%) developed AHRE ≥ 5 min, 115 (23.9%) ≥ 6 h, and 83 (17.3%) ≥ 24 h. During follow-up (median 39.9 ± 29.8 months), 92 MACE occurred (IR 5.749%/year, 95% CI 3.88–5.85). AHRE ≥ 5 min (HR 5.252, 95% CI 2.575–10.715, P < 0.001) and ≥ 6 h (HR 2.548, 95% CI 1.284–5.058, P = 0.007) was independently associated with MACE, but not AHRE ≥ 24 h. Patients with history of MI (IR 17.80%/year) had higher MACE incidence than those without (IR 3.77%/year, p = 0.001). Significant differences were found between MACE patients with/without history of AF in AHRE ≥ 5 min but not AHRE ≥ 6 h or ≥ 24 h. Patients with dual-chamber pacemakers who develop AHRE have increased risk of MACE, particularly after history of AF or MI.
Crystal structures and mechanical properties of osmium diboride at high pressure
Authors: Wang Yi X. , Liu Ying Y. , Yan Zheng X. , Liu Wei , Zhou Gao L. , Xiong Ke Z. 
Published: March 2021

AbstractWe have investigated the crystal structures and mechanical properties of osmium diboride (OsB2) based on the density functional theory. The structures of OsB2 from 0 to 400 GPa were predicted using the particle swarm optimization algorithm structure prediction technique. The orthorhombic Pmmn structure of OsB2 (oP6-OsB2) was found to be the most stable phase under zero pressure and it will transfer to the hexagonal P63/mmc structure (hP6-OsB2) around 12.4 GPa. Meanwhile, we have discovered a new stable orthorhombic Immm structure (oI12-OsB2) above 379.6 GPa. After that, a thorough and comprehensive investigation on mechanical properties of different OsB2 phases is performed in this work. Further studies showed that the hardness of oP6-OsB2 and hP6-OsB2 at zero pressure is 15.6 and 20.1 GPa, while that for oI12-OsB2 under 400 GPa is 15.4 GPa, indicating that these three phases should be potentially hard materials rather than superhard materials. Finally, the pressure–temperature phase diagram of OsB2 is constructed for the first time by using the quasi-harmonic approximation method. Our results showed that the transition pressures of oP6-OsB2 → hP6-OsB2 and hP6-OsB2 → oI12-OsB2 all decreases appreciably with the increase of temperature.
Comparison of clinical severity and epidemiological spectrum between coronavirus disease 2019 and influenza in children
Authors: Pokorska-Śpiewak Maria , Talarek Ewa , Popielska Jolanta , Nowicka Karolina , Ołdakowska Agnieszka , Zawadka Konrad , Kowalik-Mikołajewska Barbara , Tomasik Anna , Dobrzeniecka Anna , Lipińska Marta , Krynicka-Czech Beata , Coupland Urszula , Stańska-Perka Aleksandra , Ludek Małgorzata , Marczyńska Magdalena 
Published: March 2021

AbstractData on the novel coronavirus disease 2019 (COVID-19) in children are limited, and studies from Europe are scarce. We analyzed the clinical severity and epidemiologic aspects of COVID-19 in consecutive children aged 0–18 years, referred with a suspicion of COVID-19 between February 1, and April 15, 2020. RT-PCR on a nasopharyngeal swab was used to confirm COVID-19. 319 children met the criteria of a suspected case. COVID-19 was diagnosed in 15/319 (4.7%) patients (8 male; mean age 10.5 years). All of them had household contact with an infected relative. Five (33.3%) patients were asymptomatic. In 9/15 (60.0%) children, the course of the disease was mild, and in 1/15 (6.7%), it was moderate, with the following symptoms: fever (46.7%), cough (40%), diarrhea (20%), vomiting (13.3%), rhinitis (6.7%), and shortness of breath (6.7%). In the COVID-19-negative patients, other infections were confirmed, including influenza in 32/319 (10%). The clinical course of COVID-19 and influenza differed significantly based on the clinical presentation. In conclusion, the clinical course of COVID-19 in children is usually mild or asymptomatic. In children suspected of having COVID-19, other infections should not be overlooked. The main risk factor for COVID-19 in children is household contact with an infected relative.
Development of a photochemical thrombosis investigation system to obtain a rabbit ischemic stroke model
Authors: Kim Yoonhee , Lee Yoon Bum , Bae Seung Kuk , Oh Sung Suk , Choi Jong-ryul 
Published: March 2021

AbstractPhotochemical thrombosis is a method for the induction of ischemic stroke in the cerebral cortex. It can generate localized ischemic infarcts in the desired region; therefore, it has been actively employed in establishing an ischemic stroke animal model and in vivo assays of diagnostic and therapeutic techniques for stroke. To establish a rabbit ischemic stroke model and overcome the shortcoming of previous studies that were difficult to build a standardized photothrombotic rabbit model, we developed a photochemical thrombosis induction system that can produce consistent brain damage on a specific area. To verify the generation of photothrombotic brain damage using the system, longitudinal magnetic resonance imaging, 2,3,5-triphenyltetrazolium chloride staining, and histological staining were applied. These analytical methods have a high correlation for ischemic infarction and are appropriate for analyzing photothrombotic brain damage in the rabbit brain. The results indicated that the photothrombosis induction system has a main advantage of being accurately controlled a targeted region of photothrombosis and can produce cerebral hemisphere lesions on the target region of the rabbit brain. In conjugation with brain atlas, it can induce photochemical ischemic stroke locally in the part of the brain that is responsible for a particular brain function and the system can be used to develop animal models with degraded specific functions. Also, the photochemical thrombosis induction system and a standardized rabbit ischemic stroke model that uses this system have the potential to be used for verifications of biomedical techniques for ischemic stroke at a preclinical stage in parallel with further performance improvements.
Ultrathin dual-mode vortex beam generator based on anisotropic coding metasurface
Authors: Zhang Liang , Guo Jie , Ding Tongyu 
Published: March 2021

AbstractIn this paper, an anisotropic coding metasurface is proposed to achieve dual-mode vortex beam generator by independently manipulating the orthogonally linearly polarized waves. The metasurface is composed of ultrathin single-layer ground-backed Jerusalem cross structure, which can provide complete and independent control of the orthogonally linearly polarized incident waves with greatly simplified design process. As proof of concept, a metasurface is designed to generate vortex beams with different topological charges under orthogonal polarizations operating at 15 GHz. Experimental measurements performed on fabricated prototype reveal high quality, and show good agreements with theoretical designs and simulation results. Such ultrathin dual-mode vortex beam generator may find potential applications in wireless communication systems in microwave region.