bluuebunny/crossref_metadata_2025_split huggingface dataset:
Identification of antigenic domains and peptides from VP15 of white spot syndrome virus and their antiviral effects in Marsupenaeus japonicus
Authors: Boonyakida Jirayu , Xu Jian , Satoh Jun , Nakanishi Takafumi , Mekata Tohru , Kato Tatsuya , Park Enoch Y. 
Published: June 2021

AbstractWhite spot syndrome virus (WSSV) is one of the most devastating pathogens in penaeid shrimp and can cause massive damage in shrimp aquaculture industries. Previously, the WSSV structural protein VP15 was identified as an antigenic reagent against WSSV infections. In this study, we truncated this protein into VP15(1–25), VP15(26–57), VP15(58–80), and VP15(1–25,58–80). The purified proteins from theE. coliexpression system were assayed as potential protective agents in Kuruma shrimp (Marsupenaeus japonicus) using the prime-and-boost strategy. Among the four truncated constructs, VP15(26–57)provided a significant improvement in the shrimp survival rate after 20 days of viral infection. Subsequently, four peptides (KR11, SR11, SK10, and KK13) from VP15(26–57)were synthesized and applied in an in vivo assay. Our results showed that SR11 could significantly enhance the shrimp survival rate, as determined from the accumulated survival rate. Moreover, a multiligand binding protein with a role in the host immune response and a possible VP15-binding partner, MjgC1qR, from the hostM. japonicuswere employed to test its binding with the VP15 protein. GST pull-down assays revealed that MjgC1qR binds with VP15, VP15(26–57), and SR11. Taken together, we conclude that SR11 is a determinant antigenic peptide of VP15 conferring antiviral activity against WSSV.
An estimation on the mechanical stabilities of SAMs by low energy Ar+ cluster ion collision
Authors: Tong Y. , Berdiyorov G. R. , Sinopoli A. , Madjet M. E. , Esaulov V. A. , Hamoudi H. 
Published: June 2021

AbstractThe stability of the molecular self-assembled monolayers (SAMs) is of vital importance to the performance of the molecular electronics and their integration to the future electronics devices. Here we study the effect of electron irradiation-induced cross-linking on the stability of self-assembled monolayer of aromatic 5,5′-bis(mercaptomethyl)-2,2′-bipyridine [BPD; HS-CH2-(C5H3N)2-CH2-SH] on Au (111) single crystal surface. As a refence, we also study the properties of SAMs of electron saturated 1-dodecanethiol [C12; CH3-(CH2)11-SH] molecules. The stability of the considered SAMs before and after electron-irradiation is studied using low energy Ar+ cluster depth profiling monitored by recording the X-ray photoelectron spectroscopy (XPS) core level spectra and the UV-photoelectron spectroscopy (UPS) in the valance band range. The results indicate a stronger mechanical stability of BPD SAMs than the C12 SAMs. The stability of BPD SAMs enhances further after electron irradiation due to intermolecular cross-linking, whereas the electron irradiation results in deterioration of C12 molecules due to the saturated nature of the molecules. The depth profiling time of the cross-linked BPD SAM is more than 4 and 8 times longer than the profiling time obtained for pristine and BPD and C12 SAMs, respectively. The UPS results are supported by density functional theory calculations, which show qualitative agreement with the experiment and enable us to interpret the features in the XPS spectra during the etching process for structural characterization. The obtained results offer helpful options to estimate the structural stability of SAMs which is a key factor for the fabrication of molecular devices.
DCBLD1 is associated with the integrin signaling pathway and has prognostic value in non-small cell lung and invasive breast carcinoma
Authors: Cardin Guillaume B. , Bernard Monique , Rodier Francis , Christopoulos Apostolos 
Published: June 2021

AbstractGermline single nucleotide polymorphisms in the promoter region of the DCBLD1 gene are associated with non-smoking cases of both non-small cell lung carcinoma (NSCLC) and human papillomavirus-negative head and neck cancer. However the clinical relevance and function of DCBLD1 remain unclear. This multicenter retrospective study was designed to evaluate the prognostic value and function of DCBLD1 in the four main solid cancers: NSCLC, invasive breast carcinoma, colorectal adenocarcinoma and prostate adenocarcinoma. We included the following cohorts: GSE81089 NSCLC, METABRIC invasive breast carcinoma, GSE14333 colorectal adenocarcinoma, GSE70770 prostate adenocarcinoma and The Cancer Genome Atlas (TCGA) Firehose Legacy cohorts of all four cancers. DCBLD1 gene expression was associated with a worse overall survival in multivariate analyses for both NSCLC cohorts (TCGA: P = 0.03 and GSE81089: P = 0.04) and both invasive breast carcinoma cohorts (TCGA: P = 0.02 and METABRIC: P < 0.001). Patients with high DCBLD1 expression showed an upregulation of the integrin signaling pathway in comparison to those with low DCBLD1 expression in the TCGA NSCLC cohort (FDR = 5.16 × 10–14) and TCGA invasive breast carcinoma cohort (FDR = 1.94 × 10–05).
Cardiorespiratory responses to exercise related to post-stroke fatigue severity
Authors: Oyake Kazuaki , Baba Yasuto , Suda Yuki , Murayama Jun , Mochida Ayumi , Ito Yuki , Abe Honoka , Kondo Kunitsugu , Otaka Yohei , Momose Kimito 
Published: June 2021

AbstractPhysical deconditioning after stroke may induce post-stroke fatigue. However, research on this association is limited. Our primary objective was to investigate the associations of post-stroke fatigue severity with oxygen uptake ($$\dot{\mathrm{V}}$$

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O2) at peak exercise and the time constant of $$\dot{\mathrm{V}}$$

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O2 kinetics (τ$$\dot{\mathrm{V}}$$

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O2) at exercise onset. The secondary objective was to examine the associations between fatigue and cardiorespiratory variables potentially affecting $$\dot{\mathrm{V}}$$

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O2 during exercise. Twenty-three inpatients from a subacute rehabilitation ward were enrolled in this study. The median (interquartile range) Fatigue Severity Scale (FSS) score, as a measure of fatigue, was 32 (range 27–42) points. The FSS score was not associated with $$\dot{\mathrm{V}}$$

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O2 at peak exercise during a symptom-limited graded exercise test (rho = − 0.264; p = 0.224), whereas it was significantly associated with τ$$\dot{\mathrm{V}}$$

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O2 during a submaximal constant-load exercise test (rho = 0.530; p = 0.009). A higher FSS score also significantly correlated with a longer time constant of cardiac output (CO) kinetics (rho = 0.476; p = 0.022). Our findings suggest that severe post-stroke fatigue is associated with delayed increases in $$\dot{\mathrm{V}}$$

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O2 and CO at the onset of exercise. Our findings can contribute to the development of an appropriate rehabilitation programme for individuals with post-stroke fatigue.
Sea level rise outpaced by vertical dune toe translation on prograding coasts
Authors: van IJzendoorn Christa O. , de Vries Sierd , Hallin Caroline , Hesp Patrick A. 
Published: June 2021

AbstractSea level is rising due to climate change and is expected to influence the development and dynamics of coastal dunes. However, the anticipated changes to coastal dunes have not yet been demonstrated using field data. Here, we provide evidence of dune translation that is characterized by a linear increase of the dune toe elevation on the order of 13–15 mm/year during recent decades along the Dutch coast. This rate of increase is a remarkable 7–8 times greater than the measured sea level rise. The observed vertical dune toe translation coincides with seaward movement of the dune toe (i.e., progradation), which shows similarities to prograding coasts in the Holocene both along the Dutch coast and elsewhere. Thus, we suspect that other locations besides the Dutch coast might also show such large ratios between sea level rise and dune toe elevation increase. This phenomenon might significantly influence the expected impact of sea level rise and climate change adaptation measures.
A methodology for an acute exercise clinical trial called dementia risk and dynamic response to exercise
Authors: White Dreu , John Casey S. , Kucera Ashley , Truver Bryce , Lepping Rebecca J. , Kueck Paul J. , Lee Phil , Martin Laura , Billinger Sandra A. , Burns Jeffrey M. , Morris Jill K. , Vidoni Eric D. 
Published: June 2021

AbstractExercise likely has numerous benefits for brain and cognition. However, those benefits and their causes remain imprecisely defined. If the brain does benefit from exercise it does so primarily through cumulative brief, “acute” exposures over a lifetime. The Dementia Risk and Dynamic Response to Exercise (DYNAMIC) clinical trial seeks to characterize the acute exercise response in cerebral perfusion, and circulating neurotrophic factors in older adults with and without the apolipoprotein e4 genotype (APOE4), the strongest genetic predictor of sporadic, late onset Alzheimer’s disease. DYNAMIC will enroll 60 older adults into a single moderate intensity bout of exercise intervention, measuring pre- and post-exercise cerebral blood flow (CBF) using arterial spin labeling, and neurotrophic factors. We expect that APOE4 carriers will have poor CBF regulation, i.e. slower return to baseline perfusion after exercise, and will demonstrate blunted neurotrophic response to exercise, with concentrations of neurotrophic factors positively correlating with CBF regulation. Preliminary findings on 7 older adults and 9 younger adults demonstrate that the experimental method can capture CBF and neurotrophic response over a time course. This methodology will provide important insight into acute exercise response and potential directions for clinical trial outcomes.ClinicalTrials.gov NCT04009629, Registered 05/07/2019.
Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense
Authors: Henderickx Jannie G. E. , Zwittink Romy D. , Renes Ingrid B. , van Lingen Richard A. , van Zoeren-Grobben Diny , Jebbink Liesbeth J. Groot , Boeren Sjef , van Elburg Ruurd M. , Knol Jan , Belzer Clara 
Published: June 2021

AbstractFunctionality of the gastrointestinal tract is essential for growth and development of newborns. Preterm infants have an immature gastrointestinal tract, which is a major challenge in neonatal care. This study aims to improve the understanding of gastrointestinal functionality and maturation during the early life of preterm infants by means of gastrointestinal enzyme activity assays and metaproteomics. In this single-center, observational study, preterm infants born between 24 and 33 weeks (n = 40) and term infants born between 37 and 42 weeks (n = 3), who were admitted to Isala (Zwolle, the Netherlands), were studied. Enzyme activity analyses identified active proteases in gastric aspirates of preterm infants. Metaproteomics revealed human milk, digestive and immunological proteins in gastric aspirates of preterm infants and feces of preterm and term infants. The fecal proteome of preterm infants was deprived of gastrointestinal barrier-related proteins during the first six postnatal weeks compared to term infants. In preterm infants, bacterial oxidative stress proteins were increased compared to term infants and higher birth weight correlated to higher relative abundance of bifidobacterial proteins in postnatal week 3 to 6. Our findings indicate that gastrointestinal and beneficial microbial proteins involved in gastrointestinal maturity are associated with gestational and postnatal age.
In search of the spectral composition of an effective light trap for the mushroom pest Lycoriella ingenua (Diptera: Sciaridae)
Authors: Kecskeméti Sándor , Geösel András , Fail József , Egri Ádám 
Published: June 2021

AbstractCertain fungus gnats, like Lycoriella ingenua are notorious pests in agriculture, especially in mushroom production. While larvae cause mainly direct crop damage, adults are vectors of several dangerous fungal pathogens. To promote the development of pesticide-free management methods, such as light trapping, we measured the spectral sensitivity of L. ingenua compound eyes with electroretinography and performed two different behavioural experiments to reveal the wavelength dependence of phototaxis in this species. The spectral sensitivity of the compound eyes is bimodal with peaks at 370 nm (UV) and 526 nm (green). Behavioural experiments showed that attraction to light as a function of wavelength depends on light intensity. In our first experiment, where the minimal photon flux (105–109 photons/cm2/s) needed for eliciting a phototactic response was determined wavelength by wavelength, phototaxis was strongest in the green spectral range (~526 nm). In the other behavioural experiment, where wavelength preference was tested under a higher but constant light intensity (~1013 photons/cm2/s), the highest attraction was elicited by UV wavelengths (398 nm). Our results suggest that both UV and green are important spectral regions for L. ingenua thus we recommend to use both UV (~370-398 nm) and green (~526 nm) for trapping these insects.
Global land cover trajectories and transitions
Authors: Radwan Taher M. , Blackburn G. Alan , Whyatt J. Duncan , Atkinson Peter M. 
Published: June 2021

AbstractGlobal land cover (LC) changes threaten sustainability and yet we lack a comprehensive understanding of the gains and losses of LC types, including the magnitudes, locations and timings of transitions. We used a novel, fine-resolution and temporally consistent satellite-derived dataset covering the entire Earth annually from 1992 to 2018 to quantify LC changes across a range of scales. At global and continental scales, the observed trajectories of change for most LC types were fairly smooth and consistent in direction through time. We show these observed trajectories in the context of error margins produced by extrapolating previously published accuracy metrics associated with the LC dataset. For many LC classes the observed changes were found to be within the error margins. However, an important exception was the increase in urban land, which was consistently larger than the error margins, and for which the LC transition was unidirectional. An advantage of analysing the global, fine spatial resolution LC time-series dataset is the ability to identify where and when LC changes have taken place on the Earth. We present LC change maps and trajectories that identify locations with high dynamism, and which pose significant sustainability challenges. We focused on forest loss and urban growth at the national scale, identifying the top 10 countries with the largest percentages of forest loss and urban growth globally. Crucially, we found that most of these ‘worst-case’ countries have stabilized their forest losses, although urban expansion was monotonic in all cases. These findings provide crucial information to support progress towards the UN’s SDGs.
A novel model of ischemia in rats with middle cerebral artery occlusion using a microcatheter and zirconia ball under fluoroscopy
Authors: Komatsu Teppei , Ohta Hiroki , Motegi Haruhiko , Hata Junichi , Terawaki Koshiro , Koizumi Makoto , Muta Kanako , Okano Hirotaka James , Iguchi Yasuyuki 
Published: June 2021

AbstractThe failure of neuroprotective treatment-related clinical trials may be partially caused by unestablished animal models. Existing animal models are less likely to provide occlusion confined to the middle cerebral artery (MCA), making transarterial intervention difficult. We aimed to develop a novel focal stroke model using a microcatheter and zirconium dioxide that is non-magnetic under fluoroscopic guidance, which can monitor MCA occlusion and can improve hemorrhagic complications. Using male Sprague Dawley rats (n = 10), a microcatheter was navigated from the caudal ventral artery to the left internal carotid artery using an X-ray fluoroscopy to establish local occlusion. All rat cerebral angiographies were successful. No rats had hemorrhagic complications. Eight (80%) rats underwent occlusion of the MCA bifurcation by zirconium dioxide. Accidentally, the left posterior cerebral artery was failure embolized in 2 rats (20%). The median operating time was 8 min. All rats of occlusion MCA revealed an incomplete hemiparesis on the right side with neurological deficit score ranging from 1 to 3 (median 1, interquartile range 1–3) at 24 h after the induction of ischemia. Moreover, 2% 2,3,5-triphenyl tetrazolium chloride staining showed that the median infarct volume (mm3) was 280 (interquartile range 267–333) 24 h after the left MCA bifurcation occlusion. We present a novel rat model for focal stroke using a microcatheter and zirconium dioxide which does not affect the MRI. The model is predictable which is well confined within the territory supplied by the MCA, and reproducibility of this model is 80%. Fluoroscopy was able to identify which the MCA occlusion and model success while creating the model. It permitted exclusion of animals with complications from the experiment.
Multipolar-sensitive engineering of magnetic dipole spontaneous emission with a dielectric nanoresonator antenna
Authors: Habil Mojtaba Karimi , Zapata–Rodríguez Carlos J. , Cuevas Mauro , Entezar Samad Roshan 
Published: June 2021

AbstractWe propose an axisymmetric silicon nanoresonator with designed tapered angle well for the extraordinary enhancement of the decay rate of magnetic dipole (MD) emitters. Due to the resonant coupling of a MD emitter and the MD mode of the subwavelength resonator, the Purcell factor (PF) can easily reach 500, which is significantly higher than the PF when using a silicon nanosphere of the same size. The PF and the resonance frequency are conveniently tuned through the resonator diameter and the taper angle of the blind hole. When supported by a metallic substrate, further enhancement ($$>10^3$$

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) of the MD spontaneous emission is triggered by an image-induced quadrupolar high-Q mode of the nanoantenna. For the sake of comparison we include a critical analysis of the canonical problem that considers a Si spherical shell. Our results might facilitate a novel strategy for promising realizations of chip-scale nanophotonic applications.
The application of principal component analysis to characterize gait and its association with falls in multiple sclerosis
Authors: Monaghan Andrew S. , Huisinga Jessie M. , Peterson Daniel S. 
Published: June 2021

AbstractPeople with multiple sclerosis (PwMS) demonstrate gait impairments that are related to falls. However, redundancy exists when reporting gait outcomes. This study aimed to develop an MS-specific model of gait and examine differences between fallers and non-fallers. 122 people with relapsing–remitting MS and 45 controls performed 3 timed up-and-go trials wearing inertial sensors. 21 gait parameters were entered into a principal component analysis (PCA). The PCA-derived gait domains were compared between MS fallers (MS-F) and MS non-fallers (MS-NF) and correlated to cognitive, clinical, and quality-of-life outcomes. Six distinct gait domains were identified: pace, rhythm, variability, asymmetry, anterior–posterior dynamic stability, and medial–lateral dynamic stability, explaining 79.15% of gait variance. PwMS exhibited a slower pace, larger variability, and increased medial–lateral trunk motion compared to controls (p < 0.05). The pace and asymmetry domains were significantly worse (i.e., slower and asymmetrical) in MS-F than MS-NF (p < 0.001 and p = 0.03, respectively). Fear of falling, cognitive performance, and functional mobility were associated with a slower gait (p < 0.05). This study identified a six-component, MS-specific gait model, demonstrating that PwMS, particularly fallers, exhibit deficits in pace and asymmetry. Findings may help reduce redundancy when reporting gait outcomes and inform interventions targeting specific gait domains.
Vertically aligned 1T-phase PtSe2 on flexible carbon cloth for efficient and stable hydrogen evolution reaction
Authors: Zhang Limin , Kong Dezhi , Zhuang Qianqian , Wang Minglang , Zhang Taiyi , Zang Jinhao , Shen Weixia , Xu Tingting , Wu Di , Tian Yongtao , Wang Ye , Li Xinjian , Huang Xiaowen 
Published: June 2021

We prepared 1T-PtSe2 films on a flexible carbon cloth through a facile yet effective approach. The optimized samples exhibit a low overpotential of 177 mV and a favorable Tafel slope of 67 mV dec−1 with good stability.
Monocyte-to-albumin ratio as a novel predictor of long-term adverse outcomes in patients after percutaneous coronary intervention
Authors: Zhang Zeng-Lei , Guo Qian-Qian , Tang Jun-Nan , Zhang Jian-Chao , Cheng Meng-Die , Song Feng-Hua , Liu Zhi-Yu , Wang Kai , Jiang Li-Zhu , Fan Lei , Yue Xiao-Ting , Bai Yan , Dai Xin-Ya , Zheng Ru-Jie , Zheng Ying-Ying , Zhang Jin-Ying 
Published: June 2021

Abstract
Background: Monocyte count and serum albumin (Alb) have been proven to be involved in the process of systemic inflammation. Therefore, we investigated the prognostic value of monocyte-to-albumin ratio (MAR) in patients who underwent percutaneous coronary intervention (PCI).
Methods: We enrolled a total of 3561 patients in the present study from January 2013 to December 2017. They were divided into two groups according to MAR cut-off value (MAR &lt; 0.014, n=2220; MAR ≥ 0.014, n=1119) as evaluated by receiver operating characteristic (ROC) curve. The average follow-up time was 37.59 ± 22.24 months.
Results: The two groups differed significantly in the incidences of all-cause mortality (ACM; P&lt;0.001), cardiac mortality (CM; P&lt;0.001), major adverse cardiovascular events (MACEs; P=0.038), and major adverse cardiovascular and cerebrovascular events (MACCEs; P=0.037). Multivariate Cox regression analyses revealed MAR as an independent prognostic factor for ACM and CM. The incidence of ACM increased by 56.5% (hazard ratio [HR] = 1.565; 95% confidence interval [CI], 1.086–2.256; P=0.016) and that of CM increased by 76.3% (HR = 1.763; 95% CI, 1.106–2.810; P=0.017) in patients in the higher-MAR group. Kaplan–Meier survival analysis suggested that patients with higher MAR tended to have an increased accumulated risk of ACM (Log-rank P&lt;0.001) and CM (Log-rank P&lt;0.001).
Conclusion: The findings of the present study suggested that MAR was a novel independent predictor of long-term mortality in patients who underwent PCI.