bluuebunny/crossref_metadata_2025_split huggingface dataset:
A novel benchmark for COVID-19 pandemic testing effectiveness enables the accurate prediction of new Intensive Care Unit admissions
Authors: Nikoloudis Dimitris , Kountouras Dimitrios , Hiona Asimina 
Published: October 2021

AbstractThe positivity rate of testing is currently used both as a benchmark of testing adequacy and for assessing the evolution of the COVID-19 pandemic. However, since the former is a prerequisite for the latter, its interpretation is often conflicting. We propose as a benchmark for COVID-19 testing effectiveness a new metric, termed ‘Severity Detection Rate’ (SDR), that represents the daily needs for new Intensive Care Unit (ICU) admissions, per 100 cases detected (t − i) days ago, per 10,000 tests performed (t − i) days ago. Based on the announced COVID-19 monitoring data in Greece from May 2020 until August 2021, we show that beyond a certain threshold of daily tests, SDR reaches a plateau of very low variability that begins to reflect testing adequacy. Due to the stabilization of SDR, it was possible to predict with great accuracy the daily needs for new ICU admissions, 12 days ahead of each testing data point, over a period of 10 months, with Pearson r = 0.98 (p = 10–197), RMSE = 7.16. We strongly believe that this metric will help guide the timely decisions of both scientists and government officials to tackle pandemic spread and prevent ICU overload by setting effective testing requirements for accurate pandemic monitoring. We propose further study of this novel metric with data from more countries to confirm the validity of the current findings.
Machine learning identification of specific changes in myeloid cell phenotype during bloodstream infections
Authors: Gosset Christian , Foguenne Jacques , Simul Mickaël , Tomsin Olivier , Ammar Hayet , Layios Nathalie , Massion Paul B. , Damas Pierre , Gothot André 
Published: October 2021

AbstractThe early identification of bacteremia is critical for ensuring appropriate treatment of nosocomial infections in intensive care unit (ICU) patients. The aim of this study was to use flow cytometric data of myeloid cells as a biomarker of bloodstream infection (BSI). An eight-color antibody panel was used to identify seven monocyte and two dendritic cell subsets. In the learning cohort, immunophenotyping was applied to (1) control subjects, (2) postoperative heart surgery patients, as a model of noninfectious inflammatory responses, and (3) blood culture-positive patients. Of the complex changes in the myeloid cell phenotype, a decrease in myeloid and plasmacytoid dendritic cell numbers, increase in CD14+CD16+ inflammatory monocyte numbers, and upregulation of neutrophils CD64 and CD123 expression were prominent in BSI patients. An extreme gradient boosting (XGBoost) algorithm called the “infection detection and ranging score” (iDAR), ranging from 0 to 100, was developed to identify infection-specific changes in 101 phenotypic variables related to neutrophils, monocytes and dendritic cells. The tenfold cross-validation achieved an area under the receiver operating characteristic (AUROC) of 0.988 (95% CI 0.985–1) for the detection of bacteremic patients. In an out-of-sample, in-house validation, iDAR achieved an AUROC of 0.85 (95% CI 0.71–0.98) in differentiating localized from bloodstream infection and 0.95 (95% CI 0.89–1) in discriminating infected from noninfected ICU patients. In conclusion, a machine learning approach was used to translate the changes in myeloid cell phenotype in response to infection into a score that could identify bacteremia with high specificity in ICU patients.
Patterns and correlates of sedentary behaviour among people with multiple sclerosis: a cross-sectional study
Authors: Fortune Jennifer , Norris Meriel , Stennett Andrea , Kilbride Cherry , Lavelle Grace , Hendrie Wendy , Victor Christina , Ryan Jennifer Mary 
Published: October 2021

AbstractHigh levels of sedentary behaviour are associated with poor health outcomes in people with multiple sclerosis (MS). Identifying modifiable correlates of sedentary behaviour for people with MS is essential to design effective intervention strategies to minimise sedentary time. This study aimed to quantify patterns and identify correlates of sedentary behaviour among adults with MS. Fatigue, self-efficacy, walking capability, the physical and psychological impact of MS, health-related quality of life, and participation and autonomy were assessed by questionnaire. Participants wore an activPAL monitor. Total (min/day), prolonged bouts (≥ 30 min) and breaks in sedentary time were calculated. Associations were examined using regression analysis adjusted for demographic and clinical confounders. Fifty-six adults with MS participated (mean ± SD age: 57.0 ± 9.25 years; 66% female). Self-efficacy for control over MS was associated with sedentary time (β = 0.16, 95% CI 0.01, 0.30). Self-efficacy in function maintenance (β = 0.02, 95% CI 0.00, 0.04), health-related quality of life (EuroQol-5D) (β = 31.60, 95% CI 7.25, 55.96), and the autonomy indoors subscale of the Impact on Participation and Autonomy Questionnaire (β = − 5.11, 95% CI − 9.74, − 0.485) were associated with breaks in sedentary time. Future studies should consider self-efficacy, health-related quality of life and participation and autonomy as potential components of interventions to reduce sedentary behaviour.
Long-term prediction of $$^{137}$$Cs in Lake Onuma on Mt. Akagi after the Fukushima accident using fractional diffusion model
Authors: Suetomi Eiichi , Hatano Yuko , Fujita Masakiyo , Okada Yukiko , Suzuki Kyuma , Watanabe Shun 
Published: October 2021

AbstractThe Fukushima Daiichi Nuclear Power Plant accident also contaminates lakes in Japan. Especially in closed lakes, there is a problem of prolonged low-level $$^{137}$$

137

Cs contamination because the activity concentration of $$^{137}$$

137

Cs declines sharply immediately after the accident, but then begins to decrease slowly. In this paper, we derived a long-term prediction formula based on the fractional diffusion model (FDM) for the temporal variation in $$^{137}$$

137

Cs activity concentrations of the water in Lake Onuma on Mt. Akagi, one of the closed lakes, and of pond smelt (Hypomesus nipponensis), a typical fish species inhabiting in the lake. The formula reproduced well the measured $$^{137}$$

137

Cs activity concentration of the lake water and pond smelt for 5.4 years after the accident. Next, we performed long-term prediction for 10,000 days using this formula and compared it with the prediction results of the two-component decay function model (TDM), which is the most common model. The results suggest that the FDM prediction will lead to a longer period of contamination with low-level $$^{137}$$

137

Cs than the TDM prediction.
Electrophysiological frequency domain analysis of driver passive fatigue under automated driving conditions
Authors: Zhang Yijing , Ma Jinfei , Zhang Chi , Chang Ruosong 
Published: October 2021

AbstractWith the continuous improvement of automated vehicles, researchers have found that automated driving is more likely to cause passive fatigue. To explore the impact of automation and scenario complexity on the passive fatigue of a driver, we collected electroencephalography (EEG), detection-response task (DRT) performance, and the subjective report scores of 48 drivers. We found that in automated driving under monotonic conditions, after 40 min, the alpha power of the driver’s EEG indicators increased significantly, the accuracy of the detection reaction task decreased, and the reaction time became slower. The receiver characteristic curve was used to calculate the critical threshold of the alpha power during passive fatigue. The determination of the threshold further clarifies the occurrence time and physiological characteristics of passive fatigue and improves the passive fatigue theory.
Diffraction limited photonic hook via scattering and diffraction of dual-dielectric structures
Authors: Pacheco-Peña Victor , Riley Joseph Arnold , Liu Cheng-Yang , Minin Oleg V. , Minin Igor V. 
Published: October 2021

AbstractPhotonic hooks have demonstrated to be great candidates for multiple applications ranging from sensing up to optical trapping. In this work, we propose a mechanism to produce such bent structured light beams by exploiting the diffraction and scattering generated by a pair of dielectric rectangles immersed in free space. It is shown how the photonic hooks are generated away from the output surface of the dielectrics by correctly engineering each individual dielectric structure to generate minimum diffraction and maximum scattering along the propagation axis. Different scenarios are studied such as dual-dielectric structures having different lateral dimensions and refractive index as well as cases when both dielectrics have the same lateral dimensions. The results are evaluated both numerically and theoretically demonstrating an excellent agreement between them. These results may open new avenues for optical trapping, focusing and sensing devices via compact and simple dual-dielectric structures.
Future heat adaptation and exposure among urban populations and why a prospering economy alone won’t save us
Authors: Krummenauer Linda , Costa Luís , Prahl Boris F. , Kropp Jürgen P. 
Published: October 2021

AbstractWhen inferring on the magnitude of future heat-related mortality due to climate change, human adaptation to heat should be accounted for. We model long-term changes in minimum mortality temperatures (MMT), a well-established metric denoting the lowest risk of heat-related mortality, as a function of climate change and socio-economic progress across 3820 cities. Depending on the combination of climate trajectories and socio-economic pathways evaluated, by 2100 the risk to human health is expected to decline in 60% to 80% of the cities against contemporary conditions. This is caused by an average global increase in MMTs driven by long-term human acclimatisation to future climatic conditions and economic development of countries. While our adaptation model suggests that negative effects on health from global warming can broadly be kept in check, the trade-offs are highly contingent to the scenario path and location-specific. For high-forcing climate scenarios (e.g. RCP8.5) the maintenance of uninterrupted high economic growth by 2100 is a hard requirement to increase MMTs and level-off the negative health effects from additional scenario-driven heat exposure. Choosing a 2 °C-compatible climate trajectory alleviates the dependence on fast growth, leaving room for a sustainable economy, and leads to higher reductions of mortality risk.
A microfluidic study of oil displacement in porous media at elevated temperature and pressure
Authors: Saadat Marzieh , Vikse Nora Birgitte , Øye Gisle , Dudek Marcin 
Published: October 2021

AbstractMicrofluidics methods offer possibilities for visual observations of oil recovery processes. Good control over test parameters also provides the opportunity to conduct tests that simulate representative reservoir conditions. This paper presents a setup and procedure development for microfluidic oil recovery tests at elevated temperature and pressure. Oil recovery factors and displacement patterns were determined in single- or two-step recovery tests using two crude oils, high salinity salt solutions and low salinity surfactant solutions. Neither the displacement pattern nor the recovery factor was significantly affected by the pressure range tested here. Increasing temperature affected the recovery factor significantly, but with opposite trends for the two tested crude oils. The difference was justified by changes in wettability alteration, due to variations in the amounts and structure of the acidic and basic oil fractions. Low salinity surfactant solutions enhanced the oil recovery for both oils.
Uplift resistance capacity of anchor piles used in marine aquaculture
Authors: Gui Fukun , Kong Jianqiao , Feng Dejun , Qu Xiaoyu , Zhu Fang , You Yang 
Published: October 2021

AbstractAnchor piles are widely used in marine aquaculture, and the safety is largely determined by the uplift resistance capacity,especially in harsh ocean environments. However, there are few practical guides to the design and installation of the anchor piles for mooring the body of marine aquaculture equipment. Laboratory experiments were conducted to investigate the effect of the initial tension angle, pile diameter, embedded depth, and pile configuration on the uplift resistance capacity of anchor piles under oblique loads. CCD camera and load cell were utilized to measure the corresponding displacement and load, respectively. The results show that increasing the initial tension angle of circular and square single piles can significantly improve the uplift resistance capacity. The failure load of the square single pile was slightly higher than that of the circular single pile. Increasing the pile diameter can effectively improve the failure load and delay the development speed of the pile top displacement. Increasing the embedded depth can effectively improve the failure load and increase the lateral displacement of the pile top. The uplift resistance capacity of the dual anchor piles was better than that of the single anchor piles. The layout configuration has little effect on the failure load, but has a large effect on the displacement development.
RETRACTED ARTICLE: Novel magnetic organic–inorganic hybrids based on aromatic polyamides and ZnFe2O4 nanoparticles with biological activity
Authors: Eivazzadeh-Keihan Reza , Ghafori Gorab Mostafa , Aghamirza Moghim Aliabadi Hooman , mahdavi Mohammad , Akbarzadeh Ali Reza , Maleki Ali , Ghafuri Hossein 
Published: October 2021

Abstract
Magnetic nanoparticles were creatively selected as stable, inexpensive, biodegradable, facile recoverable, and functionalizable supports for a variety of synthetic and natural polymers. Herein, for the first time, aromatic polyamide was synthesized on the magnetic core of zinc iron oxide (ZnFe2O4). Terephthaloyl chloride and derivations of phenylenediamine were employed as monomers in this polymerization process. The toxicity of the synthesized hybrid at the highest concentration (1000 μg/ml) is 13.65% and on the other hand, the cell viability percentage is 86.35%. So, the prepared hybrid is biocompatible and non-toxic to Hu02 cells. Also, it has antibacterial ability against gram-positive and gram-negative bacteria. Because the results show that the minimum inhibitory concentration (MIC) of the synthesized polymer for bacteria such as Staphylococcus aureus ATCC 25923, Escherichia coli ATCC 25922, and Pseudomonas aeruginosa ATCC 27853 is in the range of 500–1000 µg/ml. Moreover, the hemolytic effect of ZnFe2O4 based hybrid was below 9% at the concentration of 1000 μg/ml. Therefore, it is compatible with red blood cells.
Footwear microclimate and its effects on the microbial community of the plantar skin
Authors: Miao Te , Wang Peihua , Zhang Nan , Li Yuguo 
Published: October 2021

AbstractThe association between the footwear microclimate and microbial community on the foot plantar skin was investigated by experiments with three participants. Novel methods were developed for measuring in-shoe temperature and humidity at five footwear regions, as well as the overall ventilation rate inside the footwear. Three types of footwear were tested including casual shoes, running shoes, and perforated shoes for pairwise comparison of footwear microclimate and corresponding microbial community on the skin. The major findings are as follows: (1) footwear types make a significant difference to in-shoe temperature at the instep region with the casual shoes sustaining the warmest of all types; (2) significant differences were observed in local internal absolute humidity between footwear types, with the casual shoes sustaining the highest level of humidity at most regions; (3) the perforated shoes provided the highest ventilation rate, followed by running and casual shoes, and the faster the gait, the larger the discrepancy in ventilation rate between footwear types; (4) the casual shoes seemed to provide the most favorable internal environment for bacterial growth at the distal plantar skin; and (5) the bacterial growth at the distal plantar skin showed a positive linear correlation with the in-shoe temperature and absolute humidity, and a negative linear correlation with the ventilation rate. The ventilation rate seemed to be a more reliable indicator of the bacterial growth. Above all, we can conclude that footwear microclimate varies in footwear types, which makes contributions to the bacterial growth on the foot plantar skin.
The cyclin dependent kinase inhibitor Roscovitine prevents diet-induced metabolic disruption in obese mice
Authors: Rabhi Nabil , Desevin Kathleen , Cortez Briana Noel , Hekman Ryan , Lin Jean Z. , Emili Andrew , Farmer Stephen R. 
Published: October 2021

AbstractMost strategies to treat obesity-related disorders have involved prevention of diet-induced weight gain in lean mice. Treatment of obese individuals will require therapies that reverse the detrimental effects of excess body weight. Cyclin-dependent kinases have been shown to contribute to obesity and its adverse complications. Here, we show that roscovitine; a an orally available cyclin-dependent kinase inhibitor; given to male mice during the last six weeks of a 19-week high fat diet, reduced weight gain and prevented accompanying insulin resistance, hepatic steatosis, visceral adipose tissue (eWAT) inflammation/fibrosis as well as restored insulin secretion and enhanced whole body energy expenditure. Proteomics and phosphoproteomics analysis of eWAT demonstrated that roscovitine suppressed expression of peptides and phosphopeptides linked to inflammation and extracellular matrix proteins. It also identified 17 putative protein kinases perturbed by roscovitine, including CMGC kinases, AGC kinases and CAMK kinases. Pathway enrichment analysis showed that lipid metabolism, TCA cycle, fatty acid beta oxidation and creatine biosynthesis are enriched following roscovitine treatment. For brown adipose tissue (BAT), analysis of upstream kinases controlling the phosphoproteome revealed two major kinase groups, AGC and CMGC kinases. Among the top enriched pathways were insulin signaling, regulation of lipolysis in adipocytes, thyroid hormone signaling, thermogenesis and cAMP-PKG signaling. We conclude that roscovitine is effective at preventing prolonged diet-induced metabolic disruption and restoring mitochondrial activity in BAT and eWAT.
Insight into the interaction between the RNA helicase CGH-1 and EDC-3 and its implications
Authors: Zhang Yong , Wang Ke , Yang Kanglong , Shi Yunyu , Hong Jingjun 
Published: October 2021

AbstractPrevious studies indicated that the P-body components, CGH-1 and EDC-3 may play a crucial role in the regulation of lifespan in Caenorhabditis elegans. Homo sapiens DDX6 or Saccharomyces cerevisiae Dhh1p (CGH-1 in C. elegans) could form complexes with EDC3 (Edc3p in yeast), respectively, which is significant for translation inhibition and mRNA decay. However, it is currently unclear how CGH-1 can be recognized by EDC-3 in C. elegans. Here, we provided structural and biochemical insights into the interaction between CGH-1 and EDC-3. Combined with homology modeling, mutation, and ITC assays, we uncovered an interface between CGH-1 RecA2 domain and EDC-3 FDF-FEK. Additionally, GST-pulldown and co-localization experiments confirmed the interaction between CGH-1 and EDC-3 in vitro and in vivo. We also analyzed PATR-1-binding interface on CGH-1 RecA2 by ITC assays. Moreover, we unveiled the similarity and differences of the binding mode between EDC-3 and CAR-1 or PATR-1. Taken together, these findings provide insights into the recognition of DEAD-box protein CGH-1 by EDC-3 FDF-FEK motif, suggesting important functional implications.
Generation of scalable cancer models by combining AAV-intron-trap, CRISPR/Cas9, and inducible Cre-recombinase
Authors: Boddu Prajwal C. , Gupta Abhishek K. , Kim Jung-Sik , Neugebauer Karla M. , Waldman Todd , Pillai Manoj M. 
Published: October 2021

AbstractScalable isogenic models of cancer-associated mutations are critical to studying dysregulated gene function. Nonsynonymous mutations of splicing factors, which typically affect one allele, are common in many cancers, but paradoxically confer growth disadvantage to cell lines, making their generation and expansion challenging. Here, we combine AAV-intron trap, CRISPR/Cas9, and inducible Cre-recombinase systems to achieve >90% efficiency to introduce the oncogenic K700E mutation in SF3B1, a splicing factor commonly mutated in multiple cancers. The intron-trap design of AAV vector limits editing to one allele. CRISPR/Cas9-induced double stranded DNA breaks direct homologous recombination to the desired genomic locus. Inducible Cre-recombinase allows for the expansion of cells prior to loxp excision and expression of the mutant allele. Importantly, AAV or CRISPR/Cas9 alone results in much lower editing efficiency and the edited cells do not expand due to toxicity of SF3B1-K700E. Our approach can be readily adapted to generate scalable isogenic systems where mutant oncogenes confer a growth disadvantage.
Anionic redox induced anomalous structural transition in Ni-rich cathodes
Authors: Liu Jue , Du Zhijia , Wang Xuelong , Tan Sha , Wu Xianyang , Geng Linxiao , Song Bohang , Chien Po-Hsiu , Everett S. Michelle , Hu Enyuan 
Published: October 2021

A universal four-stage structural evolution mechanism of Ni-rich cathodes is revealed by high throughput in situ neutron diffraction. An anomalous increase of average TM-O bond distances is observed when more than ~75% Li+ are removed.
Electrical properties of outer membrane extensions from Shewanella oneidensis MR-1
Authors: Lozano Helena , Millan-Solsona Ruben , Blanco-Cabra Nuria , Fabregas Rene , Torrents Eduard , Gomila Gabriel 
Published: October 2021

Outer membrane extensions from the metal-reducing bacterium Shewanella oneidensis MR-1 show an insulating behavior in dry air environment as measured by scanning dielectric microscopy.