bluuebunny/crossref_metadata_2025_split huggingface dataset:
Highly migratory species predictive spatial modeling (PRiSM): an analytical framework for assessing the performance of spatial fisheries management
Authors: Crear Daniel P. , Curtis Tobey H. , Durkee Stephen J. , Carlson John K. 
Published: September 2021

AbstractSpatial management for highly migratory species (HMS) is difficult due to many species’ mobile habits and the dynamic nature of oceanic habitats. Current static spatial management areas for fisheries in the United States have been in place for extended periods of time with limited data collection inside the areas, making any analysis of their efficacy challenging. Spatial modeling approaches can be specifically designed to integrate species data from outside of closed areas to project species distributions inside and outside closed areas relative to the fishery. We developed HMS-PRedictive Spatial Modeling (PRiSM), which uses fishery-dependent observer data of species’ presence–absence, oceanographic covariates, and gear covariates in a generalized additive model (GAM) framework to produce fishery interaction spatial models. Species fishery interaction distributions were generated monthly within the domain of two HMS longline fisheries and used to produce a series of performance metrics for HMS closed areas. PRiSM was tested on bycatch species, including shortfin mako shark (Isurus oxyrinchus), billfish (Istiophoridae), and leatherback sea turtle (Dermochelys coriacea) in a pelagic longline fishery, and sandbar shark (Carcharhinus plumbeus), dusky shark (C. obscurus), and scalloped hammerhead shark (Sphyrna lewini) in a bottom longline fishery. Model validation procedures suggest PRiSM performed well for these species. The closed area performance metrics provided an objective and flexible framework to compare distributions between closed and open areas under recent environmental conditions. Fisheries managers can use the metrics generated by PRiSM to supplement other streams of information and guide spatial management decisions to support sustainable fisheries.
Life in the Wheat Litter: Effects of Future Climate on Microbiome and Function During the Early Phase of Decomposition
Authors: Wahdan Sara Fareed Mohamed , Hossen Shakhawat , Tanunchai Benjawan , Sansupa Chakriya , Schädler Martin , Noll Matthias , Dawoud Turki M. , Wu Yu-Ting , Buscot François , Purahong Witoon 
Published: September 2021

AbstractEven though it is widely acknowledged that litter decomposition can be impacted by climate change, the functional roles of microbes involved in the decomposition and their answer to climate change are less understood. This study used a field experimental facility settled in Central Germany to analyze the effects of ambient vs. future climate that is expected in 50–80 years on mass loss and physicochemical parameters of wheat litter in agricultural cropland at the early phase of litter decomposition process. Additionally, the effects of climate change were assessed on microbial richness, community compositions, interactions, and their functions (production of extracellular enzymes), as well as litter physicochemical factors shaping their colonization. The initial physicochemical properties of wheat litter did not change between both climate conditions; however, future climate significantly accelerated litter mass loss as compared with ambient one. Using MiSeq Illumina sequencing, we found that future climate significantly increased fungal richness and altered fungal communities over time, while bacterial communities were more resistant in wheat residues. Changes on fungal richness and/or community composition corresponded to different physicochemical factors of litter under ambient (Ca2+, and pH) and future (C/N, N, P, K+, Ca2+, pH, and moisture) climate conditions. Moreover, highly correlative interactions between richness of bacteria and fungi were detected under future climate. Furthermore, the co-occurrence networks patterns among dominant microorganisms inhabiting wheat residues were strongly distinct between future and ambient climates. Activities of microbial β-glucosidase and N-acetylglucosaminidase in wheat litter were increased over time. Such increased enzymatic activities were coupled with a significant positive correlation between microbial (both bacteria and fungi) richness and community compositions with these two enzymatic activities only under future climate. Overall, we provide evidence that future climate significantly impacted the early phase of wheat litter decomposition through direct effects on fungal communities and through indirect effects on microbial interactions as well as corresponding enzyme production.
Temporal and non-temporal contextual saliency analysis for generalized wide-area search within unmanned aerial vehicle (UAV) video
Authors: Gökstorp Simon G. E. , Breckon Toby P. 
Published: September 2021

AbstractUnmanned aerial vehicles (UAV) can be used to great effect for wide-area searches such as search and rescue operations. UAV enable search and rescue teams to cover large areas more efficiently and in less time. However, using UAV for this purpose involves the creation of large amounts of data, typically in video format, which must be analysed before any potential findings can be uncovered and actions taken. This is a slow and expensive process which can result in significant delays to the response time after a target is seen by the UAV. To solve this problem we propose a deep model architecture using a visual saliency approach to automatically analyse and detect anomalies in UAV video. Our Temporal Contextual Saliency (TeCS) approach is based on the state-of-the-art in visual saliency detection using deep Convolutional Neural Networks (CNN) and considers local and scene context, with novel additions in utilizing temporal information through a convolutional Long Short-Term Memory (LSTM) layer and modifications to the base model architecture. We additionally evaluate the impact of temporal vs non-temporal reasoning for this task. Our model achieves improved results on a benchmark dataset with the addition of temporal reasoning showing significantly improved results compared to the state-of-the-art in saliency detection.
Validation of a new objective method to assess lipid layer thickness without the need of an interferometer
Authors: García-Marqués José Vicente , Talens-Estarelles Cristian , García-Lázaro Santiago , Cerviño Alejandro 
Published: September 2021

Abstract
Purpose
This study aimed to develop and validate new metrics to objectively assess the lipid layer thickness (LLT) through the analysis of grey intensity values obtained from the Placido disk pattern reflected onto the tear film.

Methods
Ocular surface parameters were measured using Oculus Keratograph 5 M in 94 healthy volunteers (43.8 ± 26.8 years). Subjects’ LLT was subjectively classified into 4 groups using an interferometry-based grading scale. New metrics based on the intensity of the Placido disk images were calculated and compared between groups. The repeatability of the new metrics and their diagnostic ability was analysed through receiver operating characteristics (ROC) curves. The level of agreement between the new objective tool and the existing subjective classification scale was analysed by means accuracy, weighted Kappa index and F-measure.

Results
Mean pixel intensity, median pixel intensity and relative energy at 5.33 s after blinking achieved the highest performance, with a correlation with LLT between r = 0.655 and 0.674 (p < 0.001), sensitivity between 0.92 and 0.94, specificity between 0.79 and 0.81, area under the ROC curve between 0.89 and 0.91, accuracy between 0.76 and 0.77, weighted Kappa index of 0.77 and F-measure between 0.86 and 0.87.

Conclusion
The analysis of grey intensity values in videokeratography can be used as an objective tool to assess LLT. These new metrics could be included in a battery of clinical tests as an easy, repeatable, objective and accessible method to improve the detection and monitoring of dry eye disease and meibomian gland dysfunction.
Resource use and economic burden of eye injuries in Southern Finland
Authors: Sahraravand Ahmad , Haavisto Anna-Kaisa , Leivo Tiina 
Published: September 2021

AbstractObjectiveTo estimate resource use and the costs of eye injuries in 2011–2012 in the Helsinki University Eye Hospital (HUEH), which covers 1.6 million people in Southern Finland.MethodsThis population-based study consisted of all new patients (1,151) with eye injuries in one year. The data were from hospital records, internal HUEH accountancy, and prospectively from questionnaires. The costs of direct health care, transportation, and lost productivity were obtained and estimated for the follow-up period of three months. The estimated future costs were discussed.ResultsDuring the follow-up, the total cost was 2,899,000 Euros (EUR) (= EUR 1,870,300/one million population), including lost productivity (EUR 1,415,000), direct health care (EUR 1,244,000), and transportation (EUR 240,000). The resources used included 6,902 days of lost productivity, 2,436 admissions and transportations, 314 minor procedures, 313 inpatient days, 248 major surgeries, and 86 radiological images. One open globe injury was the costliest (EUR 13,420/patient), but contusions had the highest overall cost (EUR 1,019,500), due to their high occurrence and number of follow-ups.ConclusionsEye injuries cause a major burden through high costs of direct health care and lost productivity: the imminent costs were EUR 1,870,000/one million population, and the future costs were estimated to EUR 3,741,400/one million population. Prevention remains the main factor to consider for better cost-efficiency.
Syn-metamorphic sulfidation of the Gamsberg zinc deposit, South Africa
Authors: Höhn Stefan , Frimmel Hartwig E. , Price Westley 
Published: September 2021

AbstractThe Mesoproterozoic Aggeneys-Gamsberg ore district, South Africa, is one of the world´s largest sulfidic base metal concentrations and well-known as a prime example of Broken Hill-type base metal deposits, traditionally interpreted as metamorphosed SEDEX deposits. Within this district, the Gamsberg deposit stands out for its huge size and strongly Zn-dominated ore ( >14 Mt contained Zn). New electron microprobe analyses and element abundance maps of sulfides and silicates point to fluid-driven sulfidation during retrograde metamorphism. Differences in the chemistry of sulfide inclusions within zoned garnet grains reflect different degrees of interaction of sulfides with high metal/sulfur-ratio with a sulfur-rich metamorphic fluid. Independent evidence of sulfidation during retrograde metamorphism comes from graphic-textured sulfide aggregates that previously have been interpreted as quenched sulfidic melts, replacement of pyrrhotite by pyrite along micro-fractures, and sulfides in phyllic alteration zones. Limited availability of fluid under retrograde conditions caused locally different degrees of segregation of Fe-rich sphalerite into Zn-rich sphalerite and pyrite, and thus considerable heterogeneity in sphalerite chemistry. The invoked sulfur-rich metamorphic fluids would have been able to sulfidize base metal-rich zones in the whole deposit and thus camouflage a potential pre-metamorphic oxidation. These findings support the recently established hypothesis of a pre-Klondikean weathering-induced oxidation event and challenge the traditional explanation of Broken Hill-type deposits as merely metamorphosed SEDEX deposits. Instead, we suggest that the massive sulfide deposits experienced a complex history, starting with initial SEDEX-type mineralization, followed by near-surface oxidation with spatial metal separation, and then sulfidation of this oxidized ore during medium- to high-grade metamorphism.
How Many Classes and Students Should Ideally be Sampled When Assessing the Role of Classroom Climate via Student Ratings on a Limited Budget? An Optimal Design Perspective
Authors: Zitzmann Steffen , Wagner Wolfgang , Hecht Martin , Helm Christoph , Fischer Christian , Bardach Lisa , Göllner Richard 
Published: September 2021

AbstractA central question in educational research is how classroom climate variables, such as teaching quality, goal structures, or interpersonal teacher behavior, are related to critical student outcomes, such as students’ achievement and motivation. Student ratings are frequently used to measure classroom climate. When using student ratings to assess classroom climate, researchers first ask students to rate classroom climate characteristics and then aggregate the ratings on the class level. Multilevel latent variable modeling is then used to determine whether class-mean ratings of classroom climate are predictive of student outcomes and to correct for unreliability so that the relations can be estimated without bias. In this article, we adopt an optimal design perspective on this specific strategy. Specifically, after briefly recapping a prominent model in climate research, we show and explain (a) how statistical power can be maximized by choosing optimal numbers of classes and students per class given a fixed budget for conducting a study and (b) how the budget required to achieve a prespecified level of power can be minimized. Moreover, we present an example from research on teaching quality to illustrate the procedures and to provide guidance to researchers who are interested in studying the role of classroom climate. Also, we present a Shiny App that can be used to help find optimal designs for classroom climate studies. The app can be accessed at https://psychtools.shinyapps.io/optimalDesignsClassroomClimate
Infection with intracellular parasite Amoeboaphelidium protococcarum induces shifts in associated bacterial communities in microalgae cultures
Authors: Höger Anna-Lena , Griehl Carola , Noll Matthias 
Published: September 2021

AbstractIn recent years microalgae products have developed increasing market demand, but sustainable industrial production is still challenged by biological stability of large-scale production plants. Yet the relationships between algal hosts, associated microbiomes, and contaminants in photobioreactors remains widely understudied. The aim of this study was to investigate the temporal development of microbiomes of four freshwater microalgae species Scenedesmus vacuolatus, Desmodesmus quadricauda, Chlorella sorokiniana, and Botryococcus braunii, in presence and absence of the zoosporic parasite Amoeboaphelidium protococcarum. To compare the effects of sterile and nonsterile culture conditions, infection experiments were performed in sterile laboratory (sterile) and simulated industrial conditions (open). Algal growth (dry weight, optical density, and nutrient consumption) was observed for 21 days, and samples of the associated microbiome were collected for bacterial 16S rRNA gene Illumina MiSeq sequencing. Infection patterns of A. protococcarum were algae species-specific, irrespectively of culture conditions. Bacterial community analysis demonstrated distinct and stable bacterial communities for each algae species, which were mostly dominated by α- and γ-Proteobacteria. Upon aphelid parasitosis, bacterial diversity increased, and community compositions diverged algae-specific over time. Moreover, bacterial functional traits shifted to detoxification, degradation, and cellulolysis once algae were infected. This study provides a first insight into the close connection between algae, associated bacterial microbiomes and appearing contaminants in photobioreactor systems.
Evaluation of Ti/Al alloy coated with biogenic hydroxyapatite as an implant device in dogs’ femur bones
Authors: Mahmoud E. M. , Sayed M. , Awaad M. , El-Zomor S. T. , Blum M. , Killinger A. , Gadow R. , Naga S. M. 
Published: September 2021

AbstractThe main target of the present research was a full assessment of the toxicity effects and biocompatibility of a Ti/Al-alloy device coated with biogenic hydroxyapatite (bHA) when implanted in dogs in comparison with those of an uncoated Ti/Al-alloy device. The coating of the alloy was carried out using controlled high-velocity suspension flame spray (HVSFS) technique. Both coated and uncoated devices were implanted in dogs’ femur bones for different time periods (45 days and 90 days). Bone-formation ability and healing were followed up, and blood analysis was performed, at Time zero (immediately post surgery), and then at 3 days, 45 days, and 90 days post surgery. Bone mineral density checks, radiological scans of the femur bone, and histological analysis were also conducted. The in-vivo study results proved that implantation of a device made from bHA-coated Ti/Al alloy in dogs’ femur bones is completely safe. This is due to the high osteoconductivity of the coated alloy, which enables the formation of new bone and a full connection between new and original bone material. At 90 days post surgery, the coated alloy had been completely digested within the original bone; thus, it appeared as a part of the femur bone and not as a foreign body. Both the scanning electron microscopy with energy-dispersive X-ray and histology analysis findings affirmed the results. Furthermore, the blood tests indicated no toxicity effects during the 90 days of implantation.
Stuck on repeat: Why do we continue to ruminate?
Authors: Russell Jodie Louise 
Published: September 2021

AbstractAn oft misattributed piece of folk-wisdom goes: “Insanity is doing the same thing, over and over again, but expecting different results.” In many cases, we don’t just do things repeatedly but think over the same topics repeatedly. People who ruminate are not often diagnosed as insane—most of us ruminate at some point in our lives—but it is a common behaviour underlying both depression and anxiety (Nolen-Hoeksema in J Abnorm Psychol 109(3):504, 2000). If rumination is something we all do at some time, what is it about ruminative thought that makes it ‘sticky’ and difficult to stop for the worst sufferers? In order to answer this question, I will present a plausible account of how ruminative behaviour becomes entrenched to the point where sufferers of anxiety and depression simply cannot make meaning from the world except in terms of the kinds of behaviours, actions and thoughts they have become reliant on. I develop my account from Barrett’s theory of constructed emotion (2006, 2011, 2014) using the work of Merleau-Ponty (Phenomenology of perception, Taylor and Francis Group. (Online), ProQuest Ebook Central, 2012. https://ebookcentral.proquest.com/lib/ed/detail.action?docID=1433878. Accessed 29 Dec 2020) in order to bridge the gap between the explicit thought we experience—an important part of the lived experience of rumination. To conclude, I will apply my account to Wu and Dunning’s (Rev General Psychol 22(1):25–35, 2018; Hypocognitive mind: How lack of conceptual knowledge confines what people see and remember, 2019. 10.31234/osf.io/29ryz) theory of hypocognition to further illuminate the particular cognitive qualities that can be experienced by ruminators, i.e. a prohibited access to particular emotion concepts.
Relationship Between Microbial Growth and Hydraulic Properties at the Sub-Pore Scale
Authors: Hassannayebi Neda , Jammernegg Boris , Schritter Johanna , Arnold Pit , Enzmann Frieder , Kersten Michael , Loibner Andreas P. , Fernø Martin , Ott Holger 
Published: September 2021

AbstractAccumulation of microbial biomass and its influence on porous media flow were investigated under saturated flow conditions. Microfluidic experiments were performed with model organisms, and their accumulation was observed in the pore space and on the sub-pore scale. Time-lapse optical imaging revealed different modes of biomass accumulation through primary colonization, secondary growth, and filtration events, showing the formation of preferential flow pathways in the flooding domain as result of the increasing interstitial velocity. Navier–Stokes–Brinkmann flow simulations were performed on the segmented images—a digital-twin approach—considering locally accumulated biomass as impermeable or permeable based on optical biomass density. By comparing simulation results and the experimental responses, it was shown that accumulated biomass can be considered as a permeable medium. The average intra-biomass permeability was determined to be 500 ± 200 mD, which is more than a factor of 10 larger than previously assumed in modeling studies. These findings have substantial consequences: (1) a remaining interstitial permeability, as a result of the observed channel formation and the intra-biomass permeability, and (2) a potential advective nutrient supply, which can be considered more efficient than a purely diffusive supply. The second point may lead to higher metabolic activity and substrate conversion rates which is of particular interest for geobiotechnological applications.
Key performance indicators of cooperative planning processes: Case study results from German sport science and physical activity promotion projects
Authors: Sommer R. , Linder S. , Ziemainz H. , Gelius P. 
Published: September 2021

AbstractObjectiveThe aim of this study was to map the phases and individual steps of the cooperative planning process, a specific participatory approach frequently used in German sports and physical activity promotion, and to explore facilitators, barriers, and challenges experienced by those leading its implementation in selected projects.BackgroundMore than half of the global population is not physically active enough. Therefore, the demand for more effective physical activity programs is growing. Participatory-based interventions, using the cooperative planning process, offer the potential to plan new programs that match population group and setting characteristics. This approach was extensively applied in German sports and physical activity fields, serving as a mechanism to develop and implement specific measures to change the population’s behaviour. We analysed four German empirical projects promoting sports and physical activity to identify how the approach was adapted to each project, which phases were considered, and which key performance indicators enhanced (facilitators), exacerbated (barriers), or challenged the process.MethodsThis study used a mixed-methods approach, including a systematic analysis of documents (n = 10) and in-depth, semi-structured interviews (n = 4) with the empirical projects’ scientific members.ResultsThe cooperative planning process was shaped across its phases by several facilitators, challenges, and barriers. Diverse assessment procedures and recruitment tools can facilitate preparation of the process, while moderation requires particular attention during the development phase. Identifying a champion in the transition subphase and providing ongoing scientific counselling can assure the implementation of an action plan with tailored measures for sports and physical activity promotion.ConclusionsThis study contributes to a better understanding of the complexity of the cooperative planning approach and, therefore, flexibility in sports and physical activity promotion projects. Many preparation actions, several challenges in the planning process, and a critical transition in implementation responsibilities should be considered by future projects intending to adopt the approach.