bluuebunny/crossref_metadata_2025_split huggingface dataset:
Reversal of carbonate-silicate cation exchange in cold slabs in Earth’s lower mantle
Authors: Lv Mingda , Dorfman Susannah M. , Badro James , Borensztajn Stephan , Greenberg Eran , Prakapenka Vitali B. 
Published: March 2021

AbstractThe stable forms of carbon in Earth’s deep interior control storage and fluxes of carbon through the planet over geologic time, impacting the surface climate as well as carrying records of geologic processes in the form of diamond inclusions. However, current estimates of the distribution of carbon in Earth’s mantle are uncertain, due in part to limited understanding of the fate of carbonates through subduction, the main mechanism that transports carbon from Earth’s surface to its interior. Oxidized carbon carried by subduction has been found to reside in MgCO3throughout much of the mantle. Experiments in this study demonstrate that at deep mantle conditions MgCO3reacts with silicates to form CaCO3. In combination with previous work indicating that CaCO3is more stable than MgCO3under reducing conditions of Earth’s lowermost mantle, these observations allow us to predict that the signature of surface carbon reaching Earth’s lowermost mantle may include CaCO3.
α-Catenin levels determine direction of YAP/TAZ response to autophagy perturbation
Authors: Pavel Mariana , Park So Jung , Frake Rebecca A. , Son Sung Min , Manni Marco M. , Bento Carla F. , Renna Maurizio , Ricketts Thomas , Menzies Fiona M. , Tanasa Radu , Rubinsztein David C. 
Published: March 2021

AbstractThe factors regulating cellular identity are critical for understanding the transition from health to disease and responses to therapies. Recent literature suggests that autophagy compromise may cause opposite effects in different contexts by either activating or inhibiting YAP/TAZ co-transcriptional regulators of the Hippo pathway via unrelated mechanisms. Here, we confirm that autophagy perturbation in different cell types can cause opposite responses in growth-promoting oncogenic YAP/TAZ transcriptional signalling. These apparently contradictory responses can be resolved by a feedback loop where autophagy negatively regulates the levels of α-catenins, LC3-interacting proteins that inhibit YAP/TAZ, which, in turn, positively regulate autophagy. High basal levels of α-catenins enable autophagy induction to positively regulate YAP/TAZ, while low α-catenins cause YAP/TAZ activation upon autophagy inhibition. These data reveal how feedback loops enable post-transcriptional determination of cell identity and how levels of a single intermediary protein can dictate the direction of response to external or internal perturbations.
Mechanical stress determines the configuration of TGFβ activation in articular cartilage
Authors: Zhen Gehua , Guo Qiaoyue , Li Yusheng , Wu Chuanlong , Zhu Shouan , Wang Ruomei , Guo X. Edward , Kim Byoung Choul , Huang Jessie , Hu Yizhong , Dan Yang , Wan Mei , Ha Taekjip , An Steven , Cao Xu 
Published: March 2021

AbstractOur incomplete understanding of osteoarthritis (OA) pathogenesis has significantly hindered the development of disease-modifying therapy. The functional relationship between subchondral bone (SB) and articular cartilage (AC) is unclear. Here, we found that the changes of SB architecture altered the distribution of mechanical stress on AC. Importantly, the latter is well aligned with the pattern of transforming growth factor beta (TGFβ) activity in AC, which is essential in the regulation of AC homeostasis. Specifically, TGFβ activity is concentrated in the areas of AC with high mechanical stress. A high level of TGFβ disrupts the cartilage homeostasis and impairs the metabolic activity of chondrocytes. Mechanical stress stimulates talin-centered cytoskeletal reorganization and the consequent increase of cell contractile forces and cell stiffness of chondrocytes, which triggers αV integrin–mediated TGFβ activation. Knockout of αV integrin in chondrocytes reversed the alteration of TGFβ activation and subsequent metabolic abnormalities in AC and attenuated cartilage degeneration in an OA mouse model. Thus, SB structure determines the patterns of mechanical stress and the configuration of TGFβ activation in AC, which subsequently regulates chondrocyte metabolism and AC homeostasis.
Acetylation of KLF5 maintains EMT and tumorigenicity to cause chemoresistant bone metastasis in prostate cancer
Authors: Zhang Baotong , Li Yixiang , Wu Qiao , Xie Lin , Barwick Benjamin , Fu Changying , Li Xin , Wu Daqing , Xia Siyuan , Chen Jing , Qian Wei Ping , Yang Lily , Osunkoya Adeboye O. , Boise Lawrence , Vertino Paula M. , Zhao Yichao , Li Menglin , Chen Hsiao-Rong , Kowalski Jeanne , Kucuk Omer , Zhou Wei , Dong Jin-Tang 
Published: March 2021

AbstractAdvanced prostate cancer (PCa) often develops bone metastasis, for which therapies are very limited and the underlying mechanisms are poorly understood. We report that bone-borne TGF-β induces the acetylation of transcription factor KLF5 in PCa bone metastases, and acetylated KLF5 (Ac-KLF5) causes osteoclastogenesis and bone metastatic lesions by activating CXCR4, which leads to IL-11 secretion, and stimulating SHH/IL-6 paracrine signaling. While essential for maintaining the mesenchymal phenotype and tumorigenicity, Ac-KLF5 also causes resistance to docetaxel in tumors and bone metastases, which is overcome by targeting CXCR4 with FDA-approved plerixafor. Establishing a mechanism for bone metastasis and chemoresistance in PCa, these findings provide a rationale for treating chemoresistant bone metastasis of PCa with inhibitors of Ac-KLF5/CXCR4 signaling.
Revealing 3D structure of gluten in wheat dough by optical clearing imaging
Authors: Ogawa Takenobu , Matsumura Yasuki 
Published: March 2021

AbstractGluten, which makes up 85% of endosperm wheat protein, is considered a crucial quality determinant of wheat-based food products. During wheat dough manufacture, the molecular packing of gluten causes formation of large structures that exceed the millimetre scale. However, due to lack of imaging techniques for complex systems composed of giant macromolecules, the entire gluten structure remains unknown. Here, we develop an optical clearing reagent (termed SoROCS) that makes wheat-based products transparent. Combined with two-photon microscopy, we image the three-dimensional (3D) structure of gluten at the size in the millimetre scale and at submicron resolution. Further, we demonstrate how the 3D structure of gluten dramatically changes from a honeycomb-shaped network to sparse large clumps in wheat noodles, depending on the salt added during dough making, thereby reducing stress when compressing the noodle. Moreover, we show that SoROCS can be used for noodle imaging using confocal laser scanning microscopy.
Towards optimising experimental quantification of persistent pain in Parkinson’s disease using psychophysical testing
Authors: Bannister Kirsty , Smith Rory V. , Wilkins Patrick , Cummins Tatum M. 
Published: March 2021

AbstractPeople with Parkinson’s disease (PD) may live for multiple decades after diagnosis. Ensuring that effective healthcare provision is received across the range of symptoms experienced is vital to the individual’s wellbeing and quality of life. As well as the hallmark motor symptoms, PD patients may also suffer from non-motor symptoms including persistent pain. This type of pain (lasting more than 3 months) is inconsistently described and poorly understood, resulting in limited treatment options. Evidence-based pain remedies are coming to the fore but therapeutic strategies that offer an improved analgesic profile remain an unmet clinical need. Since the ability to establish a link between the neurodegenerative changes that underlie PD and those that underlie maladaptive pain processing leading to persistent pain could illuminate mechanisms or risk factors of disease initiation, progression and maintenance, we evaluated the latest research literature seeking to identify causal factors underlying persistent pain in PD through experimental quantification. The majority of previous studies aimed to identify neurobiological alterations that could provide a biomarker for pain/pain phenotype, in PD cohorts. However heterogeneity of patient cohorts, result outcomes and methodology between human psychophysics studies overwhelmingly leads to inconclusive and equivocal evidence. Here we discuss refinement of pain-PD paradigms in order that future studies may enhance confidence in the validity of observed effect sizes while also aiding comparability through standardisation. Encouragingly, as the field moves towards cross-study comparison of data in order to more reliably reveal mechanisms underlying dysfunctional pain processing, the potential for better-targeted treatment and management is high.
Strain derivative of thermoelectric properties as a sensitive probe for nematicity
Authors: Caglieris F. , Wuttke C. , Hong X. C. , Sykora S. , Kappenberger R. , Aswartham S. , Wurmehl S. , Büchner B. , Hess C. 
Published: March 2021

AbstractThe nematic instability is an undebatable ingredient of the physics of iron-based superconductors. Yet, its origin remains enigmatic as it involves a fermiology with an intricate interplay of lattice-, orbital-, and spin degrees of freedom. It is well known that thermoelectric transport is an excellent probe for revealing even subtle signatures of instabilities and pertinent fluctuations. In this paper, we report a strong response of the thermoelectric transport properties of two underdoped 1111 iron-based superconductors to a vanishingly small strain. By introducing the strain derivative of the Seebeck and the Nernst coefficients, we provide a description of the nematic order parameter, proving the existence of an anisotropic Peltier-tensor beside an anisotropic conductivity tensor. Our measurements reveal that the transport nematic phenomenology is the result of the combined effect of both an anisotropic scattering time and Fermi surface distortions, pointing out that in a realistic description, abreast of the spin fluctuations also the orbital character is a fundamental ingredient. In addition, we show that nematic fluctuations universally relax in a Curie–Weiss fashion above TS in all the elasto-transport measurements and we provide evidences that nematicity must be band selective.
Prognostic value of neutrophil to lymphocyte ratio in acute ischemic stroke after reperfusion therapy
Authors: Bi Ying , Shen Jing , Chen Sheng-Cai , Chen Ji-Xiang , Xia Yuan-Peng 
Published: March 2021

AbstractThe purpose of this study was to investigate whether baseline neutrophil to lymphocyte ratio (NLR) was an independent predictor for early symptomatic intracranial hemorrhage (sICH), poor functional outcome and mortality at 3 months after reperfusion therapy in acute ischemic stroke (AIS) patients. Using PubMed and EMBASE, we searched for literature published before January 19th, 2019. Two reviewers independently confirmed each study’s eligibility, assessed risk of bias, and extracted data. One reviewer combined studies using random effects meta-analysis. 9 studies with 3651 patients were pooled in the meta-analysis. Overall, baseline NLR levels were greater in patients with poor outcome. The standardized mean difference (SMD) in the NLR levels between patients with poor functional outcome (mRS > 2) and good functional outcome (mRS ≤ 2) was 0.54 units (95% credible interval [CI] [0.38, 0.70]). Heterogeneity test showed that there were significant differences between individual studies (p = 0.02; I2 = 72.8%). The NLR levels were associated with sICH in four included studies (n = 2003, SMD = 0.78, 95% [CI] [0.18, 1.38], I2 = 73.9%). Higher NLR levels were positively correlated with 3-month mortality (n = 1389, ES = 1.71, 95% CI [1.01,2.42], p < 0.01, I2 = 0%) when data were used as categorical variables. Our meta-analysis suggests that increased NLR levels are positively associated with greater risk of sICH, 3-month poor functional outcome and 3-month mortality in AIS patients undergoing reperfusion treatments. Although there are some deficits in this study, it may be feasible to predict the prognosis of reperfusion therapy in AIS patients with NLR levels.
Isotope separation of 176Lu a precursor to 177Lu medical isotope using broadband lasers
Authors: Suryanarayana M. V. 
Published: March 2021

AbstractA new photoionization scheme accessible by Rhodamine dye lasers is proposed for the isotope separation of 176Lu.$$5d6s^{2}\,{^{2}D_{{3/2}}} (0.0\, {\text{cm}}^{{ - 1}} )\mathop{\longrightarrow}\limits^{{573.8130\, {\text{nm}}}}5d6s6p\,{^{4}F_{{3/2}}^{o}} \left( {17427.28\, {\text{cm}}^{{ - 1}} } \right)\mathop{\longrightarrow}\limits^{{560.3114\, {\text{nm}}}}$$

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$$6s{6p}^{2}\,{^{4}{P}_{5/2}}\left(35274.5 \,{\text{cm}}^{-1}\right){\to } Autoionization\, State {\to }{Lu}^{+}$$

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Optimum conditions for the laser isotope separation have been theoretically computed and compared with the previously reported work. The enrichment of ~ 63% can be obtained with > 22 mg/h production rate even when broadband lasers with bandwidth of 500 MHz are employed for the two step excitation. The simplified system requirements for the photoionization scheme combined with a high production rate of 176Lu than previously reported is expected to reduce the global shortage of 176Lu isotope for medical applications.
Adaptive constrained constructive optimisation for complex vascularisation processes
Authors: Talou Gonzalo Daniel Maso , Safaei Soroush , Hunter Peter John , Blanco Pablo Javier 
Published: March 2021

AbstractMimicking angiogenetic processes in vascular territories acquires importance in the analysis of the multi-scale circulatory cascade and the coupling between blood flow and cell function. The present work extends, in several aspects, the Constrained Constructive Optimisation (CCO) algorithm to tackle complex automatic vascularisation tasks. The main extensions are based on the integration of adaptive optimisation criteria and multi-staged space-filling strategies which enhance the modelling capabilities of CCO for specific vascular architectures. Moreover, this vascular outgrowth can be performed either from scratch or from an existing network of vessels. Hence, the vascular territory is defined as a partition of vascular, avascular and carriage domains (the last one contains vessels but not terminals) allowing one to model complex vascular domains. In turn, the multi-staged space-filling approach allows one to delineate a sequence of biologically-inspired stages during the vascularisation process by exploiting different constraints, optimisation strategies and domain partitions stage by stage, improving the consistency with the architectural hierarchy observed in anatomical structures. With these features, the aDaptive CCO (DCCO) algorithm proposed here aims at improving the modelled network anatomy. The capabilities of the DCCO algorithm are assessed with a number of anatomically realistic scenarios.
Generalizability of deep learning models for dental image analysis
Authors: Krois Joachim , Garcia Cantu Anselmo , Chaurasia Akhilanand , Patil Ranjitkumar , Chaudhari Prabhat Kumar , Gaudin Robert , Gehrung Sascha , Schwendicke Falk 
Published: March 2021

AbstractWe assessed the generalizability of deep learning models and how to improve it. Our exemplary use-case was the detection of apical lesions on panoramic radiographs. We employed two datasets of panoramic radiographs from two centers, one in Germany (Charité, Berlin, n = 650) and one in India (KGMU, Lucknow, n = 650): First, U-Net type models were trained on images from Charité (n = 500) and assessed on test sets from Charité and KGMU (each n = 150). Second, the relevance of image characteristics was explored using pixel-value transformations, aligning the image characteristics in the datasets. Third, cross-center training effects on generalizability were evaluated by stepwise replacing Charite with KGMU images. Last, we assessed the impact of the dental status (presence of root-canal fillings or restorations). Models trained only on Charité images showed a (mean ± SD) F1-score of 54.1 ± 0.8% on Charité and 32.7 ± 0.8% on KGMU data (p < 0.001/t-test). Alignment of image data characteristics between the centers did not improve generalizability. However, by gradually increasing the fraction of KGMU images in the training set (from 0 to 100%) the F1-score on KGMU images improved (46.1 ± 0.9%) at a moderate decrease on Charité images (50.9 ± 0.9%, p < 0.01). Model performance was good on KGMU images showing root-canal fillings and/or restorations, but much lower on KGMU images without root-canal fillings and/or restorations. Our deep learning models were not generalizable across centers. Cross-center training improved generalizability. Noteworthy, the dental status, but not image characteristics were relevant. Understanding the reasons behind limits in generalizability helps to mitigate generalizability problems.
Ant social foraging strategies along a Neotropical gradient of urbanization
Authors: Dáttilo Wesley , MacGregor-Fors Ian 
Published: March 2021

AbstractDuring the last decades, urbanization has been highlighted as one of the main causes of biodiversity loss worldwide. Among organisms commonly associated with urban environments, ants occupy urbanized green areas and can live both inside and around human settlements. However, despite the increasing number of studies on the ecological dynamics of ant species developed mainly in temperate urban ecosystems, there is still little knowledge about the behavioral strategies that allow ant species to live and even thrive within cities. In this study, we evaluated the role of urbanization in shaping ant communities, including their social foraging, considering built cover as a gradually changing variable that describes an urban gradient. Specifically, we assessed whether species richness, composition, and the proportion of exotic ant species are related to an urban gradient in a medium-sized Neotropical city immersed in a cloud forest context in Mexico. Moreover, we evaluated the social foraging strategies that could promote ant species coexistence in an urban environment. In general, and contrary to our hypothesis, we found no evidence that the built cover gradient affected the richness, composition, or proportion of exotic ant species foraging on food resources, indicating a filtering and simplification of ant communities given by urbanization. Moreover, we show for the first time that urban ant species exhibited a “discovery-defense strategy”, whereby the ant species with the greatest capacity to discover new food resources were those that showed the greatest ability to monopolize it after 120 min of observation, regardless of the type of resource (i.e., tuna or honey bait). Our findings have a direct impact on the knowledge about how urbanization shapes ant communities and behavior, by showing the foraging strategies of ant species that feed on similar food resources present that allows them to coexist in urban environments.
Practical aspects of the application of helical tomotherapy for craniospinal irradiation
Authors: Lee Joongyo , Kim Euidam , Kim Nalee , Byun Hwa Kyung , Suh Chang-Ok , Chung Yoonsun , Yoon Hong In 
Published: March 2021

AbstractWe investigated the practical aspects of the application of craniospinal irradiation using helical tomotherapy (HT-CSI) by evaluating interfractional setup errors and intrafractional movement during each treatment in 83 patients undergoing HT-CSI between January 2014 and December 2018. Interfractional setup errors in each axis (mediolateral; ML, craniocaudal; CC, and anteroposterior; AP) were assessed as differences between pre-treatment megavoltage computed tomography (MVCT) images scanned (zygomatic arch to the C4 spine) and planning CT images. Intrafractional movements were evaluated as the difference between pre-treatment and post-treatment MVCT (T12–L4 spine) images at each fraction. Median interfractional setup error was acceptable in every axis (ML: 1.6 mm, CC: 1.9 mm, AP: 3.1 mm). Seven patients (8.4%) experienced significant intrafractional displacement from 1 to 10 fractions (0.34% for ML, 0.74% for CC, 1.21% for AP). Weight loss grade 1+ during treatment (p = 0.016) was an independent risk factor for significant intrafractional displacement. The risk factor for significant intrafractional movement in pediatric patients was weight loss grade 1+ (p = 0.020), while there was no factor in adults. HT-CSI could be a feasible treatment modality with acceptable setup verification. Inter- and intrafractional errors were acceptable; paying attention to weight loss during treatment is necessary, especially in pediatric patients.
Predicting how surface texture and shape combine in the human visual system to direct attention
Authors: Xu Zoe Jing , Lleras Alejandro , Buetti Simona 
Published: March 2021

AbstractObjects differ from one another along a multitude of visual features. The more distinct an object is from other objects in its surroundings, the easier it is to find it. However, it is still unknown how this distinctiveness advantage emerges in human vision. Here, we studied how visual distinctiveness signals along two feature dimensions—shape and surface texture—combine to determine the overall distinctiveness of an object in the scene. Distinctiveness scores between a target object and distractors were measured separately for shape and texture using a search task. These scores were then used to predict search times when a target differed from distractors along both shape and texture. Model comparison showed that the overall object distinctiveness was best predicted when shape and texture combined using a Euclidian metric, confirming the brain is computing independent distinctiveness scores for shape and texture and combining them to direct attention.
Effect of memantine, an anti-Alzheimer’s drug, on rodent microglial cells in vitro
Authors: Murakawa-Hirachi Toru , Mizoguchi Yoshito , Ohgidani Masahiro , Haraguchi Yoshinori , Monji Akira 
Published: March 2021

AbstractThe pathophysiology of Alzheimer’s disease (AD) is related to neuroinflammatory responses mediated by microglia. Memantine, an antagonist of N-methyl-d-aspartate (NMDA) receptors used as an anti-Alzheimer’s drug, protects from neuronal death accompanied by suppression of proliferation and activation of microglial cells in animal models of AD. However, it remains to be tested whether memantine can directly affect microglial cell function. In this study, we examined whether pretreatment with memantine affects intracellular NO and Ca2+ mobilization using DAF-2 and Fura-2 imaging, respectively, and tested the effects of memantine on phagocytic activity by human β-Amyloid (1–42) phagocytosis assay in rodent microglial cells. Pretreatment with memantine did not affect production of NO or intracellular Ca2+ elevation induced by TNF in rodent microglial cells. Pretreatment with memantine also did not affect the mRNA expression of pro-inflammatory (TNF, IL-1β, IL-6 and CD45) or anti-inflammatory (IL-10, TGF-β and arginase) phenotypes in rodent microglial cells. In addition, pretreatment with memantine did not affect the amount of human β-Amyloid (1–42) phagocytosed by rodent microglial cells. Moreover, we observed that pretreatment with memantine did not affect 11 major proteins, which mainly function in the phagocytosis and degradation of β-Amyloid (1–42), including TREM2, DAP12 and neprilysin in rodent microglial cells. To the best of our knowledge, this is the first report to suggest that memantine does not directly modulate intracellular NO and Ca2+ mobilization or phagocytic activity in rodent microglial cells. Considering the neuroinflammation hypothesis of AD, the results might be important to understand the effect of memantine in the brain.