bluuebunny/crossref_metadata_2025_split huggingface dataset:
Chasing the Anchor: A Systematic Review and Meta-Analysis of Perceptual Anchoring Deficits in Developmental Dyslexia
Authors: Shulver Kurt D. , Badcock Nicholas A. 
Published: July 2021

PurposeWe report the results of a systematic review and meta-analysis investigating the relationship between perceptual anchoring and dyslexia. Our goal was to assess the direction and degree of the effect between perceptual anchoring and reading ability in typical and atypical (i.e., dyslexic) readers.MethodWe performed a literature search of experiments explicitly assessing perceptual anchoring and reading ability using PsycInfo (Ovid, 1860–2020), MEDLINE (Ovid, 1860–2019), EMBASE (Ovid, 1883–2019), and PubMed for all available years up to June (2020). Our eligibility criteria consisted of English language articles, and, at minimum, one experimental group identified as dyslexic—either by reading assessment at the time or by previous diagnosis. We assessed for risk of bias using an adapted version of the Newcastle–Ottawa Scale. Eight studies were included in this review and meta-analysis (n= 422 participants).ResultsThe overall effect was negative, moderate, and statistically significant;g= −0.70, 95% confidence interval [−1.10, −0.29]: a negative effect size indicating less perceptual anchoring in dyslexic versus nondyslexic groups. Visual assessment of funnel plot and Egger's test suggest minimal bias but with significant heterogeneity; Q (7) = 17.03, prediction interval [−1.79, 0.40].ConclusionsOf the included studies, we find evidence for a moderate perceptual anchoring deficit in individuals with dyslexia. The primary limitation of the current review is the small number of included studies. The variability of effect sizes appears consistent with the inherent variability within subtypes of dyslexia.
Anti‐collision algorithm based on slotted random regressive‐style binary search tree in RFID technology
Authors: Ai Yibo , Bai Tianrui , Xu Yue , Zhang Weidong 
Published: July 2021

AbstractIn recent years, the rapid development of the Internet of Things (IoT) technology has provided a strong technical support for the technological transformation of the logistics industry. The informatization development of logistics industry increasingly relies on the Internet of Things technology represented by Radio Frequency Identification (RFID) technology. These technologies lead the whole business process to optimize the business process in the direction of accurate, efficient and real‐time. In order to solve the problem that the reader cannot identify the label information correctly due to the phenomenon of data collision in the application of RFID technology, this paper proposes an anti‐collision algorithm based on Slotted Random Regressive‐style Binary Search Tree (SR‐RBST). Based on Slotted ALOHA (SA) the method proposed in this paper uses the Regressive‐style Binary Search Tree (RBST) to process the RFID labels in the collision time slot. With the same size of tags, the SR‐RBST algorithm needs less total time slot and has higher efficiency and shorter identification time, while with the increase of the number of tags, the SR‐RBST anti‐collision algorithm has more obvious advantages. The SR‐RBST algorithm effectively improves the time slot utilization efficiency of the system.
Power maximising control of a heaving point absorber wave energy converter
Authors: Gu Yifeng , Ding Boyin , Sergiienko Nataliia Y. , Cazzolato Benjamin S. 
Published: July 2021

AbstractControl systems play a critical role in improving the economic viability of wave energy converters (WEC). This paper presents a framework for a causal power‐maximising feedback controller inspired by Phi method. Quadratic damper control and PID control are combined to collectively achieve the optimal power absorption conditions for the peak wave periods, which results in a nonlinear controller being suboptimal in irregular waves. The proposed controller is tested on a fully submerged heaving spherical point absorber in regular and irregular wave conditions in time domain. The tuning of the PID gains are investigated in frequency‐domain from a stability and control bandwidth perspective. The modelled WEC dynamics includes linear hydrodynamic forces (excitation and radiation) and the nonlinear viscous drag force. The main benefits of the proposed controller are (i) it does not require any time‐consuming optimisation either online or offline; (ii) has a wider bandwidth and better power absorption performance as compared to the conventional spring‐damper (PI) controller; and (iii) easy to implement in practice like standard PID control.
Provider Preferences for Patient-Generated Health Data Displays in Pediatric Asthma: A Participatory Design Approach
Authors: Tiase Victoria L. , Wawrzynski Sarah E. , Sward Katherine A. , Del Fiol Guilherme , Staes Catherine , Weir Charlene , Cummins Mollie R. 
Published: July 2021

AbstractObjective There is a lack of evidence on how to best integrate patient-generated health data (PGHD) into electronic health record (EHR) systems in a way that supports provider needs, preferences, and workflows. The purpose of this study was to investigate provider preferences for the graphical display of pediatric asthma PGHD to support decisions and information needs in the outpatient setting.Methods In December 2019, we conducted a formative evaluation of information display prototypes using an iterative, participatory design process. Using multiple types of PGHD, we created two case-based vignettes for pediatric asthma and designed accompanying displays to support treatment decisions. Semi-structured interviews and questionnaires with six participants were used to evaluate the display usability and determine provider preferences.Results We identified provider preferences for display features, such as the use of color to indicate different levels of abnormality, the use of patterns to trend PGHD over time, and the display of environmental data. Preferences for display content included the amount of information and the relationship between data elements.Conclusion Overall, provider preferences for PGHD include a desire for greater detail, additional sources, and visual integration with relevant EHR data. In the design of PGHD displays, it appears that the visual synthesis of multiple PGHD elements facilitates the interpretation of the PGHD. Clinicians likely need more information to make treatment decisions when PGHD displays are introduced into practice. Future work should include the development of interactive interface displays with full integration of PGHD into EHR systems.
Radio frequency mixing modules for superconducting qubit room temperature control systems
Authors: Xu Yilun , Huang Gang , Santiago David I. , Siddiqi Irfan 
Published: July 2021

As the number of qubits in nascent quantum processing units increases, the connectorized RF (radio frequency) analog circuits used in first generation experiments become exceedingly complex. The physical size, cost, and electrical failure rate all become limiting factors in the extensibility of control systems. We have developed a series of compact RF mixing boards to address this challenge by integrating I/Q quadrature mixing, intermediate frequency/LO (local oscillator)/RF power level adjustments, and direct current bias fine tuning on a 40 × 80 mm2 four-layer printed circuit board with electromagnetic interference shielding. The RF mixing module is designed to work with RF and LO frequencies between 2.5 and 8.5 GHz. The typical image rejection and adjacent channel isolation are measured to be ∼27 dBc and ∼50 dB. By scanning the drive phase in a loopback test, the module short-term amplitude and phase linearity are typically measured to be 5 ×10−4 (Vpp/Vmean) and 1 ×10−3 radian (pk–pk). The operation of the RF mixing board was validated by integrating it into the room temperature control system of a superconducting quantum processor and executing randomized benchmarking characterization of single and two qubit gates. We measured a single-qubit process infidelity of 9.3(3) × 10−4 and a two-qubit process infidelity of 2.7(1) × 10−2.
Temperature effects on RNA polymerase initiation kinetics reveal which open complex initiates and that bubble collapse is stepwise
Authors: Plaskon Dylan M. , Henderson Kate L. , Felth Lindsey C. , Molzahn Cristen M. , Evensen Claire , Dyke Sarah , Shkel Irina A. , Record M. Thomas 
Published: July 2021

Significance
To transcribe DNA sequences into RNA, RNA polymerase (RNAP) first binds to promoter DNA. The promoter sequence dictates both binding strength and rate of remodeling the DNA duplex by RNAP to open 13 base pairs in the start site region. This open “bubble” allows complementary nucleotides to pair with template-strand bases and be incorporated into RNA. All sequence-specific, RNAP-promoter contacts must break for RNAP to escape and elongate the RNA, but how this occurs is not well understood. Here, we report rate constants for each initiation step at the λPR promoter at different temperatures. We analyze these data to obtain insights into which open complex initiates and when RNAP-promoter contacts are disrupted, allowing bubble collapse, duplex formation, and promoter escape.
Evolution of a σ–(c-di-GMP)–anti-σ switch
Authors: Schumacher Maria A. , Gallagher Kelley A. , Holmes Neil A. , Chandra Govind , Henderson Max , Kysela David T. , Brennan Richard G. , Buttner Mark J. 
Published: July 2021

SignificanceDiverse bacterial lifestyle transitions are controlled by the nucleotide second messenger c-di-GMP, including virulence, motility, and biofilm formation. To control such fundamentally distinct processes, the set of genes under c-di-GMP control must have gone through several shifts during bacterial evolution. Here we show that the same σ–(c-di-GMP)–anti-σ switch has been co-opted during evolution to regulate distinct biological functions in unicellular and filamentous bacteria, controlling type IV pilus production in the genusRubrobacterand the differentiation of reproductive hyphae into spores inStreptomyces. Moreover, we show that the anti-σ likely originated as a homodimer and evolved to become a monomer through an intragenic duplication event. This study thus describes the structural and functional evolution of a c-di-GMP regulatory switch.
Tight electrostatic regulation of the OH production rate from the photolysis of hydrogen peroxide adsorbed on surfaces
Authors: Ruiz-López Manuel F. , Martins-Costa Marilia T. C. , Francisco Joseph S. , Anglada Josep M. 
Published: July 2021

SignificanceThe photolysis of hydrogen peroxide produces OH radicals and has enormous environmental and technological relevance. Experiments have shown that the absorption cross-sections beyond 290 nm (solar radiation reaching the Earth’s surface) are not very different in the gas phase and in bulk water solution, and hence comparable photolytic rate constants are found in these two media. Computer simulations reported in the present article reveal, however, that the situation changes dramatically when hydrogen peroxide is adsorbed on surfaces. The results emphasize the role of the local electric field and describe a nonlinear variation of the absorption cross-sections with field strength. The implications of this finding are discussed.
Preparation for assembly and commissioning of ITER
Authors: Bigot B. 
Published: July 2021

Abstract
Progress is described on the construction of infrastructure and plant systems, and on the manufacturing of the ITER tokamak components and their assembly since the IAEA FEC 2018. Major achievements in this period have been the completion of the tokamak building and installation of the cryostat base and lower section that mark the start of tokamak assembly in 2020. This has been followed by the arrival of key core tokamak components to enable assembly of the first tokamak sector, which is made up of one vacuum vessel (VV) sector, 2 toroidal field (TF) coils and the corresponding thermal shield (TS), and the completion of manufacturing and testing of the first two poloidal field (PF) coils (PF5 and PF6). In parallel with this, the tools required for assembly have been commissioned and plant systems required for operations have progressed in construction and have started or will start commissioning in the near future. The remaining core tokamak components (e.g. the remaining eight VV sectors, TF coils, PF coils and central solenoid (CS) modules) are in advanced manufacturing state or already completed and under testing, as required for the assembly plan to first plasma (FP). In parallel with machine assembly, systems to support plasma operation during the FP and later phases of the ITER research plan (IRP) have made significant progress as well. This includes the plasma control system, for which the final design for FP has been completed, the electron cyclotron heating (ECH) system, diagnostic systems, plasma protection components for FP and the disruption mitigation system (DMS). The IRP itself has also been consolidated and specific issues identified where R&D support by the ITER Members’ fusion communities may refine it further. The consolidation of the IRP has involved changes to the upgrade paths considered in the baseline by the identification of MHD stable plasma scenarios that can meet ITER’s Q = 5 steady-state fusion power goal with neutral beam heating (NBI) and ECH thus removing the need for the installation of a lower hybrid current drive (LHCD) system previously included as an upgrade in the baseline for this specific purpose.
Corrigendum: Study of water discharge in the Ulee Lheue Port Channel, Indonesia (IOP Conf. Ser.: Earth Environ. Sci. 429 012013)
Authors: Setiawan I , Isbah F , Muhammad M , Yuni S M , Purnawan S , Akram A , Ilhamsyah Y 
Published: July 2021

Page 2:

In the section 2., the following text appears:

“2. Materials and metodhs”

This should read:

“2. Materials and methods”

In the 2.2. Research procedure section, the following text appears:
“This velocity measurement was held four times a day at the three depths, as presented in Figure 2.”
This should read:
“This velocity measurement was held four times a day at the three depths, as presented in Figure 1.”

Page 3:

In the 3.1. Water depth section, the following text appears:
“The data concerning water depth from the week I to IV are presented in Figure 3 to 6.”
This should read:
“The data concerning water depth from the week I to IV are presented in Figure 2 to 5.”

Page 5:

In the 3.2. The current velocity section, the following text appears:
“Figure 7 shows that is the current velocity of the 5th day at 03:00 pm was the highest in the first week, that was 0.26 m/s.”
“Based on Figure 8, the current velocity on 12th Jumada I at 09:00 am was 0.35 m/s because the depth of the water also headed towards the tide, resulting in the large current into the port channel.”
This should read:
“Figure 6 shows that is the current velocity of the 5th day at 03:00 pm was the highest in the first week, that was 0.26 m/s.”
“Based on Figure 7, the current velocity on 12th Jumada I at 09:00 am was 0.35 m/s because the depth of the water also headed towards the tide, resulting in the large current into the port channel.”
Retraction: Natural Microalgae Biofilm As A Tool To Clean-Up Mining Wastewater (IOP Conf. Ser.: Earth Environ. Sci.
775 012014)
Authors: Anbu Kumar S. , Gupta Shivam , Kumar Shubham , Meena Pawan Kumar 
Published: July 2021

It has come to the attention of IOP Publishing that this article should not have been submitted for publication because of its substantial replication without citation of an earlier-published paper (Adamu Yunusa Ugya, et al 2020, All Life, 13:1, 644-657). Consequently, this paper has been retracted by IOP Publishing. The authors agree to this retraction.
Retraction published: 21 July 2021
Conclusion
Authors: Tyler Amanda L. 
Published: July 2021

Abstract
The book concludes by celebrating aspects of the history of the writ of habeas corpus as a great writ of liberty, observing that the writ has served as a vehicle for securing the freedom of political prisoners and slaves and for the declaration of bedrock constitutional rights in criminal cases. But, the conclusion also notes, it is also the case that habeas corpus has sometimes fallen short, as the World War II mass incarceration of Japanese Americans reveals. Habeas, in other words, is sometimes only as effective as the politics of the time permit. Highlighting the challenges that lie ahead for the future of the storied writ, the conclusion suggests that we would do well to recall the period when the writ earned Blackstone’s praise as a “second magna carta,” for that history tells a story of a habeas writ that could bring even the King of England to his knees before the law.
Characteristics of Work and Employment Related to Leisure-Time Physical Activity: Results of the National Health Survey, Brazil, 2013
Authors: Assunção Ada A , Claro Rafael Moreira 
Published: July 2021

Abstract
Leisure-time physical activity (LTPA) is a crucial behavior to reduce the global burden of disease. The objective of this study was to understand the relationship between LTPA, employment status, and physical workload (PWL). This study analyzed data from 38 449 individuals interviewed in the National Health Survey (NHS), representative of the Brazilian population. This paper examines LTPA in the last 30 days and whether participants achieved the recommended physical activity (≥150 min week−1) according to employment status and PWL utilizing Poisson regression models. One third and ¼ of the participants reported LTPA in the last 30 days and achieved the recommended LTPA, respectively. Intense PWL was reported by 28.7% [95% confidence interval (CI): 27.8–29.6%] of participants; 32.2% among men (95% CI: 31.0–33.5%); 24.3% among women (95% CI: 23.1–25.5%). Precarious employment was associated with a lower prevalence of physical activity among men [adjusted prevalence ratio (PRa) = 0.92; P = 0.016], but not among women (PRa = 1.11; P = 0.039). Employment policies and protection of the work environment are relevant aspects to stimulate physical activity, and may vary by gender.
Hydrogen peroxide induces progranulin expression to control neurite outgrowth in HT22 cells
Authors: Shimoda Ayumu , Tanabe Takemi , Sato Tsubasa , Nedachi Taku 
Published: July 2021

ABSTRACT
Progranulin (PGRN) is a multifunctional growth factor expressed in central nervous system. Although PGRN expression is regulated by various stressors, its precise role(s) and regulatory mechanism(s) remain elusive. In this study, we used HT22 cells to investigate the physiological implications of oxidative stress-induced PGRN expression and the regulation of PGRN expression by oxidative stress. We observed that p38 MAP kinase was activated upon the addition of H2O2, and a selective p38 MAP kinase inhibitor attenuated PGRN induction by H2O2. To explore the physiological role(s) of the PGRN induction, we first confirmed H2O2-dependent responses of HT22 cells and found that the length and number of neurites were increased by H2O2. Pgrn knockdown experiments suggested that these changes were mediated by H2O2-induced PGRN expression, at least in part. Overall, the results suggested that an increase in oxidative stress in HT22 cells induced PGRN expression via p38 MAP kinase pathway, thereby controlling neurite outgrowth.
FlowGrid enables fast clustering of very large single-cell RNA-seq data
Authors: Fang Xiunan , Ho Joshua W K 
Published: July 2021

Abstract

Motivation
Scalable clustering algorithms are needed to analyze millions of cells in single cell RNA-seq (scRNA-seq) data.

Results
Here, we present an open source python package called FlowGrid that can integrate into the Scanpy workflow to perform clustering on very large scRNA-seq datasets. FlowGrid implements a fast density-based clustering algorithm originally designed for flow cytometry data analysis. We introduce a new automated parameter tuning procedure, and show that FlowGrid can achieve comparable clustering accuracy as state-of-the-art clustering algorithms but at a substantially reduced run time for very large single cell RNA-seq datasets. For example, FlowGrid can complete a one-hour clustering task for one million cells in about five min.

Availability and implementation
https://github.com/holab-hku/FlowGrid.

Supplementary information
Supplementary data are available at Bioinformatics online.
USO1 isoforms differentially promote liver cancer progression by dysregulating the ER–Golgi network
Authors: Yoon Sarah , Choi Ji-Hye , Shah Masaud , Kwon So Mee , Yang Jieun , Park Young Nyun , Wang Hee-Jung , Woo Hyun Goo 
Published: July 2021

AbstractAlternative splicing of RNA transcripts plays an important role in cancer development and progression. Recent advances in RNA-seq technology have made it possible to identify alternately spliced events in various types of cancer; however, research on hepatocellular carcinoma (HCC) is still limited. Here, by performing RNA-seq profiling of HCC transcripts at isoform level, we identified tumor-specific and molecular subtype-dependent expression of the USO1 isoforms, which we designated as a normal form USO1-N (XM_001290049) and a tumor form USO1-T (NM_003715). The expression of USO1-T, but not USO1-N, was associated with worse prognostic outcomes of HCC patients. We confirmed that the expression of USO1-T promoted an aggressive phenotype of HCC, both in vitro and in vivo. In addition, structural modeling analyses revealed that USO1-T lacks an ARM10 loop encoded by exon 15, which may weaken the dimerization of USO1 and its tethering to GM130. We demonstrated that USO1-T ensured unstacking of the Golgi and accelerated the vesicles trafficking from endoplasmic reticulum (ER) to Golgi and plasma membrane in multiple liver cancer cells. ERK and GRASP65 were found to be involved in the USO1-T-mediated Golgi dysfunction. Conclusively, we provide new mechanophysical insights into the USO1 isoforms that differentially regulate the ER–Golgi network, promoting the heterogeneous HCC progression.
Composing an Oppositional Discourse inCoke Studio Pakistan
Authors: D’Souza Ryan A 
Published: July 2021

AbstractCoke Studio Pakistan (CSP) is a television show aired in Pakistan and available worldwide on digital platforms. The show features well-known and up-and-coming music artists alongside a studio band who cover contemporary and familiar songs. Some of the popular songs are fusions of traditional compositions and Western instrumentation. The Sufi renditions on the show are popular as well. The music produced on CSP is not necessarily unique to the nation state’s mediascape. Notwithstanding, the music is a novel presentation of Pakistani culture to a transnational audience. The following article positions the show in the dominant Western discourses that construct the nation as an intolerant and orthodox Islamic state harboring terrorists. The author argues that CSP composes an oppositional discourse by showcasing transgressively gendered performances and a mystical and subversive Islam.