bluuebunny/crossref_metadata_2025_split huggingface dataset:
Serological assessment of SARS-CoV-2 infection during the first wave of the pandemic in Louisville Kentucky
Authors: Hamorsky Krystal T. , Bushau-Sprinkle Adrienne M. , Kitterman Kathleen , Corman Julia M. , DeMarco Jennifer , Keith Rachel J. , Bhatnagar Aruni , Fuqua Joshua L. , Lasnik Amanda , Joh Joongho , Chung Donghoon , Klein Jon , Flynn Joseph , Gardner Marti , Barve Shirish , Ghare Smita S. , Palmer Kenneth E. 
Published: September 2021

AbstractSerological assays intended for diagnosis, sero-epidemiologic assessment, and measurement of protective antibody titers upon infection or vaccination are essential for managing the SARS-CoV-2 pandemic. Serological assays measuring the antibody responses against SARS-CoV-2 antigens are readily available. However, some lack appropriate characteristics to accurately measure SARS-CoV-2 antibodies titers and neutralization. We developed an Enzyme-linked Immunosorbent Assay (ELISA) methods for measuring IgG, IgA, and IgM responses to SARS-CoV-2, Spike (S), receptor binding domain (RBD), and nucleocapsid (N) proteins. Performance characteristics of sensitivity and specificity have been defined. ELISA results show positive correlation with microneutralization and Plaque Reduction Neutralization assays with infectious SARS-CoV-2. Our ELISA was used to screen healthcare workers in Louisville, KY during the first wave of the local pandemic in the months of May and July 2020. We found a seropositive rate of approximately 1.4% and 2.3%, respectively. Our analyses demonstrate a broad immune response among individuals and suggest some non-RBD specific S IgG and IgA antibodies neutralize SARS-CoV-2.
Study on the hydrothermal coupling characteristics of polyurethane insulation boards slope protection structure incorporating phase change effect
Authors: Liu Hailiang , Ma Donghe , Wang Changming , Liu Xiaoyang , Wu Di , Li Bailong , Khan Kaleem Ullah Jan 
Published: September 2021

AbstractThe canals are essential for agricultural irrigation, shipping and industry as important hydraulic infrastructure. In the seasonal freeze regions, the water conveyance canals are damaged due to the effects of freeze–thaw cycles. The freeze depth of soil in the water transfer canal varies considerably due to changes in temperature and water content. This paper compared the relationship of freeze depth, temperature and water content by field tests and numerical calculation methods by incorporating phase change. The results from present study showed that the decrease in temperature causes the water in the soil to freeze, the ice front migrated downwards, and the water in soil below ice front gradually migrated towards the ice front resulting in a large difference in water content of the soil before and after freezing. The Polyurethane insulation board + Concrete board slope structure (PC) as an insulation slope structure was proposed in this paper to mitigate the effect of freezing and thawing on the water conveyance canals. The freeze depth decreased significantly under the protective effect. In addition, this paper compared the anti-frost effect of different thicknesses of polyurethane insulation boards, and the results provided a reference for the anti-frost design of water conveyance canals.
Nadir CA-125 has prognostic value for recurrence, but not for survival in patients with ovarian cancer
Authors: Piatek Szymon , Panek Grzegorz , Lewandowski Zbigniew , Piatek Dominika , Kosinski Przemyslaw , Bidzinski Mariusz 
Published: September 2021

AbstractThe objective of this study was to evaluate the nadir CA-125 in patients with epithelial ovarian cancer. A total of 168 patients who achieved complete remission (no clinical and radiological signs, CA-125 ≤ 35 U/ml) after first-line treatment were enrolled in the study. The relationship between CA-125 and survival was examined by applying generalized additive models to the Cox proportional hazards model. The median CA-125 concentration after the treatment was 10 U/ml (2.7–35 U/ml). The nadir CA-125 was related to progression-free survival but not to overall survival. The risk of recurrence in patients with 11–25 U/ml and 26–35 U/ml compared to patients with ≤ 10 U/ml was 1.87 (p < 0.0024) and 2.17 (p < 0.018), respectively. An increased risk of recurrence according to the nadir CA-125 (≤ 10 U/ml vs. 11–25 U/ml and ≤ 10 U/ml vs. 26–35 U/ml) was found in patients with high-grade tumours (hazard ratio, HR = 2.08 and 2.59, respectively), advanced disease (HR = 2.38 and 2.03, respectively), serous histology (HR = 2.08 and 2.43, respectively) and after complete cytoreduction (HR = 2.7 and 2.72, respectively). No correlation between the CA-125 nadir and recurrence risk was found in patients with early-stage disease or those receiving neoadjuvant chemotherapy or bevacizumab.
Red-lesion extraction in retinal fundus images by directional intensity changes’ analysis
Authors: Monemian Maryam , Rabbani Hossein 
Published: September 2021

AbstractDiabetic retinopathy (DR) is an important retinal disease threatening people with the long diabetic history. Blood leakage in retina leads to the formation of red lesions in retina the analysis of which is helpful in the determination of severity of disease. In this paper, a novel red-lesion extraction method is proposed. The new method firstly determines the boundary pixels of blood vessel and red lesions. Then, it determines the distinguishing features of boundary pixels of red-lesions to discriminate them from other boundary pixels. The main point utilized here is that a red lesion can be observed as significant intensity changes in almost all directions in the fundus image. This can be feasible through considering special neighborhood windows around the extracted boundary pixels. The performance of the proposed method has been evaluated for three different datasets including Diaretdb0, Diaretdb1 and Kaggle datasets. It is shown that the method is capable of providing the values of 0.87 and 0.88 for sensitivity and specificity of Diaretdb1, 0.89 and 0.9 for sensitivity and specificity of Diaretdb0, 0.82 and 0.9 for sensitivity and specificity of Kaggle. Also, the proposed method has a time-efficient performance in the red-lesion extraction process.
Changes in muscle ultrasound for the diagnosis of intensive care unit acquired weakness in critically ill patients
Authors: Zhang Weiqing , Wu Jun , Gu Qiuying , Gu Yanting , Zhao Yujin , Ge Xiaoying , Sun Xiaojing , Lian Jun , Zeng Qian 
Published: September 2021

AbstractTo test diagnostic accuracy of changes in thickness (TH) and cross-sectional area (CSA) of muscle ultrasound for diagnosis of intensive care unit acquired weakness (ICU-AW). Fully conscious patients were subjected to muscle ultrasonography including measuring the changes in TH and CSA of biceps brachii (BB) muscle, vastus intermedius (VI) muscle, and rectus femoris (RF) muscles over time. 37 patients underwent muscle ultrasonography on admission day, day 4, day 7, and day 10 after ICU admission, Among them, 24 were found to have ICW-AW. Changes in muscle TH and CSA of RF muscle on the right side showed remarkably higher ROC-AUC and the range was from 0.734 to 0.888. Changes in the TH of VI muscle had fair ROC-AUC values which were 0.785 on the left side and 0.779 on the right side on the 10th day after ICU admission. Additionally, Sequential Organ Failure Assessment (SOFA), Acute Physiology, and Chronic Health Evaluation II (APACHE II) scores also showed good discriminative power on the day of admission (ROC-AUC 0.886 and 0.767, respectively). Ultrasonography of changes in muscles, especially in the TH of VI muscle on both sides and CSA of RF muscle on the right side, presented good diagnostic accuracy. However, SOFA and APACHE II scores are better options for early ICU-AW prediction due to their simplicity and time efficiency.
Risk factors for macular pucker after rhegmatogenous retinal detachment surgery
Authors: Hirakata Toshiaki , Hiratsuka Yoshimune , Yamamoto Shutaro , Kanbayashi Koki , Kobayashi Hiroaki , Murakami Akira 
Published: September 2021

AbstractMacular pucker, also known as an epiretinal membrane, sometimes forms after surgical repair of a rhegmatogenous retinal detachment (RRD) and can decrease visual acuity and cause aniseikonia. However, few reports are evaluating the risk factors of macular pucker using multivariate analysis. To evaluate the risk factors for macular pucker after RRD surgery, 226 patients who underwent RRD surgery and were monitored for greater than 12 months (23.2 ± 6.4 months) after surgery were analyzed retrospectively. Of these cases, macular pucker developed in 26 cases. Multiple logistic regression models of 22 clinical characteristics were performed. An increased risk of macular pucker after RRD surgery was significantly associated with preoperative vitreous haemorrhage (Odds ratio (OR), 4.71; 95% CI 1.19–18.62), multiple retinal breaks (OR, 8.07; 95% CI 2.35–27.71), re-detachment (OR, 19.66; 95% CI 4.87–79.38), and retinal detachment area (OR, 12.91; 95% CI 2.34–71.19). Macular pucker was not associated with the surgical technique. Regardless of the surgical technique used, careful observation for postoperative macular pucker is needed after RRD surgery in high-risk cases. These findings can be used to improve the surgical management of patients with RRD. (183 words).
Corneal endothelial cell density and morphology in ophthalmologically healthy young individuals in Japan: An observational study of 16842 eyes
Authors: Ono Takashi , Mori Yosai , Nejima Ryohei , Iwasaki Takuya , Miyai Takashi , Miyata Kazunori 
Published: September 2021

AbstractWe aimed to investigate the cell density and morphology of the corneal endothelium in ophthalmologically healthy young Japanese, given the lack of normative data in literature. This observational study included eyes without ophthalmologic diseases, besides refractive errors, examined between 1996 and 2015 at Miyata Eye Hospital. Eyes with a history of ophthalmologic diseases or contact lens usage were excluded. Correlation of corneal endothelial cell density (ECD), coefficient of variation (CV), appearance rate of hexagonal cells (6A), and cell area with age were examined. Multivariate linear regression analysis was performed to determine the predictors of corneal parameters. We included 16842 eyes of 8421 individuals (19.6 ± 8.7 years). ECD was 3109.0 ± 303.7 cells/mm2 and significantly reduced with age (p < 0.001). The ECD reduction rate was 0.42%/year in the total population. On multivariate analysis, age and sex were significantly correlated with ECD, CV, 6A, and cell area (all p < 0.001). ECD, 6A, CV, and cell area are significantly associated with age in healthy young Japanese individuals. Monitoring their corneal endothelium is essential to assess the risk of endothelial damage.
Removal behaviour of residual pollutants from biologically treated palm oil mill effluent by Pennisetum purpureum in constructed wetland
Authors: Ujang Farhana Aziz , Roslan Ahmad Muhaimin , Osman Nurul Atiqah , Norman Ashreen , Idris Juferi , Farid Mohammed Abdillah Ahmad , Halmi Mohd Izuan Effendi , Gozan Misri , Hassan Mohd Ali 
Published: September 2021

AbstractThe reason for such enormous efforts in palm oil mill effluent research would be what has been singled out as one of the major sources of pollution in Malaysia, and perhaps the most costly and complex waste to manage. Palm oil mill final discharge, which is the treated effluent, will usually be discharged to nearby land or river since it has been the least costly way to dispose of. Irrefutably, the quality level of the treated effluent does not always satisfy the surface water quality in conformity to physicochemical characteristics. To work on improving the treated effluent quality, a vertical surface-flow constructed wetland system was designed with Pennisetum purpureum (Napier grass) planted on the wetland floor. The system effectively reduced the level of chemical oxygen demand by 62.2 ± 14.3%, total suspended solid by 88.1 ± 13.3%, ammonia by 62.3 ± 24.8%, colour by 66.6 ± 13.19%, and tannin and lignin by 57.5 ± 22.3%. Heat map depicted bacterial diversity and relative abundance in life stages from the wetland soil, whereby bacterial community associated with the pollutant removal was found to be from the families Anaerolineaceae and Nitrosomonadaceae, and phyla Cyanobacteria and Acidobacteria.
A reassessment and comparison of the Landolt C and tumbling E charts in managing amblyopia
Authors: Lai Yu-Hung , Wu Horng-Jiun , Chang Shun-Jen 
Published: September 2021

AbstractCurrent criteria for amblyopia do not account for difference in visual acuity charts. This prospective observational study analyzed 100 children younger than 10 years treated at a tertiary referral center. Visual acuity was separately tested in each eye using Landolt C and tumbling E charts in a random order. For each chart, receiver operating characteristic curve analysis was performed to determine the best cutoff for visual acuity score. Main outcome measures included the difference in visual acuity scores between the two charts, the feasibility of repeated testing of visual acuity in each eye, and amblyopia cutoff values for each chart. Mean logMAR visual acuity scores obtained by tumbling E chart were significantly better than those obtained by Landolt C chart. For amblyopia, the best cutoff values were <  + 0.14 (20/27 Snellen equivalent) for tumbling E chart and <  + 0.24 (20/35 Snellen equivalent) for Landolt C chart. For children under 10 years old, visual acuity scores for tumbling E chart were significantly better than those for Landolt C chart. We suggest that amblyopia management in children should account for age and the type of visual acuity chart used.
Research on damping performance and strength of the composite laminate
Authors: Zhang Bao , Li Zhi , Wu Huawei , Nie Jinquan 
Published: September 2021

AbstractIn this paper, the influence of E-glass fiber volume fraction and laying angle on the damping and strength of composite laminates was comprehensively analyzed. By increasing the fiber laying angle and reducing the glass fiber volume fraction, the damping capacity of the composite laminate was increased, but the tensile strength of the laminate was reduced; By reducing the fiber laying angle and increasing the glass fiber volume fraction, the tensile strength of the composite laminate was increased, but the damping characteristics of the laminate was reduced. In addition, in the damping experiment of composite laminates, in order to avoid the influence of external damping sources, the vacuum non-contact damping test method was adopted in this paper, and the influence of air damping on the damping experiment results of composite laminates was comparatively analyzed. The results of comparative experiments showed that air damping had a very obvious influence on the damping of composite laminates, especially when the damping of composite laminates was small, the influence of air damping would be greater.
Evidence of shared and distinct functional and structural brain signatures in schizophrenia and autism spectrum disorder
Authors: Du Yuhui , Fu Zening , Xing Ying , Lin Dongdong , Pearlson Godfrey , Kochunov Peter , Hong L. Elliot , Qi Shile , Salman Mustafa , Abrol Anees , Calhoun Vince D. 
Published: September 2021

AbstractSchizophrenia (SZ) and autism spectrum disorder (ASD) share considerable clinical features and intertwined historical roots. It is greatly needed to explore their similarities and differences in pathophysiologic mechanisms. We assembled a large sample size of neuroimaging data (about 600 SZ patients, 1000 ASD patients, and 1700 healthy controls) to study the shared and unique brain abnormality of the two illnesses. We analyzed multi-scale brain functional connectivity among functional networks and brain regions, intra-network connectivity, and cerebral gray matter density and volume. Both SZ and ASD showed lower functional integration within default mode and sensorimotor domains, but increased interaction between cognitive control and default mode domains. The shared abnormalties in intra-network connectivity involved default mode, sensorimotor, and cognitive control networks. Reduced gray matter volume and density in the occipital gyrus and cerebellum were observed in both illnesses. Interestingly, ASD had overall weaker changes than SZ in the shared abnormalities. Interaction between visual and cognitive regions showed disorder-unique deficits. In summary, we provide strong neuroimaging evidence of the convergent and divergent changes in SZ and ASD that correlated with clinical features.
Identifying the lungs as a susceptible site for allele-specific regulatory changes associated with type 1 diabetes risk
Authors: Ho Daniel , Nyaga Denis M. , Schierding William , Saffery Richard , Perry Jo K. , Taylor John A. , Vickers Mark H. , Kempa-Liehr Andreas W. , O’Sullivan Justin M. 
Published: September 2021

AbstractType 1 diabetes (T1D) etiology is complex. We developed a machine learning approach that ranked the tissue-specific transcription regulatory effects for T1D SNPs and estimated their relative contributions to conversion to T1D by integrating case and control genotypes (Wellcome Trust Case Control Consortium and UK Biobank) with tissue-specific expression quantitative trait loci (eQTL) data. Here we show an eQTL (rs6679677) associated with changes toAP4B1-AS1transcript levels in lung tissue makes the largest gene regulatory contribution to the risk of T1D development. Luciferase reporter assays confirmed allele-specific enhancer activity for the rs6679677 tagged locus in lung epithelial cells (i.e. A549 cells; C > A reduces expression,p = 0.005). Our results identify tissue-specific eQTLs for SNPs associated with T1D. The strongest tissue-specific eQTL effects were in the lung and may help explain associations between respiratory infections and risk of islet autoantibody seroconversion in young children.
Lysine-selective molecular tweezers are cell penetrant and concentrate in lysosomes
Authors: Li Zizheng , Siddique Ibrar , Hadrović Inesa , Kirupakaran Abbna , Li Jiwen , Zhang Ye , Klärner Frank-Gerrit , Schrader Thomas , Bitan Gal 
Published: September 2021

AbstractLysine-selective molecular tweezers are promising drug candidates against proteinopathies, viral infection, and bacterial biofilm. Despite demonstration of their efficacy in multiple cellular and animal models, important questions regarding their mechanism of action, including cell penetrance and intracellular distribution, have not been answered to date. The main impediment to answering these questions has been the low intrinsic fluorescence of the main compound tested to date, called CLR01. Here, we address these questions using new fluorescently labeled molecular tweezers derivatives. We show that these compounds are internalized in neurons and astrocytes, at least partially through dynamin-dependent endocytosis. In addition, we demonstrate that the molecular tweezers concentrate rapidly in acidic compartments, primarily lysosomes. Accumulation of molecular tweezers in lysosomes may occur both through the endosomal-lysosomal pathway and via the autophagy-lysosome pathway. Moreover, by visualizing colocalization of molecular tweezers, lysosomes, and tau aggregates we show that lysosomes likely are the main site for the intracellular anti-amyloid activity of molecular tweezers. These findings have important implications for the mechanism of action of molecular tweezers in vivo, explaining how administration of low doses of the compounds achieves high effective concentrations where they are needed, and supporting the development of these compounds as drugs for currently cureless proteinopathies.
Topological flocking models in spatially heterogeneous environments
Authors: Rahmani Parisa , Peruani Fernando , Romanczuk Pawel 
Published: September 2021

AbstractFlocking models with metric and topological interactions are supposed to exhibit distinct features, as for instance the presence and absence of moving polar bands. On the other hand, quenched disorder (spatial heterogeneities) has been shown to dramatically affect large-scale properties of active systems with metric interactions, while the impact of quenched disorder on active systems with metric-free interactions has remained, until now, unexplored. Here, we show that topological flocking models recover several features of metric ones in homogeneous media, when placed in a heterogeneous environment. In particular, we find that order is long-ranged even in the presence of spatial heterogeneities, and that the heterogeneous environment induces an effective density-order coupling facilitating emergence of traveling bands, which are observed in wide regions of parameter space. We argue that such a coupling results from a fluctuation-induced rewiring of the topological interaction network, strongly enhanced by the presence of spatial heterogeneities.
Evidence for accelerated aging in mammary epithelia of women carrying germline BRCA1 or BRCA2 mutations
Authors: Shalabi Sundus F. , Miyano Masaru , Sayaman Rosalyn W. , Lopez Jennifer C. , Jokela Tiina A. , Todhunter Michael E. , Hinz Stefan , Garbe James C. , Stampfer Martha R. , Kessenbrock Kai , Seewaldt Victoria E. , LaBarge Mark A. 
Published: September 2021

AbstractDuring aging in the human mammary gland, luminal epithelial cells lose lineage fidelity by expressing markers normally expressed in myoepithelial cells. We hypothesize that loss of lineage fidelity is a general manifestation of epithelia that are susceptible to cancer initiation. In the present study, we show that histologically normal breast tissue from younger women who are susceptible to breast cancer, as a result of harboring a germline mutation in BRCA1, BRCA2 or PALB2 genes, exhibits hallmarks of accelerated aging. These include proportionately increased luminal epithelial cells that acquired myoepithelial markers, decreased proportions of myoepithelial cells and a basal differentiation bias or failure of differentiation of cKit+ progenitors. High-risk luminal and myoepithelial cells are transcriptionally enriched for genes of the opposite lineage, inflammatory- and cancer-related pathways. We have identified breast-aging hallmarks that reflect a convergent biology of cancer susceptibility, regardless of the specific underlying genetic or age-dependent risk or the associated breast cancer subtype.