bluuebunny/crossref_metadata_2025_split huggingface dataset:
Deep learning approach for an interface structure analysis with a large statistical noise in neutron reflectometry
Authors: Aoki Hiroyuki , Liu Yuwei , Yamashita Takashi 
Published: November 2021

AbstractNeutron reflectometry (NR) allows us to probe into the structure of the surfaces and interfaces of various materials such as soft matters and magnetic thin films with a contrast mechanism dependent on isotopic and magnetic states. The neutron beam flux is relatively low compared to that of other sources such as synchrotron radiation; therefore, there has been a strong limitation in the time-resolved measurement and further advanced experiments such as surface imaging. This study aims at the development of a methodology to enable the structural analysis by the NR data with a large statistical error acquired in a short measurement time. The neural network-based method predicts the true NR profile from the data with a 20-fold lower signal compared to that obtained under the conventional measurement condition. This indicates that the acquisition time in the NR measurement can be reduced by more than one order of magnitude. The current method will help achieve remarkable improvement in temporally and spatially resolved NR methods to gain further insight into the surface and interfaces of materials.
Insights on embodiment induced by visuo-tactile stimulation during robotic telepresence
Authors: Farizon D. , Dominey P. F. , Ventre-Dominey J. 
Published: November 2021

AbstractUsing a simple neuroscience-inspired procedure to beam human subjects into robots, we previously demonstrated by visuo-motor manipulations that embodiment into a robot can enhance the acceptability and closeness felt towards the robot. In that study, the feelings of likeability and closeness toward the robot were significantly related to the sense of agency, independently of the sensations of enfacement and location. Here, using the same paradigm we investigated the effect of a purely sensory manipulation on the sense of robotic embodiment associated to social cognition. Wearing a head-mounted display, participants saw the visual scene captured from the robot eyes. By positioning a mirror in front of the robot, subjects saw themselves as a robot. Tactile stimulation was provided by stroking synchronously or not with a paintbrush the same location of the subject and robot faces. In contrast to the previous motor induction of embodiment which particularly affected agency, tactile induction yields more generalized effects on the perception of ownership, location and agency. Interestingly, the links between positive social feelings towards the robot and the strength of the embodiment sensations were not observed. We conclude that the embodiment into a robot is not sufficient in itself to induce changes in social cognition.
Clinical and biological markers for predicting ARDS and outcome in septic patients
Authors: Villar Jesús , Herrán-Monge Rubén , González-Higueras Elena , Prieto-González Miryam , Ambrós Alfonso , Rodríguez-Pérez Aurelio , Muriel-Bombín Arturo , Solano Rosario , Cuenca-Rubio Cristina , Vidal Anxela , Flores Carlos , González-Martín Jesús M. , García-Laorden M. Isabel ,   Genetics of Sepsis (GEN-SEP) Network, Adalia Ramón , Sánchez-Etayo Gerard , Ambrós Alfonso , Martín-Rodríguez Carmen , González-Higueras Elena , Solano Rosario , Martínez-García Laura , García-Laorden M. Isabel , Villar Jesús , González-Martín Jesús M. , Rodríguez-Pérez Aurelio , Becerra Ángel , Valencia Lucía , Carriedo Demetrio , Díaz Domínguez Francisco Javier , Vidal Anxela , Añón José M. , Millán Pablo , Martínez Domingo , Prieto-González Miryam , Cuenca-Rubio Cristina , García-Sánchez Ana Isabel , Álvarez-Martínez Braulio , Fernández-Pérez Perfectino , Otero-Alvarín Efrén , Flores Carlos , Aguilar Gerardo , Segura Nasara , Soro Marina , Herrán-Monge Rubén , Muriel-Bombín Arturo , García-García Marta M. , Tarancón Concepción , Álvarez Teresa 
Published: November 2021

AbstractSepsis is a common cause of acute respiratory distress syndrome (ARDS) associated with a high mortality. A panel of biomarkers (BMs) to identify septic patients at risk for developing ARDS, or at high risk of death, would be of interest for selecting patients for therapeutic trials, which could improve ARDS diagnosis and treatment, and survival chances in sepsis and ARDS. We measured nine protein BMs by ELISA in serum from 232 adult septic patients at diagnosis (152 required invasive mechanical ventilation and 72 had ARDS). A panel including the BMs RAGE, CXCL16 and Ang-2, plus PaO2/FiO2, was good in predicting ARDS (area under the curve = 0.88 in total septic patients). Best performing panels for ICU death are related to the presence of ARDS, need for invasive mechanical ventilation, and pulmonary/extrapulmonary origin of sepsis. In all cases, the use of BMs improved the prediction by clinical markers. Our study confirms the relevance of RAGE, Ang-2, IL-1RA and SP-D, and is novel supporting the inclusion of CXCL16, in BMs panels for predicting ARDS diagnosis and ARDS and sepsis outcome.
Oscillatory active microrheology of active suspensions
Authors: Knežević Miloš , Avilés Podgurski Luisa E. , Stark Holger 
Published: November 2021

AbstractUsing the method of Brownian dynamics, we investigate the dynamic properties of a 2d suspension of active disks at high Péclet numbers using active microrheology. In our simulations the tracer particle is driven either by a constant or an oscillatory external force. In the first case, we find that the mobility of the tracer initially appreciably decreases with the external force and then becomes approximately constant for larger forces. For an oscillatory driving force we find that the dynamic mobility shows a quite complex behavior—it displays a highly nonlinear behavior on both the amplitude and frequency of the driving force. In the range of forces studied, we do not observe a linear regime. This result is important because it reveals that a phenomenological description of tracer motion in active media in terms of a simple linear stochastic equation even with a memory-mobility kernel is not appropriate, in the general case.
Nutritional evaluation and transcriptome analyses of short-time germinated seeds in soybean (Glycine max L. Merri.)
Authors: Hu Wei , Liu Xiaoxue , Xiong Yajun , Liu Tingxuan , Li Zhan , Song Jian , Wang Jun , Wang Xianzhi , Li Xiaofang 
Published: November 2021

AbstractGermination is a common practice for nutrition improvement in many crops. In soybean, the nutrient value and genome-wide gene expression pattern of whole seeds germinated for short-time has not been fully investigated. In this study, protein content (PC), water soluble protein content (WSPC), isoflavone compositions were evaluated at 0 and 36 h after germination (HAG), respectively. The results showed that at 36HAG, PC was slightly decreased (P > 0.05) in ZD41, J58 and JHD, WSPC and free isoflavone (aglycones: daidzein, genistein, and glycitein) were significantly increased (P < 0.05), while total isoflavone content was unchanged. Transcriptomic analysis identified 5240, 6840 and 15,766 DEGs in different time point comparisons, respectively. GO and KEGG analysis showed that photosynthesis process was significantly activated from 18HAG, and alternative splicing might play an important role during germination in a complex manner. Response to hydrogen peroxide (H2O2) was found to be down regulated significantly from 18 to 36HAG, suggesting that H2O2 might play an important role in germination. Expression pattern analysis showed the synthesis of storage proteins was slowing down, while the genes coding for protein degradation (peptidase and protease) were up regulated as time went by during germination. For genes involved in isoflavone metabolism pathway, UGT (7-O-glucosyltransferase) coding genes were significantly up regulated (40 up-DEGs vs 27 down-DEGs), while MAT (7-O-glucoside-6′′-O-malonyltransferase) coding genes were down regulated, which might explain the increase of aglycones after germination. This study provided a universal transcriptomic atlas for whole soybean seeds germination in terms of nutrition and gene regulation mechanism.
Self-reported (IFIS) versus measured physical fitness, and their associations to cardiometabolic risk factors in early pregnancy
Authors: Henström Maria , Leppänen Marja H. , Henriksson Pontus , Söderström Emmie , Sandborg Johanna , Ortega Francisco B. , Löf Marie 
Published: November 2021

AbstractPhysical fitness is a strong marker of health, but objective fitness measurements are not always feasible. The International FItness Scale (IFIS) for self-reported fitness is a simple-to-use tool with demonstrated validity and reliability; however, validation in pregnancy needs to be confirmed. Also, its association with cardiometabolic health in pregnant women is unknown. Hence, we examined (1) the validity of the IFIS with objectively measured fitness, and (2) the associations of self-reported versus objectively measured cardiorespiratory fitness (CRF) and muscular strength with cardiometabolic risk factors in early pregnancy. Women (n = 303) from the HealthyMoms trial were measured at gestational week 14 for: CRF (6-min walk test); upper-body muscular strength (handgrip strength test); self-reported fitness (IFIS), body composition (air-displacement plethysmography); blood pressure and metabolic parameters (lipids, glucose, insulin). Higher self-reported fitness was associated with better measured fitness (ANOVA overall p < 0.01 for all fitness types), indicating the usefulness of the IFIS in pregnancy. Furthermore, higher self-reported overall fitness and CRF were associated with lower cardiometabolic risk scores (ANOVA p < 0.001), with similar results shown for measured CRF (ANOVA p < 0.001). The findings suggest that IFIS could be useful to stratify pregnant women in appropriate fitness levels on a population-based level where objective measurement is not possible.
A metabolomics approach to evaluate the effect of lyophilization versus oven drying on the chemical composition of plant extracts
Authors: ElNaker Nancy A. , Daou Mariane , Ochsenkühn Michael A. , Amin Shady A. , Yousef Ahmed F. , Yousef Lina F. 
Published: November 2021

AbstractLyophilization is the “gold standard” for drying plant extracts, which is important in preserving their quality and extending their shelf-life. Compared to other methods of drying plant extracts, lyophilization is costlier due to equipment, material and operational expenses. An alternative method is post-extraction oven-drying, but the effects of this process on extract quality are unknown. In this study, crude extracts fromArthrocnemum macrostachyumshoots were compared using three post-extraction drying methods (lyophilization and oven drying at 40 and 60 °C) and two extraction solvents (water and aqueous 50% ethanol). Untargeted metabolomics coupled with chemometrics analysis revealed that post extraction oven-drying resulted in the loss of up to 27% of molecular features when compared to lyophilization in water extracts only. In contrast, only 3% of molecular features were lost in aqueous 50% ethanol extracts when subjected to oven drying. That is to say, ethanol used as a solvent has a stabilizing effect on metabolites and enhances their resistance to thermal transformation in the oven. Collectively, oven-drying of extracts was as effective as lyophilization in preserving metabolites in extracts only when 50% ethanol was used as a solvent. The results presented in this paper demonstrate the value of selecting solvent-appropriate post-extraction drying methods.
Antioxidant and tyrosinase inhibitory activities of traditional fermented Rosa from Dali Bai communities, Northwest Yunnan, China
Authors: Lang Bayi , Zhao Yanqiang , Yang Rong , Liu Aizhong , Ranjitkar Sailesh , Yang Lixin 
Published: November 2021

AbstractTraditional fermentedRosa(TFR) is a typical food and medical product among the Dali Bai people, and its popularity is growing. A few studies have looked into TFR's medicinal advantages, linked germplasm resources, traditional processing procedures, and functional food qualities. Our goal was to look intoRosa's traditional processing, examine the dominant strains in TFR, and prove how these strains affected antioxidant and tyrosinase inhibitory activities. We used a snowball selection strategy to pick 371 informants for a semi-structured interview, supplemented with direct observations and sample collection. A microbial strain was isolated and identified from a TFR sample collected in the field. We synthesized TFR in the lab using the traditional way. Both of 2, 2-diphenyl-1 picrylhydrazyl (DPPH) free radical scavenging and tyrosinase inhibitory properties of the fermented solution ofRosa'Dianhong' have been tested in this study. Altogether 15 species belonging to the genusRosa, which are utilized in herbal medicine and fermented foods.Rosa'Dianhong' was the Bai community's principal species with considerable cultural value and consumption. RawRosapetals included 15 major flavonoids and phenols, which were identified as TFR's active components. TFR-1 was discovered to be the dominating microbial strain in TFR, increasing total phenolic and flavonoid content in the fermented solution ofRosa'Dianhong' by 0.45 mg GAE/ml and 0.60 mg RE/ml, respectively, after 30 days. TFR-1 also exhibited promising activity in terms of DPPH free radical scavenging and tyrosinase inhibition. TFR showed potent antioxidant and free-radical scavenger properties and is beneficial in skincare and nutrition, according to the findings. TFR's medicinal and edible properties suggest that it could be used as a cosmetic or nutraceutical product.
Quercetin-treated rat sperm enables refrigerated transport with motility and fertility for five days
Authors: Yamaga Katsuma , Nakao Satohiro , Mikoda Nobuyuki , Yoshimoto Hidetaka , Nakatsukasa Ena , Nakagata Naomi , Takeo Toru 
Published: November 2021

AbstractShipment of laboratory rats between animal facilities is frequently performed using special containers. However, the shipment of live animals is associated with potential risks of infectious diseases, escape and death during shipment and animal welfare issues. The transport of cold-stored sperm avoids such risks; however, there have been no reports on cold storage of rat sperm. We previously reported that dimethyl sulfoxide (DMSO) and quercetin maintained the motility and fertilising abilities of cold-stored mouse sperm stored for 10 days. The present study investigated the efficacy of DMSO and quercetin in the cold storage of rat sperm. Quercetin maintained motility and fertility of cold-stored rat sperm stored for 5 days. After in vitro fertilisation using cold-stored sperm, pronuclear and two-cell embryos developed normally to pups following embryo transfer. Therefore, we demonstrated that live pups could be obtained from sperm transported using the cold-storage system. We conclude that cold storage of rat sperm may provide an efficient system for transporting rat resources as an alternative to shipping live animals.
Detecting immunotherapy-sensitive subtype in gastric cancer using histologic image-based deep learning
Authors: Hinata Munetoshi , Ushiku Tetsuo 
Published: November 2021

AbstractImmune checkpoint inhibitor (ICI) therapy is widely used but effective only in a subset of gastric cancers. Epstein–Barr virus (EBV)-positive and microsatellite instability (MSI) / mismatch repair deficient (dMMR) tumors have been reported to be highly responsive to ICIs. However, detecting these subtypes requires costly techniques, such as immunohistochemistry and molecular testing. In the present study, we constructed a histology-based deep learning model that aimed to screen this immunotherapy-sensitive subgroup efficiently. We processed whole slide images of 408 cases of gastric adenocarcinoma, including 108 EBV, 58 MSI/dMMR, and 242 other subtypes. Many images generated by data augmentation of the learning set were used for training convolutional neural networks to establish an automatic detection platform for EBV and MSI/dMMR subtypes, and the test sets of images were used to verify the learning outcome. Our model detected the subgroup (EBV + MSI/dMMR tumors) with high accuracy in test cases with an area under the curve of 0.947 (0.901–0.992). This result was slightly better than when EBV and MSI/dMMR tumors were detected separately. In an external validation cohort including 244 gastric cancers from The Cancer Genome Atlas database, our model showed a favorable result for detecting the “EBV + MSI/dMMR” subgroup with an AUC of 0.870 (0.809–0.931). In addition, a visualization of the trained neural network highlighted intraepithelial lymphocytosis as the ground for prediction, suggesting that this feature is a discriminative characteristic shared by EBV and MSI/dMMR tumors. Histology-based deep learning models are expected to be used for detecting EBV and MSI/dMMR gastric cancers as economical and less time-consuming alternatives, which may help to effectively stratify patients who respond to ICIs.
Bimanual digit training improves right-hand dexterity in older adults by reactivating declined ipsilateral motor-cortical inhibition
Authors: Naito Eiichi , Morita Tomoyo , Hirose Satoshi , Kimura Nodoka , Okamoto Hideya , Kamimukai Chikako , Asada Minoru 
Published: November 2021

AbstractImproving deteriorated sensorimotor functions in older individuals is a social necessity in a super-aging society. Previous studies suggested that the declined interhemispheric sensorimotor inhibition observed in older adults is associated with their deteriorated hand/finger dexterity. Here, we examined whether bimanual digit exercises, which can train the interhemispheric inhibitory system, improve deteriorated hand/finger dexterity in older adults. Forty-eight healthy, right-handed, older adults (65–78 years old) were divided into two groups, i.e., the bimanual (BM) digit training and right-hand (RH) training groups, and intensive daily training was performed for 2 months. Before and after the training, we evaluated individual right hand/finger dexterity using a peg task, and the individual state of interhemispheric sensorimotor inhibition by analyzing ipsilateral sensorimotor deactivation via functional magnetic resonance imaging when participants experienced a kinesthetic illusory movement of the right-hand without performing any motor tasks. Before training, the degree of reduction/loss of ipsilateral motor-cortical deactivation was associated with dexterity deterioration. After training, the dexterity improved only in the BM group, and the dexterity improvement was correlated with reduction in ipsilateral motor-cortical activity. The capability of the brain to inhibit ipsilateral motor-cortical activity during a simple right-hand sensory-motor task is tightly related to right-hand dexterity in older adults.
Excellent ballistic impact resistance of Al0.3CoCrFeNi multi-principal element alloy with unique bimodal microstructure
Authors: Muskeri Saideep , Gwalani Bharat , Jha Shristy , Yu Anqi , Jannotti Philip A. , Haridas Ravi Sankar , Schuster Brian E. , Lloyd Jeffrey T. , Mishra Rajiv S. , Mukherjee Sundeep 
Published: November 2021

AbstractMulti-principal element alloys represent a new paradigm in structural alloy design with superior mechanical properties and promising ballistic performance. Here, the mechanical response of Al0.3CoCrFeNi alloy, with unique bimodal microstructure, was evaluated at quasistatic, dynamic, and ballistic strain rates. The microstructure after quasistatic deformation was dominated by highly deformed grains. High density of deformation bands was observed at dynamic strain rates but there was no indication of adiabatic shear bands, cracks, or twinning. The ballistic response was evaluated by impacting a 12 mm thick plate with 6.35 mm WC projectiles at velocities ranging from 1066 to 1465 m/s. The deformed microstructure after ballistic impact was dominated by adiabatic shear bands, shear band induced cracks, microbands, and dynamic recrystallization. The superior ballistic response of this alloy compared with similar AlxCoCrFeNi alloys was attributed to its bimodal microstructure, nano-scale L12 precipitation, and grain boundary B2 precipitates. Deformation mechanisms at quasistatic and dynamic strain rates were primarily characterized by extensive dislocation slip and low density of stacking faults. Deformation mechanisms at ballistic strain rates were characterized by grain rotation, disordering of the L12 phase, and high density of stacking faults.
Preparations from selected cucurbit vegetables as antiplatelet agents
Authors: Rolnik Agata , Skalski Bartosz , Stochmal Anna , Olas Beata 
Published: November 2021

AbstractIncreased blood platelet activation plays an important role in cardiovascular diseases (CVDs). Recent experiments indicate that certain fruits and vegetables, including onion, garlic, and beetroot, have anti-platelet potential and therefore may reduce the likelihood of CVDs. While vegetables from theCucuritaceaefamily are known to exerting beneficial antioxidant and anti-inflammatory effects, their effects on blood platelet activation are poorly understood. Therefore, the aim of the present study was to determine the effect on platelet adhesion of preparations from selected cucurbits: pumpkin (Cucurbita pepo; fruit without seeds), zucchini (Cucurbita pepo convar. giromontina; fruit with seeds), cucumber (Cucumis sativus; fruit with seeds), white pattypan squash (Cucurbita pepo var. patisoniana; fruit without seeds) and yellow pattypan squash (Cucurbita pepo var. patisoniana,fruit without seeds). It also evaluates the activity of these preparations on enzymatic lipid peroxidation in thrombin-activated washed blood platelets by TBARS assay. The study also determines the anti-platelet properties of these five cucurbit preparations in whole blood by flow cytometry and with the total thrombus-formation analysis system (T-TAS) and evaluates the cytotoxicity of the tested preparations against platelets based on LDH activity. The results indicate that the yellowCucurbita pepo var. patisonianapreparation demonstrated stronger anti-platelet properties than the other tested preparations, reducing the adhesion of thrombin-activated platelets to collagen/fibrinogen, and inhibiting arachidonic acid metabolism and GPIIb/IIIa expression on 10 µM ADP-activated platelets. None of the preparations was found to cause platelet lysis. Our findings provide new information on the anti-platelet activity of the tested cucurbit preparations and their potential for treating CVDs associated with platelet hyperactivity.