bluuebunny/crossref_metadata_2025_split huggingface dataset:
Methods for calculating factors of safety for plant stems
Authors: Niklas Karl J. , Spatz Hanns-Christof 
Published: April 2021

ABSTRACT
The concept of a ‘factor of safety’ is used by biologists and engineers who generally agree that structures must be mechanically reliable, i.e. that structures must be capable of coping with unprecedented loads without failing. These factors can be calculated for individual structures or for a population of otherwise equivalent mechanical structures differing in their load capabilities. Objective methods for quantifying factors of safety for biological structures are nevertheless difficult to devise because (1) actual (working) loads are defined by environmental conditions that can vary widely, (2) breaking loads (capability) of otherwise mechanically equivalent structures can likewise vary as a result of developmental variation, and (3) specific criteria for failure must be determined a priori.
In this paper, we illustrate and discuss two methods for computing factors of safety for plants. One method works well for individual stems or entire plants, the other is useful when dealing with a population of conspecifics exhibiting a norm of reaction. Both methods require estimates of the actual and breaking bending (or torsional) moments experienced by stems, and both are amenable to dealing with any biologically reasonable criterion for failure. However, the two methods differ in terms of the assumptions made and the types of data that need to be gathered. The advantage of the first method is that it estimates the potential for survival of an individual stem or plant. The disadvantage is that it neglects natural variation among otherwise mechanically homologous individuals. The advantage of the second (statistical) approach is that it estimates the probability of survival of a population in a particular habitat. The disadvantage of this approach is that it sheds little light on the probability of an individual’s survival.
Mechanical design in arteries
Authors: Shadwick Robert E. 
Published: April 2021

ABSTRACT
The most important mechanical property of the artery wall is its non-linear elasticity. Over the last century, this has been well-documented in vessels in many animals, from humans to lobsters. Arteries must be distensible to provide capacitance and pulse-smoothing in the circulation, but they must also be stable to inflation over a range of pressure. These mechanical requirements are met by strain-dependent increases in the elastic modulus of the vascular wall, manifest by a J-shaped stress–strain curve, as typically exhibited by other soft biological tissues. All vertebrates and invertebrates with closed circulatory systems have arteries with this non-linear behaviour, but specific tissue properties vary to give correct function for the physiological pressure range of each species. In all cases, the non-linear elasticity is a product of the parallel arrangement of rubbery and stiff connective tissue elements in the artery wall, and differences in composition and tissue architecture can account for the observed variations in mechanical properties. This phenomenon is most pronounced in large whales, in which very high compliance in the aortic arch and exceptionally low compliance in the descending aorta occur, and is correlated with specific modifications in the arterial structure.
Templates and anchors: neuromechanical hypotheses of legged locomotion on land
Authors: Full R. J. , Koditschek D. E. 
Published: April 2021

ABSTRACT
Locomotion results from complex, high-dimensional, non-linear, dynamically coupled interactions between an organism and its environment. Fortunately, simple models we call templates have been and can be made to resolve the redundancy of multiple legs, joints and muscles by seeking synergies and symmetries. A template is the simplest model (least number of variables and parameters) that exhibits a targeted behavior. For example, diverse species that differ in skeletal type, leg number and posture run in a stable manner like sagittal- and horizontal-plane spring-mass systems. Templates suggest control strategies that can be tested against empirical data. Templates must be grounded in more detailed morphological and physiological models to ask specific questions about multiple legs, the joint torques that actuate them, the recruitment of muscles that produce those torques and the neural networks that activate the ensemble. We term these more elaborate models anchors. They introduce representations of specific biological details whose mechanism of coordination is of interest. Since mechanisms require controls, anchors incorporate specific hypotheses concerning the manner in which unnecessary motion or energy from legs, joints and muscles is removed, leaving behind the behavior of the body in the low-degree-of-freedom template. Locating the origin of control is a challenge because neural and mechanical systems are dynamically coupled and both play a role. The control of slow, variable-frequency locomotion appears to be dominated by the nervous system, whereas during rapid, rhythmic locomotion, the control may reside more within the mechanical system. Anchored templates of many-legged, sprawled-postured animals suggest that passive, dynamic self-stabilization from a feedforward, tuned mechanical system can reject rapid perturbations and simplify control. Future progress would benefit from the creation of a field embracing comparative neuromechanics.
Invertebrate paraxial locomotory appendages: design, deformation and control
Authors: Wootton Robin J. 
Published: April 2021

ABSTRACT
Some principles governing the design of invertebrate paired propulsive appendages are discussed, with particular reference to the extent to which information encoded in their skeletal structure determines their instantaneous shape in locomotion. The hydrostatic paired fins of some cephalopods and marine gastropods, polychaete parapodia and onychophoran lobopodia rely entirely on musculature for shape control. The deformations of walking limbs, though still under muscular control, are strongly influenced by the nature and sequence of movement of the joints. Limbs adapted for walking in air are effectively point-loaded, and their rigid components need to resist axial forces as well as bending and torsional moments. Aquatic walking limbs have little axial loading, while swimming appendages and wings experience only bending and torsional moments, and can exploit these to assist in the deformations that are necessary to gain force asymmetry between half-strokes. Swimming appendages normally employ both muscles and drag, but the wings of insects lack internal muscles, and their changes in shape are largely complex aeroelastic responses to the constantly changing aerodynamic and inertial loads, moderated by muscles inserted at the base. For illustration, wings modelled as thin shells with flexible hinge-lines are used to investigate how transverse distal flexion, essential for controlling the angle of attack in the upstroke, is remotely controlled by the indirect flight muscles.
Resonators in insect sound production: how insects produce loud pure-tone songs
Authors: Bennet-Clark H. C. 
Published: April 2021

ABSTRACT
In a resonant vibration, two reactive elements, such as a mass and a spring, interact: the resonant frequency depends on the magnitude of these two elements. The build-up and decay of the vibration depend on the way the resonator is driven and on the damping in the system.
The evidence for the existence of resonators in insect sound production is assessed. The mechanics of different types of sound-producing system found in insects is described. Mechanical frequency-multiplier mechanisms, which convert the relatively slow contraction of muscles to the higher frequency of the sound, are commonly used to convert the comparatively slow muscle contraction rate to the higher frequency of the sound. The phasing and rate of mechanical excitation may also affect the frequency and duration of the sound that is produced.
Although in many insects the song may appear to be produced by the excitation of a simple resonator, the song frequency may not be constant, suggesting that other factors, such as the mechanism of excitation, or variation of the effective mass or elasticity of the system during sound production, may be additional determinants of the song frequency.
Loud, and hence efficient, transduction of the energy of a mechanical resonator into sound may involve a second stage of transduction which, by damping the resonator, may compromise tonal purity. Some insect singers resolve this problem by tuning both stages of transduction to the same frequency, thereby maintaining tonal purity.
Scaling of echolocation call parameters in bats
Authors: Jones Gareth 
Published: April 2021

ABSTRACT
I investigated the scaling of echolocation call parameters (frequency, duration and repetition rate) in bats in a functional context. Low-duty-cycle bats operate with search phase cycles of usually less than 20 %. They process echoes in the time domain and are therefore intolerant of pulse–echo overlap. High-duty-cycle (&gt;30 %) species use Doppler shift compensation, and they separate pulse and echo in the frequency domain. Call frequency scales negatively with body mass in at least five bat families. Pulse duration scales positively with mass in low-duty-cycle quasi-constant-frequency (QCF) species because the large aerial-hawking species that emit these signals fly fast in open habitats. They therefore detect distant targets and experience pulse–echo overlap later than do smaller bats. Pulse duration also scales positively with mass in the Hipposideridae, which show at least partial Doppler shift compensation. Pulse repetition rate corresponds closely with wingbeat frequency in QCF bat species that fly relatively slowly. Larger, fast-flying species often skip pulses when detecting distant targets. There is probably a trade-off between call intensity and repetition rate because ‘whispering’ bats (and hipposiderids) produce several calls per predicted wingbeat and because batches of calls are emitted per wingbeat during terminal buzzes. Severe atmospheric attenuation at high frequencies limits the range of high-frequency calls. Low-duty-cycle bats that call at high frequencies must therefore use short pulses to avoid pulse–echo overlap. Rhinolophids escape this constraint by Doppler shift compensation and, importantly, can exploit advantages associated with the emission of both high-frequency and long-duration calls. Low frequencies are unsuited for the detection of small prey, and low repetition rates may limit prey detection rates. Echolocation parameters may therefore constrain maximum body size in aerial-hawking bats.
How muscles deal with real-world loads: the influence of length trajectory on muscle performance
Authors: Marsh Richard L. 
Published: April 2021

ABSTRACT
The performance of skeletal muscles in vivo is determined by the feedback received when the muscle interacts with the external environment via various morphological structures. This interaction between the muscle and the ‘real-world load’ forces us to reconsider how muscles are adapted to suit their in vivo function. We must consider the co-evolution of the muscles and the morphological structures that ‘create’ the load in concert with the properties of the external environment. This complex set of interactions may limit muscle performance acutely and may also constrain the evolution of morphology and physiology.
The performance of skeletal muscle is determined by the length trajectory during movement and the pattern of stimulation. Important features of the length trajectory include its amplitude, frequency, starting length and shape (velocity profile). Many of these parameters interact. For example, changing the velocity profile during shortening may change the optimum values of the other parameters.
The length trajectory that maximizes performance depends on the task to be performed. During cyclical work, muscles benefit from using asymmetric cycles with longer shortening than lengthening phases. Modifying this ‘sawtooth’ cycle by increasing the velocity during shortening may further increase power by augmenting force output and speeding deactivation. In contrast, when accelerating an inertial load, as in jumping, the predicted ‘optimal’ velocity profile has two peak values, one early and one late in shortening.
During level running at constant speed, muscles perform tasks other than producing work and power. Producing force to support the body weight is performed with nearly isometric contractions in some of the limb muscles of vertebrates. Muscles also play a key role in producing stability during running, and the intrinsic properties of the musculoskeletal system may be particularly important in stabilizing rapid running. Recently, muscles in running invertebrates and vertebrates have been described that routinely absorb large amounts of work during running. These muscles are hypothesized to play a key role in stability.
Fish swimming: patterns in muscle function
Authors: Altringham John D. , Ellerby David J. 
Published: April 2021

ABSTRACT
Undulatory swimming in fish is powered by the segmental body musculature of the myotomes. Power generated by this muscle and the interactions between the fish and the water generate a backward-travelling wave of lateral displacement of the body and caudal fin. The body and tail push against the water, generating forward thrust. The muscle activation and strain patterns that underlie body bending and thrust generation have been described for a number of species and show considerable variation. This suggests that muscle function may also vary among species. This variation must be due in large part to the complex interactions between muscle mechanical properties, fish body form, swimming mode, swimming speed and phylogenetic relationships. Recent work in several laboratories has been directed at studying patterns of muscle power output in vitro under simulated swimming conditions. This work suggests that the way that fish generate muscle power and convert it into thrust through the body and caudal fin does indeed vary. However, despite the differences, several features appear to be common to virtually all species studied and suggest where future effort should be directed if muscle function in swimming fish is to be better understood.
A mechanical analysis of myomere shape in fish
Authors: Leeuwen Johan L. Van 
Published: April 2021

ABSTRACT
An architectural analysis is offered of the trunk muscles in fish, which are arranged in a longitudinal series of geometrically complex myomeres. The myomeres are separated by myosepta, collagenous sheets with complex fibre patterns. The muscle fibres in the myomeres are also arranged in complex three-dimensional patterns. Previously, it has been proposed that the muscle fibre arrangement allows for a uniform strain distribution within the muscle. Physical constraints limit the range of shapes that fibre-reinforced materials such as muscles can adopt, irrespective of their genetic profile. The three-dimensional shapes of myosepta are predicted by mechanical modelling from the requirements for mechanical stability and prescribed muscle fibre arrangements. The model can also be used to study the force transmission and likely locations of ligaments and bones in the myosepta. The model shows that the dorsal and ventral fins are located such that unfavourable mechanical interactions with the trunk muscles are avoided. In bony fish, extensive muscular deformations (notably in the region of the horizontal septum) that would not contribute to bending are avoided by the mechanical support of the skin, intramuscular bones and ribs. In sharks, the skin plays a more prominent role in avoiding such deformations because of the absence of bony elements.
Aquatic vertebrate locomotion: wakes from body waves
Authors: Videler J. J. , Müller U. K. , Stamhuis E. J. 
Published: April 2021

ABSTRACT
Vertebrates swimming with undulations of the body and tail have inflection points where the curvature of the body changes from concave to convex or vice versa. These inflection points travel down the body at the speed of the running wave of bending. In movements with increasing amplitudes, the body rotates around the inflection points, inducing semicircular flows in the adjacent water on both sides of the body that together form proto-vortices. Like the inflection points, the proto-vortices travel towards the end of the tail. In the experiments described here, the phase relationship between the tailbeat cycle and the inflection point cycle can be used as a first approximation of the phase between the proto-vortex and the tailbeat cycle. Proto-vortices are shed at the tail as body vortices at roughly the same time as the inflection points reach the tail tip. Thus, the phase between proto-vortex shedding and tailbeat cycle determines the interaction between body and tail vortices, which are shed when the tail changes direction. The shape of the body wave is under the control of the fish and determines the position of vortex shedding relative to the mean path of motion. This, in turn, determines whether and how the body vortex interacts with the tail vortex. The shape of the wake and the contribution of the body to thrust depend on this interaction between body vortex and tail vortex. So far, we have been able to describe two types of wake. One has two vortices per tailbeat where each vortex consists of a tail vortex enhanced by a body vortex. A second, more variable, type of wake has four vortices per tailbeat: two tail vortices and two body vortices shed from the tail tip while it is moving from one extreme position to the next. The function of the second type is still enigmatic.
The novel aerodynamics of insect flight: applications to micro-air vehicles
Authors: Ellington C. P. 
Published: April 2021

ABSTRACT
The wing motion in free flight has been described for insects ranging from 1 to 100 mm in wingspan. To support the body weight, the wings typically produce 2–3 times more lift than can be accounted for by conventional aerodynamics. Some insects use the fling mechanism: the wings are clapped together and then flung open before the start of the downstroke, creating a lift-enhancing vortex around each wing. Most insects, however, rely on a leading-edge vortex (LEV) created by dynamic stall during flapping; a strong spanwise flow is also generated by the pressure gradients on the flapping wing, causing the LEV to spiral out to the wingtip. Technical applications of the fling are limited by the mechanical damage that accompanies repeated clapping of the wings, but the spiral LEV can be used to augment the lift production of propellers, rotors and micro-air vehicles (MAVs). Design characteristics of insect-based flying machines are presented, along with estimates of the mass supported, the mechanical power requirement and maximum flight speeds over a wide range of sizes and frequencies. To support a given mass, larger machines need less power, but smaller ones operating at higher frequencies will reach faster speeds.
Estimating power curves of flying vertebrates
Authors: Rayner Jeremy M. V. 
Published: April 2021

ABSTRACT
The power required for flight in any flying animal is a function of flight speed. The power curve that describes this function has become an icon of studies of flight mechanics and physiology because it encapsulates the accessible animal’s flight performance. The mechanical or aerodynamic power curve, describing the increase in kinetic energy of the air due to the passage of the bird, is necessarily U-shaped, for aerodynamic reasons, and can be estimated adequately by lifting-line theory. Predictions from this and related models agree well with measured mechanical work in flight and with results from flow visualization experiments. The total or metabolic power curve also includes energy released by the animal as heat, and is more variable in shape. These curves may be J-shaped for smaller birds and bats, but are difficult to predict theoretically owing to uncertainty about internal physiological processes and the efficiency of the flight muscles. The limitations of some existing models aiming to predict metabolic power curves are considered. The metabolic power curve can be measured for birds or bats flying in wind tunnels at controlled speeds. Simultaneous determination in European starlings Sturnus vulgaris of oxygen uptake, total metabolic rate (using labelled isotopes), aerodynamic power output and heat released (using digital video thermography) enable power curves to be determined with confidence; flight muscle efficiency is surprisingly low (averaging 15–18 %) and increases moderately with flight speed, so that the metabolic power curve is shallower than predicted by models. Accurate knowledge of the power curve is essential since extensive predictions of flight behaviour have been based upon it. The hypothesis that the power curve may not in fact exist, in the sense that the cost of flight may not be perceived by a bird as a continuous smooth function of air speed, is advanced but has not yet formally been tested. This hypothesis is considered together with evidence from variation in flight behaviour, wingbeat kinematics and flight gait with speed. Possible constraints on flight behaviour can be modelled by the power curves: these include the effect of a maximum power output and a constraint on maximum speed determined by downstroke wingbeat geometry and the relationship between thrust and lift.
Dominance hierarchy formation in juvenile crayfish procambarus clarkii
Authors: Issa Fadi A. , Adamson Daniel J. , Edwards Donald H. 
Published: April 2021

ABSTRACT
The formation of social dominance hierarchies was studied in groups of five juvenile crayfish, 1.3–1.8 cm in length. Animals were grouped together in a small, featureless aquarium after having lived in isolation for more than a month. The occurrence of each of four behavior patterns (‘attack’, ‘approach’, ‘retreat’ and ‘escape’) was recorded for each animal, together with the frequency of encounters and the frequency of wins and losses. The frequencies of wins and losses were used to calculate the relative dominance value of each animal in the group. High levels of fighting developed immediately upon grouping the animals, and a positive feedback relationship between attacking and winning enabled one animal in each group to emerge quickly as the superdominant. If that animal was the largest, it remained as the superdominant; otherwise, it was replaced as superdominant within the first few days by the largest animal. This form of dominance hierarchy, with one superdominant and four subordinates, persisted throughout the duration of the grouping. Fighting declined over the first hour and by 24 h had dropped to low levels. After the first day, approaches were used together with attacks, and retreats replaced escapes. Attack and approach were the behavior patterns displayed most frequently by animals with high dominance values, whereas retreat and escape were performed by animals of low dominance. All these trends continued to develop over the next 2 weeks as the number of agonistic encounters declined to a low level.