bluuebunny/crossref_metadata_2025_split huggingface dataset:
Genetic diversity associated with natural rubber quality in elite genotypes of the rubber tree
Authors: Sant’Anna Isabela de Castro , Gouvêa Ligia Regina Lima , Martins Maria Alice , Scaloppi Junior Erivaldo José , de Freitas Rogério Soares , Gonçalves Paulo de Souza 
Published: January 2021

AbstractThe objective of this study was to evaluate the genetic variability of natural rubber latex traits among 44 elite genotypes of the rubber tree [Hevea brasiliensis (Willd. ex Adr. de Juss.) Müell. Arg.]. Multivariate analysis and machine learning techniques were used, targeting the selection of parents that demonstrate superior characters. We analyzed traits related to technological or physicochemical properties of natural rubber latex, such as Wallace plasticity (P0), the plasticity retention index [PRI (%)], Mooney viscosity (VR), ash percentage (Ash), acetone extract percentage (AE), and nitrogen percentage (N), to study genetic diversity. Multivariate [unweighted pair group method with arithmetic means (UPGMA) and Tocher)] and machine learning techniques [K-means and Kohonen’s self-organizing maps (SOMs)] were employed. The genotypes showed high genetic variability for some of the evaluated traits. The traits PRI, Ash, and PO contributed the most to genetic diversity. The genotypes were classified into six clusters by the UPGMA method, and the results were consistent with the Tocher, K-means and SOM results. PRI can be used to improve the industrial potential of clones. The clones IAC 418 and PB 326 were the most divergent, followed by IAC 404 and IAC 56. These genotypes and others from the IAC 500 and 400 series could be used to start a breeding program. These combinations offer greater heterotic potential than the others, which can be used to improve components of rubber latex quality. Thus, it is important to consider the quality of rubber latex in the early stage of breeding programs.
Variation in size and shape of toxin glands among cane toads from native-range and invasive populations
Authors: Hudson Cameron M. , Brown Gregory P. , Blennerhassett Ryann A. , Shine Richard 
Published: January 2021

AbstractIf optimal investment in anti-predator defences depends on predation risk, invading new regions (and thus, encountering different predators) may favour shifts in that investment. Cane toads offer an ideal system to test this prediction: expensive anti-predator toxins are stored mainly in parotoid glands whose dimensions are easy to measure, and toad invasions have changed the suites of predators they encounter. Although plasticity may influence parotoid morphology, comparisons between parents and progeny revealed that gland dimensions were highly heritable. That heritability supports the plausibility of an evolved basis to variation in gland dimensions. Measurements of 3779 adult toads show that females have larger glands than males, invasive populations have larger glands than in the native-range, and that parotoid sexual size dimorphism varies strongly among invaded areas. Geographic variation in parotoid morphology may be driven by predation risk to both adult toads and offspring (provisioned with toxins by their mother), with toxins allocated to eggs exacerbating the risk of cannibalism but reducing the risk of interspecific predation. Investment into chemical defences has evolved rapidly during the cane toad’s international diaspora, consistent with the hypothesis that organisms flexibly adjust resource allocation to anti-predator tactics in response to novel challenges.
Inhibition of kinase IKKβ suppresses cellular abnormalities induced by the human papillomavirus oncoprotein HPV 18E6
Authors: Padash Barmchi Mojgan , Thomas Miranda , Thatte Jayashree V. , Vats Arushi , Zhang Bing , Cagan Ross L. , Banks Lawrence 
Published: January 2021

AbstractHuman papillomavirus (HPV) is the leading cause of cervical cancer and has been implicated in several other cancer types including vaginal, vulvar, penile, and oropharyngeal cancers. Despite the recent availability of a vaccine, there are still over 310,000 deaths each year worldwide. Current treatments for HPV-mediated cancers show limited efficacy, and would benefit from improved understanding of disease mechanisms. Recently, we developed a Drosophila ‘HPV 18 E6’ model that displayed loss of cellular morphology and polarity, junctional disorganization, and degradation of the major E6 target Magi; we further provided evidence that mechanisms underlying HPV E6-induced cellular abnormalities are conserved between humans and flies. Here, we report a functional genetic screen of the Drosophila kinome that identified IKK$$\beta$$
β
—a regulator of NF-κB—as an enhancer of E6-induced cellular defects. We demonstrate that inhibition of IKK$$\beta$$
β
reduces Magi degradation and that this effect correlates with hyperphosphorylation of E6. Further, the reduction in IKK$$\beta$$
β
suppressed the cellular transformation caused by the cooperative action of HPVE6 and the oncogenic Ras. Finally, we demonstrate that the interaction between IKK$$\beta$$
β
and E6 is conserved in human cells: inhibition of IKK$$\beta$$
β
blocked the growth of cervical cancer cells, suggesting that IKK$$\beta$$
β
may serve as a novel therapeutic target for HPV-mediated cancers.
Geographical influences on thyroid abnormalities in adult population from iodine-replete regions: a cross-sectional study
Authors: Wang Xiaofeng , Mo Zhe , Mao Guangming , Zhu Wenming , Xing Mingluan , Li Xueqing , Wang Yuanyang , Wang Zhifang , Lou Xiaoming 
Published: January 2021

AbstractThe studies on the increasing incidence of thyroid abnormalities are scarce. The aim of this current study was to ascertain the effects of geographical region on thyroid abnormalities under the context of universal salt iodization (USI). We randomly selected 1255 participants residing in inland and 1248 in coast, with the determination of urinary iodine concentration (UIC) and functional and morphological abnormalities of thyroid gland. The median UIC was significantly higher for the inland participants (188.5 μg/L) than the coastal participants (128.5 μg/L; p < 0.001), indicating iodine sufficiency in both populations according to the recommended assessment criteria by the World Health Organization. However, the spectrum of thyroid abnormalities varied between regions, with hypothyroidism prevalent in inland and thyroid nodules in coast. The associations between region and thyroid abnormalities via binary logistic regression models showed that the coastal participants were at a higher risk of total thyroid abnormalities than those from the inland (OR 1.216, 95% CI 1.020–1.449), after the adjustment of ten confounders (demographical characteristics, smoking status, metabolism syndrome, and hyperuricemia). These results indicated that further investigations of the adverse effects of hypothyroidism and thyroid nodules on health burden is urgently needed to sustain USI program.
Cloning, characterization, and functional analysis of acetyl-CoA C-acetyltransferase and 3-hydroxy-3-methylglutaryl-CoA synthase genes in Santalum album
Authors: Niu Meiyun , Yan Haifeng , Xiong Yuping , Zhang Yueya , Zhang Xinhua , Li Yuan , da Silva Jaime A. Teixeira , Ma Guohua 
Published: January 2021

AbstractSandalwood (Santalum album L.) is famous for its unique fragrance derived from the essential oil of heartwood, whose major components are santalols. To understand the mechanism underlying the biosynthesis of santalols, in this study, we cloned two related genes involved in the mevalonate pathway in S. album coding for acetyl-CoA C-acetyl transferase (AACT) and 3-hydroxy-3-methyglutary-CoA synthase (HMGS). These genes were characterized and functionally analyzed, and their expression profiles were also assessed. An AACT gene designated as SaAACT (GenBank accession No. MH018694) and a HMGS gene designated as SaHMGS (GenBank accession No. MH018695) were successfully cloned from S. album. The deduced SaAACT and SaHMGS proteins contain 415 and 470 amino acids, and the corresponding size of their open-reading frames is 1538 bp and 1807 bp, respectively. Phylogenetic trees showed that the SaAACT protein had the closest relationship with AACT from Hevea brasiliensis and the SaHMGS proteins had the highest homology with HMGS from Siraitia grosvenorii. Functional complementation of SaAACT and SaHMGS in a mutant yeast strain deficient in these proteins confirmed that SaAACT and SaHMGS cDNA encodes functional SaAACT and SaHMGS that mediate mevalonate biosynthesis in yeast. Tissue-specific expression analysis revealed that both genes were constitutively expressed in all examined tissues (roots, sapwood, heartwood, young leaves, mature leaves and shoots) of S. album, both genes showing highest expression in roots. After S. album seedlings were treated with 100 μM methyl jasmonate, the expression levels of SaAACT and SaHMGS genes increased, suggesting that these genes were responsive to this elicitor. These studies provide insight that would allow further analysis of the role of genes related to the sandalwood mevalonate pathway in the regulation of biosynthesis of sandalwood terpenoids and a deeper understanding of the molecular mechanism of santalol biosynthesis.
Molecular mechanism of the anti-inflammatory effects of Sophorae Flavescentis Aiton identified by network pharmacology
Authors: Zhu Naiqiang , Hou Jingyi 
Published: January 2021

AbstractInflammation, a protective response against infection and injury, involves a variety of biological processes. Sophorae Flavescentis (Kushen) is a promising Traditional Chinese Medicine (TCM) for treating inflammation, but the pharmacological mechanism of Kushen’s anti-inflammatory effect has not been fully elucidated. The bioactive compounds, predicted targets, and inflammation-related targets of Kushen were obtained from open source databases. The “Component-Target” network and protein–protein interaction (PPI) network were constructed, and hub genes were screened out by topological analysis. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed on genes in the PPI network. Furthermore, nitric oxide (NO) production analysis, RT-PCR, and western blot were performed to detect the mRNA and protein expression of hub genes in LPS-induced RAW264.7 cells. An immunofluorescence assay found that NF-κB p65 is translocated. A total of 24 bioactive compounds, 465 predicted targets, and 433 inflammation-related targets were identified and used to construct “Component-Targets” and PPI networks. Then, the five hub genes with the highest values-IL-6, IL-1β, VEGFA, TNF-α, and PTGS2 (COX-2)- were screened out. Enrichment analysis results suggested mainly involved in the NF-κB signaling pathway. Moreover, experiments were performed to verify the predicted results. Kushen may mediate inflammation mainly through the IL-6, IL-1β, VEGFA, TNF-α, and PTGS2 (COX-2), and the NF-κB signaling pathways. This finding will provide clinical guidance for further research on the use of Kushen to treat inflammation.
Intermittent hypoxia inhibits mandibular cartilage growth with reduced TGF-β and SOX9 expressions in neonatal rats
Authors: Lekvijittada Kochakorn , Hosomichi Jun , Maeda Hideyuki , Hong Haixin , Changsiripun Chidsanu , Kuma Yo-ichiro , Oishi Shuji , Suzuki Jun-ichi , Yoshida Ken-ichi , Ono Takashi 
Published: January 2021

AbstractIntermittent hypoxia (IH) has been associated with skeletal growth. However, the influence of IH on cartilage growth and metabolism is unknown. We compared the effects of IH on chondrocyte proliferation and maturation in the mandibular condyle fibrocartilage and tibial hyaline cartilage of 1-week-old male Sprague–Dawley rats. The rats were exposed to normoxic air (n = 9) or IH at 20 cycles/h (nadir, 4% O2; peak, 21% O2; 0% CO2) (n = 9) for 8 h each day. IH impeded body weight gain, but not tibial elongation. IH also increased cancellous bone mineral and volumetric bone mineral densities in the mandibular condylar head. The mandibular condylar became thinner, but the tibial cartilage did not. IH reduced maturative and increased hypertrophic chondrocytic layers of the middle and posterior mandibular cartilage. PCR showed that IH shifted proliferation and maturation in mandibular condyle fibrocartilage toward hypertrophic differentiation and ossification by downregulating TGF-β and SOX9, and upregulating collagen X. These effects were absent in the tibial growth plate hyaline cartilage. Our results showed that neonatal rats exposed to IH displayed underdeveloped mandibular ramus/condyles, while suppression of chondrogenesis marker expression was detected in the growth-restricted condylar cartilage.
Neural correlates of affective contributions to lexical decisions in children and adults
Authors: Sylvester Teresa , Liebig Johanna , Jacobs Arthur M. 
Published: January 2021

AbstractThe goal of the present study was to investigate whether 6–9-year old children and adults show similar neural responses to affective words. An event-related neuroimaging paradigm was used in which both age cohorts performed the same auditory lexical decision task (LDT). The results show similarities in (auditory) lexico-semantic network activation as well as in areas associated with affective information. In both age cohorts’ activations were stronger for positive than for negative words, thus exhibiting a positivity superiority effect. Children showed less activation in areas associated with affective information in response to all three valence categories than adults. Our results are discussed in the light of computational models of word recognition, and previous findings of affective contributions to LDT in adults.
Implicit Theory of Mind under realistic social circumstances measured with mobile eye-tracking
Authors: Kulke Louisa , Hinrichs Max Andreas Bosse 
Published: January 2021

AbstractRecently, there has been a debate whether implicit Theory of Mind can be reliably measured using anticipatory looking tasks. Previous anticipatory looking paradigms used video stimuli to measure implicit Theory of Mind; however, numerous replications of these paradigms were unsuccessful. This lack of replications may be due to video stimuli not being sufficiently engaging. As Theory of Mind is an inherently social phenomenon, robust evidence might only be observed in a real social situation. Therefore, the current preregistered study aimed to test anticipatory looking with real-life social stimuli. A mobile eye-tracker was used to measure gaze patterns indicative of Theory of Mind while participants observed a real-life interaction of an experimenter and a confederate. The realistic scenario did not provide clear evidence for implicit Theory of Mind. Furthermore, anticipatory looking behavior did not reliably occur during familiarization trials, in line with previous research. However, looking patterns were slightly more in line with belief tracking than in some more controlled studies using video stimuli. In general, implicit Theory of Mind was not reliably reflected in anticipatory looking patterns even if they were measured in realistic social situations. This questions the suitability of anticipatory looking measures for implicit Theory of Mind.
Maternal tadalafil therapy for fetal growth restriction prevents non-alcoholic fatty liver disease and adipocyte hypertrophy in the offspring
Authors: Kawamura Takuya , Tanaka Hiroaki , Tachibana Ryota , Yoshikawa Kento , Maki Shintaro , Toriyabe Kuniaki , Takeuchi Hiroki , Katsuragi Shinji , Tanaka Kayo , Ikeda Tomoaki 
Published: January 2021

AbstractWe aimed to investigate the effects of maternal tadalafil therapy on fetal programming of metabolic function in a mouse model of fetal growth restriction (FGR). Pregnant C57BL6 mice were divided into the control, L-NG-nitroarginine methyl ester (L-NAME), and tadalafil + L-NAME groups. Six weeks after birth, the male pups in each group were given a high-fat diet. A glucose tolerance test (GTT) was performed at 15 weeks and the pups were euthanized at 20 weeks. We then assessed the histological changes in the liver and adipose tissue, and the adipocytokine production. We found that the non-alcoholic fatty liver disease activity score was higher in the L-NAME group than in the control group (p < 0.05). Although the M1 macrophage numbers were significantly higher in the L-NAME/high-fat diet group (p < 0.001), maternal tadalafil administration prevented this change. Moreover, the epididymal adipocyte size was significantly larger in the L-NAME group than in the control group. This was also improved by maternal tadalafil administration (p < 0.05). Further, we found that resistin levels were significantly lower in the L-NAME group compared to the control group (p < 0.05). The combination of exposure to maternal L-NAME and a high-fat diet induced glucose impairment and non-alcoholic fatty liver disease. However, maternal tadalafil administration prevented these complications. Thus, deleterious fetal programming caused by FGR might be modified by in utero intervention with tadalafil.
Functional connectome differences in individuals with hallucinations across the psychosis continuum
Authors: Schutte Maya J. L. , Bohlken Marc M. , Collin Guusje , Abramovic Lucija , Boks Marco P. M. , Cahn Wiepke , Dauwan Meenakshi , van Dellen Edwin , van Haren Neeltje E. M. , Hugdahl Kenneth , Koops Sanne , Mandl René C. W. , Sommer Iris E. C. 
Published: January 2021

AbstractHallucinations may arise from an imbalance between sensory and higher cognitive brain regions, reflected by alterations in functional connectivity. It is unknown whether hallucinations across the psychosis continuum exhibit similar alterations in functional connectivity, suggesting a common neural mechanism, or whether different mechanisms link to hallucinations across phenotypes. We acquired resting-state functional MRI scans of 483 participants, including 40 non-clinical individuals with hallucinations, 99 schizophrenia patients with hallucinations, 74 bipolar-I disorder patients with hallucinations, 42 bipolar-I disorder patients without hallucinations, and 228 healthy controls. The weighted connectivity matrices were compared using network-based statistics. Non-clinical individuals with hallucinations and schizophrenia patients with hallucinations exhibited increased connectivity, mainly among fronto-temporal and fronto-insula/cingulate areas compared to controls (P < 0.001 adjusted). Differential effects were observed for bipolar-I disorder patients with hallucinations versus controls, mainly characterized by decreased connectivity between fronto-temporal and fronto-striatal areas (P = 0.012 adjusted). No connectivity alterations were found between bipolar-I disorder patients without hallucinations and controls. Our results support the notion that hallucinations in non-clinical individuals and schizophrenia patients are related to altered interactions between sensory and higher-order cognitive brain regions. However, a different dysconnectivity pattern was observed for bipolar-I disorder patients with hallucinations, which implies a different neural mechanism across the psychosis continuum.
Automation of absolute protein-ligand binding free energy calculations for docking refinement and compound evaluation
Authors: Heinzelmann Germano , Gilson Michael K. 
Published: January 2021

AbstractAbsolute binding free energy calculations with explicit solvent molecular simulations can provide estimates of protein-ligand affinities, and thus reduce the time and costs needed to find new drug candidates. However, these calculations can be complex to implement and perform. Here, we introduce the software BAT.py, a Python tool that invokes the AMBER simulation package to automate the calculation of binding free energies for a protein with a series of ligands. The software supports the attach-pull-release (APR) and double decoupling (DD) binding free energy methods, as well as the simultaneous decoupling-recoupling (SDR) method, a variant of double decoupling that avoids numerical artifacts associated with charged ligands. We report encouraging initial test applications of this software both to re-rank docked poses and to estimate overall binding free energies. We also show that it is practical to carry out these calculations cheaply by using graphical processing units in common machines that can be built for this purpose. The combination of automation and low cost positions this procedure to be applied in a relatively high-throughput mode and thus stands to enable new applications in early-stage drug discovery.
Functional constipation induces bladder overactivity associated with upregulations of Htr2 and Trpv2 pathways
Authors: Iguchi Nao , Carrasco Alonso , Xie Alison X. , Pineda Ricardo H. , Malykhina Anna P. , Wilcox Duncan T. 
Published: January 2021

AbstractBladder and bowel dysfunction (BBD) is a common yet underdiagnosed paediatric entity that describes lower urinary tract symptoms (LUTS) accompanied by abnormal bowel patterns manifested as constipation and/or encopresis. LUTS usually manifest as urgency, urinary frequency, incontinence, and urinary tract infections (UTI). Despite increasing recognition of BBD as a risk factor for long-term urinary tract problems including recurrent UTI, vesicoureteral reflux, and renal scarring, the mechanisms underlying BBD have been unclear, and treatment remains empirical. We investigated how constipation affects the lower urinary tract function using a juvenile murine model of functional constipation. Following four days of functional constipation, animals developed LUTS including urinary frequency and detrusor overactivity evaluated by awake cystometry. Physiological examination of detrusor function in vitro using isolated bladder strips, demonstrated a significant increase in spontaneous contractions without affecting contractile force in response to electrical field stimulation, carbachol, and KCl. A significant upregulation of serotonin receptors, Htr2a and Htr2c, was observed in the bladders from mice with constipation, paralleled with augmented spontaneous contractions after pre-incubation of the bladder strips with 0.5 µM of serotonin. These results suggest that constipation induced detrusor overactivity and increased excitatory serotonin receptor activation in the urinary bladder, which contributes to the development of BBD.
Faint trace of a particle in a noisy Vaidman three-path interferometer
Authors: Dajka Jerzy 
Published: January 2021

AbstractWe study weak traces of particle passing Vaidman’s nested Mach–Zehnder interferometer. We investigate an effect of decoherence caused by an environment coupled to internal degree of freedom (a spin) of a travelling particle. We consider two models: pure decoherence leading to exact results and weak coupling Davies approximation allowing to include dissipative effects. We show that potentially anomalous discontinuity of particle paths survives an effect of decoherence unless it affects internal part of the nested interferometer.