bluuebunny/crossref_metadata_2025_split huggingface dataset:
The m6A methylome of SARS-CoV-2 in host cells
Authors: Liu Jun’e , Xu Yan-Peng , Li Kai , Ye Qing , Zhou Hang-Yu , Sun Hanxiao , Li Xiaoyu , Yu Liu , Deng Yong-Qiang , Li Rui-Ting , Cheng Meng-Li , He Bo , Zhou Jia , Li Xiao-Feng , Wu Aiping , Yi Chengqi , Qin Cheng-Feng 
Published: January 2021

AbstractThe newly identified Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has resulted in a global health emergency because of its rapid spread and high mortality. The molecular mechanism of interaction between host and viral genomic RNA is yet unclear. We demonstrate herein that SARS-CoV-2 genomic RNA, as well as the negative-sense RNA, is dynamically N6-methyladenosine (m6A)-modified in human and monkey cells. Combined RIP-seq and miCLIP analyses identified a total of 8 m6A sites at single-base resolution in the genome. Especially, epidemic strains with mutations at these identified m6A sites have emerged worldwide, and formed a unique cluster in the US as indicated by phylogenetic analysis. Further functional experiments showed that m6A methylation negatively regulates SARS-CoV-2 infection. SARS-CoV-2 infection also triggered a global increase in host m6A methylome, exhibiting altered localization and motifs of m6A methylation in mRNAs. Altogether, our results identify m6A as a dynamic epitranscriptomic mark mediating the virus–host interaction.
Processing light with an optically tunable mechanical memory
Authors: Lake David P. , Mitchell Matthew , Sukachev Denis D. , Barclay Paul E. 
Published: January 2021

AbstractMechanical systems are one of the promising platforms for classical and quantum information processing and are already widely-used in electronics and photonics. Cavity optomechanics offers many new possibilities for information processing using mechanical degrees of freedom; one of them is storing optical signals in long-lived mechanical vibrations by means of optomechanically induced transparency. However, the memory storage time is limited by intrinsic mechanical dissipation. More over, in-situ control and manipulation of the stored signals processing has not been demonstrated. Here, we address both of these limitations using a multi-mode cavity optomechanical memory. An additional optical field coupled to the memory modifies its dynamics through time-varying parametric feedback. We demonstrate that this can extend the memory decay time by an order of magnitude, decrease its effective mechanical dissipation rate by two orders of magnitude, and deterministically shift the phase of a stored field by over 2π. This further expands the information processing toolkit provided by cavity optomechanics.
CD4 derived double negative T cells prevent the development and progression of nonalcoholic steatohepatitis
Authors: Sun Guangyong , Zhao Xinyan , Li Mingyang , Zhang Chunpan , Jin Hua , Li Changying , Liu Liwei , Wang Yaning , Shi Wen , Tian Dan , Xu Hufeng , Tian Yue , Wu Yongle , Liu Kai , Zhang Zhongtao , Zhang Dong 
Published: January 2021

AbstractHepatic inflammation is the driving force for the development and progression of NASH. Treatment targeting inflammation is believed to be beneficial. In this study, adoptive transfer of CD4+T cells converted double negative T cells (cDNT) protects mice from diet-induced liver fat accumulation, lobular inflammation and focal necrosis. cDNT selectively suppress liver-infiltrating Th17 cells and proinflammatory M1 macrophages. IL-10 secreted by M2 macrophages decreases the survival and function of cDNT to protect M2 macrophages from cDNT-mediated lysis. NKG2A, a cell inhibitory molecule, contributes to IL-10 induced apoptosis and dampened suppressive function of cDNT. In conclusion, ex vivo-generated cDNT exert potent protection in diet induced obesity, type 2 diabetes and NASH. The improvement of outcome is due to the inhibition on liver inflammatory cells. This study supports the concept and the feasibility of potentially utilizing this autologous immune cell-based therapy for the treatment of NASH.
Ion adsorption-induced reversible polarization switching of a van der Waals layered ferroelectric
Authors: Xu Dong-Dong , Ma Ru-Ru , Fu Ai-Ping , Guan Zhao , Zhong Ni , Peng Hui , Xiang Ping-Hua , Duan Chun-Gang 
Published: January 2021

AbstractSolid-liquid interface is a key concept of many research fields, enabling numerous physical phenomena and practical applications. For example, electrode-electrolyte interfaces with electric double layers have been widely used in energy storage and regulating physical properties of functional materials. Creating a specific interface allows emergent functionalities and effects. Here, we show the artificial control of ferroelectric-liquid interfacial structures to switch polarization states reversibly in a van der Waals layered ferroelectric CuInP2S6 (CIPS). We discover that upward and downward polarization states can be induced by spontaneous physical adsorption of dodecylbenzenesulphonate anions and N,N-diethyl-N-methyl-N-(2-methoxyethyl)-ammonium cations, respectively, at the ferroelectric-liquid interface. This distinctive approach circumvents the structural damage of CIPS caused by Cu-ion conductivity during electrical switching process. Moreover, the polarized state features super-long retention time (>1 year). The interplay between ferroelectric dipoles and adsorbed organic ions has been studied systematically by comparative experiments and first-principles calculations. Such ion adsorption-induced reversible polarization switching in a van der Waals ferroelectric enriches the functionalities of solid-liquid interfaces, offering opportunities for liquid-controlled two-dimensional ferroelectric-based devices.
Fast operando spectroscopy tracking in situ generation of rich defects in silver nanocrystals for highly selective electrochemical CO2 reduction
Authors: Wu Xinhao , Guo Yanan , Sun Zengsen , Xie Fenghua , Guan Daqin , Dai Jie , Yu Fengjiao , Hu Zhiwei , Huang Yu-Cheng , Pao Chih-Wen , Chen Jeng-Lung , Zhou Wei , Shao Zongping 
Published: January 2021

AbstractElectrochemical CO2 reduction (ECR) is highly attractive to curb global warming. The knowledge on the evolution of catalysts and identification of active sites during the reaction is important, but still limited. Here, we report an efficient catalyst (Ag-D) with suitable defect concentration operando formed during ECR within several minutes. Utilizing the powerful fast operando X-ray absorption spectroscopy, the evolving electronic and crystal structures are unraveled under ECR condition. The catalyst exhibits a ~100% faradaic efficiency and negligible performance degradation over a 120-hour test at a moderate overpotential of 0.7 V in an H-cell reactor and a current density of ~180 mA cm−2 at −1.0 V vs. reversible hydrogen electrode in a flow-cell reactor. Density functional theory calculations indicate that the adsorption of intermediate COOH could be enhanced and the free energy of the reaction pathways could be optimized by an appropriate defect concentration, rationalizing the experimental observation.
Fabrication of fluorescent nanospheres by heating PEGylated tetratyrosine nanofibers
Authors: Gallo Enrico , Diaferia Carlo , Balasco Nicole , Sibillano Teresa , Roviello Valentina , Giannini Cinzia , Vitagliano Luigi , Morelli Giancarlo , Accardo Antonella 
Published: January 2021

AbstractAromatic polypeptides have recently drawn the interest of the research community for their capability to self-assemble into a variety of functional nanostructures. Due to their interesting mechanical, electrical and optical properties, these nanostructures have been proposed as innovative materials in different biomedical, biotechnological and industrial fields. Recently, several efforts have been employed in the development of these innovative materials as nanoscale fluorescence (FL) imaging probes. In this context, we describe the synthesis and the functional properties of a novel fluorescent tyrosine (Tyr, Y)-based nanospheres, obtained by heating at 200 °C a solution of the PEGylated tetra-peptide PEG6-Y4. At room temperature, this peptide self-assembles into not fluorescent low ordered water-soluble fibrillary aggregates. After heating, the aggregation of different polyphenolic species generates Y4-based nanospheres able to emit FL into blue, green and red spectral regions, both in solution and at the solid state. The aggregation features of PEG6-Y4 before and after heating were studied using a set of complementary techniques (Fluorescence, CD, FT-IR, Small and Wide-Angle X-ray Scattering and SEM). After a deep investigation of their optoelectronic properties, these nanospheres could be exploited as promising tools for precise biomedicine in advanced nanomedical technologies (local bioimaging, light diagnostics, therapy, optogenetics and health monitoring).
Visualization of microwave near-field distribution in sodium chloride and glucose aqueous solutions by a thermo-elastic optical indicator microscope
Authors: Baghdasaryan Zhirayr , Babajanyan Arsen , Odabashyan Levon , Lee Jung-Ha , Friedman Barry , Lee Kiejin 
Published: January 2021

AbstractIn this study, a new optical method is presented to determine the concentrations of NaCl and glucose aqueous solutions by using a thermo-elastic optical indicator microscope. By measuring the microwave near-field distribution intensity, concentration changes of NaCl and glucose aqueous solutions were detected in the 0–100 mg/ml range, when exposed to microwave irradiation at 12 GHz frequency. Microwave near-field distribution intensity decreased as the NaCl or glucose concentration increased due to the changes of the absorption properties of aqueous solution. This method provides a novel approach for monitoring NaCl and glucose in biological liquids by using a CCD sensor capable of visualizing NaCl and glucose concentrations without scanning.
The loading effect of Pt clusters on Pt/graphene nano sheets catalysts
Authors: Siburian Rikson , Ali Ab Malik Marwan , Sebayang Kerista , Supeno Minto , Tarigan Kerista , Simanjuntak Crystina , Aritonang Sri Pratiwi , Hutagalung Fajar 
Published: January 2021

AbstractIn this paper, we report about chemically interaction between Pt Subnano-Clusters on Graphene Nano Sheets (GNS). The aim of this research is to clarify the size effect of Pt clusters on Pt 1–7 wt.%/GNS. This research is an experimental laboratory research. GNS was synthesized by using modified Hummer’s method and 1–7 wt.% Pt/GNS were prepared with impregnation method. Then, they were analyzed with TG/DTA, XRD, TEM and XPS, respectively. The results show that Pt clusters are well deposited on GNS (TG/DTA and TEM data). Those data also are consistent with XRD data. The weak and broad peaks appear at 2θ = 39°, indicating Pt metal exists on GNS. The state of Pt is confirmed by using XPS. The appearance of Pt 4f. peaks proves that Pt metal is chemical interaction on GNS. The size of Pt clusters may affect the chemically properties of Pt/GNS catalysts.
Metformin exerts anti-cancerogenic effects and reverses epithelial-to-mesenchymal transition trait in primary human intrahepatic cholangiocarcinoma cells
Authors: Di Matteo Sabina , Nevi Lorenzo , Overi Diletta , Landolina Nadine , Faccioli Jessica , Giulitti Federico , Napoletano Chiara , Oddi Andrea , Marziani Augusto M. , Costantini Daniele , De Rose Agostino M. , Melandro Fabio , Bragazzi Maria C. , Grazi Gian Luca , Berloco Pasquale B. , Giuliante Felice , Donato Giuseppe , Moretta Lorenzo , Carpino Guido , Cardinale Vincenzo , Gaudio Eugenio , Alvaro Domenico 
Published: January 2021

AbstractIntrahepatic cholangiocarcinoma (iCCA) is a highly aggressive cancer with marked resistance to chemotherapeutics without therapies. The tumour microenvironment of iCCA is enriched of Cancer-Stem-Cells expressing Epithelial-to-Mesenchymal Transition (EMT) traits, being these features associated with aggressiveness and drug resistance. Treatment with the anti-diabetic drug Metformin, has been recently associated with reduced incidence of iCCA. We aimed to evaluate the anti-cancerogenic effects of Metformin in vitro and in vivo on primary cultures of human iCCA. Our results showed that Metformin inhibited cell proliferation and induced dose- and time-dependent apoptosis of iCCA. The migration and invasion of iCCA cells in an extracellular bio-matrix was also significantly reduced upon treatments. Metformin increased the AMPK and FOXO3 and induced phosphorylation of activating FOXO3 in iCCA cells. After 12 days of treatment, a marked decrease of mesenchymal and EMT genes and an increase of epithelial genes were observed. After 2 months of treatment, in order to simulate chronic administration, Cytokeratin-19 positive cells constituted the majority of cell cultures paralleled by decreased Vimentin protein expression. Subcutaneous injection of iCCA cells previously treated with Metformin, in Balb/c-nude mice failed to induce tumour development. In conclusion, Metformin reverts the mesenchymal and EMT traits in iCCA by activating AMPK-FOXO3 related pathways suggesting it might have therapeutic implications.
The effects of short-term light exposure on subjective affect and comfort are dependent on the lighting time of day
Authors: Chen Lijun , Yan Fang-Fang , Fan Shuhan , Wu Yifan , Yang Jia , Yang Hua , Huang Chang-Bing 
Published: January 2021

AbstractLight, one of the key environmental components for both life and work, played significant role in subjective feelings (e.g. affect and comfort), but the exact effects and mechanisms were still to be determined. The present study screened thirty healthy adults (13 females, 22.45 ± 3.26 years) and examined subjective affect and comfort under short-term white lights with different combination of correlated color temperature (CCT) and illuminance at different times of day (e.g. morning, afternoon, and evening). Our results showed a significant interaction between illuminance level and time-of-day on subjective comfort. Participants felt more comfortable under 50 lx and 100 lx instead of 500 lx in the evening, and more comfortable under 500 lx in the morning and afternoon. In addition, a positive correlation between illuminance and comfort in the morning and a negative correlation between them in the evening were found. No significant effect of CCT on any subjective feeling was revealed. Our results necessitate the consideration of time-of-day in understanding lighting effects and application of healthy lighting in daily life.
Screening for potential targets to reduce stenosis in bioprosthetic heart valves
Authors: Foth Rudi , Shomroni Orr , Sigler Matthias , Hörer Jürgen , Cleuziou Julie , Paul Thomas , Eildermann Katja 
Published: January 2021

AbstractProgressive stenosis is one of the main factors that limit the lifetime of bioprosthetic valved conduits. To improve long-term performance we aimed to identify targets that inhibit pannus formation on conduit walls. From 11 explanted, obstructed, RNAlater presevered pulmonary valved conduits, we dissected the thickened conduit wall and the thin leaflet to determine gene expression-profiles using ultra deep sequencing. Differential gene expression between pannus and leaflet provided the dataset that was screened for potential targets. Promising target candidates were immunohistologically stained to see protein abundance and the expressing cell type(s). While immunostainings for DDR2 and FGFR2 remained inconclusive, EGFR, ErbB4 and FLT4 were specifically expressed in a subset of tissue macrophages, a cell type known to regulate the initiation, maintenance, and resolution of tissue repair. Taken toghether, our data suggest EGFR, ErbB4 and FLT4 as potential target candidates to limit pannus formation in bioprosthestic replacement valves.
Systematic profiling of the effective ingredients and mechanism of Scabiosa comosa and S. tschilliensis against hepatic fibrosis combined with network pharmacology
Authors: Chen Qianwen , Wang Yuanyuan , Ma Feixiang , Han Mengdi , Wang Zhen , Xue Peifeng , Lu Jingkun 
Published: January 2021

AbstractScabiosa comosa and S. tschilliensis (SCST) are traditionally used for liver diseases in Mongolian medicine. However, their active ingredients and molecular mechanisms are unknown. The present study employed network pharmacology and experimental verification approaches to decipher the common pharmacological mechanisms of SCST on liver fibrosis, which is the key step in liver diseases. We predicted the targets of all available SCST ingredients with the SWISS and SuperPred servers and clustered the targets related to liver fibrosis from DrugBank, the OMIM database and the literature. We further evaluated the links between the herbal ingredients and pharmacological actions to explore the potential mechanism of action of SCST. We found that the PPARG signalling pathway could be regulated by SCST for liver fibrosis through enrichment analysis. The key targets included 8 co-targets, including HSP90AA1, PPARG, HSP90AB1, STAT1, etc., which play pivotal roles in the pathogenesis of liver fibrosis. Additionally, the top 15 key compounds included flavonoids and phenylpropanoids. Central to the pathogenesis of liver fibrosis is trans-differentiation or activation of hepatic stellate cells (HSCs). Therefore, LX2 cells, an immortalized human HSC line, were studied. Here, a total 37 components were isolated and identified from the inflorescences of SCST, including the new compound tschilliensisin, and the first separated components, β-sitosterol and luteolin, and these compounds were assessed against anti-hepatic fibrosis. An MTT assay and quantitative real-time polymerase chain reaction (qRT-PCR) and Western blotting analyses demonstrated that the flavonoids of SCST revealed anti-hepatic fibrosis effects via anti-proliferation and increases in the Stat1, Pparg, Hsp90aa1 genes and STAT1 and PPARG proteins in LX-2 cells. In conclusion, these results indicate that SCST has multi-targeted and multi-component synergistic anti-hepatic fibrosis effects.
Body mass index and cancer risk in patients with type 2 diabetes: a dose–response meta-analysis of cohort studies
Authors: Soltani Sepideh , Abdollahi Shima , Aune Dagfinn , Jayedi Ahmad 
Published: January 2021

AbstractAlthough obesity has been associated with an increased cancer risk in the general population, the association in patients with type 2 diabetes (T2D) remains controversial. We conducted a dose–response meta-analysis of cohort studies of body mass index (BMI) and the risk of total and site-specific cancers in patients with T2D. A systematic literature search was conducted in PubMed, Scopus, and Medline until September 2020 for cohort studies on the association between BMI and cancer risk in patients with T2D. Summary relative risks (RRs) and 95% confidence intervals (CIs) were calculated using random effects models. Ten prospective and three retrospective cohort studies (3,345,031 participants and 37,412 cases) were included in the meta-analysis. Each 5-unit increase in BMI (kg/m2) was associated with a 6% higher risk of total cancer (RR: 1.06, 95% CI 1.01, 1.10; I2 = 55.4%, n = 6), and with a 12% increased risk in the analysis of breast cancer (RR: 1.12, 95% CI 1.05, 1.20; I2 = 0%, n = 3). The pooled RRs showed no association with prostate cancer (RR: 1.02, 95% CI 0.92, 1.13; I2 = 64.6%, n = 4), pancreatic cancer (RR: 0.97, 95% CI 0.84, 1.11; I2 = 71%, n = 3), and colorectal cancer (RR: 1.05, 95% CI 0.98, 1.13; I2 = 65.9%, n = 2). There was no indication of nonlinearity for total cancer (Pnon-linearity = 0.99), however, there was evidence of a nonlinear association between BMI and breast cancer (Pnon-linearity = 0.004) with steeper increases in risk from a BMI around 35 and above respectively. Higher BMI was associated with a higher risk of total, and breast cancer but not with risk of other cancers, in patients with T2D, however, further studies are needed before firm conclusions can be drawn.
Hybrid model for ecological vulnerability assessment in Benin
Authors: Dossou Jacqueline Fifame , Li Xu Xiang , Sadek Mohammed , Sidi Almouctar Mohamed Adou , Mostafa Eman 
Published: January 2021

AbstractIdentifying ecologically fragile areas by assessing ecosystem vulnerability is an essential task in environmental conservation and management. Benin is considered a vulnerable area, and its coastal zone, which is subject to erosion and flooding effects, is particularly vulnerable. This study assessed terrestrial ecosystems in Benin by establishing a hybrid ecological vulnerability index (EVI) for 2016 that combined a composite model based on principal component analysis (PCA) with an additive model based on exposure, sensitivity and adaptation. Using inverse distance weighted (IDW) interpolation, point data were spatially distributed by their geographic significance. The results revealed that the composite system identified more stable and vulnerable areas than the additive system; the two systems identified 48,600 km2 and 36,450 km2 of stable areas, respectively, for a difference of 12,150 km2, and 3,729 km2 and 3,007 km2 of vulnerable areas, for a difference of 722 km2. Using Moran’s I and automatic linear modeling, we improved the accuracy of the established systems. In the composite system, increases of 11,669 km2 in the potentially vulnerable area and 1,083 km2 in the highly vulnerable area were noted in addition to a decrease of 4331 km2 in the potential area; while in the additive system, an increase of 3,970 km2 in the highly vulnerable area was observed. Finally, southern Benin was identified as vulnerable in the composite system, and both northern and southern Benin were identified as vulnerable in the additive system. However, regardless of the system, Littoral Province in southern Benin, was consistently identified as vulnerable, while Donga Province was stable.
Protective effects of growth hormone-releasing hormone analogs in DSS-induced colitis in mice
Authors: Recinella Lucia , Chiavaroli Annalisa , Di Valerio Valentina , Veschi Serena , Orlando Giustino , Ferrante Claudio , Gesmundo Iacopo , Granata Riccarda , Cai Renzhi , Sha Wei , Schally Andrew V. , Lattanzio Rossano , Brunetti Luigi , Leone Sheila 
Published: January 2021

AbstractBesides its metabolic and endocrine effects, growth hormone (GH)-releasing hormone (GHRH) is involved in the modulation of inflammation. Recently synthetized GHRH antagonist MIA-690 and MR-409, GHRH agonist, developed by us have shown potent pharmacological effects in various experimental paradigms. However, whether their administration modify resistance to chronic inflammatory stimuli in colon is still unknown. Ex vivo results demonstrated that MIA-690 and MR-409 inhibited production of pro-inflammatory and oxidative markers induced by lipopolysaccharide on isolated mouse colon specimens. In vivo, both MIA-690 and MR-409 have also been able to decrease the responsiveness to nociceptive stimulus, in hot plate test. Additionally, both peptides also induced a decreased sensitivity to acute and persistent inflammatory stimuli in male mice, in formalin test and dextran sodium sulfate (DSS)-induced colitis model, respectively. MIA-690 and MR-409 attenuate DSS-induced colitis with particular regard to clinical manifestations, histopathological damage and release of pro-inflammatory and oxidative markers in colon specimens. Respect to MR-409, MIA-690 showed higher efficacy in inhibiting prostaglandin (PG)E2, 8-iso-PGF2α and serotonin (5-HT) levels, as well as tumor necrosis factor (TNF)-α, interleukin (IL)-6 and nitric oxide synthase gene expression in colon specimens of DSS-induced colitis. Furthermore, MIA-690 decreased serum insulin-like growth factor (IGF)-1 levels in mice DSS-treated, respect to MR-409. Thus, our findings highlight the protective effects of MIA-690 and MR-409 on inflammation stimuli. The higher antinflammatory and antioxidant activities observed with MIA-690 could be related to decreased serum IGF-1 levels.