bluuebunny/crossref_metadata_2025_split huggingface dataset:
A zebrafish retinoic acid receptor expressed in the regenerating caudal fin
Authors: White Jay A. , Boffa Michael B. , Jones Barbara , Petkovich Martin 
Published: April 2021

ABSTRACT
Retinoic acid (RA) is an important signalling molecule in vertebrate pattern formation both in developing and regenerating tissues. The effects of RA are due largely to regulation of gene transcription, mediated by retinoic acid receptors (RAR-α, RAR-β, RAR-γ) and retinoid X receptors (RXR-α, RXR-β, RXR-γ). We have been using zebrafish as a model of regeneration to study the role of retinoic acid and its receptors in vertebrate pattern formation. In this report, we describe the molecular cloning and characterization of one of the zebrafish RARs that is the predominant receptor in the regenerating caudal fin and corresponds most closely to the RAR-γ subtype isolated from mouse and human and to RAR-δ from newt. Zebrafish RAR-γ (zfRAR-γ) exhibits both structural and functional conservation with its mammalian counterparts. Studies utilizing both normal and regenerating caudal fins of the zebrafish have indicated that it is the RAR-γ subtype, compared to RAR-α or RAR-β, which is expressed at the highest levels in the tail fin. To localize the expression pattern of RAR-γ during fin regeneration, we have carried out whole-mount in situ hybridization. ZfRAR-γ transcripts, during fin regeneration, are localized in the blastemal tissue formed at the distal ends of the bony rays following amputation. Treatment of fish with RA during fin regeneration induces a number of striking morphological effects on the regenerate. When amputations are performed distal to the branch points or dichotomies, where a single ray bifurcates to extend two individual ‘daughter’ rays, RA treatment causes a dichotomy reduction where the two ‘daughter’ rays fuse to once again form a single ray. The single ray subsequently bifurcates in a comparatively normal manner. Our data suggest that exogenous RA can respecify pattern in the regenerating caudal fin and identifies the blastemae as possible RA target tissues.
Heterochronic effects of glossy15 mutations on epidermal cell identity in maize
Authors: Evans Matthew M. S. , Passas Hildrun J. , Poethig R. Scott 
Published: April 2021

ABSTRACT
Vegetative development in maize is divided into a juvenile phase and an adult phase that differ in the expression of a large number of morphological, anatomical, and biochemical traits. Recessive mutations of Glossy15 cause a premature switch in the expression of some of these phase-specific traits. Mutant plants cease producing juvenile traits (e.g. epicuticular wax) and begin to produce adult traits (e.g. epidermal hairs) significantly earlier than their wild-type siblings. In glossy15-1 plants this switch generally occurs at leaf 2 or 3 rather than at the normal position of leaf 6 or 7. An analysis of the effect of glossy15 mutations on a variety of vegetative and reproductive traits revealed that these mutations only affect the character of the epidermis. They have no effect on the overall vegetative morphology of the plant, or on its reproductive development. This phenotype is the opposite of that of the gain-of-function mutations Teopod1, Teopod2 and Teopod3, all of which prolong the expression of a large number of juvenile traits. Double mutants between glossy15 and Teopod1 or Teopod2 indicate that Glossy15 is required for the effect of Teopod1 and Teopod2 on epidermal traits but not for other aspects of the Teopod phenotype. We conclude that Glossy15 initiates or maintains the expression of juvenile epidermal traits and suppresses the expression of adult epidermal traits, and that it acts downstream of the Teopod genes.
Cis-acting regulatory sequences governing Wnt-1 expression in the developing mouse CNS
Authors: Echelard Yann , Vassileva Galya , McMahon Andrew P. 
Published: April 2021

ABSTRACT
The protooncogene Wnt-1 encodes a short-range signal which is first expressed in, and appears to demarcate, the presumptive midbrain. Absence of Wnt-1 expression leads to the loss of this region of the brain. By the end of neural tube closure, expression of Wnt-1 extends down much of the dorsal midline of the central nervous system (CNS). Expression is exclusively limited to the CNS at this and later stages. We have investigated the regulation of Wnt-1 during mouse development. Analysis of the embryonic expression of Wnt-1-lacZ reporter constructs spanning nearly 30 kb of the Wnt-1 locus identified a 5.5 kb cis-acting 3′ enhancer element which confers correct temporal and spatial expression on the lacZ gene. Interestingly embryos express Wnt-1-lacZ transgenes in migrating neural crest cells which are derived from the dorsal CNS. Ectopic expression of the Wnt-1-lacZ transgenes may result from perdurance of β-galactosidase activity in migrating neural crest cells originating from a Wnt-1-expressing region of the dorsal CNS. Alternatively, ectopic expression may arise from transient de novo activation of the transgenes in this cell population. These results are a first step towards addressing how regional cell signaling is established in the mammalian CNS. In addition, transgene expression provides a new tool for the analysis of neural crest development in normal and mutant mouse embryos.
Slow emergence of a multithreshold response to activin requires cell-contact-dependent sharpening but not prepattern
Authors: Green Jeremy B. A. , Smith J. C. , Gerhart John C. 
Published: April 2021

ABSTRACTThe growth factor activin elicits mesodermal fates when applied to prospective ectodermal cells of the Xenopus blastula stage embryo. Previous experiments with dissoci-ated cells showed that there are at least five different responses separated by closely spaced, sharp dose thresh-olds. Here we investigate this multithreshold activin response further using probes for genes expressed at early gastrula stages, namely Xbra, goosecoid, noggin, Xwnt-8 and Mix.1. We show that initial dose-response profiles are broad and smooth in contrast to the later threshold-bound patterns. For Xbra, goosecoid and noggin, the later expression ranges are subsets of earlier ones. Unexpectedly, Xwnt-8 is initially induced at high doses only, but later appears only in cells that have received a low dose of activin. Keeping the cells dissociated after activin treatment, rather than allowing them to reaggregate, prevents sustained expression of Xbra and Xwnt-8 but allows that of goosecoid and noggin. However, cell contact is required for sharpening the dose-response threshold of goosecoid. Finally, we show that a previously reported dorsoventral prepattern in the animal cap is also cell-contact dependent and it is not required for the multi-threshold response to activin.
Misexpression of the Drosophila argos gene, a secreted regulator of cell determination
Authors: Freeman Matthew 
Published: April 2021

ABSTRACT
I have examined the effects on cells in the developing eye of over-expressing the argos gene. Transgenic flies carrying argos expressed under hsp70 and sevenless control sequences were analysed. All cell types in the developing eye (except bristles) are sensitive to argos concentration: over-expression leads to too few cells forming, the opposite phenotype to that seen in argos loss-of-function mutants. This effect was only seen with HS-argos flies: sev-argos flies, which over-express the protein at a lower level are not affected, suggesting that a considerable over-expression is required to disrupt cell fate. However, sev-argos is able to rescue argos eye mutations completely, indicating that the normal expression pattern is not critical for wild-type eye development. By transfecting argos into tissue culture cells, I show that the protein is secreted in a soluble form.
Morphological differences in Xenopus embryonic mesodermal cells are specified as an early response to distinct threshold concentrations of activin
Authors: Symes Karen , Yordán Cristina , Mercola Mark 
Published: April 2021

ABSTRACT
The involution of presumptive mesoderm that occurs during amphibian gastrulation is a complex process requiring the coordinated action of a diverse range of cells. We show that cells with distinct morphologies, resembling each of those normally found in the involuting tissue of the Xenopus embryo, are induced in dispersed animal pole cells by different doses of the potent mesoderm-inducing factor activin. Each cell type is induced within a restricted dose range of activin concentrations, the boundaries of which are well demarcated shortly after activin treatment. In contrast, Brachyury and goosecoid, two genes thought to pattern the presumptive mesoderm, and the gene encoding platelet-derived growth factor receptor α, which is expressed in the mesoderm of gastrula stage embryos, are induced by broad, overlapping ranges of high activin con- centrations at such early times. Similarly, the response of the gene encoding platelet-derived growth factor A, which is expressed normally in ectoderm of gastrula stage embryos, diminishes gradually as the activin concentration increases. Dose windows for the expression of these four genes narrow and become distinct from one another in cell aggregates after several hours in culture, suggesting that activin prompts a dynamic program of gene expression in induced mesoderm.
Ectopic Hoxa-1 induces rhombomere transformation in mouse hindbrain
Authors: Zhang Maobin , Kim Hee-Joong , Marshall Heather , Gendron-Maguire Maureen , Lucas Debra A. , Baron Agnès , Gudas Lorraine J. , Gridley Thomas , Krumlauf Robb , Grippo Joseph F. 
Published: April 2021

ABSTRACT
Homeobox genes are expressed with a specific spatial and temporal order, which is essential for pattern formation during the early development of both invertebrates and vertebrates. Here we show that widespread ectopic expression of the Hoxa-1 (Hox 1.6) gene directed by a human β-actin promoter in transgenic mice is embry-olethal and produces abnormal phenotypes in a subset of domains primarily located in anterior regions. Interestingly, this abnormal development in the Hoxa-1 transgenic mice is associated with ectopic expression of the Hoxb-1 (Hox 2.9) gene in select hindbrain regions. At gestation day 9.5, two domains of strong Hoxb-1 expression are found in the anterior region of the hindbrains of Hoxa-1 transgenic embryos. One region represents the normal pattern of Hoxb-1 expression in rhombomere 4 and its associated migrating neural crest cells, while another major domain of Hoxb-1 expression consistently appears in rhombomere 2. Similar ectopic domains of β-galactosidase activity are detected in dual transgenic embryos containing both β-actin/Hoxa-1 transgene and a Hoxb-1/lacZ reporter construct. Expression of another lacZ reporter gene that directs β-galactosidase activity predominately in rhombomere 2 is suppressed in the Hoxa-1 transgenic embryos. We have also detected weaker and variable ectopic Hoxb-1 expression in rhombomeres 1, 3 and 6. No ectopic Hoxb-1 expression is detected in rhombomere 5 and the expression of Hoxa-3 and Krox-20 in this region is unchanged in the Hoxa-1 transgenic embryos. While no obvious change in the morphology of the trigeminal or facial-acoustic ganglia is evident, phenotypic changes do occur in neurons that emanate from rhombomeres 2 and 3 in the Hoxa-1 transgenic embryos. Additionally, alterations in the pattern of Hoxa-2 and Hoxb-1 expression in a sub-population of neural crest cells migrating from the rhombomere 2 region are detected in these transgenics. Taken together, these data suggest that ectopic Hoxa-1 expression can reorganize select regions of the developing hindbrain by inducing partial transformations of several rhombomeres into a rhombomere-4-like identity.
Microtubule arrays of the zebrafish yolk cell: organization and function during epiboly
Authors: Solnica-Krezel Lilianna , Driever Wolfgang 
Published: April 2021

ABSTRACT
In zebrafish (Danio rerio), meroblastic cleavages generate an embryo in which blastomeres cover the animal pole of a large yolk cell. At the 500-1000 cell stage, the marginal blastomeres fuse with the yolk cell forming the yolk syncytial layer. During epiboly the blastoderm and the yolk syncytial layer spread toward the vegetal pole. We have studied developmental changes in organization and function during epiboly of two distinct microtubule arrays located in the cortical cytoplasm of the yolk cell. In the anuclear yolk cytoplasmic layer, an array of microtubules extends along the animal-vegetal axis to the vegetal pole. In the early blastula the yolk cytoplasmic layer microtubules appear to originate from the marginal blastomeres. Once formed, the yolk syncytial layer exhibits its own network of intercrossing mitotic or interphase microtubules. The microtubules of the yolk cytoplasmic layer emanate from the microtubule network of the syncytial layer.
At the onset of epiboly, the external yolk syncytial layer narrows, the syncytial nuclei become tightly packed and the network of intercrossing microtubules surrounding them becomes denser. Soon after, there is a vegetal expansion of the blastoderm and of the yolk syncytial layer with its network of intercrossing microtubules. Concomitantly, the yolk cytoplasmic layer diminishes and its set of animal-vegetal microtubules becomes shorter.
We investigated the involvement of microtubules in epiboly using the microtubule depolymerizing agent nocodazole and a stabilizing agent taxol. In embryos treated with nocodazole, microtubules were absent and epibolic movements of the yolk syncytial nuclei were blocked. In contrast, the vegetal expansion of the enveloping layer and deep cells was only partially inhibited. The process of endo-cytosis, proposed to play a major role in epiboly of the yolk syncytial layer (Betchaku, T. and Trinkaus, J. P. (1986) Am. Zool. 26, 193-199), was still observed in nocodazole-treated embryos. Treatment of embryos with taxol led to a delay in all epibolic movements.
We propose that the yolk cell microtubules contribute either directly or indirectly to all epibolic movements. However, the epibolic movements of the yolk syncytial layer nuclei and of the blastoderm are not coupled, and only movements of the yolk syncytial nuclei are absolutely dependent on microtubules. We hypothesize that the microtubule network of the syncytial layer and the animal-vegetal set of the yolk cytoplasmic layer contribute differently to various aspects of epiboly. Models that address the mechanisms by which the two microtubule arrays might function during epiboly are discussed.
Clonal relationships and cell patterning in the root epidermis of Arabidopsis
Authors: Dolan Liam , Duckett Catherine M. , Grierson Claire , Linstead Paul , Schneider Katharina , Lawson Emily , Dean Caroline , Poethig Scott , Roberts Keith 
Published: April 2021

ABSTRACT
The development of the post-embryonic root epidermis of Arabidopsis thaliana is described. Clonal analysis has identified three sets of initials that give rise to the columella root cap cells, epidermis and lateral root-cap cells, and the cells of the cortex and endodermis respectively. The mature epidermis is composed of two cell types, root hair cells (derived from trichoblasts) and non-hair cells (derived from atrichoblasts). These cells are arranged in sixteen or more discrete files. Each hair cell file overlies the anticlinal (radial) wall of the underlying cortical cells and is separated from the next by one or two non-hair files. The root hair forms as a tip-growing projection from the basal end of the trichoblast i.e. the end nearest the root meristem. The non-hair epidermal cells are significantly longer than the hair forming cells and are located over the outer peri-clinal (tangential) wall of the underlying cortical cells. The size difference between the two cell types is apparent in the cell division zone before hairs form. This suggests that the signals required for the differentiation of the root epidermis function in the meristem itself. Ectopic hairs are present in the ctr1 root epidermis suggesting that a Raf protein kinase may play a role in pattern formation/differentiation in the root epidermis and that ethylene may be a diffusible signal involved in specifying pattern in the root epidermis.
Avian marginal zone cells function as primitive streak inducers only after their migration into the hypoblast
Authors: Eyal-Giladi Hefzibah , Lotan Tamar , Levin Tovi , Avner Orit , Hochman Jacob 
Published: April 2021

ABSTRACT
Hypoblast cells of posterior marginal zone origin have been shown previously to be the inducers of primitive streak in the avian embryo. Here we checked: (1) whether the above cells acquire their inductivity while still whithin the marginal zone; (2) can inductivity be found in supernatants of defined blastodermic regions; (3) can differences in the electrophoretic pattern be shown between inducing and non-inducing tissue fragments and their conditioned media, which might give a clue as to what the inductive substance is.
The following observations were made: 1.(a) Stage X chick posterior marginal zone cells prior to their migration into the hypoblast do not induce a primitive streak, when applied to a stage XIII competent epiblast central disc. (b) A posterior marginal zone fragment, when applied to an epiblast central disc, even after being preincubated for up to 9 hours in vitro, is still non-inductive. (c) Mechanically fragmented stage X posterior marginal zones when applied as a layer to epiblast central discs are non-inductive. (d) Hypoblastic tissue in strip form induces a primitive streak.2.Competent stage XIII epiblast central discs (chick) were incubated for 2 hours in supernatants of stage XIII epiblasts or hypoblasts. Whereas no inductive effect was exerted by the epiblast supernatant, primitive streaks developed in about 50% of the epiblast central discs incubated in the hypoblast supernatant.3.Electrophoretic analysis (quails) reveals a protein of 28×10—3 Mr that is enriched in both hypoblastic tissue and its incubation medium and not in the epiblast + marginal zone + area opaca and their incubation medium. These findings suggest a possible correlation between this protein and the induction process.
Molecular characterisation of the Polycomblike gene of Drosophila melanogaster, a trans-acting negative regulator of homeotic gene expression
Authors: Lonie Andrew , D’Andrea Richard , Paro Renato , Saint Robert 
Published: April 2021

ABSTRACT
The Polycomblike gene of Drosophila melanogaster, a member of the Polycomb Group of genes, is required for the correct spatial expression of the homeotic genes of the Antennapaedia and Bithorax Complexes. Mutations in Polycomb Group genes result in ectopic homeotic gene expression, indicating that Polycomb Group proteins maintain the transcriptional repression of specific homeotic genes in specific tissues during development. We report here the isolation and molecular characterisation of the Polycomblike gene. The Polycomblike transcript encodes an 857 amino acid protein with no significant homology to other proteins. Antibodies raised against the product of this open reading frame were used to show that the Polycomb-like protein is found in all nuclei during embryonic development. Antibody staining also revealed that the Polycomblike protein is found on larval salivary gland polytene chromosomes at about 100 specific loci, the same loci to which the Polycomb and polyhomeotic proteins, two other Polycomb Group proteins, are found. These data add further support for a model in which Polycomb Group proteins form multimeric protein complexes at specific chromosomal loci to repress transcription at those loci.
Restoration of the organizer after radical ablation of Hensen’s node and the anterior primitive streak in the chick embryo
Authors: Psychoyos Delphine , Stern Claudio D. 
Published: April 2021

ABSTRACT
The region of the amniote embryo corresponding to Spemann’s organizer in amphibians is Hensen’s node, which lies at the tip of the primitive streak during gastrulation. It is a special site in the embryo that can be defined by the presence of progenitors of several axial tissues (notochord, prechordal mesoderm, somites, gut endoderm), by characteristic cell movements, by specific patterns of gene expression (e.g. goosecoid, HNF-3β, Sonic hedgehog) and, most importantly, by its ability to induce a complete axis, including host-derived neural tissue, when transplanted to an ectopic site.
Here, we show that complete removal not only of the node but also of the anterior 40% of the primitive streak leads to the development of normal embryos containing cells with all the fates normally produced by the node. Cell movement pathways through the regenerated node are identical to those seen in the normal embryo. The patterns of expression of HNF-3β and Sonic hedgehog are also restored, as is their left/right asymmetry, but goosecoid expression is not. When the regenerated node is transplanted to an ectopic site, it induces a complete embryonic axis that includes a fully patterned, host-derived central nervous system.
Analysis of the properties of cells surrounding the site of ablation shows that they acquire these properties gradually. We suggest that the organizer is a region of the embryo that is defined by cell interactions and that the node normally inhibits the organizer state in neighbouring cells.
The Dictyostelium dual-specificity kinase splA is essential for spore differentiation
Authors: Nuckolls Glen H. , Osherov Nir , Loomis William F. , Spudich James A. 
Published: April 2021

ABSTRACT
We have studied the structure and function of the Dictyostelium kinase splA. A truncated form of the splA protein exhibited primarily tyrosine kinase activity in vitro; however, it also autophosphorylated on serine and threonine residues. The kinase domain of splA exhibits approximately 38% identity to the CTR1 kinase of Arabidopsis, which is a member of the Raf family. Outside its kinase domain, splA shares homology with the byr2 kinase of S. pombe. By aligning the sequences of splA, byr2 and STE11, a homologue of byr2 in S. cerevisiae, we have identified a conserved motif that is also found in members of the Eph family of growth factor receptor tyrosine kinases. SplA is expressed throughout development with a peak during the mound stage of morphogenesis. Strains in which the splA gene had been disrupted completed fruiting body formation; however, spore cells spontaneously lysed before completing their differentiation. Northern analysis revealed the expression of the prespore marker cotB and the prestalk markers ecmA and ecmB in the mutant strain during development. The spore differentiation marker spiA was detected in the mutant spores both by northern and immunoblotting, but these cells failed to assemble spore coats. Immunoblot analysis of the developmental pattern of tyrosine phosphorylation revealed a protein that was phosphorylated in mutants but was not phosphorylated in the wild-type cells. SplA is a novel dual specificity kinase that regulates the differentiation of spore cells.