bluuebunny/crossref_metadata_2025_split huggingface dataset:
Intraoperative free margins assessment of oropharyngeal squamous cell carcinoma with confocal laser endomicroscopy: a pilot study
Authors: Sievert Matti , Stelzle Florian , Aubreville Marc , Mueller Sarina K. , Eckstein Markus , Oetter Nicolai , Maier Andreas , Mantsopoulos Konstantinos , Iro Heinrich , Goncalves Miguel 
Published: February 2021

Abstract
Purpose
This pilot study aimed to assess the feasibility of intraoperative assessment of safe margins with confocal laser endomicroscopy (CLE) during oropharyngeal squamous cell carcinoma (OPSCC) surgery.

Methods
We included five consecutive patients confirmed OPSCC and planned tumor resection in September and October 2020. Healthy appearing mucosa in the marginal zone, and the tumor margin, were examined with CLE and biopsy during tumor resection. A total of 12,809 CLE frames were correlated with the gold standard of hematoxylin and eosin staining. Three head and neck surgeons and one pathologist were asked to identify carcinoma in a sample of 169 representative images, blinded to the histological results.

Results
Healthy mucosa showed epithelium with uniform size and shape with distinct cytoplasmic membranes and regular vessel architecture. CLE optical biopsy of OPSCC demonstrated a disorganized arrangement of variable cellular morphology. We calculated an accuracy, sensitivity, specificity, PPV, and NPV of 86%, 90%, 79%, 88%, and 82%, respectively, with inter-rater reliability and κ-value of 0.60.

Conclusion
CLE can be easily integrated into the intraoperative setting, generate real-time, in-vivo microscopic images of the oropharynx for evaluation and demarcation of cancer. It can eventually contribute to a less radical approach by enabling a more precise evaluation of the cancer margin.
Development of an AAV9-RNAi-mediated silencing strategy to abrogate TRPM4 expression in the adult heart
Authors: Medert Rebekka , Jungmann Andreas , Hildebrand Staffan , Busch Martin , Grimm Dirk , Flockerzi Veit , Müller Oliver J. , Most Patrick , Schumacher Dagmar , Freichel Marc 
Published: February 2021

AbstractThe cation channel transient receptor potential melastatin 4 (TRPM4) is a calcium-activated non-selective cation channel and acts in cardiomyocytes as a negative modulator of the L-type Ca2+ influx. Global deletion of TRPM4 in the mouse led to increased cardiac contractility under β-adrenergic stimulation. Consequently, cardiomyocyte-specific inactivation of the TRPM4 function appears to be a promising strategy to improve cardiac contractility in heart failure patients. The aim of this study was to develop a gene therapy approach in mice that specifically silences the expression of TRPM4 in cardiomyocytes. First, short hairpin RNAmiR30 (shRNAmiR30) sequences against the TRPM4 mRNA were screened in vitro using lentiviral transduction for a stable expression of the shRNA cassettes. Western blot analysis identified three efficient shRNAmiR30 sequences out of six, which reduced the endogenous TRPM4 protein level by up to 90 ± 6%. Subsequently, the most efficient shRNAmiR30 sequences were delivered into cardiomyocytes of adult mice using adeno-associated virus serotype 9 (AAV9)-mediated gene transfer. Initially, the AAV9 vector particles were administered via the lateral tail vein, which resulted in a downregulation of TRPM4 by 46 ± 2%. Next, various optimization steps were carried out to improve knockdown efficiency in vivo. First, the design of the expression cassette was streamlined for integration in a self-complementary AAV vector backbone for a faster expression. Compared to the application via the lateral tail vein, intravenous application via the retro-orbital sinus has the advantage that the vector solution reaches the heart directly and in a high concentration, and eventually a TRPM4 knockdown efficiency of 90 ± 7% in the heart was accomplished by this approach. By optimization of the shRNAmiR30 constructs and expression cassette as well as the route of AAV9 vector application, a 90% reduction of TRPM4 expression was achieved in the adult mouse heart. In the future, AAV9-RNAi-mediated inactivation of TRPM4 could be a promising strategy to increase cardiac contractility in preclinical animal models of acute and chronic forms of cardiac contractile failure.
Post-magmatic fracturing, fluid flow, and vein mineralization in supra-subduction zones: a comparative study on vein calcites from the Troodos ophiolite and the Izu–Bonin forearc and rear arc
Authors: Quandt Dennis , Kurz W. , Micheuz P. 
Published: February 2021

AbstractBased on the published data of pillow lava-hosted mineralized veins, this study compares post-magmatic fracturing, fluid flow, and secondary mineralization processes in the Troodos and Izu–Bonin supra-subduction zone (SSZ) and discusses the crucial factors for the development of distinct vein types. Thin section and cathodoluminescence petrography, Raman spectroscopy, fluid inclusion microthermometry, and trace element and isotope (87Sr/86Sr, δ18O, δ13C, Δ47) geochemistry indicate that most veins consist of calcite that precipitated from pristine to slightly modified seawater at temperatures < 50 °C. In response to the mode of fracturing, fluid supply, and mineral growth dynamics, calcites developed distinct blocky (precipitation into fluid-filled fractures), syntaxial (crack and sealing), and antitaxial (diffusion-fed displacive growth) vein microtextures with vein type-specific geochemical signatures. Blocky veins predominate in all study areas, whereas syntaxial veins represent subordinate structures. Antitaxial veins occur in all study areas but are particularly abundant in the Izu–Bonin rear arc where the local geological setting was conducive of antitaxial veining. The temporal framework of major calcite veining coincides with the onset of extensional faulting in the respective areas and points to a tectonic control on veining. Thus, major calcite veining in the Troodos SSZ began contemporaneously with volcanic activity and extensional faulting and completed within ~ 10–20 Myr. This enabled deep seawater downflow and hydrothermal fluid upflow. In the Izu–Bonin forearc, reliable ages of vein calcites point to vein formation > 15 Myr after subduction initiation. Therefore, high-T mineralization (calcite, quartz, analcime) up to 230 °C is restricted to the Troodos SSZ.
Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
Authors: Tian Bin , Cai Dongjie , Li Weiqiang , Bu Qinglong , Wang Mingshu , Ye Gang , Liu Jianzhu , Wang Ya , Gou Liping , Yi Jun , Zuo Zhicai 
Published: February 2021

AbstractIn 2019, diarrhea cases occurred on cattle farms in Qionglai and Guang'an, Sichuan Province. Two out of 20 (10%) serum and nasal swab samples were positive when tested using a bovine viral diarrhea virus (BVDV) antigen-capture ELISA kit. Two non-cytopathic strains of BVDV were isolated and named QL1903 and GA190608, respectively. The nucleotide sequences of the genomes of the two isolates were 89.52% identical. Phylogenetic analysis based on the 5'-UTR sequence revealed that the BVDV isolate QL1903 belonged to BVDV subtype 1b, whereas isolate GA190608 clustered with strains HN1814, EN-19, and BJ09_26 in a separate branch, which has tentatively been classified as a new genetic subtype, "1v".
Paleoproteomic profiling of organic residues on prehistoric pottery from Malta
Authors: Tanasi Davide , Cucina Annamaria , Cunsolo Vincenzo , Saletti Rosaria , Di Francesco Antonella , Greco Enrico , Foti Salvatore 
Published: February 2021

AbstractMass spectrometry-based approaches have been successfully applied for identifying ancient proteins in bones and other tissues. On the contrary, there are relatively few examples of the successful recovery and identification of archeological protein residues from ceramic artifacts; this is because ceramics contain much lower levels of proteins which are extensively degraded by diagenetic effects. In this paper, we report the results of the characterization of proteins extracted from pottery of the Maltese site of Baħrija, the guide-site for the Baħrija period (half of 9th–second half of eighth century BCE), recently identified as the final part of the Borġ in-Nadur culture. Proteomic data here reported confirm that one of the major issue of these kind of studies is represented by contamination of animal and human agents that may complicate endogenous protein identification and authentication. The samples tested included a small group of ceramic forms, namely three tableware and six coarse ware thought to have been used in food preparation and/or storage. In this context, the limited availability of paleobotanical and archeozoological analyses may be compensated by the outcomes of the first proteomics profiling which, even if obtained on a limited selection of vessels, revealed the centrality of wheat in the diet of the ancient community of Baħrija. The data have been deposited to the ProteomeXchange with identifier < PXD022848 > .
Cache-efficient sweeping-based interval joins for extended Allen relation predicates
Authors: Piatov Danila , Helmer Sven , Dignös Anton , Persia Fabio 
Published: February 2021

AbstractWe develop a family of efficient plane-sweeping interval join algorithms for evaluating a wide range of interval predicates such as Allen’s relationships and parameterized relationships. Our technique is based on a framework, components of which can be flexibly combined in different manners to support the required interval relation. In temporal databases, our algorithms can exploit a well-known and flexible access method, the Timeline Index, thus expanding the set of operations it supports even further. Additionally, employing a compact data structure, the gapless hash map, we utilize the CPU cache efficiently. In an experimental evaluation, we show that our approach is several times faster and scales better than state-of-the-art techniques, while being much better suited for real-time event processing.
Distribution of non-spherical nanoparticles in turbulent flow of ventilation chamber considering fluctuating particle number density
Authors: Shi Ruifang , Lin Jianzhong , Yang Hailin , Yu Mingzhou 
Published: February 2021

AbstractThe Reynolds-averaged general dynamic equation (RAGDE) for the nanoparticle size distribution function is derived, including the contribution to particle coagulation resulting from the fluctuating concentration. The equation together with that of a turbulent gas flow is solved numerically in the turbulent flow of a ventilation chamber with a jet on the wall based on the proposed model relating the fluctuating coagulation to the gradient of mean concentration. Some results are compared with the experimental data. The results show that the proposed model relating the fluctuating coagulation to the gradient of mean concentration is reasonable, and it is necessary to consider the contribution to coagulation resulting from the fluctuating concentration in such a flow. The changes of the particle number concentration M0 and the geometric mean diameter dg are more obvious in the core area of the jet, but less obvious in other areas. With the increase in the initial particle number concentration m00, the values of M0 and the standard deviation of the particle size σ decrease, but the value of dg increases. The decrease in the initial particle diameter leads to the reduction of M0 and σ, and the increase in dg. With the increase in the Reynolds number, particles have few chances of collision, and hence the coagulation rate is reduced, leading to the increase in M0 and σ, and the decrease in dg.
A Taxonomy of Noncanonical Uses of Interrogatives
Authors: Puczyłowski Tomasz 
Published: February 2021

AbstractThe aims of this paper are (i) to provide a detailed taxonomy of noncanonical uses of interrogative sentences, i.e. when they are used not to ask a question but to convey some information, or to ask a question albeit not that expressed by the interrogative sentence exploited in the act, (ii) to identify properties of circumstances where an interrogative sentence is being used in this way, and (iii) to propose some maxims that govern the rational use of questions. Four main categories of such cases are presented, and a few further subclasses are differentiated. I show how these types are interrelated, and what logical features differentiate them. I also propose a hypothesis for when an interrogative sentence is not being used in its primary mode. Studies on circumstances in which questions are used in other ways can shed light on maxims that govern asking and questioning in a rational conversation; therefore, some possible maxims of this kind are proposed.
Genetic Influences on the Covariance and Genetic Correlations in a Bivariate Twin Model: An Application to Well-Being
Authors: de Vries Lianne P. , van Beijsterveldt Toos C. E. M. , Maes Hermine , Colodro-Conde Lucía , Bartels Meike 
Published: February 2021

AbstractThe distinction between genetic influences on the covariance (or bivariate heritability) and genetic correlations in bivariate twin models is often not well-understood or only one is reported while the results show distinctive information about the relation between traits. We applied bivariate twin models in a large sample of adolescent twins, to disentangle the association between well-being (WB) and four complex traits (optimism, anxious-depressed symptoms (AD), aggressive behaviour (AGG), and educational achievement (EA)). Optimism and AD showed respectively a strong positive and negative phenotypic correlation with WB, the negative correlation of WB and AGG is lower and the correlation with EA is nearly zero. All four traits showed a large genetic contribution to the covariance with well-being. The genetic correlations of well-being with optimism and AD are strong and smaller for AGG and EA. We used the results of the models to explain what information is retrieved based on the bivariate heritability versus the genetic correlations and the (clinical) implications.
Using indicator species to detect high quality habitats in an East African forest biodiversity hotspot
Authors: Habel Jan Christian , Zamora Camilo , Rödder Dennis , Teucher Mike , Cuadros-Casanova Ivon , Fischer Christina 
Published: February 2021

AbstractSpecies demanding specific habitat requirements suffer, particularly under environmental changes. The smallest owl of Africa, the Sokoke Scops Owl (Otus ireneae), occurs exclusively in East African coastal forests. To understand the movement behaviour and habitat demands of O. ireneae, we combined data from radio-tracking and remote sensing to calculate Species Distribution Models across the Arabuko Sokoke forest in southern Kenya. Based on these data, we estimated the local population size and projected the distribution of current suitable habitats. We found that the species occurs only in Cynometra woodland with large old trees and dense vegetation. Based on home range sizes and the distribution of suitable forest habitats, the local population size was estimated at < 400 pairs. Ongoing selective logging of hard-wood trees and the production of charcoal are reducing habitat quality of which will reduce the low numbers of O. ireneae, and of other specialist forest species, even further. Due to their close connection with intact Cynometra forest, O. ireneae is an excellent indicator of intact forest remnants. In addition, this species is a suitable flagship for the promotion and conservation of the last remaining coastal forests of East Africa.
The Natura 2000 network and the ranges of threatened species in Greece
Authors: Spiliopoulou Konstantina , Dimitrakopoulos Panayiotis G. , Brooks Thomas M. , Kelaidi Gabriela , Paragamian Kaloust , Kati Vassiliki , Oikonomou Anthi , Vavylis Dimitris , Trigas Panayiotis , Lymberakis Petros , Darwall William , Stoumboudi Maria Th. , Triantis Kostas A. 
Published: February 2021

AbstractGlobal environmental goals mandate the expansion of the protected area network to halt biodiversity loss. The European Union’s Natura 2000 network covers 27.3% of the terrestrial area of Greece, one of the highest percentages in Europe. However, the extent to which this network protects Europe’s biodiversity, especially in a biodiverse country like Greece, is unknown. Here, we overlap the country’s Natura 2000 network with the ranges of the 424 species assessed as threatened on the IUCN Red List and present in Greece. Natura 2000 overlaps on average 47.6% of the mapped range of threatened species; this overlap far exceeds that expected by random networks (21.4%). Special Protection Areas and Special Areas of Conservation (non-exclusive subsets of Natura 2000 sites) overlap 33.4% and 38.1% respectively. Crete and Peloponnese are the two regions with the highest percentage of threatened species, with Natura 2000 sites overlapping on average 62.3% with the threatened species’ ranges for the former, but only 30.6% for the latter. The Greek ranges of all 62 threatened species listed in Annexes 1 and II to the Birds and Habitats Directives are at least partially overlapped by the network (52.0%), and 18.0% of these are fully overlapped. However, the ranges of 27 threatened species, all of which are endemic to Greece, are not overlapped at all. These results can inform national policies for the protection of biodiversity beyond current Natura 2000 sites.
Dissolved organic nutrients at the interface of fresh and marine waters: flow regime changes, biogeochemical cascades and picocyanobacterial blooms—the example of Florida Bay, USA
Authors: Glibert Patricia M. , Heil Cynthia A. , Madden Christopher J. , Kelly Stephen P. 
Published: February 2021

AbstractThe availability of dissolved inorganic and organic nutrients and their transformations along the fresh to marine continuum are being modified by various natural and anthropogenic activities and climate-related changes. Subtropical central and eastern Florida Bay, located at the southern end of the Florida peninsula, is classically considered to have inorganic nutrient conditions that are in higher-than-Redfield ratio proportions, and high levels of organic and chemically-reduced forms of nitrogen. However, salinity, pH and nutrients, both organic and inorganic, change with changes in freshwater flows to the bay. Here, using a time series of water quality and physico-chemical conditions from 2009 to 2019, the impacts of distinct changes in managed flow, drought, El Niño-related increases in precipitation, and intensive storms and hurricanes are explored with respect to changes in water quality and resulting ecosystem effects, with a focus on understanding why picocyanobacterial blooms formed when they did. Drought produced hyper-salinity conditions that were associated with a seagrass die-off. Years later, increases in precipitation resulting from intensive storms and a hurricane were associated with high loads of organic nutrients, and declines in pH, likely due to high organic acid input and decaying organic matter, collectively leading to physiologically favorable conditions for growth of the picocyanobacterium,Synechococcusspp. These conditions, including very high concentrations of NH4+, were likely inhibiting for seagrass recovery and for growth of competing phytoplankton or their grazers. Given projected future climate conditions, and anticipated cycles of drought and intensive storms, the likelihood of future seagrass die-offs and picocyanobacterial blooms is high.
Differences and similarities between kraft and oxygen delignification of softwood fibers: effects on chemical and physical properties
Authors: Esteves Cláudia V. , Sevastyanova Olena , Östlund Sören , Brännvall Elisabet 
Published: February 2021

AbstractThe fiber properties after oxygen delignification and kraft pulping were studied by looking into the chemical characteristics and morphology. The effect of the two processes on the fibers was evaluated and compared over a wider kappa number range (from 62 down to15). Wide-angle X-ray scattering, nuclear magnetic resonance and fiber saturation point were used to characterize the fiber network structure. Fiber morphology and fiber dislocations were evaluated by an optical image analysis. The total and surface fiber charges were studied by conductometric and polyelectrolyte titrations. The fiber wall supramolecular structure, such as crystallinity, size of fibril aggregates, pore size and pore volume, were similar for the two processes. The selectivity, in terms of carbohydrate yield, was equal for kraft cooking and oxygen delignification, but the selectivity in terms of viscosity loss per amount of delignification is poorer for oxygen delignification. Clearly more fiber deformations (2–6% units in curl index) in the fibers after oxygen delignification were seen. Introduction of curl depended on the physical state of the fibers, i.e. liberated or in wood matrix. In the pulping stage, the fiber continue to be supported by neighboring fibers, as the delignified chips maintain their form. However, in the subsequent oxygen stage the fibers enter in the form of pulp (liberated fibers), which makes them more susceptible to changes in fiber form.Graphic abstract
The extent of livelihood diversification on the determinants of livelihood diversification in Assosa Wereda, Western Ethiopia
Authors: Ayana Geleta Fekadu , Megento Tebarek Lika , Kussa Fekadu Gurmessa 
Published: February 2021

AbstractThis study was conducted to examine the determinants of diversification of livelihoods to investigate the degree of diversification of households’ livelihoods in Assosa wereda, Benshangul Gumuz Regional State, in western Ethiopia. A total of 320 sample rural households were selected by using systematic sampling technique from four kebeles. Both qualitative and quantitative data collected through a structured questionnaire, key informant interview, focus group discussions and observation. The data were analyzed using descriptive statistical tools, the multinomial logit regression model, and Simpson Diversification Index. The result of the study show, of the 14 determinants of diversification of livelihoods identified: level of education, dependency ratio, access to irrigation, and household urban linkage were significant predictors of diversification of livelihoods. Whereas household age and sex, road distance, credit access, and household media access were insignificant predictors of diversification of livelihoods. Meanwhile, land hold size, livestock holding size in Tropical Livestock Unit, extension contact, cooperative member and total household income couldn’t have any association with household diversification of livelihoods in real conditions on the ground. Ultimately, the Simpson Diversity Index result showed that there was no diversification rather than "specialization" in livelihood. The study therefore urges more diversification opportunities in poverty alleviation and development.
Effect of chemical modification on electronic transport properties of carbyne
Authors: Berdiyorov G. R. , Khalilov U. , Hamoudi H. , Neyts Erik C. 
Published: February 2021

AbstractUsing density functional theory in combination with the Green’s functional formalism, we study the effect of surface functionalization on the electronic transport properties of 1D carbon allotrope—carbyne. We found that both hydrogenation and fluorination result in structural changes and semiconducting to metallic transition. Consequently, the current in the functionalization systems increases significantly due to strong delocalization of electronic states along the carbon chain. We also study the electronic transport in partially hydrogenated carbyne and interface structures consisting of pristine and functionalized carbyne. In the latter case, current rectification is obtained in the system with rectification ratio up to 50%. These findings can be useful for developing carbyne-based structures with tunable electronic transport properties.