bluuebunny/crossref_metadata_2025_split huggingface dataset:
Post-combustion slipstream CO2-capture test facility at Jiangyou Power Plant, Sichuan, China: performance of a membrane separation module under dynamic power-plant operations
Authors: Cui Qian , Wang Baodeng , Zhao Xinglei , Zhang Guoping , He Zhendong , Long Yinhua , Sun Yongwei , Ku Anthony Y 
Published: November 2021

Abstract
Membrane-based separation technologies have the potential to lower the cost of post-combustion CO2 capture from power-plant flue gases through reduced energy and capital costs relative to conventional solvent approaches. Studies have shown promise under controlled conditions, but there is a need for data on performance and reliability under field conditions. Coal-fired power plants in China operate in a dynamic manner, with increases and decreases in output causing changes in flue-gas composition. In this paper, we describe the first field test of a membrane-based post-combustion CO2-capture system connected to a dynamically operating power plant in China. We report the performance of a Membrane Technology Research, Inc. (MTR) PolarisTM membrane-based capture system over a range of plant operating loads ranging from 54% to 84% and conducted an operational stability test over a 168-h period during which the power plant was operating at an average load of 55%, but ramped as high as 79% and as low as 55%. Our results confirm the ability of a membrane capture system to operate effectively over a wide range of host-plant operating conditions, but also identity several issues related to plant integration, system control and resilience in the face of host-plant upsets that require attention as membrane separation systems move towards commercial use.
Prediction model for cost data of a power transmission and transformation project based on Pearson correlation coefficient–IPSO–ELM
Authors: Xin Ju , ShangKe Liu , YanLi Xiao , Ye Wan 
Published: November 2021

Abstract
In view of the difficulty in predicting the cost data of power transmission and transformation projects at present, a method based on Pearson correlation coefficient–improved particle swarm optimization (IPSO)–extreme learning machine (ELM) is proposed. In this paper, the Pearson correlation coefficient is used to screen out the main influencing factors as the input-independent variables of the ELM algorithm and IPSO based on a ladder-structure coding method is used to optimize the number of hidden-layer nodes, input weights and bias values of the ELM. Therefore, the prediction model for the cost data of power transmission and transformation projects based on the Pearson correlation coefficient–IPSO–ELM algorithm is constructed. Through the analysis of calculation examples, it is proved that the prediction accuracy of the proposed method is higher than that of other algorithms, which verifies the effectiveness of the model.
Translanguaging as a political stance: implications for English language education
Authors: Wei Li 
Published: November 2021

Abstract
Following the multilingual trend in language education, translanguaging advocates active use of multiple languages and other meaning-making resources in a dynamic and integrated way in teaching and learning. When it comes to foreign language education, translanguaging advocates a view that the languages the learners already have should and can play a very positive role in learning additional languages. Moreover, the knowledge already acquired through the learners’ first and/or prior learned languages also plays an important role in foreign-language-medium education. This view is more than a pedagogic or theoretical perspective; it is a political stance, a decolonizing stance, that this article explores. It discusses the implications of the political naming of languages and critiques notions such as academic English.
Bipolar ablation of therapy-refractory ventricular arrhythmias: application of a dedicated approach
Authors: Kany Shinwan , Alken Fares Alexander , Schleberger Ruben , Baran Jakub , Luik Armin , Haas Annika , Ene Elena , Deneke Thomas , Dinshaw L , Rillig Andreas , Metzner Andreas , Reissmann Bruno , Makimoto Hisaki , Reents Tilko , Popa Miruna Andrea , Deisenhofer Isabel , Piotrowski Roman , Kulakowski Piotr , Kirchhof Paulus , Scherschel Katharina , Meyer Christian 
Published: November 2021

Abstract

Aims
Bipolar radiofrequency ablation (B-RFA) has been reported as a bail-out strategy for the treatment of therapy refractory ventricular arrhythmias (VA). Currently, existing setups have not been standardized for B-RFA, while the impact of conventional B-RFA approaches on lesion formation remains unclear.

Methods and results
(i) In a multicentre observational study, patients undergoing B-RFA for previously therapy-refractory VA using a dedicated B-RFA setup were retrospectively analysed. (ii) Additionally, in an ex vivo model lesion formation during B-RFA was evaluated using porcine hearts. In a total of 26 procedures (24 patients), acute success was achieved in all 14 ventricular tachycardia (VT) procedures and 7/12 procedures with premature ventricular contractions (PVC), with major complications occurring in 1 procedure (atrioventricular block). During a median follow-up of 211 days in 21 patients, 6/11 patients (VT) and 5/10 patients (PVC) remained arrhythmia-free. Lesion formation in the ex vivo model during energy titration from 30 to 50 W led to similar lesion volumes compared with initial high-power 50 W B-RFA. Lesion size significantly increased when combining sequential unipolar and B-RFA (1429 mm3 vs. titration 501 mm3 vs. B-RFA 50 W 423 mm3, P &lt; 0.001), an approach used in overall 58% of procedures and more frequently applied in procedures without VA recurrence (92% vs. 36%, P = 0.009). Adipose tissue severely limited lesion formation during B-RFA.

Conclusion
Using a dedicated device for B-RFA for therapy-refractory VA appears feasible and safe. While some patients need repeat ablation, success rates were encouraging. Sequential unipolar and B-RFA may be favourable for lesion formation.
Collection Age and Seed Mass Influence Germination and Seedling Growth in Midwestern White Spruce Accessions
Authors: Connolly Brian M 
Published: November 2021

Abstract
Stored tree seed collections are essential resources for seedling production and conserving unique germplasm. As stored seeds age, however, seed viability and seedling vigor can decline. This study tests how age and seed mass correspond to germination dynamics and seedling vigor in four white spruce collections from the upper midwestern United States. Using two seedling growth experiments, this study demonstrates that white spruce seeds stored for &gt;30 years have low seed viability and slower seedling growth rates compared with seeds from more recent (≤10 years) white spruce collections. Seed mass also predicted seedling growth rate regardless of collection age, suggesting larger seeds from older collections generate faster growing seedlings.
Filling the gaps in Leishmania naiffi and Leishmania guyanensis genome plasticity
Authors: Patiño Luz H , Muñoz Marina , Pavia Paula , Muskus Carlos , Shaban Maryia , Paniz-Mondolfi Alberto , Ramírez Juan David 
Published: November 2021

Abstract
Insufficient and irregular data reports on Leishmaniasis, issuing from the developing world, have left much to be desired in terms of understanding the molecular signatures producing distinct infectious phenotypes of the disease. Herein, we report on the complete genome sequencing of Leishmania naiffi and Leishmania guyanensis, sampled from patients in regions of Colombia and Venezuela. In this study, the isolates of cutaneous lesions from both species presented limited structural variation at the chromosomal level, low gene copy number variation, and high genetic heterogeneity. We compared these sequences to the reference genomes hitherto related from Brazil and French Guyana. Although of the same species, we note a consequential genomic disparity between the Venezuelan and French Guyanese isolates of L. guyanensis. Although less significant on the global schema of cutaneous and mucosal disease, such genomic studies of L. naiffi and L. guyanensis substantiate the gaps in understanding of the molecular architecture and multivariate clinical pictures of Leishmaniasis, on an international scale.
Genomic prediction of strawberry resistance to postharvest fruit decay caused by the fungal pathogenBotrytis cinerea
Authors: Petrasch Stefan , Mesquida-Pesci Saskia D , Pincot Dominique D A , Feldmann Mitchell J , López Cindy M , Famula Randi , Hardigan Michael A , Cole Glenn S , Knapp Steven J , Blanco-Ulate Barbara 
Published: November 2021

AbstractGray mold, a disease of strawberry (Fragaria × ananassa) caused by the ubiquitous necrotroph Botrytis cinerea, renders fruit unmarketable and causes economic losses in the postharvest supply chain. To explore the feasibility of selecting for increased resistance to gray mold, we undertook genetic and genomic prediction studies in strawberry populations segregating for fruit quality and shelf life traits hypothesized to pleiotropically affect susceptibility. As predicted, resistance to gray mold was heritable but quantitative and genetically complex. While every individual was susceptible, the speed of symptom progression and severity differed. Narrow-sense heritability ranged from 0.38 to 0.71 for lesion diameter (LD) and 0.39 to 0.44 for speed of emergence of external mycelium (EM). Even though significant additive genetic variation was observed for LD and EM, the phenotypic ranges were comparatively narrow and genome-wide analyses did not identify any large-effect loci. Genomic selection (GS) accuracy ranged from 0.28 to 0.59 for LD and 0.37 to 0.47 for EM. Additive genetic correlations between fruit quality and gray mold resistance traits were consistent with prevailing hypotheses: LD decreased as titratable acidity increased, whereas EM increased as soluble solid content decreased and firmness increased. We concluded that phenotypic and GS could be effective for reducing LD and increasing EM, especially in long shelf life populations, but that a significant fraction of the genetic variation for resistance to gray mold was caused by the pleiotropic effects of fruit quality traits that differ among market and shelf life classes.
Evolutionary dynamics of DIRS-like and Ngaro-like retrotransposons in Xenopus laevis and Xenopus tropicalis genomes
Authors: Gazolla Camilla Borges , Ludwig Adriana , de Moura Gama Joana , Bruschi Daniel Pacheco 
Published: November 2021

Abstract
Anuran genomes have a large number and diversity of transposable elements, but are little explored, mainly in relation to their molecular structure and evolutionary dynamics. Here, we investigated the retrotransposons containing tyrosine recombinase (YR) (order DIRS) in the genome of Xenopus tropicalis and Xenopus laevis. These anurans show 2n = 20 and the 2n = 36 karyotypes, respectively. They diverged about 48 million years ago (mya) and X. laevis had an allotetraploid origin (around 17–18 mya). Our investigation is based on the analysis of the molecular structure and the phylogenetic relationships of 95 DIRS families of Xenopus belonging to DIRS-like and Ngaro-like superfamilies. We were able to identify molecular signatures in the 5' and 3' noncoding terminal regions, preserved open reading frames, and conserved domains that are specific to distinguish each superfamily. We recognize two ancient amplification waves of DIRS-like elements that occurred in the ancestor of both species and a higher density of the old/degenerate copies detected in both subgenomes of X. laevis. More recent amplification waves are seen in X. tropicalis (less than 3.2 mya) and X. laevis (around 10 mya) corroborating with transcriptional activity evidence. All DIRS-like families were found in both X. laevis subgenomes, while a few were most represented in the L subgenome. Ngaro-like elements presented less diversity and quantity in X. tropicalis and X. laevis genomes, although potentially active copies were found in both species and this is consistent with a recent amplification wave seen in the evolutionary landscape. Our findings highlight a differential diversity-level and evolutionary dynamics of the YR retrotransposons in X. tropicalis and X. laevis species expanding our comprehension of the behavior of these elements in both genomes during the diversification process.
Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility
Authors: Zou Jennifer , Gopalakrishnan Shyam , Parker Clarissa C , Nicod Jerome , Mott Richard , Cai Na , Lionikas Arimantas , Davies Robert W , Palmer Abraham A , Flint Jonathan 
Published: November 2021

Abstract
Combining samples for genetic association is standard practice in human genetic analysis of complex traits, but is rarely undertaken in rodent genetics. Here, using 23 phenotypes and genotypes from two independent laboratories, we obtained a sample size of 3076 commercially available outbred mice and identified 70 loci, more than double the number of loci identified in the component studies. Fine-mapping in the combined sample reduced the number of likely causal variants, with a median reduction in set size of 51%, and indicated novel gene associations, including Pnpo, Ttll6, and GM11545 with bone mineral density, and Psmb9 with weight. However, replication at a nominal threshold of 0.05 between the two component studies was low, with less than one-third of loci identified in one study replicated in the second. In addition to overestimates in the effect size in the discovery sample (Winner’s Curse), we also found that heterogeneity between studies explained the poor replication, but the contribution of these two factors varied among traits. Leveraging these observations, we integrated information about replication rates, study-specific heterogeneity, and Winner’s Curse corrected estimates of power to assign variants to one of four confidence levels. Our approach addresses concerns about reproducibility and demonstrates how to obtain robust results from mapping complex traits in any genome-wide association study.
A generic hidden Markov model for multiparent populations
Authors: Broman Karl W 
Published: November 2021

Abstract
A common step in the analysis of multiparent populations (MPPs) is genotype reconstruction: identifying the founder origin of haplotypes from dense marker data. This process often makes use of a probability model for the pattern of founder alleles along chromosomes, including the relative frequency of founder alleles and the probability of exchanges among them, which depend on a model for meiotic recombination and on the mating design for the population. While the precise experimental design used to generate the population may be used to derive a precise characterization of the model for exchanges among founder alleles, this can be tedious, particularly given the great variety of experimental designs that have been proposed. We describe an approximate model that can be applied for a variety of MPPs. We have implemented the approach in the R/qtl2 software, and we illustrate its use in applications to publicly available data on Diversity Outbred and Collaborative Cross mice.
Conservation of griseofulvin genes in the gsf gene cluster among fungal genomes
Authors: Aris Parisa , Yan Lihong , Wei Yulong , Chang Ying , Shi Bihong , Xia Xuhua 
Published: November 2021

Abstract
The polyketide griseofulvin is a natural antifungal compound and research in griseofulvin has been key in establishing our current understanding of polyketide biosynthesis. Nevertheless, the griseofulvin gsf biosynthetic gene cluster (BGC) remains poorly understood in most fungal species, including Penicillium griseofulvum where griseofulvin was first isolated. To elucidate essential genes involved in griseofulvin biosynthesis, we performed third-generation sequencing to obtain the genome of P. griseofulvum strain D-756. Furthermore, we gathered publicly available genome of 11 other fungal species in which gsf gene cluster was identified. In a comparative genome analysis, we annotated and compared the gsf BGC of all 12 fungal genomes. Our findings show no gene rearrangements at the gsf BGC. Furthermore, seven gsf genes are conserved by most genomes surveyed whereas the remaining six were poorly conserved. This study provides new insights into differences between gsf BGC and suggests that seven gsf genes are essential in griseofulvin production.
The disease-associated proteins Drosophila Nab2 and Ataxin-2 interact with shared RNAs and coregulate neuronal morphology
Authors: Rounds J Christopher , Corgiat Edwin B , Ye Changtian , Behnke Joseph A , Kelly Seth M , Corbett Anita H , Moberg Kenneth H 
Published: November 2021

Abstract
Nab2 encodes the Drosophila melanogaster member of a conserved family of zinc finger polyadenosine RNA-binding proteins (RBPs) linked to multiple steps in post-transcriptional regulation. Mutation of the Nab2 human ortholog ZC3H14 gives rise to an autosomal recessive intellectual disability but understanding of Nab2/ZC3H14 function in metazoan nervous systems is limited, in part because no comprehensive identification of metazoan Nab2/ZC3H14-associated RNA transcripts has yet been conducted. Moreover, many Nab2/ZC3H14 functional protein partnerships remain unidentified. Here, we present evidence that Nab2 genetically interacts with Ataxin-2 (Atx2), which encodes a neuronal translational regulator, and that these factors coordinately regulate neuronal morphology, circadian behavior, and adult viability. We then present the first high-throughput identifications of Nab2- and Atx2-associated RNAs in Drosophila brain neurons using RNA immunoprecipitation-sequencing (RIP-Seq). Critically, the RNA interactomes of each RBP overlap, and Nab2 exhibits high specificity in its RNA associations in neurons in vivo, associating with a small fraction of all polyadenylated RNAs. The identities of shared associated transcripts (e.g., drk, me31B, stai) and of transcripts specific to Nab2 or Atx2 (e.g., Arpc2 and tea) promise insight into neuronal functions of, and genetic interactions between, each RBP. Consistent with prior biochemical studies, Nab2-associated neuronal RNAs are overrepresented for internal A-rich motifs, suggesting these sequences may partially mediate Nab2 target selection. These data support a model where Nab2 functionally opposes Atx2 in neurons, demonstrate Nab2 shares associated neuronal RNAs with Atx2, and reveal Drosophila Nab2 associates with a more specific subset of polyadenylated mRNAs than its polyadenosine affinity alone may suggest.
Transmission distortion and genetic incompatibilities between alleles in a multigenerational mouse advanced intercross line
Authors: Arends Danny , Kärst Stefan , Heise Sebastian , Korkuc Paula , Hesse Deike , Brockmann Gudrun A 
Published: November 2021

Abstract
While direct additive and dominance effects on complex traits have been mapped repeatedly, additional genetic factors contributing to the heterogeneity of complex traits have been scarcely investigated. To assess genetic background effects, we investigated transmission ratio distortions (TRDs) of alleles from parent to offspring using an advanced intercross line (AIL) of an initial cross between the mouse inbred strains C57BL/6NCrl (B6N) and BFMI860-12 [Berlin Fat Mouse Inbred (BFMI)]. A total of 341 males of generation 28 and their respective 61 parents and 66 grandparents were genotyped using Mega Mouse Universal Genotyping Arrays. TRDs were investigated using allele transmission asymmetry tests, and pathway overrepresentation analysis was performed. Sequencing data were used to test for overrepresentation of nonsynonymous SNPs (nsSNPs) in TRD regions. Genetic incompatibilities were tested using the Bateson–Dobzhansky–Muller two-locus model. A total of 62 TRD regions were detected, many in close proximity to the telocentric centromere. TRD regions contained 44.5% more nsSNPs than randomly selected regions (182 vs 125.9 ± 17.0, P &lt; 1 × 10−4). Testing for genetic incompatibilities between TRD regions identified 29 genome-wide significant incompatibilities between TRD regions [P(BF) &lt; 0.05]. Pathway overrepresentation analysis of genes in TRD regions showed that DNA methylation, epigenetic regulation of RNA, and meiotic/meiosis regulation pathways were affected independent of the parental origin of the TRD. Paternal BFMI TRD regions showed overrepresentation in the small interfering RNA biogenesis and in the metabolism of lipids and lipoproteins. Maternal B6N TRD regions harbored genes involved in meiotic recombination, cell death, and apoptosis pathways. The analysis of genes in TRD regions suggests the potential distortion of protein–protein interactions influencing obesity and diabetic retinopathy as a result of disadvantageous combinations of allelic variants in Aass, Pgx6, and Nme8. Using an AIL significantly improves the resolution at which we can investigate TRD. Our analysis implicates distortion of protein–protein interactions as well as meiotic drive as the underlying mechanisms leading to the observed TRD in our AIL. Furthermore, genes with large amounts of nsSNPs located in TRD regions are more likely to be involved in pathways that are related to the phenotypic differences between the parental strains. Genes in these TRD regions provide new targets for investigating genetic adaptation, protein–protein interactions, and determinants of complex traits such as obesity.
The Genealogical Divergence Index Across a Speciation Continuum in Hercules Beetles
Authors: Huang Jen-Pan 
Published: November 2021

Abstract
The genealogical divergence index (gdi) was developed to aid in molecular species delimitation under the multispecies coalescent model, which has been shown to delimit genetic structures but not necessarily species. Although previous studies have used meta-analyses to show that gdi could be informative for distinguishing taxonomically good species, the biological and evolutionary implications of divergences showing different gdi values have yet to be studied. I showed that an increase in gdi value was correlated with later stages of divergence further along a speciation continuum in an Amazonian Hercules beetle system. Specifically, a gdi value of 0.7 or higher was associated with diverge between biological species that can coexist in geographic proximity while maintaining their evolutionary independence. Divergences between allopatric species that were conventionally given subspecific status, such as geographic taxa that may or may not be morphologically divergent, had gdi values that fell within the species delimitation ambiguous zone (0.2 &lt; gdi &lt; 0.7). However, the results could be drastically affected by the sampling design, i.e., the choice of different geographic populations and the lumping of distinct genetic groups when running the analyses. Different gdi values may prove to be biologically and evolutionarily informative should additional speciation continua from different empirical systems be investigated, and the results obtained may help with objectively delimiting species in the era of integrative taxonomy.