bluuebunny/crossref_metadata_2025_split huggingface dataset:
HIV envelope antigen valency on peptide nanofibers modulates antibody magnitude and binding breadth
Authors: Fries Chelsea N. , Chen Jui-Lin , Dennis Maria L. , Votaw Nicole L. , Eudailey Joshua , Watts Brian E. , Hainline Kelly M. , Cain Derek W. , Barfield Richard , Chan Cliburn , Moody M. Anthony , Haynes Barton F. , Saunders Kevin O. , Permar Sallie R. , Fouda Genevieve G. , Collier Joel H. 
Published: July 2021

AbstractA major challenge in developing an effective vaccine against HIV-1 is the genetic diversity of its viral envelope. Because of the broad range of sequences exhibited by HIV-1 strains, protective antibodies must be able to bind and neutralize a widely mutated viral envelope protein. No vaccine has yet been designed which induces broadly neutralizing or protective immune responses against HIV in humans. Nanomaterial-based vaccines have shown the ability to generate antibody and cellular immune responses of increased breadth and neutralization potency. Thus, we have developed supramolecular nanofiber-based immunogens bearing the HIV gp120 envelope glycoprotein. These immunogens generated antibody responses that had increased magnitude and binding breadth compared to soluble gp120. By varying gp120 density on nanofibers, we determined that increased antigen valency was associated with increased antibody magnitude and germinal center responses. This study presents a proof-of-concept for a nanofiber vaccine platform generating broad, high binding antibody responses against the HIV-1 envelope glycoprotein.
Social cognition in individuals born preterm
Authors: Pavlova Marina A. , Galli Jessica , Zanetti Federica , Pagani Federica , Micheletti Serena , Rossi Andrea , Sokolov Alexander N. , Fallgatter Andreas J. , Fazzi Elisa M. 
Published: July 2021

AbstractFaces hold a substantial value for effective social interactions and sharing. Covering faces with masks, due to COVID-19 regulations, may lead to difficulties in using social signals, in particular, in individuals with neurodevelopmental conditions. Daily-life social participation of individuals who were born preterm is of immense importance for their quality of life. Here we examined face tuning in individuals (aged 12.79 ± 1.89 years) who were born preterm and exhibited signs of periventricular leukomalacia (PVL), a dominant form of brain injury in preterm birth survivors. For assessing the face sensitivity in this population, we implemented a recently developed experimental tool, a set of Face-n-Food images bordering on the style of Giuseppe Arcimboldo. The key benefit of these images is that single components do not trigger face processing. Although a coarse face schema is thought to be hardwired in the brain, former preterms exhibit substantial shortages in the face tuning not only compared with typically developing controls but also with individuals with autistic spectrum disorders. The lack of correlations between the face sensitivity and other cognitive abilities indicates that these deficits are domain-specific. This underscores impact of preterm birth sequelae for social functioning at large. Comparison of the findings with data in individuals with other neurodevelopmental and neuropsychiatric conditions provides novel insights into the origins of deficient face processing.
Exercise intolerance in volume overload heart failure is associated with low carotid body mediated chemoreflex drive
Authors: Andrade David C. , Díaz-Jara Esteban , Toledo Camilo , Schwarz Karla G. , Pereyra Katherin V. , Díaz Hugo S. , Marcus Noah J. , Ortiz Fernando C. , Ríos-Gallardo Angélica P. , Ortolani Domiziana , Del Rio Rodrigo 
Published: July 2021

AbstractMounting an appropriate ventilatory response to exercise is crucial to meeting metabolic demands, and abnormal ventilatory responses may contribute to exercise-intolerance (EX-inT) in heart failure (HF) patients. We sought to determine if abnormal ventilatory chemoreflex control contributes to EX-inT in volume-overload HF rats. Cardiac function, hypercapnic (HCVR) and hypoxic (HVR) ventilatory responses, and exercise tolerance were assessed at the end of a 6 week exercise training program. At the conclusion of the training program, exercise tolerant HF rats (HF + EX-T) exhibited improvements in cardiac systolic function and reductions in HCVR, sympathetic tone, and arrhythmias. In contrast, HF rats that were exercise intolerant (HF + EX-inT) exhibited worse diastolic dysfunction, and showed no improvements in cardiac systolic function, HCVR, sympathetic tone, or arrhythmias at the conclusion of the training program. In addition, HF + EX-inT rats had impaired HVR which was associated with increased arrhythmia susceptibility and mortality during hypoxic challenges (~ 60% survival). Finally, we observed that exercise tolerance in HF rats was related to carotid body (CB) function as CB ablation resulted in impaired exercise capacity in HF + EX-T rats. Our results indicate that: (i) exercise may have detrimental effects on cardiac function in HF-EX-inT, and (ii) loss of CB chemoreflex sensitivity contributes to EX-inT in HF.
Impact of modified albumin–bilirubin grade on survival in patients with HCC who received lenvatinib
Authors: Tada Toshifumi , Kumada Takashi , Hiraoka Atsushi , Atsukawa Masanori , Hirooka Masashi , Tsuji Kunihiko , Ishikawa Toru , Takaguchi Koichi , Kariyama Kazuya , Itobayashi Ei , Tajiri Kazuto , Shimada Noritomo , Shibata Hiroshi , Ochi Hironori , Yasuda Satoshi , Toyoda Hidenori , Fukunishi Shinya , Ohama Hideko , Kawata Kazuhito , Tani Joji , Nakamura Shinichiro , Nouso Kazuhiro , Tsutsui Akemi , Nagano Takuya , Takaaki Tanaka , Itokawa Norio , Okubo Tomomi , Arai Taeang , Imai Michitaka , Joko Kouji , Koizumi Yohei , Hiasa Yoichi ,   Real-life Practice Experts for HCC (RELPEC) Study Group and the HCC 48 Group (hepatocellular carcinoma experts from 48 clinics in Japan)
Published: July 2021

AbstractWe investigated the impact on survival of modified albumin–bilirubin (mALBI) grade versus Child–Pugh classification in patients with hepatocellular carcinoma (HCC) who received lenvatinib. A total of 524 patients with HCC who received lenvatinib were included. Univariate analysis showed that mALBI grade 2b/3 and Child–Pugh class B/C were significantly associated with survival [hazard ratio (HR), 2.471; 95% confidence interval (CI), 1.944–3.141 and HR, 2.178; 95%CI, 1.591–2.982]. In patients with a Child–Pugh score of 5, multivariate analysis showed that mALBI grade 2b/3 was independently associated with survival (HR, 1.814; 95%CI, 1.083–3.037). Conversely, among patients with mALBI grade 1/2a, there was no difference in survival between those with a Child–Pugh class of 5 or 6 (p = 0.735). Time-dependent receiver operating characteristic analysis showed that the ALBI score predicted survival better than the Child–Pugh score. The optimal cut-off value of the ALBI score for predicting survival was nearly the same as the value separating mALBI grades 2a and 2b. In conclusion, the mALBI grade was a better predictor of survival than the Child–Pugh classification in patients with unresectable HCC who received lenvatinib therapy.
Strain hardening recovery mediated by coherent precipitates in lightweight steel
Authors: Kim Sung-Dae , Park Seong-Jun , Jang Jae hoon , Moon Joonoh , Ha Heon-Young , Lee Chang-Hoon , Park Hyungkwon , Shin Jong-Ho , Lee Tae-Ho 
Published: July 2021

AbstractWe investigated the effect of κ-carbide precipitates on the strain hardening behavior of aged Fe–Mn-Al-C alloys by microstructure analysis. The κ-carbides-strengthened Fe–Mn-Al-C alloys exhibited a superior strength-ductility balance enabled by the recovery of the strain hardening rate. To understand the relation between the κ-carbides and strain hardening recovery, dislocation gliding in the aged alloys during plastic deformation was analyzed through in situ tensile transmission electron microscopy (TEM). The in﻿ situ TEM results confirmed the particle shearing mechanism leads to planar dislocation gliding. During deformation of the 100 h-aged alloy, some gliding dislocations were strongly pinned by the large κ-carbide blocks and were prone to cross-slip, leading to the activation of multiple slip systems. The abrupt decline in the dislocation mean free path was attributed to the activation of multiple slip systems, resulting in the rapid saturation of the strain hardening recovery. It is concluded that the planar dislocation glide and sequential activation of slip systems are key to induce strain hardening recovery in polycrystalline metals. Thus, if a microstructure is designed such that dislocations glide in a planar manner, the strain hardening recovery could be utilized to obtain enhanced mechanical properties of the material.
Effects of wood ash and N fertilization on soil chemical properties and growth of Zelkova serrata across soil types
Authors: An Ji Young , Park Byung Bae 
Published: July 2021

AbstractWood ash generated as a by-product of biomass combustion can be a sustainable and reasonable approach to counteract acidification and correct nutrient deficiency in forest soils. We investigated the influence of wood ash (WA) and combined WA + N (nitrogen) on soil chemical properties, growth and foliar nutrients of Zelkova serrata and their potential as a soil amender across different soil types. We applied four levels of WA (0, 5, 10, and 20 Mg ha−1) and two levels of N fertilizer (0 and 150 kg ha−1) across three different soil types: landfill saline (LS) soil, forest infertile (FI) soil, and forest acidic (FA) soil. The WA generally improved soil pH, organic matter, available P, exchangeable cations (K+, Na+, Ca2+, and Mg2+), and EC of the three soils, but its ameliorating and neutralizing effects were predominant in FA soil. N fertilizer was more effective in improving plant growth, especially for biomass production in LS and FI soils. WA application significantly increased biomass production when it was applied over 5 Mg ha−1 in FA soil, but higher dose rate of WA (i.e. 20 Mg ha−1) seems to pose negative effects. Foliar P, K, and Ca concentrations also tended to increase with the increasing amount of WA. Therefore, lower dosage of WA without N can be applied as a soil amender to counteract forest soil acidity and improve plant growth and foliar nutrient concentration, whereas N fertilizer without WA can be added to correct nutrient soil deficiencies in landfill and infertile soils. This study should enhance our understanding of WA as a sustainable and reasonable approach to counteract acidification and correct nutrient deficiency in forest soils.
Morphological response accompanying size reduction of belemnites during an Early Jurassic hyperthermal event modulated by life history
Authors: Nätscher Paulina S. , Dera Guillaume , Reddin Carl J. , Rita Patrícia , De Baets Kenneth 
Published: July 2021

AbstractOne of the most common responses of marine ectotherms to rapid warming is a reduction in body size, but the underlying reasons are unclear. Body size reductions have been documented alongside rapid warming events in the fossil record, such as across the Pliensbachian-Toarcian boundary (PToB) event (~ 183 Mya). As individuals grow, parallel changes in morphology can indicate details of their ecological response to environmental crises, such as changes in resource acquisition, which may anticipate future climate impacts. Here we show that the morphological growth of a marine predator belemnite species (extinct coleoid cephalopods) changed significantly over the PToB warming event. Increasing robustness at different ontogenetic stages likely results from indirect consequences of warming, like resource scarcity or hypercalcification, pointing toward varying ecological tolerances among species. The results of this study stress the importance of taking life history into account as well as phylogeny when studying impacts of environmental stressors on marine organisms.
Phase analysis on the error scaling of entangled qubits in a 53-qubit system
Authors: Huang Wei-Jia , Chien Wei-Chen , Cho Chien-Hung , Huang Che-Chun , Huang Tsung-Wei , Tan Seng Ghee , Cao C. , Zeng Bei , Chang Ching-Ray 
Published: July 2021

AbstractWe have studied carefully the behaviors of entangled qubits on the IBM Rochester with various connectivities and under a “noisy” environment. A phase trajectory analysis based on our measurements of the GHZ-like states is performed. Our results point to an important fact that entangled qubits are “protected” against environmental noise by a scaling property that impacts only the weighting of their amplitudes. The reproducibility of most measurements has been confirmed within a reasonably short gate operation time. But there still are a few combinations of qubits that show significant entanglement evolution in the form of transitions between quantum states. The phase trajectory of an entangled evolution, and the impact of the sudden death of GHZ-like states and the revival of newly excited states are analyzed in details. All observed trajectories of entangled qubits arise under the influences of the newly excited states in a “noisy” intermediate-scale quantum (NISQ) computer.
Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities
Authors: Lamy Thomas , Pitz Kathleen J. , Chavez Francisco P. , Yorke Christie E. , Miller Robert J. 
Published: July 2021

AbstractBiodiversity is changing at an accelerating rate at both local and regional scales. Beta diversity, which quantifies species turnover between these two scales, is emerging as a key driver of ecosystem function that can inform spatial conservation. Yet measuring biodiversity remains a major challenge, especially in aquatic ecosystems. Decoding environmental DNA (eDNA) left behind by organisms offers the possibility of detecting species sans direct observation, a Rosetta Stone for biodiversity. While eDNA has proven useful to illuminate diversity in aquatic ecosystems, its utility for measuring beta diversity over spatial scales small enough to be relevant to conservation purposes is poorly known. Here we tested how eDNA performs relative to underwater visual census (UVC) to evaluate beta diversity of marine communities. We paired UVC with 12S eDNA metabarcoding and used a spatially structured hierarchical sampling design to assess key spatial metrics of fish communities on temperate rocky reefs in southern California. eDNA provided a more-detailed picture of the main sources of spatial variation in both taxonomic richness and community turnover, which primarily arose due to strong species filtering within and among rocky reefs. As expected, eDNA detected more taxa at the regional scale (69 vs. 38) which accumulated quickly with space and plateaued at only ~ 11 samples. Conversely, the discovery rate of new taxa was slower with no sign of saturation for UVC. Based on historical records in the region (2000–2018) we found that 6.9 times more UVC samples would be required to detect 50 taxa compared to eDNA. Our results show that eDNA metabarcoding can outperform diver counts to capture the spatial patterns in biodiversity at fine scales with less field effort and more power than traditional methods, supporting the notion that eDNA is a critical scientific tool for detecting biodiversity changes in aquatic ecosystems.
Use of a real-life practical context changes the relationship between implicit body representations and real body measurements
Authors: De Coster Lize , Sánchez-Herrero Pablo , López-Moreno Jorge , Tajadura-Jiménez Ana 
Published: July 2021

AbstractA mismatch exists between people’s mental representations of their own body and their real body measurements, which may impact general well-being and health. We investigated whether this mismatch is reduced when contextualizing body size estimation in a real-life scenario. Using a reverse correlation paradigm, we constructed unbiased, data-driven visual depictions of participants’ implicit body representations. Across three conditions—own abstract, ideal, and own concrete body—participants selected the body that looked most like their own, like the body they would like to have, or like the body they would use for online shopping. In the own concrete condition only, we found a significant correlation between perceived and real hip width, suggesting that the perceived/real body match only exists when body size estimation takes place in a practical context, although the negative correlation indicated inaccurate estimation. Further, participants who underestimated their body size or who had more negative attitudes towards their body weight showed a positive correlation between perceived and real body size in the own abstract condition. Finally, our results indicated that different body areas were implicated in the different conditions. These findings suggest that implicit body representations depend on situational and individual differences, which has clinical and practical implications.
Periodontal inflamed surface area is associated with hs-CRP in septuagenarian Japanese adults in cross-sectional findings from the SONIC study
Authors: Miki Koji , Kitamura Masahiro , Hatta Kodai , Kamide Kei , Gondo Yasuyuki , Yamashita Motozo , Takedachi Masahide , Nozaki Takenori , Fujihara Chiharu , Kashiwagi Yoichiro , Iwayama Tomoaki , Takahashi Toshihito , Sato Hitomi , Murotani Yuki , Kabayama Mai , Takeya Yasushi , Takami Yoichi , Akasaka Hiroshi , Yamamoto Koichi , Sugimoto Ken , Ishizaki Tatsuro , Masui Yukie , Rakugi Hiromi , Ikebe Kazunori , Murakami Shinya 
Published: July 2021

AbstractPeriodontal disease is a chronic inflammatory condition that affects various peripheral organs. The periodontal inflamed surface area (PISA) quantifies periodontitis severity and the spread of inflammatory wounds. This study aimed to investigate the association between PISA and high-sensitivity C-reactive protein (hs-CRP), a systemic inflammation marker. This study included 250 community-dwelling septuagenarians (69–71 years). We collected information on their medical (e.g., diabetes and dyslipidemia) and dental examinations (e.g., measurement of the probing pocket depth). Generalized linear model analysis was used to explore the association between PISA and hs-CRP levels. There was a significant difference in hs-CRP levels between groups with PISA ≥ 500 and < 500 (p = 0.017). Moreover, the generalized linear model analysis revealed a significant association between PISA and hs-CRP levels (risk ratio = 1.77; p = 0.033) even after adjusting other factors. Further, we found a correlation between PISA and hs-CRP (Spearman’s rank correlation coefficient, rs = 0.181; p = 0.023). Our findings suggest that PISA is an effective index for estimating the effect of periodontitis on the whole body, enabling medical-dental cooperation.
Coronary artery segmentation under class imbalance using a U-Net based architecture on computed tomography angiography images
Authors: Pan Li-Syuan , Li Chia-Wei , Su Shun-Feng , Tay Shee-Yen , Tran Quoc-Viet , Chan Wing P. 
Published: July 2021

AbstractCoronary artery disease is caused primarily by vessel narrowing. Extraction of the coronary artery area from images is the preferred procedure for diagnosing coronary diseases. In this study, a U-Net-based network architecture, 3D Dense-U-Net, was adopted to perform fully automatic segmentation of the coronary artery. The network was applied to 474 coronary computed tomography (CT) angiography scans performed at Wanfang Hospital, Taiwan. Of these, 10% were used for testing. The CT scans were divided into patches of 16 original high-resolution slices. The slices were overlapped between patches to take advantage of surrounding imaging information. However, an imbalance between the foreground and background presents a challenge in smaller-object segmentation such as with coronary arteries. The network was optimized and achieved a promising result when the focal loss concept was adopted. To evaluate the accuracy of the automatic segmentation approach, the dice similarity coefficient (DSC) was calculated, and an existing clinical tool was used. The subjective ratings of three experienced radiologists were used to compare the two ratings. The results show that the proposed approach can achieve a DSC of 0.9691, which is significantly higher than other studies using a deep learning approach. In the main trunk, the results of automatic segmentation agree with those of the clinical tool; they were significantly better in some small branches. In our study, automatic segmentation tool shows high-performance detection in coronary lumen vessels, thereby providing potential power in assisting clinical diagnosis.
Distributions of photosynthetic traits, shoot growth, and anti-herbivory defence within a canopy of Quercus serrata in different soil nutrient conditions
Authors: Norisada Masanari , Izuta Takeshi , Watanabe Makoto 
Published: July 2021

AbstractThe hypothesis of the present study is that not only distributions of leaf photosynthetic traits and shoot growth along light gradient within a canopy of forest trees, but also that of leaf anti-herbivory defence capacities are influenced by soil nutrient condition. To test this hypothesis, we investigated the distributions of photosynthetic traits, shoot growth, anti-herbivory defence and leaf herbivory rate throughout the canopy of Quercus serrata grown in two sites with different soil nutrient conditions. In both sites, photosynthetic traits, shoot growth, and anti-herbivory defence were greater in the upper canopy. The overall defence and herbivory rate in the lower nutrient condition were higher and lower than those in the higher nutrient condition, respectively. Although differences in leaf traits between upper and lower canopies in the higher nutrient condition were smaller than those in the lower nutrient condition, no difference was found for anti-herbivory defence. These results suggest that soil nutrient condition does not affect the distributions of leaf anti herbivory defence along light gradient within a canopy of Q. serrata.
Developmental thyroid disruption causes long-term impacts on immune cell function and transcriptional responses to pathogen in a small fish model
Authors: Hampton Leah M. Thornton , Finch Miranda G. , Martyniuk Christopher J. , Venables Barney J. , Jeffries Marlo K. Sellin 
Published: July 2021

AbstractCurrent evidence suggests thyroid hormones (THs) impact development of the immune system, but few studies have explored the connection between the thyroid and immune systems, especially in fish. This is important as some environmental contaminants disrupt TH homeostasis and may thus have negative impacts on the immune system. To determine the long-term consequences of early life stage (ELS) hypothyroidism on immune function, fathead minnows were exposed to the model thyroid hormone suppressant propylthiouracil (PTU) from < 1 to 30 days post hatch. Fish were transferred to clean water and raised to adulthood (5–7 months post hatch) at which time, several aspects of immune function were evaluated. Ex vivo assessment of immune cell function revealed significant decreases (1.2-fold) in the phagocytic cell activity of PTU-treated fish relative to the controls. Fish were also injected with Yersinia ruckeri to evaluate their in vivo immune responses across a suite of endpoints (i.e., transcriptomic analysis, leukocyte counts, spleen index, hematocrit, bacterial load and pathogen resistance). The transcriptomic response to infection was significantly different between control and PTU-treated fish, though no differences in bacterial load or pathogen resistance were noted. Overall, these results suggest that early life stage TH suppression causes long-term impacts on immune function at the molecular and cellular levels suggesting a key role for TH signaling in normal immune system development. This study lays the foundation for further exploration into thyroid-immune crosstalk in fish. This is noteworthy as disruption of the thyroid system during development, which can occur in response to chemicals present in the environment, may have lasting effects on immune function in adulthood.