bluuebunny/crossref_metadata_2025_split huggingface dataset:
Chronic social defeat stress impairs goal-directed behavior through dysregulation of ventral hippocampal activity in male mice
Authors: Yoshida Keitaro , Drew Michael R. , Kono Anna , Mimura Masaru , Takata Norio , Tanaka Kenji F. 
Published: March 2021

AbstractChronic stress is a risk factor for a variety of psychiatric disorders, including depression. Although impairments to motivated behavior are a major symptom of clinical depression, little is known about the circuit mechanisms through which stress impairs motivation. Furthermore, research in animal models for depression has focused on impairments to hedonic aspects of motivation, whereas patient studies suggest that impairments to appetitive, goal-directed motivation contribute significantly to motivational impairments in depression. Here, we characterized goal-directed motivation in repeated social defeat stress (R-SDS), a well-established mouse model for depression in male mice. R-SDS impaired the ability to sustain and complete goal-directed behavior in a food-seeking operant lever-press task. Furthermore, stress-exposed mice segregated into susceptible and resilient subpopulations. Interestingly, susceptibility to stress-induced motivational impairments was unrelated to stress-induced social withdrawal, another prominent effect of R-SDS in mouse models. Based on evidence that ventral hippocampus (vHP) modulates sustainment of goal-directed behavior, we monitored vHP activity during the task using fiber photometry. Successful task completion was associated with suppression of ventral hippocampal neural activity. This suppression was diminished after R-SDS in stress-susceptible but not stress-resilient mice. The serotonin selective reuptake inhibitor (SSRI) escitalopram and ketamine both normalized vHP activity during the task and restored motivated behavior. Furthermore, optogenetic vHP inhibition was sufficient to restore motivated behavior after stress. These results identify vHP hyperactivity as a circuit mechanism of stress-induced impairments to goal-directed behavior and a putative biomarker that is sensitive to antidepressant treatments and that differentiates susceptible and resilient individuals.
Outcomes of phacoemulsification and endoscopic cyclophotocoagulation performed with dual blade ab interno trabeculectomy or trabecular micro-bypass stent insertion
Authors: Klug Emma , Chachanidze Marika , Nirappel Abraham , Chang Enchi K. , Hall Nathan , Chang Ta C. , Solá-Del Valle David 
Published: March 2021

Abstract
Background/Objective
To report the initial outcomes of phacoemulsification, endoscopic cyclophotocoagulation, and dual blade ab interno trabeculectomy (PEcK), and compare them to those of phacoemulsification, endoscopic cyclophotocoagulation, and trabecular micro-bypass stent insertion (ICE-1).

Subjects/Methods
Patients from January 2018 to December 2019 that underwent PEcK or ICE-1 at a tertiary referral centre were included in this retrospective comparative case series. Patients were excluded if they had additional concomitant procedures, less than 6 weeks (42 days) of follow-up or were not at least 18 years old. Intraocular pressure (IOP), number of glaucoma medications, and best-corrected visual acuity were collected preoperatively and postoperatively at 6 weeks, 3, 6, and 12 months. Kaplan–Meier survival analysis and Cox proportional-hazards regression were conducted to elucidate any factors associated with survival time.

Results
The mean preoperative IOP was 18.3 ± 5.9 mmHg in the PEcK group (53 eyes) and 14.7 ± 4.3 mmHg in the ICE-1 group (23 eyes) (p = 0.004) on 3.3 ± 1.3 and 1.7 ± 0.93 glaucoma medications (p < 0.001), respectively. Twelve months postoperatively the mean IOP reduction was 5.1 ± 4.4 mmHg and 2.3 ± 4.0 mmHg (p = 0.08), and the mean medication reduction was 1.6 ± 1.5 and 0.97 ± 0.66 (p = 0.10), in the PEcK and ICE-1 groups, respectively. Kaplan–Meier survival analysis did not reveal any differences in treatment survival.

Conclusions
Both PEcK and ICE-1 provide clinically relevant reductions in IOP and glaucoma medication burden, however the PEcK procedure may confer greater reductions in IOP. The procedures did not differ with regard to Kaplan–Meier survival probability.
PbEIL1 acts upstream ofPbCysp1to regulate ovule senescence in seedless pear
Authors: Wang Huibin , Zhang Haiqi , Liang Fangfang , Cong Liu , Song Linyan , Li Xieyu , Zhai Rui , Yang Chengquan , Wang Zhigang , Ma Fengwang , Xu Lingfei 
Published: March 2021

AbstractNumerous environmental and endogenous signals control the highly orchestrated and intricate process of plant senescence. Ethylene, a well-known inducer of senescence, has long been considered a key endogenous regulator of leaf and flower senescence, but the molecular mechanism of ethylene-induced ovule senescence has not yet been elucidated. In this study, we found that blockage of fertilization caused ovule abortion in the pear cultivar ‘1913’. According to transcriptome and phytohormone content data, ethylene biosynthesis was activated by pollination. At the same time, ethylene overaccumulated in ovules, where cells were sensitive to ethylene signals in the absence of fertilization. We identified a transcription factor in the ethylene signal response, ethylene-insensitive 3-like (EIL1), as a likely participant in ovule senescence. Overexpression of PbEIL1 in tomato caused precocious onset of ovule senescence. We further found that EIL1 could directly bind to the promoter of the SENESCENCE-ASSOCIATED CYSTEINE PROTEINASE 1 (PbCysp1) gene and act upstream of senescence. Yeast one-hybrid and dual-luciferase assays revealed the interaction of the transcription factor and the promoter DNA sequence and demonstrated that PbEIL1 enhanced the action of PbCysp1. Collectively, our results provide new insights into how ethylene promotes the progression of unfertilized ovule senescence.
Biosynthetic labeling with 3-O-propargylcaffeyl alcohol reveals in vivo cell-specific patterned lignification in loquat fruits during development and postharvest storage
Authors: Zhu Nan , Zhao Chenning , Wei Yuqing , Sun Chongde , Wu Di , Chen Kunsong 
Published: March 2021

AbstractLignification is a major cell wall modification that often results in the formation of sophisticated subcellular patterns during plant development or in response to environmental stresses. Precise localization of the spatiotemporal deposition of lignin is of great importance for revealing the lignification regulatory mechanism of individual cells. In loquat fruits, lignification typically increases the flesh lignin content and firmness, reducing their edibility and processing quality. However, the precise localization of the spatiotemporal active zones of lignification inside loquat fruit flesh remains poorly understood, and little is known about the contribution of patterned lignification to cell wall structure dynamics and the subsequent fruit-quality deterioration. Here, we performed an emerging bioorthogonal chemistry imaging technique to trace the in vivo patterned lignification dynamics in cells of loquat fruit flesh during development and storage. In developing fruits, lignified cells (LCs) and vascular bundles (VBs) were the zones of active lignification, and ring-like LCs deposited lignin at both the inner wall layer and the outer periphery sides. The domino effect of the generation of LCs was preliminarily visualized. In mature fruits, the newly formed lignin in the flesh of fruits during storage was specifically deposited in the corners and middle lamellae of parenchyma cells surrounding the VBs, resulting in the development of a reticular structure. Based on the findings, distinct spatiotemporal patterned lignification modes for different flesh cells in loquat fruits were proposed. These findings provide loquat lignification dynamics together with spatiotemporal data that can improve our understanding of the lignification process in planta.
The chromosome-level genome of dragon fruit reveals whole-genome duplication and chromosomal co-localization of betacyanin biosynthetic genes
Authors: Zheng Jinfang , Meinhardt Lyndel W. , Goenaga Ricardo , Zhang Dapeng , Yin Yanbin 
Published: March 2021

AbstractDragon fruits are tropical fruits economically important for agricultural industries. As members of the family ofCactaceae, they have evolved to adapt to the arid environment. Here we report the draft genome ofHylocereus undatus, commercially known as the white-fleshed dragon fruit. The chromosomal level genome assembly contains 11 longest scaffolds corresponding to the 11 chromosomes ofH. undatus. Genome annotation ofH. undatusfound ~29,000 protein-coding genes, similar toCarnegiea gigantea(saguaro). Whole-genome duplication (WGD) analysis revealed a WGD event in the last common ancestor ofCactaceaefollowed by extensive genome rearrangements. The divergence time betweenH. undatusandC. giganteawas estimated to be 9.18 MYA. Functional enrichment analysis of orthologous gene clusters (OGCs) in sixCactaceaeplants found significantly enriched OGCs in drought resistance. Fruit flavor-related functions were overrepresented in OGCs that are significantly expanded inH. undatus. TheH. undatusdraft genome also enabled the discovery of carbohydrate and plant cell wall-related functional enrichment in dragon fruits treated with trypsin for a longer storage time. Lastly, genes of the betacyanin (a red-violet pigment and antioxidant with a very high concentration in dragon fruits) biosynthetic pathway were found to be co-localized on a 12 Mb region of one chromosome. The consequence may be a higher efficiency of betacyanin biosynthesis, which will need experimental validation in the future. TheH. undatusdraft genome will be a great resource to study various cactus plants.
Evolution and universality of two-stage Kondo effect in single manganese phthalocyanine molecule transistors
Authors: Guo Xiao , Zhu Qiuhao , Zhou Liyan , Yu Wei , Lu Wengang , Liang Wenjie 
Published: March 2021

AbstractThe Kondo effect offers an important paradigm to understand strongly correlated many-body physics. Although under intensive study, some of the important properties of the Kondo effect, in systems where both itinerant coupling and localized coupling play significant roles, are still elusive. Here we report the evolution and universality of the two-stage Kondo effect, the simplest form where both couplings are important using single molecule transistor devices incorporating Manganese phthalocyanine molecules. The Kondo temperature T* of the two-stage Kondo effect evolves linearly against effective interaction of involved two spins. Observed Kondo resonance shows universal quadratic dependence with all adjustable parameters: temperature, magnetic field and biased voltages. The difference in nonequilibrium conductance of two-stage Kondo effect to spin 1/2 Kondo effect is also identified. Messages learned in this study fill in directive experimental evidence of the evolution of two-stage Kondo resonance near a quantum phase transition point, and help in understanding sophisticated molecular electron spectroscopy in a strong correlation regime.
Near quantitative synthesis of urea macrocycles enabled by bulky N-substituent
Authors: Yang Yingfeng , Ying Hanze , Li Zhixia , Wang Jiang , Chen Yingying , Luo Binbin , Gray Danielle L. , Ferguson Andrew , Chen Qian , Z Y. , Cheng Jianjun 
Published: March 2021

AbstractMacrocycles are unique molecular structures extensively used in the design of catalysts, therapeutics and supramolecular assemblies. Among all reactions reported to date, systems that can produce macrocycles in high yield under high reaction concentrations are rare. Here we report the use of dynamic hindered urea bond (HUB) for the construction of urea macrocycles with very high efficiency. Mixing of equal molar diisocyanate and hindered diamine leads to formation of macrocycles with discrete structures in nearly quantitative yields under high concentration of reactants. The bulky N-tert-butyl plays key roles to facilitate the formation of macrocycles, providing not only the kinetic control due to the formation of the cyclization-promoting cis C = O/tert-butyl conformation, but also possibly the thermodynamic stabilization of macrocycles with weak association interactions. The bulky N-tert-butyl can be readily removed by acid to eliminate the dynamicity of HUB and stabilize the macrocycle structures.
Whole-brain tissue mapping toolkit using large-scale highly multiplexed immunofluorescence imaging and deep neural networks
Authors: Maric Dragan , Jahanipour Jahandar , Li Xiaoyang Rebecca , Singh Aditi , Mobiny Aryan , Van Nguyen Hien , Sedlock Andrea , Grama Kedar , Roysam Badrinath 
Published: March 2021

AbstractMapping biological processes in brain tissues requires piecing together numerous histological observations of multiple tissue samples. We present a direct method that generates readouts for a comprehensive panel of biomarkers from serial whole-brain slices, characterizing all major brain cell types, at scales ranging from subcellular compartments, individual cells, local multi-cellular niches, to whole-brain regions from each slice. We use iterative cycles of optimized 10-plex immunostaining with 10-color epifluorescence imaging to accumulate highly enriched image datasets from individual whole-brain slices, from which seamless signal-corrected mosaics are reconstructed. Specific fluorescent signals of interest are isolated computationally, rejecting autofluorescence, imaging noise, cross-channel bleed-through, and cross-labeling. Reliable large-scale cell detection and segmentation are achieved using deep neural networks. Cell phenotyping is performed by analyzing unique biomarker combinations over appropriate subcellular compartments. This approach can accelerate pre-clinical drug evaluation and system-level brain histology studies by simultaneously profiling multiple biological processes in their native anatomical context.
Rise and fall of Landau’s quasiparticles while approaching the Mott transition
Authors: Pustogow Andrej , Saito Yohei , Löhle Anja , Sanz Alonso Miriam , Kawamoto Atsushi , Dobrosavljević Vladimir , Dressel Martin , Fratini Simone 
Published: March 2021

AbstractLandau suggested that the low-temperature properties of metals can be understood in terms of long-lived quasiparticles with all complex interactions included in Fermi-liquid parameters, such as the effective mass m⋆. Despite its wide applicability, electronic transport in bad or strange metals and unconventional superconductors is controversially discussed towards a possible collapse of the quasiparticle concept. Here we explore the electrodynamic response of correlated metals at half filling for varying correlation strength upon approaching a Mott insulator. We reveal persistent Fermi-liquid behavior with pronounced quadratic dependences of the optical scattering rate on temperature and frequency, along with a puzzling elastic contribution to relaxation. The strong increase of the resistivity beyond the Ioffe–Regel–Mott limit is accompanied by a ‘displaced Drude peak’ in the optical conductivity. Our results, supported by a theoretical model for the optical response, demonstrate the emergence of a bad metal from resilient quasiparticles that are subject to dynamical localization and dissolve near the Mott transition.
Metamaterial assisted illumination nanoscopy via random super-resolution speckles
Authors: Lee Yeon Ui , Zhao Junxiang , Ma Qian , Khorashad Larousse Khosravi , Posner Clara , Li Guangru , Wisna G. Bimananda M. , Burns Zachary , Zhang Jin , Liu Zhaowei 
Published: March 2021

AbstractStructured illumination microscopy (SIM) is one of the most powerful and versatile optical super-resolution techniques. Compared with other super-resolution methods, SIM has shown its unique advantages in wide-field imaging with high temporal resolution and low photon damage. However, traditional SIM only has about 2 times spatial resolution improvement compared to the diffraction limit. In this work, we propose and experimentally demonstrate an easily-implemented, low-cost method to extend the resolution of SIM, named speckle metamaterial-assisted illumination nanoscopy (speckle-MAIN). A metamaterial structure is introduced to generate speckle-like sub-diffraction-limit illumination patterns in the near field with improved spatial frequency. Such patterns, similar to traditional SIM, are then used to excite objects on top of the surface. We demonstrate that speckle-MAIN can bring the resolution down to 40 nm and beyond. Speckle-MAIN represents a new route for super-resolution, which may lead to important applications in bio-imaging and surface characterization.
Versatility in acyltransferase activity completes chicoric acid biosynthesis in purple coneflower
Authors: Fu Rao , Zhang Pingyu , Jin Ge , Wang Lianglei , Qi Shiqian , Cao Yang , Martin Cathie , Zhang Yang 
Published: March 2021

AbstractPurple coneflower (Echinacea purpurea(L.) Moench) is a popular native North American herbal plant. Its major bioactive compound, chicoric acid, is reported to have various potential physiological functions, but little is known about its biosynthesis. Here, taking an activity-guided approach, we identify two cytosolic BAHD acyltransferases that form two intermediates, caftaric acid and chlorogenic acid. Surprisingly, a unique serine carboxypeptidase-like acyltransferase uses chlorogenic acid as its acyl donor and caftaric acid as its acyl acceptor to produce chicoric acid in vacuoles, which has evolved its acyl donor specificity from the better-known 1-O-β-D-glucose esters typical for this specific type of acyltransferase to chlorogenic acid. This unusual pathway seems unique toEchinaceaspecies suggesting convergent evolution of chicoric acid biosynthesis. Using these identified acyltransferases, we have reconstituted chicoric acid biosynthesis in tobacco. Our results emphasize the flexibility of acyltransferases and their roles in the evolution of specialized metabolism in plants.
The flight of the hornbill: drift and diffusion in arboreal avian movement
Authors: Vikrant Ankit , Balakrishnan Janaki , Naniwadekar Rohit , Datta Aparajita 
Published: March 2021

AbstractCapturing movement of animals in mathematical models has long been a keenly pursued direction of research1. Any good model of animal movement is built upon information about the animal’s environment and the available resources including whether prey is in abundance or scarce, densely distributed or sparse2. Such an approach could enable the identification of certain quantities or measures from the model that are species-specific characteristics. We propose here a mechanistic model to describe the movement of two species of Asian hornbills in a resource-abundant heterogenous landscape which includes degraded forests and human settlements. Hornbill telemetry data was used to this end. The birds show a bias both towards features of attraction such as nesting and roosting sites as well as possible bias away from points of repulsion such as human presence. These biases are accounted for with suitable potentials. The spatial patterns of movement are analyzed using the Fokker–Planck equation, which helps explain the variation in movement of different individuals. Search times to target locations were calculated using first passage time equations dual to the Fokker–Planck equations. We also find that the diffusion coefficients are larger for breeding birds than for non-breeding ones—a manifestation of repeated switching of directions to move back to the nest from foraging sites. The degree of directedness towards nests and roosts is captured by the drift coefficients. Non-breeding hornbills show similar values of the ratio of the two coefficients irrespective of the fact that their movement data is available from different seasons. Therefore, the ratio of drift to diffusion coefficients is indicative of an individual’s breeding status, as seen from available data. It could possibly also characterize different species. For all individuals, first passage times increase with proximity to human settlements, in agreement with the premise that anthropogenic activities close to nesting/roosting sites are not desirable.
Identification of an alpha-1 antitrypsin variant with enhanced specificity for factor XIa by phage display, bacterial expression, and combinatorial mutagenesis
Authors: Bhakta Varsha , Hamada Mostafa , Nouanesengsy Amy , Lapierre Jessica , Perruzza Darian L. , Sheffield William P. 
Published: March 2021

AbstractCoagulation Factor XIa (FXIa) is an emerging target for antithrombotic agent development. The M358R variant of the serpin alpha-1 antitrypsin (AAT) inhibits both FXIa and other proteases. Our aim was to enhance the specificity of AAT M358R for FXIa. We randomized two AAT M358R phage display libraries at reactive centre loop positions P13-P8 and P7-P3 and biopanned them with FXIa. A bacterial expression library randomized at P2′-P3′ was also probed. Resulting novel variants were expressed as recombinant proteins in E. coli and their kinetics of FXIa inhibition determined. The most potent FXIa-inhibitory motifs were: P13-P8, HASTGQ; P7-P3, CLEVE; and P2-P3′, PRSTE (respectively, novel residues bolded). Selectivity for FXIa over thrombin was increased up to 34-fold versus AAT M358R for these single motif variants. Combining CLEVE and PRSTE motifs in AAT-RC increased FXIa selectivity for thrombin, factors XIIa, Xa, activated protein C, and kallikrein by 279-, 143-, 63-, 58-, and 36-fold, respectively, versus AAT M358R. AAT-RC lengthened human plasma clotting times less than AAT M358R. AAT-RC rapidly and selectively inhibits FXIa and is worthy of testing in vivo. AAT specificity can be focused on one target protease by selection in phage and bacterial systems coupled with combinatorial mutagenesis.
Principles of adaptive element spacing in linear array antennas
Authors: Mitha Tanzeela , Pour Maria 
Published: March 2021

AbstractA novel approach to linear array antennas with adaptive inter-element spacing is presented for the first time. The main idea is based upon electronically displacing the phase center location of the antenna elements, which determine their relative coordinates in the array configuration. This is realized by employing dual-mode microstrip patch antennas as a constitutive element, whose phase center location can be displaced from its physical center by simultaneously exciting two modes. The direction and the amount of displacement is controlled by the amplitude and phase of the modes at the element level. This in turn facilitates reconfiguring the inter-element spacing at the array level. For instance, a uniformly-spaced array could be electronically transformed into a non-uniform one without any mechanical means. The proposed idea is demonstrated in two- and three-element linear antenna arrays. The technique has the potential to control the radiation characteristics such as sidelobe levels, position of the nulls, and the beamwidths in small arrays, which are useful for adaptively controlling the array performance in emerging wireless communication systems and radars.