bluuebunny/crossref_metadata_2025_split huggingface dataset:
Chronic pathophysiological changes in the normal brain parenchyma caused by radiotherapy accelerate glioma progression
Authors: Tsuji Yuichiro , Nonoguchi Naosuke , Okuzaki Daisuke , Wada Yusuke , Motooka Daisuke , Hirota Yuki , Toho Taichiro , Yoshikawa Nobuhiko , Furuse Motomasa , Kawabata Shinji , Miyatake Shin-Ichi , Nakamura Hiroyuki , Yamamoto Ryohei , Nakamura Shota , Kuroiwa Toshihiko , Wanibuchi Masahiko 
Published: November 2021

AbstractRadiation therapy is one of standard treatment for malignant glioma after surgery. The microenvironment after irradiation is considered not to be suitable for the survival of tumor cells (tumor bed effect). This study investigated whether the effect of changes in the microenvironment of parenchymal brain tissue caused by radiotherapy affect the recurrence and progression of glioma. 65-Gy irradiation had been applied to the right hemisphere of Fisher rats. After 3 months from irradiation, we extracted RNA and protein from the irradiated rat brain. To study effects of proteins extracted from the brains, we performed WST-8 assay and tube formation assay in vitro. Cytokine production were investigated for qPCR. Additionally, we transplanted glioma cell into the irradiated and sham animals and the median survival time of F98 transplanted rats was also examined in vivo. Immunohistochemical analyses and invasiveness of implanted tumor were evaluated. X-ray irradiation promoted the secretion of cytokines such as CXCL12, VEGF-A, TGF-β1 and TNFα from the irradiated brain. Proteins extracted from the irradiated brain promoted the proliferation and angiogenic activity of F98 glioma cells. Glioma cells implanted in the irradiated brains showed significantly high proliferation, angiogenesis and invasive ability, and the post-irradiation F98 tumor-implanted rats showed a shorter median survival time compared to the Sham-irradiation group. The current study suggests that the microenvironment around the brain tissue in the chronic phase after exposure to X-ray radiation becomes suitable for glioma cell growth and invasion.
Radial analysis and scaling of urban land use
Authors: Lemoy Rémi , Caruso Geoffrey 
Published: November 2021

AbstractWe determine the functional form and scaling law of radial artificial land use profiles in 300 European functional urban areas (FUAs). These profiles, starting from a fully artificial surface in the city center, decrease exponentially, the faster the smaller the city. More precisely, the characteristic decrease distance scales like the square root of total population, meaning that the artificial surface of cities is proportional to their population. This also means that the amount of artificial land per capita is independent of city size, and that larger cities are not more or less parsimonious in terms of land use than smaller ones.
Dynamics of online hate and misinformation
Authors: Cinelli Matteo , Pelicon Andraž , Mozetič Igor , Quattrociocchi Walter , Novak Petra Kralj , Zollo Fabiana 
Published: November 2021

AbstractOnline debates are often characterised by extreme polarisation and heated discussions among users. The presence of hate speech online is becoming increasingly problematic, making necessary the development of appropriate countermeasures. In this work, we perform hate speech detection on a corpus of more than one million comments on YouTube videos through a machine learning model, trained and fine-tuned on a large set of hand-annotated data. Our analysis shows that there is no evidence of the presence of “pure haters”, meant as active users posting exclusively hateful comments. Moreover, coherently with the echo chamber hypothesis, we find that users skewed towards one of the two categories of video channels (questionable, reliable) are more prone to use inappropriate, violent, or hateful language within their opponents’ community. Interestingly, users loyal to reliable sources use on average a more toxic language than their counterpart. Finally, we find that the overall toxicity of the discussion increases with its length, measured both in terms of the number of comments and time. Our results show that, coherently with Godwin’s law, online debates tend to degenerate towards increasingly toxic exchanges of views.
Neurofilaments can differentiate ALS subgroups and ALS from common diagnostic mimics
Authors: Behzadi Arvin , Pujol-Calderón Fani , Tjust Anton E. , Wuolikainen Anna , Höglund Kina , Forsberg Karin , Portelius Erik , Blennow Kaj , Zetterberg Henrik , Andersen Peter Munch 
Published: November 2021

AbstractDelayed diagnosis and misdiagnosis are frequent in people with amyotrophic lateral sclerosis (ALS), the most common form of motor neuron disease (MND). Neurofilament light chain (NFL) and phosphorylated neurofilament heavy chain (pNFH) are elevated in ALS patients. We retrospectively quantified cerebrospinal fluid (CSF) NFL, CSF pNFH and plasma NFL in stored samples that were collected at the diagnostic work-up of ALS patients (n = 234), ALS mimics (n = 44) and controls (n = 9). We assessed the diagnostic performance, prognostication value and relationship to the site of onset and genotype. CSF NFL, CSF pNFH and plasma NFL levels were significantly increased in ALS patients compared to patients with neuropathies & myelopathies, patients with myopathies and controls. Furthermore, CSF pNFH and plasma NFL levels were significantly higher in ALS patients than in patients with other MNDs. Bulbar onset ALS patients had significantly higher plasma NFL levels than spinal onset ALS patients. ALS patients withC9orf72HRE mutations had significantly higher plasma NFL levels than patients with SOD1 mutations. Survival was negatively correlated with all three biomarkers. Receiver operating characteristics showed the highest area under the curve for CSF pNFH for differentiating ALS from ALS mimics and for plasma NFL for estimating ALS short and long survival. All three biomarkers have diagnostic value in differentiating ALS from clinically relevant ALS mimics. Plasma NFL levels can be used to differentiate between clinical and genetic ALS subgroups.
Blocked O-GlcNAc cycling alters mitochondrial morphology, function, and mass
Authors: Akinbiyi Elizabeth O. , Abramowitz Lara K. , Bauer Brianna L. , Stoll Maria S. K. , Hoppel Charles L. , Hsiao Chao-Pin , Hanover John A. , Mears Jason A. 
Published: November 2021

AbstractO-GlcNAcylation is a prevalent form of glycosylation that regulates proteins within the cytosol, nucleus, and mitochondria. The O-GlcNAc modification can affect protein cellular localization, function, and signaling interactions. The specific impact of O-GlcNAcylation on mitochondrial morphology and function has been elusive. In this manuscript, the role of O-GlcNAcylation on mitochondrial fission, oxidative phosphorylation (Oxphos), and the activity of electron transport chain (ETC) complexes were evaluated. In a cellular environment with hyper O-GlcNAcylation due to the deletion of O-GlcNAcase (OGA), mitochondria showed a dramatic reduction in size and a corresponding increase in number and total mitochondrial mass. Because of the increased mitochondrial content, OGA knockout cells exhibited comparable coupled mitochondrial Oxphos and ATP levels when compared to WT cells. However, we observed reduced protein levels for complex I and II when comparing normalized mitochondrial content and reduced linked activity for complexes I and III when examining individual ETC complex activities. In assessing mitochondrial fission, we observed increased amounts of O-GlcNAcylated dynamin-related protein 1 (Drp1) in cells genetically null for OGA and in glioblastoma cells. Individual regions of Drp1 were evaluated for O-GlcNAc modifications, and we found that this post-translational modification (PTM) was not limited to the previously characterized residues in the variable domain (VD). Additional modification sites are predicted in the GTPase domain, which may influence enzyme activity. Collectively, these results highlight the impact of O-GlcNAcylation on mitochondrial dynamics and ETC function and mimic the changes that may occur during glucose toxicity from hyperglycemia.
The human TRAM1 locus expresses circular RNAs
Authors: Dubois Josephine , Sczakiel Georg 
Published: November 2021

AbstractNumerous indirect and in silico produced evidences suggest circular RNAs (circRNA) in mammals while thorough experimental proofs of their existence have rarely been reported. Biological studies of circRNA, however, should be based on experimentally verified circRNAs. Here, we describe the identification of two circRNAs originating from the gene locus of the translocation associated membrane protein 1 (TRAM1). Linear and potentially circular TRAM1-specific transcripts were identified in a transcriptome analysis of urine RNA of bladder cancer (BCa) patients versus healthy donors. Thus, we first focused on the topology of TRAM1-specific transcripts. We describe conclusive experimental evidence for the existence of TRAM1-specific circRNAs in the human BCa cell lines ECV-304 and RT-4. PCR-based methodology followed by cloning and sequencing strongly indicated the circular topology of two TRAM1 RNAs. Further, studies with exon fusion sequence-specific antisense oligonucleotides (asON) and RNase H as well as studies in the use of RNase R contribute to conclusive set of experiments supporting the circular topology of TRAM1 transcripts. On the biological side, TRAM1-specific circRNAs showed low expression levels and minor differences in BCa cell lines while linear TRAM1 transcripts displayed down-regulated expression in the higher cancer stage model ECV-304 versus more differentiated RT-4 cells.
The Quaternary Kurobegawa Granite: an example of a deeply dissected resurgent pluton
Authors: Ito Hisatoshi , Adachi Yoshiko , Cambeses Aitor , Bea Fernando , Fukuyama Mayuko , Fukuma Koji , Yamada Ryuji , Kubo Takashi , Takehara Mami , Horie Kenji 
Published: November 2021

AbstractThe Quaternary Kurobegawa Granite, central Japan, is not only the youngest known granitic pluton exposed on the Earth’s surface, it is one of few localities where both Quaternary volcanics and related plutons are well exposed. Here, we present new zircon U–Pb ages together with whole rock and mineral geochemical data, revealing that the Kurobegawa Granite is a resurgent pluton that was emplaced following the caldera-forming eruption of the Jiigatake Volcanics at 1.55 ± 0.09 Ma. Following the eruption, the remnant magma chamber progressively cooled forming the voluminous Kurobegawa pluton in the upper crust (~ 6 km depth) until ~ 0.7 Ma when resurgence caused rapid uplift and erosion in the region. This is the first study to document the detailed spatiotemporal evolution of resurgent pluton for a Quaternary caldera system. Our new findings may contribute significantly to understanding the fate of active caldera systems that can produce supereruptions.
Defining skin aging and its risk factors: a systematic review and meta-analysis
Authors: Wong Qi Yi Ambrose , Chew Fook Tim 
Published: November 2021

AbstractSkin aging has been defined to encompass both intrinsic and extrinsic aging, with extrinsic aging effected by environmental influences and overlaying the effects of chronological aging. The risk factors of skin aging have been studied previously, using methods of quantifying skin aging. However, these studies have yet to be reviewed. To better understand skin aging risk factors and collate the available data, we aimed to conduct a systematic review and meta-analysis. We conducted our systematic review in compliance with Preferred Reporting Item for Systematic Review and Meta-Analyses (PRISMA) guidelines. Embase, PubMed and Web of Science databases were searched in October 2020 using specific search strategies. Where odds ratios were reported, meta-analyses were conducted using the random effects model. Otherwise, significant factors were reported in this review. We identified seven notable risk factors for various skin aging phenotypes: age, gender, ethnicity, air pollution, nutrition, smoking, sun exposure. This review’s results will guide future works, such as those aiming to examine the interaction between genetic and environmental influences.
Transcriptome based identification and validation of heat stress transcription factors in wheat progenitor species Aegilops speltoides
Authors: Seni Sushmita , Kaur Satinder , Malik Palvi , Yadav Inderjit Singh , Sirohi Parul , Chauhan Harsh , Kaur Amandeep , Chhuneja Parveen 
Published: November 2021

AbstractWheat, one of the major cereal crops worldwide, get adversely affected by rising global temperature. We have identified the diploid B genome progenitor of wheat, Aegilops speltoides (SS), as a potential donor for heat stress tolerance. Therefore, the present work was planned to study the total transcriptome profile of heat stress-tolerant Ae. speltoides accession pau3809 (AS3809) and compare with that of tetraploid and hexaploid wheat cultivars PDW274 and PBW725, respectively. The comparative transcriptome was utilized to identify and validate heat stress transcription factors (HSFs), the key genes involved in imparting heat stress tolerance. Transcriptome analysis led to the identification of a total of 74 K, 68 K, and 76 K genes in AS3809, PDW274, and PBW725, respectively. There was a high uniformity of GO profiles under the biological, molecular, and cellular functions across the three wheat transcriptomes, suggesting the conservation of gene function. Twelve HSFs having the highest FPKM value were identified in the AS3809 transcriptome data, while six of these HSFs namely HSFA3, HSFA5, HSFA9, HSFB2a, HSFB2b, and HSFC1b, were validated with qRT PCR. These six HSFs were identified as an important component of thermotolerance in AS3809 as evident from their comparative higher expression under heat stress.
Antibody-guided design and identification of CD25-binding small antibody mimetics using mammalian cell surface display
Authors: See Kyra , Kadonosono Tetsuya , Miyamoto Kotaro , Tsubaki Takuya , Ota Yumi , Katsumi Marina , Ryo Sumoe , Aida Kazuki , Minegishi Misa , Isozaki Tatsuhiro , Kuchimaru Takahiro , Kizaka-Kondoh Shinae 
Published: November 2021

AbstractSmall antibody mimetics that contain high-affinity target-binding peptides can be lower cost alternatives to monoclonal antibodies (mAbs). We have recently developed a method to create small antibody mimetics called FLuctuation-regulated Affinity Proteins (FLAPs), which consist of a small protein scaffold with a structurally immobilized target-binding peptide. In this study, to further develop this method, we established a novel screening system for FLAPs called monoclonal antibody-guided peptide identification and engineering (MAGPIE), in which a mAb guides selection in two manners. First, antibody-guided design allows construction of a peptide library that is relatively small in size, but sufficient to identify high-affinity binders in a single selection round. Second, in antibody-guided screening, the fluorescently labeled mAb is used to select mammalian cells that display FLAP candidates with high affinity for the target using fluorescence-activated cell sorting. We demonstrate the reliability and efficacy of MAGPIE using daclizumab, a mAb against human interleukin-2 receptor alpha chain (CD25). Three FLAPs identified by MAGPIE bound CD25 with dissociation constants of approximately 30 nM as measured by biolayer interferometry without undergoing affinity maturation. MAGPIE can be broadly adapted to any mAb to develop small antibody mimetics.
Bloodletting has no effect on the blood pressure abnormalities of hyperandrogenic women taking oral contraceptives in a randomized clinical trial
Authors: Luque-Ramírez Manuel , Ortiz-Flores Andrés E. , Nattero-Chávez Lía , Martínez-García M.Ángeles , Insenser María , Álvarez-Blasco Francisco , Fernández-Durán Elena , Quintero-Tobar Alejandra , de Lope Quiñones Sara , Escobar-Morreale Héctor F. 
Published: November 2021

AbstractNormoferritinemic women with functional hyperandrogenism show a mild iron overload. Iron excess, hyperandrogenism, and cardioautonomic dysfunction contribute to blood pressure (BP) abnormalities in these patients. Furthermore, combined oral contraceptives (COC) prescribed for hyperandrogenic symptoms may worse BP recordings. Iron depletion by phlebotomy appears to lower BP in other acquired iron overload conditions. We aimed to determine the effect of iron depletion on the office BP, ambulatory BP monitoring, and frequency of hypertension in patients with functional hyperandrogenism submitted to standard therapy with COC. We conducted a phase 2 randomized, controlled, parallel, open-label clinical trial (NCT02460445) in adult women with functional hyperandrogenism including hyperandrogenic polycystic ovary syndrome and idiopathic hyperandrogenism. After a 3-month run-in period of treatment with 35 µg ethinylestradiol plus 2 mg cyproterone acetate, participants were randomized (1:1) to three scheduled bloodlettings or observation for another 9 months. Main outcome measures were the changes in office BP, 24-h-ambulatory BP, and frequency of hypertension in both study arms. From June 2015 to June 2019, 33 women were included in the intention-to-treat analyses. We observed an increase in mean office systolic BP [mean of the differences (MD): 2.5 (0.3–4.8) mmHg] and night-time ambulatory systolic BP [MD 4.1 (1.4–6.8) mmHg] after 3 months on COC. The percentage of nocturnal BP non-dippers also increased, from 28.1 to 92.3% (P < 0.001). Office and ambulatory BP did not change throughout the experimental period of the trial, both when considering all women as a whole or as a function of the study arm. The frequency of the non-dipping pattern in BP decreased during the experimental period [OR 0.694 (0.577–0.835), P < 0.001], regardless of the study arm. Decreasing iron stores by scheduled bloodletting does not override the BP abnormalities caused by COC in women with functional hyperandrogenism.
Shifting seasonality of cyclones and western boundary current interactions in Bay of Bengal as observed during Amphan and Fani
Authors: Sil Sourav , Gangopadhyay Avijit , Gawarkiewicz Glen , Pramanik Saikat 
Published: November 2021

AbstractIn recent years, the seasonal patterns of Tropical Cyclones (TC) in the Bay of Bengal have been shifting. While tropical depressions have been common in March–May (spring), they typically have been relatively weaker than the TCs during October–December. Here we show that the spatial pattern of recent warming trends during the last two decades in the southwestern Bay has allowed for stronger springtime pre-monsoon cyclones such as Amphan (May 2020, Super Cyclone) and Fani (April–May 2019, Extremely Severe Cyclone). The tracks of the pre-monsoon cyclones shifted westward, concurrent with an increasing rate of warming. This shift allowed both Fani and Amphan tracks to cross the northeastward warm Western Boundary Current (WBC) and associated warm anti-cyclonic eddies, while the weaker Viyaru (April 2013, Cyclonic Storm) did not interact with the WBC. A quantitative model linking the available along-track heat potential to cyclone’s intensity is developed to understand the impact of the WBC on cyclone intensification. The influence of the warming WBC and associated anti-cyclonic eddies will likely result in much stronger springtime TCs becoming relatively common in the future.
Pollination success increases with plant diversity in high-Andean communities
Authors: Gavini Sabrina S. , Sáez Agustín , Tur Cristina , Aizen Marcelo A. 
Published: November 2021

AbstractPollinator-mediated plant–plant interactions have traditionally been viewed within the competition paradigm. However, facilitation via pollinator sharing might be the rule rather than the exception in harsh environments. Moreover, plant diversity could be playing a key role in fostering pollinator-mediated facilitation. Yet, the facilitative effect of plant diversity on pollination remains poorly understood, especially under natural conditions. By examining a total of 9371 stigmas of 88 species from nine high-Andean communities in NW Patagonia, we explored the prevalent sign of the relation between conspecific pollen receipt and heterospecific pollen diversity, and assessed whether the incidence of different outcomes varies with altitude and whether pollen receipt relates to plant diversity. Conspecific pollen receipt increased with heterospecific pollen diversity on stigmas. In all communities, species showed either positive or neutral but never negative relations between the number of heterospecific pollen donor species and conspecific pollen receipt. The incidence of species showing positive relations increased with altitude. Finally, stigmas collected from communities with more co-flowering species had richer heterospecific pollen loads and higher abundance of conspecific pollen grains. Our findings suggest that plant diversity enhances pollination success in high-Andean plant communities. This study emphasizes the importance of plant diversity in fostering indirect plant–plant facilitative interactions in alpine environments, which could promote species coexistence and biodiversity maintenance.
No difference in mid-term outcome after superior vs. anteroinferior plate position for displaced midshaft clavicle fractures
Authors: Nolte Philip-Christian , Tross Anna-Katharina , Studniorz Julia , Grützner Paul-Alfred , Guehring Thorsten , Schnetzke Marc 
Published: November 2021

AbstractTo compare outcomes, complications, revisions, and rates of implant removal of superior compared to anteroinferior plating in displaced midshaft clavicle fractures at mid-term follow-up. We retrospectively reviewed 79 patients who underwent operative treatment for displaced midshaft clavicle fractures (Group A: 28 patients with superior plating; Group B: 51 patients with anteroinferior plating) that were at least 2 years postoperatively. Adjusted Constant Score (aCS), Visual Analog Scale (VAS), and Quick Disabilities of the Arm, Shoulder and Hand (QuickDASH) score were compared. Bone union, implant removal, complications and revision surgeries were assessed. Group A had a significantly higher aCS compared to group B (90, IQR: 85.0–91.0 vs. 91, IQR: 90.0–93.0; P = 0.037). No significant differences between groups were seen in VAS (P = 0.283) and QuickDASH (P = 0.384). Bone union was achieved in 76 patients (96.2%) with no significant differences between groups (Group A: 96.4% vs. Group B: 96.1%; P > 0.999). There were no significant differences in implant removal rates (Group A: 60.7% vs. Group B: 66.7%; P = 0.630), complications (Group A: 46.4% vs. Group B: 31.4%; P = 0.226) and revisions (Group A: 25% vs. Group B: 9.8%; P = 0.102). Superior and anteroinferior plating result in high bone union rates and good clinical outcomes with similar rates of plate removal.