bluuebunny/crossref_metadata_2025_split huggingface dataset:
Regionally Variable Responses of Nitrogen Fixation to Iron and Phosphorus Enrichment in the Pacific Ocean
Authors: Tanita Iwao , Shiozaki Takuhei , Kodama Taketoshi , Hashihama Fuminori , Sato Mitsuhide , Takahashi Kazutaka , Furuya Ken 
Published: August 2021

AbstractIron and phosphorus are major nutrients limiting marine nitrogen fixation. We directly assessed iron and phosphate enrichment using the surface water of the western and central North Pacific subtropical gyre (NPSG), central equatorial Pacific, and eastern South Pacific subtropical gyre (SPSG). Diazotrophic phylotypes showed regionally distinct distribution patterns. The abundances of nifH in UCYN‐A, Trichodesmium, Crocosphaera, and γ‐24774A11 and filaments of Richelia were significantly higher in the central and western NPSG than in the eastern SPSG. The surface dissolved iron concentration was <0.2 nmol l−1 in most of the regions; however, nitrogen fixation was enhanced by the addition of iron only in the western NPSG and equatorial upwelling. In the western NPSG, where surface phosphate was almost exhausted, and levels varied below 7 nmol l−1, diazotrophs also exhibited either phosphate limitation or colimitation by iron and phosphate. The present study demonstrated the limitation of nitrogen fixation by iron and phosphorus individually and colimitation by iron and phosphorus in the western NPSG for the first time, and the data showed that the nutrients limiting nitrogen fixation in the Pacific Ocean differed among the regions, indicating that the response of nitrogen fixation to environmental changes is not uniform.
VAV2 is required for DNA repair and implicated in cancer radiotherapy resistance
Authors: Liu Weiling , Miao Chuanwang , Zhang Shaosen , Liu Yachen , Niu Xiangjie , Xi Yiyi , Guo Wenjia , Chu Jiahui , Lin Ai , Liu Hongjin , Yang Xinyu , Chen Xinjie , Zhong Ce , Ma Yuling , Wang Yuqian , Zhu Shihao , Liu Shuning , Tan Wen , Lin Dongxin , Wu Chen 
Published: August 2021

AbstractRadiotherapy remains the mainstay for treatment of various types of human cancer; however, the clinical efficacy is often limited by radioresistance, in which the underlying mechanism is largely unknown. Here, using esophageal squamous cell carcinoma (ESCC) as a model, we demonstrate that guanine nucleotide exchange factor 2 (VAV2), which is overexpressed in most human cancers, plays an important role in primary and secondary radioresistance. We have discovered for the first time that VAV2 is required for the Ku70/Ku80 complex formation and participates in non-homologous end joining repair of DNA damages caused by ionizing radiation. We show that VAV2 overexpression substantially upregulates signal transducer and activator of transcription 1 (STAT1) and the STAT1 inhibitor Fludarabine can significantly promote the sensitivity of radioresistant patient-derived ESCC xenografts in vivo in mice to radiotherapy. These results shed new light on the mechanism of cancer radioresistance, which may be important for improving clinical radiotherapy.
Alteration of NMDA receptor trafficking as a cellular hallmark of psychosis
Authors: Espana Agnès , Seth Henrik , Jézéquel Julie , Huang Tingting , Bouchet Delphine , Lepleux Marylin , Gréa Hélène , Bechter Karl , Schneider Marion , Hanse Eric , Groc Laurent 
Published: August 2021

AbstractA dysfunction of the glutamatergic transmission, especially of the NMDA receptor (NMDAR), constitutes one of the main biological substrate of psychotic disorders, such as schizophrenia. The NMDAR signaling hypofunction, through genetic and/or environmental insults, would cause a neurodevelopmental myriad of molecular, cellular, and network alterations that persist throughout life. Yet, the mechanisms underpinning NMDAR dysfunctions remain elusive. Here, we compared the membrane trafficking of NMDAR in three gold-standard models of schizophrenia, i.e., patient’s cerebrospinal fluids, genetic manipulations of susceptibility genes, and prenatal developmental alterations. Using a combination of single nanoparticle tracking, electrophysiological, biochemical, and behavioral approaches in rodents, we identified that the NMDAR trafficking in hippocampal neurons was consistently altered in all these different models. Artificial manipulations of the NMDAR surface dynamics with competing ligands or antibody-induced receptor cross-link in the developing rat brain were sufficient to regulate the adult acoustic startle reflex and compensate for an early pathological challenge. Collectively, we show that the NMDAR trafficking is markedly altered in all clinically relevant models of psychosis, opening new avenues of therapeutical strategies.
Circulating mature dendritic cells homing to the thymus promote thymic epithelial cells involution via the Jagged1/Notch3 axis
Authors: Wu Haojie , Li Xiaohan , Zhou Chen , Yu Qihong , Ge Shiyao , Pan Zihui , Zhao Yangjing , Xia Sheng , Zhou Xiaoming , Liu Xia , Wang Hui , Shao Qixiang 
Published: August 2021

AbstractMultiple proinflammatory conditions, including chemotherapy, radiotherapy, transplant rejection, and microbial infections, have been identified to induce involution of the thymus. However, the underlying cellular and molecular mechanisms of these inflammatory conditions inducing apoptosis of thymic epithelial cells (TECs), the main components of the thymus, remain largely unknown. In the circulation, mature dendritic cells (mDCs), the predominant initiator of innate and adaptive immune response, can migrate into the thymus. Herein, we demonstrated that mDCs were able to directly inhibit TECs proliferation and induce their apoptosis by activating the Jagged1/Notch3 signaling pathway. Intrathymic injection of either mDCs or recombinant mouse Jagged1-human Fc fusion protein (rmJagged1-hFc) into mice resulted in acute atrophy of the thymus. Furthermore, DAPT, a γ-secretase inhibitor, reversed the effects induced by mDC or rmJagged1-hFc. These findings suggest that acute or aging-related thymus degeneration can be induced either by mass migration of circulating mDCs in a short period of time or by a few but constantly homing mDCs.
Adropin correlates with aging-related neuropathology in humans and improves cognitive function in aging mice
Authors: Banerjee Subhashis , Ghoshal Sarbani , Girardet Clemence , DeMars Kelly M. , Yang Changjun , Niehoff Michael L. , Nguyen Andrew D. , Jayanth Prerana , Hoelscher Brittany A. , Xu Fenglian , Banks William A. , Hansen Kim M. , Zhang Jinsong , Candelario-Jalil Eduardo , Farr Susan A. , Butler Andrew A. 
Published: August 2021

AbstractThe neural functions of adropin, a secreted peptide highly expressed in the brain, have not been investigated. In humans, adropin is highly expressed in astrocytes and peaks during critical postnatal periods of brain development. Gene enrichment analysis of transcripts correlating with adropin expression suggests processes relevant to aging-related neurodegenerative diseases that vary with age and dementia state, possibly indicating survivor bias. In people aged <40 y and ‘old-old’ (>75 y) diagnosed with dementia, adropin correlates positively with genes involved in mitochondrial processes. In the ‘old-old’ without dementia adropin expression correlates positively with morphogenesis and synapse function. Potent neurotrophic responses in primary cultured neurons are consistent with adropin supporting the development and function of neural networks. Adropin expression in the ‘old-old’ also correlates positively with protein markers of tau-related neuropathologies and inflammation, particularly in those without dementia. How variation in brain adropin expression affects neurological aging was investigated using old (18-month) C57BL/6J mice. In mice adropin is expressed in neurons, oligodendrocyte progenitor cells, oligodendrocytes, and microglia and shows correlative relationships with groups of genes involved in neurodegeneration and cellular metabolism. Increasing adropin expression using transgenesis improved spatial learning and memory, novel object recognition, resilience to exposure to new environments, and reduced mRNA markers of inflammation in old mice. Treatment with synthetic adropin peptide also reversed age-related declines in cognitive functions and affected expression of genes involved in morphogenesis and cellular metabolism. Collectively, these results establish a link between adropin expression and neural energy metabolism and indicate a potential therapy against neurological aging.
Spatio-seasonal variation of water quality influenced by land use and land cover in Lake Muhazi
Authors: Umwali Edovia Dufatanye , Kurban Alishir , Isabwe Alain , Mind’je Richard , Azadi Hossein , Guo Zengkun , Udahogora Madeleine , Nyirarwasa Anathalie , Umuhoza Jeanine , Nzabarinda Vincent , Gasirabo Aboubakar , Sabirhazi Gulnur 
Published: August 2021

AbstractUnderstanding the influence of land use/land cover (LULC) on water quality is pertinent to sustainable water management. This study aimed at assessing the spatio-seasonal variation of water quality in relation to land use types in Lake Muhazi, Rwanda. The National Sanitation Foundation Water Quality Index (NSF-WQI) was used to evaluate the anthropogenically-induced water quality changes. In addition to Principal Components Analysis (PCA), a Cluster Analysis (CA) was applied on 12-clustered sampling sites and the obtained NSF-WQI. Lastly, the Partial Least Squares Path Modelling (PLS-PM) was used to estimate the nexus between LULC, water quality parameters, and the obtained NSF-WQI. The results revealed a poor water quality status at the Mugorore and Butimba sites in the rainy season, then at Mugorore and Bwimiyange sites in the dry season. Furthermore, PCA displayed a sample dispersion based on seasonality while NSF-WQI’s CA hierarchy grouped the samples corresponding to LULC types. Finally, the PLS-PM returned a strong positive correlation (+ 0.831) between LULCs and water quality parameters in the rainy season but a negative correlation coefficient (− 0.542) in the dry season, with great influences of cropland on the water quality parameters. Overall, this study concludes that the lake is seasonally influenced by anthropogenic activities, suggesting sustainable land-use management decisions, such as the establishment and safeguarding protection belts in the lake vicinity.
Cardiac mechanics and incident ischemic stroke: the Cardiovascular Health Study
Authors: Kamel Hooman , Bartz Traci M. , Longstreth W. T. , Elkind Mitchell S. V. , Gottdiener John , Kizer Jorge R. , Gardin Julius M. , Kim Jiwon , Shah Sanjiv 
Published: August 2021

AbstractRecent evidence indicates that our understanding of the relationship between cardiac function and ischemic stroke remains incomplete. The Cardiovascular Health Study enrolled community-dwelling adults ≥ 65 years old. We included participants with speckle-tracking data from digitized baseline study echocardiograms. Exposures were left atrial reservoir strain (primary), left ventricular longitudinal strain, left ventricular early diastolic strain rate, septal e’ velocity, and lateral e’ velocity. The primary outcome was incident ischemic stroke. Cox proportional hazards models were adjusted for demographics, image quality, and risk factors including left ventricular ejection fraction and incident atrial fibrillation. Among 4,000 participants in our analysis, lower (worse) left atrial reservoir strain was associated with incident ischemic stroke (HR per SD absolute decrease, 1.14; 95% CI 1.04–25). All secondary exposure variables were significantly associated with the outcome. Left atrial reservoir strain was associated with cardioembolic stroke (HR per SD absolute decrease, 1.42; 95% CI 1.21–1.67) and cardioembolic stroke related to incident atrial fibrillation (HR per SD absolute decrease, 1.60; 1.32–1.95). Myocardial dysfunction that can ultimately lead to stroke may be identifiable at an early stage. This highlights opportunities to identify cerebrovascular risk earlier and improve stroke prevention via therapies for early myocardial dysfunction.
Use of transcriptomic profiling to identify candidate genes involved in Polyporus umbellatus sclerotial formation affected by oxalic acid
Authors: Xing Yong-Mei , Li Bing , Zeng Xu , Zhou Li-Si , Lee Tae-Soo , Lee Min-Woong , Chen Xiao-Mei , Guo Shun-Xing 
Published: August 2021

AbstractPolyporus umbellatus is a precious medicinal fungus. Oxalic acid was observed to affect sclerotial formation and sclerotia possessed more medicinal compounds than mycelia. In this study, the transcriptome of P. umbellatus was analysed after the fungus was exposed to various concentrations of oxalic acid. The differentially expressed genes (DEGs) encoding a series of oxidases were upregulated, and reductases were downregulated, in the low-oxalic-acid (Low OA) group compared to the control (No OA) group, while the opposite phenomenon was observed in the high-oxalic-acid (High OA) group. The detection of reactive oxygen species (ROS) in P. umbellatus mycelia was performed visually, and Ca2+ and H2O2 fluxes were measured using non-invasive micro-test technology (NMT). The sclerotial biomass in the Low OA group increased by 66%, however, no sclerotia formed in the High OA group. The ROS fluorescence intensity increased significantly in the Low OA group but decreased considerably in the High OA group. Ca2+ and H2O2 influx significantly increased in the Low OA group, while H2O2 exhibited efflux in the High OA group. A higher level of oxidative stress formed in the Low OA group. Different concentrations of oxalic acid were determined to affect P. umbellatus sclerotial formation in different ways.
Molecular-dynamics-simulation-guided membrane engineering allows the increase of membrane fatty acid chain length in Saccharomyces cerevisiae
Authors: Maertens Jeroen M. , Scrima Simone , Lambrughi Matteo , Genheden Samuel , Trivellin Cecilia , Eriksson Leif A. , Papaleo Elena , Olsson Lisbeth , Bettiga Maurizio 
Published: August 2021

AbstractThe use of lignocellulosic-based fermentation media will be a necessary part of the transition to a circular bio-economy. These media contain many inhibitors to microbial growth, including acetic acid. Under industrially relevant conditions, acetic acid enters the cell predominantly through passive diffusion across the plasma membrane. The lipid composition of the membrane determines the rate of uptake of acetic acid, and thicker, more rigid membranes impede passive diffusion. We hypothesized that the elongation of glycerophospholipid fatty acids would lead to thicker and more rigid membranes, reducing the influx of acetic acid. Molecular dynamics simulations were used to predict the changes in membrane properties. Heterologous expression of Arabidopsis thaliana genes fatty acid elongase 1 (FAE1) and glycerol-3-phosphate acyltransferase 5 (GPAT5) increased the average fatty acid chain length. However, this did not lead to a reduction in the net uptake rate of acetic acid. Despite successful strain engineering, the net uptake rate of acetic acid did not decrease. We suggest that changes in the relative abundance of certain membrane lipid headgroups could mitigate the effect of longer fatty acid chains, resulting in a higher net uptake rate of acetic acid.
Exact density matrix elements for a driven dissipative system described by a quadratic Hamiltonian
Authors: Saedi Sh. , Kheirandish F. 
Published: August 2021

AbstractFor a prototype quadratic Hamiltonian describing a driven, dissipative system, exact matrix elements of the reduced density matrix are obtained from a generating function in terms of the normal characteristic functions. The approach is based on the Heisenberg equations of motion and operator calculus. The special and limiting cases are discussed.
Nicotine self-administration with menthol and audiovisual cue facilitates differential packaging of CYP2A6 and cytokines/chemokines in rat plasma extracellular vesicles
Authors: Kumar Asit , Sinha Namita , Haque Sanjana , Kodidela Sunitha , Wang Tengfei , Martinez Angel G. , Chen Hao , Kumar Santosh 
Published: August 2021

AbstractIn this study, we investigated whether intravenously self-administered nicotine with menthol and audiovisual cue modulates nicotine-metabolizing CYP2A6, oxidative stress modulators, and cytokines/chemokines in plasma extracellular vesicles (EVs) in rats. We assigned rats to self-administered nicotine with: (a) audiovisual cue (AV), (b) menthol, and (c) menthol and AV cue. We found increased levels of CD9 in plasma EVs after self-administered nicotine with menthol and AV cue. Moreover, expression of CYP2A6 in plasma EVs was significantly increased after self-administered nicotine in response to menthol and AV cue. However, despite an upward trend on SOD1 and catalase, increase was not found to be statistically significant, while total antioxidant capacity was found to be significantly increased in plasma and plasma EVs obtained after self-administered nicotine with menthol and AV cue. Among cytokine and chemokine profiling, we found a significant increase in the levels of MCP-1 after self-administered nicotine with menthol and AV cue and complete packaging of IL-1β in EVs. Taken together, the study provides evidence that nicotine in response to menthol and AV cues can package altered levels of CYP2A6, and cytokines/chemokines in plasma EVs that may contribute to cell–cell communication, nicotine metabolism, and inflammation upon cigarette smoking.
Differences in synaptic vesicle pool behavior between male and female hippocampal cultured neurons
Authors: Sertel Sinem M. , Blumenstein Wiebke , Mandad Sunit , Shomroni Orr , Salinas Gabriela , Rizzoli Silvio O. 
Published: August 2021

AbstractA strong focus on sex-related differences has arisen recently in neurobiology, but most investigations focus on brain function in vivo, ignoring common experimental models like cultured neurons. A few studies have addressed morphological differences between male and female neurons in culture, but very few works focused on functional aspects, and especially on presynaptic function. To fill this gap, we studied here functional parameters of synaptic vesicle recycling in hippocampal cultures from male and female rats, which are a standard model system for many laboratories. We found that, although the total vesicle pools are similar, the recycling pool of male synapses was larger, and was more frequently used. This was in line with the observation that the male synapses engaged in stronger local translation. Nevertheless, the general network activity of the neurons was similar, and only small differences could be found when stimulating the cultures. We also found only limited differences in several other assays. We conclude that, albeit these cultures are similar in behavior, future studies of synapse behavior in culture should take the sex of the animals into account.
Detection of Borrelia burgdorferi antigens in tissues and plasma during early infection in a mouse model
Authors: Dolange Victoria , Simon Stéphanie , Morel Nathalie 
Published: August 2021

AbstractBorrelia burgdorferi is the causative agent of Lyme borreliosis, which is the most common tick-borne human disease in Europe and North America. Currently, the diagnosis of Lyme borreliosis is based on serological tests allowing indirect detection of anti-Borrelia antibodies produced by patients. Their main drawback is a lack of sensitivity in the early phase of disease and an incapacity to prove an active infection. Direct diagnostic tests are clearly needed. The objectives of this study were to produce tools allowing sensitive detection of potential circulating Borrelia antigens and to evaluate them in a mouse model. We focused on two potential early bacterial makers, the highly variable OspC protein and the conserved protein FlaB. High-affinity monoclonal antibodies were produced and used to establish various immunoassays and western blot detection. A very good limit of detection for OspC as low as 17 pg/mL of sample was achieved with SPIE-IA. In infected mice, we were able to measure OspC in plasma with a mean value of 10 ng/mL at 7 days post-inoculation. This result suggests that OspC could be a good blood marker for diagnosis of Lyme borreliosis and that the tools developed during this study could be very useful.
Risk factors and mortality of acute kidney injury within 1 month after lung transplantation
Authors: Kim Nam Eun , Kim Chi Young , Kim Song Yee , Kim Ha Eun , Lee Jin Gu , Paik Hyo Chae , Park Moo Suk 
Published: August 2021

AbstractAfter lung transplantation (LT), some patients are at risk of acute kidney injury (AKI), which is associated with worse outcomes and increased mortality. Previous studies focused on AKI development from 72 h to 1 week within LT, and reported main risk factors for AKI such as intraoperative hypotension, need of ECMO support, ischemia time or longer time on waiting list. However, this period interval rarely reflects medical risk factors probably happen in longer post-operative period. So, in this study we aimed to describe the incidence and risk factor of AKI within post-operative 1 month, which is longer follow up duration. Among 161 patients who underwent LT at Severance hospital in Seoul, Korea from October 2012 to September 2017, 148 patients were retrospectively enrolled. Multivariable logistic regression and Cox proportional hazard models were utilized. Among 148 patients, 59 (39.8%) developed AKI within 1-month after LT. Stage I or II, and stage III AKI were recorded in 26 (17.5%) and 33 (22.2%), respectively. We also classified AKI according to occurrence time, within 1 week as early AKI, from 1 week within 1 month was defined as late AKI. AKI III usually occurred within 7 days after transplantation (early vs. late AKI III, 72.5% vs 21.1%). Risk factor for AKI development was pre-operative anemia, higher units of red blood cells transfused during surgery, colistin intravenous infusion for treating multi drug resistant pathogens were independent risk factors for AKI development. Post-operative bleeding, grade 3 PGD within 72 h, and sepsis were more common complication in the AKI group. Patients with AKI III ([24/33] 72.7%) had significantly higher 1-year mortality than the no-AKI ([18/89] 20.2%), and AKI I or II group ([9/26] 34.6%), log-rank test, P < 0.001). AKI was associated with worse post-operative outcome, 3-month, and 1-year mortality after LT. Severity of AKI was usually determined in early post op period (ex. within 7 days) after LT, so optimal post-operative management as well as recipients selection should be considered.