bluuebunny/crossref_metadata_2025_split huggingface dataset:
RAS specific protease induces irreversible growth arrest via p27 in several KRAS mutant colorectal cancer cell lines
Authors: Stubbs Caleb K. , Biancucci Marco , Vidimar Vania , Satchell Karla J. F. 
Published: September 2021

AbstractRas-specific proteases to degrade RAS within cancer cells are under active development as an innovative strategy to treat tumorigenesis. The naturally occurring biological toxin effector called RAS/RAP1-specific endopeptidase (RRSP) is known to cleave all RAS within a cell, including HRAS, KRAS, NRAS and mutant KRAS G13D. Yet, our understanding of the mechanisms by which RRSP drives growth inhibition are unknown. Here, we demonstrate, using isogenic mouse fibroblasts expressing a single isoform of RAS or mutant KRAS, that RRSP equally inactivates all isoforms of RAS as well as the major oncogenic KRAS mutants. To investigate how RAS processing might lead to varying outcomes in cell fate within cancer cells, we tested RRSP against four colorectal cancer cell lines with a range of cell fates. While cell lines highly susceptible to RRSP (HCT116 and SW1463) undergo apoptosis, RRSP treatment of GP5d and SW620 cells induces G1 cell cycle arrest. In some cell lines, growth effects were dictated by rescued expression of the tumor suppressor protein p27 (Kip1). The ability of RRSP to irreversibly inhibit cancer cell growth highlights the antitumor potential of RRSP, and further warrants investigation as a potential anti-tumor therapeutic.
Association between 9-month isoniazid prophylaxis of latent tuberculosis and severe hepatitis in patients treated with TNF inhibitors
Authors: Lai Edward Chia-Cheng , Liang Hsun-Yin , Huang Ya-Chun , Huang Wei-I. , Chao Pi-Hui , Chen Wen-Wen , Weng Meng-Yu 
Published: September 2021

AbstractTo investigate associations between isoniazid for latent tuberculosis and risk of severe hepatitis, affecting patients with rheumatoid arthritis or ankylosing spondylitis whose treatment includes tumor necrosis factor inhibitors. Our self-controlled case series study analyzed Taiwan’s National Health Insurance Database from 2003 to 2015 to identify RA or AS patients, aged ≥ 20 years, receiving TNF inhibitors and a 9-month single isoniazid treatment. The outcome of interest was hospitalization due to severe hepatitis. We defined risk periods by isoniazid exposure (days): 1–28, 29–56, 57–84, 85–168, 169–252, and 253–280. To compare risk of severe hepatitis in exposed and non-exposed periods, we performed conditional Poisson regressions to generate incidence rate ratios (IRR) and 95% confidence intervals, with adjustment of patients’ baseline covariates including age, sex, HBV, HCV and related medication. Of 54,267 RA patients and 137,889 AS patients identified between 2000 and 2015, 11,221 (20.7%) RA and 4,208 (3.1%) AS patients underwent TNFi therapy, with 722 (5%) receiving isoniazid for latent tuberculosis. We identified 31 incident cases (4.3%) of hospitalization due to severe hepatitis. Of these hospitalization events, 5 occurred in the exposed periods, 25 occurred in the INH unexposed periods, and 1 occurred in the pre-exposure period. Compared with non-exposure, the risk of severe hepatitis was higher in exposed periods (incidence rate ratio [IRR]: 5.1, 95% CI: 1.57–16.55), especially 57–84 days (IRR: 17.29, 95% CI: 3.11–96.25) and 85–168 days (IRR:10.55, 95% CI: 1.90–58.51). The INH related fatal hepatotoxicity was not identified in our study. Our findings suggest an association between risk of severe hepatitis and exposure to isoniazid in patients with RA or AS under TNFi therapy, particularly within the exposed period 57–168 days. A close monitoring of liver function is mandatory to minimize the risk, especially within the first 6 months after initiation of 9 months isoniazid.
Development of a nondiapausing strain of northern corn rootworm with rearing techniques for both diapausing and nondiapausing strains
Authors: Huynh Man P. , Nielson Chad , Wade French B. , Ludwick Dalton C. , Geisert Ryan W. , Pereira Adriano E. , Barry Julie , Meihls Lisa N. , Schneider Sharon K. , Hibbard Bruce E. 
Published: September 2021

AbstractThe northern corn rootworm, Diabrotica barberi Smith & Lawrence, has a univoltine life cycle that typically produces one generation a year. When rearing the northern corn rootworm in the laboratory, in order to break diapause, it is necessary to expose eggs to a five month cold period before raising the temperature. By selective breeding of the small fraction of eggs that hatched without cold within 19–32 days post oviposition, we were able to develop a non-diapausing colony of the northern corn rootworm within five generations of selection. Through selection, the percentages of adult emergence from egg hatch without exposure to cold treatment significantly increased from 0.52% ± 0.07 at generation zero to 29.0% ± 2.47 at generation eight. During this process, we developed an improved method for laboratory rearing of both the newly developed non-diapausing strain as well as the diapausing strain. The development of the non-diapausing colony along with the improvements to the rearing system will allow researchers to produce up to six generations of the northern corn rootworm per year, which would facilitate research and advance our knowledge of this pest at an accelerated rate.
Predictors of attrition among adults in a rural HIV clinic in southern Mozambique: 18-year retrospective study
Authors: Nacarapa Edy , Verdu M. Elisa , Nacarapa Joana , Macuacua Artur , Chongo Bartolomeu , Osorio Dulce , Munyangaju Isabelle , Mugabe Didier , Paredes Roger , Chamarro Ana , Revollo Boris , Alexandre Silvio S. , Simango Mulassua , Torrus Diego , Ramos-Rincon Jose-Manuel 
Published: September 2021

AbstractHIV remains a major cause of morbidity and mortality for people living in many low-income countries. With an HIV prevalence of 12.4% among people aged over 15 years, Mozambique was ranked in 2019 as one of eight countries with the highest HIV rates in the world. We analyzed routinely collected data from electronical medical records in HIV-infected patients aged 15 years or older and enrolled at Carmelo Hospital of Chokwe in Chokwe from 2002 to 2019. Attrition was defined as individuals who were either reported dead or lost to follow-up (LTFU) (≥ 90 days since the last clinic visit with missed medical pick-up after 3 days of failed calls). Kaplan–Meier survival curves and Cox regression analyses were used to model the incidence and predictors of time to attrition. From January 2002 to December 2019, 16,321 patients were enrolled on antiretroviral therapy (ART): 59.2% were women, and 37.9% were aged 25–34 years old. At the time of the analysis, 7279 (44.6%) were active and on ART. Overall, the 16,321 adults on ART contributed a total of 72,987 person-years of observation. The overall attrition rate was 9.46 per 100 person-years. Cox regression showed a higher risk of attrition in those following an inpatient regimen (hazard ratio [HR] 3.18, 95% confidence interval [CI] 2.89–3.50; p < 0.001), having CD4 counts under 50 cells/µL (HR 1.91, 95% CI 1.63–2.24, p < 0.001), receiving anti-TB treatment within 90 days of ART initiation (HR 6.53, 95% CI 5.72–7.45; p < 0.001), classified as WHO clinical stage III (HR 3.75, 95% CI 3.21–4.37; p < 0.001), and having Kaposi’s sarcoma (HR 1.99, 95% CI 1.65–2.39, p < 0.001). Kaplan–Meier analysis showed that patients with CD4 counts of less than 50 cells/µL on ART initiation had a 40% lower chance of survival at 18 years. Low CD4 cell counts, ART initiation as an inpatient, WHO clinical stage III, and anti-tuberculosis treatment within 90 days of ART initiation were strongly associated with attrition. Strengthening HIV testing and ART treatment, improving the diagnosis of tuberculosis before ART initiation, and guaranteed psychosocial support systems are the best tools to reduce patient attrition after starting ART.
Hepatic transcriptome analysis reveals altered lipid metabolism and consequent health indices in chicken supplemented with dietary Bifidobacterium bifidum and mannan-oligosaccharides
Authors: Dev Kapil , Begum Jubeda , Biswas Avishek , Mir Nasir Akbar , Singh Jitendra , Prakash Ravi , Sonowal Joyshikh , Bharali Krishna , Tomar Simmi , Kant Rajiv , Ahlawat Neeraj 
Published: September 2021

AbstractThis study investigated the role of dietary prebiotic mannan-oligosaccharides (MOS), and probioticBifidobacterium bifidum(BFD) in lipid metabolism, deposition, and consequent health indices in broiler chicken. The supplementation of 0.2% MOS along with either 106or 107 CFU BFD/g feed resulted in downregulation of Acetyl-CoA carboxylase, fatty acid synthase, sterolregulatory element binding protein-1, and apolipoprotein B100; and up-regulation of peroxisome proliferator activated receptor-α AMP-activated protein kinase α-1, and stearoyl CoA (∆9) desaturase-1 hepatic expression in broiler chicken. The birds supplemented with 0.2% MOS along with either 106or 107 CFU BFD/g feed depicted lower body fat percentage, palmitic acid, stearic acid, and saturated fatty acid contents, whereas, higher palmitoleic acid, oleic acid, and MUFA contents were observed. The ∆9-desaturase indices of chicken meat have shown higher values; and elongase index (only thigh) and thioesterase index have shown lower values in birds supplemented with 0.2% MOS along with either 106or 107 CFU BFD/g feed. The meat health indices such as Polyunsaturated fatty acids (PUFA)/Saturated fatty acids (SFA) ratio, Mono-saturated fatty acids (MUFA)/SFA ratio, unsaturated fatty acids (UFA)/SFA ratio, hypocholesterolemic/hypercholesterolemic fatty acid ratio, saturation index, atherogenic index, thrombogenic index, and hypercholesterolemic fatty acid content were positively improved in birds supplemented with 0.2% MOS along with either 106or 107 CFU BFD/g feed. Similarly, the birds supplemented with 0.2% MOS along with either 106or 107 CFU BFD/g feed have shown lower serum triglyceride and total cholesterol levels along with higher high density levels and improved serum health indices cardiac risk ratio, atherogenic coefficient, and, atherogenic index of plasma.
Study of PLSR-BP model for stability assessment of loess slope based on particle swarm optimization
Authors: Gong Bin 
Published: September 2021

AbstractThe assessment of loess slope stability is a highly complex nonlinear problem. There are many factors that influence the stability of loess slopes. Some of them have the characteristic of uncertainty. Meanwhile, the relationship between different factors may be complicated. The existence of multiple correlation will affect the objectivity of stability analysis and prevent the model from making correct judgments. In this paper, the main factors affecting the stability of loess slopes are analyzed by means of the partial least-squares regression (PLSR). After that, two new synthesis variables with better interpretation to the dependent variables are extracted. By this way, the multicollinearity among variables is overcome preferably. Moreover, the BP neural network is further used to determine the nonlinear relationship between the new components and the slope safety factor. Then, a new improved BP model based on the partial least-squares regression, which is initialized by the particle swarm optimization (PSO) algorithm, is developed, i.e., the PLSR-BP model. The network with global convergence capability is simplified and more efficient. The test results of the model show satisfactory precision, which indicates that the model is feasible and effective for stability evaluation of loess slopes.
Diagnostic classification of coronavirus disease 2019 (COVID-19) and other pneumonias using radiomics features in CT chest images
Authors: Yang Ning , Liu Faming , Li Chunlong , Xiao Wenqing , Xie Shuangcong , Yuan Shuyi , Zuo Wei , Ma Xiaofen , Jiang Guihua 
Published: September 2021

AbstractWe propose a classification method using the radiomics features of CT chest images to identify patients with coronavirus disease 2019 (COVID-19) and other pneumonias. The chest CT images of two groups of participants (90 COVID-19 patients who were confirmed as positive by nucleic acid test of RT-PCR and 90 other pneumonias patients) were collected, and the two groups of data were manually drawn to outline the region of interest (ROI) of pneumonias. The radiomics method was used to extract textural features and histogram features of the ROI and obtain a radiomics features vector from each sample. Then, we divided the data into two independent radiomic cohorts for training (70 COVID-19 patients and 70 other pneumonias patients), and validation (20 COVID-19 patients and 20 other pneumonias patients) by using support vector machine (SVM). This model used 20 rounds of tenfold cross-validation for training. Finally, single-shot testing of the final model was performed on the independent validation cohort. In the COVID-19 patients, correlation analysis (multiple comparison correction—Bonferroni correction, P < 0.05/7) was also conducted to determine whether the textural and histogram features were correlated with the laboratory test index of blood, i.e., blood oxygen, white blood cell, lymphocytes, neutrophils, C-reactive protein, hypersensitive C-reactive protein, and erythrocyte sedimentation rate. The final model showed good discrimination on the independent validation cohort, with an accuracy of 89.83%, sensitivity of 94.22%, specificity of 85.44%, and AUC of 0.940. This proved that the radiomics features were highly distinguishable, and this SVM model can effectively identify and diagnose patients with COVID-19 and other pneumonias. The correlation analysis results showed that some textural features were positively correlated with WBC, and NE, and also negatively related to SPO2H and NE. Our results showed that radiomic features can classify COVID-19 patients and other pneumonias patients. The SVM model can achieve an excellent diagnosis of COVID-19.
A comparative study on hypofractionated whole-breast irradiation with sequential or simultaneous integrated boost on different positions after breast-conserving surgery
Authors: Yu Ting , Li Yankang , Sun Tao , Xu Min , Wang Wei , Shao Qian , Zhang Yingjie , Li Jianbin , Yu Jinming 
Published: September 2021

AbstractThis study explored the dosimetric difference between hypofractionated whole-breast irradiation (HFWBI) with sequential boost (SEB) and simultaneous integrated boost (SIB) based on supine and prone positions to identify the superior boost mode and superior position. Thirty breast cancer patients eligible for HFWBI after breast-conserving surgery were enrolled. All patients underwent 3DCT simulation scanning in both supine and prone positions. For the SEB-HFWBI plan, the dose prescribed for the planning target volume (PTV) of whole breast (WB) was 2.67 Gy per fraction with a total of 15 fractions, followed by a sequential boost of 3.2 Gy per fraction to the PTV of tumor bed (TB) in 3 fractions. For the SIB-HFWBI plan, the dose prescribed for the PTV of WB was 2.67 Gy per fraction with a total of 15 fractions, with a simultaneously integrated boost of 3.2 Gy per fraction to the PTV of TB with a total of 15 fractions. Regardless of the position, for the PTV of TB, the conformal index (CI) in the SIB-HFWBI plans was greater than those in the SEB-HFWBI plans (T = − 8.114, − 8.114; both P < 0.05). The CI for the PTV of WB increased significantly in the prone position relative to the supine position in both two plans(Z = − 3.340, − 3.501; all P < 0.05). The study suggested that prone SIB-HFWBI might be more suitable for postoperative radiotherapy after breast-conserving surgery for early-stage breast cancer patients.
Study on polyethylene-based carbon fibers obtained by sulfonation under hydrostatic pressure
Authors: Eun Jong Hyun , Lee Joon Seok 
Published: September 2021

AbstractPolyethylene based carbon fibers were studied using high density polyethylene(HDPE) fibers and linear low density polyethylene(LLDPE) fibers with various melt flow index. The draw ratio of the polyethylene fibers and the sulfonation mechanism were investigated under hydrostatic pressures of 1 and 5 bar in the first time. The influence of the melt flow index of polyethylene and types of polyethylene fibers on the sulfonation reaction was studied. Carbon fibers were prepared through the sulfonation of LLDPE fibers possessing side chains with a high melt flow index. The polyethylene fibers, which exhibited thermoplastic properties and plastic behavior, were cross-linked through the sulfonation process. Their thermal properties and mechanical properties changed to thermoset properties and elastic behavior. Although sulfonation was performed under a hydrostatic pressure of 5 bar, it was difficult to convert the highly oriented polyethylene fibers because of their high crystallinity, but partially oriented polyethylene fibers could be converted to carbon fibers. Therefore, the effect of fiber orientation on fiber crosslinking, which has not been reported in previous literature, has been studied in detail, and a new method of hydrostatic pressure sulfonation has been successful in thermally stabilizing polyethylene fiber. Hydrostatic sulfonation was performed using partially oriented LLDPE fibers with a melt flow index of 20 at 130 °C for 2.5 h under a hydrostatic pressure of 5 bar. The resulting fibers were carbonized under the following conditions: 1000 °C, 5 °C/min, and five minutes. Carbon fibers with a tensile strength of 2.03 GPa, a tensile modulus of 143.63 GPa, and an elongation at break of 1.42% were prepared.
The carbon components in indoor and outdoor PM2.5 in winter of Tianjin
Authors: Wang Baoqing , Li Yinuo , Tang Zhenzhen , Cai Ningning 
Published: September 2021

AbstractTo study the carbon components in indoor and outdoor PM2.5, the samples of PM2.5 were collected from Nankai University in December 2015. The contents of eight carbon components were analyzed to use the thermo-optical reflection method. The results indicated that organic carbon (OC) mass concentration was 17.01, 19.48 and 18.92 µg/m3 in outdoor, dormitory and laboratory; elemental carbon (EC) mass concentration was 7.97, 3.56 and 3.53 µg/m3 in outdoor, dormitory and laboratory; and the total carbon aerosol was the proportion of more than 23% of PM2.5 samples. Lower wind speed and higher relative humidity were helpful to the accumulation of PM2.5. The ratio of OC/EC was > 2, and the SOC/OC ratio was > 30%, indicating that SOC was a crucial component indoors and outdoors. About 72% and 85% of the outdoor OC entering dormitory and laboratory environment, and about 59% and 71% of the outdoor EC entering dormitory and laboratory environment. Factor analysis of the eight carbon fractions indicated that the sources of OC and EC in outdoor, dormitory and laboratory is different.
Distributions of straw-derived carbon in Mollisol’s aggregates under different fertilization practices
Authors: Ge Zhuang , An Tingting , Bol Roland , Li Shuangyi , Zhu Ping , Peng Chang , Xu Yingde , Cheng Na , Li Tingyu , Wu Yihui , Xie Ninghui , Wang Jingkuan 
Published: September 2021

AbstractStraw incorporation is an effective measure for increasing soil organic carbon (SOC) thereby improving soil quality and crop productivity. However, quantitative assessments of the transformation and distribution of exogenous carbon (C) in soil aggregates under various field fertilization practices have been lacking. In this study, we collected topsoil samples (0–20 cm) from three fertilization treatments (no fertilization control, CK; inorganic fertilizer, IF; inorganic fertilizer plus manure, IFM) at a 29-year long-term Mollisol experiment in Northeast China. We then mixed the soil samples with 13C-labeled maize straw (δ13C = 246.9‰), referred as CKS, IFS, and IFMS, and incubated them in-situ for 360 days. Initial and incubated soil samples were separated into four aggregate fractions (> 2, 1–2, 0.25–1, and < 0.25 mm) using the dry-sieving method, which counted 18%, 17%, 45%, and 21% (averages from the three initial soil samples), respectively. Organic C content was highest in 0.25–1 mm aggregate (6.9–9.6 g kg−1) prior to incubation, followed by > 2 mm aggregates (2.2–5.8 g kg−1), 1–2 mm aggregates (2.4–4.6 g kg−1), and < 0.25 mm aggregates (3.3–4.5 g kg−1). After 360-day incubation with straw incorporation, organic C content was 2.3–4.5 g kg−1, 2.9–5.0 g kg−1, 7.2–11 g kg−1 and 1.8–3.0 g kg−1 in > 2, 1–2, 0.25–1, and < 0.25 mm aggregates, respectively, with the highest in the IFMS treatment. Straw-derived C content was 0.02–0.05 g kg−1, 0.03–0.04 g kg−1, 0.11–0.13 g kg−1, and 0.05–0.10 g kg−1 in > 2, 1–2, 0.25–1, and < 0.25 mm aggregates, respectively. The relative distribution of straw-derived C was highest (40–49%) in 0.25–1 mm aggregate, followed by < 0.25 mm aggregates (21–31%), 1–2 mm aggregates (13–15%), and > 2 mm aggregates (9.4–16%). During the incubation, the relative distribution of straw-derived C exhibited a decrease in > 2 mm and 1–2 mm aggregates, but an increase in the < 0.25 mm aggregate. At the end of incubation, the relative distribution of straw-derived C showed a decrease in the 0.25–1 mm aggregate but an increase in the < 0.25 mm aggregate under the IFMS treatment. This study indicates that more straw-derived C would be accumulated in smaller aggregates over longer period in Mollisols, and combined inorganic and organic fertilization is an effective measure for C sequestration in Northeast China.
Development and validation of a novel HILIC method for the quantification of low-levels of cuprizone in cuprizone-containing chow
Authors: Zheng Fengmei , Lin Yiqing , Boulas Pierre 
Published: September 2021

AbstractCuprizone is an amide compound that has been wildly used in various animal studies, such as in the investigation of remyelination in mouse model. It is important to control the amount of cuprizone dosed in animals to be consistent as different amounts may lead to different clinical observations. Cuprizone is usually administrated as a minor component (i.e., 0.3%) of a mixture with powdered or pelleted rodent chow. Its low content, combined with the complex nature of chow, represents a significant challenge for the quantification of cuprizone in the mixture. To the best of our knowledge, no method has been reported in the literature so far. In this study, a simple, selective, and sensitive hydrophilic interaction liquid chromatographic method was developed for the quantification of cuprizone in cuprizone pre-clinical formulations. The analytical method comprises a fast ultrasound assisted extraction with acetonitrile/water as a solvent followed by gradient separation using a Waters Xbridge HILIC column with 0.1% TFA in water and acetonitrile as mobile phases and UV detection at 220 nm. The specificity, linearity, accuracy, repeatability, and limit of quantitation (LOQ) of the method were established. The method was determined to be linear in the range of 10–200 μg/mL. Accuracy was assessed by spiking a chow placebo with various amounts of a cuprizone reference standard to achieve target concentration levels and the recoveries were within the acceptance criterion of 90–110% of the target concentrations. Repeatability was demonstrated at the nominal concentration of 100 µg/mL and LOQ level of 2.5 μg/mL. This method has been demonstrated to be suitable for its intended use and has been successfully applied to the quantification of low levels of cuprizone in chow formulations. It was found that the cuprizone content in chow could varied significantly between batches and the potential causes of the variability were investigated.