bluuebunny/crossref_metadata_2025_split huggingface dataset:
The effects of camel chymosin and Withania coagulans extract on camel and bovine milk cheeses
Authors: Mbye Mustapha , Mohamed Huda , Raziq Abdul , Kamal-Eldin Afaf 
Published: June 2021

AbstractWithania coagulans (W. coagulans) extract and camel chymosin have aspartic protease capable of coagulating milk for cheese production. This study investigated the quality of camel and bovine milk cheeses coagulated using Withania extracts, came chymosin, and their mixture in two experiments. In Experiment (1), a factorial design with four factors (W. coagulans, camel chymosin, incubation time, and incubation temperature) was performed. The effect of these factors on cheese’s yield and hardness were assessed. An enzyme concentration corresponding to a 36 µg/L of milk of W. coagulans, 50 IMCU/L of camel chymosin, holding time of 4 h, and incubation temperature of 60 °C provided the optimal textural hardness for both camel and bovine milk cheeses. Seven treatments were analyzed in experiment (2) were analyzed for physicochemical properties, yield, and sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGEitation). The results showed that pure Withania extract exhibited the lower coagulating effect resulting in cheeses with low yield, hardness, fat, protein, and total solids. The SDS-PAGE electropherograms of camel cheese showed several low molecular weight bands as compared to bovine cheese. This phenomenon is due to excessive proteolysis in camel cheese, which we believed is caused by the presence of endogenous enzymes.
Anatomy of an extinction revealed by molecular fossils spanning OAE2
Authors: Forkner R. M. , Dahl J. , Fildani A. , Barbanti S. M. , Yurchenko I. A. , Moldowan J. M. 
Published: June 2021

AbstractThe Cenomanian–Turonian mass extinction (Oceanic Anoxic Event 2-OAE2) was a period of profound ecological change that is recorded in the sedimentary record in many locations around the globe. In this study, we provide a new and detailed account of repetitive changes in water column ecology by analyzing the organic geochemical record preserved within the OAE2 section of the Greenhorn Formation, Western Interior Seaway (WIS) of North America. Results from this study provide evidence that OAE2 in the WIS was the result of the cumulative effect of reoccurring environmental stresses rather than a single massive event. During OAE2, extreme variations in biotic composition occurred erratically over periods of several thousands of years as revealed by molecular fossil (biomarker) abundances and distributions calibrated to sedimentation rates. These cycles of marine productivity decline almost certainly had follow-on effects through the ecosystem and likely contributed to the Cenomanian–Turonian mass extinction. While the causes behind organic productivity cycling are yet unproven, we postulate that they may have been linked to repeated episodes of volcanic activity. Catastrophic volcanism and related CO2 outgassing have been interpreted as main drivers for OAE2, though this study provides new evidence that repetitive, punctuated environmental stresses were also important episodes within the anatomy of OAE2. Following OAE2, these cycles of productivity decline disappeared, and the WIS returned to conditions comparable to pre-OAE2 levels.
Transcriptome analysis insight into ethylene metabolism and pectinase activity of apricot (Prunus armeniaca L.) development and ripening
Authors: Xu Min , Zhou Weiquan , Geng Wenjuan , Zhao Shirong , Pan Yan , Fan Guoquan , Zhang Shikui , Wang Yatong , Liao Kang 
Published: June 2021

AbstractEthylene metabolism is very important for climacteric fruit, and apricots are typical climacteric fruit. The activity of pectinase is closely related to fruit firmness, which further affects fruit quality. To better understand ethylene metabolism, pectinase activity and their molecular regulation mechanisms during the development and ripening of apricot fruit, ethylene metabolism, pectinase activity and the “Luntaibaixing” apricot fruit transcriptome were analyzed at different developmental stages. Ethylene metabolic precursors, enzyme activities and ethylene release increased during fruit development and ripening, with significant differences between the ripening stage and other stages (P < 0.05). Fruit firmness decreased significantly from the S1 to S5 stages, and polygalacturonase, pectin methylesterase, and pectin lyase activities were significantly higher in the S5 stage than in other stages. RNA sequencing (RNA-seq) analysis of fruit resulted in the identification of 22,337 unigenes and 6629 differentially expressed genes (DEGs) during development and ripening, of which 20,989 unigenes are annotated in public protein databases. In functional enrichment analysis, DEGs among the three stages were found to be involved in plant hormone signal transduction. Four key genes affecting ethylene metabolism, six key ethylene signal transduction genes and seven genes related to pectinase in apricot fruit were identified by KEGG pathway analysis. By RNA-sequencing, we not only clarified the molecular mechanism of ethylene metabolism during the ripening of "Luntaibaixing" apricot fruit but also provided a theoretical basis for understanding pectin metabolism in apricot fruit.
Bandgap atomistic calculations on hydrogen-passivated GeSi nanocrystals
Authors: Cojocaru Ovidiu , Lepadatu Ana-Maria , Nemnes George Alexandru , Stoica Toma , Ciurea Magdalena Lidia 
Published: June 2021

AbstractWe present a detailed study regarding the bandgap dependence on diameter and composition of spherical Ge-rich GexSi1−x nanocrystals (NCs). For this, we conducted a series of atomistic density functional theory (DFT) calculations on H-passivated NCs of Ge-rich GeSi random alloys, with Ge atomic concentration varied from 50 to 100% and diameters ranging from 1 to 4 nm. As a result of the dominant confinement effect in the DFT computations, a composition invariance of the line shape of the bandgap diameter dependence was found for the entire computation range, the curves being shifted for different Ge concentrations by ΔE(eV) = 0.651(1 − x). The shape of the dependence of NCs bandgap on the diameter is well described by a power function 4.58/d1.25 for 2–4 nm diameter range, while for smaller diameters, there is a tendency to limit the bandgap to a finite value. By H-passivation of the NC surface, the effect of surface states near the band edges is excluded aiming to accurately determine the NC bandgap. The number of H atoms necessary to fully passivate the spherical GexSi1−x NC surface reaches the total number atoms of the Ge + Si core for smallest NCs and still remains about 25% from total number of atoms for bigger NC diameters of 4 nm. The findings are in line with existing theoretical and experimental published data on pure Ge NCs and allow the evaluation of the GeSi NCs behavior required by desired optical sensor applications for which there is a lack of DFT simulation data in literature.
Evaluation of emotional arousal level and depression severity using voice-derived sound pressure change acceleration
Authors: Shinohara Shuji , Toda Hiroyuki , Nakamura Mitsuteru , Omiya Yasuhiro , Higuchi Masakazu , Takano Takeshi , Saito Taku , Tanichi Masaaki , Boku Shuken , Mitsuyoshi Shunji , So Mirai , Yoshino Aihide , Tokuno Shinichi 
Published: June 2021

AbstractIn this research, we propose a new index of emotional arousal level using sound pressure change acceleration, called the emotional arousal level voice index (EALVI), and investigate the relationship between this index and depression severity. First, EALVI values were calculated from various speech recordings in the interactive emotional dyadic motion capture database, and the correlation with the emotional arousal level of each voice was examined. The resulting correlation coefficient was 0.52 (n = 10,039, p < 2.2 × 10−16). We collected a total of 178 datasets comprising 10 speech phrases and the Hamilton Rating Scale for Depression (HAM-D) score of outpatients with major depression at the Ginza Taimei Clinic (GTC) and the National Defense Medical College (NDMC) Hospital. The correlation coefficients between the EALVI and HAM-D scores were − 0.33 (n = 88, p = 1.8 × 10−3) and − 0.43 (n = 90, p = 2.2 × 10−5) at the GTC and NDMC, respectively. Next, the dataset was divided into “no depression” (HAM-D < 8) and “depression” groups (HAM-D ≥ 8) according to the HAM-D score. The number of patients in the “no depression” and “depression” groups were 10 and 78 in the GTC data, and 65 and 25 in the NDMC data, respectively. There was a significant difference in the mean EALVI values between the two groups in both the GTC and NDMC data (p = 8.9 × 10−3, Cliff’s delta = 0.51 and p = 1.6 × 10−3; Cliff’s delta = 0.43, respectively). The area under the curve of the receiver operating characteristic curve when discriminating both groups by EALVI was 0.76 in GTC data and 0.72 in NDMC data. Indirectly, the data suggest that there is some relationship between emotional arousal level and depression severity.
Mechanical strength and hydrostatic testing of VIVO adhesive in sutureless microsurgical anastomoses: an ex vivo study
Authors: Heitzer Marius , Brockhaus Julia , Kniha Kristian , Merkord Felix , Peters Florian , Hölzle Frank , Goloborodko Evgeny , Modabber Ali 
Published: June 2021

AbstractConventional anastomoses with interrupted sutures are challenging and inevitably associated with trauma to the vessel walls. The goal of this study was to evaluate a novel alternative adhesive-based suture-free anastomosis technique that uses an intraluminal stent. Overall, 120 porcine coronary vessels were analyzed in an ex vivo model and were examined for their mechanical (n = 20 per cohort) and hydrostatic strength (n = 20 per cohort). Anastomoses were made using the novel VIVO adhesive with an additional intraluminal nitinol stent and was compared to interrupted suture anastomosis and to native vessels. Sutureless anastomoses withstood pressures 299 ± 4.47 [mmHg] comparable to native vessels. They were performed significantly faster 553.8 ± 82.44 [sec] (p ≤ 0.001) and withstood significantly higher pressures (p ≤ 0.001) than sutured anastomoses. We demonstrate that the adhesive-based anastomosis can also resist unphysiologically high longitudinal tensile forces with a mean of 1.33 [N]. Within the limitations of an in vitro study adhesive-based suture-free anastomosis technique has the biomechanical potential to offer a seamless alternative to sutured anastomosis because of its stability, and faster handling. In vivo animal studies are needed to validate outcomes and confirm safety.
Superfluid density and collective modes of fermion superfluid in dice lattice
Authors: Wu Yu-Rong , Zhang Xiao-Fei , Liu Chao-Fei , Liu Wu-Ming , Zhang Yi-Cai 
Published: June 2021

AbstractThe superfluid properties of attractive Hubbard model in dice lattice are investigated. It is found that three superfluid order parameters increase as the interaction increases. When the filling factor falls into the flat band, due to the infinite large density of states, the resultant superfluid order parameters are proportional to interaction strength, which is in striking contrast with the exponentially small counterparts in usual superfluid (or superconductor). When the interaction is weak, and the filling factor is near the bottom of the lowest band (or the top of highest band), the superfluid density is determined by the effective mass of the lowest (or highest) single-particle band. When the interaction is strong and filling factor is small, the superfluid density is inversely proportional to interaction strength, which is related to effective mass of tightly bound pairs. In the strong interaction limit and finite filling, the asymptotic behaviors of superfluid density can be captured by a parabolic function of filling factor. Furthermore, when the filling is in flat band, the superfluid density shows a logarithmic singularity as the interaction approaches zero. In addition, there exist three undamped collective modes for strong interactions. The lowest excitation is gapless phonon, which is characterized by the total density oscillations. The two others are gapped Leggett modes, which correspond relative density fluctuations between sublattices. The collective modes are also reflected in the two-particle spectral functions by sharp peaks. Furthermore, it is found that the two-particle spectral functions satisfy an exact sum-rule, which is directly related to the filling factor (or density of particle). The sum-rule of the spectral functions may be useful to distinguish between the hole-doped and particle-doped superfluid (superconductor) in experiments.
Throttling process of a supersonic cascade studied by high-frequency response pressure and high-speed schlieren
Authors: Wang Ziao , Chang Juntao , Hou Wenxin , Yu Daren 
Published: June 2021

AbstractIn this study, a single-channel supersonic cascade model is investigated experimentally at a freestream Mach number of 2.4 to obtain a better understanding of the flow field evolution during the throttling process. A flap is placed at the channel exit to choke the flow linearly. Measurements include 1-kHz schlieren imaging and 10-kHz simultaneous fast-response wall pressure. Three stages, namely attached flow, separated flow, and oscillatory flow, are identified in the throttling process. The joint time–frequency analysis and wall pressure spectrum contour exhibit the time evolution and spatial distribution of the pressure fluctuation. With the increase in backpressure, the pressure fluctuation in the low-frequency shock oscillation range of 40–400 Hz on the suction surface located in the separated flow gradually enhances. The power spectral, coherence, and phase analyses of the schlieren images describe the dominant oscillation structure and its relationship with other regions. During the separated flow, the pressure change in the subsonic separated region first lead to a change in the state of the separated shear layer, after which the shock waves in the shock train, move. The oscillatory flow is a process wherein the upstream shock wave oscillates, causing the entire downstream channel to fluctuate.
The investigation of the volatile metabolites of lung cancer from the microenvironment of malignant pleural effusion
Authors: Chen Ke-Cheng , Tsai Shih-Wei , Zhang Xiang , Zeng Chian , Yang Hsiao-Yu 
Published: June 2021

AbstractFor malignant pleural effusions, pleural fluid cytology is a diagnostic method, but sensitivity is low. The pleural fluid contains metabolites directly released from cancer cells. The objective of this study was to diagnose lung cancer with malignant pleural effusion using the volatilomic profiling method. We recruited lung cancer patients with malignant pleural effusion and patients with nonmalignant diseases with pleural effusion as controls. We analyzed the headspace air of the pleural effusion by gas chromatography-mass spectrometry. We used partial least squares discriminant analysis (PLS-DA) to identify metabolites and the support vector machine (SVM) to establish the prediction model. We split data into a training set (80%) and a testing set (20%) to validate the accuracy. A total of 68 subjects were included in the final analysis. The PLS-DA showed high discrimination with an R2 of 0.95 and Q2 of 0.58. The accuracy of the SVM in the test set was 0.93 (95% CI 0.66, 0.998), the sensitivity was 83%, the specificity was 100%, and kappa was 0.85, and the area under the receiver operating characteristic curve was 0.96 (95% CI 0.86, 1.00). Volatile metabolites of pleural effusion might be used in patients with cytology-negative pleural effusion to rule out malignancy.
Evaluation of different grafting materials for alveolar cleft repair in the context of orthodontic tooth movement in rats
Authors: Möhlhenrich Stephan Christian , Kniha Kristian , Magnuska Zuzanna , Hermanns-Sachweh Benita , Gremse Felix , Hölzle Frank , Danesh Gholamreza , Modabber Ali 
Published: June 2021

AbstractTo minimize the postoperative risks posed by grafting autologous transplants for cleft repair, efforts are being made to improve grafting materials for use as potential alternatives. The aim of this study was to compare the bone graft quality of different bone substitutes including the gold standard autografts during the healing processes after cleft repair in the context of orthodontic treatment. In 21 Wistar rats, a complete, continuity-interrupting cleft was created. After 4 weeks, cleft repair was performed using autografts from the hips’ ischial tuberosity, human xenografts, or synthetic bone substitutes [beta-tricalcium phosphate (β-TCP)/hydroxyapatite (HA)]. After another 4 weeks, the first molar movement was initiated in the reconstructed jaw for 8 weeks. The bone remodeling was analyzed in vivo using micro-computed tomography (bone mineral density and bone volume fraction) and histology (new bone formation). All the grafting materials were statistically different in bone morphology, which changed during the treatment period. The β-TCP/HA substitute demonstrated less resorption compared to the autologous and xenogeneic/human bone, and the autografts led to a stronger reaction in the surrounding bone. Histologically, the highest level of new bone formation was found in the human xenografts, and the lowest was found in the β-TCP/HA substitute. The differences between the two bone groups and the synthetic materials were statistically significant. Autografts were confirmed to be the gold standard in cleft repair with regard to graft integration. However, parts of the human xenograft seemed comparable to the autografts. Thus, this substitute could perhaps be used as an alternative after additional tissue-engineered modification.
Linear and nonlinear investigations for the adsorption of paracetamol and metformin from water on acid-treated clay
Authors: Elamin Mohamed R. , Abdulkhair Babiker Y. , Algethami Faisal K. , Khezami L. 
Published: June 2021

AbstractNatural clays are considered a safe, low-cost, and sound sorbent for some pharmaceutical and body care products from water. Metformin (MF) and paracetamol (PA) are of the most consumable drugs worldwide. A portion of natural clay was treated with distilled water, and another part was treated with hydrochloric acid. The water-treated clay (WTC) and the acid-treated clay (ATC) were characterized by scanning electron microscopy-energy dispersive spectroscopy, X-ray diffraction, Fourier transforms infrared spectroscopy, and nitrogen adsorption isotherm. Batch experiments were employed to investigate the influence of contact time and solution parameters on the adsorption of PA and MF on WTC and ATC. 30 min attained the equilibrium for all sorbent-sorbate systems. Both sorbents fitted the pseudo-second-order kinetic model with a preference to the nonlinear fitting, and the mechanism of adsorption partially fitted the liquid-film diffusion model. The PA and MF adsorption on WTC and ATC fitted the Freundlich model in preference to nonlinear fitting. The adsorption of pollutants on both sorbents was spontaneous, exothermic, and physisorption in nature. Even at low concentrations, both WTC and ATC showed efficiency above 80% in removing PA and MF from tab water, groundwater, and Red seawater. These findings nominated natural clay as an alternative to the costly nanomaterials as sorbents for removing pharmaceutical contaminants from water.
Complete plastomes of six species of Wikstroemia (Thymelaeaceae) reveal paraphyly with the monotypic genus Stellera
Authors: He Liefen , Zhang Yonghong , Lee Shiou Yih 
Published: June 2021

AbstractWikstroemia (Thymelaeaceae) is a diverse genus that extends from Asia to Australia and has been recorded on the Hawaiian Islands. Despite its medicinal properties and resource utilization in pulp production, genetic studies of the species in this important genus have been neglected. In this study, the plastome sequences of six species of Wikstroemia were sequenced and analysed. The plastomes ranged in size between 172,610 bp (W. micrantha) and 173,697 bp (W. alternifolia) and exhibited a typical genome structure consisting of a pair of inverted repeat (IR) regions separated by a large single-copy (LSC) region and a small single-copy (SSC) region. The six plastomes were similar in the 138 or 139 genes predicted, which consisted of 92 or 93 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC contents were identical (36.7%). Comparative genomic analyses were conducted with the inclusion of two additional published species of Wikstroemia in which the sequence divergence and expansion of IRs in the plastomes were determined. When compared to the coding sequences (CDSs) of Aquilaria sinensis, five genes, namely, rpl2, rps7, rps18, ycf1 and ycf2, indicated positive selection in W. capitata. The plastome-based phylogenetic analysis inferred that Wikstroemia in its current state is paraphyletic to Stellera chamaejasme, while the ITS-based tree analyses could not properly resolve the phylogenetic relationship between Stellera and Wikstroemia. This finding rekindled interest in the proposal to synonymize Stellera with Wikstroemia, which was previously proposed but rejected due to taxonomic conflicts. Nevertheless, this study provides valuable genomic information to aid in the taxonomic implications and phylogenomic reconstruction of Thymelaeaceae.
Extended JAZ degron sequence for plant hormone binding in jasmonate co-receptor of tomato SlCOI1-SlJAZ
Authors: Saito Rina , Hayashi Kengo , Nomoto Haruna , Nakayama Misuzu , Takaoka Yousuke , Saito Hiroaki , Yamagami Souhei , Muto Toshiya , Ueda Minoru 
Published: June 2021

Abstract(+)-7-iso-Jasmonoyl-l-isoleucine (JA-Ile) is a lipid-derived phytohormone implicated in plant development, reproduction, and defense in response to pathogens and herbivorous insects. All these effects are instigated by the perception of JA-Ile by the COI1-JAZ co-receptor in the plant body, which in Arabidopsis thaliana is profoundly influenced by the short JAZ degron sequence (V/L)P(Q/I)AR(R/K) of the JAZ protein. Here, we report that SlJAZ-SlCOI1, the COI1-JAZ co-receptor found in the tomato plant, relies on the extended JAZ degron sequence (V/L)P(Q/I)AR(R/K)XSLX instead of the canonical JAZ degron. This finding illuminates our understanding of the mechanism of ligand perception by JA-Ile in this plant, and will inform both efforts to improve it by genetic modification of the SlCOI1-SlJAZ co-receptor, and the development of the synthetic agonists/antagonists.
Biophysical properties of a tau seed
Authors: Hou Zhiqiang , Chen Dailu , Ryder Bryan D. , Joachimiak Lukasz A. 
Published: June 2021

AbstractPathogenesis of tauopathies involves conversion of tau monomer into pathological tau conformers that serve as templates to recruit native tau into growing assemblies. Small soluble tau seeds have been proposed to drive pathological tau assembly in vitro, in cells and in vivo. We have previously described the isolation of monomeric pathogenic tau seeds derived from recombinant samples and tauopathy tissues but in-depth biophysical characterization of these species has not been done. Here we describe a chromatographic method to isolate recombinant soluble tau seeds derived from heparin treatment. We used biochemical and biophysical approaches to show that the seeds are predominantly monomeric and have the capacity to nucleate aggregation of inert forms of tau in vitro and in cells. Finally, we used crosslinking mass spectrometry to identify the topological changes in tau as it converts from an inert state to a pathogenic seed. Future studies will reveal the relationship between soluble seeds and structural polymorphs derived from tauopathies to help diagnose and develop therapeutics targeting specific tauopathies.