bluuebunny/crossref_metadata_2025_split huggingface dataset:
Bacterial metabolites trimethylamine N-oxide and butyrate as surrogates of small intestinal bacterial overgrowth in patients with a recent decompensated heart failure
Authors: Mollar Anna , Marrachelli Vannina G. , Núñez Eduardo , Monleon Daniel , Bodí Vicent , Sanchis Juan , Navarro David , Núñez Julio 
Published: March 2021

AbstractIn patients with heart failure (HF), the exhaled concentrations of hydrogen after a breath test—a non-invasive assessment of small intestinal overgrowth- has been related to HF severity and higher risk of adverse outcomes. Indeed, two intestinal bacterial metabolites—blood Trimethylamine N-Oxide (TMAO) and butyrate—have been related to a worse prognosis in HF. However, the relationship between the exhaled concentrations of hydrogen after a breath test and these two metabolites remains unknown. Thus, in this post-hoc analysis, we sought to evaluate whether these two metabolites are associated with the exhaled concentrations of hydrogen after a breath test in patients with a recent admission for HF. We included 60 patients with a recent hospitalization for HF. Cumulative hydrogen over time was integrated into a single measurement by the area under the concentration curve (AUC-H2). A linear regression multivariable analysis was used to evaluate the associations. A 2-sided p-value < 0.05 was considered to be statistically significant. The median (p25–p75) amino-terminal pro-brain natriuretic peptide, AUC-H2, TMAO, and Butyrate were 4789 pg/ml (1956–11149), 1615 (700–2585), 0.68 (0.42–1.12), and 0.22 ± 13, respectively. After multivariate adjustment, TMAO and butyrate were significantly associated with AUC-H2 (p = 0.027 and p = 0.009, respectively). For TMAO, this association was positive and for butyrate, negative. Bacterial-origin metabolites TMAO and Butyrate were independently related to AUC-H2 in patients with a recent hospitalization for acute HF.
Normal weight obesity and the risk of diabetes in Chinese people: a 9-year population-based cohort study
Authors: Xu Shaoyong , Ming Jie , Jia Aihua , Yu Xinwen , Cai Jing , Jing Ce , Liu Chun , Ji Qiuhe 
Published: March 2021

AbstractWe evaluated the risk of developing diabetes in Chinese individuals with normal weight obesity (NWO). This 9-year population-based cohort study was based on the China National Diabetes and Metabolic Disorders Survey. A total of 1128 subjects without diabetes were included. Body fat percentage (BF%) was assessed by electrical bioimpedance. NWO was defined as subjects with a normal BMI (< 24 kg/m2) and an excess BF% (≥ 24% in men; ≥ 33% in women). Of 1128 individuals, 528 individuals were normal weight non-obese (NWNO), 118 (10.5%) were normal weight obese (NWO), 63 were overweight non-obese (OWNO), and 419 were overweight obese (OWO). During a follow-up of 9.0 years (interquartile range: 8.9–9.3), 113 (10.0%) individuals developed diabetes. The incidence rates of diabetes in NWNO, NWO, OWNO and OWO people were 5.69 (27 cases), 11.30 (12 cases), 3.53 (2 cases) and 19.09 (72 cases) per 1000 person-years, respectively. Cox regression analyses indicated multivariate-adjusted hazard ratios of diabetes in NWO, OWNO and OWO people were 2.110 (95% CI 1.026–4.337, p = 0.025), 0.441 (95% CI 0.101–1.928, p = 0.232) and 3.465 (95% CI 2.163–5.551, p < 0.001), respectively, relative to NWNO people. Chinese people with NWO are at increased risk of developing diabetes. We strongly suggest the incorporation of BF% measurement into the regular physical examination in Chinese medical practice.
Composition of receptor tyrosine kinase-mediated lipid micro-domains controlled by adaptor protein interaction
Authors: Rohwedder Arndt , Knipp Sabine , Roberts Lee D. , Ladbury John E. 
Published: March 2021

AbstractReceptor tyrosine kinases (RTKs) are highly regulated, single pass transmembrane proteins, fundamental to cellular function and survival. Aberrancies in regulation lead to corruption of signal transduction and a range of pathological outcomes. Although control mechanisms associated with the receptors and their ligands are well understood, little is known with respect to the impact of lipid/lipid and lipid/protein interactions in the proximal plasma membrane environment. Given that the transmembrane regions of RTKs change in response to extracellular ligand binding, the lipid interactions have important consequences in influencing signal transduction. Fibroblast growth factor receptor 2 (FGFR2) is a highly regulated RTK, including under basal conditions. Binding of the adaptor protein, growth factor receptor-bound protein 2 (GRB2) to FGFR2 prevents full activation and recruitment of downstream signalling effector proteins in the absence of extracellular stimulation. Here we demonstrate that the FGFR2-GRB2 complex is sustained in a defined lipid environment. Dissociation of GRB2 from this complex due to ligand binding, or reduced GRB2 expression, facilitates the dispersion of FGFR2 into detergent-resistant membrane (DRM) micro-domains. This modification of the plasma membrane proximal to FGFR2 provides a further regulatory checkpoint which controls receptor degradation, recycling and recruitment of intracellular signalling proteins.
Genomic signatures of drift and selection driven by predation and human pressure in an insular lizard
Authors: Bassitta Marta , Brown Richard P. , Pérez-Cembranos Ana , Pérez-Mellado Valentín , Castro José A. , Picornell Antònia , Ramon Cori 
Published: March 2021

AbstractGenomic divergence was studied in 10 small insular populations of the endangered Balearic Islands lizard (Podarcis lilfordi) using double digest restriction-site associated DNA sequencing. The objectives were to establish levels of divergence among populations, investigate the impact of population size on genetic variability and to evaluate the role of different environmental factors on local adaptation. Analyses of 72,846 SNPs supported a highly differentiated genetic structure, being the populations with the lowest population size (Porros, Foradada and Esclatasang islets) the most divergent, indicative of greater genetic drift. Outlier tests identified ~ 2% of loci as candidates for selection. Genomic divergence-Enviroment Association analyses were performed using redundancy analyses based on SNPs putatively under selection, detecting predation and human pressure as the environmental variables with the greatest explanatory power. Geographical distributions of populations and environmental factors appear to be fundamental drivers of divergence. These results support the combined role of genetic drift and divergent selection in shaping the genetic structure of these endemic island lizard populations.
New thermodynamic activity-based approach allows predicting the feasibility of glycolysis
Authors: Greinert Thorsten , Vogel Kristina , Maskow Thomas , Held Christoph 
Published: March 2021

AbstractThermodynamic feasibility analyses help evaluating the feasibility of metabolic pathways. This is an important information used to develop new biotechnological processes and to understand metabolic processes in cells. However, literature standard data are uncertain for most biochemical reactions yielding wrong statements concerning their feasibility. In this article we present activity-based equilibrium constants for all the ten glycolytic reactions, accompanied by the standard reaction data (standard Gibbs energy of reaction and standard enthalpy of reaction). We further developed a thermodynamic activity-based approach that allows to correctly determine the feasibility of glycolysis under different chosen conditions. The results show for the first time that the feasibility of glycolysis can be explained by thermodynamics only if (1) correct standard data are used and if (2) the conditions in the cell at non-equilibrium states are accounted for in the analyses. The results here will help to determine the feasibility of other metabolisms and to understand metabolic processes in cells in the future.
Detecting the effects of predator-induced stress on the global metabolism of an ungulate prey using fecal metabolomic fingerprinting
Authors: Valerio Azzurra , Borrego C. Steven , Boitani Luigi , Casadei Luca , Giuliani Alessandro , Wielgus Robert B. , Simek Stephanie L. , Valerio Mariacristina 
Published: March 2021

AbstractFew field tests have assessed the effects of predator-induced stress on prey fitness, particularly in large carnivore-ungulate systems. Because traditional measures of stress present limitations when applied to free-ranging animals, new strategies and systemic methodologies are needed. Recent studies have shown that stress and anxiety related behaviors can influence the metabolic activity of the gut microbiome in mammal hosts, and these metabolic alterations may aid in identification of stress. In this study, we used NMR-based fecal metabolomic fingerprinting to compare the fecal metabolome, a functional readout of the gut microbiome, of cattle herds grazing in low vs. high wolf-impacted areas within three wolf pack territories. Additionally, we evaluated if other factors (e.g., cattle nutritional state, climate, landscape) besides wolf presence were related to the variation in cattle metabolism. By collecting longitudinal fecal samples from GPS-collared cattle, we found relevant metabolic differences between cattle herds in areas where the probability of wolf pack interaction was higher. Moreover, cattle distance to GPS-collared wolves was the factor most correlated with this difference in cattle metabolism, potentially reflecting the variation in wolf predation risk. We further validated our results through a regression model that reconstructed cattle distances to GPS-collared wolves based on the metabolic difference between cattle herds. Although further research is needed to explore if similar patterns also hold at a finer scale, our results suggests that fecal metabolomic fingerprinting is a promising tool for assessing the physiological responses of prey to predation risk. This novel approach will help improve our knowledge of the consequences of predators beyond the direct effect of predation.
The correlations between dimensions of the normal tendon and tendinopathy changed Achilles tendon in routine magnetic resonance imaging
Authors: Szaro Pawel , Ghali Gataa Khaldun 
Published: March 2021

AbstractThis comparative study aimed to investigate how tendinopathy-related lesions change correlations in the dimensions of the Achilles tendon. Our experimental group included 74 patients. The mean age was 52.9 ± 10.4 years. The control group included 81 patients with a mean age was 35.2 ± 13.6 years, p < .001. The most significant difference in correlation was the thickness of the tendon and the midportion's width, which was more significant in the tendinopathy (r = .49 vs. r = .01, p < .001). The correlation was positive between width and length of the insertion but negative in normal tendons (r = .21 vs. r = − .23, p < .001). The correlation was between the midportions width in tendinopathy and the tendon's length but negative in the normal tendon (r = .16 vs. r = − .23, p < .001). The average thickness of the midportion in tendinopathy was 11.2 ± 3.3 mm, and 4.9 ± 0.5 mm in the control group, p < .001. The average width of the midportion and insertion was more extensive in the experimental group, 17.2 ± 3.1 mm vs. 14.7 ± 1.8 mm for the midportion and 31.0 ± 3.9 mm vs. 25.7 ± 3.0 mm for insertion, respectively, p < .001. The tendon's average length was longer in tendinopathy (83.5 ± 19.3 mm vs. 61.5 ± 14.4 mm, p < .001). The dimensions correlations in normal Achilles tendon and tendinopathic tendon differ significantly.
Validation of a high-fidelity training model for fetoscopic spina bifida surgery
Authors: Joyeux Luc , Javaux Allan , Eastwood Mary P. , De Bie Felix R. , Van den Bergh Gert , Degliuomini Rebecca S. , Vergote Simen , Micheletti Talita , Callewaert Geertje , Ourselin Sebastien , De Coppi Paolo , Van Calenbergh Frank , Vander Poorten Emmanuel , Deprest Jan 
Published: March 2021

AbstractOpen fetal surgery for spina bifida (SB) is safe and effective yet invasive. The growing interest in fetoscopic SB repair (fSB-repair) prompts the need for appropriate training. We aimed to develop and validate a high-fidelity training model for fSB-repair. fSB-repair was simulated in the abdominal cavity and on the stomach of adult rabbits. Laparoscopic fetal surgeons served either as novices (n = 2) or experts (n = 3) based on their experience. Technical performance was evaluated using competency Cumulative Sum (CUSUM) analysis and the group splitting method. Main outcome measure for CUSUM competency was a composite binary outcome for surgical success, i.e. watertight repair, operation time ≤ 180 min and Objective-Structured-Assessment-of-Technical-Skills (OSATS) score ≥ 18/25. Construct validity was first confirmed since competency levels of novices and experts during their six first cases using both methods were significantly different. Criterion validity was also established as 33 consecutive procedures were needed for novices to reach competency using learning curve CUSUM, which is a number comparable to that of clinical fSB-repair. Finally, we surveyed expert fetal surgeons worldwide to assess face and content validity. Respondents (26/49; 53%) confirmed it with ≥ 71% of scores for overall realism ≥ 4/7 and usefulness ≥ 3/5. We propose to use our high-fidelity model to determine and shorten the learning curve of laparoscopic fetal surgeons and retain operative skills.
Pressure effect of the mechanical, electronics and thermodynamic properties of Mg–B compounds A first-principles investigations
Authors: Zhang GuoWei , Xu Chao , Wang MingJie , Dong Ying , Sun FengEr , Ren XiaoYan , Xu Hong , Zhao YuHong 
Published: March 2021

AbstractFirst principle calculations were performed to investigate the structural, mechanical, electronic properties, and thermodynamic properties of three binary Mg–B compounds under pressure, by using the first principle method. The results implied that the structural parameters and the mechanical properties of the Mg–B compounds without pressure are well matched with the obtainable theoretically simulated values and experimental data. The obtained pressure–volume and energy–volume revealed that the three Mg–B compounds were mechanically stable, and the volume variation decreases with an increase in the boron content. The shear and volume deformation resistance indicated that the elastic constant Cij and bulk modulus B increased when the pressure increased up to 40 GPa, and that MgB7 had the strongest capacity to resist shear and volume deformation at zero pressure, which indicated the highest hardness. Meanwhile, MgB4 exhibited a ductility transformation behaviour at 30 GPa, and MgB2 and MgB7 displayed a brittle nature under all the considered pressure conditions. The anisotropy of the three Mg–B compounds under pressure were arranged as follows: MgB4 > MgB2 > MgB7. Moreover, the total density of states varied slightly and decreased with an increase in the pressure. The Debye temperature ΘD of the Mg–B compounds gradually increased with an increase in the pressure and the boron content. The temperature and pressure dependence of the heat capacity and the thermal expansion coefficient α were both obtained on the basis of Debye model under increased pressure from 0 to 40 GPa and increased temperatures. This paper brings a convenient understanding of the magnesium–boron alloys.
Reduced spontaneous itch in mouse models of cholestasis
Authors: Langedijk Jacqueline , Bolier Ruth , Tolenaars Dagmar , ten Bloemendaal Lysbeth , Duijst Suzanne , de Waart Dirk , Beuers Ulrich , Bosma Piter , Elferink Ronald Oude 
Published: March 2021

AbstractPruritus is one of the most distressing symptoms in cholestatic patients. Plasma autotaxin (ATX) activity correlates with the severity of pruritus in cholestatic patients, but the pathophysiology is unclear. To study pruritus in mice, we measured scratch activity in cholestatic Atp8b1 mutant mice, a model for Progressive Familial Intrahepatic Cholestasis type 1, and wild type mice (WT) with alpha-naphthylisothiocyanate (ANIT)-induced cholestasis. To induce cholestasis, Atp8b1 mutant mice received a diet containing 0.1% cholic acid (CA) and WT mice were treated with ANIT. In these mice ATX was also overexpressed by transduction with AAV-ATX. Scratch activity was measured using an unbiased, electronic assay. Marked cholestasis was accomplished in both Atp8b1 mutant mice on a CA-supplemented diet and in ANIT-treatment in WT mice, but scratch activity was decreased rather than increased while plasma ATX activity was increased. Plasma ATX activity was further increased up to fivefold with AAV-ATX, but this did not induce scratch activity. In contrast to several reports two cholestatic mouse models did not display increased scratch activity as a measure of itch perception. Increasing plasma ATX activity by overexpression also did not lead to increased scratch activity in mice. This questions whether mice are suitable to study cholestatic itch.
A 14-gene gemcitabine resistance gene signature is significantly associated with the prognosis of pancreatic cancer patients
Authors: Wei Xing , Zhou Xiaochong , Zhao Yun , He Yang , Weng Zhen , Xu Chunfang 
Published: March 2021

AbstractTo identify a gemcitabine resistance-associated gene signature for risk stratification and prognosis prediction in pancreatic cancer. Pearson correlation analysis was performed with gemcitabine half maximal inhibitory concentration (IC50) data of 17 primary pancreatic cancer lines from Genomics of Drug Sensitivity in Cancer (GDSC) and the transcriptomic data from GDSC and Broad Institute Cancer Cell Line Encyclopedia, followed by risk stratification, expression evaluation, overall survival (OS) prediction, clinical data validation and nomogram establishment. Our biomarker discovery effort identified a 14-gene signature, most of which featured differential expression. The 14-gene signature was associated with poor OS in E-MTAB-6134 (HR 2.37; 95% CI 1.75–3.2; p < 0.0001), pancreatic cancer-Canada (PACA-CA) (HR 1.76; 95% CI 1.31–2.37; p = 0.00015), and 4 other independent validation cohorts: pancreatic cancer-Australia (PACA-AU) (HR 1.9; 95% CI 1.38–2.61; p < 0.0001), The Cancer Genome Atlas (TCGA) (HR 1.73; 95% CI 1.11–2.69; p = 0.014), GSE85916 (HR 1.97; 95% CI 1.14–3.42; p = 0.014) and GSE62452 (HR 1.82; 95% CI 1.02–3.24; p = 0.039). Multivariate analysis revealed that the 14-gene risk score was an independent pancreatic cancer outcome predictor in E-MTAB-6134 (p < 0.001) and TCGA (p = 0.006). A nomogram including the 14-gene was established for eventual clinical translation. We identified a novel gemcitabine resistance gene signature for risk stratification and robust categorization of pancreatic cancer patients with poor prognosis.
Multiparty weighted threshold quantum secret sharing based on the Chinese remainder theorem to share quantum information
Authors: Chou Yao-Hsin , Zeng Guo-Jyun , Chen Xing-Yu , Kuo Shu-Yu 
Published: March 2021

AbstractSecret sharing is a widely-used security protocol and cryptographic primitive in which all people cooperate to restore encrypted information. The characteristics of a quantum field guarantee the security of information; therefore, many researchers are interested in quantum cryptography and quantum secret sharing (QSS) is an important research topic. However, most traditional QSS methods are complex and difficult to implement. In addition, most traditional QSS schemes share classical information, not quantum information which makes them inefficient to transfer and share information. In a weighted threshold QSS method, each participant has each own weight, but assigning weights usually costs multiple quantum states. Quantum state consumption will therefore increase with the weight. It is inefficient and difficult, and therefore not able to successfully build a suitable agreement. The proposed method is the first attempt to build multiparty weighted threshold QSS method using single quantum particles combine with the Chinese remainder theorem (CRT) and phase shift operation. The proposed scheme allows each participant has its own weight and the dealer can encode a quantum state with the phase shift operation. The dividing and recovery characteristics of CRT offer a simple approach to distribute partial keys. The reversibility of phase shift operation can encode and decode the secret. The proposed weighted threshold QSS scheme presents the security analysis of external attacks and internal attacks. Furthermore, the efficiency analysis shows that our method is more efficient, flexible, and simpler to implement than traditional methods.
Corroborating behavioral evidence for the interplay of representational richness and semantic control in semantic word processing
Authors: Bechtold Laura , Bellebaum Christian , Hoffman Paul , Ghio Marta 
Published: March 2021

AbstractThis study aimed to replicate and validate concreteness and context effects on semantic word processing. In Experiment 1, we replicated the behavioral findings of Hoffman et al. (Cortex 63,250–266, https://doi.org/10.1016/j.cortex.2014.09.001, 2015) by applying their cueing paradigm with their original stimuli translated into German. We found concreteness and contextual cues to facilitate word processing in a semantic judgment task with 55 healthy adults. The two factors interacted in their effect on reaction times: abstract word processing profited more strongly from a contextual cue, while the concrete words’ processing advantage was reduced but still present. For accuracy, the descriptive pattern of results suggested an interaction, which was, however, not significant. In Experiment 2, we reformulated the contextual cues to avoid repetition of the to-be-processed word. In 83 healthy adults, the same pattern of results emerged, further validating the findings. Our corroborating evidence supports theories integrating representational richness and semantic control mechanisms as complementary mechanisms in semantic word processing.
Association between 16S rRNA gene mutations and susceptibility to amikacin in Mycobacterium avium Complex and Mycobacterium abscessus clinical isolates
Authors: Kim Su-Young , Kim Dae Hun , Moon Seong Mi , Song Ju Yeun , Huh Hee Jae , Lee Nam Yong , Shin Sung Jae , Koh Won-Jung , Jhun Byung Woo 
Published: March 2021

AbstractWe evaluated the association between 16S rRNA gene (rrs) mutations and susceptibility in clinical isolates of amikacin-resistant nontuberculous mycobacteria (NTM) in NTM-pulmonary disease (PD) patients. Susceptibility was retested for 134 amikacin-resistant isolates (minimum inhibitory concentration [MIC] ≥ 64 µg/ml) from 86 patients. Amikacin resistance was reconfirmed in 102 NTM isolates from 62 patients with either Mycobacterium avium complex-PD (MAC-PD) (n = 54) or M. abscessus-PD (n = 8). MICs and rrs mutations were evaluated for 318 single colonies from these isolates. For the 54 MAC-PD patients, rrs mutations were present in 34 isolates (63%), comprising all 31 isolates with amikacin MICs ≥ 128 µg/ml, but only three of 23 isolates with an MIC = 64 µg/ml. For the eight M. abscessus-PD patients, all amikacin-resistant (MIC ≥ 64 µg/ml) isolates had rrs mutations. In amikacin-resistant isolates, the A1408G mutation (n = 29) was most common. Two novel mutations, C1496T and T1498A, were also identified. The culture conversion rate did not differ by amikacin MIC. Overall, all high-level and 13% (3/23) of low-level amikacin-resistant MAC isolates had rrs mutations whereas mutations were present in all amikacin-resistant M. abscessus isolates. These findings are valuable for managing MAC- and M. abscessus-PD and suggest the importance of phenotypic and genotypic susceptibility testing.