bluuebunny/crossref_metadata_2025_split huggingface dataset:
THE DIRECTION OF LINKAGE DISEQUILIBRIUM
Authors: Langley Charles H , Crow James F 
Published: January 2021

ABSTRACT
The previous paper (LANGLEYT,O BARanId KOJIMA 1974) reports that the directional linkage disequilibria, Dw = PABPab-PAbPaB, tend to be negative for data between allozymes and linked to inversions. A and B stand for the two alleles with the greatest frequency in the population. In this paper we show that linkage disequilibrium in this direction is produced at equilibrium when double homozygotes have fitnesses that are a constant fraction of the product of the two component single homozygote fitnesses, a pattern that is frequently observed in experimental data.
GENE FLOW AND GENETIC DIFFERENTIATION
Authors: Spieth P T 
Published: January 2021

ABSTRACT
A brief analysis is presented for the effects of gene flow upon genetic differentiation within and between populations generated by mutation and drift. Previous results obtained with the "island" model are developed into a form that lends itself to biological interpretation. Attention is focused upon the effective local population size and the ratio of the genetic identity of two genes in different populations to that of two genes in the same population. The biological significance of this ratio, which is independent of population size, is discussed. Similarities between the results of this model and those of the "stepping-stone" model are noted.
LACK OF CHEMICALLY INDUCED MUTATION IN REPAIR-DEFICIENT MUTANTS OF YEAST
Authors: Prakash Louise 
Published: January 2021

ABSTRACT
Two genes, rad6 and rad9, that confer radiation sensitivity in the yeast Saccharomyces cerevisiae also greatly reduce the frequency of chemically-induced reversions of a tester mutant cyc1-131, which is a chain initiation mutant in the structural gene determining iso-1-cytochrome c. Mutations induced by ethyl methanesulfonate (EMS), diethyl sulfate (DES), methyl methanesulfonate (MMS), dimethyl sulfate (DMS), nitroquinoline oxide (NQO), nitrosoguanidine (NTG), nitrogen mustard (HN2), β-propiolactone, and tritiated uridine, as well as mutations induced by ultraviolet light (UV) and ionizing radiation were greatly diminished in strains homozygous for either the rad6 or rad9 gene. Nitrous acid and nitrosoimidazolidone (NIL), on the other hand, were highly mutagenic in these repair-deficient mutants, and at low doses, these mutagens acted with about the same efficiency as in the normal RAD strain. At high doses of either nitrous acid or NIL, however, reversion frequencies were significantly reduced in the two rad mutants compared to normal strains. Although both rad mutants are immutable to about the same extent, the rad9 strains tend to be less sensitive to the lethal effect of chemical mutagens than rad6 strains. It is concluded that yeast requires a functional repair system for mutation induction by chemical agents.
THE LOCUS FOR HUMAN ADENINE PHOSPHORIBOSYLTRANSFERASE ON CHROMOSOME NO. 16
Authors: Kahan Brenda , Held Karsten R , DeMars Robert 
Published: January 2021

ABSTRACT
Evidence for assigning the locus determining the structure of adenine phosphoribosyltransferase (APRT) to human chromosome No. 16 is presented. Hybrids of APRT-deficient mouse cells and of human fibroblasts having normal APRT were isolated by fusing the parental cells with Sendai virus, blocking de novo purine nucleotide synthesis with azaserine and selecting for hybrids that could use exogenous adenine. The hybrid clones that were studied had only APRT activity that was indistinguishable from human APRT with regard to electrophoretic migration and reaction with antibodies against the partially purified human enzyme. No. 16 was the only human chromosome consistently present in all of the clones, and in one clone, it was the only human chromosome detected. Selection against hybrid cells with 2,6-diaminopurine (DAP) yielded DAP-resistant survivors that lacked chromosome No. 16. One hybrid that originally had an intact No. 16 yielded adenine-utilizing subclones that lacked No. 16 but had a new submetacentric chromosome. The distribution of centromere-associated heterochromatin and the fluorescence pattern indicated that this chromosome consisted of a mouse telocentric chromosome and the long arm of No. 16. Cells having the submetacentric chromosome had human APRT. Both the enzyme and the chromosome were absent in DAP-resistant derivatives. These results suggest that the structure of APRT is defined by a locus on the long arm of human chromosome No. 16.
THE RIBOSOMES OF DROSOPHILA II. STUDIES ON INTRASPECIFIC VARIATION
Authors: Berger Edward M , Weber Lee 
Published: January 2021

ABSTRACT
Electrophoretic comparisons of 40S and 55S ribosomal subunit proteins from 18 strains of Drosophila melanogaster revealed the virtual absence of allelic variation. More detailed two-dimensional studies on the large subunit proteins in 6 of the strains demonstrated additional complexity but still no interstrain variation. The significance of these results is discussed with respect to present estimates of genic heterozygosity in natural populations.
GENETIC BACKGROUND AND THE FITNESS OF ALLOZYMES
Authors: Jones J S , Yamazaki T 
Published: January 2021

ABSTRACT
Experimental perturbations of gene frequency at the esterase-5 locus in Drosophila pseudoobscura were carried out in a series of population cages started with differing numbers of founder chromosomes. Cages founded with few chromosomes showed changes in gene frequency at the allozyme locus. Such changes were less marked in cages founded with a larger sample of chromosomes. These experiments show the importance of linkage disequilibrium in affecting allozyme frequencies, and emphasize the necessity of careful experimental design when studying fitness differences between allozymes in laboratory populations.
THE GENETIC VARIANCE FOR VIABILITY AND ITS COMPONENTS IN A LOCAL POPULATION OF DROSOPHILA MELANOGASTER
Authors: Mukai Terumi , Cardellino Ricardo A , Watanabe Takao K , Crow James F 
Published: January 2021

ABSTRACT
Two hundred and ninety second chromosomes extracted from a natural population of Drosophila melanogaster were analyzed to estimate the genetic variance of viability and its components by means of a partial diallel cross (Design II of Comstock and Robinson 1952). The additive and dominance variances are estimated to be 0.009 and 0.0012. Using the dominance variance and the inbreeding depression, the effective number of overdominant loci contributing to the variance in viability is estimated to be very small, a dozen or less. Either the actual number of loci is small, or the distribution of viabilities is strongly skewed with a large majority of very weakly selected loci. The additive variance in viability appears to be too large to be accounted for by recurrent harmful mutants or by overdominant loci at equilibrium with various genetic parameters estimated independently. The excess might be due to frequency-dependent selection, to negative correlations between viability and fertility, or possibly to the presence of a mutator. The selection for viability and fertility, or possibly to the presence of a mutator. The selection for viability at the average polymorphic locus must be very slight, of the order of 10-3 or less.
PARTIAL EXCLUSION BETWEEN T-EVEN BACTERIOPHAGES; AN INCIPIENT GENETIC ISOLATION MECHANISM
Authors: Russell Richard L , Huskey Robert J 
Published: January 2021

ABSTRACT
Conditional lethal mutant systems developed in T-even bacteriophages T2, T4 and T6 have been used to study the partial exclusion which characterizes mixed infections of these phages. In bacteria mixedly infected with T2 and T4, the dominant phage (T4) acts against localized exclusion sensitivity determinants in the genome of the excluded phage (T2). These determinants are clustered near genes controlling early functions; the determinants themselves do not appear among the progeny, but markers located close to them appear infrequently, by recombination. The excluding action of T4 does not depend on the action of any gene so far identified by conditional lethal mutations, nor does it depend on differences in DNA glucosylation between infecting phages. Regardless of mechanism, the genetic consequence of this partial exclusion is to limit genetic exchange between T2 and T4 in the region of the genome controlling early functions, while retaining the capacity for extensive exchange in other regions; in short, partial exclusion constitutes a localized genetic isolating mechanism. Related forms of partial exclusion characterize mixed infections of other T-even phages, including those of some phages newly isolated from nature.
FITNESS OF KARYOTYPES IN DROSOPHILA PSEUDOOBSCURA
Authors: Wasserman Marvin , Koepfer Helen Roberta 
Published: January 2021

ABSTRACT
In the dynamics of the survival of chromosomal polymorphism selection may be operating at the genic level, at the chromosomal level or at the supergene level. Tests designed to distinguish between these levels were run on Drosophila pseudoobscura. There was no evidence for heterosis, a necessary requirement for gene-determined chromosomal polymorphism. A strong chromosmal selection was observed. No evidence was found for the presence within one locality of more than a single superallele for each supergene (= gene order). These results are compared to those found by others.
THE WAXY LOCUS IN MAIZE III. EFFECT OF STRUCTURAL HETEROZYGOSITY ON INTRAGENIC RECOMBINATION AND FLANKING MARKER ASSORTMENT
Authors: Nelson Oliver E 
Published: January 2021

ABSTRACT
The effect of heterozygosity for structural rearrangements on recombination between two wx heteroalleles (C and 90) and the pattern of flanking markers in the resultant Wx gametes has been examined. The rearrangements are Tp9, an insertional translocation in which a segment of chromosome 3 has been inserted into the short arm of chromosome 9 close to the wx locus; In9a, a long pericentric inversion with wx in the inverted segment; and Rearr 9, a complex rearrangement of chromosome 9. Heterozygosity for rearrangements decreases the frequency of Wx gametes to varying degrees.—Heterozygosity for Tp9 enhances the proportion of Wx gametes that are apparent convertants and allows the conclusion that such gametes do not normally arise from an exchange in the wx locus plus a second exchange distal to wx. Heterozygosity for In9a markedly decreases the frequency of Wx gametes that are recombinant for outside markers but does not decrease the frequency of convertants.—Heterozygosity for Rearr 9 permits a low frequency of Wx gametes, all of which are apparent convertants.—A high proportion of the convertants have the flanking markers that entered the cross with C so recombination is polarized in normal homologs and in heterozygotes for all rearrangements.
THE MOLECULAR BASIS FOR ALLELIC COMPLEMENTATION OF ALCOHOL DEHYDROGENASE MUTANTS OF MAIZE
Authors: Schwartz Drew 
Published: January 2021

ABSTRACT
Studies on interallelic complementation with two temperature-sensitive alcohol dehydrogenase mutants in maize are described. The data suggest that the phenomenon results from instability or abnormal maturation of the mutant homodimer rather than correction of configurational defects in mutant heterodimers.
THE INFLUENCE OF CHROMOSOME CONTENT ON THE SIZE AND SHAPE OF SPERM HEADS IN DROSOPHILA MELANOGASTER AND THE DEMONSTRATION OF CHROMOSOME LOSS DURING SPERMIOGENESIS
Authors: Hardy Robert Walter 
Published: January 2021

ABSTRACT
The volumes of sperm heads were estimated from three-dimensional reconstructions of serially sectioned bundles of nearly mature spermatid nuclei. Cysts from males in which all sperm are expected to have comparable amounts of chromatin (X/Y and In(3LR)/+) show unimodal frequency distributions of nuclear volumes, whereas cysts from males in which meiotic segregation is expected to deliver unequal amounts of chromatin material to spermatid nuclei show two (XY/O and XY/Y) or more (T(2;3)/+ and C(2L);C(2R)) modes. The mean volumes of the subpopulations in these cases are related in the same proportions as the metaphase lengths of their chromosomal complements. Thus the volumes of sperm nuclei are proportional to their DNA content. Sperm head shape, on the other hand, does not appear to be very sensitive to chromosomal constitution, as heads of different size do not vary greatly in shape.—The numbers of sperm heads in the various size classes in a cyst depart from mendelian expectations; these departures are caused by the elimination, during individualization, of chromosomes contained within micronuclei that are formed in spermatids at the end of the second meiotic division. The effect of this chromosome loss is to increase the proportion of nullosomic gametes in the sperm pool.—The relative frequencies of XY-bearing and nullo-X, nullo-Y sperm in XY/O males were estimated from the volume measurements. Taking this estimate as a measure of the fertilizing population, it is possible to infer from the change in sex ratio over time following insemination, that XY-bearing sperm have an advantage of 1.5 over nullo-X, nullo-Y sperm in leaving the seminal receptacle of the female for fertilization of ova.
SELECTION IN COMPLEX GENETIC SYSTEMS III. AN EFFECT OF ALLELE MULTIPLICITY WITH TWO LOCI
Authors: Feldman Marcus W , Lewontin Richard C , Franklin Ian R , Christiansen Freddy B 
Published: January 2021

ABSTRACT
A two-locus model with three alleles at one locus and two at the other is studied. The viability system is such that all double heterozygotes have fitness unity, all single heterozygotes have fitness w &lt; 1 and all double homozygotes have fitness w2. The following are the major findings: 1. There are more stable equilibria for tight linkage than in the corresponding three-locus model, even though the number of chromosomes is lower. 2. The equilibria stable for tight linkage do not belong to a unique high complementarity class, as is the case for two alleles at each locus. Instead the strength of selection determines the structure of the equilibrium. 3. The increase in number of alleles seems to reduce the possible extent of assocation between the loci. 4. The measure of this association is not well defined, although we have suggested a statistically standard way of getting over this. 5. A mutation introduced while a population is in linkage disequilibrium may, per medium only of the change in number of alleles, destroy the linkage disequilibrium.
GENIC HETEROZYGOSITY AND PROTEIN POLYMORPHISM AMONG LOCAL POPULATIONS OF OENOTHERA BIENNIS
Authors: Levin Donald A 
Published: January 2021

ABSTRACT
Twenty enzyme loci were studied in 44 Illinois populations of Oenothera biennis; four were polymorphic. Most of the variation was distributed between populations. Fifty-nine percent of the populations had one genotype, 27% two genotypes and the remaining 16% from three to five genotypes; the average was 1.50. The proportion of genetic diversity present in single populations is.38 of that present in the state. Members of single populations were uniformly heterozygous for 1 to 4 loci. The mean heterozygosity per population ranged from 0 to 20%. For Illinois populations collectively, heterozygosity averaged 4.5%. There was much gene frequency heterogeneity between populations. The true standardized genetic variance among populations for alleles at polymorphic loci varied from.40 to.78. Populations from Cook County were much more similar inter se than those downstate, had fewer genotypes and polymorphic loci, and had less heterozygosity than downstate populations. The mean normalized genetic identity among Cook County populations was.987 versus.947 for downstate populations. The mean number of genotypes per population in Cook County was 1.06 versus 2.40 in downstate populations. There was only one polymorphic locus in Cook County, VLP. The genetic structure of Oe. biennis suggests that single populations are colonized by one, or at best a few individuals. Cook County populations are judged to be less variable than downstate populations because the mean age of the populations probably is less than that of those downstate.
GENETIC POLYMORPHISM AND EVOLUTION IN PARTHENOGENETIC ANIMALS. II. DIPLOID AND POLYPLOID SOLENOBIA TRIQUETRELLA (LEPIDOPTERA: PSYCHIDAE)
Authors: Lokki Juhani , Suomalainen Esko , Saura Anssi , Lankinen Pekka 
Published: January 2021

ABSTRACT
Genic polymorphism at sixteen enzyme loci of four different chromosomal races of Solenobia triquetrella (bisexual, two diploid parthenogenetic races and tetraploid parthenogenetic) has been studied by starch gel electrophoresis. Isolated small diploid bisexual populations have rather uniform allele frequencies at all loci which we have studied. Diploid and tetraploid parthenogenetic individuals of this species are in general as heterozygous as bisexual ones. All parthenogenetic local populations are different from each other in the Alps. These parthenogenetic genotypes cannot be derived from a common ancestor through single mutations but rather bear evidence for a polyphyletic origin of parthenogenesis in Solenobia triquetrella. In the marginal distribution areas of the species in northern Europe single genotypes are spread over far larger areas than in the mountain regions of central Europe. This may be due to the old origin of parthenogenesis and polyploidy in northern Europe. No new parthenogenetic and polyploid strains have lately arisen in the regions outside of the Alps.
THE DETERMINISTIC BEHAVIOR OF SELF-INCOMPATIBILITY ALLELES
Authors: Nagylaki Thomas 
Published: January 2021

ABSTRACT
For a system of n self-incompatibility alleles, neglecting mutation and random drift, it is shown that the completely symmetric equilibrium is locally stable, and any allelic frequency less than q = 1+a-(see PDF), where a = [2(n - 1)]-1, will increase. For all n, q &gt; (2n)-1, but if n &gt; &gt; 1, q ≈ (2n)-1.
COMPLEMENTATION ANALYSIS OF METHYL METHANE-SULFONATE-INDUCED RECESSIVE LETHAL MUTATIONS IN THE ZESTE-WHITE REGION OF THE X CHROMOSOME OF DROSOPHILA MELANOGASTER
Authors: Liu C P , Lim J K 
Published: January 2021

ABSTRACT
Recessive lethal mutations in the 3A1 to 3C2 region of the X chromosome of Drosophila melanogaster were detected in 113 of 33,544 sperm treated by feeding 5 mM methyl methanesulfonate in 1% sucrose for 22 hours. Seven of the 113 lethals were sterile, leaving 106 for analysis by complementation tests. With only one exception, these mutants were found to have lesions restricted to single loci. One of these single-site mutations was in gt, 2 in tko, 18 in zw-1, 12 in zw-8, 6 in zw-4, 3 in zw-10, 3 in zw-13, 21 in zw-2, 7 in zw-3, 5 in zw-6, 6 in zw-12, 1 in zw-7, 12 in zw-5, 5 in zw-11, and 3 in zw-9, One of the lethals, m69, was non-complementary to two adjacent loci, zw-2 and zw-3, possibly indicating a deletion encompassing two loci. The results confirm that there are at least 15 recessive lethal loci in the region and are consistent with the hypothesis of Lim and Snyder (1968 and 1974) that inability of monofunctional alkylating chemicals to induce deletion-associated mutations is a characteristic of the compounds.
MUTATOR GENES AND SELECTION FOR THE MUTATION RATE IN BACTERIA
Authors: Painter P R 
Published: January 2021

ABSTRACT
Gene frequencies in populations of haploid, asexual organisms are described by linear recurrence equations. Several models in which the mutation rate is controlled by one locus and the fitness is controlled at one or more other loci are developed. It is shown that good approximations can be introduced to give explicit solutions for the course of selection in these models. It is shown that a strong non-equilibrium selection for mutator genes is possible even when the presence of such a gene decreases the fitness of an individual. Experiments that corroborate these conclusions are discussed along with the effects of population size that determine the applicability of these results to natural populations.
Solving the frequency-domain acoustic VTI wave equation using physics-informed neural networks
Authors: Song Chao , Alkhalifah Tariq , Waheed Umair Bin 
Published: January 2021

SUMMARY
Frequency-domain wavefield solutions corresponding to the anisotropic acoustic wave equation can be used to describe the anisotropic nature of the Earth. To solve a frequency-domain wave equation, we often need to invert the impedance matrix. This results in a dramatic increase in computational cost as the model size increases. It is even a bigger challenge for anisotropic media, where the impedance matrix is far more complex. In addition, the conventional finite-difference method produces numerical dispersion artefacts in solving acoustic wave equations for anisotropic media. To address these issues, we use the emerging paradigm of physics-informed neural networks (PINNs) to obtain wavefield solutions for an acoustic wave equation for transversely isotropic (TI) media with a vertical axis of symmetry (VTI). PINNs utilize the concept of automatic differentiation to calculate their partial derivatives, which are free of numerical dispersion artefacts. Thus, we use the wave equation as a loss function to train a neural network to provide functional solutions to the acoustic VTI form of the wave equation. Instead of predicting the pressure wavefields directly, we solve for the scattered pressure wavefields to avoid dealing with the point-source singularity. We use the spatial coordinates as input data to the network, which outputs the real and imaginary parts of the scattered wavefields and auxiliary function. After training a deep neural network, we can evaluate the wavefield at any point in space almost instantly using this trained neural network without calculating the impedance matrix inverse. We demonstrate these features on a simple 2-D anomaly model and a 2-D layered model. Additional tests on a modified 3-D Overthrust model and a 2-D model with irregular topography further validate the effectiveness of the proposed method.
The deep population history in Africa
Authors: Hollfelder Nina , Breton Gwenna , Sjödin Per , Jakobsson Mattias 
Published: January 2021

Abstract
Africa is the continent with the greatest genetic diversity among humans and the level of diversity is further enhanced by incorporating non-majority groups, which are often understudied. Many of today’s minority populations historically practiced foraging lifestyles, which were the only subsistence strategies prior to the rise of agriculture and pastoralism, but only a few groups practicing these strategies remain today. Genomic investigations of Holocene human remains excavated across the African continent show that the genetic landscape was vastly different compared to today’s genetic landscape and that many groups that today are population isolate inhabited larger regions in the past. It is becoming clear that there are periods of isolation among groups and geographic areas, but also genetic contact over large distances throughout human history in Africa. Genomic information from minority populations and from prehistoric remains provide an invaluable source of information on the human past, in particular deep human population history, as Holocene large-scale population movements obscure past patterns of population structure. Here we revisit questions on the nature and time of the radiation of early humans in Africa, the extent of gene-flow among human populations as well as introgression from archaic and extinct lineages on the continent.