bluuebunny/crossref_metadata_2025_split huggingface dataset:
Total testosterone is not associated with lean mass or handgrip strength in pre-menopausal females
Authors: Alexander Sarah E. , Abbott Gavin , Aisbett Brad , Wadley Glenn D. , Hnatiuk Jill A. , Lamon Séverine 
Published: May 2021

AbstractThe aim of this study was to examine the relationship between endogenous testosterone concentrations and lean mass and handgrip strength in healthy, pre-menopausal females. Testosterone has been positively associated with lean mass and strength in young and older males. Whether this relationship exists in pre-menopausal females is unknown. Secondary data from the 2013–2014 National Health and Nutrition Examination Survey were used to test this relationship. Females were aged 18–40 (n = 716, age 30 ± 6 years, mean ± SD) and pre-menopausal. Multivariate linear regression models were used to examine associations between total testosterone, lean mass index (LMI) and handgrip strength. Mean ± SD testosterone concentration was 1.0 ± 0.6 nmol L−1 and mean free androgen index (FAI) was 0.02 ± 0.02. In pre-menopausal females, testosterone was not associated with LMI (β = 0.05; 95%CI − 0.04, 0.15; p = 0.237) or handgrip strength (β = 0.01; 95%CI − 0.11, 0.12; p = 0.926) in a statistically significant manner. Conversely, FAI was associated with LMI (β = − 0.03; 95%CI − 0.05, − 0.02; p = 0.000) in a quadratic manner, meaning LMI increases with increasing FAI levels. Handgrip strength was not associated with FAI (β = 0.06; 95%CI − 0.02, 0.15; p = 0.137). These findings indicate that FAI, but not total testosterone, is associated with LMI in pre-menopausal females. Neither FAI nor total testosterone are associated with handgrip strength in pre-menopausal females when testosterone concentrations are not altered pharmacologically.
Response to novelty induced by change in size and complexity of familiar objects in Lister-Hooded rats, a follow-up of 2019 study
Authors: Pisula Wojciech , Modlinska Klaudia , Chrzanowska Anna , Goncikowska Katarzyna 
Published: May 2021

AbstractThis study examines the relationship between the change in size and change in complexity of well-known/familiarized objects and exploratory activity regulation in rats. In our experiment, the rats were exposed to three types of environmental novelty in a well-familiarized chamber: (1) addition of new tunnels to the chamber, (2) increased size of a familiarized tunnel, and (3) increased complexity of the existing tunnels. The animals responded to the addition of new tunnels with a significant behavioural shift involving increased exploration of the newly installed tunnels. This effect was stable across all three test trials. The rats exposed to a change in size of the familiar object initially reacted with a behavioural shift towards the enlarged tunnel but then re-focused on the unchanged one. There was also a significant increase in the frequency of moving between the zones of the chamber. The experimental group exposed to an increased complexity of familiar objects responded with a pronounced behavioural shift towards the complex tunnel and then slightly intensified their exploration of the unchanged one. A decrease was also observed in the frequency of moving between the zones of the chamber in the first and second test trials. In the effect size analysis, no differences were found in any of the three groups, which suggests that all manipulations had similar impact. The data obtained in this study supports the view that in rats, curiosity is at least two-dimensional: activational and cognitive. The activational aspect of curiosity may be explained by novelty-related arousal processes, while the cognitive processes are activated at longer time intervals in response to more complex stimulation. The validation of this hypothesis requires further research involving manipulations with a recently standardized protocol for measuring free exploration.
Comparing physiological responses during cognitive tests in virtual environments vs. in identical real-world environments
Authors: Kalantari Saleh , Rounds James D. , Kan Julia , Tripathi Vidushi , Cruz-Garza Jesus G. 
Published: May 2021

AbstractImmersive virtual environments (VEs) are increasingly used to evaluate human responses to design variables. VEs provide a tremendous capacity to isolate and readily adjust specific features of an architectural or product design. They also allow researchers to safely and effectively measure performance factors and physiological responses. However, the success of this form of design-testing depends on the generalizability of response measurements between VEs and real-world contexts. At the current time, there is very limited research evaluating the consistency of human response data across identical real and virtual environments. Rendering tools were used to precisely replicate a real-world classroom in virtual space. Participants were recruited and asked to complete a series of cognitive tests in the real classroom and in the virtual classroom. Physiological data were collected during these tests, including electroencephalography (EEG), electrocardiography (ECG), electrooculography (EOG), galvanic skin response (GSR), and head acceleration. Participants’ accuracy on the cognitive tests did not significantly differ between the real classroom and the identical VE. However, the participants answered the tests more rapidly in the VE. No significant differences were found in eye blink rate and heart rate between the real and VR settings. Head acceleration and GSR variance were lower in the VE setting. Overall, EEG frequency band-power was not significantly altered between the real-world classroom and the VE. Analysis of EEG event-related potentials likewise indicated strong similarity between the real-world classroom and the VE, with a single exception related to executive functioning in a color-mismatch task.
On local intrinsic dimensionality of deformation in complex materials
Authors: Zhou Shuo , Tordesillas Antoinette , Pouragha Mehdi , Bailey James , Bondell Howard 
Published: May 2021

AbstractWe propose a new metric calleds-LID based on the concept ofLocal Intrinsic Dimensionalityto identify and quantify hierarchies of kinematic patterns in heterogeneous media.s-LID measures how outlying a grain’s motion is relative to itssnearest neighbors in displacement state space. To demonstrate the merits ofs-LID over the conventional measure of strain, we apply it to data on individual grain motions in a set of deforming granular materials. Several new insights into the evolution of failure are uncovered.First,s-LID reveals a hierarchy of concurrent deformation bands that prevails throughout loading history. These structures vary not only in relative dominance but also spatial and kinematic scales.Second,in the nascent stages of the pre-failure regime,s-LID uncovers a set of system-spanning, criss-crossing bands: microbands for smallsand embryonic-shearbands at larges, with the former being dominant. At the opposite extreme, in the failure regime, fully formed shearbands at largesdominate over the microbands. The novel patterns uncovered froms-LID contradict the common belief of a causal sequence where a subset of microbands coalesce and/or grow to form shearbands. Instead,s-LID suggests that the deformation of the sample in the lead-up to failure is governed by a complex symbiosis among these different coexisting structures, which amplifies and promotes the progressive dominance of the embryonic-shearbands over microbands.Third,we probed this transition from the microband-dominated regime to the shearband-dominated regime by systematically suppressing grain rotations. We found particle rotation to be an essential enabler of the transition to the shearband-dominated regime. When grain rotations are completely suppressed, this transition is prevented: microbands and shearbands coexist in relative parity.
Strong variations in urban allergenicity riskscapes due to poor knowledge of tree pollen allergenic potential
Authors: Sousa-Silva Rita , Smargiassi Audrey , Kneeshaw Daniel , Dupras Jérôme , Zinszer Kate , Paquette Alain 
Published: May 2021

AbstractExposure to allergenic tree pollen is an increasing environmental health issue in urban areas. However, reliable, well-documented, peer-reviewed data on the allergenicity of pollen from common tree species in urban environments are lacking. Using the concept of ‘riskscape’, we present and discuss evidence on how different tree pollen allergenicity datasets shape the risk for pollen-allergy sufferers in five cities with different urban forests and population densities: Barcelona, Montreal, New York City, Paris, and Vancouver. We also evaluate how tree diversity can modify the allergenic risk of urban forests. We show that estimates of pollen exposure risk range from 1 to 74% for trees considered to be highly allergenic in the same city. This variation results from differences in the pollen allergenicity datasets, which become more pronounced when a city’s canopy is dominated by only a few species and genera. In an increasingly urbanized world, diverse urban forests offer a potentially safer strategy aimed at diluting sources of allergenic pollen until better allergenicity data is developed. Our findings highlight an urgent need for a science-based approach to guide public health and urban forest planning.
In vitro performance of free and encapsulated bromelain
Authors: Ataide Janaína Artem , Cefali Letícia Caramori , Figueiredo Mariana Cecchetto , Braga Lúcia Elaine de Oliveira , Ruiz Ana Lúcia Tasca Gois , Foglio Mary Ann , Oliveira-Nascimento Laura , Mazzola Priscila Gava 
Published: May 2021

AbstractFor centuries, bromelain has been used to treat a range of ailments, even though its mechanism of action is not fully understood. Its therapeutic benefits include enzymatic debridement of the necrotic tissues of ulcers and burn wounds, besides anti-inflammatory, anti-tumor, and antioxidant properties. However, the protease is unstable and susceptible to self-hydrolysis over time. To overcome the stability issues of bromelain, a previous study formulated chitosan-bromelain nanoparticles (C-B-NP). We evaluated the optimized nanoformulation for in vitro antioxidant, cell antiproliferative activities and cell migration/proliferation in the scratch assay, comparing it with free bromelain. The antioxidant activity of free bromelain was concentration and time-dependent; after encapsulation, the activity level dropped, probably due to the slow release of protein from the nanoparticles. In vitro antiproliferative activity was observed in six tumor cell lines for free protein after 48 h of treatment (glioma, breast, ovarian, prostate, colon adenocarcinoma and chronic myeloid leukemia), but not for keratinocyte cells, enabling its use as an active topical treatment. In turn, C-B-NP only inhibited one cell line (chronic myeloid leukemia) and required higher concentrations for inhibition. After 144 h treatment of glioma cells with C-B-NP, growth inhibition was equivalent to that promoted by the free protein. This last result confirmed the delayed-release kinetics of the optimized formulation and bromelain integrity. Finally, a scratch assay with keratinocyte cells showed that C-B-NP achieved more than 90% wound retraction after 24 h, compared to no retraction with the free bromelain. Therefore, nanoencapsulation of bromelain with chitosan conferred physical protection, delayed release, and wound retraction activity to the formulation, properties that favor topical formulations with a modified release. In addition, the promising results with the glioma cell line point to further studies of C-B-NP for anti-tumor treatments.
Biochemical and structural insights into Rab12 interactions with RILP and its family members
Authors: Omar Jana , Rosenbaum Efrat , Efergan Adi , Sneineh Bayan Abu , Yeheskel Adva , Maruta Yuto , Fukuda Mitsunori , Sagi-Eisenberg Ronit 
Published: May 2021

AbstractAlongside its biosynthetic functions, the small GTPase Rab12 negatively regulates mast cell (MC) exocytosis by its interaction with RILP to promote retrograde transport of the MC secretory granules. Given the role of Rab effectors in mediating Rab functions, in this study we used biochemical and in silico tools to decipher Rab12 interactions with its RILP family effectors. We show that Rab12 interacts with RILP, RILP-L1 and RILP-L2 independently of each other, whereby lysine-71, in mouse Rab12, is critical for Rab12 interactions with RILP-L1 or RILP-L2, but is dispensable for the binding of RILP. Focusing on RILP, and relying on molecular dynamics simulations, functional mutational analyses and peptide inhibition assays, we propose a model for the Rab12-RILP complex, consisting of a RILP homodimer and a single molecule of active Rab12, that interacts with the RILP homology domain (RHD) of one RILP monomer and a C-terminal threonine in the other monomer via its switch I and switch II regions. Mutational analyses of RILP RHD also demonstrate its involvement in the regulation of MC secretory granule transport. Jointly, our results provide structural and functional insights into the Rab12-RILP complex on the basis of which new tools could be generated for decoding Rab12 functions.
Caesarean delivery is associated with increased blood pressure in young adult offspring
Authors: Rerkasem Amaraporn , Maessen Sarah E. , Wongthanee Antika , Pruenglampoo Sakda , Mangklabruks Ampica , Sripan Patumrat , Derraik José G. B. , Rerkasem Kittipan 
Published: May 2021

AbstractWe examined the associations between caesarean section (CS) delivery and cardiovascular risk factors in young adults in Thailand. Participants were 632 offspring from a birth cohort in Chiang Mai (Northern Thailand), born in 1989–1990 and assessed in 2010 at a mean age of 20.6 years, including 57 individuals (9.0%) born by CS and 575 born vaginally. Clinical assessments included anthropometry, blood pressure (BP), carotid intima-media thickness, and fasting blood glucose, insulin, and lipid profile. Young adults born by CS had systolic BP (SBP) 6.2 mmHg higher (p < 0.001), diastolic BP 3.2 mmHg higher (p = 0.029), and mean arterial pressure (MAP) 4.1 mmHg higher (p = 0.003) than those born vaginally. After covariate adjustments, SBP and MAP remained 4.1 mmHg (p = 0.006) and 2.9 mmHg (p = 0.021) higher, respectively, in the CS group. The prevalence of abnormal SBP (i.e., pre-hypertension or hypertension) in the CS group was 2.5 times that of those born vaginally (25.0% vs 10.3%; p = 0.003), with an adjusted relative risk of abnormal SBP 1.9 times higher (95% CI 1.15, 2.98; p = 0.011). There were no differences in anthropometry (including obesity risk) or other metabolic parameters. In this birth cohort in Thailand, CS delivery was associated with increased blood pressure in young adulthood.
Structural genomics approach to investigate deleterious impact of nsSNPs in conserved telomere maintenance component 1
Authors: Choudhury Arunabh , Mohammad Taj , Samarth Nikhil , Hussain Afzal , Rehman Md. Tabish , Islam Asimul , Alajmi Mohamed F. , Singh Shailza , Hassan Md. Imtaiyaz 
Published: May 2021

AbstractConserved telomere maintenance component 1 (CTC1) is an important component of the CST (CTC1-STN1-TEN1) complex, involved in maintaining the stability of telomeric DNA. Several non-synonymous single-nucleotide polymorphisms (nsSNPs) in CTC1 have been reported to cause Coats plus syndrome and Dyskeratosis congenital diseases. Here, we have performed sequence and structure analyses of nsSNPs of CTC1 using state-of-the-art computational methods. The structure-based study focuses on the C-terminal OB-fold region of CTC1. There are 11 pathogenic mutations identified, and detailed structural analyses were performed. These mutations cause a significant disruption of noncovalent interactions, which may be a possible reason for CTC1 instability and consequent diseases. To see the impact of such mutations on the protein conformation, all-atom molecular dynamics (MD) simulations of CTC1-wild-type (WT) and two of the selected mutations, R806C and R806L for 200 ns, were carried out. A significant conformational change in the structure of the R806C mutant was observed. This study provides a valuable direction to understand the molecular basis of CTC1 dysfunction in disease progression, including Coats plus syndrome.
An SIR-type epidemiological model that integrates social distancing as a dynamic law based on point prevalence and socio-behavioral factors
Authors: Cabrera Maritza , Córdova-Lepe Fernando , Gutiérrez-Jara Juan Pablo , Vogt-Geisse Katia 
Published: May 2021

AbstractModeling human behavior within mathematical models of infectious diseases is a key component to understand and control disease spread. We present a mathematical compartmental model of Susceptible–Infectious–Removed to compare the infected curves given by four different functional forms describing the transmission rate. These depend on the distance that individuals keep on average to others in their daily lives. We assume that this distance varies according to the balance between two opposite thrives: the self-protecting reaction of individuals upon the presence of disease to increase social distancing and their necessity to return to a culturally dependent natural social distance that occurs in the absence of disease. We present simulations to compare results for different society types on point prevalence, the peak size of a first epidemic outbreak and the time of occurrence of that peak, for four different transmission rate functional forms and parameters of interest related to distancing behavior, such as: the reaction velocity of a society to change social distance during an epidemic. We observe the vulnerability to disease spread of close contact societies, and also show that certain social distancing behavior may provoke a small peak of a first epidemic outbreak, but at the expense of it occurring early after the epidemic onset, observing differences in this regard between society types. We also discuss the appearance of temporal oscillations of the four different transmission rates, their differences, and how this oscillatory behavior is impacted through social distancing; breaking the unimodality of the actives-curve produced by the classical SIR-model.
Cues to gender and racial identity reduce creativity in diverse social networks
Authors: Baten Raiyan Abdul , Aslin Richard N. , Ghoshal Gourab , Hoque Ehsan 
Published: May 2021

AbstractThe characteristics of social partners have long been hypothesized as influential in guiding group interactions. Understanding how demographic cues impact networks of creative collaborators is critical for elevating creative performances therein. We conducted a randomized experiment to investigate how the knowledge of peers’ gender and racial identities distorts people’s connection patterns and the resulting creative outcomes in a dynamic social network. Consistent with prior work, we found that creative inspiration links are primarily formed with top idea-generators. However, when gender and racial identities are known, not only is there (1) an increase of $$82.03\%$$

82.03
%

in the odds of same-gender connections to persist (but not for same-race connections), but (2) the semantic similarity of idea-sets stimulated by these connections also increase significantly compared to demography-agnostic networks, negatively impacting the outcomes of divergent creativity. We found that ideas tend to be significantly more homogeneous within demographic groups than between, taking away diversity-bonuses from similarity-based links and partly explaining the results. These insights can inform intelligent interventions to enhance network-wide creative performances.
Exploring antibody repurposing for COVID-19: beyond presumed roles of therapeutic antibodies
Authors: Rawat Puneet , Sharma Divya , Srivastava Ambuj , Janakiraman Vani , Gromiha M. Michael 
Published: May 2021

AbstractThe urgent need for a treatment of COVID-19 has left researchers with limited choice of either developing an effective vaccine or identifying approved/investigational drugs developed for other medical conditions for potential repurposing, thus bypassing long clinical trials. In this work, we compared the sequences of experimentally verified SARS-CoV-2 neutralizing antibodies and sequentially/structurally similar commercialized therapeutic monoclonal antibodies. We have identified three therapeutic antibodies, Tremelimumab, Ipilimumab and Afasevikumab. Interestingly, these antibodies target CTLA4 and IL17A, levels of which have been shown to be elevated during severe SARS-CoV-2 infection. The candidate antibodies were evaluated further for epitope restriction, interaction energy and interaction surface to gauge their repurposability to tackle SARS-CoV-2 infection. Our work provides candidate antibody scaffolds with dual activities of plausible viral neutralization and immunosuppression. Further, these candidate antibodies can also be explored in diagnostic test kits for SARS-CoV-2 infection. We opine that this in silico workflow to screen and analyze antibodies for repurposing would have widespread applications.
A generative adversarial network-based abnormality detection using only normal images for model training with application to digital breast tomosynthesis
Authors: Swiecicki Albert , Konz Nicholas , Buda Mateusz , Mazurowski Maciej A. 
Published: May 2021

AbstractDeep learning has shown tremendous potential in the task of object detection in images. However, a common challenge with this task is when only a limited number of images containing the object of interest are available. This is a particular issue in cancer screening, such as digital breast tomosynthesis (DBT), where less than 1% of cases contain cancer. In this study, we propose a method to train an inpainting generative adversarial network to be used for cancer detection using only images that do not contain cancer. During inference, we removed a part of the image and used the network to complete the removed part. A significant error in completing an image part was considered an indication that such location is unexpected and thus abnormal. A large dataset of DBT images used in this study was collected at Duke University. It consisted of 19,230 reconstructed volumes from 4348 patients. Cancerous masses and architectural distortions were marked with bounding boxes by radiologists. Our experiments showed that the locations containing cancer were associated with a notably higher completion error than the non-cancer locations (mean error ratio of 2.77). All data used in this study has been made publicly available by the authors.