bluuebunny/crossref_metadata_2025_split huggingface dataset:
Combining Hydrologic Simulations and Stream‐network Models to Reveal Flow‐ecology Relationships in a Large Alpine Catchment
Authors: Larsen Stefano , Majone Bruno , Zulian Patrick , Stella Elisa , Bellin Alberto , Bruno Maria Cristina , Zolezzi Guido 
Published: March 2021

AbstractFlow regimes profoundly influence river organisms and ecosystem functions, but regulatory approaches often lack the scientific basis to support sustainable water allocation. In part, this reflects the challenge of understanding the ecological effects of flow variability over different temporal and spatial domains. Here, we use a process‐based distributed hydrological model to simulate 23 years of natural flow regime in 100 bioassessment sites across the Adige River network (NE Italy), and to identify typical nivo‐glacial, nivo‐pluvial, and pluvial reaches. We then applied spatial stream‐network models (SSN) to investigate the relationships between hydrologic and macroinvertebrate metrics while accounting for network spatial autocorrelation and local habitat conditions. Macroinvertebrate metrics correlated most strongly with summer, winter, and temporal variation in streamflow, but effects varied across flow regime types. For example (i) taxon richness appeared limited by high summer flows and high winter flows in nivo‐glacial and pluvial streams, respectively; (ii) invertebrate grazers increased proportionally with the annual coefficient of flow variation in nivo‐glacial streams but tended to decline with flow variation in pluvial streams. Although local land‐use and water quality also affected benthic communities, most variation in macroinvertebrate metrics was associated with spatial autocorrelation. These findings highlight the importance of developing environmental flow management policies in ways that reflect specific hydro‐ecological and land use contexts. Our analyses also illustrate the importance of spatially‐explicit approaches that account for auto‐correlation when quantifying flow‐ecology relationships.
Comparing Assimilation of Synthetic Soil Moisture Versus C‐Band Backscatter for Hyper‐Resolution Land Surface Modeling
Authors: Sun Leqiang , Belair Stephane , Carrera Marco L. , Bilodeau Bernard , Dabboor Mohammed 
Published: March 2021

AbstractThis paper presents the assimilation of synthetic surface soil moisture retrievals and C‐band backscatter signal in a 100‐meter resolution version of the Canadian Land Data Assimilation System (CaLDAS) on footprint scale soil moisture with a time interval of three hours. The synthetic surface soil moisture map was generated by extrapolating a regression relationship between in situ measurements and open loop land surface model outputs based on the soil texture of a given pixel. The surface roughness was inverted from RADARSAT‐2 imagery using a modified Integral Equation Model (IEM) model. Three hourly synthetic backscatter maps were created from this surface roughness and the synthetic soil moisture. The Ensemble Kalman filter (EnKF) with bias correction was applied to mitigate the impact of nonlinear errors introduced by multi‐sourced perturbations. Both time series and spatial maps were examined in the evaluation of the assimilation experiments. Results show that the assimilation of backscatter is as effective as assimilating soil moisture retrievals although the later has slightly better temporal statistics. Compared to the open loop, both approaches improved the analysis of surface and root zone soil moisture with significantly lower bias. For the later, the open loop average bias was reduced from −1.25 vol/vol to 0.59 vol/vol by backscatter assimilation and to 0.41 vol/vol by soil moisture assimilation.
Exovesicular-Shh confers Imatinib resistance by upregulating Bcl2 expression in chronic myeloid leukemia with variant chromosomes
Authors: Anusha  , Dalal Hamza , Subramanian Sitalakshmi , V. P. Snijesh , Gowda Divya A. , H. Krishnamurthy , Damodar Sharat , Vyas Neha 
Published: March 2021

AbstractChronic myeloid leukemia (CML) patients with complex chromosomal translocations as well as non-compliant CML patients often demonstrate short-lived responses and poor outcomes on the current therapeutic regimes using Imatinib and its variants. It has been derived so far that leukemic stem cells (LSCs) are responsible for Imatinib resistance and CML progression. Sonic hedgehog (Shh) signaling has been implicated in proliferation of this Imatinib-resistant CD34(+) LSCs. Our work here identifies the molecular mechanism of Shh-mediated mutation-independent Imatinib resistance that is most relevant for treating CML-variants and non-compliant patients. Our results elucidate that while Shh can impart stemness, it also upregulates expression of anti-apoptotic protein—Bcl2. It is the upregulation of Bcl2 that is involved in conferring Imatinib resistance to the CD34(+) LSCs. Sub-toxic doses of Bcl2 inhibitor or Shh inhibitor (<<IC50), when used as adjuvants along with Imatinib, can re-sensitize Shh signaling cells to Imatinib. Our work here highlights the need to molecularly stratify CML patients and implement combinatorial therapy to overcome the current limitations and improve outcomes in CML.
Typing FGFR2 translocation determines the response to targeted therapy of intrahepatic cholangiocarcinomas
Authors: Pu Xiaohong , Ye Qing , Cai Jing , Yang Xin , Fu Yao , Fan Xiangshan , Wu Hongyan , Chen Jun , Qiu Yudong , Yue Shen 
Published: March 2021

AbstractChromosomal translocations involving fibroblast growth factor receptor 2 (FGFR2) gene at the breakpoints are common genetic lesions in intrahepatic cholangiocarcinoma (ICC) and the resultant fusion protein products have emerged as promising druggable targets. However, predicting the sensitivity of FGFR2 fusions to FGFR kinase inhibitors is crucial to the prognosis of the ICC-targeted therapy. Here, we report identification of nine FGFR2 translocations out of 173 (5.2%) ICC tumors. Although clinicopathologically these FGFR2 translocation bearing ICC tumors are indistinguishable from the rest of the cohort, they are invariably of the mass-forming type originated from the small bile duct. We show that the protein products of FGFR2 fusions can be classified into three subtypes based on the breaking positions of the fusion partners: the classical fusions that retain the tyrosine kinase (TK) and the Immunoglobulin (Ig)-like domains (n = 6); the sub-classical fusions that retain only the TK domain without the Ig-like domain (n = 1); and the non-classical fusions that lack both the TK and Ig-like domains (n = 2). We demonstrate that cholangiocarcinoma cells engineered to express the classical and sub-classical fusions show sensitivity to FGFR-specific kinase inhibitors as evident by the suppression of MAPK/ERK and AKT/PI3K activities following the inhibitor treatment. Furthermore, the kinase-deficient mutant of the sub-classical fusion also lost its sensitivity to the FGFR-specific inhibitors. Taken together, our study suggests that it is essential to determine the breakpoint and type of FGFR2 fusions in the small bile duct subtype of ICC for the targeted treatment.
Microtubules orchestrate local translation to enable cardiac growth
Authors: Scarborough Emily A. , Uchida Keita , Vogel Maria , Erlitzki Noa , Iyer Meghana , Phyo Sai Aung , Bogush Alexey , Kehat Izhak , Prosser Benjamin L. 
Published: March 2021

AbstractHypertension, exercise, and pregnancy are common triggers of cardiac remodeling, which occurs primarily through the hypertrophy of individual cardiomyocytes. During hypertrophy, stress-induced signal transduction increases cardiomyocyte transcription and translation, which promotes the addition of new contractile units through poorly understood mechanisms. The cardiomyocyte microtubule network is also implicated in hypertrophy, but via an unknown role. Here, we show that microtubules are indispensable for cardiac growth via spatiotemporal control of the translational machinery. We find that the microtubule motor Kinesin-1 distributes mRNAs and ribosomes along microtubule tracks to discrete domains within the cardiomyocyte. Upon hypertrophic stimulation, microtubules redistribute mRNAs and new protein synthesis to sites of growth at the cell periphery. If the microtubule network is disrupted, mRNAs and ribosomes collapse around the nucleus, which results in mislocalized protein synthesis, the rapid degradation of new proteins, and a failure of growth, despite normally increased translation rates. Together, these data indicate that mRNAs and ribosomes are actively transported to specific sites to facilitate local translation and assembly of contractile units, and suggest that properly localized translation – and not simply translation rate – is a critical determinant of cardiac hypertrophy. In this work, we find that microtubule based-transport is essential to couple augmented transcription and translation to productive cardiomyocyte growth during cardiac stress.
An ecological network approach to predict ecosystem service vulnerability to species losses
Authors: Keyes Aislyn A. , McLaughlin John P. , Barner Allison K. , Dee Laura E. 
Published: March 2021

AbstractHuman-driven threats are changing biodiversity, impacting ecosystem services. The loss of one species can trigger secondary extinctions of additional species, because species interact–yet the consequences of these secondary extinctions for services remain underexplored. Herein, we compare robustness of food webs and the ecosystem services (hereafter ‘services’) they provide; and investigate factors determining service responses to secondary extinctions. Simulating twelve extinction scenarios for estuarine food webs with seven services, we find that food web and service robustness are highly correlated, but that robustness varies across services depending on their trophic level and redundancy. Further, we find that species providing services do not play a critical role in stabilizing food webs – whereas species playing supporting roles in services through interactions are critical to the robustness of both food webs and services. Together, our results reveal indirect risks to services through secondary species losses and predictable differences in vulnerability across services.
Contact-electrification-activated artificial afferents at femtojoule energy
Authors: Yu Jinran , Gao Guoyun , Huang Jinrong , Yang Xixi , Han Jing , Zhang Huai , Chen Youhui , Zhao Chunlin , Sun Qijun , Wang Zhong Lin 
Published: March 2021

AbstractLow power electronics endowed with artificial intelligence and biological afferent characters are beneficial to neuromorphic sensory network. Highly distributed synaptic sensory neurons are more readily driven by portable, distributed, and ubiquitous power sources. Here, we report a contact-electrification-activated artificial afferent at femtojoule energy. Upon the contact-electrification effect, the induced triboelectric signals activate the ion-gel-gated MoS2 postsynaptic transistor, endowing the artificial afferent with the adaptive capacity to carry out spatiotemporal recognition/sensation on external stimuli (e.g., displacements, pressures and touch patterns). The decay time of the synaptic device is in the range of sensory memory stage. The energy dissipation of the artificial afferents is significantly reduced to 11.9 fJ per spike. Furthermore, the artificial afferents are demonstrated to be capable of recognizing the spatiotemporal information of touch patterns. This work is of great significance for the construction of next-generation neuromorphic sensory network, self-powered biomimetic electronics and intelligent interactive equipment.
Preclinical efficacy and safety analysis of gamma-irradiated inactivated SARS-CoV-2 vaccine candidates
Authors: Sir Karakus Gozde , Tastan Cihan , Dilek Kancagi Derya , Yurtsever Bulut , Tumentemur Gamze , Demir Sevda , Turan Raife Dilek , Abanuz Selen , Cakirsoy Didem , Seyis Utku , Ozer Samed , Elibol Omer , Elek Muhammer , Ertop Gurcan , Arbak Serap , Acikel Elmas Merve , Hemsinlioglu Cansu , Kocagoz Ayse Sesin , Hatirnaz Ng Ozden , Akyoney Sezer , Sahin Ilayda , Ozbek Ugur , Telci Dilek , Sahin Fikrettin , Yalcin Koray , Ratip Siret , Ovali Ercument 
Published: March 2021

AbstractCOVID-19 outbreak caused by SARS-CoV-2 created an unprecedented health crisis since there is no vaccine for this novel virus. Therefore, SARS-CoV-2 vaccines have become crucial for reducing morbidity and mortality. In this study, in vitro and in vivo safety and efficacy analyzes of lyophilized vaccine candidates inactivated by gamma-irradiation were performed. The candidate vaccines in this study were OZG-3861 version 1 (V1), an inactivated SARS-CoV-2 virus vaccine, and SK-01 version 1 (V1), a GM-CSF adjuvant added vaccine. The candidate vaccines were applied intradermally to BALB/c mice to assess toxicity and immunogenicity. Preliminary results in vaccinated mice are reported in this study. Especially, the vaccine models containing GM-CSF caused significant antibody production with neutralization capacity in absence of the antibody-dependent enhancement feature, when considered in terms of T and B cell responses. Another important finding was that the presence of adjuvant was more important in T cell in comparison with B cell response. Vaccinated mice showed T cell response upon restimulation with whole inactivated SARS-CoV-2 or peptide pool. This study shows that the vaccines are effective and leads us to start the challenge test to investigate the gamma-irradiated inactivated vaccine candidates for infective SARS-CoV-2 virus in humanized ACE2 + mice.
Robotic assisted CyberKnife radiosurgery for the treatment of iris melanoma
Authors: Schmelter Valerie , Heidorn Sarah , Muacevic Alexander , Priglinger Siegfried G. , Foerster Paul , Liegl Raffael 
Published: March 2021

AbstractIris melanoma is a rare form of uveal melanoma with potential metastic spread. Treatment options include surgical resection, enucleation or irradiation. We analysed visual outcome, complication appearance and management in eight patients with iris melanoma following robotic-assisted CyberKnife treatment. Consecutive patients from the Department of Ophthalmology at University of Munich were included in the study if they had an iris melanoma that was treated with CyberKnife and had a minimum follow-up of 12 months. We evaluated tumor thickness, largest diameter, visual acuity and complications. 8 patients were included in this report. The median age was 74 years (range: 53–86 years). The median follow-up was 23 months (range 12–48 months). Tumor thickness decreased from 2.1 to 1.4 mm on average. Four out of eight patients showed stable or increased visual acuity compared to visual acuity at first visit. We did not find a correlation of applied radiation volume or radiation dose on visual outcome. Radiation keratopathy was the most common complication in five patients. No recurrences were noted. Robotic-assisted radiosurgery following CyberKnife is a promising non-invasive, single session treatment option for iris melanoma with comparable results regarding recurrence rate or complications to brachytherapy and proton beam therapy. All included patients showed good visual outcome.
Changes of antibiotic prescribing pattern and its resistance to E. Coli in South Korea: a 12-year retrospective observational study
Authors: Lee Geun Woo , Ryu Sukhyun , Park Juhee , Lee Eun Jee , Lee Kwang Jun , Tae Jungyeon , Hwang Youngsik , Kim Dong-Sook 
Published: March 2021

AbstractIn the present study, we investigated the pattern of changes in antibiotic prescription and antimicrobial resistance (AMR) in Escherichia coli in South Korea between 2007 and 2018. We collected data related to antibiotic prescription and AMR in E. coli from the national surveillance system. We used the Mann–Kendall test and Spearman’s correlation to identify the trends of antibiotic prescription and AMR in E. coli and to examine the relationship between them, respectively. Although we noted a significant decreasing trend of ampicillin and gentamicin prescriptions in all medical institutions, we identified a higher level of AMR in long-term care facilities than in other medical institutions. We did not identify a significant positive correlation between ampicillin and gentamicin prescriptions and their resistance in E. coli. However, we found a significant positive correlation between cefotaxime prescription and its resistance in E. coli in hospitals, long-term care facilities, and clinics. Our results strongly suggest that long-term care facilities in South Korea have the potential to sustain AMR epidemics and that more efforts are needed to curb AMR in E. coli. Further epidemiological studies using enhanced AMR surveillance are warranted.
Visibility graph based temporal community detection with applications in biological time series
Authors: Zheng Minzhang , Domanskyi Sergii , Piermarocchi Carlo , Mias George I. 
Published: March 2021

AbstractTemporal behavior is an essential aspect of all biological systems. Time series have been previously represented as networks. Such representations must address two fundamental problems on how to: (1) Create appropriate networks to reflect the characteristics of biological time series. (2) Detect characteristic dynamic patterns or events as network temporal communities. General community detection methods use metrics comparing the connectivity within a community to random models, or are based on the betweenness centrality of edges or nodes. However, such methods were not designed for network representations of time series. We introduce a visibility-graph-based method to build networks from time series and detect temporal communities within these networks. To characterize unevenly sampled time series (typical of biological experiments), and simultaneously capture events associated to peaks and troughs, we introduce the Weighted Dual-Perspective Visibility Graph (WDPVG). To detect temporal communities in individual signals, we first find the shortest path of the network between start and end nodes, identifying high intensity nodes as the main stem of our community detection algorithm that act as hubs for each community. Then, we aggregate nodes outside the shortest path to the closest nodes found on the main stem based on the closest path length, thereby assigning every node to a temporal community based on proximity to the stem nodes/hubs. We demonstrate the validity and effectiveness of our method through simulation and biological applications.
In vivo kinematics and cruciate ligament forces in bicruciate-retaining total knee arthroplasty
Authors: Kono Kenichi , Inui Hiroshi , Tomita Tetsuya , Yamazaki Takaharu , Konda Shoji , Taketomi Shuji , Tanaka Sakae , D’Lima Darryl D. 
Published: March 2021

AbstractWe analyzed the effects of bicruciate-retaining total knee arthroplasty (BCR-TKA) on knee kinematics and cruciate ligament forces. Patients (N = 15) with osteoarthritis (OA) and an intact anterior cruciate ligament (ACL) underwent magnetic resonance imaging and single-plane fluoroscopy to measure tibiofemoral kinematics during two deep knee bend activities before and after BCR-TKA: (1) weight-bearing squat; (2) non-weight-bearing cross-legged sitting. Forces in ligament bundles were calculated using VivoSim. The dynamic range of varus-valgus angulation decreased from 3.9 ± 4.4° preoperatively to 2.2 ± 2.7° postoperatively. Preoperatively, the medial femoral condyle translated anteriorly from 10° to 50° of flexion, and posteriorly beyond 50° of flexion. Postoperatively, the medial and lateral femoral condyles translated posteriorly throughout flexion in a medial pivot pattern. ACL forces were high in extension and decreased with flexion pre- and postoperatively. PCL forces increased with flexion preoperatively and did not change significantly postoperatively. Preoperatively, ACL forces correlated with anteroposterior translation of the femoral condyles. Postoperatively, PCL forces correlated with anteroposterior translation of the lateral femoral condyle. BCR-TKA altered knee kinematics during high flexion activity which correlated significantly with changes in cruciate ligament forces.
How mountains and elevations shape the spatial distribution of beetles in Peninsular Malaysia
Authors: Musthafa Muneeb M. , Abdullah Fauziah , Martínez-Falcón Ana Paola , de Bruyn Mark 
Published: March 2021

AbstractThis study was conducted to assess the spatial distribution of beetles in mountain ecosystems and their elevational diversity. Malaise, pitfall and light traps were used to collect beetles from nine different mountains in Malaysia from September 2014 to September 2016, where from Gunung Angsi, Gunung Belumut, Gunung Basor and Gunung Tebu samples were collected at 500 m and 1000 m (above sea level) elevations, while beetles were sampled at 500 m, 1000 m and 1500 masl from Gunung Benom, Gunung Inas, Cameron Highland, Gunung Besar Hantu and Gunung Basor. In this study, 9628 beetles belonging to 879 different species were collected with highest representation from family Staphylinidae and Carabidae. Chamah Highland had the highest beetle diversity followed by Gunung Benom, Gunung Inas, Cameron Highland, Gunung Belumut, and Gunung Basor. Chamah Highland was different to all mountains on abundance and species richness. The highest species richness was observed at 1000 m, followed by 500 m and 1500 m. We identified characteristic species associated with habitat conditions at Gunung Benoum and Gunung Inas mountains, according to INDVAL values. The beetle diversity of the sampled mountains showed multiple alpha and beta patterns according to type of mountain ecosystem and elevation, providing guidelines for the scientific community to underpin conservation efforts in Malaysia.
Presence of tophi is associated with a rapid decline in the renal function in patients with gout
Authors: Oh Yoon-Jeong , Moon Ki Won 
Published: March 2021

AbstractWe aimed to compare clinical characteristics of patients with and without tophi at the time of the diagnosis of gout and investigate the association of tophi and renal function in gout patients. The patients who were first diagnosed with gout at the Kangwon National University Hospital were retrospectively studied. Patients were divided into 2 groups according to the presence of tophi at the diagnosis. We compared clinical characteristics and the progression of renal dysfunction between the two groups. Of 276 patients, 66 (25.5%) initially presented with tophi. Tophi group was older, had a longer symptom duration, and a higher prevalence of multiple joint involvement than those without tophi. In multivariate logistic regression analysis, prolonged symptom duration and multiple joint involvement were significantly associated with increased risk of formation of tophi. The decline in the eGFR was more prominent in patients with tophi than in those without (− 4.8 ± 14.5 vs. − 0.7 ± 11.9 ml/min/1.73 m2/year, respectively; P = 0.039). The presence of tophi was significantly associated with a rapid decline in the eGFR (β = − 0.136; P = 0.042). In conclusion, the presence of tophi was associated with a rapid declining renal function. Therefore, an early diagnosis and closely monitoring of renal function might be important in gout patients with tophi.