bluuebunny/crossref_metadata_2025_split huggingface dataset:
Anopheles salivary antigens as serological biomarkers of vector exposure and malaria transmission: A systematic review with multilevel modelling
Authors: Kearney Ellen A , Agius Paul A , Chaumeau Victor , Cutts Julia C , Simpson Julie A , Fowkes Freya JI 
Published: December 2021

Background:Entomological surveillance for malaria is inherently resource-intensive and produces crude population-level measures of vector exposure which are insensitive in low-transmission settings. Antibodies against Anopheles salivary proteins measured at the individual level may serve as proxy biomarkers for vector exposure and malaria transmission, but their relationship is yet to be quantified.Methods:A systematic review of studies measuring antibodies against Anopheles salivary antigens (PROSPERO: CRD42020185449). Multilevel modelling (to account for multiple study-specific observations [level 1], nested within study [level 2], and study nested within country [level 3]) estimated associations between seroprevalence with Anopheles human biting rate (HBR) and malaria transmission measures.Results:From 3981 studies identified in literature searches, 42 studies across 16 countries were included contributing 393 study-specific observations of anti-Anopheles salivary antibodies determined in 42,764 samples. A positive association between HBR (log transformed) and seroprevalence was found; overall a twofold (100% relative) increase in HBR was associated with a 23% increase in odds of seropositivity (OR: 1.23, 95% CI: 1.10–1.37; p<0.001). The association between HBR and Anopheles salivary antibodies was strongest with concordant, rather than discordant, Anopheles species. Seroprevalence was also significantly positively associated with established epidemiological measures of malaria transmission: entomological inoculation rate, Plasmodium spp. prevalence, and malarial endemicity class.Conclusions:Anopheles salivary antibody biomarkers can serve as a proxy measure for HBR and malaria transmission, and could monitor malaria receptivity of a population to sustain malaria transmission. Validation of Anopheles species-specific biomarkers is important given the global heterogeneity in the distribution of Anopheles species. Salivary biomarkers have the potential to transform surveillance by replacing impractical, inaccurate entomological investigations, especially in areas progressing towards malaria elimination.Funding:Australian National Health and Medical Research Council, Wellcome Trust.
Development of a T-cell activation-related module with predictive value for the prognosis and immune checkpoint blockade therapy response in glioblastoma
Authors: Yan Zihao , Chu Siwen , Zhu Chen , Han Yunhe , Liang Qingyu , Shen Shuai , Cheng Wen , Wu Anhua 
Published: December 2021

Background
Despite the rise in the use of immune checkpoint blockade drugs (ICBs) in recent years, there are no ICB drugs that are currently approved or under large-scale clinical trials for glioblastoma (GBM). T-cells, which mainly mediate adaptive immunity, are an important part of the tumor immune microenvironment. The activation of T-cells in tumors plays a key role in evaluating the sensitivity of patients to immunotherapy. Therefore, we applied bioinformatics approaches to construct a T-cell activation related risk score to study the effect of the activation of T-cells on the prognosis and ICB response of patients with GBM.

Materials and Methods
This study collected TCGA, CGGA, and GSE16011 glioma cohorts, as well as the IMvigor210 immunotherapy dataset, with complete mRNA expression profiles and clinical information. GraphPad Prism 8 and R 3.6.3 were used for bioinformatics analysis and plotting.

Results
The activation of T-cells in patients with GBM is characterized by obvious heterogeneity. We established a T-cell activation-related risk score based on five univariate Cox regression prognostic genes (CD276, IL15, SLC11A1, TNFSF4, and TREML2) in GBM. The risk score was an independent risk factor for poor prognosis. The overall survival time of patients in the high-risk group was significantly lower than in the low-risk group. Moreover, the high-risk score was accompanied by a stronger immune response and a more complex tumor immune microenvironment. “Hot tumors” were mainly enriched in the high-risk group, and high-risk group patients highly expressed inhibitory immune checkpoints (PD1, PD-L1, TIM3 etc.). By combining the risk and priming scores we obtained the immunotherapy score, which was shown to be a good evaluation index for sensitivity to GBM immunotherapy.

Conclusions
As an independent risk factor for poor prognosis, the T-cell activation-related risk score, combined with other clinical characteristics, could efficiently evaluate the survival of patients with GBM. The immunotherapy score obtained by combining the risk and priming scores could evaluate the ICB response of patients with GBM, providing treatment opportunities.
Small herbivores and abiotic heterogeneity promote trait variation of a saltmarsh plant in local communities
Authors: Chen Qingqing , Smit Christian , Pen Ido , Olff Han 
Published: December 2021

Intraspecific trait variation (ITV) enables plants to respond to global changes. However, causes for ITV, especially from biotic components such as herbivory, are not well understood. We explored whether small vertebrate herbivores (hares and geese) impact ITV of a dominant clonal plant (Elytrigia atherica) in local communities. Moreover, we looked at the relative importance of their direct (e.g., selective grazing) and indirect effects (altering genotypic richness/diversity and abiotic environment) on ITV. We used exclosures at two successional stages in a Dutch saltmarsh, where grazing pressure at the early successional stage was ca. 1.5 times higher than that of the intermediate successional stage. We measured key functional traits of E. atherica including height, aboveground biomass, flowering (flower or not), specific leaf area, and leaf dry matter content in local communities (1 m × 1 m plots) inside and outside the exclosures. We determined genotypic richness and diversity of each plant using molecular markers. We further measured abiotic variations in topography and clay thickness (a proxy for soil total nitrogen). Structural equation models revealed that small herbivores significantly promoted ITV in height and flowering at the early successional stage, while they marginally promoted ITV in height at the intermediate successional stage. Moreover, the direct effects of herbivores played a major role in promoting ITV. Small herbivores decreased genotypic diversity at the intermediate successional stage, but genotypic richness and diversity did not impact ITV. Small herbivores did not alter topographic variation and variation in clay thickness, but these variations increased ITV in all traits at the early successional stage. Small herbivores may not only impact trait means in plants as studies have shown but also their ITV.
Ferric citrate is a safe and digestible source of iron in broilers and piglets
Authors: Männer Klaus , Lester Hannah , Henriquez-Rodriguez Eliana 
Published: December 2021

BackgroundIron (Fe) is traditionally supplemented in poultry and swine diets using inorganic forms (e.g. sulfates, oxides). However, research suggests that organic sources are more beneficial due to greater bioavailability. In this paper, we present results from four studies aimed at assessing ferric citrate (CI-FER™, Akeso Biomedical Inc., Burlington, MA, USA) as a safe and effective source of Fe for broilers and piglets.MethodsA total of four studies were performed in Germany following standard farming practices for each species. One study in day-old broiler chicks and one study in weaned piglets were designed as target animal safety studies where animals were randomly allocated to one of three treatment groups: a negative control group, the proposed dose group and a multifold dose group. Broilers and pigs were fed the experimental diets for 35 and 42 days, respectively. In each study, average daily feed intake, average daily weight gain and feed conversion ratio were measured, and blood samples were taken at study end for routine biochemistry and haematology. The other two studies were designed to evaluate different sources of dietary Fe for weaned piglets bred and managed under standard farm conditions. All piglets received routine Fe injections (200 mg Fe dextran, intramuscular) on day 3 of age, as well as the experimental diets for 42 days. In both studies, performance parameters were measured. In one study, Fe digestibility and serum Fe, superoxide dismutase and haptoglobin were also measured. In all studies, the general health status of the animals was monitored daily and all culls and mortality recorded. Each study followed a complete randomised block design.ResultsIn broilers, ferric citrate was well tolerated up to 2,000 mg/kg feed (×10 the recommended inclusion rate) and no adverse effects on growth, blood parameters or mortality were observed. In piglets, ferric citrate was well tolerated up to 5,000 mg/kg feed (×10 the recommended inclusion rate) with no adverse effects on growth, blood parameters or mortality. In addition, piglets fed ferric citrate performed significantly better than animals fed the negative control diet (containing only endogenous Fe) and those fed inorganic forms of Fe. Moreover, piglets fed ferric citrate demonstrated improved Fe digestibility and improved oxidative status. Altogether, these findings show that ferric citrate is a safe and easily digestible source of dietary Fe for broilers and piglets.
Transcriptome analysis of transgenic apple fruit overexpressing microRNA172 reveals candidate transcription factors regulating apple fruit development at early stages
Authors: Zhou Zhe , Zhu Yanmin , Zhang Hengtao , Zhang Ruiping , Gao Qiming , Ding Tiyu , Wang Huan , Yan Zhenli , Yao Jia-Long 
Published: December 2021

Background
MicroRNA172 (miR172) has been proven to be critical for fruit growth, since elevated miR172 activity blocks the growth of apple (Malus x domestica Borkh.) fruit. However, it is not clear how overexpression of miR172 affects apple fruit developmental processes.

Methods
To answer this question, the present study, analyzed global transcriptional changes in miR172-overexpressing (miR172OX) and nongenetically modified wild-type (WT) apple fruit at two developmental stages and in different fruit tissues via RNA-seq. In addition, two cultivars, ‘Hanfu’ and ‘M9’, which have naturally fruit size variation, were included to identify miR172-dependent DEGs. qRT–PCRwas used to verify the reliability of our RNA-seq data.

Results
Overexpression of miR172 altered the expression levels of many cell proliferation- and cell expansion-related genes. Twenty-four libraries were generated, and 10,338 differentially expressed genes (DEGs) were detected between miR172OX and WT fruit tissues. ‘Hanfu’ and ‘M9’ are two common cultivars that bear fruit of different sizes (250 g and 75 g, respectively). Six libraries were generated, and 3,627 DEGs were detected between ‘Hanfu’ and ‘M9’. After merging the two datasets, 6,888 candidate miR172-specific DEGs were identified. The potential networks associated with fruit size triggered traits were defined among genes belonging to the families of hormone synthesis, signaling pathways, and transcription factors. Our comparative transcriptome analysis provides insights into transcriptome responses to miR172 overexpression in apple fruit and a valuable database for future studies to validate functional genes and elucidate the fruit developmental mechanisms in apple.
An estimate of the area of occupancy and population size of Brachycephalus tridactylus (Anura: Brachycephalidae) to reassess its conservation status, with a proposal for conservation measures
Authors: Bornschein Marcos R. , Nadaline Júnior , Ribeiro Luiz Fernando , Sandretti-Silva Giovanna , Rivas Maria Fernanda Ferreira , Guerra Bruno de Morais , Teixeira Larissa 
Published: December 2021

Background
We are experiencing a global crisis in conservation, which has led to the prioritization of targets, such as nations, regions, and animal groups, which are necessary while resources are disputed. Brazil is a priority not only because of its megadiversity, high rates of endemism, and frequent descriptions of new species but also because of its high levels of deforestation. Among the species groups prioritized for conservation is the anurans (Amphibia: Anura), the population of which is severely declining. One group of anurans is the genus Brachycephalus, which includes 37 endemic species in the Brazilian Atlantic Rainforest. Some of these species have highly restricted distributions (<100 ha). Thirty new species have been described since 2000, and 55.3% of all species are threatened with extinction. Brachycephalus tridactylus was only recently described and remains restricted to its type locality. Because of its reduced geographical distribution (0.41 km2), it has been proposed to be considered as Vulnerable. The objective of this study is to reevaluate the conservation status of Brachycephalus tridactylus and propose conservation measures.

Methods
We searched for new populations during 2016–2020, evaluated in loco impacts and potential impacts on the species’ population, and performed an analysis of the density of this population and estimated its size. International Union for Conservation of Nature (IUCN) criteria were used to assess the conservation status of the species.

Results
We recorded the species in seven new localities (from 715–1,140 m above sea level) in the state of São Paulo up to 33 km from the type locality of the species (in state of Paraná). We estimated the area of occupancy as 148.44 km2, densities as one calling male per 4.05 m2 and 130.00 m2, and a total population size of 4,429,722 adult individuals. Based on our finding, we proposed three lines of management: (1) formation of fire brigades, (2) management of residents’ mules in the conservation unit and surrounding areas, and (3) management of degraded areas. We recommend changing the species’ conservation status from Vulnerable to Endangered because of its fragmented distribution and decline in the area of occupancy and in the quality of its habitat. Our results have expanded the species previous geographic distribution and delimited areas without previous records. Our estimates of population density and size are in accordance with those verified for congeners. The conservation of this species benefits the environments and other species that inhabit them, being, therefore, strategic for receiving conservation actions that will spread throughout the ecosystem.
Physical activity and fitness in childhood cancer survivors: A scoping review
Authors: Wogksch Matthew D. , Goodenough Chelsea G. , Finch Emily R. , Partin Robyn E. , Ness Kirsten K. 
Published: December 2021

AbstractBackgroundEstimates indicate that nearly 8% of the over 500,000 survivors of childhood cancer living in the United States are frail in their fourth and fifth decades of life, a phenotype typically seen in geriatric populations. Participation in regular physical activity to improve physical fitness in healthy and diseased populations reduces risk for frail health by increasing physiologic reserve. However, physical activity may not have the same effects on fitness in childhood cancer survivors as it does among their peers with no cancer history.AimsThis scoping review seeks to describe associations between physical activity, physical fitness, chronic disease, and mortality in childhood cancer survivors.MethodsRelevant literature was identified through a comprehensive search in the PubMed, Web of Science, CINAHL, and Cochrane databases. A narrative synthesis was performed on observational studies that had physical activity or physical fitness clearly defined and compared with chronic disease outcomes.ResultsA total of 595 studies were screened, and results from 11 studies are presented. Childhood cancer survivors who participate in regular physical activity have improved markers of cardiovascular health, decreased risk of overt cardiovascular disease, and decreased risk of all‐cause mortality compared to survivors who are not physically active. Childhood cancer survivors who are physically fit have increased neurocognition, and decreased risk of all‐cause mortality compared to survivor's who are not fit. The differential effects of physical activity on fitness and health among childhood cancer survivors when compared to peers is potentially related to treatment exposures that damage cardiovascular tissue and impact regenerative potential.ConclusionResearch is needed to determine the optimal timing, frequency, intensity, and duration of physical activity necessary to optimize fitness in childhood cancer survivors.
Phase‐Control of Single‐Crystalline Inorganic Halide Perovskites via Molecular Coordination Engineering
Authors: Lin Qingdong , Bernardi Stefano , Shabbir Babar , Ou Qingdong , Wang Mingchao , Yin Wenping , Liu Shiqi , Chesman Anthony S. R. , Fürer Sebastian O. , Si Guangyuan , Medhekar Nikhil , Jasieniak Jacek , Widmer‐Cooper Asaph , Mao Wenxin , Bach Udo 
Published: December 2021

AbstractThe excellent optoelectronic properties and structural stability of inorganic cesium lead halide perovskites make them promising candidates for multiple types of optoelectronic devices. However, it remains a challenge to fabricate monocrystalline phase‐pure perovskite microstructures by facile low‐temperature solution‐based methods. Herein, a solution‐based method is demonstrated for controlling the crystallization of cesium halide perovskite microstructures. The structure of perovskite crystals is successfully tuned from non‐corner sharing Cs4PbBr6 (0D) to corner‐sharing CsPbBr3 (3D) to layered CsPb2Br5 (2D) by controlling water (H2O) to dimethylsulfoxide (DMSO) ratios. Molecular dynamics simulations and thermodynamic analysis indicate that the relative stability of Pb2+ and Br− ions in solution is the key factor in determining which crystals form at different H2O/DMSO ratios, with Cs+ simply incorporated as needed. The phase‐pure 0D crystals exhibit a high photoluminescence quantum yield of 41%, whilst the 2D crystals have an onset of absorption at 350 nm. Furthermore, the as‐synthesized, highly uniform 3D perovskite single crystals are coupled with nanofabricated interdigitated electrodes to show excellent X‐ray detection, with a high sensitivity of 8000 μC Gyair−1cm−2 obtained under a 0.5V external bias. This is comparable to many commercial X‐ray detectors (Si, α‐Se) and several times higher than other reported inorganic perovskite materials (CsPbBr3 quantum dots, Cs2AgBiBr6).
Fundamental Investigation of Biomass Interaction for Green Composites: Experiments and Molecular Dynamics Simulations
Authors: Zhou Shengfei , Khan Talia , Jin Kai , Lee Jimin , Buehler Markus J. 
Published: December 2021

AbstractUnderstanding biomass interaction is critical for bottom‐up design of novel biocomposites and existing manufacturing processes. In this study, interactions between bioadhesives (lignin, carbohydrates, or proteins) and fibers (cellulosic fiber or wood fiber) are elucidated via experimental bonding strength tests and molecular dynamics (MD) simulations. Experimental results reveal a good, nearly linear correlation between the composite's density and tensile strength, a finding which has rarely been reported previously. Adhesives are compared to one another: soy protein isolate is found to be the best for pinewood fiber, while apple pectin and soy protein isolate are the best for α‐cellulose fiber. It is further shown that the fiber type plays an important role in defining the composite strength. In agreement with experiments, the MD simulations at nanoscale predict a linear strength to density correlation; this is driven by the hydrogen bond (H‐bond) content in the composite. The H‐bond content is also found to determine the varied performances of different adhesives.
Reshapable MXene/Graphene Oxide/Polyaniline Plastic Hybrids with Patternable Surfaces for Highly Efficient Solar‐Driven Water Purification
Authors: Li Xiao‐Peng , Li Xiaofeng , Li Heguo , Zhao Yue , Wu Jing , Yan Shouke , Yu Zhong‐Zhen 
Published: December 2021

AbstractAlthough many solar‐driven water evaporators are developed for solar steam generation, most solarthermal energy conversion materials cannot be used repeatedly for constructing solarthermal water evaporators with variable shapes and patternable surfaces. Herein, reshapable Ti3C2Tx MXene/graphene oxide (GO)/polyaniline (PANI) (MGP) hybrids with variable shapes and patternable surfaces are fabricated by PANI‐assisted assembly of GO and MXene for efficient solar‐driven purifications of both seawater and wastewater. The variable shapes, patternable surfaces, and reusability of the plastic MGP hybrids are attributed to the strong interactions of PANI with both GO and MXene. Benefiting from the excellent solarthermal energy conversion of hydrophilic GO and MXene, the variable shapes and patternable surfaces of the MGP, and the reduced water vaporization enthalpy, the patternable MGP evaporators with flat and concave pyramid surfaces exhibit average water evaporation rates of as high as 2.89 and 3.30 kg m−2 h−1 under 1‐sun irradiation, respectively. When the plastic MGP is molded to a flower‐shaped evaporator, an outstanding evaporation rate of ≈3.94 kg m−2 h−1 with an exceptional evaporation efficiency of ≈135.6% is achieved under 1‐sun irradiation. The reusable MGP evaporators are highly efficient in generating clean water from both seawater and wastewater with satisfactory ion rejection rates of nearly 100%.
Superhydrophobic and Multifunctional Aerogel Enabled by Bioinspired Salvinia Leaf‐Like Structure
Authors: Zhang Xinhai , Lei Yang , Li Chenxi , Sun Gang , You Bo 
Published: December 2021

AbstractThe biomimetic exploration of functionalized materials is still of great importance to chemists and materials scientists, although the majority of the ingenious structures and functions of organisms are not simulated precisely. Here, taking inspiration from the strongly hydrophobic properties of the Salvinia leaf, a novel superhydrophobic and multifunctional aramid‐polyimide nanocomposite aerogel with Salvinia leaf‐like structures is fabricated (abbreviated to Bio‐ANFPI aerogel). The Bio‐ANFPI‐1 aerogel surface is covered with many of the generated spherical and hemispherical silica nanoparticles by a in situ siloxane polycondensation method, analogous to the Salvinia leaf surface, which facilitates the construction of the superhydrophobic aerogels (Bio‐ANFPI‐2) based on the Cassie‐Baxter model. It is found that the maximum stress and compressive modulus of the Bio‐ANFPI‐2 aerogel are improved by 174% and 245%, respectively. Further, the Bio‐ANFPI‐2 aerogel exhibits superhydrophobicity, with a water contact angle of 152° and a rolling angle of 8.3°. In addition, the aerogels possess a low thermal conductivity, excellent metal ion absorption capacity, and impressive absorption capacity of oil that maintained its initial value at ≈80% after 50 cycles at 88% compression. Overall, this work can enable a more general and practical manner of fabricating biomimetic high‐performance lightweight materials.