bluuebunny/crossref_metadata_2025_split huggingface dataset:
Classification of apatite structures via topological data analysis: a framework for a ‘Materials Barcode’ representation of structure maps
Authors: Broderick Scott , Dongol Ruhil , Zhang Tianmu , Rajan Krishna 
Published: June 2021

AbstractThis paper introduces the use of topological data analysis (TDA) as an unsupervised machine learning tool to uncover classification criteria in complex inorganic crystal chemistries. Using the apatite chemistry as a template, we track through the use of persistent homology the topological connectivity of input crystal chemistry descriptors on defining similarity between different stoichiometries of apatites. It is shown that TDA automatically identifies a hierarchical classification scheme within apatites based on the commonality of the number of discrete coordination polyhedra that constitute the structural building units common among the compounds. This information is presented in the form of a visualization scheme of a barcode of homology classifications, where the persistence of similarity between compounds is tracked. Unlike traditional perspectives of structure maps, this new “Materials Barcode” schema serves as an automated exploratory machine learning tool that can uncover structural associations from crystal chemistry databases, as well as to achieve a more nuanced insight into what defines similarity among homologous compounds.
Transferrin-modified liposomes triggered with ultrasound to treat HeLa cells
Authors: AlSawaftah Nour M. , Awad Nahid S. , Paul Vinod , Kawak Paul S. , Al-Sayah Mohammad H. , Husseini Ghaleb A. 
Published: June 2021

AbstractTargeted liposomes are designed to target specific receptors overexpressed on the surfaces of cancer cells. This technique ensures site-specific drug delivery to reduce undesirable side effects while enhancing the efficiency of the encapsulated therapeutics. Upon reaching the tumor site, these liposomes can be triggered to release their content in a controlled manner using ultrasound (US). In this study, drug release from pegylated calcein-loaded liposomes modified with transferrin (Tf) and triggered with US was evaluated. Low-frequency ultrasound at 20-kHz using three different power densities (6.2 mW/cm2, 9 mW/cm2and 10 mW/cm2) was found to increase calcein release. In addition, transferrin-conjugated pegylated liposomes (Tf-PEG liposomes) were found to be more sonosensitive compared to the non-targeted (control) liposomes. Calcein uptake by HeLa cells was found to be significantly higher with the Tf-PEG liposomes compared to the non-targeted control liposomes. This uptake was further enhanced following the exposure to low-frequency ultrasound (at 35 kHz). These findings show that targeted liposomes triggered with US have promising potential as a safe and effective drug delivery platform.
Rootstock effects on scion gene expression in maritime pine
Authors: López-Hinojosa M. , de María N. , Guevara M. A. , Vélez M. D. , Cabezas J. A. , Díaz L. M. , Mancha J. A. , Pizarro A. , Manjarrez L. F. , Collada C. , Díaz-Sala C. , Cervera Goy M. T. 
Published: June 2021

AbstractPines are the dominant conifers in Mediterranean forests. As long-lived sessile organisms that seasonally have to cope with drought periods, they have developed a variety of adaptive responses. However, during last decades, highly intense and long-lasting drought events could have contributed to decay and mortality of the most susceptible trees. Among conifer species, Pinus pinaster Ait. shows remarkable ability to adapt to different environments. Previous molecular analysis of a full-sib family designed to study drought response led us to find active transcriptional activity of stress-responding genes even without water deprivation in tolerant genotypes. To improve our knowledge about communication between above- and below-ground organs of maritime pine, we have analyzed four graft-type constructions using two siblings as rootstocks and their progenitors, Gal 1056 and Oria 6, as scions. Transcriptomic profiles of needles from both scions were modified by the rootstock they were grafted on. However, the most significant differential gene expression was observed in drought-sensitive Gal 1056, while in drought-tolerant Oria 6, differential gene expression was very much lower. Furthermore, both scions grafted onto drought-tolerant rootstocks showed activation of genes involved in tolerance to abiotic stress, and is most remarkable in Oria 6 grafts where higher accumulation of transcripts involved in phytohormone action, transcriptional regulation, photosynthesis and signaling has been found. Additionally, processes, such as those related to secondary metabolism, were mainly associated with the scion genotype. This study provides pioneering information about rootstock effects on scion gene expression in conifers.
Prefrontal tDCS attenuates counterfactual thinking in female individuals prone to self-critical rumination
Authors: Allaert Jens , De Raedt Rudi , van der Veen Frederik M. , Baeken Chris , Vanderhasselt Marie-Anne 
Published: June 2021

AbstractThe tendency to ruminate (i.e., repetitive negative self-referential thoughts that perpetuate depressive mood) is associated with (a) an elevated propensity to maladaptively experience counterfactual thinking (CFT) and regret, and (b) hypo-activity of the left dorsolateral prefrontal cortex (DLPFC). The goal of this study was to investigate whether anodal transcranial direct current stimulation (tDCS) over the left DLPFC, in function of self-critical rumination tendencies, momentarily reduces counterfactual thinking and regret (assessed via self-report and psychophysiological indices). Eighty healthy participants with different levels of self-critical rumination received either anodal or sham tDCS while performing a decision making task in which they were repeatedly confronted with optimal, suboptimal, and non-optimal choice outcomes. The results showed that among rumination-prone individuals, anodal (versus sham) tDCS was associated with decreased CFT and attenuated psychophysiological reactivity to the differential choice outcomes. Conversely, among low rumination-prone individuals, anodal (versus sham) tDCS was associated with increased CFT and regret, but in absence of any effects on psychophysiological reactivity. Potential working mechanisms for these differential tDCS effects are discussed. Taken together, these results provide initial converging evidence for the adaptive effects of left prefrontal tDCS on CFT and regret to personal choice outcomes among individuals prone to engage in self-critical rumination.
Electron work function: an indicative parameter towards a novel material design methodology
Authors: Luo Yuzhuo , Tang Yunqing , Chung Tsai-Fu , Tai Cheng-Ling , Chen Chih-Yuan , Yang Jer-Ren , Li D. Y. 
Published: June 2021

AbstractElectron work function (EWF) has demonstrated its great promise in materials analysis and design, particularly for single-phase materials, e.g., solute selection for optimal solid-solution strengthening. Such promise is attributed to the correlation of EWF with the atomic bonding and stability, which largely determines material properties. However, engineering materials generally consist of multiple phases. Whether or not the overall EWF of a complex multi-phase material can reflect its properties is unclear. Through investigation on the relationships among EWF, microstructure, mechanical and electrochemical properties of low-carbon steel samples with two-level microstructural inhomogeneity, we demonstrate that the overall EWF does carry the information on integrated electron behavior and overall properties of multiphase alloys. This study makes it achievable to develop “electronic metallurgy”—an electronic based novel alternative methodology for materials design.
Hepatic lipid signatures of little brown bats (Myotis lucifugus) and big brown bats (Eptesicus fuscus) at early stages of white-nose syndrome
Authors: Pannkuk Evan L. , Dorville Nicole A. S.-Y. , Dzal Yvonne A. , Fletcher Quinn E. , Norquay Kaleigh J. O. , Willis Craig K. R. , Fornace Albert J. , Laiakis Evagelia C. 
Published: June 2021

AbstractWhite-nose syndrome (WNS) is an emergent wildlife fungal disease of cave-dwelling, hibernating bats that has led to unprecedented mortalities throughout North America. A primary factor in WNS-associated bat mortality includes increased arousals from torpor and premature fat depletion during winter months. Details of species and sex-specific changes in lipid metabolism during WNS are poorly understood and may play an important role in the pathophysiology of the disease. Given the likely role of fat metabolism in WNS and the fact that the liver plays a crucial role in fatty acid distribution and lipid storage, we assessed hepatic lipid signatures of little brown bats (Myotis lucifugus) and big brown bats (Eptesicus fuscus) at an early stage of infection with the etiological agent, Pseudogymnoascus destructans (Pd). Differences in lipid profiles were detected at the species and sex level in the sham-inoculated treatment, most strikingly in higher hepatic triacylglyceride (TG) levels in E. fuscus females compared to males. Interestingly, several dominant TGs (storage lipids) decreased dramatically after Pd infection in both female M. lucifugus and E. fuscus. Increases in hepatic glycerophospholipid (structural lipid) levels were only observed in M. lucifugus, including two phosphatidylcholines (PC [32:1], PC [42:6]) and one phosphatidylglycerol (PG [34:1]). These results suggest that even at early stages of WNS, changes in hepatic lipid mobilization may occur and be species and sex specific. As pre-hibernation lipid reserves may aid in bat persistence and survival during WNS, these early perturbations to lipid metabolism could have important implications for management responses that aid in pre-hibernation fat storage.
Superhuman spatial hearing technology for ultrasonic frequencies
Authors: Pulkki Ville , McCormack Leo , Gonzalez Raimundo 
Published: June 2021

AbstractUltrasonic sources are inaudible to humans, and while digital signal processing techniques are available to bring ultrasonic signals into the audible range, there are currently no systems which also simultaneously permit the listener to localise the sources through spatial hearing. Therefore, we describe a method whereby an in-situ listener with normal binaural hearing can localise ultrasonic sources in real-time; opening-up new applications, such as the monitoring of certain forms of wild life in their habitats and man-made systems. In this work, an array of ultrasonic microphones is mounted to headphones, and the spatial parameters of the ultrasonic sound-field are extracted. A pitch-shifted signal is then rendered to the headphones with spatial properties dictated by the estimated parameters. The processing provides the listener with the spatial cues that would normally occur if the acoustic wave produced by the source were to arrive at the listener having already been pitch-shifted. The results show that the localisation accuracy delivered by the proof-of-concept device implemented here is almost as good as with audible sources, as tested both in the laboratory and under conditions in the field.
Confinement and entanglement dynamics on a digital quantum computer
Authors: Vovrosh Joseph , Knolle Johannes 
Published: June 2021

AbstractConfinement describes the phenomenon when the attraction between two particles grows with their distance, most prominently found in quantum chromodynamics (QCD) between quarks. In condensed matter physics, confinement can appear in quantum spin chains, for example, in the one dimensional transverse field Ising model (TFIM) with an additional longitudinal field, famously observed in the quantum material cobalt niobate or in optical lattices. Here, we establish that state-of-the-art quantum computers have reached capabilities to simulate confinement physics in spin chains. We report quantitative confinement signatures of the TFIM on an IBM quantum computer observed via two distinct velocities for information propagation from domain walls and their mesonic bound states. We also find the confinement induced slow down of entanglement spreading by implementing randomized measurement protocols for the second order Rényi entanglement entropy. Our results are a crucial step for probing non-perturbative interacting quantum phenomena on digital quantum computers beyond the capabilities of classical hardware.
Assessment of economic, thermal and hydraulic performances a corrugated helical heat exchanger filled with non-Newtonian nanofluid
Authors: Ibrahim Muhammad , Algehyne Ebrahem A. , Saeed Tareq , Berrouk Abdallah S. , Chu Yu-Ming , Cheraghian Goshtasp 
Published: June 2021

AbstractImproved heat transfer efficiency with considering economic analysis in heating systems is an interesting topic for researchers and scientists in recent years. This research investigates the heat transfer rate (HTR) and flow of non-Newtonian water-Carboxyl methyl cellulose (CMC) based Al2O3 nanofluid in a helical heat exchanger equipped with common and novel turbulators using two-phase model. The requirements for dimensions and cost reduction and also energy saving in thermal systems are the main goal of this study. According to gained results usage of corrugated channel in helical heat exchanger has a considerable influence on thermal and hydraulic performance evaluation criteria (THPEC) index of helical heat exchanger and can improve the THPEC index. Thus, Re = 5000 is obtained as an optimum value, in which the maximum THPEC value is achieved. As it is found in this paper, in case of using novel heat exchanger instead of the basic smooth system, the thermal properties (by considering Nusselt number) increases about 210%, the hydraulic performance (friction factor) reduces about 28%, performance evaluation criteria index increases about 57% and the material consumption (in case of similar THPEC) decreases about 31%. In another word, with considering economic analysis for the basic and novel system which has same efficiencies, the novel one has lower length and consequently 31% lower material.
Study on the prognosis predictive model of COVID-19 patients based on CT radiomics
Authors: Wang Dandan , Huang Chencui , Bao Siyu , Fan Tingting , Sun Zhongqi , Wang Yiqiao , Jiang Huijie , Wang Song 
Published: June 2021

AbstractMaking timely assessments of disease progression in patients with COVID-19 could help offer the best personalized treatment. The purpose of this study was to explore an effective model to predict the outcome of patients with COVID-19. We retrospectively included 188 patients (124 in the training set and 64 in the test set) diagnosed with COVID-19. Patients were divided into aggravation and improvement groups according to the disease progression. Three kinds of models were established, including the radiomics, clinical, and combined model. Receiver operating characteristic curves, decision curves, and Delong’s test were used to evaluate and compare the models. Our analysis showed that all the established prediction models had good predictive performance in predicting the progress and outcome of COVID-19.
Universal quantum computing using single-particle discrete-time quantum walk
Authors: Singh Shivani , Chawla Prateek , Sarkar Anupam , Chandrashekar C. M. 
Published: June 2021

AbstractQuantum walk has been regarded as a primitive to universal quantum computation. In this paper, we demonstrate the realization of the universal set of quantum gates on two- and three-qubit systems by using the operations required to describe the single particle discrete-time quantum walk on a position space. The idea is to utilize the effective Hilbert space of the single qubit and the position space on which it evolves in order to realize multi-qubit states and universal set of quantum gates on them. Realization of many non-trivial gates and engineering arbitrary states is simpler in the proposed quantum walk model when compared to the circuit based model of computation. We will also discuss the scalability of the model and some propositions for using lesser number of qubits in realizing larger qubit systems.
On-field phenotypic evaluation of sunflower populations for broad-spectrum resistance to Verticillium leaf mottle and wilt
Authors: Montecchia Juan F. , Fass Mónica I. , Cerrudo Ignacio , Quiroz Facundo J. , Nicosia Salvador , Maringolo Carla A. , Di Rienzo Julio , Troglia Carolina , Hopp H. Esteban , Escande Alberto , González Julio , Álvarez Daniel , Heinz Ruth A. , Lia Verónica V. , Paniego Norma B. 
Published: June 2021

AbstractSunflower Verticillium Wilt and Leaf Mottle (SVW), caused by Verticillium dahliae (Kleb.; Vd), is a soil-borne disease affecting sunflower worldwide. A single dominant locus, known as V1, was formerly effective in controlling North-American Vd races, whereas races from Argentina, Europe and an emerging race from USA overcome its resistance. This emphasizes the need for identifying broad-spectrum genetic resistance (BSR) sources. Here we characterize two sunflower mapping populations (MPs) for SVW resistance: a biparental MP and the association MP from the National Institute of Agricultural Technology (INTA), under field growing conditions. Nine field-trials (FTs) were conducted in highly infested fields in the most SVW-affected region of Argentina. Several disease descriptors (DDs), including incidence and severity, were scored across four phenological stages. Generalized linear models were fitted according to the nature of each variable, adjusting mean phenotypes for inbred lines across and within FTs. Comparison of these responses allowed the identification of novel BSR sources. Furthermore, we present the first report of SVW resistance heritability, with estimates ranging from 35 to 45% for DDs related to disease incidence and severity, respectively. This study constitutes the largest SVW resistance characterization reported to date in sunflower, identifying valuable genetic resources for BSR-breeding to cope with a pathogen of increasing importance worldwide.
Trigonal quasicrystalline states in $$30^\circ$$ rotated double moiré superlattices
Authors: Crosse J. A. , Moon Pilkyung 
Published: June 2021

AbstractWe study the lattice configuration and electronic structure of a double moiré superlattice, which is composed of a graphene layer encapsulated by two other layers in a way such that the two hexagonal moiré patterns are arranged in a dodecagonal quasicrystalline configuration. We show that there are between 0 and 4 such configurations depending on the lattice mismatch between graphene and the encapsulating layer. We then reveal the resonant interaction, which is distinct from the conventional 2-, 3-, 4-wave mixing of moiré superlattices, that brings together and hybridizes twelve degenerate Bloch states of monolayer graphene. These states do not fully satisfy the dodecagonal quasicrystalline rotational symmetry due to the symmetry of the wave vectors involved. Instead, their wave functions exhibit trigonal quasicrystalline order, which lacks inversion symmetry, at the energies much closer to the charge neutrality point of graphene.
Reconstruction of circRNA-miRNA-mRNA associated ceRNA networks reveal functional circRNAs in intracerebral hemorrhage
Authors: Liu Zhen , Wu Xinran , Yu Zihan , Tang Xiaobo 
Published: June 2021

AbstractCircular RNA (circRNA), a novel class of noncoding RNAs, has been used extensively to complement transcriptome remodeling in the central nervous system, although the genomic coverage provided has rarely been studied in intracerebral hemorrhage (ICH) and is limited and fails to provide a detailed picture of the cerebral transcriptome landscape. Here, we described sequencing-based transcriptome profiling, providing comprehensive analysis of cerebral circRNA, messenger RNA (mRNA) and microRNA (miRNA) expression in ICH rats. In the study, male Sprague–Dawley rats were subjected to ICH, and next-generation sequencing of RNAs isolated from non-hemorrhagic (Sham) and hemorrhagic (ICH) rat brain samples collected 7 (early phase) and 28 (chronic phase) days after insults, was conducted. Bioinformatics analysis was performed to determine miRNA binding sites and gene ontology of circRNAs, target genes of miRNAs, as well as biological functions of mRNAs, altered after ICH. These analyses revealed different expression profiles of circRNAs, mRNAs and miRNAs in day-7 and day-28 ICH groups, respectively, compared with the Sham. In addition, the expression signature of circRNAs was more sensitive to disease progression than that of mRNAs or miRNAs. Further analysis suggested two temporally specific circRNA-miRNA-mRNA networks based on the competitive endogenous RNA theory, which had profound impacts on brain activities after ICH. In summary, these results suggested an important role for circRNAs in the pathogenesis of ICH and in reverse remodeling based on self-protection support, providing deep insights into diverse possibilities for ICH therapy through targeting circRNAs.
Expedient assessment of post-infarct remodeling by native cardiac magnetic resonance imaging in mice
Authors: Lang Cajetan Immanuel , Vasudevan Praveen , Döring Piet , Gäbel Ralf , Lemcke Heiko , Lindner Tobias , Steinhoff Gustav , Krause Bernd Joachim , Vollmar Brigitte , Meinel Felix G. , Yücel Seyrani , Öner Alper , Ince Hüseyin , David Robert 
Published: June 2021

AbstractNovel therapeutic strategies aiming at improving the healing process after an acute myocardial infarction are currently under intense investigation. The mouse model plays a central role for deciphering the underlying mechanisms on a molecular and cellular level. Therefore, we intended to assess in-vivo post-infarct remodeling as comprehensively as possible using an expedient native magnetic resonance imaging (MRI) in the two most prominent infarct models, permanent ligation (PL) of the left anterior descending artery (LAD) versus ischemia reperfusion (I/R). Mice were subjected to either permanent or transient (45 min) occlusion of the LAD. After 3 weeks, examinations were performed with a 7-Tesla small animal MRI system. Data analysis was performed with the freely available software Segment. PL resulted in a massive dilation of the left ventricle, accompanied by hypertrophy of the non-infarcted myocardium and a decline of contractile function. These effects were less pronounced following I/R compared to healthy animals. Single plane assessments were not sufficient to capture the specific differences of left ventricular (LV) properties between the two infarct models. Bulls-eye plots were found to be an ideal tool for qualitative LV wall assessment, whereas a multi-slice sector-based analysis of wall regions is ideal to determine differences in hypertrophy, lateral wall thinning and wall thickening on a quantitative level. We combine the use of polar map-based analysis of LV wall properties with volumetric measurements using simple CINE CMR imaging. Our strategy represents a versatile and easily available tool for serial assessment of the LV during the remodeling process. Our study contributes to a better understanding of the effects of novel therapies targeting the healing of damaged myocardium.