bluuebunny/crossref_metadata_2025_split huggingface dataset:
Modeling Aspect‐Controlled Evolution of Ground Thermal Regimes on Montane Hillslopes
Authors: Rush M. , Rajaram H. , Anderson R. S. , Anderson S. P. 
Published: July 2021

AbstractThe seasonal evolution of the ground thermal regime in cold regions influences hydrologic flow paths, soil biogeochemistry, and hillslope geomorphology. In mountain environments, steep topography produces strong gradients in solar insolation, vegetation, and snowpack dynamics that lead to large differences in soil temperature over short distances, suggesting a need for high‐resolution, process‐based models that quantify the influence of topography. We present soil temperature and snow depth results from a coupled thermo‐hydrologic model compared to field observations from Gordon Gulch, a seasonally snow‐covered montane catchment in the Colorado Front Range in the Boulder Creek Critical Zone Observatory. The field site features two instrumented hillslopes with opposing aspects: Despite the persistent snowpack on the north‐facing slope, seasonally frozen ground is more prevalent there than the south‐facing slope, which experiences significantly higher incoming radiation that prevents the persistence of frozen ground. A novel modeling framework is developed by coupling a surface energy balance model incorporating solar radiation and snowpack processes to an existing subsurface model (PFLOTRAN‐ICE). The coupled model is used to reproduce strong aspect‐controlled differences in soil temperature and snow depth evident from observations during water years 2013–2016, including a higher incidence of frozen ground under the north‐facing slope. Representation of the snowpack and its insulating effects significantly improves soil temperature estimates on the north‐facing slope, particularly the duration of soil freezing in the spring, which is underestimated by 1–2 months without including the snowpack.
Delineating Source Contributions to Stream Dissolved Organic Matter Composition Under Baseflow Conditions in Forested Headwater Catchments
Authors: da Silva M. P. , Blaurock K. , Beudert B. , Fleckenstein J. H. , Hopp L. , Peiffer S. , Reemtsma T. , Lechtenfeld O. J. 
Published: July 2021

AbstractDissolved organic matter (DOM) composition in streams reflects the dynamic interplay between DOM sources, mobilization mechanisms, and biogeochemical transformations within soils and receiving water bodies. The information regarding DOM sources being mobilized during baseflow can improve our ability to predict hydrological and biogeochemical responses to environmental changes, with implications for catchment management strategies. The objective of this study was to characterize the spatial changes in DOM composition along a headwater stream in a small mountainous catchment during baseflow and to link the findings in‐stream with possible DOM sources in the catchment. DOM was monitored over 1.5 years at three sites in the Große Ohe catchment (Bavarian Forest National Park, Southeast Germany) which strongly varied in slope between upper and lower part of the catchment, using UV‐Vis absorption indicators of aromaticity (SUVA) and molecular weight (E2:E3) from high‐frequency probe measurements. Additionally, discrete samples were collected and analyzed by ultrahigh‐resolution Fourier transform ion cyclotron resonance mass spectrometry (FT‐ICR‐MS). At baseflow conditions, dissolved organic carbon (DOC) concentrations, a proxy of DOM amount, ranged from 1.5 to 4.7 mg L−1, but were similar along the stream. However, DOM quality exhibited clear spatial patterns, with overall high aromatic and low molecular weight DOM in the lower part of the catchment, which has a higher proportion of hydromorphic soils. Moreover, molecular data revealed that oxygen‐rich, aromatic compounds increased in their abundance at high DOC concentrations in both the steep upper and the flatter lower part of the catchment, with also additional input of oxygen‐depleted aromatic compounds identified in the lower part. In contrast, nitrogen‐rich aliphatic compounds were negatively correlated with DOC concentration, indicating a higher contribution of deep groundwater at low DOC concentrations.
Polygenic risk score and risk of monoclonal B-cell lymphocytosis in caucasians and risk of chronic lymphocytic leukemia (CLL) in African Americans
Authors: Kleinstern Geffen , Weinberg J. Brice , Parikh Sameer A. , Braggio Esteban , Achenbach Sara J. , Robinson Dennis P. , Norman Aaron D. , Rabe Kari G. , Boddicker Nicholas J. , Vachon Celine M. , Lesnick Connie E. , Call Timothy G. , Brander Danielle M. , Rassenti Laura Z. , Kipps Thomas J. , Olson Janet E. , Cerhan James R. , Kay Neil E. , Furman Richard R. , Hanson Curtis A. , Shanafelt Tait D. , Slager Susan L. 
Published: July 2021

AbstractMonoclonal B-cell lymphocytosis (MBL) is a precursor to CLL. Other than age, sex, and CLL family-history, little is known about factors associated with MBL risk. A polygenic-risk-score (PRS) of 41 CLL-susceptibility variants has been found to be associated with CLL risk among individuals of European-ancestry(EA). Here, we evaluate these variants, the PRS, and environmental factors for MBL risk. We also evaluate these variants and the CLL-PRS among African-American (AA) and EA-CLL cases and controls. Our study included 560 EA MBLs, 869 CLLs (696 EA/173 AA), and 2866 controls (2631 EA/235 AA). We used logistic regression, adjusting for age and sex, to estimate odds ratios (OR) and 95% confidence intervals within each race. We found significant associations with MBL risk among 21 of 41 variants and with the CLL-PRS (OR = 1.86, P = 1.9 × 10−29, c-statistic = 0.72). Little evidence of any association between MBL risk and environmental factors was observed. We observed significant associations of the CLL-PRS with EA-CLL risk (OR = 2.53, P = 4.0 × 10−63, c-statistic = 0.77) and AA-CLL risk (OR = 1.76, P = 5.1 × 10−5, c-statistic = 0.62). Inherited genetic factors and not environmental are associated with MBL risk. In particular, the CLL-PRS is a strong predictor for both risk of MBL and EA-CLL, but less so for AA-CLL supporting the need for further work in this population.
Metalorganic chemical vapor deposition of InN quantum dots and nanostructures
Authors: Reilly Caroline E. , Keller Stacia , Nakamura Shuji , DenBaars Steven P. 
Published: July 2021

AbstractUsing one material system from the near infrared into the ultraviolet is an attractive goal, and may be achieved with (In,Al,Ga)N. This III-N material system, famous for enabling blue and white solid-state lighting, has been pushing towards longer wavelengths in more recent years. With a bandgap of about 0.7 eV, InN can emit light in the near infrared, potentially overlapping with the part of the electromagnetic spectrum currently dominated by III-As and III-P technology. As has been the case in these other III–V material systems, nanostructures such as quantum dots and quantum dashes provide additional benefits towards optoelectronic devices. In the case of InN, these nanostructures have been in the development stage for some time, with more recent developments allowing for InN quantum dots and dashes to be incorporated into larger device structures. This review will detail the current state of metalorganic chemical vapor deposition of InN nanostructures, focusing on how precursor choices, crystallographic orientation, and other growth parameters affect the deposition. The optical properties of InN nanostructures will also be assessed, with an eye towards the fabrication of optoelectronic devices such as light-emitting diodes, laser diodes, and photodetectors.
Biallelic P4HTM variants associated with HIDEA syndrome and mitochondrial respiratory chain complex I deficiency
Authors: Hay Eleanor , Wilson Louise C. , Hoskins Bethan , Samuels Martin , Munot Pinki , Rahman Shamima 
Published: July 2021

AbstractWe report a patient with profound congenital hypotonia, central hypoventilation, poor visual behaviour with retinal hypopigmentation, and significantly decreased mitochondrial respiratory chain complex I activity in muscle, who died at 7 months of age having made minimal developmental progress. Biallelic predicted truncating P4HTM variants were identified following trio whole-genome sequencing, consistent with a diagnosis of hypotonia, hypoventilation, intellectual disability, dysautonomia, epilepsy and eye abnormalities (HIDEA) syndrome. Very few patients with HIDEA syndrome have been reported previously and mitochondrial abnormalities were observed in three of four previous cases who had a muscle biopsy, suggesting the possibility that HIDEA syndrome represents a primary mitochondrial disorder. P4HTM encodes a transmembrane prolyl 4-hydroxylase with putative targets including hypoxia inducible factors, RNA polymerase II and activating transcription factor 4, which has been implicated in the integrated stress response observed in cell and animal models of mitochondrial disease, and may explain the mitochondrial dysfunction observed in HIDEA syndrome.
Altered expression of genes controlling metabolism characterizes the tissue response to immune injury in lupus
Authors: Kingsmore Kathryn M. , Bachali Prathyusha , Catalina Michelle D. , Daamen Andrea R. , Heuer Sarah E. , Robl Robert D. , Grammer Amrie C. , Lipsky Peter E. 
Published: July 2021

AbstractTo compare lupus pathogenesis in disparate tissues, we analyzed gene expression profiles of human discoid lupus erythematosus (DLE) and lupus nephritis (LN). We found common increases in myeloid cell-defining gene sets and decreases in genes controlling glucose and lipid metabolism in lupus-affected skin and kidney. Regression models in DLE indicated increased glycolysis was correlated with keratinocyte, endothelial, and inflammatory cell transcripts, and decreased tricarboxylic (TCA) cycle genes were correlated with the keratinocyte signature. In LN, regression models demonstrated decreased glycolysis and TCA cycle genes were correlated with increased endothelial or decreased kidney cell transcripts, respectively. Less severe glomerular LN exhibited similar alterations in metabolism and tissue cell transcripts before monocyte/myeloid cell infiltration in some patients. Additionally, changes to mitochondrial and peroxisomal transcripts were associated with specific cells rather than global signal changes. Examination of murine LN gene expression demonstrated metabolic changes were not driven by acute exposure to type I interferon and could be restored after immunosuppression. Finally, expression of HAVCR1, a tubule damage marker, was negatively correlated with the TCA cycle signature in LN models. These results indicate that altered metabolic dysfunction is a common, reversible change in lupus-affected tissues and appears to reflect damage downstream of immunologic processes.
Electrostatic model of dielectric elastomer generator based on finite element
Authors: Cao Jianbo , Lu Gangqiang , Shiju E. , Gao Zhao , Zhao Tianfeng , Xia Wenjun 
Published: July 2021

AbstractWhen dielectric elastomer materials are used for power generation, bias voltage is applied at both ends of dielectric elastomer film, and there are equal amounts of heterogeneous charges on both sides of the film, so Maxwell electrostatic force is always coupled in the process of power generation. In order to investigate the distribution of Maxwell stress in dielectric elastomer material under electric field, the electrostatic model of dielectric elastomer generator is established in COMSOL finite element simulation software environment in this paper. The distribution of electrostatic force is studied from two aspects of theoretical derivation and simulation, and the magnitude and direction of electrostatic force are determined. The simulation results show that the Maxwell electrostatic force can be equivalent to the tensile force along the film plane and the extrusion force perpendicular to the plane, and they are the same.
Cyclic stretching-induced epithelial cell reorientation is driven by microtubule-modulated transverse extension during the relaxation phase
Authors: Lien Jui-Chien , Wang Yu-li 
Published: July 2021

AbstractMany types of adherent cells are known to reorient upon uniaxial cyclic stretching perpendicularly to the direction of stretching to facilitate such important events as wound healing, angiogenesis, and morphogenesis. While this phenomenon has been documented for decades, the underlying mechanism remains poorly understood. Using an on-stage stretching device that allowed programmable stretching with synchronized imaging, we found that the reorientation of NRK epithelial cells took place primarily during the relaxation phase when cells underwent rapid global retraction followed by extension transverse to the direction of stretching. Inhibition of myosin II caused cells to orient along the direction of stretching, whereas disassembly of microtubules enhanced transverse reorientation. Our results indicate distinct roles of stretching and relaxation in cell reorientation and implicate a role of myosin II-dependent contraction via a microtubule-modulated mechanism. The importance of relaxation phase also explains the difference between the responses to cyclic and static stretching.
Root exudate chemical cues of an invasive plant modulate oviposition behavior and survivorship of a malaria mosquito vector
Authors: Milugo Trizah K. , Tchouassi David P. , Kavishe Reginald A. , Dinglasan Rhoel R. , Torto Baldwyn 
Published: July 2021

AbstractGravid female Anopheles gambiae mosquitoes identify suitable oviposition sites through a repertoire of cues, but the influence of allelochemicals, especially root phytochemicals in modulating this behavior and impacting subsequent progeny bionomics remains unexplored. We addressed these questions in the malaria vector Anopheles gambiae and its invasive host plant Parthenium hysterophorus. Using chemical analysis combined with laboratory behavioral assays, we demonstrate that a blend of terpenes, namely α-pinene, α-phellandrene, β-phellandrene, 3-carene and (E)-caryophyllene emitted from P. hysterophorus root exudate treated-water attracted gravid females. However, fewer eggs (55%) hatched in this treatment than in control water (66%). The sesquiterpene lactone parthenin, identified in both the natural aquatic habitat harboring P. hysterophorus and root exudate-treated water was found to be responsible for the ovicidal effect. Moreover, larvae exposed to parthenin developed 2 to 3 days earlier but survived 4 to 5 days longer as adults (median larval survival time = 9 days (all replicates);11 to 12 days as adults) than the non-exposed control (median larval survival time = 11 days (reps 1 & 2), 12 days (rep 3); 6 to 7 days as adults). These results improve our understanding of the risk and benefits of oviposition site selection by gravid An. gambiae females and the role root exudate allelochemicals could play on anopheline bionomics, with potential implications in malaria transmission.
Training-induced plasticity enables visualizing sounds with a visual-to-auditory conversion device
Authors: Pesnot Lerousseau Jacques , Arnold Gabriel , Auvray Malika 
Published: July 2021

AbstractSensory substitution devices aim at restoring visual functions by converting visual information into auditory or tactile stimuli. Although these devices show promise in the range of behavioral abilities they allow, the processes underlying their use remain underspecified. In particular, while an initial debate focused on the visual versus auditory or tactile nature of sensory substitution, since over a decade, the idea that it reflects a mixture of both has emerged. In order to investigate behaviorally the extent to which visual and auditory processes are involved, participants completed a Stroop-like crossmodal interference paradigm before and after being trained with a conversion device which translates visual images into sounds. In addition, participants' auditory abilities and their phenomenologies were measured. Our study revealed that, after training, when asked to identify sounds, processes shared with vision were involved, as participants’ performance in sound identification was influenced by the simultaneously presented visual distractors. In addition, participants’ performance during training and their associated phenomenology depended on their auditory abilities, revealing that processing finds its roots in the input sensory modality. Our results pave the way for improving the design and learning of these devices by taking into account inter-individual differences in auditory and visual perceptual strategies.
MiR-486-3p was downregulated at microRNA profiling of adrenals of multiple endocrine neoplasia type 1 mice, and inhibited human adrenocortical carcinoma cell lines
Authors: Li Su-Chen , Monazzam Azita , Razmara Masoud , Chu Xia , Stålberg Peter , Skogseid Britt 
Published: July 2021

AbstractAdrenocortical carcinoma is a rare aggressive disease commonly recurring regardless of radical surgery. Although data on genomic alterations in malignant tumors are accumulating, knowledge of molecular events of importance for initiation of adrenocortical transformation is scarce. In an attempt to recognize early molecular alterations, we used adrenals from young multiple endocrine neoplasia type 1 conventional knock-out mice (Men1+/−) closely mimicking the human MEN1 trait (i.e. transformation of pituitary, parathyroid, endocrine pancreatic, and adrenocortical cells). MicroRNA array and hierarchical clustering showed a distinct pattern. Twenty miRNAs were significantly upregulated and eleven were downregulated inMen1+/−compared to wild type littermates. The latter included the known suppressor miRNA miR-486-3p, which was chosen for transfection in human adrenocortical carcinoma cell lines H295R and SW13. Cell growth decreased in miR-486-3p overexpressing clones and levels of the predicted target gene fatty acid synthase (FASN) and its downstream product, palmitic acid, were lowered. In conclusion, heterozygous inactivation ofMen1in adrenals results in distinct miRNA profile regulating expression of genes with impact on tumorigenesis, e.g. transcription, nucleic acid and lipid metabolism. Low levels of miR-486-3p in the early stages of transformation may contribute to proliferation by increasing FASN and thus fatty acid production. FASN as a potentially druggable target for treatment of the devastating disease adrenocortical carcinoma warrants further studies.
Young children learn first impressions of faces through social referencing
Authors: Eggleston Adam , Geangu Elena , Tipper Steven P. , Cook Richard , Over Harriet 
Published: July 2021

AbstractPrevious research has demonstrated that the tendency to form first impressions from facial appearance emerges early in development. We examined whether social referencing is one route through which these consistent first impressions are acquired. In Study 1, we show that 5- to 7-year-old children are more likely to choose a target face previously associated with positive non-verbal signals as more trustworthy than a face previously associated with negative non-verbal signals. In Study 2, we show that children generalise this learning to novel faces who resemble those who have previously been the recipients of positive non-verbal behaviour. Taken together, these data show one means through which individuals within a community could acquire consistent, and potentially inaccurate, first impressions of others faces. In doing so, they highlight a route through which cultural transmission of first impressions can occur.
In vitro evidence for the involvement of H2S pathway in the effect of clodronate during inflammatory response
Authors: Montanaro Rosangela , D’Addona Alessio , Izzo Andrea , Ruosi Carlo , Brancaleone Vincenzo 
Published: July 2021

AbstractClodronate is a bisphosphonate agent commonly used as anti-osteoporotic drug. Throughout its use, additional anti-inflammatory and analgesic properties have been reported, although the benefits described in the literature could not solely relate to their inhibition of bone resorption. Thus, the purpose of our in vitro study is to investigate whether there are underlying mechanisms explaining the anti-inflammatory effect of clodronate and possibly involving hydrogen sulphide (H2S). Immortalised fibroblast-like synoviocyte cells (K4IM) were cultured and treated with clodronate in presence of TNF-α. Clodronate significantly modulated iNOS expression elicited by TNF-α. Inflammatory markers induced by TNF-α, including IL-1, IL-6, MCP-1 and RANTES, were also suppressed following administration of clodronate. Furthermore, the reduction in enzymatic biosynthesis of CSE-derived H2S, together with the reduction in CSE expression associated with TNF-α treatment, was reverted by clodronate, thus rescuing endogenous H2S pathway activity. Clodronate displays antinflammatory properties through the modulation of H2S pathway and cytokines levels, thus assuring the control of the inflammatory state. Although further investigation is needed to stress out how clodronate exerts its control on H2S pathway, here we showed for the first the involvement of H2S in the additive beneficial effects observed following clodronate therapy.
Efficient gene transfer into zebra finch germline-competent stem cells using an adenoviral vector system
Authors: Jung Kyung Min , Kim Young Min , Kim Jin Lee , Han Jae Yong 
Published: July 2021

AbstractZebra finch is a representative animal model for studying the molecular basis of human disorders of vocal development and communication. Accordingly, various functional studies of zebra finch have knocked down or introduced foreign genes in vivo; however, their germline transmission efficiency is remarkably low. The primordial germ cell (PGC)-mediated method is preferred for avian transgenic studies; however, use of this method is restricted in zebra finch due to the lack of an efficient gene transfer method for the germline. To target primary germ cells that are difficult to transfect and manipulate, an adenovirus-mediated gene transfer system with high efficiency in a wide range of cell types may be useful. Here, we isolated and characterized two types of primary germline-competent stem cells, PGCs and spermatogonial stem cells (SSCs), from embryonic and adult reproductive tissues of zebra finch and demonstrated that genes were most efficiently transferred into these cells using an adenovirus-mediated system. This system was successfully used to generate gene-edited PGCs in vitro. These results are expected to improve transgenic zebra finch production.