bluuebunny/crossref_metadata_2025_split huggingface dataset:
Sustainable intensification for a larger global rice bowl
Authors: Yuan Shen , Linquist Bruce A. , Wilson Lloyd T. , Cassman Kenneth G. , Stuart Alexander M. , Pede Valerien , Miro Berta , Saito Kazuki , Agustiani Nurwulan , Aristya Vina Eka , Krisnadi Leonardus Y. , Zanon Alencar Junior , Heinemann Alexandre Bryan , Carracelas Gonzalo , Subash Nataraja , Brahmanand Pothula S. , Li Tao , Peng Shaobing , Grassini Patricio 
Published: December 2021

AbstractFuture rice systems must produce more grain while minimizing the negative environmental impacts. A key question is how to orient agricultural research & development (R&D) programs at national to global scales to maximize the return on investment. Here we assess yield gap and resource-use efficiency (including water, pesticides, nitrogen, labor, energy, and associated global warming potential) across 32 rice cropping systems covering half of global rice harvested area. We show that achieving high yields and high resource-use efficiencies are not conflicting goals. Most cropping systems have room for increasing yield, resource-use efficiency, or both. In aggregate, current total rice production could be increased by 32%, and excess nitrogen almost eliminated, by focusing on a relatively small number of cropping systems with either large yield gaps or poor resource-use efficiencies. This study provides essential strategic insight on yield gap and resource-use efficiency for prioritizing national and global agricultural R&D investments to ensure adequate rice supply while minimizing negative environmental impact in coming decades.
Krill and salp faecal pellets contribute equally to the carbon flux at the Antarctic Peninsula
Authors: Pauli Nora-Charlotte , Flintrop Clara M. , Konrad Christian , Pakhomov Evgeny A. , Swoboda Steffen , Koch Florian , Wang Xin-Liang , Zhang Ji-Chang , Brierley Andrew S. , Bernasconi Matteo , Meyer Bettina , Iversen Morten H. 
Published: December 2021

AbstractKrill and salps are important for carbon flux in the Southern Ocean, but the extent of their contribution and the consequences of shifts in dominance from krill to salps remain unclear. We present a direct comparison of the contribution of krill and salp faecal pellets (FP) to vertical carbon flux at the Antarctic Peninsula using a combination of sediment traps, FP production, carbon content, microbial degradation, and krill and salp abundances. Salps produce 4-fold more FP carbon than krill, but the FP from both species contribute equally to the carbon flux at 300 m, accounting for 75% of total carbon. Krill FP are exported to 72% to 300 m, while 80% of salp FP are retained in the mixed layer due to fragmentation. Thus, declining krill abundances could lead to decreased carbon flux, indicating that the Antarctic Peninsula could become a less efficient carbon sink for anthropogenic CO2 in future.
Nanoparticle-assembled bioadhesive coacervate coating with prolonged gastrointestinal retention for inflammatory bowel disease therapy
Authors: Zhao Pengchao , Xia Xianfeng , Xu Xiayi , Leung Kevin Kai Chung , Rai Aliza , Deng Yingrui , Yang Boguang , Lai Huasheng , Peng Xin , Shi Peng , Zhang Honglu , Chiu Philip Wai Yan , Bian Liming 
Published: December 2021

AbstractA key challenge for the effective treatment of gastrointestinal diseases including inflammatory bowel disease is to develop an orally administered drug delivery system capable of prolonged retention in the gastrointestinal tract. Herein we report a bioadhesive liquid coacervate based on hydrogen bonding-driven nanoparticle assembly. Free from electrostatic interactions, our fluid nanoparticle-assembled coacervate demonstrates significant pH- and salt-independent structural stability and forms a physically adhesive coating on a large surface area of intestinal tract with an extended residence time of more than 2 days to mediate the sustained release of preloaded water-soluble small molecule drugs in vivo. The orally administered drug-laden nanoparticle-assembled coacervate significantly mitigates the symptoms of inflammatory bowel disease, restores the diversity of gut microbiota, reduces systemic drug exposure, and improves the therapeutic efficacy in a rat acute colitis model compared with the oral administration of the same amount of drug in solution form. We suggest that the nanoparticle-assembled coacervate provides a promising drug delivery platform for management and treatment of numerous gastrointestinal diseases where controlled drug release with extended residence time is desired.
Chemical hardness-driven interpretable machine learning approach for rapid search of photocatalysts
Authors: Kumar Ritesh , Singh Abhishek K. 
Published: December 2021

AbstractStrategies combining high-throughput (HT) and machine learning (ML) to accelerate the discovery of promising new materials have garnered immense attention in recent years. The knowledge of new guiding principles is usually scarce in such studies, essentially due to the ‘black-box’ nature of the ML models. Therefore, we devised an intuitive method of interpreting such opaque ML models through SHapley Additive exPlanations (SHAP) values and coupling them with the HT approach for finding efficient 2D water-splitting photocatalysts. We developed a new database of 3099 2D materials consisting of metals connected to six ligands in an octahedral geometry, termed as 2DO (octahedral 2D materials) database. The ML models were constructed using a combination of composition and chemical hardness-based features to gain insights into the thermodynamic and overall stabilities. Most importantly, it distinguished the target properties of the isocompositional 2DO materials differing in bond connectivities by combining the advantages of both elemental and structural features. The interpretable ML regression, classification, and data analysis lead to a new hypothesis that the highly stable 2DO materials follow the HSAB principle. The most stable 2DO materials were further screened based on suitable band gaps within the visible region and band alignments with respect to standard redox potentials using the GW method, resulting in 21 potential candidates. Moreover, HfSe2 and ZrSe2 were found to have high solar-to-hydrogen efficiencies reaching their theoretical limits. The proposed methodology will enable materials scientists and engineers to formulate predictive models, which will be accurate, physically interpretable, transferable, and computationally tractable.
Barium hexaferrite/muscovite heteroepitaxy with mechanically robust perpendicular magnetic anisotropy
Authors: Ke Wei-En , Shao Pao-Wen , Kuo Chang-Yang , Song Haili , Huang Rong , Yagi Naoki , Kimura Tsuyoshi , Bitla Yugandhar , Chang Chun-Fu , Chu Ying-Hao 
Published: December 2021

AbstractRecent advances in the design and development of magnetic storage devices have led to an enormous interest in materials with perpendicular magnetic anisotropy (PMA) property. The past decade has witnessed a huge growth in the development of flexible devices such as displays, circuit boards, batteries, memories, etc. since they have gradually made an impact on people’s lives. Thus, the integration of PMA materials with flexible substrates can benefit the development of flexible magnetic devices. In this study, we developed a heteroepitaxy of BaFe12O19 (BaM)/muscovite which displays both mechanical flexibility and PMA property. The particular PMA property was characterized by vibrating sample magnetometer, magnetic force microscopy, and x-ray absorption spectroscopy. To quantify the PMA property of the system, the intrinsic magnetic anisotropy energy density of ~2.83 Merg cm−3 was obtained. Furthermore, the heterostructure exhibits robust PMA property against severe mechanical bending. The findings of this study on the BaM/muscovite heteroepitaxy have several important implications for research in next-generation flexible magnetic recording devices and actuators.
Validity of urges to smoke measures in predicting smoking relapse during treatment in primary care
Authors: Kotz Daniel , van Rossem Carolien , Viechtbauer Wolfgang , Spigt Mark , van Schayck Onno C. P. 
Published: December 2021

AbstractIn the context of smoking cessation treatment in primary care, identifying patients at the highest risk of relapse is relevant. We explored data from a primary care trial to assess the validity of two simple urges to smoke questions in predicting long-term relapse and their diagnostic value. Of 295 patients who received behavioural support and varenicline, 180 were abstinent at week 9. In this subgroup, we measured time spent with urges to smoke (TSU) and strength of urges to smoke (SUT; both scales 1 to 6 = highest). We used separate regression models with TSU or SUT as predictor and relapse from week 9–26 or week 9–52 as an outcome. We also calculated the sensitivity (SP), specificity and positive predictive values (PPV) of TSU and SUT in correctly identifying patients who relapsed at follow-up. The adjusted odds ratios (aOR) for predicting relapse from week 9–26 were 1.74 per point increase (95% CI = 1.05–2.89) for TSU and 1.59 (95% CI = 1.11–2.28) for SUT. The aORs for predicting relapse from week 9–52 were 2.41 (95% CI = 1.33–4.37) and 1.71 (95% CI = 1.14–2.56), respectively. Applying a cut-point of ≥3 on TSU resulted in SP = 97.1 and PPV = 70.0 in week 9–26, and SP = 98.8 and PPV = 90.0 in week 9–52. Applying a cut-point of ≥4 on SUT resulted in SP = 99.0 and PPV = 85.7 in week 9–26, and SP = 98.8 and PPV = 85.7 in week 9–52. Both TSU and SUT were valid predictors of long-term relapse in patients under smoking cessation treatment in primary care. These simple questions may be useful to implement in primary care.Trial registration: Dutch Trial Register (NTR3067).
Crosstalk between Plk1, p53, cell cycle, and G2/M DNA damage checkpoint regulation in cancer: computational modeling and analysis
Authors: Jung Yongwoon , Kraikivski Pavel , Shafiekhani Sajad , Terhune Scott S. , Dash Ranjan K. 
Published: December 2021

AbstractDifferent cancer cell lines can have varying responses to the same perturbations or stressful conditions. Cancer cells that have DNA damage checkpoint-related mutations are often more sensitive to gene perturbations including altered Plk1 and p53 activities than cancer cells without these mutations. The perturbations often induce a cell cycle arrest in the former cancer, whereas they only delay the cell cycle progression in the latter cancer. To study crosstalk between Plk1, p53, and G2/M DNA damage checkpoint leading to differential cell cycle regulations, we developed a computational model by extending our recently developed model of mitotic cell cycle and including these key interactions. We have used the model to analyze the cancer cell cycle progression under various gene perturbations including Plk1-depletion conditions. We also analyzed mutations and perturbations in approximately 1800 different cell lines available in the Cancer Dependency Map and grouped lines by genes that are represented in our model. Our model successfully explained phenotypes of various cancer cell lines under different gene perturbations. Several sensitivity analysis approaches were used to identify the range of key parameter values that lead to the cell cycle arrest in cancer cells. Our resulting model can be used to predict the effect of potential treatments targeting key mitotic and DNA damage checkpoint regulators on cell cycle progression of different types of cancer cells.
Sex-specific effects of aging on humoral immune responses to repeated influenza vaccination in older adults
Authors: Shapiro Janna R. , Li Huifen , Morgan Rosemary , Chen Yiyin , Kuo Helen , Ning Xiaoxuan , Shea Patrick , Wu Cunjin , Merport Katherine , Saldanha Rayna , Liu Suifeng , Abrams Engle , Chen Yan , Kelly Denise C. , Sheridan-Malone Eileen , Wang Lan , Zeger Scott L. , Klein Sabra L. , Leng Sean X. 
Published: December 2021

AbstractOlder adults (≥65 years of age) bear a significant burden of severe disease and mortality associated with influenza, despite relatively high annual vaccination coverage and substantial pre-existing immunity to influenza. To test the hypothesis that host factors, including age and sex, play a role in determining the effect of repeated vaccination and levels of pre-existing humoral immunity to influenza, we evaluated pre- and post-vaccination strain-specific hemagglutination inhibition (HAI) titers in adults over 75 years of age who received a high-dose influenza vaccine in at least four out of six influenza seasons. Pre-vaccination titers, rather than host factors and repeated vaccination were significantly associated with post-vaccination HAI titer outcomes, and displayed an age-by-sex interaction. Pre-vaccination titers to H1N1 remained constant with age. Titers to H3N2 and influenza B viruses decreased substantially with age in males, whereas titers in females remained constant with age. Our findings highlight the importance of pre-existing immunity in this highly vaccinated older adult population and suggest that older males are particularly vulnerable to reduced pre-existing humoral immunity to influenza.
Enhanced isolation of influenza viruses in qualified cells improves the probability of well-matched vaccines
Authors: Peck Heidi , Laurie Karen L. , Rockman Steve , Leung Vivian , Lau Hilda , Soppe Sally , Rynehart Cleve , Baas Chantal , Trusheim Heidi , Barr Ian G. 
Published: December 2021

AbstractInfluenza vaccines are utilised to combat seasonal and pandemic influenza. The key to influenza vaccination currently is the availability of candidate vaccine viruses (CVVs). Ideally, CVVs reflect the antigenic characteristics of the circulating virus, which may vary depending upon the isolation method. For traditional inactivated egg-based vaccines, CVVs are isolated in embryonated chicken eggs, while for cell-culture production, CVV’s are isolated in either embryonated eggs or qualified cell lines. We compared isolation rates, growth characteristics, genetic stability and antigenicity of cell and egg CVV’s derived from the same influenza-positive human clinical respiratory samples collected from 2008–2020. Influenza virus isolation rates in MDCK33016PF cells were twice that of eggs and mutations in the HA protein were common in egg CVVs but rare in cell CVVs. These results indicate that fully cell-based influenza vaccines will improve the choice, match and potentially the effectiveness, of seasonal influenza vaccines compared to egg-based vaccines.
The size and shape of parasitic larvae of naiads (Unionidae) are not dependent on female size
Authors: Ćmiel Adam M. , Dołęga Jacek , Aldridge David C. , Lipińska Anna , Tang Feng , Zając Katarzyna , Lopes-Lima Manuel , Zając Tadeusz 
Published: December 2021

AbstractThe naiads, large freshwater mussels (Unionida), have very long life spans, are large-bodied, and produce thousands to millions of larvae (glochidia) which typically must attach to host fish tissues to metamorphose into a juvenile mussel. Glochidia develop within a female's marsupial gill demibranch, thus their number is restricted by female size. However, larger mussels acquire more energy, which could be invested in either larger-sized glochidia, in a more glochidia, or a combination of both. The high level of host specialization seen in many naiads may constrain glochidial size and shape around a narrow optimum, while naiads that use a wide range of host fishes may be predicted to possess greater plasticity in glochidial morphology. In this paper, we investigated the relationship between maternal body size and progeny body size and shape, aided by modern digital microscopy. We analyzed the between- and within- species variation of glochidia size and shape relative to female size in four widespread species of European naiads: Anodonta anatina, Anodonta cygnea, Unio crassus and Unio tumidus. Whereas the total reproductive output is collinear with female body size, substantial differences between species in glochidia size were found within genus Anodonta, but not genus Unio where glochidial size is remarkably consistent. The glochidial shape, however, differed within both Unio and Anodonta. We interpret this constant within-species glochidial size in Unio as reflecting a constraint imposed by the likelihood of successful transmission onto and off from a narrow range of hosts, whereas their shape seems to be less constrained. The Anodonta species, inhabiting a wide spectrum of habitats and using more than twice the number of fish hosts than Unio spp., have larger glochidia with greater variation in size and shape. Our results suggest that measures of glochidial variability may also serve as an indicator of host specificity in other naiads.
Mechanistic science in cardiovascular-oncology: the way forward to maximise anti-cancer drug effects and minimise cardiovascular toxicity
Authors: Lang Ninian N. , Touyz Rhian M. 
Published: December 2021

Abstract
Dramatic improvements in cancer survival have arisen because of the rapid development of novel anti-cancer therapies. The potential for cardiovascular toxicity associated with these drugs often reflects overlap between pathogenic cancer mechanisms and physiological pathways required for normal cardiovascular function. Clinical Science has, therefore, compiled a themed collection on Cardiovascular-Oncology. This collection examines the intersection between cancer treatments and their potentially harmful cardiovascular effects. By defining the mechanisms underlying unwanted cardiovascular effects of anti-cancer therapies, cardioprotective strategies can be developed. Only by doing so, will patients be able to achieve optimal cancer treatment at the minimum cost to cardiovascular health.
NIR jets from a clustered region of massive star formation
Authors: Costa Silva A. R. , Fedriani R. , Tan J. C. , Caratti o Garatti A. , Ramsay S. , Rosero V. , Cosentino G. , Gorai P. , Leurini S. 
Published: December 2021

Context. Massive stars play crucial roles in determining the physical and chemical evolution of galaxies. However, they form deeply embedded in their parental clouds, making it challenging to directly observe these stars and their immediate environments. It is known that accretion and ejection processes are intrinsically related, thus observing the massive protostellar outflows can provide crucial information about the processes governing massive star formation very close to the central engine.
Aims. We aim to probe the IRAS 18264-1152 (also known as G19.88-0.53) high-mass star-forming complex in the near infrared (NIR) through its molecular hydrogen (H2) jets to analyse the morphology and composition of the line emitting regions and to compare with other outflow tracers.
Methods. We observed the H2 NIR jets via K-band (1.9–2.5 μm) observations obtained with the integral field units VLT/SINFONI and VLT/KMOS. VLT/SINFONI provides the highest NIR angular resolution achieved so far for the central region of IRAS 18264-1152 (~0.2′′). We compared the geometry of the NIR outflows with that of the associated molecular outflow, probed by CO (2-1) emission mapped with the Submillimeter Array.
Results. We identify nine point sources in the SINFONI and KMOS fields of view. Four of these display a rising continuum in the K-band and are Brγ emitters, revealing that they are young, potentially jet-driving sources. The spectro-imaging analysis focusses on the H2 jets, for which we derived visual extinction, temperature, column density, area, and mass. The intensity, velocity, and excitation maps based on H2 emission strongly support the existence of a protostellar cluster in this region, with at least two (and up to four) different large-scale outflows, found through the NIR and radio observations. We compare our results with those found in the literature and find good agreement in the outflow morphology. This multi-wavelength comparison also allows us to derive a stellar density of ~4000 stars pc−3.
Conclusions. Our study reveals the presence of several outflows driven by young sources from a forming cluster of young, massive stars, demonstrating the utility of such NIR observations for characterising massive star-forming regions. Moreover, the derived stellar number density together with the geometry of the outflows suggest that stars can form in a relatively ordered manner in this cluster.
The Limitations of FDA Criteria: Inconsistencies with Clinical Practice, Findings, and Adult Criteria as a Barrier to Pediatric Implantation
Authors: Park Lisa R. , Gagnon Erika B. , Brown Kevin D. 
Published: December 2021

AbstractChildren require greater access to sound than adults as they are learning to communicate using hearing and spoken language. Yet when it comes to cochlear implant candidacy, currently approved Food and Drug Administration (FDA) criteria for adults are much less restrictive than those for children, allowing for greater levels of residual hearing and aided speech recognition in adults. Cochlear implant guidelines for children have changed very little in the 30 years since cochlear implants have been approved for pediatrics, and this lack of change has proven to be a barrier to implantation. Using evidence-based practice, centers have been providing off-label implantation for children who fall outside of current FDA criteria, including children with more residual hearing, children with single-side deafness younger than 5 years, and infants with bilateral profound loss younger than 9 months. The purpose of this article is to outline how these restrictions impede access to implants for children and describe the evidence supporting cochlear implantation in children who fall outside of current criteria.
The Importance of Access to Bilateral Hearing through Cochlear Implants in Children
Authors: Gordon Karen A. , Papsin Blake C. , Papaioannou Vicky , Cushing Sharon L. 
Published: December 2021

AbstractChildren with hearing loss require early access to sound in both ears to support their development. In this article, we describe barriers to providing bilateral hearing and developmental consequences of delays during early sensitive periods. Barriers include late identification of hearing loss in one or both ears and delayed access to intervention with hearing devices such as cochlear implants. Effects of delayed bilateral input on the auditory pathways and brain are discussed as well as behavioral effects on speech perception and other developmental outcomes including language and academics. Evidence for these effects has supported an evolution in cochlear implant candidacy in children that was started with unilateral implantation in children with profound deafness bilaterally to bilateral implantation to implantation of children with asymmetric hearing loss including children with single-side deafness. Opportunities to enhance the developmental benefits of bilateral hearing in children with hearing loss are also discussed including efforts to improve binaural/spatial hearing and consideration of concurrent vestibular deficits which are common in children with hearing loss.