bluuebunny/crossref_metadata_2025_split huggingface dataset:
Impact of vaginal douching products on vaginal Lactobacillus, Escherichia coli and epithelial immune responses
Authors: Hesham Helai , Mitchell Alissa J. , Bergerat Agnes , Hung Kristin , Mitchell Caroline M. 
Published: November 2021

AbstractWe compared the effect of commercial vaginal douching products on Lactobacillus crispatus, L. jensenii, L. gasseri, L. iners, E. coli, and immortalized vaginal epithelial cells (VK2). All studied douching products (vinegar, iodine and baking soda based) induced epithelial cell death, and all inhibited growth of E. coli. Co-culture of vaginal epithelial cells with any of the lactobacilli immediately following exposure to douching products resulted in a trend to less human cell death. However, co-culture of epithelial cells with L. iners was associated with higher production of IL6 and IL8, and lower IL1RA regardless of presence or type of douching solution. Co-culture with L. crispatus or L. jensenii decreased IL6 production in the absence of douches, but increased IL6 production after exposure to vinegar. Douching products may be associated with epithelial disruption and inflammation, and may reduce the anti-inflammatory effects of beneficial lactobacilli.
Expression and purification of a native Thy1-single-chain variable fragment for use in molecular imaging
Authors: Jugniot Natacha , Bam Rakesh , Paulmurugan Ramasamy 
Published: November 2021

AbstractMolecular imaging using singlechain variable fragments (scFv) of antibodies targeting cancer specific antigens have been considered a non-immunogenic approach for early diagnosis in the clinic. Usually, production of proteins is performed within Escherichia coli. Recombinant proteins are either expressed in E. coli cytoplasm as insoluble inclusion bodies, that often need cumbersome denaturation and refolding processes, or secreted toward the periplasm as soluble proteins that highly reduce the overall yield. However, production of active scFvs in their native form, without any heterologous fusion, is required for clinical applications. In this study, we expressed an anti-thymocyte differentiation antigen-scFv (Thy1-scFv) as a fusion protein with a N-terminal sequence including 3 × hexa-histidines, as purification tags, together with a Trx-tag and a S-tag for enhanced-solubility. Our strategy allowed to recover ~ 35% of Thy1-scFv in the soluble cytoplasmic fraction. An enterokinase cleavage site in between Thy1-scFv and the upstream tags was used to regenerate the protein with 97.7 ± 2.3% purity without any tags. Thy1-scFv showed functionality towards its target on flow cytometry assays. Finally, in vivo molecular imaging using Thy1-scFv conjugated to an ultrasound contrast agent (MBThy1-scFv) demonstrated signal enhancement on a transgenic pancreatic ductal adenocarcinoma (PDAC) mouse model (3.1 ± 1.2 a.u.) compared to non-targeted control (0.4 ± 0.4 a.u.) suggesting potential for PDAC early diagnosis. Overall, our strategy facilitates the expression and purification of Thy1-scFv while introducing its ability for diagnostic molecular imaging of pancreatic cancer. The presented methodology could be expanded to other important eukaryotic proteins for various applications, including but not limited to molecular imaging.
Regulation of PP2A, PP4, and PP6 holoenzyme assembly by carboxyl-terminal methylation
Authors: Lyons Scott P. , Greiner Elora C. , Cressey Lauren E. , Adamo Mark E. , Kettenbach Arminja N. 
Published: November 2021

AbstractThe family of Phosphoprotein Phosphatases (PPPs) is responsible for most cellular serine and threonine dephosphorylation. PPPs achieve substrate specificity and selectivity by forming multimeric holoenzymes. PPP holoenzyme assembly is tightly controlled, and changes in the cellular repertoire of PPPs are linked to human disease, including cancer and neurodegeneration. For PP2A, PP4, and PP6, holoenzyme formation is in part regulated by carboxyl (C)-terminal methyl-esterification (often referred to as “methylation”). Here, we use mass spectrometry-based proteomics, methylation-ablating mutations, and genome editing to elucidate the role of C-terminal methylation on PP2A, PP4, and PP6 holoenzyme assembly. We find that the catalytic subunits of PP2A, PP4, and PP6 are frequently methylated in cancer cells and that deletion of the C-terminal leucine faithfully recapitulates loss of methylation. We observe that loss of PP2A methylation consistently reduced B55, B56, and B72 regulatory subunit binding in cancer and non-transformed cell lines. However, Striatin subunit binding is only affected in non-transformed cells. For PP4, we find that PP4R1 and PP4R3β bind in a methylation-dependent manner. Intriguingly, loss of methylation does not affect PP6 holoenzymes. Our analyses demonstrate in an unbiased, comprehensive, and isoform-specific manner the crucial regulatory function of endogenous PPP methylation in transformed and non-transformed cell lines.
Theoretical explanation of rotational flow in the liquid-film motor
Authors: Najafi Ali , Shirsavar Reza 
Published: November 2021

AbstractA liquid film that is under the action of two electric forces, an external electric field parallel to the film and a lateral voltage difference applied to both edges of the film, exhibits a universal rotational flow. In this article, we revisit this phenomena by considering an idealized so-called liquid-film motor and provide a theoretical description of the underlying physical mechanism that is responsible for the rotation. Based on this theory, the external electric field induces a non-uniform distribution of freely moving charges on the film. Then the internal field that is mainly resulted from the lateral voltage difference, will exert forces on induced charges and subsequently will result the rotational flow. We show, how the fields contribute in developing a universal flow pattern.
Earthquake source characterization by machine learning algorithms applied to acoustic signals
Authors: Gomez Bernabe , Kadri Usama 
Published: November 2021

AbstractUnderwater seismic events generate acoustic radiation (such as acoustic-gravity waves), that carries information about the source and can travel long distances before dissipating. Effective early warning, emergency response, and information dissemination for earthquakes and tsunamis require a rapid characterisation of the fault properties: geometry and dynamics. In this work, we analysed hydrophone recordings of 201 earthquakes, located in the Pacific and the Indian Ocean, by employing acoustic signal processing and classification methods. The analysis allows identifying the type of earthquake (i.e. slip type, magnitude) and provides near real-time estimation of the effective properties of the fault dynamics and geometry. The results were compared against values reported by the Harvard Global Centroid Moment Tensor catalog (gCMT), revealing statistical significance between the extracted acoustic properties used to feed machine learning algorithms and the predicted slip and magnitude values.
Ant nest architecture is shaped by local adaptation and plastic response to temperature
Authors: Sankovitz Madison , Purcell Jessica 
Published: November 2021

AbstractSocial insects are among the most abundant arthropods in terrestrial ecosystems, where they provide ecosystem services. The effect of subterranean activity of ants on soil is well-studied, yet little is known about nest architecture due to the difficulty of observing belowground patterns. Furthermore, many species’ ranges span environmental gradients, and their nest architecture is likely shaped by the climatic and landscape features of their specific habitats. We investigated the effects of two temperature treatments on the shape and size of nests built by Formica podzolica ants collected from high and low elevations in the Colorado Rocky Mountains in a full factorial experiment. Ants nested in experimental chambers with soil surface temperatures matching the local temperatures of sample sites. We observed a plastic response of nest architecture to conditions experienced during excavation; workers experiencing a high temperature excavated deeper nests than those experiencing a cooler temperature. Further, we found evidence of local adaptation to temperature, with a significant interaction effect of natal elevation and temperature treatment on nest size and complexity. Specifically, workers from high elevation sites built larger nests with more tunnels when placed in the cool surface temperature treatment, and workers from low elevation sites exhibited the opposite pattern. Our results suggest that subterranean ant nest architecture is shaped by a combination of plastic and locally adapted building behaviors; we suggest that the flexibility of this ‘extended phenotype’ likely contributes to the widespread success of ants.
Additive and interaction effects of working memory and motor sequence training on brain functional connectivity
Authors: Zuber Priska , Gaetano Laura , Griffa Alessandra , Huerbin Manuel , Pedullà Ludovico , Bonzano Laura , Altermatt Anna , Tsagkas Charidimos , Parmar Katrin , Hagmann Patric , Wuerfel Jens , Kappos Ludwig , Sprenger Till , Sporns Olaf , Magon Stefano 
Published: November 2021

AbstractAlthough shared behavioral and neural mechanisms between working memory (WM) and motor sequence learning (MSL) have been suggested, the additive and interactive effects of training have not been studied. This study aimed at investigating changes in brain functional connectivity (FC) induced by sequential (WM + MSL and MSL + WM) and combined (WM × MSL) training programs. 54 healthy subjects (27 women; mean age: 30.2 ± 8.6 years) allocated to three training groups underwent twenty-four 40-min training sessions over 6 weeks and four cognitive assessments including functional MRI. A double-baseline approach was applied to account for practice effects. Test performances were compared using linear mixed-effects models and t-tests. Resting state fMRI data were analysed using FSL. Processing speed, verbal WM and manual dexterity increased following training in all groups. MSL + WM training led to additive effects in processing speed and verbal WM. Increased FC was found after training in a network including the right angular gyrus, left superior temporal sulcus, right superior parietal gyrus, bilateral middle temporal gyri and left precentral gyrus. No difference in FC was found between double baselines. Results indicate distinct patterns of resting state FC modulation related to sequential and combined WM and MSL training suggesting a relevance of the order of training performance. These observations could provide new insight for the planning of effective training/rehabilitation.
The impact of bacterial diversity on resistance to biocides in oilfields
Authors: Pereira Gabriela Feix , Pilz-Junior Harry Luiz , Corção Gertrudes 
Published: November 2021

AbstractExtreme conditions and the availability of determinate substrates in oil fields promote the growth of a specific microbiome. Sulfate-reducing bacteria (SRB) and acid-producing bacteria (APB) are usually found in these places and can harm important processes due to increases in corrosion rates, biofouling and reservoir biosouring. Biocides such as glutaraldehyde, dibromo-nitrilopropionamide (DBNPA), tetrakis (hydroxymethyl) phosphonium sulfate (THPS) and alkyl dimethyl benzyl ammonium chloride (ADBAC) are commonly used in oil fields to mitigate uncontrolled microbial growth. The aim of this work was to evaluate the differences among microbiome compositions and their resistance to standard biocides in four different Brazilian produced water samples, two from a Southeast Brazil offshore oil field and two from different Northeast Brazil onshore oil fields. Microbiome evaluations were carried out through 16S rRNA amplicon sequencing. To evaluate the biocidal resistance, the Minimum Inhibitory Concentration (MIC) of the standard biocides were analyzed using enriched consortia of SRB and APB from the produced water samples. The data showed important differences in terms of taxonomy but similar functional characterization, indicating the high diversity of the microbiomes. The APB and SRB consortia demonstrated varying resistance levels against the biocides. These results will help to customize biocidal treatments in oil fields.
Association between metabolic syndrome and incidence of ocular motor nerve palsy
Authors: Choi Daye Diana , Han Kyungdo , Oh Sei Yeul , Park Kyung-Ah 
Published: November 2021

AbstractTo assess the association between metabolic syndrome (MetS) and the development of third, fourth, and sixth cranial nerve palsy (CNP). Health checkup data of 4,067,842 individuals aged between 20 and 90 years provided by the National Health Insurance Service (NHIS) of South Korea between January 1, 2009, and December 31, 2009, were analyzed. Participants were followed up to December 31, 2017. Hazard ratio (HR) and 95% confidence interval (CI) of CNP were estimated using Cox proportional hazards regression analysis after adjusting for potential confounders. Model 1 included only incident CNP as a time-varying covariate. Model 2 included model 1 and individual’s age and sex. Model 3 included model 2, smoking status, alcohol consumption, and physical activity of individuals. We identified 5,835 incident CNP cases during the follow-up period (8.22 ± 0.94 years). Individuals with MetS (n = 851,004) showed an increased risk of CNP compared to individuals without MetS (n = 3,216,838) after adjustment (model 3: HR = 1.35, 95% CI 1.273–1.434). CNP incidence was positively correlated with the number of MetS components (log-rank p < 0.0001). The HR of CNP for males with MetS compared to males without MetS was higher than that of females with MetS compared to females without MetS (HR: 1.407, 95% CI 1.31–1.51 in men and HR: 1.259, 95% CI 1.13–1.40 in women, p for interaction = 0.0017). Our population-based large-scale cohort study suggests that MetS and its components might be risk factors for CNP development.
Real-world data analysis of patients with cancer of unknown primary
Authors: Kang Sora , Jeong Jae Ho , Yoon Shinkyo , Yoo Changhoon , Kim Kyu-pyo , Cho Hyungwoo , Ryoo Baek-Yeol , Jung Jinhong , Kim Jeong Eun 
Published: November 2021

AbstractCancer of unknown primary (CUP) is a heterogeneous malignancy in which the primary site of the tumor cannot be identified through standard work-up. The survival outcome of CUP is generally poor, and there is no consensus for treatment. Here, we comprehensively analyzed the real-world data of 218 patients with CUP (median age, 62 years [range, 19–91]; male, 62.3%). Next-generation sequencing was conducted in 22 (10%) patients, one of whom showed level 1 genetic alteration. Most (60.3%) patients were treated with empirical cytotoxic chemotherapy, and two patients received targeted therapy based on the NGS results. The median OS was 8.3 months (95% confidence interval [CI] 6.2–11.4), and the median progression-free survival of patients treated with chemotherapy was 4.4 months (95% CI 3.4–5.3). In multivariate Cox regression analysis, Eastern Cooperative Oncology Group performance status (ECOG PS) of 0 or 1 and localized disease were significantly associated with favorable survival outcomes. Collectively, we found that CUP patients had a poor prognosis after standard treatment, and those with localized disease who received local treatment and those with better PS treated with multiple lines of chemotherapy had better survival outcomes. Targeted therapies based on NGS results are expected to improve survival outcomes.
The implications of hyperoxia, type 1 diabetes and sex on cardiovascular physiology in mice
Authors: Bojkovic Katarina , Rodgers Jennifer Leigh , Vichare Riddhi , Nandi Asmita , Mansour Hussein , Saleem Faizan , Abidin Zain Ul , Vanthenapalli Sahit , Cheng Feng , Panguluri Siva Kumar 
Published: November 2021

AbstractOxygen supplementation, although a cornerstone of emergency and cardiovascular medicine, often results in hyperoxia, a condition characterized by excessive tissue oxygen which results in adverse cardiac remodeling and subsequent injurious effects to physiological function. Cardiac remodeling is further influenced by various risk factors, including pre-existing conditions and sex. Thus, the purpose of this experiment was to investigate cardiac remodeling in Type I Diabetic (Akita) mice subjected to hyperoxic treatment. Overall, we demonstrated that Akita mice experience distinct challenges from wild type (WT) mice. Specifically, Akita males at both normoxia and hyperoxia showed significant decreases in body and heart weights, prolonged PR, QRS, and QTc intervals, and reduced %EF and %FS at normoxia compared to WT controls. Moreover, Akita males largely resemble female mice (both WT and Akita) with regards to the parameters studied. Finally, statistical analysis revealed hyperoxia to have the greatest influence on cardiac pathophysiology, followed by sex, and finally genotype. Taken together, our data suggest that Type I diabetic patients may have distinct cardiac pathophysiology under hyperoxia compared to uncomplicated patients, with males being at high risk. These findings can be used to enhance provision of care in ICU patients with Type I diabetes as a comorbid condition.
Working hours are closely associated with depressive mood and suicidal ideation in Korean adults: a nationwide cross-sectional study
Authors: Han Sangsoo , Ko Yujin , Moon Ji Eun , Cho Young Soon 
Published: November 2021

AbstractLong working hours have been presumed to negatively influence health. However, evidence is lacking regarding any associations of working hours with depressive mood or suicidal ideation. We investigated the relationships of working hours with depressive mood and suicidal ideation in a representative sample of the Korean general population. We analyzed data collected by the Korea National Health and Nutrition Examination Surveys VI and VII (2013–2018). Depressive mood and suicidal ideation were identified through self-reporting. We divided participants into four groups according to weekly working hours: 30–40, 41–50, 51–60, and > 60 h/week. Sampling weights were applied to obtain estimates for the general Korean population. We analyzed 14,625 participants, of whom 5383 (36.8%), 4656 (31.8%), 2553 (17.5%), and 2033 (13.9%) worked 30–40, 41–50, 51–60, and > 60 h/week, respectively. In these groups, 3.6%, 4.4%, 5.2%, and 6.3% of the participants reported depressive mood, while 1.8%, 1.9%, 2.2%, and 3.6% reported suicidal ideation. In multiple regression analyses, compared with the 30–40 h/week group, the adjusted odds ratios of the 41–50, 51–60, and > 60 h/week groups for depressive mood were 1.35 (1.08–1.69), 1.5 (1.14–1.97), and 1.6 (1.19–2.14). A similar trend was evident for suicidal ideation (odds ratios 1.16 [0.82–1.63], 1.48 [0.99–2.21], and 2.29 [1.53–3.42]). Long working hours are significantly associated with depressive mood and suicidal ideation.
Gene expression analysis of Alcaligenes faecalis during induction of heterotrophic nitrification
Authors: Tsujino Shuhei , Dohra Hideo , Fujiwara Taketomo 
Published: November 2021

AbstractAlcaligenes faecalis is a heterotrophic nitrifying bacterium that oxidizes ammonia and generates nitrite and nitrate. When A. faecalis was cultivated in a medium containing pyruvate and ammonia as the sole carbon and nitrogen sources, respectively, high concentrations of nitrite accumulated in the medium whose carbon/nitrogen (C/N) ratio was lower than 10 during the exponential growth phase, while the accumulation was not observed in the medium whose C/N ratio was higher than 15. Comparative transcriptome analysis was performed using nitrifying and non-nitrifying cells of A. faecalis cultivated in media whose C/N ratios were 5 and 20, respectively, to evaluate the fluctuations of gene expression during induction of heterotrophic nitrification. Expression levels of genes involved in primary metabolism did not change significantly in the cells at the exponential growth phase under both conditions. We observed a significant increase in the expression levels of four gene clusters: pod cluster containing the gene encoding pyruvic oxime dioxygenase (POD), podh cluster containing the gene encoding a POD homolog (PODh), suf cluster involved in an iron-sulfur cluster biogenesis, and dnf cluster involved in a novel hydroxylamine oxidation pathway in the nitrifying cells. Our results provide valuable insight into the biochemical mechanism of heterotrophic nitrification.
The dynamics of decision-making and action during active sampling
Authors: Ozbagci Duygu , Moreno-Bote Ruben , Soto-Faraco Salvador 
Published: November 2021

AbstractEmbodied Cognition Theories (ECTs) of decision-making propose that the decision process pervades the execution of choice actions and manifests itself in these actions. Decision-making scenarios where actions not only express the choice but also help sample information can provide a valuable, ecologically relevant model for this framework. We present a study to address this paradigmatic situation in humans. Subjects categorized (2AFC task) a central object image, blurred to different extents, by moving a cursor toward the left or right of the display. Upward cursor movements reduced the image blur and could be used to sample information. Thus, actions for decision and actions for sampling were orthogonal to each other. We analyzed response trajectories to test whether information-sampling movements co-occurred with the ongoing decision process. Trajectories were bimodally distributed, with one kind being direct towards one response option (non-sampling), and the other kind containing an initial upward component before veering off towards an option (sampling). This implies that there was an initial decision at the early stage of a trial, whether to sample information or not. Importantly, in sampling trials trajectories were not purely upward, but rather had a significant horizontal deviation early on. This result suggests that movements to sample information exhibit an online interaction with the decision process, therefore supporting the prediction of the ECTs under ecologically relevant constrains.
A distributed adaptive protection scheme based on multi‐agent system for distribution networks in the presence of distributed generations
Authors: Ataei Mohammad Ali , Gitizadeh Mohsen 
Published: November 2021

AbstractDistribution networks are operated in different conditions and the traditional protection systems might not be proper for all available operation conditions by using directional overcurrent relaying. Besides, the presence of distributed generations makes the protection setting and coordination more complex, and may even make it impossible to access a reliable protection system. Therefore, a fully distributed adaptive protection scheme based on the multi‐agent systems is proposed to improve the reliability, selectivity and sensitivity of relays. It uses only numerical directional overcurrent relays with instantaneous characteristics as agents, so that only need to pick‐up settings and react quickly. All agents dynamically update their pickup value to increase the fault detection sensitivity, and make reliable and selective on‐board decisions for fault location and isolation. In addition, in order to achieve high sensitivity and mitigate miscoordination, using setting groups of relays, a novel adaptive backup protection scheme, which does not need complex computational coordination, is proposed. The proposed system is performed in the distributed manner to enhance efficiency and robustness against cyber‐attacks and one‐point failures. The proposed system is tested on the meshed IEEE 14‐bus system and radial IEEE 13‐bus system with distributed generations to evaluate its performance.