bluuebunny/crossref_metadata_2025_split huggingface dataset:
Genome ofSuperficieibacter maynardsmithii, a novel, antibiotic susceptible representative ofEnterobacteriaceae
Authors: Batisti Biffignandi Gherard , Gibbon Marjorie J , Corbella Marta , Thorpe Harry A , Merla Cristina , Castelli Michele , Kallonen Teemu , Pegrum Katie , Brisse Sylvain , Corander Jukka , Marone Piero , Feil Edward J , Sassera Davide 
Published: February 2021

AbstractDuring a citywide microbiological screening project in Pavia (Italy) a bacterial strain isolated from the surface of an Automated Teller Machine was classified as a Klebsiella sp. by MALDI-TOF spectrometry, and shown to be susceptible to the most antimicrobial classes by phenotypic testing. After Illumina genome sequencing and subsequent assembly, a high-quality draft genome was obtained (size = 5,051,593 bp, N50 = 615,571 bp, largest contig = 1,328,029 bp, N_contig = 17, GC content = 51.58%, coverage = 141.42), absence of antimicrobial resistance genes was confirmed, but the strain resulted to be highly divergent from all Klebsiella, and more related to other Enterobacteriaceae. The higher values of 16S rRNA identity were with members of the genera Citrobacter, Salmonella, and “Superficieibacter.” An ortholog-based phylogenomic analysis indicated a sister group relationship with “Superficieibacter electus,” in a distinct clade from other members of the Enterobacteriaceae family. In order to evaluate whether the novel genome represents a new species of “Superficiebacter,” average nucleotide identity (ANI) and Hadamard analysis were performed on a dataset of 78 Enterobacteriaceae. The novel genome showed an ANI of 87.51% with S. electus, which compared on identity values between other members of the family, clearly indicates that the genome represents a new species within the genus “Superficieibacter.” We propose for the new species the name “Superficieibacter maynardsmithii.”
Interaction of replication factor Sld3 and histone acetyl transferase Esa1 alleviates gene silencing and promotes the activation of late and dormant replication origins
Authors: Tanaka Seiji 
Published: February 2021

Abstract
DNA replication in eukaryotes is a multi-step process that consists of three main reactions: helicase loading (licensing), helicase activation (firing), and nascent DNA synthesis (elongation). Although the contributions of some chromatin regulatory factors in the licensing and elongation reaction have been determined, their functions in the firing reaction remain elusive. In the budding yeast Saccharomyces cerevisiae, Sld3, Sld7, and Cdc45 (3–7–45) are rate-limiting in the firing reaction and simultaneous overexpression of 3–7–45 causes untimely activation of late and dormant replication origins. Here, we found that 3–7–45 overexpression not only activated dormant origins in the silenced locus, HMLα, but also exerted an anti-silencing effect at this locus. For these, interaction between Sld3 and Esa1, a conserved histone acetyltransferase, was responsible. Moreover, the Sld3–Esa1 interaction was required for the untimely activation of late origins. These results reveal the Sld3–Esa1 interaction as a novel level of regulation in the firing reaction.
The impacts of cytoplasmic incompatibility factor (cifA and cifB) genetic variation on phenotypes
Authors: Shropshire J Dylan , Rosenberg Rachel , Bordenstein Seth R 
Published: February 2021

Abstract
Wolbachia are maternally transmitted, intracellular bacteria that can often selfishly spread through arthropod populations via cytoplasmic incompatibility (CI). CI manifests as embryonic death when males expressing prophage WO genes cifA and cifB mate with uninfected females or females harboring an incompatible Wolbachia strain. Females with a compatible cifA-expressing strain rescue CI. Thus, cif-mediated CI confers a relative fitness advantage to females transmitting Wolbachia. However, whether cif sequence variation underpins incompatibilities between Wolbachia strains and variation in CI penetrance remains unknown. Here, we engineer Drosophila melanogaster to transgenically express cognate and non-cognate cif homologs and assess their CI and rescue capability. Cognate expression revealed that cifA;B native to D. melanogaster causes strong CI, and cognate cifA;B homologs from two other Drosophila-associated Wolbachia cause weak transgenic CI, including the first demonstration of phylogenetic type 2 cifA;B CI. Intriguingly, non-cognate expression of cifA and cifB alleles from different strains revealed that cifA homologs generally contribute to strong transgenic CI and interchangeable rescue despite their evolutionary divergence, and cifB genetic divergence contributes to weak or no transgenic CI. Finally, we find that a type 1 cifA can rescue CI caused by a genetically divergent type 2 cifA;B in a manner consistent with unidirectional incompatibility. By genetically dissecting individual CI functions for type 1 and 2 cifA and cifB, this work illuminates new relationships between cif genotype and CI phenotype. We discuss the relevance of these findings to CI’s genetic basis, phenotypic variation patterns, and mechanism.
The Prospective Association Between Socioeconomic Status and Falls Among Community-Dwelling Older Men
Authors: Khalatbari-Soltani Saman , Stanaway Fiona , Sherrington Cathie , Blyth Fiona M , Naganathan Vasi , Handelsman David J , Seibel Markus J , Waite Louise M , Le Couteur David G , Cumming Robert G 
Published: February 2021

Abstract

Background
Socioeconomic status (SES) has been suggested as a risk factor for falls but the few prospective studies to test this have had mixed results. We evaluated the prospective association between SES and falls in the Concord Health and Ageing in Men Project (CHAMP).

Methods
CHAMP is a population-based prospective cohort study of men aged ≥70 years in Sydney, Australia. Incident falls were ascertained by triannual telephone calls for up to 4 years. SES was assessed with 4 indicators (education, occupation, source of income, home ownership) and cumulative SES score. We tested for interaction between SES indicators and country of birth and conducted stratified analyses.

Results
We evaluated 1624 men (mean age: 77.3 ± 5.4 years). During a mean ± SD follow-up of 42.6 ± 8.7 months, 766 (47%) participants reported ≥1 incident falls. In nonstratified analyses, there were no associations between SES indicators and falls. In stratified analyses, falls rates were higher among Australian-born men with less formal education (incidence rate ratio [IRR] 1.66, 95% confidence interval [CI] 1.16–2.37, compared with those with more education) and those with low occupational position (1.45; 1.09–1.93). However, among men born in non-main English-speaking countries the rate of falls was lower among those with low educational level and no associations were evident for occupational position.

Conclusions
Lower educational level and occupational position predicted a higher falls rate in Australian-born men; the opposite relationship was evident for educational level among migrants born in non-main English-speaking countries. Further studies should test these relationships in different populations and settings and evaluate targeted interventions.
Sediment mobilization by bottom trawls: a model approach applied to the Dutch North Sea beam trawl fishery
Authors: Rijnsdorp A D , Depestele J , Molenaar P , Eigaard O R , Ivanović A , O’Neill F G 
Published: February 2021

Abstract
Bottom trawls impact the seafloor and benthic ecosystem. One of the direct physical impacts is the mobilization of sediment in the wake of trawl gear components that are in contact with or are close to the seabed. The quantity of sediment mobilized is related to the hydrodynamic drag of the gear components and the type of sediment over which they are trawled. Here we present a methodology to estimate the sediment mobilization from hydrodynamic drag. The hydrodynamic drag of individual gear components is estimated using empirical measurements of similarly shaped objects, including cylinders, cubes, and nets. The method is applied to beam trawls used in the Dutch North Sea flatfish fishery and validated using measurements of beam trawl drag from the literature. Netting contributes most to the hydrodynamic drag of pulse trawls, while the tickler chains and chain mat comprise most of the hydrodynamic drag of conventional beam trawls. Taking account of the silt content of the areas trawled and the number of different beam trawl types used by the fleet, sediment mobilization is estimated as 9.2 and 5.3 kg m−2 for conventional 12 m beam and pulse trawls, respectively, and 4.2 and 4.3 kg m−2 for conventional 4.5 m beam and pulse trawls.
Automatic rational approximation and linearization of nonlinear eigenvalue problems
Authors: Lietaert Pieter , Meerbergen Karl , Pérez Javier , Vandereycken Bart 
Published: February 2021

Abstract
We present a method for solving nonlinear eigenvalue problems (NEPs) using rational approximation. The method uses the Antoulas–Anderson algorithm (AAA) of Nakatsukasa, Sète and Trefethen to approximate the NEP via a rational eigenvalue problem. A set-valued variant of the AAA algorithm is also presented for building low-degree rational approximations of NEPs with a large number of nonlinear functions. The rational approximation is embedded in the state-space representation of a rational polynomial by Su and Bai. This procedure perfectly fits the framework of the compact rational Krylov methods (CORK and TS-CORK), allowing solve large-scale NEPs to be efficiently solved. One advantage of our method, compared to related techniques such as NLEIGS and infinite Arnoldi, is that it automatically selects the poles and zeros of the rational approximations. Numerical examples show that the presented framework is competitive with NLEIGS and usually produces smaller linearizations with the same accuracy but with less effort for the user.
Review of Issues on Residual Malaria Transmission
Authors: Carnevale Pierre , Manguin Sylvie 
Published: February 2021

Abstract
Residual malaria transmission is the actual maintained inoculation of Plasmodium, in spite of a well-designed and implemented vector control programs, and is of great concern for malaria elimination. Residual malaria transmission occurs under several possible circumstances, among which the presence of exophilic vector species, such as Anopheles dirus, or indoor- and outdoor-biting vectors, such as Anopheles nili, or specific behavior, such as feeding on humans indoors, then resting or leaving the house the same night (such as Anopheles moucheti) or also changes in behavior induced by insecticides applied inside houses, such as the well-known deterrent effect of permethrin-treated nets or the irritant effect of DDT. The use of insecticides may change the composition of local Anopheles populations, such as A. arabiensis taking up the place of A. gambiae in Senegal, A. aquasalis replacing A. darlingi in Guyana, or A. harrisoni superseding A. minimus in Vietnam. The change in behavior, such as biting activity earlier than usually reported—for example, Anopheles funestus after a large-scale distribution of long-lasting insecticidal nets—or insecticide resistance, in particular the current spread of pyrethroid resistance, could hamper the efficacy of classic pyrethroid-treated long-lasting insecticidal nets and maintained transmission. These issues must be well documented in every situation to elaborate, implement, monitor, and evaluate tailored vector control programs, keeping in mind that they must be conceived as integrated programs with several well and appropriately coordinated approaches, combining entomological but also parasitological, clinical, and social methods and analyses. A successful integrated vector control program must then be designed to reduce transmission and incidence rates of malaria morbidity and overall mortality.
Psychosocial determinants of healthcare personnel’s willingness to carry real-time locating system tags during daily inpatient care in hospital managing COVID-19 patients: insights from a mixed-methods analysis
Authors: Guo Huiling , Huang Zhilian , Yeo Jeanette Y P , Wang Yinchu , Chow Angela 
Published: February 2021

Abstract

Objective
Real-time locating systems (RTLS) enable contact tracing and hand hygiene reminders, to improve hospital safety. Successful implementation requires healthcare personnel (HCP) to carry RTLS tags continuously. We assessed for determinants of HCP’s willingness to use RTLS tags during routine inpatient care, and evaluated concerns using mixed-methods analysis.

Materials and Methods
We conducted a cross-sectional study in the 330-bed purpose-built National Centre for Infectious Diseases in Singapore, from January 15 through February 4, 2020. The anonymous survey comprised 24 questions based on constructs from behavioral models and an open-ended question. Principal component analysis was performed to derive the latent factor structure applied in the multivariable logistic regression analysis. Concerns were analyzed using thematic analysis.

Results
Of 260 HCP (nurses [40.8%], ancillary and administrative staff [23.1%], allied health professionals [18.5%], and physicians [17.7%]), 75% were willing to use the RTLS tag. After adjusting for age, gender, healthcare professional group, and duration of practice, the acceptance of the use of the RTLS tag (adjusted OR 11.28 [95% CI 4.39–29.00], P &lt; .001) was highly associated with the willingness to use the RTLS tag. HCP who perceived the tag to be easy to use (adjusted OR 2.80 [95% CI 1.37–5.72], P = .005), were also more willing to use the tag. HCP were willing to carry the RTLS tag for the purpose of contact tracing despite privacy concerns.

Conclusion
More communications on the intentions and data protection standards of the RTLS, and accessory enhancements for HCP’s convenient and sustained use of the RTLS tag are crucial, to optimize RTLS’s usefulness during the COVID-19 pandemic.
Effects of dietary oregano essential oil supplementation on growth performance, intestinal antioxidative capacity, immunity, and intestinal microbiota in yellow-feathered chickens
Authors: Ruan Dong , Fan Qiuli , Fouad Ahmed Mohamed , Sun Yunyun , Huang Shengshu , Wu Aiji , Lin Chuxiao , Kuang Zhixiang , Zhang Chang , Jiang Shouqun 
Published: February 2021

Abstract
Essential oils are plant-derived aromatic volatile oils, and they contain bioactive compounds that have been shown to improve poultry nutrition. In this study, we investigated the effects of oregano essential oil (OEO) on intestinal antioxidative capacity, immunity, and gut microbiota of young yellow-feathered chickens. A total of nine hundred and sixty 1-d-old female Qingyuan partridge chickens were randomly allocated to four treatment groups with six replicates of 40 birds each, and the feeding trial was lasted for 30 d. The controls were fed on a basal diet without in-feed antibiotics; the birds in the antibiotic group were fed the basal diet supplemented with 20 mg/kg virginiamycin; the remaining birds were fed the basal diet containing 150 or 300 mg/kg OEO, respectively. Dietary supplementation with 150 or 300 mg/kg OEO increased average daily feed intake (P = 0.057) and average daily gain (P &lt; 0.05). The activities of glutathione peroxidase and total antioxidative capacity in plasma, jejuna, and ileal mucosa were increased by OEO supplementation (P &lt; 0.05), with a trend of lower jejunal content of malonaldehyde (P = 0.062). Moreover, dietary OEO increased the content of secretory immunoglobulin A (P = 0.078) and the relative expression of Claudin 1, Mucin 2, and Avain beta-defensin 1 in ileum (P &lt; 0.05). Sequencing data of 16S rRNA indicated that dietary OEO increased the relative abundance of Firmicutes phylum, and Clostridium and Lactobacillus genera, and decreasing that of Romboutsia. Functional analyses indicated that microbial amino sugar and nucleotide sugar metabolism, replication, and repair systems were higher in OEO groups than those of controls and antibiotic treatment. In conclusion, dietary supplementation with OEO enhanced growth performance, alleviated local oxidative stress in intestine, improved production of natural antibodies, and favorably modulated intestinal microbiota composition.
Radiologic and Pathologic Correlation for Lactating Adenomas
Authors: Cheung Hoiwan , Parker Elizabeth U , Kilgore Mark R , Scheel John R 
Published: February 2021

Abstract
Lactating adenomas are benign breast lesions that occur in pregnant, lactating, and postpartum women. These lesions have no associated malignant potential; their origin is disputed with no consensus on whether they represent hyperplastic or neoplastic processes. On ultrasound, lactating adenomas are classically described as solid, circumscribed, parallel masses with iso/hypoechoic internal echotexture and posterior enhancement. Histologically, lactating adenomas appear as circumscribed nodules of tightly packed lobular acini with extensive lactational change during pregnancy or the postpartum period. Masses in pregnant and lactating women with probably benign imaging characteristics—oval, circumscribed, parallel, iso/hypoechoic—can be managed with short interval follow-up (BI-RADS 3) rather than biopsy. However, lactating adenomas can also demonstrate characteristics that overlap with pregnancy-associated breast cancer, such as margins that are not circumscribed, prompting biopsy to exclude pregnancy-associated carcinoma. Breast imaging radiologists must be aware of the variable appearances of lactating adenomas to appropriately manage pregnant and lactating women presenting with palpable lumps.
Thermal Impacts of Apicultural Practice and Products on the Honey Bee Colony
Authors: Cook Daniel , Blackler Alethea , McGree James , Hauxwell Caroline 
Published: February 2021

Abstract
Hive design and apicultural processes have not been fundamentally changed since the design and commercialization of the Langstroth moveable frame hive in 1854. Colonies of Apis mellifera Linnaeus (Hymentoptera: Apidae) (the honey bee) maintain a brood nest temperature within the narrow range of 34.5–35.5°C, critical for brood development. Apis mellifera invest considerable energy to maintain hive homeostasis through behavioral modification of the hive environment. Human honey-harvesting processes and removal of the honey-filled comb (a source of thermal mass) have a detrimental impact on hive temperature that requires an increased investment of energy to rectify. This additional energy demand on the bees is a form of stress to the colony and diverts workers away from other essential tasks to that of environmental management. We investigated the thermal energy loss resulting from the removal and extraction of honey, the rate of thermal loss of an Australian standard Langstroth 10 frame hive, and the effect of honey and wax as a thermal mass in unoccupied bee hive. The results demonstrate that considerable energy expenditure would be required to rectify the hive thermal environment after honey harvesting or honeycomb frame addition. Honey provides thermal mass in the beehive, acting as a thermal buffer to external temperature change, which may mediate part of the thermal losses from the simplistic design of the Langstroth hive. Identification of these impacts in current apicultural practice and hive design allows for the improvement in the design of beehives and associated practices. These improvements may reduce stress to the bee colony, increasing colony efficiency for pollination and nectar foraging.
The Use of Multiple Unmanned Aircraft Systems as a Swarm to Release Sterile Mexican Fruit Fly (Diptera: Tephritidae) Into South Texas Citrus Groves
Authors: Moses-Gonzales Nathan , Conway Hugh , Krompetz Dustin , Rodriguez Roberto , Adams Christopher G , Baez Ignacio , Milam Michael 
Published: February 2021

Abstract
Mexican fruit fly Anastrepha ludens (Loew) (Diptera: Tephritidae) is a key economic pest of citrus and represents a quarantine issue along the United States and Mexico Border. In order to respond to this threat, the United States Department of Agriculture produces approximately 175 million sterile Mexican fruit fly pupae per week and releases approximately 150 million adult flies per week via conventional fixed wing aircraft. Unmanned aircraft systems (UAS) offer a novel means of releasing sterile insects aerially, can be deployed on short notice in rapid response scenarios, require a small footprint to operate, and offer an alternative means to releasing sterile insects to traditional manned aircraft. UAS, however, are currently limited in two key areas, range and payload capacity. Swarm technology, flying multiple UAS at once, may increase the utility of UAS by distributing payloads and release patterns across multiple UAS. In order to test the viability of swarm technology in the release of sterile insects we conducted multiple mark release recapture experiments over south Texas citrus groves during 2017, 2018, and 2019. The results of this study demonstrate improved release rates from 89.9% (n = 5) of flies released with ca. 0.64% recapture during 2018, to 98.2% (n = 6) released with ca. 0.74% recapture during 2019. These results demonstrate that swarm technology is a viable technique for increasing aerial release capacity and flexibility of sterile insect technique (SIT) programs.
Pelvic osteotomies for acetabular dysplasia: Are there outcomes, survivorship and complication differences between different osteotomy techniques?
Authors: Beck Edward C , Gowd Anirudh K , Paul Katlynn , Chahla Jorge , Marquez-Lara Alejandro J , Rasio Jonathan , Irie Torhu , Williams Joel , Nho Shane J 
Published: February 2021

AbstractThe purpose of this study was to evaluate the safety and efficacy of Periacetabular osteotomy (PAO), rotational acetabular osteotomy (RAO), and eccentric rotational acetabular osteotomy (ERAO) for treating hip dysplasia by comparing complication rates, survivorship, and functional outcomes after treatment. A systematic review in the MEDLINE and CINAHL databases was performed, and studies reporting outcomes after pelvic osteotomy for hip dysplasia with a minimum of 1-year follow-up or reported postoperative complications was included. Patient demographics, radiographic measurements, patient reported outcomes including the modified Harris hip score (mHHS), complications using the modified Clavien-Dindo classification, and reoperations were extracted from each study. A meta-analysis of outcome scores, complications, change in acetabular coverage, and revision rates for the 3 pelvic osteotomies was performed. A total of 47 articles detailing outcomes of 6,107 patients undergoing pelvic osteotomies were included in the final analysis. When stratified by procedure, RAO had a statistically greater change in LCEA when compared to PAO (33.9° vs 18.0°; P &lt;0.001). The average pooled mHHS improvement was 15.6 (95% CI: 8.3–22.8, I2= 99.4%). Although ERAO had higher mean score improvements when compared to RAO and PAO, the difference was not statistically significant (P &gt;0.05). Lastly, patients undergoing PAO had a statistically greater complication rate than those undergoing ERAO and RAO (P &lt;0.001 for both), while revision rate was not statistically different between the 3 techniques. In summary, there are many more publications on PAO surgery with a wide range of reported complications. Complications after ERAO and RAO surgery are lower than PAO surgery in the literature, but it is unclear whether this represents an actual difference or a reporting bias. Lastly, there are no significant differences between revisions, or postoperative reported outcomes between the 3 techniques.