bluuebunny/crossref_metadata_2025_split huggingface dataset:
Improving wheat grain yield via promotion of water and nitrogen utilization in arid areas
Authors: Tan Yan , Chai Qiang , Li Guang , Zhao Cai , Yu Aizhong , Fan Zhilong , Yin Wen , Hu Falong , Fan Hong , Wang Qiaomei , Guo Yao , Tian Xuemei 
Published: July 2021

AbstractCrop yield is limited by water and nitrogen (N) availability. However, in Hexi Corridor of northwestern China, water scarcity and excessive fertilizer N in wheat (Triticum aestivum L.) production causes serious conflicts between water and N supply and crop demand. A field experiment was conducted from 2016 to 2018 to evaluate whether reducing of irrigation and fertilizer N will reduce grain yield of wheat. There were two irrigation quotas (192 and 240 mm) and three fertilizer N rates (135, 180, and 225 kg N ha−1). The results showed that reducing irrigation to 192 mm and N rate to 180 kg N ha−1 reduced water uptake, water uptake efficiency, and N uptake of spring wheat as compared to local practice (i.e., 240 mm irrigation and 225 kg N ha−1 fertilizer). Whereas, it improved water and N utilization efficiency, and water and N productivity. Consequently, the irrigation and N rate reduced treatment achieved the same quantity of grain yield as local practice. The path analysis showed that interaction effect between irrigation and N fertilization may attributable to the improvement of grain yield with lower irrigation and N rate. The enhanced water and N utilization allows us to conclude that irrigation quota at 192 mm coupled with fertilizer N rate at 180 kg N ha−1 can be used as an efficient practice for wheat production in arid irrigation areas.
Severe Little Ice Age drought in the midcontinental United States during the Mississippian abandonment of Cahokia
Authors: Pompeani David P. , Bird Broxton W. , Wilson Jeremy J. , Gilhooly William P. , Hillman Aubrey L. , Finkenbinder Matthew S. , Abbott Mark B. 
Published: July 2021

AbstractDrought has long been suspected as playing an important role in the abandonment of pre-Columbian Native American settlements across the midcontinental United States between 1350 and 1450 CE. However, high-resolution paleoclimatic reconstructions reflecting local effective moisture (the ratio of precipitation to evaporation) that are located in proximity to Mississippi period (1050–1450 CE) population centers are lacking. Here, we present a 1600-year-long decadally resolved oxygen isotope (δ18O) record from Horseshoe Lake (Collinsville, IL), an evaporatively influenced oxbow lake that is centrally located within the largest and mostly densely populated series of Mississippian settlements known as Greater Cahokia. A shift to higher δ18O in the Horseshoe Lake sediment record from 1200 to 1400 CE indicates that strongly evaporative conditions (i.e., low effective moisture) were persistent during the leadup to Cahokia’s abandonment. These results support the hypothesis that climate, and drought specifically, strongly impacted agriculturally based pre-Columbian Native American cultures in the midcontinental US and highlights the susceptibility of this region, presently a global food production center, to hydroclimate extremes.
Random forest classification for predicting lifespan-extending chemical compounds
Authors: Kapsiani Sofia , Howlin Brendan J. 
Published: July 2021

AbstractAgeing is a major risk factor for many conditions including cancer, cardiovascular and neurodegenerative diseases. Pharmaceutical interventions that slow down ageing and delay the onset of age-related diseases are a growing research area. The aim of this study was to build a machine learning model based on the data of the DrugAge database to predict whether a chemical compound will extend the lifespan of Caenorhabditis elegans. Five predictive models were built using the random forest algorithm with molecular fingerprints and/or molecular descriptors as features. The best performing classifier, built using molecular descriptors, achieved an area under the curve score (AUC) of 0.815 for classifying the compounds in the test set. The features of the model were ranked using the Gini importance measure of the random forest algorithm. The top 30 features included descriptors related to atom and bond counts, topological and partial charge properties. The model was applied to predict the class of compounds in an external database, consisting of 1738 small-molecules. The chemical compounds of the screening database with a predictive probability of ≥ 0.80 for increasing the lifespan of Caenorhabditis elegans were broadly separated into (1) flavonoids, (2) fatty acids and conjugates, and (3) organooxygen compounds.
The evaluation of zebrafish cardiovascular and behavioral functions through microfluidics
Authors: Subendran Satishkumar , Wang Yi-Chieh , Lu Yueh-Hsun , Chen Chia-Yuan 
Published: July 2021

AbstractThis study proposed a new experimental approach for the vascular and phenotype evaluation of the non-anesthetized zebrafish with representative imaging orientations for heart, pectoral fin beating, and vasculature views by means of the designed microfluidic device through inducing the optomotor response and hydrodynamic pressure control. In order to provide the visual cues for better positioning of zebrafish, computer-animated moving grids were generated by an in-house control interface which was powered by the larval optomotor response, in conjunction with the pressure suction control. The presented platform provided a comprehensive evaluation of internal circulation and the linked external behaviors of zebrafish in response to the cardiovascular parameter changes. The insights from these imaging sections was extended to identify the linkage between the cardiac parameters and behavioral endpoints. In addition, selected chemicals such as ethanol and caffeine were employed for the treatment of zebrafish. The obtained findings can be applicable for future investigation in behavioral drug screening serving as the forefront in psychopharmacological and cognition research.
A metabolomics comparison of plant-based meat and grass-fed meat indicates large nutritional differences despite comparable Nutrition Facts panels
Authors: van Vliet Stephan , Bain James R. , Muehlbauer Michael J. , Provenza Frederick D. , Kronberg Scott L. , Pieper Carl F. , Huffman Kim M. 
Published: July 2021

AbstractA new generation of plant-based meat alternatives—formulated to mimic the taste and nutritional composition of red meat—have attracted considerable consumer interest, research attention, and media coverage. This has raised questions of whether plant-based meat alternatives represent proper nutritional replacements to animal meat. The goal of our study was to use untargeted metabolomics to provide an in-depth comparison of the metabolite profiles a popular plant-based meat alternative (n = 18) and grass-fed ground beef (n = 18) matched for serving size (113 g) and fat content (14 g). Despite apparent similarities based on Nutrition Facts panels, our metabolomics analysis found that metabolite abundances between the plant-based meat alternative and grass-fed ground beef differed by 90% (171 out of 190 profiled metabolites; false discovery rate adjusted p < 0.05). Several metabolites were found either exclusively (22 metabolites) or in greater quantities in beef (51 metabolites) (all, p < 0.05). Nutrients such as docosahexaenoic acid (ω-3), niacinamide (vitamin B3), glucosamine, hydroxyproline and the anti-oxidants allantoin, anserine, cysteamine, spermine, and squalene were amongst those only found in beef. Several other metabolites were found exclusively (31 metabolites) or in greater quantities (67 metabolites) in the plant-based meat alternative (all, p < 0.05). Ascorbate (vitamin C), phytosterols, and several phenolic anti-oxidants such as loganin, sulfurol, syringic acid, tyrosol, and vanillic acid were amongst those only found in the plant-based meat alternative. Large differences in metabolites within various nutrient classes (e.g., amino acids, dipeptides, vitamins, phenols, tocopherols, and fatty acids) with physiological, anti-inflammatory, and/or immunomodulatory roles indicate that these products should not be viewed as truly nutritionally interchangeable, but could be viewed as complementary in terms of provided nutrients. The new information we provide is important for making informed decisions by consumers and health professionals. It cannot be determined from our data if either source is healthier to consume.
Major and trace-element geochemistry of Late Cretaceous clastic rocks in the Jitai Basin, southeast China
Authors: Yan Kai , Wang Chun-lian , Mischke Steffen , Wang Jiu-yi , Shen Li-jian , Yu Xiao-can , Meng Ling-yang 
Published: July 2021

AbstractMajor, trace and rare earth element (REE) geochemistry of the late Cretaceous lower Zhoutian Formation from the Jitai Basin of Southeast China were measured by inductively coupled plasma mass spectrometry (ICP-MS) analysis to infer the provenance of the sediments and to reconstruct the palaeoenvironment and palaeoclimate. The wide range of Sr/Cu ratios point to a fluctuating palaeoclimate, and the negative correlation between the FeO/MnO and Al2O3/MgO ratios and the Sr/Cu ratio indicates that the late Cretaceous climate during the lower Zhoutian Formation in the Jitai Basin can be divided into two parts. The lower part experienced two cooling periods, whilst the upper part was dominated by warm-humid climate. Mostly corresponding trends of the B/Ga, Sr/Ba and Sr/Cu ratios show that the salinity changed consistently with the late Cretaceous climate during the lower Zhoutian Formation in the Jitai Basin. During the lower part, the salinity changed from salt water to fresh/brackish water. In the upper part, water was mainly fresh/brackish, and there were many changes from fresh/brackish water to salt water. The relatively stable Ni/Co, V/Cr, V/(V + Ni) and Ce/Ce* data indicate a long period of oxic conditions. The La-Th-Sc, Th-Sc-Zr/10 and La/Th-Hf data of the silt- and sandstones of the lower Zhoutian Formation show that its provenance was mainly a mixture of felsic upper crust sediments and older sedimentary rocks.
Klotho KL-VS haplotype does not improve cognition in a population-based sample of adults age 55–87 years
Authors: Müller Bernhard W. , Hinney Anke , Scherbaum Norbert , Weimar Christian , Kleinschnitz Christoph , Peters Triinu , Hochfeld Lara , Pechlivanis Sonali , Stang Andreas , Jokisch Martha , Kowall Bernd 
Published: July 2021

AbstractThe heterozygous human Klotho KL-VS haplotype has been associated with improved cognitive performance but results are inconsistent. Here we assessed Klotho KL-VS haplotype and cognition using data from the third examination of the population-based Heinz Nixdorf Recall Study. We analyzed cognition tests (immediate and delayed word list, Trail-Making Test [TMT] part A and B, Maze test, interference condition of the Stroop color-word test, verbal fluency) and their associations with Klotho KL-VS haplotype. The Klotho KL-VS haplotype is classified by the V-allele at SNP rs9536314 (F352V) and the S-allele at SNP rs9527025 (C370S). Heterozygotes for the KL-VS haplotype were compared with non-carriers. Analyses were performed in 1812 subjects (55–87 years). We found consistent but only slightly lower performance in heterozygous carriers of the KL-VS haplotype in all tasks with Z-scores ranging between Z = − 0.042 (verbal fluency) and − 0.17 (TMT part A). Differences between carriers and non-carriers were similar for men and women for all tests but TMT part B (interaction contrast = 8.4 s (95% CI − 2.3; 19.1)). While cognition declined with age, we found an effect modification by age (55–65 years, 66–75 years, > 75 years). In the 66–75 years KL-VS heterozygous age group, lower performance was seen in memory, visual attention and motor speed. Contrary to our hypothesis, heterozygous carriers of the KL-VS haplotype did not show enhanced performance in cognitive tests in our study.
Psycho-affective health, cognition, and neurophysiological functioning following sports-related concussion in symptomatic and asymptomatic athletes, and control athletes
Authors: Sicard V. , Harrison A. T. , Moore R. D. 
Published: July 2021

AbstractLittle is known about the neuropsychiatric and neurophysiological differences that characterize abnormal recovery following a concussion. The present study aimed to investigate the psycho-affective, cognitive, and neurophysiological profiles of symptomatic, slow-to-recover, concussed athletes, asymptomatic concussed athletes, and control athletes. Seventy-eight athletes (26 symptomatic, 26 asymptomatic, 26 control) completed the Beck Depression Inventory-II, Profile of Mood States, and 2-Back task. Additionally, event-related brain potentials were recorded during an experimental three-stimulus visual Oddball paradigm. Compared to asymptomatic and control groups, the symptomatic group reported greater depression symptoms and negatively altered mood states. Symptomatic athletes also exhibited poorer cognitive performance on the 2-Back task, indicated by more errors and slower reaction time. ERP analyses indicated prolonged P3b latency for both symptomatic and asymptomatic groups, but symptomatic athletes also exhibited reduced P3b amplitude compared to both asymptomatic and control groups. For the asymptomatic group, correlations were observed between time since last concussion and functioning, but no relations were observed within the symptomatic group for any measure. The current findings provide valuable information regarding the psycho-affective, cognitive, and neurophysiological profiles of athletes with and without persistent symptoms following a concussion and highlight the need to assess and treat symptomatic, slow-to-recover athletes from a multidimensional and integrative perspective.
Vitamin D receptor, vitamin D binding protein and CYP27B1 single nucleotide polymorphisms and susceptibility to viral infections in infants
Authors: Zacharioudaki Maria , Messaritakis Ippokratis , Galanakis Emmanouil 
Published: July 2021

AbstractThe role of vitamin D in innate and adaptive immunity is recently under investigation. In this study we explored the potential association of genetic variances in vitamin D pathway and infections in infancy. Τhis prospective case–control study included infants 0–24 months with infection and age-matched controls. The single nucleotide polymorphisms of vitamin D receptor (VDR) gene (BsmI, FokI, ApaI, TaqI), vitamin D binding protein (VDBP) (Gc gene, rs7041, rs4588) and CYP27B1 (rs10877012) were genotyped by polymerase chain reaction-restriction fragment length polymorphism. In total 132 infants were enrolled, of whom 40 with bacterial and 52 with viral infection, and 40 healthy controls. As compared to controls, ΤaqI was more frequent in infants with viral infection compared to controls (p = 0.03, OR 1.96, 95% CI 1.1–3.58). Moreover, Gc1F was more frequent in the control group compared to infants with viral infection (p = 0.007, OR 2.7, 95% CI 1.3–5.6). No significant differences were found regarding the genetic profile for VDR and VDBP in infants with bacterial infection compared to the controls and also regarding CYP27B1 (rs10877012) between the studied groups. Genotypic differences suggest that vitamin D pathway might be associated with the host immune response against viral infections in infancy.
Sequencing an F1 hybrid of Silurus asotus and S. meridionalis enabled the assembly of high-quality parental genomes
Authors: Chen Weitao , Zou Ming , Li Yuefei , Zhu Shuli , Li Xinhui , Li Jie 
Published: July 2021

AbstractGenome complexity such as heterozygosity may heavily influence its de novo assembly. Sequencing somatic cells of the F1 hybrids harboring two sets of genetic materials from both of the paternal and maternal species may avoid alleles discrimination during assembly. However, the feasibility of this strategy needs further assessments. We sequenced and assembled the genome of an F1 hybrid between Silurus asotus and S. meridionalis using the SequelII platform and Hi-C scaffolding technologies. More than 300 Gb raw data were generated, and the final assembly obtained 2344 scaffolds composed of 3017 contigs. The N50 length of scaffolds and contigs was 28.55 Mb and 7.49 Mb, respectively. Based on the mapping results of short reads generated for the paternal and maternal species, each of the 29 chromosomes originating from S. asotus and S. meridionalis was recognized. We recovered nearly 94% and 96% of the total length of S. asotus and S. meridionalis. BUSCO assessments and mapping analyses suggested that both genomes had high completeness and accuracy. Further analyses demonstrated the high collinearity between S. asotus, S. meridionalis, and the related Pelteobagrus fulvidraco. Comparison of the two genomes with that assembled only using the short reads from non-hybrid parental species detected a small portion of sequences that may be incorrectly assigned to the different species. We supposed that at least part of these situations may have resulted from mitotic recombination. The strategy of sequencing the F1 hybrid genome can recover the vast majority of the parental genomes and may improve the assembly of complex genomes.
Development and testing of a game-based digital intervention for working memory training in autism spectrum disorder
Authors: Wagle Surbhit , Ghosh Arka , Karthic P. , Ghosh Akriti , Pervaiz Tarana , Kapoor Rashmi , Patil Koumudi , Gupta Nitin 
Published: July 2021

AbstractAutism spectrum disorder (ASD) is prevalent globally, yet it lacks cost-effective treatment approaches. Deficits in executive functions occur frequently in autism spectrum disorder and present a target for intervention. Here we report the design and development of five smartphone-based games for training working memory in children with ASD. These open-source games, available free of cost to the community, were designed to match the behavioral preferences and sensorimotor abilities of children with ASD. We then conducted a preliminary trial to test the effectiveness of a month-long intervention using these games. Although we did not see a significant change in the working memory of all children with a month-long training, children who performed better on the games also showed more improvement in their working memory, suggesting that a longer intervention with the games might be useful in improving working memory. Using a Hindi translation of the autism treatment evaluation checklist, we also tested the collateral gains of the training in reducing autistic symptoms. We found no significant change in the autistic symptoms after the intervention. Further, there was no correlation between the change in the working memory and the change in the autistic symptoms.
Clinical significance of monitoring hypothyroidism in patients with autoimmune rheumatic disease: a retrospective cohort study
Authors: Fukui Sho , Ikeda Yukihiko , Kataoka Yuko , Yanaoka Haruyuuki , Tamaki Hiromichi , Tsuda Tokutarou , Kishimoto Mitsumasa , Noto Hiroshi , Ohde Sachiko , Okada Masato 
Published: July 2021

AbstractWe evaluated whether thyroid function test (TFT) screening is warranted for patients with autoimmune rheumatic diseases (ARD) by comparing the incidence of hypothyroidism requiring treatment (HRT) in ARD patients and healthy controls (HCs). Medical records of 2307 ARD patients and 78,251 HCs for whom thyroid-stimulating hormone (TSH) levels were measured between 2004 and 2018 were retrospectively reviewed. Cumulative incidence of HRT in ARD patients and HCs was compared. HRT development was evaluated with age- and sex-adjusted Kaplan–Meier curve. Risk factors were identified with Cox proportional hazard models. HRT was significantly more common in ARD patients than in HCs (6.3% vs. 1.9%, P < 0.001). After adjusting for age, sex, and baseline TSH level, hazard ratios for HRT were significantly higher in overall ARD patients (hazard ratio [95% confidence interval] 3.99 [3.27–4.87]; P < 0.001), particularly with rheumatoid arthritis and antinuclear antibody-associated diseases in female, and antinuclear antibody-associated diseases, spondyloarthritis, and vasculitis in male patients. Baseline high TSH level, thyroid-related autoantibody positivity, high IgG, and renal impairment were significant risk factors for hypothyroidism development in ARD patients; 20% of high-risk patients developed HRT during follow-up. HRT was significantly more frequent in ARD patients. Careful TFT screening and follow-up could help detecting clinically important hypothyroidism.
Kinetics modeling, thermodynamics and thermal performance assessments of pyrolytic decomposition of Moringa oleifera husk and Delonix regia pod
Authors: Balogun Ayokunle O. , Adeleke Adekunle A. , Ikubanni Peter P. , Adegoke Samuel O. , Alayat Abdulbaset M. , McDonald Armando G. 
Published: July 2021

AbstractA non-isothermal decomposition of Moringa oleifera husk and Delonix regia seed pod was carried out in an N2 pyrolytic condition with the primary objective of undertaking the kinetics modeling, thermodynamics and thermal performance analyses of the identified samples. Three different isoconversional models, namely, differential Friedman, Flynn–Wall–Ozawa, and Starink techniques were utilized for the deduction of the kinetics data. The thermodynamic parameters were deduced from the kinetic data based on a first-order chemical reaction model. In the kinetics study, a strong correlation (R2 > 0.9) was observed throughout the conversion range for all the kinetic models. The activation energy profiles showed two distinctive regions. In the first region, the average activation energy values were relatively higher—a typical example is in the Flynn–Wall–Ozawa technique—MH (199 kJ/mol) and RP (194 kJ/mol), while in the second region, MH (292 kJ/mol) and RP (234 kJ/mol). It was also demonstrated that the thermal process for the samples experienced endothermic reactions thought the conversion range. In summary, both the kinetic and thermodynamic parameters vary significantly with conversion—underscoring the complexity associated with the thermal conversion of lignocellulosic biomass samples.
U–Pb ages of detrital zircons in Cretaceous–Paleogene/Neogene kaolins within Eastern Dahomey and Niger Delta Basins (Nigeria) as provenance indicators
Authors: Oyebanjo Olaonipekun , Ekosse Georges-Ivo , Odiyo John 
Published: July 2021

AbstractDetrital zircon grains within four (4) deposits including two (2) Cretaceous and two (2) Paleogene/Neogene kaolins in Nigeria were analysed using U–Pb LA-SFICP-MS to determine their provenance. The zircon textures were dominated by xenocrystic cores and oscillatory zoning in the Cretaceous and Paleogene/Neogene kaolins, respectively. The Th/U ratios obtained for the detrital zircon grains within the kaolins were predominantly within known values for rocks with magmatic origin. The age populations obtained for the detrital zircon grains were dominated by values from 529 to 978 Ma within the Neoproterozoic, followed by values from 1754 to 2497 Ma of the Paleoproterozoic. Detrital zircon ages obtained between 553.2 ± 6.2 and 583.5 ± 2.0 Ma represent part of the minimum provenance ages for the primary minerals that were kaolinised. The Cretaceous–Paleogene/Neogene kaolins were derived from parent rocks of Eburnean and Pan African ages within the Western and Northern Nigeria Basements.
Gastrointestinal digestion of dietary advanced glycation endproducts increases their pro-inflammatory potential
Authors: van der Lugt T. , Vrolijk M. F. , Bovee T. F. H. , van Leeuwen S. P. J. , Vonsovic S. , Hamers A. , Opperhuizen A. , Bast A. 
Published: July 2021

Digestion of dietary advanced glycation endproducts (dAGEs) increases its pro-inflammatory potential in vitro.
Charge transfer doping with an organic layer to achieve a high-performance p-type WSe2 transistor
Authors: Yoon Minho , Lee Jiyoul 
Published: July 2021

A WSe2 FET with a top DNTT layer was fabricated and exhibited remarkable performances: decent on–off switching and high hole mobility. The deposition of DNTT on the WSe2 induced the charge transfer from DNTT to WSe2 and, thus, p-doping of the latter.