bluuebunny/crossref_metadata_2025_split huggingface dataset:
A peptidoglycan storm caused by β-lactam antibiotic’s action on host microbiota drives Candida albicans infection
Authors: Tan Chew Teng , Xu Xiaoli , Qiao Yuan , Wang Yue 
Published: May 2021

AbstractThe commensal fungus Candida albicans often causes life-threatening infections in patients who are immunocompromised with high mortality. A prominent but poorly understood risk factor for the C. albicans commensal‒pathogen transition is the use of broad-spectrum antibiotics. Here, we report that β-lactam antibiotics cause bacteria to release significant quantities of peptidoglycan fragments that potently induce the invasive hyphal growth of C. albicans. We identify several active peptidoglycan subunits, including tracheal cytotoxin, a molecule produced by many Gram-negative bacteria, and fragments purified from the cell wall of Gram-positive Staphylococcus aureus. Feeding mice with β-lactam antibiotics causes a peptidoglycan storm that transforms the gut from a niche usually restraining C. albicans in the commensal state to promoting invasive growth, leading to systemic dissemination. Our findings reveal a mechanism underlying a significant risk factor for C. albicans infection, which could inform clinicians regarding future antibiotic selection to minimize this deadly disease incidence.
Compartmentalization of bacterial and fungal microbiomes in the gut of adult honeybees
Authors: Callegari Matteo , Crotti Elena , Fusi Marco , Marasco Ramona , Gonella Elena , De Noni Ivano , Romano Diego , Borin Sara , Tsiamis George , Cherif Ameur , Alma Alberto , Daffonchio Daniele 
Published: May 2021

AbstractThe core gut microbiome of adult honeybee comprises a set of recurring bacterial phylotypes, accompanied by lineage-specific, variable, and less abundant environmental bacterial phylotypes. Several mutual interactions and functional services to the host, including the support provided for growth, hormonal signaling, and behavior, are attributed to the core and lineage-specific taxa. By contrast, the diversity and distribution of the minor environmental phylotypes and fungal members in the gut remain overlooked. In the present study, we hypothesized that the microbial components of forager honeybees (i.e., core bacteria, minor environmental phylotypes, and fungal members) are compartmentalized along the gut portions. The diversity and distribution of such three microbial components were investigated in the context of the physico-chemical conditions of different gut compartments. We observed that changes in the distribution and abundance of microbial components in the gut are consistently compartment-specific for all the three microbial components, indicating that the ecological and physiological interactions among the host and microbiome vary with changing physico-chemical and metabolic conditions of the gut.
Pulmonary function testing in COPD: looking beyond the curtain of FEV1
Authors: Kakavas Sotirios , Kotsiou Ourania S. , Perlikos Fotis , Mermiri Maria , Mavrovounis Georgios , Gourgoulianis Konstantinos , Pantazopoulos Ioannis 
Published: May 2021

AbstractChronic obstructive pulmonary disease (COPD) management remains challenging due to the high heterogeneity of clinical symptoms and the complex pathophysiological basis of the disease. Airflow limitation, diagnosed by spirometry, remains the cornerstone of the diagnosis. However, the calculation of the forced expiratory volume in the first second (FEV1) alone, has limitations in uncovering the underlying complexity of the disease. Incorporating additional pulmonary function tests (PFTs) in the everyday clinical evaluation of COPD patients, like resting volume, capacity and airway resistance measurements, diffusion capacity measurements, forced oscillation technique, field and cardiopulmonary exercise testing and muscle strength evaluation, may prove essential in tailoring medical management to meet the needs of such a heterogeneous patient population. We aimed to provide a comprehensive overview of the available PFTs, which can be incorporated into the primary care physician’s practice to enhance the efficiency of COPD management.
Multiple spin-orbit excitons in α-RuCl3 from bulk to atomically thin layers
Authors: Lee Je-Ho , Choi Youngsu , Do Seung-Hwan , Kim Beom Hyun , Seong Maeng-Je , Choi Kwang-Yong 
Published: May 2021

AbstractThe van der Waals Kitaev magnet α-RuCl3 has recently garnered considerable attention due to its possible realization of topological spin liquids. Combining Raman spectroscopy with numerical calculations, we report here the thickness dependence of electronic structure and ensuing low-energy excitations for exfoliated α-RuCl3. We observe two pronounced peaks at A1 = 249 meV and A2 = 454 meV, which are assigned to single and double spin-orbit (SO) excitons, respectively. Our numerical calculations support this interpretation by reproducing their spectral energy and shape with the electronic parameters: SO coupling λ = 140 meV, Hund’s coupling JH = 350 meV, and on-site Coulomb interaction U = 2.35 eV. The multiple SO excitons persist down to a single layer, whereas their peaks shift slightly to lower energy. For frequencies below 350 cm−1, both a magnetic continuum and phonons show noticeable thickness dependence. These results demonstrate that a SO entangled jeff = 1/2 picture remains valid in a monolayer limit despite the presence of lattice distortions.
A chimeric dengue virus vaccine candidate delivered by high density microarray patches protects against infection in mice
Authors: Choo Jovin J. Y. , Vet Laura J. , McMillan Christopher L. D. , Harrison Jessica J. , Scott Connor A. P. , Depelsenaire Alexandra C. I. , Fernando Germain J. P. , Watterson Daniel , Hall Roy A. , Young Paul R. , Hobson-Peters Jody , Muller David A. 
Published: May 2021

AbstractDengue viruses (DENV) cause an estimated 390 million infections globally. With no dengue-specific therapeutic treatment currently available, vaccination is the most promising strategy for its control. A wide range of DENV vaccines are in development, with one having already been licensed, albeit with limited distribution. We investigated the immunogenicity and protective efficacy of a chimeric virus vaccine candidate based on the insect-specific flavivirus, Binjari virus (BinJV), displaying the structural prM/E proteins of DENV (BinJ/DENV2-prME). In this study, we immunized AG129 mice with BinJ/DENV2-prME via a needle-free, high-density microarray patch (HD-MAP) delivery system. Immunization with a single, 1 µg dose of BinJ/DENV2-prME delivered via the HD-MAPs resulted in enhanced kinetics of neutralizing antibody induction when compared to needle delivery and complete protection against mortality upon virus challenge in the AG129 DENV mouse model.
Chemical profiling, in vitro antioxidant, membrane stabilizing and antimicrobial properties of wild growing Murraya paniculata from Amarkantak (M.P.)
Authors: Sonter Shruti , Mishra Shringika , Dwivedi Manish Kumar , Singh Prashant Kumar 
Published: May 2021

AbstractThe excessive usage of antibiotics in humans and veterinary medicine has lead to the emergence of antibiotic resistance and now requires the use of novel antibiotics. There has been increased interest towards plants as source of drugs because of their pharmacological potency and long traditional usage. The aim of the current study was to evaluate bioactive components, antioxidant, and anti-inflammatory activities of the leaf extracts ofMurraya paniculata,a plant traditionally used in Indian medicinal system. Evaluations were made for phytochemical analysis, antioxidant, membrane stabilizing, and antimicrobial activities. The methanol extract displayed the highest flavonoid and phenolic content, the acetone extract demonstrated considerable ABTS inhibitory activity (IC50value:555.18 ± 1.68 µg/mL) and the hexane extract exhibited highest H2O2radical scavenging activity (IC50value: 509.84 ± 3.03 µg/mL). The aqueous extract displayed 19.4 ± 0.66% RBC hemolysis and 80.5 ± 0.66% protection caused by hypotonic solution at high concentration of the extract. The fractions of hexane extract revealed a higher zone of inhibition than crude extract. The major components found in the fractions were cyclohexane (40.11%) and 3-(6-Methoxy-3-methyl-2-benzofuranyl) Cyclohexanone (13.68%) as analyzed by GC–MS/MS technique. The current results validate the traditional use of theM. paniculataand warrant its potential in drug development programs in further investigations.
Nitrogen oxides concentration and emission change detection during COVID-19 restrictions in North India
Authors: Misra Prakhar , Takigawa Masayuki , Khatri Pradeep , Dhaka Surendra K. , Dimri A. P. , Yamaji Kazuyo , Kajino Mizuo , Takeuchi Wataru , Imasu Ryoichi , Nitta Kaho , Patra Prabir K. , Hayashida Sachiko 
Published: May 2021

AbstractCOVID-19 related restrictions lowered particulate matter and trace gas concentrations across cities around the world, providing a natural opportunity to study effects of anthropogenic activities on emissions of air pollutants. In this paper, the impact of sudden suspension of human activities on air pollution was analyzed by studying the change in satellite retrieved NO2 concentrations and top-down NOx emission over the urban and rural areas around Delhi. NO2 was chosen for being the most indicative of emission intensity due to its short lifetime of the order of a few hours in the planetary boundary layer. We present a robust temporal comparison of Ozone Monitoring Instrument (OMI) retrieved NO2 column density during the lockdown with the counterfactual baseline concentrations, extrapolated from the long-term trend and seasonal cycle components of NO2 using observations during 2015 to 2019. NO2 concentration in the urban area of Delhi experienced an anomalous relative change ranging from 60.0% decline during the Phase 1 of lockdown (March 25–April 13, 2020) to 3.4% during the post-lockdown Phase 5. In contrast, we find no substantial reduction in NO2 concentrations over the rural areas. To segregate the impact of the lockdown from the meteorology, weekly top-down NOx emissions were estimated from high-resolution TROPOspheric Monitoring Instrument (TROPOMI) retrieved NO2 by accounting for horizontal advection derived from the steady state continuity equation. NOx emissions from urban Delhi and power plants exhibited a mean decline of 72.2% and 53.4% respectively in Phase 1 compared to the pre-lockdown business-as-usual phase. Emission estimates over urban areas and power-plants showed a good correlation with activity reports, suggesting the applicability of this approach for studying emission changes. A higher anomaly in emission estimates suggests that comparison of only concentration change, without accounting for the dynamical and photochemical conditions, may mislead evaluation of lockdown impact. Our results shall also have a broader impact for optimizing bottom-up emission inventories.
Maternal pre-pregnancy weight and early life lower respiratory tract infections in a low-income urban minority birth cohort
Authors: Gutierrez Maria J. , Nino Gustavo , Hong Xiumei , Wang Xiaobin 
Published: May 2021

AbstractThe prevalence of maternal obesity has increased dramatically with adverse consequences on infant health. Prior studies have reported associations between maternal obesity and childhood wheeze, asthma as well as lower respiratory tract infections (LRTI). However, studies examining the association of obesity with early-life LRTIs in low-income urban minority populations are still lacking. This is a critical gap because both obesity and infant respiratory morbidity are more prevalent and severe in these communities. We examined mother‐child dyads from the Boston Birth Cohort (BBC) to define the longitudinal association of maternal pre‐pregnancy BMI and LRTI in infancy, defined as the presence of bronchiolitis, bronchitis, or pneumonia during the first year of life (< 12 months of age). A total of 2,790 mother‐child dyads were included in our analyses. Infants born to pre-pregnancy obese mothers (n = 688, 25%) had 1.43 increased odds (adjOR = 1.43, 95% CI 1.08–1.88, p = 0.012) of developing LRTI during the first year of life when compared with newborns born to normal-weight mothers after adjusting by relevant LRTI risk factors. Notably, infants born to overweight mothers (n = 808, 29%) followed a similar trend (adjOR = 1.31, 95% CI 1.00–1.72, p = 0.048). Our study demonstrated that maternal pre-pregnancy obesity is an independent risk factor for the development of LRTI during infancy in a low-income urban minority birth cohort.
A role for the fusogen eff-1 in epidermal stem cell number robustness in Caenorhabditis elegans
Authors: Koneru Sneha L. , Quah Fu Xiang , Ghose Ritobrata , Hintze Mark , Gritti Nicola , van Zon Jeroen Sebastiaan , Barkoulas Michalis 
Published: May 2021

AbstractDevelopmental patterning in Caenorhabditis elegans is known to proceed in a highly stereotypical manner, which raises the question of how developmental robustness is achieved despite the inevitable stochastic noise. We focus here on a population of epidermal cells, the seam cells, which show stem cell-like behaviour and divide symmetrically and asymmetrically over post-embryonic development to generate epidermal and neuronal tissues. We have conducted a mutagenesis screen to identify mutants that introduce phenotypic variability in the normally invariant seam cell population. We report here that a null mutation in the fusogen eff-1 increases seam cell number variability. Using time-lapse microscopy and single molecule fluorescence hybridisation, we find that seam cell division and differentiation patterns are mostly unperturbed in eff-1 mutants, indicating that cell fusion is uncoupled from the cell differentiation programme. Nevertheless, seam cell losses due to the inappropriate differentiation of both daughter cells following division, as well as seam cell gains through symmetric divisions towards the seam cell fate were observed at low frequency. We show that these stochastic errors likely arise through accumulation of defects interrupting the continuity of the seam and changing seam cell shape, highlighting the role of tissue homeostasis in suppressing phenotypic variability during development.
Endothelial glycocalyx degradation and disease severity in Plasmodium vivax and Plasmodium knowlesi malaria
Authors: Barber Bridget E. , Grigg Matthew J. , Piera Kim A. , Chen Youwei , William Timothy , Weinberg J. Brice , Yeo Tsin W. , Anstey Nicholas M. 
Published: May 2021

AbstractDegradation of the endothelial glycocalyx is associated with mortality in adult falciparum malaria. However, its role in the pathogenesis of non-falciparum malaria is unknown. In Malaysian patients with knowlesi (n = 200) and vivax (n = 61) malaria, and in healthy controls (n = 50), we measured glycocalyx breakdown products plasma syndecan-1 and urinary glycosaminoglycans, and evaluated correlations with biomarkers of disease severity. Urinary glycosaminoglycans were increased in patients with knowlesi and vivax malaria compared to healthy controls, and in knowlesi malaria were highest in those with severe disease. In knowlesi malaria, plasma syndecan-1 was also highest in those with severe disease, and correlated with markers of endothelial activation (angiopoietin-2, osteoprotegerin, ICAM-1), asymmetric dimethylarginine (ADMA) and impaired microvascular reactivity. Syndecan-1 also correlated with endothelial activation (ICAM-1, angiopoietin-2) and ADMA in vivax malaria. In knowlesi malaria increased syndecan-1 was associated with acute kidney injury, after controlling for age and parasitemia. In knowlesi malaria, the difference in median syndecan-1 between severe and non-severe disease was more marked in females than males. Endothelial glycocalyx degradation is increased in knowlesi and vivax malaria, and associated with disease severity and acute kidney injury in knowlesi malaria. Agents that inhibit glycocalyx breakdown may represent adjunctive therapeutics for severe non-falciparum malaria.
Impact of environmental changes on the behavioral diversity of the Odonata (Insecta) in the Amazon
Authors: de Resende Bethânia O. , Ferreira Victor Rennan S. , Brasil Leandro S. , Calvão Lenize B. , Mendes Thiago P. , de Carvalho Fernando G. , Mendoza-Penagos Cristian C. , Bastos Rafael C. , Brito Joás S. , Oliveira-Junior José Max B. , Dias-Silva Karina , Luiza-Andrade Ana , Guillermo Rhainer , Cordero-Rivera Adolfo , Juen Leandro 
Published: May 2021

AbstractThe odonates are insects that have a wide range of reproductive, ritualized territorial, and aggressive behaviors. Changes in behavior are the first response of most odonate species to environmental alterations. In this context, the primary objective of the present study was to assess the effects of environmental alterations resulting from shifts in land use on different aspects of the behavioral diversity of adult odonates. Fieldwork was conducted at 92 low-order streams in two different regions of the Brazilian Amazon. To address our main objective, we measured 29 abiotic variables at each stream, together with five morphological and five behavioral traits of the resident odonates. The results indicate a loss of behaviors at sites impacted by anthropogenic changes, as well as variation in some morphological/behavioral traits under specific environmental conditions. We highlight the importance of considering behavioral traits in the development of conservation strategies, given that species with a unique behavioral repertoire may suffer specific types of extinction pressure.
Results of a German wide survey towards current surgical approach in early stage cervical cancer NOGGO MONITOR 11
Authors: Armbrust Robert , Chen Frank , Richter Rolf , Muallem Mustafa Zela , Mustea Alexander , Holthaus Bernd , Sehouli Jalid 
Published: May 2021

AbstractMinimally invasive surgery (MIS) has become the standard approach in early stage cervical cancer (ECC). However, the recently published “LACC” trial and even others could show inferior PFS and OS of MIS compared to open radical hysterectomy. The results led to a widespread debate about the best surgical approach in ECC. The present survey aimed to get first insights after publication. NOGGO and AGE conducted a nationwide digital survey among 186 Gynecological Cancer Centers. Descriptive statistics and t-tests were performed using SPSS. A majority of the centers were of high expertise and/or experience in treatment of ECC and were highly aware of the LACC trial results. Trial quality and scientific value were rated as very good/good. However, still 40% would not change the standard of care to open surgery. Centers with higher volume and participating in clinical trials were more likely to change. This survey represents insights after the surprising results of recently published trials towards the surgical approach of ECC. There still seems to be a high need of future trials and possible explanations for the unexpected worse outcomes in the MIS group.
Effects of TiO2 structure and Co addition as a second metal on Ru-based catalysts supported on TiO2 for selective hydrogenation of furfural to FA
Authors: Tolek Weerachon , Nanthasanti Natdanai , Pongthawornsakun Boontida , Praserthdam Piyasan , Panpranot Joongjai 
Published: May 2021

AbstractThe TiO2 supported Ru-based catalysts were prepared with 1.5 wt% Ru and 0–0.8 wt% Co on various TiO2 (anatase, rutile, P-25, and sol–gel TiO2) and studied in the liquid-phase selective hydrogenation of furfural to furfuryl alcohol (FA) under mild conditions (50 °C and 2 MPa H2). The presence of high anatase crystallographic composition on TiO2 support was favorable for enhancing hydrogenation activity, while the strong interaction between Ru and TiO2 (Ru–TiOx sites) was required for promoting the selectivity to FA. The catalytic performances of bimetallic Ru–Co catalysts were improved with increasing Co loading due to the synergistic effect of Ru–Co alloying system together with the strong interaction between Ru and Co as revealed by XPS, H2-TPR, and TEM–EDX results. The enhancement of reducibility of Co oxides in the bimetallic Ru–Co catalysts led to higher hydrogenation activity with the Ru–0.6Co/TiO2 catalyst exhibited the best performances in FA selective hydrogenation of furfural to FA under the reaction conditions used.
Analysing nystagmus waveforms: a computational framework
Authors: Abadi Richard V. , Akman Ozgur E. , Arblaster Gemma E. , Clement Richard A. 
Published: May 2021

AbstractWe present a new computational approach to analyse nystagmus waveforms. Our framework is designed to fully characterise the state of the nystagmus, aid clinical diagnosis and to quantify the dynamical changes in the oscillations over time. Both linear and nonlinear analyses of time series were used to determine the regularity and complexity of a specific homogenous phenotype of nystagmus. Two-dimensional binocular eye movement recordings were carried out on 5 adult subjects who exhibited a unilateral, uniplanar, vertical nystagmus secondary to a monocular late-onset severe visual loss in the oscillating eye (the Heimann-Bielschowsky Phenomenon). The non-affected eye held a central gaze in both horizontal and vertical planes (± 10 min. of arc). All affected eyes exhibited vertical oscillations, with mean amplitudes and frequencies ranging from 2.0°–4.0° to 0.25–1.5 Hz, respectively. Unstable periodic orbit analysis revealed only 1 subject exhibited a periodic oscillation. The remaining subjects were found to display quasiperiodic (n = 1) and nonperiodic (n = 3) oscillations. Phase space reconstruction allowed attractor identification and the computation of a time series complexity measure—the permutation entropy. The entropy measure was found to be able to distinguish between a periodic oscillation associated with a limit cycle attractor, a quasiperiodic oscillation associated with a torus attractor and nonperiodic oscillations associated with higher-dimensional attractors. Importantly, the permutation entropy was able to rank the oscillations, thereby providing an objective index of nystagmus complexity (range 0.15–0.21) that could not be obtained via unstable periodic orbit analysis or attractor identification alone. These results suggest that our framework provides a comprehensive methodology for characterising nystagmus, aiding differential diagnosis and also permitting investigation of the waveforms over time, thereby facilitating the quantification of future therapeutic managements. In addition, permutation entropy could provide an additional tool for future oculomotor modelling.
Structural insight into Pichia pastoris fatty acid synthase
Authors: Snowden Joseph S. , Alzahrani Jehad , Sherry Lee , Stacey Martin , Rowlands David J. , Ranson Neil A. , Stonehouse Nicola J. 
Published: May 2021

AbstractType I fatty acid synthases (FASs) are critical metabolic enzymes which are common targets for bioengineering in the production of biofuels and other products. Serendipitously, we identified FAS as a contaminant in a cryoEM dataset of virus-like particles (VLPs) purified from P. pastoris, an important model organism and common expression system used in protein production. From these data, we determined the structure of P. pastoris FAS to 3.1 Å resolution. While the overall organisation of the complex was typical of type I FASs, we identified several differences in both structural and enzymatic domains through comparison with the prototypical yeast FAS from S. cerevisiae. Using focussed classification, we were also able to resolve and model the mobile acyl-carrier protein (ACP) domain, which is key for function. Ultimately, the structure reported here will be a useful resource for further efforts to engineer yeast FAS for synthesis of alternate products.