bluuebunny/crossref_metadata_2025_split huggingface dataset:
PSVI-16 Comparison of univariate and multivariate machine learning applications for genomic predictions of growth and carcass traits from Brangus heifers
Authors: Peters Sunday O , Sinecen Mahmut , Kizilkaya Kadir , Thomas Milton G 
Published: October 2021

Abstract
Data for growth and carcass traits were obtained from 738 Brangus heifers (3/8 Brahman-Bos indicus × 5/8 Angus-Bos taurus) registered with International Brangus Breeders Association. Phenotypes included body weights (BW, WW, and YW) collected at birth, ~205 and 365 d of age for growth traits and yearling ultrasound assessment of longissimus muscle area (LMA), percent intramuscular fat (IMF), and depth of rib fat (FAT) for carcass traits and were used to compare univariate and multivariate artificial neural networks (ANN) models with the learning algorithms (Levenberg–Marquardt (LM), Bayesian Regularization (BR) and Scaled Conjugate Gradient (SCG)) and transfer functions (tangent sigmoid and linear) using 1 to 20 neurons models based on the input from G genomic relationship matrix. Pearson correlation coefficients for evaluating model performances in testing datasets indicated that univariate ANN models resulted in better genomic prediction than the multivariate ANN models regardless of the learning algorithms and transfer functions for carcass traits. However, there was no clear difference between univariate and multivariate ANN models about genomic prediction for growth traits. In multivariate ANN models, the prediction performance of the combination of learning algorithms and transfer functions changed for growth and carcass traits and there were no superior multivariate ANN models with BR, LM and SCG learning algorithms and transfer functions. However, the correlation coefficients from univariate ANN-BR model indicated better genomic prediction than univariate ANN-LM and ANN-SCG models. The application of different transfer functions did not make any significant difference on the genomic prediction performance of ANN models with different learning algorithms. Results of this study suggest the use of univariate ANN models with BR learning algorithm for genomic prediction of growth and carcass traits.
PSVI-14 Characteristic of hybrid chicken derived from crossing of Ogye and white leghorn
Authors: Roh Hee-Jong , Jae-Hwan Kim , Kim Seung-Chang , Jin Daehyeok , Cha Ji-Hye , Lee Jun-Heon 
Published: October 2021

Abstract
Ogye, an indigenous Korean chicken breed has entirely black external features and internal organs. White Leghron, an transboundary breed has white color features as opposed to Ogye. We make crossbreed (Ogye x White Leghorn) to investigate how the phenotype appeared in F1. In F0, 5 females and 1 male were selected for each parental type; 1) Ogye(♂) x White leghorn(♀), 2) White leghron(♂) x Ogye(♀). We A total of 321 individuals of F1 were made through artificial insemination. We measured body weights at birth, 8 weeks, 16 weeks, 24 weeks, and 32 weeks of age. In 1) type females, the average of body weight at each period was 39.04±0.32, 613.18±6.86, 1149.37±7.76, 1463.97±13.25, 1718.02±14.83 respectively. In 2 type females, that was 30.57±0.21, 543.19±7.54, 1069.63±12.92, 1410.06±10.80, 1527.53±13.73. The P-value values for each period were less than 0.05. In 1) type males, the average of body weight at each period was 39.18±0.34, 744.70±7.84, 1579.39±15.76, 2014.63±19.15, 2310.89±20.58. In 2 type females, that was 30.71±0.24, 683.75±9.51, 1419.79±15.76, 1800.00±18.88, 2064.79±19.68. The P-value values for each period were also less than 0.05. In the case of feather color, it was generally white, but black spots appeared only in females produced in type 1). Comb and beak color was generally also red, but black appeared only in in females produced in type 1). From these results, it can be estimated that paternal factors such as weight and appearance are greatly affected, and we plan to investigate the genetic patterns of each trait through F2 construction in the future.
PSVII-26 Follicular growth in beef cows when using a low dose of FSH and hCG at the time of CIDR removal in a 7-day co-synch + CIDR protocol
Authors: Heredia Daniella C , Ojeda-Rojas Oscar A , Tarnonsky Federico , Gonella-Diaza Angela Maria M , Di Lorenzo Nicolas , Almeida Marina 
Published: October 2021

Abstract
The aim of the study was to compare the growth of the periovulatory follicle in crossbreed cows receiving either a low dose of hCG (150 IU; Chorulon®, Merck) or a low dose of FSH (20 mg)Folltropin®, Vetoquinol) vs. a control group when applied at CIDR removal during an estrus synchronization protocol. At d0, a CIDR (Eazi-Breed CIDR®, Zoetis) was placed, a dose of GnRH (Factrel®, Zoetis) was applied i.m. and transrectal ultrasound was conducted to evaluate cyclicity status. On d7, cows (n = 79) were randomly assigned to three treatments (Control n = 27, FSH n = 26, and hCG n = 26) according to body condition score (1 to 9 scale) and cyclicity status. On the same day, CIDR was removed, a dose of prostaglandin analog (Lutalyse HighCon Injection®, Zoetis) was administered i.m. and an Estrotect™ patch was placed between the hip and tail head. Transrectal ultrasound was conducted to evaluate the diameter of the preovulatory follicle (DPF) at d7 and every 12h from d8 until ovulation was detected. Five cows that did not ovulate were removed from the study. Data were analyzed using GLIMMIX and LIFETEST procedures (SAS). The diameter at ovulation was not different among treatments (Control: 13.02 ± 0.53 mm; FSH: 12.38 ± 0.54 mm; hCG; 11.69 ± 0.47 mm; P = &gt;0.10). Also, the time to ovulation was not different among treatments (P = 0.65; Figure 1a). However, cows of the control group presented estrus signs earlier than FSH and hCG groups (P = 0.02, Figure 1b). In conclusion, the use of a low dose of hCG or FSH at the time of CIDR removal did not increase the DPF or the time to ovulation.
PSVII-29 Genetic analysis of frame score and performance traits in Nellore cattle – reproduction and productivity traits
Authors: Baldi Fernando S , Negreiros Maria Paula , Peripolli Elisa , Magnabosco Claudio U , Guimarães Nayanny , Lôbo Raysildo , Sainz Roberto D 
Published: October 2021

Abstract
Frame score systems developed for Bos taurus breeds do not translate well for Bos indicus breeds, as these tend to be taller. We evaluated a novel frame score system for Nellore cattle raised on pasture [Guimaraes et al., 2020 J, Anim. Sci. 98 (Suppl. 4)]. Traits included adjusted scrotal circumference (cm) at 365 (SC365) and 450 (SC450) days of age, age at first calving (AFC, d), early heifer pregnancy (EHP, % calving as two-year-olds), stayability (STAY, % of cows remaining in the herd over 76 months of age, calving at least three times), and accumulated productivity (AP, kg of calf weaned per cow per year). In this study, we applied the previously developed equations (that also include hip height (HH, cm) and age to 12,049 records from the National Association of Breeders and Researchers (ANCP) database:FSmales= -20.35 + 0.1305*REA + 0.2633*BF - 0.5901*RF + 0.1139*HH + 0.0056*AGEFSfemales = -11.87 + 0.1316*REA - 0.2457*BF - 0.6218*RF + 0.1139*HH + 0.0009507*AGEThe (co)variance components and genetic parameters were estimated using a linear animal model or a threshold animal model depending on the trait. The heritability estimate for frame score was moderate (0.30). Estimated genetic correlations for reproductive traits were low to moderate (SC365, 0.06; SC450, 0.04; AFC, 0.18; EHP, -0.24; STAY, 0.06; AP, 0.25). The estimates support the notion that larger frame animals are later maturing but have greater lifetime productivity. The new frame score may be a useful tool for genetic selection of animals that are best suited to their environment.
PSVIII-1 Genetic characteristics of Karachaev sheep inferred from genome-wide SNP analysis
Authors: Dotsev Arsen V , Deniskova Tatiana E , Petrov Sergey N , Reyer Henry , Wimmers Klaus , Brem Gottfried , Zinovieva Natalia A 
Published: October 2021

Abstract
Karachaev sheep is a fat-tailed breed from North-Caucasus, Russia. It has good adaptability to local environments and excellent meat quality. The aim of our study was to investigate genetic characteristics of Karachaev sheep and its relationship with other fat-tailed breeds. Samples of Karachaev (n = 22), Lezgin (n = 21), Edilbai (n = 21), Karakul (n = 21), Alai (n = 20), and Gissar (n = 20) breeds were genotyped using Ovine HD BeadChip. For phylogenetic analyses, we additionally included 50K genotypes of Afshari, Awassi, Barki, Chios, Cyprus Fat-Tailed, and Red Maasai breeds. PLINK 1.9 was used for quality control and performing PCA. Genetic diversity parameters were calculated in R package diveRsity. Historical effective population size (Ne) was estimated using SNeP 1.1. Cluster analysis was conducted in Admixture 1.3. TreeMix tree was constructed in TreeMix 1.13. Genetic diversity indices (observed and expected heterozygosity, allelic richness) were highest in Karachaev and Lezgin breeds. Karachaev sheep was phylogenetically closer to Lezgin and Edilbai breeds. Trends in historical Ne were very similar for these breeds. We observed the increased decline in Ne around 20–25 generations ago (which corresponds to 1940s) that can be associated with deportation of Karachaev people to Kazakhstan and Kyrgyzstan in 1943, which resulted in lost almost all of its livestock. TreeMix analysis allowing one migration event revealed gene flow from Karakul to Karachaev/Lezgin nod. Admixture analysis showed the presence in Karachaev sheep of Edilbai and Karakul specific genomic components (~80 and ~20%, respectively). Our study allow suggest that Karachaev breed was extinct during World War II and then was restored in 1960s after Karachaev people returned to their land. It originated from the sheep they brought from Central Asia (Edilbai), and was improved by Karakul breed and local sheep. This work was supported by RSF No. 21-46-00001 (genotyping) and the Russian Ministry of Science and Higher Education No. 0445-2019-0024 (expedition studies).
PSXI-9 Heterotic and breed effects in crossbred lambs
Authors: Jurado Napoleon Vargas , Taylor Bret , Notter David R , Brown Daniel , Lewis Ronald M 
Published: October 2021

Abstract
Given its benefits on animal performance, crossbreeding is common commercially. Genetic evaluation of sheep in the U.S. is performed within breed type (terminal, maternal wool, range, hair). While incorporating crossbred records may improve assessment of purebreds, it requires accounting for heterotic and breed effects in the evaluation. The objectives were to i) determine the generalized effects of direct and maternal heterosis on growth traits of crossbred lambs, and ii) estimate covariance components for direct and maternal additive, and uncorrelated maternal environmental, effects among those traits. Data included body weights (BW) at birth (BN; n = 14395), pre-weaning (WN; n = 9298), weaning (WW; n = 9230), and post-weaning (PW; n = 1593). Mean (SD) BW were 5.3 (1.1), 22.2 (8.7), 39.1 (7.2), and 54.2 (8.7) kg for BN, WN, WW, and PW, respectively. Estimates of heterotic effects and covariance components were obtained using a multiple trait animal model. Genetic effects based on founders’ breeds were included, being significant. Estimates of direct heterosis were 3.04 ± 0.61, 2.62 ± 0.64, 3.99 ± 0.54, and 5.97 ± 0.86%, and estimates of maternal heterosis were 1.86 ± 0.87, 4.42 ± 0.79, 3.69 ± 0.66, and 3.77 ± 0.90%, for BN, WN, WW, and PW, respectively. Direct heritability estimates were 0.17 ± 0.02, 0.13 ± 0.02, 0.18 ± 0.02, and 0.47 ± 0.04 for BN, WN, WW, and PW, respectively. Additive maternal effects defined trivial variation in PW. For BN, WN, and WW, respectively, maternal heritability estimates were 0.17 ± 0.02, 0.10 ± 0.02, and 0.07 ± 0.02. Uncorrelated maternal effects defined little variation in any trait. Direct and maternal heterosis had considerable impact on growth traits, emphasizing the value of crossbreeding and the need to account for heterosis, in addition to breed effects, if crossbred lamb information is included in genetic evaluation.
PSXII-5 Influence of the total content of toxic elements in hair on semen qualitative characteristics of the Holstein sires
Authors: Platonov Stanislav , Frolov Alexey , Kharlamov Anatoly , Zavyalov Oleg 
Published: October 2021

Abstract
It is known that chemical elements affect the quality characteristics of animal sperm. The purpose of this study was to assess the effect of the level of toxic load determined by the concentration of Al, Cd, Pb, Sn, Hg, Sr in wool on the quality characteristics of sperm. The studies were carried out on the Holstein bulls, the age at the selection of biosubstrates is 3–4 years (n = 65), which, based on data according to the amount of toxic elements (∑tox, mmol / kg) in hair, were divided into 3 groups: I - up to the 25th percentile, II - 25–75 percentile, III - above 75 percentile. Parameters evaluated were ejaculate in volume (ml) for 2 adjacent wells, sperm concentration (billions/ml) using a digital photometer, sperm activity (points) using a phase contrast microscope, the number of frozen doses (pcs), on average for the month preceding the selection of hair. Hair samples were taken from the withers in an amount of - 0.4 g. The elemental composition of wool was determined by 6 toxic elements (Al, Cd, Pb, Sn, Hg, Sr) by the AES-ICP and MS-ICP methods. According to the research results, it was established that as ∑tox increases from 0.114 mmol/kg in group I to 0.341 mmol/kg in group III, the volume of ejaculate decreases by 37.1% (Р£0,05), the concentration of sperm by 30.0% (Р£0,001), activity - by 0.2 points (Р£0,05), the number of frozen doses - by 182.4% (Р£0,001). Thus, the results of the studies carried out show the dependence of the quality indicators of sperm on the total content of toxic elements in hair of breeding bulls and it can be used as a diagnostic biosubstrate. The studies were carried out in accordance with the research plan for 2019–2021. FSBSI Federal Research Centre BST RAS (No. 0761-2019-0006).
PSXIV-26 Selection footprints in Russian red cattle identified by linkage disequilibrium blocks based on SNP data
Authors: Sermyagin Alexander A , Dotsev Arsen V , Abdelmanova Alexandra S , Sölkner Johann , Zinovieva Natalia A 
Published: October 2021

Abstract
Among the variety of cattle breeds in Russia, the Russian red dual-purpose cattle breeds have great importance because of their ability to produce high milk yields as well as to provide excellent milk quality. The low census size of the Russian red cattle breeds requires development of programs for conservation of their biodiversity. Our study aimed to investigate selection footprints in Russian red cattle breeds, using high values of linkage disequilibrium (LD) in SNP haplotype blocks as indicators. For finding such LD blocks, we used the genotypes (≈35K SNPs) of Red Gorbatov (RGB, n = 26), Bestuzhev (BST,n = 27), and Suksun (SKS,n = 17) breeds, as well as Red Holstein (RH,n = 16) as an outgroup. Quality control and LD calculations for different distances were performed in Plink 1.90. Top 0.01% SNP pairs by LD value (0.9≤r2&lt; 1.0) were selected for further analysis. The effective population size derived from LD patterns was estimated using SNeP tool. Comparison of LD values for 70 kb interval between breeds and chromosomes by MANOVA pairwise testing significantly distinguished RH/RGB and BST/SKS breeds (P &lt; 0.05-0.001). LD values among chromosomes were 0.195–0.287 for RH, 0.194–0.272 for RGB, 0.172–0.237 for BST, and 0.157–0.217 for SKS. The SKS and BST breeds had higher Ne values (84 and 113, respectively) compared to RH (63) and RGB (79). Selection footprints by LD blocks in Russian red cattle genome covered several relevant genes on BTA1 (EPHA6,DGKG), BTA2 (LRP1B,THSD7B,STAT1), BTA5 (CPM,BAIAP2L2), BTA9 (TRDN,UTRN), BTA10 (KCNN2,CAPN3), BTA11 (SH3RF3,RABGAP1,RALGPS1), BTA14 (ZNF16,ARHGAP39,TOX,DGAT1), and BTA19 (MYH10), BTA22 (FHIT). Detected genes were found to be responsible for milk fat and protein contents, fatty acid composition, somatic cells score, fertility, feet and legs, and udder conformation traits. Our results can be useful for developing the breeding and conservation programs of the Russian red cattle genetic resources. The study was funded by RFBR within project No. 20-516-00020
PSXV-8 The study of feeding behavior traits in connection to feed efficiency in duroc boars bred in Russia
Authors: Belous Anna A , Sermyagin Alexander A , Zinovieva Natalia A 
Published: October 2021

Abstract
The study of feeding behavior is of particular interest because it is directly related to efficiency of feeding. The aim of our study was to determine the genetic parameters of the feeding behavioral traits in Duroc boars (n = 766) in relation to the feed efficiency based on the analysis of variation components. Genstar and Shauer feeders were used to collect the behavioral data, including daily feed intake (DFI), total daily time spent in feeder (TPD), number of daily visits to feeder (NVD), average duration of each visit (TPV), feed intake per visit (FPV), and feed intake rate (FR). Genetic and environmental variabilities were determined by the mixed model equation using the REMLF90 program. Multiple regression analyses were used to adjust feed conversion rate (FCR) for the duration of the testing period, initial and final body weight, and average daily gain. The average initial body weight was 35.7 kg and the duration of testing period was 78.1 days. Actual FCR values reached 2.20 kg/kg with a phenotypic variability of 26.3%. Moderate values of heritability coefficients (h2) were observed for TPV (h2=0.168), FCR (h2=0.214), and DFI (h2=0.221) traits. The heritability parameters for FPV and TPD traits were higher and accounted to 0.269 and 0.290, respectively. The highest value of h2 was observed for NVD (0.494). Analyses of genetic correlations revealed several interesting findings. The boars, which more often visited feeding stations, spent more time in feeder (r2=+0.536 for NVD/TPD), herewith duration of each visit and feed intake rate were decreased (r2=–0.593 and –0.760 for NVD/TPV and NVD/FR, respectively). Feed conversion rate was positively correlated with TPD (r2=+0.530) and negatively correlated with FR (r2=–0,772). Our research results will be useful for development of artificial selection programs to select Duroc pigs for increased feeding efficiency. The study was supported by RFBR No19-316–90008.
PSX-B-26 Mitotic activity of immune cells in the intestines of piglets in the treatment of gastrointestinal pathology
Authors: Parshin Pavel , Sashnina Larisa , Mikhailov Evgenii , Shabunin Boris , Vorotnikova Svetlana 
Published: October 2021

Abstract
The study aimed to evaluate the effect of a drug based on the granulocyte-macrophage colony-stimulating factor (GM-CSF) on intestinal immune cells’ mitotic activity in treating gastrointestinal pathology. Two groups of 40 sick piglets with diarrhea at the age of 5–7 days were formed. The 1st group was the control. Animals of the 2nd group received an intramuscular injection of “Quinokol”(enrofloxacin) at a dose of 0.5 ml / 10 kg once a day for 5 days. The 3d - “Quinokol” at the same dose combined with GM-CSF at a dose of 0.1 ml/kg twice with an interval of 48 hours. From forcedly slaughtered piglets (by Directive 93/119 / EC) with the diarrheal syndrome (n = 4) and from animals of the experimental groups (n = 4), duodenum sites were taken for research. Immunohistochemical study of Ki-67 expression with additional staining with hematoxylin Karratsi was carried out according to the method described by V. Stafford. Cell counting and morphometric changes were performed using the ImageJ software. In preparations from sick piglets and piglets, which were used “Quinokol”, the main mitotic activity was 0.0036 ± 0.00047 and 0.0041 ± 0.00054 mitoses / μm2, respectively (fig 1 - A). Single Ki-67-positive cells were found in the stroma of the villi, vascular walls, and submucosa. In some areas, the bean or rod-shaped nucleus of Ki-67 positive cells was distinguished. At the samples from the 3d group (fig 1 - C, D), a sharp increase in the mitotic activity of immune cells in the stroma of the villi was noted - 0.0067 ± 0.00072 mitoses/μm2 and significantly more than in the 1st and 2nd groups by 64% and 86%, respectively (P &lt; 0.001). The combined use of “Quinokol” with GMC-SF increased cell hyperplasia in the villous stroma, which indicates the activation of local intestinal immunity.
PSI-13 Effects of maternal nutrient restriction and melatonin supplementation on fetal mammary gland vascularity
Authors: DeShazo Emily K , Contreras-Correa Zully E , Sessums Robin , Duncan Thomas H , Lemley Caleb 
Published: October 2021

Abstract
The objective was to determine fetal mammary gland vascularity following dietary melatonin supplementation in late pregnant nutrient restricted Brangus heifers carrying female fetuses from two different seasons (spring calving, n = 12; fall calving, n = 13). Heifers were assigned one of four nutritional treatments at day 160 of gestation; adequate fed (ADQ-CON; 100% NRC; n = 6), nutrient restricted (RES-CON; 60% NRC; n = 6), adequate fed with 20 mg of melatonin (ADQ-MEL; n = 6), and nutrient restricted with 20 mg of melatonin (RES-MEL; n = 7). Fetal mammary glands were collected at day 240 of gestation following Cesarean delivery. Mammary gland vascularity was determined via immunofluorescence staining and analyzed via ANOVA. In spring calving heifers, maternal body weight was decreased (P = 0.002) in RES (528±11 kg) vs ADQ (601±11 kg) fed. Fetal body weight, fetal mammary gland weight, and mammary gland vascularity were not different (P &gt; 0.15) among treatments. In fall calving heifers, a nutrition by treatment interaction (P = 0.048) was observed for maternal body weight, which was increased in ADQ-MEL versus all groups. Fetal body weight and fetal mammary gland weight were not different (P &gt; 0.45) among groups. In fall calving, fetal mammary gland capillary number and average size were not different (P &gt; 0.40) among groups. However, a nutrition by treatment interaction was observed for capillary area (P = 0.05), which was increased in RES-MEL versus ADQ-MEL. In addition, a nutrition by treatment interaction was observed for capillary perimeter (P = 0.001), which was increased in RES-MEL versus all groups. Overall, maternal nutrient restriction and melatonin supplementation did not impact fetal mammary gland vascularity in spring calving heifers; however, melatonin supplementation during nutrient restriction in fall calving heifers may increase fetal mammary gland vascularity. In conclusion, seasonal differences and natural melatonin production may influence melatonin-induced changes in fetal development.