bluuebunny/crossref_metadata_2025_split huggingface dataset:
Forest defoliator outbreaks alter nutrient cycling in northern waters
Authors: Woodman Samuel G. , Khoury Sacha , Fournier Ronald E. , Emilson Erik J. S. , Gunn John M. , Rusak James A. , Tanentzap Andrew J. 
Published: November 2021

AbstractInsect defoliators alter biogeochemical cycles from land into receiving waters by consuming terrestrial biomass and releasing biolabile frass. Here, we related insect outbreaks to water chemistry across 12 boreal lake catchments over 32-years. We report, on average, 27% lower dissolved organic carbon (DOC) and 112% higher dissolved inorganic nitrogen (DIN) concentrations in lake waters when defoliators covered entire catchments and reduced leaf area. DOC reductions reached 32% when deciduous stands dominated. Within-year changes in DOC from insect outbreaks exceeded 86% of between-year trends across a larger dataset of 266 boreal and north temperate lakes from 1990 to 2016. Similarly, within-year increases in DIN from insect outbreaks exceeded local, between-year changes in DIN by 12-times, on average. As insect defoliator outbreaks occur at least every 5 years across a wider 439,661 km2boreal ecozone of Ontario, we suggest they are an underappreciated driver of biogeochemical cycles in forest catchments of this region.
Aerosol-boundary-layer-monsoon interactions amplify semi-direct effect of biomass smoke on low cloud formation in Southeast Asia
Authors: Ding Ke , Huang Xin , Ding Aijun , Wang Minghuai , Su Hang , Kerminen Veli-Matti , Petäjä Tuukka , Tan Zhemin , Wang Zilin , Zhou Derong , Sun Jianning , Liao Hong , Wang Huijun , Carslaw Ken , Wood Robert , Zuidema Paquita , Rosenfeld Daniel , Kulmala Markku , Fu Congbin , Pöschl Ulrich , Cheng Yafang , Andreae Meinrat O. 
Published: November 2021

AbstractLow clouds play a key role in the Earth-atmosphere energy balance and influence agricultural production and solar-power generation. Smoke aloft has been found to enhance marine stratocumulus through aerosol-cloud interactions, but its role in regions with strong human activities and complex monsoon circulation remains unclear. Here we show that biomass burning aerosols aloft strongly increase the low cloud coverage over both land and ocean in subtropical southeastern Asia. The degree of this enhancement and its spatial extent are comparable to that in the Southeast Atlantic, even though the total biomass burning emissions in Southeast Asia are only one-fifth of those in Southern Africa. We find that a synergetic effect of aerosol-cloud-boundary layer interaction with the monsoon is the main reason for the strong semi-direct effect and enhanced low cloud formation in southeastern Asia.
A molecular vision of fungal cell wall organization by functional genomics and solid-state NMR
Authors: Chakraborty Arnab , Fernando Liyanage D. , Fang Wenxia , Dickwella Widanage Malitha C. , Wei Pingzhen , Jin Cheng , Fontaine Thierry , Latgé Jean-Paul , Wang Tuo 
Published: November 2021

AbstractVast efforts have been devoted to the development of antifungal drugs targeting the cell wall, but the supramolecular architecture of this carbohydrate-rich composite remains insufficiently understood. Here we compare the cell wall structure of a fungal pathogen Aspergillus fumigatus and four mutants depleted of major structural polysaccharides. High-resolution solid-state NMR spectroscopy of intact cells reveals a rigid core formed by chitin, β-1,3-glucan, and α-1,3-glucan, with galactosaminogalactan and galactomannan present in the mobile phase. Gene deletion reshuffles the composition and spatial organization of polysaccharides, with significant changes in their dynamics and water accessibility. The distribution of α-1,3-glucan in chemically isolated and dynamically distinct domains supports its functional diversity. Identification of valines in the alkali-insoluble carbohydrate core suggests a putative function in stabilizing macromolecular complexes. We propose a revised model of cell wall architecture which will improve our understanding of the structural response of fungal pathogens to stresses.
Oral prodrug of remdesivir parent GS-441524 is efficacious against SARS-CoV-2 in ferrets
Authors: Cox Robert M. , Wolf Josef D. , Lieber Carolin M. , Sourimant Julien , Lin Michelle J. , Babusis Darius , DuPont Venice , Chan Julie , Barrett Kim T. , Lye Diane , Kalla Rao , Chun Kwon , Mackman Richard L. , Ye Chengjin , Cihlar Tomas , Martinez-Sobrido Luis , Greninger Alexander L. , Bilello John P. , Plemper Richard K. 
Published: November 2021

AbstractRemdesivir is an antiviral approved for COVID-19 treatment, but its wider use is limited by intravenous delivery. An orally bioavailable remdesivir analog may boost therapeutic benefit by facilitating early administration to non-hospitalized patients. This study characterizes the anti-SARS-CoV-2 efficacy of GS-621763, an oral prodrug of remdesivir parent nucleoside GS-441524. Both GS-621763 and GS-441524 inhibit SARS-CoV-2, including variants of concern (VOC) in cell culture and human airway epithelium organoids. Oral GS-621763 is efficiently converted to plasma metabolite GS-441524, and in lungs to the triphosphate metabolite identical to that generated by remdesivir, demonstrating a consistent mechanism of activity. Twice-daily oral administration of 10 mg/kg GS-621763 reduces SARS-CoV-2 burden to near-undetectable levels in ferrets. When dosed therapeutically against VOC P.1 gamma γ, oral GS-621763 blocks virus replication and prevents transmission to untreated contact animals. These results demonstrate therapeutic efficacy of a much-needed orally bioavailable analog of remdesivir in a relevant animal model of SARS-CoV-2 infection.
Temporal changes in anthropogenic seismic noise levels associated with economic and leisure activities during the COVID-19 pandemic
Authors: Nimiya Hiro , Ikeda Tatsunori , Tsuji Takeshi 
Published: November 2021

AbstractSeismic ambient noise with frequencies > 1 Hz includes noise related to human activities. A reduction in seismic noise during the COVID-19 pandemic has been observed worldwide, as restrictions were imposed to control outbreaks of the SARS-CoV-2 virus. In this context, we studied the effect of changes in anthropogenic activities during COVID-19 on the seismic noise levels in the Tokyo metropolitan area, Japan, considering time of day, day of the week, and seasonal changes. The results showed the largest reduction in noise levels during the first state of emergency under most conditions. After the first state of emergency was lifted, the daytime noise reverted to previous levels immediately on weekdays and gradually on Sundays. This was likely because economic activities instantly resumed, while non-essential outings on Sundays were still mostly avoided. Furthermore, the daytime noise level on Sundays was strongly reduced regardless of changes on weekdays after the second state of emergency, which restricted activities mainly at night. Sunday noise levels gradually increased from the middle of the second state of emergency, suggesting a gradual reduction in public concern about COVID-19 following a decrease in the number of infections. Our findings demonstrate that seismic noise can be used to monitor social activities.
Excluding false negative error in certification of quantum channels
Authors: Krawiec Aleksandra , Pawela Łukasz , Puchała Zbigniew 
Published: November 2021

AbstractCertification of quantum channels is based on quantum hypothesis testing and involves also preparation of an input state and choosing the final measurement. This work primarily focuses on the scenario when the false negative error cannot occur, even if it leads to the growth of the probability of false positive error. We establish a condition when it is possible to exclude false negative error after a finite number of queries to the quantum channel in parallel, and we provide an upper bound on the number of queries. On top of that, we found a class of channels which allow for excluding false negative error after a finite number of queries in parallel, but cannot be distinguished unambiguously. Moreover, it will be proved that parallel certification scheme is always sufficient, however the number of steps may be decreased by the use of adaptive scheme. Finally, we consider examples of certification of various classes of quantum channels and measurements.
Home advantage mediated (HAM) by referee bias and team performance during covid
Authors: Bilalić Merim , Gula Bartosz , Vaci Nemanja 
Published: November 2021

AbstractThe fans’ importance in sports is acknowledged by the term ‘the 12th man’, a figurative extra player for the home team. Sport teams are indeed more successful when they play in front of their fans than when they play away. The supposed mechanism behind this phenomenon, termed Home Advantage (HA), is that fans’ support spurs home players to better performance and biases referees, which in turn determines the outcome. The inference about the importance of fans’ support is, however, indirect as there is normally a 12th man of this kind, even if it is an opponent’s. The current pandemic, which forced sporting activities to take place behind closed doors, provides the necessary control condition. Here we employ a novel conceptual HA model on a sample of over 4000 soccer matches from 12 European leagues, some played in front of spectators and some in empty stadia, to demonstrate that fans are indeed responsible for the HA. However, the absence of fans reduces the HA by a third, as the home team’s performance suffers and the officials’ bias disappears. The current pandemic reveals that the figurative 12th man is no mere fan hyperbole, but is in fact the most important player in the home team.
Defluorination and adsorption of tetrafluoroethylene (TFE) on TiO2(110) and Cr2O3(0001)
Authors: Gueriba Jessiel Siaron , Salehuddin Nur Ellina Annisa , Diño Wilson Agerico , Washika Kiminori , Nakamura Hiroshi , Kawafuchi Tatsumi 
Published: November 2021

AbstractHere, we show that metal oxide surfaces catalyze the formation of intermediate defluorinated tetrafluoroethylene (TFE) radicals, resulting in enhanced binding on the corresponding metal oxide surfaces. We attribute the preferential adsorption and radical formation of TFE on Cr2O3(0001) relative to TiO2(110) to the low oxygen coordination of Cr surface atoms. This hints at a possible dependence of the TFE binding strength to the surface stoichiometry of metal-oxide surfaces.
High quality VO2 thin films synthesized from V2O5 powder for sensitive near-infrared detection
Authors: Guo Xitao , Tan Yonghao , Hu Yupei , Zafar Zainab , Liu Jun , Zou Jijun 
Published: November 2021

AbstractVapor transport method has been successfully used to synthesize high quality VO2 thin films on SiO2/Si substrate using V2O5 as a precursor in an inert-gas environment. The morphological and structural evolutions of the intermediate phases during the nucleation and growth processes were investigated by SEM and Raman spectroscopy, respectively. The results showed that the conversion of V2O5 powder to VO2 thin films was dominated by a melting-evaporation-nucleation-growth mechanism. Further characterization results demonstrated that the high quality crystals of monoclinic VO2 thin films exhibit a sharp resistance change up to 4 orders of magnitude. In addition, the VO2 thin films exhibited good near-infrared response, high stability, and reproducibility under ambient conditions, which should be promising for sensitive near-infrared detection. Our work not only provided a simple and direct approach to synthesize high quality VO2 thin films with distinct phase transition properties but also demonstrated the possible infrared sensing application in the future.
Boosting the resolution of multidimensional NMR spectra by complete removal of proton spin multiplicities
Authors: Sakhaii Peyman , Bohorc Bojan , Schliedermann Uwe , Bermel Wolfgang 
Published: November 2021

AbstractOver decades multidimensional NMR spectroscopy has become an indispensable tool for structure elucidation of natural products, peptides and medium sized to large proteins. Heteronuclear single quantum coherence (HSQC) spectroscopy is one of the work horses in that field often used to map structural connectivity between protons and carbons or other hetero nuclei. In overcrowded HSQC spectra, proton multiplet structures of cross peaks set a limit to the power of resolution and make a straightforward assignment difficult. In this work, we provide a solution to improve these penalties by completely removing the proton spin multiplet structure of HSQC cross peaks. Previously reported sideband artefacts are diminished leading to HSQC spectra with singlet responses for all types of proton multiplicities. For sideband suppression, the idea of restricted random delay (RRD) in chunk interrupted data acquisition is introduced and exemplified. The problem of irreducible residual doublet splitting of diastereotopic CH2 groups is simply solved by using a phase sensitive JRES approach in conjunction with echo processing and real time broadband homodecoupling (BBHD) HSQC, applied as a 3D experiment. Advantages and limitations of the method is presented and discussed.
Association between thyroid hormones and insulin resistance indices based on the Korean National Health and Nutrition Examination Survey
Authors: Choi Yun Mi , Kim Min Kyung , Kwak Mi Kyung , Kim Dooman , Hong Eun-Gyoung 
Published: November 2021

AbstractThyroid dysfunction has been implicated as a potential pathophysiological factor in glucose homeostasis and insulin resistance (IR). This study aimed to identify the correlation between thyroid dysfunction and IR. We used data from the sixth Korean National Health and Nutrition Examination Survey to evaluate a total of 5727 participants. The triglyceride glucose (TyG) index and homeostasis model assessment of insulin resistance (HOMA-IR) were calculated to represent IR. Correlation analysis was performed between thyroid dysfunction and IR. The log-transformed TSH (LnTSH) and free T4 were significantly correlated with the TyG index (TSH, beta coefficient 0.025, 95% confidence interval [CI] 0.014–0.036, p < 0.001; free T4, − 0.110 (− 0.166 to − 0.054), p < 0.001) but not HOMA-IR. Overt hypothyroidism is correlated with increased TyG index in pre-menopausal females (0.215 (0.122–0.309) p < 0.001). On the other hand, overt hyperthyroidism is correlated with increased HOMA-IR in males (0.304 (0.193–0.416), p < 0.001) and post-menopausal females (1.812 (1.717–1.907), p < 0.001). In euthyroid subjects, LnTSH and TyG index were significantly correlated in females. In conclusion, both hyperthyroidism and hypothyroidism might be associated with IR but by different mechanisms. It might be helpful to assess IR with appropriate indexes in patients with thyroid dysfunction.
Shortwave infrared hyperspectral imaging as a novel method to elucidate multi-phase dolomitization, recrystallization, and cementation in carbonate sedimentary rocks
Authors: McCormick Cole A. , Corlett Hilary , Stacey Jack , Hollis Cathy , Feng Jilu , Rivard Benoit , Omma Jenny E. 
Published: November 2021

AbstractCarbonate rocks undergo low-temperature, post-depositional changes, including mineral precipitation, dissolution, or recrystallisation (diagenesis). Unravelling the sequence of these events is time-consuming, expensive, and relies on destructive analytical techniques, yet such characterization is essential to understand their post-depositional history for mineral and energy exploitation and carbon storage. Conversely, hyperspectral imaging offers a rapid, non-destructive method to determine mineralogy, while also providing compositional and textural information. It is commonly employed to differentiate lithology, but it has never been used to discern complex diagenetic phases in a largely monomineralic succession. Using spatial-spectral endmember extraction, we explore the efficacy and limitations of hyperspectral imaging to elucidate multi-phase dolomitization and cementation in the Cathedral Formation (Western Canadian Sedimentary Basin). Spectral endmembers include limestone, two replacement dolomite phases, and three saddle dolomite phases. Endmember distributions were mapped using Spectral Angle Mapper, then sampled and analyzed to investigate the controls on their spectral signatures. The absorption-band position of each phase reveals changes in %Ca (molar Ca/(Ca + Mg)) and trace element substitution, whereas the spectral contrast correlates with texture. The ensuing mineral distribution maps provide meter-scale spatial information on the diagenetic history of the succession that can be used independently and to design a rigorous sampling protocol.
Spatio-temporal prediction of the COVID-19 pandemic in US counties: modeling with a deep LSTM neural network
Authors: Nikparvar Behnam , Rahman Md. Mokhlesur , Hatami Faizeh , Thill Jean-Claude 
Published: November 2021

AbstractPrediction of complex epidemiological systems such as COVID-19 is challenging on many grounds. Commonly used compartmental models struggle to handle an epidemiological process that evolves rapidly and is spatially heterogeneous. On the other hand, machine learning methods are limited at the beginning of the pandemics due to small data size for training. We propose a deep learning approach to predict future COVID-19 infection cases and deaths 1 to 4 weeks ahead at the fine granularity of US counties. The multi-variate Long Short-term Memory (LSTM) recurrent neural network is trained on multiple time series samples at the same time, including a mobility series. Results show that adding mobility as a variable and using multiple samples to train the network improve predictive performance both in terms of bias and of variance of the forecasts. We also show that the predicted results have similar accuracy and spatial patterns with a standard ensemble model used as benchmark. The model is attractive in many respects, including the fine geographic granularity of predictions and great predictive performance several weeks ahead. Furthermore, data requirement and computational intensity are reduced by substituting a single model to multiple models folded in an ensemble model.
PER2 mediates CREB-dependent light induction of the clock gene Per1
Authors: Brenna Andrea , Ripperger Jürgen A. , Saro Gabriella , Glauser Dominique A. , Yang Zhihong , Albrecht Urs 
Published: November 2021

AbstractLight affects many physiological processes in mammals such as entrainment of the circadian clock, regulation of mood, and relaxation of blood vessels. At the molecular level, a stimulus such as light initiates a cascade of kinases that phosphorylate CREB at various sites, including serine 133 (S133). This modification leads CREB to recruit the co-factor CRCT1 and the histone acetyltransferase CBP to stimulate the transcription of genes containing a CRE element in their promoters, such as Period 1 (Per1). However, the details of this pathway are poorly understood. Here we provide evidence that PER2 acts as a co-factor of CREB to facilitate the formation of a transactivation complex on the CRE element of the Per1 gene regulatory region in response to light or forskolin. Using in vitro and in vivo approaches, we show that PER2 modulates the interaction between CREB and its co-regulator CRTC1 to support complex formation only after a light or forskolin stimulus. Furthermore, the absence of PER2 abolished the interaction between the histone acetyltransferase CBP and CREB. This process was accompanied by a reduction of histone H3 acetylation and decreased recruitment of RNA Pol II to the Per1 gene. Collectively, our data show that PER2 supports the stimulus-dependent induction of the Per1 gene via modulation of the CREB/CRTC1/CBP complex.
Molecular species delimitation refines the taxonomy of native and nonnative physinine snails in North America
Authors: Young Michael K. , Smith Rebecca , Pilgrim Kristine L. , Schwartz Michael K. 
Published: November 2021

AbstractBeing able to associate an organism with a scientific name is fundamental to our understanding of its conservation status, ecology, and evolutionary history. Gastropods in the subfamily Physinae have been especially troublesome to identify because morphological variation can be unrelated to interspecific differences and there have been widespread introductions of an unknown number of species, which has led to a speculative taxonomy. To resolve uncertainty about species diversity in North America, we targeted an array of single-locus species delimitation methods at publically available specimens and new specimens collected from the Snake River basin, USA to generate species hypotheses, corroborated using nuclear analyses of the newly collected specimens. A total-evidence approach delineated 18 candidate species, revealing cryptic diversity within recognized taxa and a lack of support for other named taxa. Hypotheses regarding certain local endemics were confirmed, as were widespread introductions, including of an undescribed taxon likely belonging to a separate genus in southeastern Idaho for which the closest relatives are in southeast Asia. Overall, single-locus species delimitation was an effective first step toward understanding the diversity and distribution of species in Physinae and to guiding future investigation sampling and analyses of species hypotheses.
Modulation of spin-torque ferromagnetic resonance with a nanometer-thick platinum by ionic gating
Authors: Ohshima Ryo , Kohsaka Yuto , Ando Yuichiro , Shinjo Teruya , Shiraishi Masashi 
Published: November 2021

AbstractThe spin Hall effect (SHE) and inverse spin Hall effect (ISHE) have played central roles in modern condensed matter physics especially in spintronics and spin-orbitronics, and much effort has been paid to fundamental and application-oriented research towards the discovery of novel spin–orbit physics and the creation of novel spintronic devices. However, studies on gate-tunability of such spintronics devices have been limited, because most of them are made of metallic materials, where the high bulk carrier densities hinder the tuning of physical properties by gating. Here, we show an experimental demonstration of the gate-tunable spin–orbit torque in Pt/Ni80Fe20 (Py) devices by controlling the SHE using nanometer-thick Pt with low carrier densities and ionic gating. The Gilbert damping parameter of Py and the spin-memory loss at the Pt/Py interface were modulated by ionic gating to Pt, which are compelling results for the successful tuning of spin–orbit interaction in Pt.
Separation of Gagua Rise from Great Benham Rise in the West Philippine Basin during the Middle Eocene
Authors: Yeh Yi-Ching , Lin Jing-Yi , Hsu Shu-Kun , Tsai Ching-Hui , Chang Ching-Min 
Published: November 2021

AbstractThe West Philippine Basin (WPB) has started opening at ~ 58 Ma and ceased spreading at ~ 33 Ma, developing a fast spreading (~ 44 mm/yr half-spreading rate) magmatic episode between 58 and 41 Ma and the second amagmatic episode between 41 and 33 Ma. The occurrence of the first stage of spreading is closely related to the Oki-Daito mantle plume and related Benham Rise (BR) and Urdaneta Plateau (UP) activity. To the east of the Luzon–Okinawa Fracture Zone (LOFZ), BR was the most active volcanism from 48 to 41 Ma. The geomagnetic ages on both sides of the LOFZ have been determined; however, their causal relationship and evolution in the WPB remain unclear. In this study, we performed integrated analyses of multichannel seismic data and swath bathymetry data for the area to the west of the LOFZ. To the west of the LOFZ, the Gagua Rise (GR), is identified by a high residual free-air gravity anomaly, volcanic seamount chains and an overlapping spreading center. The GR is located at magnetic isochrons C20/C22 (50 to 44 Ma) and shows a thick oceanic crust of at least 12.7 km. We first propose an oceanic plateau named Great Benham Rise (GBR) which includes GR, UP and BR. We infer that the GR was a portion of the GBR since ~ 49 Ma and was separated from the GBR at ~ 41 Ma by the right-lateral LOFZ motion. Later, the relict GBR magmatism only continued in the area to the east of the LOFZ. Overall, the GBR dominates the spreading history of the WPB.