bluuebunny/crossref_metadata_2025_split huggingface dataset:
A comparison of time to event analysis methods, using weight status and breast cancer as a case study
Authors: Aivaliotis Georgios , Palczewski Jan , Atkinson Rebecca , Cade Janet E. , Morris Michelle A. 
Published: July 2021

AbstractSurvival analysis with cohort study data has been traditionally performed using Cox proportional hazards models. Random survival forests (RSFs), a machine learning method, now present an alternative method. Using the UK Women’s Cohort Study (n = 34,493) we evaluate two methods: a Cox model and an RSF, to investigate the association between Body Mass Index and time to breast cancer incidence. Robustness of the models were assessed by cross validation and bootstraping. Histograms of bootstrap coefficients are reported. C-Indices and Integrated Brier Scores are reported for all models. In post-menopausal women, the Cox model Hazard Ratios (HR) for Overweight (OW) and Obese (O) were 1.25 (1.04, 1.51) and 1.28 (0.98, 1.68) respectively and the RSF Odds Ratios (OR) with partial dependence on menopause for OW and O were 1.34 (1.31, 1.70) and 1.45 (1.42, 1.48). HR are non-significant results. Only the RSF appears confident about the effect of weight status on time to event. Bootstrapping demonstrated Cox model coefficients can vary significantly, weakening interpretation potential. An RSF was used to produce partial dependence plots (PDPs) showing OW and O weight status increase the probability of breast cancer incidence in post-menopausal women. All models have relatively low C-Index and high Integrated Brier Score. The RSF overfits the data. In our study, RSF can identify complex non-proportional hazard type patterns in the data, and allow more complicated relationships to be investigated using PDPs, but it overfits limiting extrapolation of results to new instances. Moreover, it is less easily interpreted than Cox models. The value of survival analysis remains paramount and therefore machine learning techniques like RSF should be considered as another method for analysis.
A high plane of nutrition during early life alters the hypothalamic transcriptome of heifer calves
Authors: Sánchez José M. , Keogh Kate , Kelly Alan K. , Byrne Colin J. , Lonergan Pat , Kenny David A. 
Published: July 2021

AbstractThe aim was to examine the effect of rapid body weight gain during early calfhood consistent with earlier sexual development on the transcriptional profile of the hypothalamus. Angus X Holstein–Friesian heifer calves (19 ± 5 days of age) were offered a high (HI, n = 14) or moderate (MOD, n = 15) plane of nutrition from 3 to 21 weeks of age to achieve a growth rate of 1.2 kg/d and 0.5 kg/d, respectively. Following euthanasia at 21 weeks, the arcuate nucleus (ARC) region was separated from the remainder of the hypothalamus and both were subjected to RNA-Seq. HI calves exhibited altered expression of 80 and 39 transcripts in the ARC and the remaining hypothalamus, respectively (P < 0.05) including downregulation of AGRP and NPY and upregulation of POMC, previously implicated in precocious sexual development. Stress-signaling pathways were amongst the most highly dysregulated. Organ morphology, reproductive system development and function, and developmental disorder were amongst the networks derived from differentially expressed genes (DEGs) in the ARC. Gene co-expression analysis revealed DEGs within the ARC (POMC, CBLN2, CHGA) and hypothalamus (PENK) as hub genes. In conclusion, enhanced nutrition during early calfhood alters the biochemical regulation of the hypothalamus consistent with advanced sexual development in the prepubertal heifer.
Depression predictions from GPS-based mobility do not generalize well to large demographically heterogeneous samples
Authors: Müller Sandrine R. , Chen Xi , Peters Heinrich , Chaintreau Augustin , Matz Sandra C. 
Published: July 2021

AbstractDepression is one of the most common mental health issues in the United States, affecting the lives of millions of people suffering from it as well as those close to them. Recent advances in research on mobile sensing technologies and machine learning have suggested that a person’s depression can be passively measured by observing patterns in people’s mobility behaviors. However, the majority of work in this area has relied on highly homogeneous samples, most frequently college students. In this study, we analyse over 57 million GPS data points to show that the same procedure that leads to high prediction accuracy in a homogeneous student sample (N = 57; AUC = 0.82), leads to accuracies only slightly higher than chance in a U.S.-wide sample that is heterogeneous in its socio-demographic composition as well as mobility patterns (N = 5,262; AUC = 0.57). This pattern holds across three different modelling approaches which consider both linear and non-linear relationships. Further analyses suggest that the prediction accuracy is low across different socio-demographic groups, and that training the models on more homogeneous subsamples does not substantially improve prediction accuracy. Overall, the findings highlight the challenge of applying mobility-based predictions of depression at scale.
Scientists have favorable opinions on immunity certificates but raise concerns regarding fairness and inequality
Authors: Aranzales Iván , Chan Ho Fai , Eichenberger Reiner , Hegselmann Rainer , Stadelmann David , Torgler Benno 
Published: July 2021

AbstractDuring the first wave of the COVID-19 pandemic, we collected over 12,000 responses from a survey of scientists, who were asked to express their opinions on immunity certificates (also called “immunity passports”) as a potential instrument to lessen the impact of the crisis. Overall, we find that scientists perceive immunity certificates as favorable for public health (50.2%) and the state of the economy (54.4%) while one-fifth (19.1%) and one-sixth (15.4%) disagree. Scientists stipulate some concerns about fairness (36.5%) and inequality (22.4%) arising from implementation of immunity certification. We find some smaller differences among scientific fields, particularly between health scientists and social scientists, with the latter being slightly more positive about the effect of immunity certification. Scholars in the United States, including health scientists, are more likely to view the immunity certificates favorably and mention fewer concerns about this policy’s effect on fairness and inequality. Female scholars are significantly less in favor of immunity certificates, while scientists with more conservative political views hold more favorable opinions. Our results reveal that given the uncertainties during an early phase of a pandemic, scientists see scope for immunity certification to lessen the general societal impacts of the crisis.
Cardiac and skeletal muscle predictors of impaired cardiorespiratory fitness post-anthracycline chemotherapy for breast cancer
Authors: Kirkham Amy A. , Haykowsky Mark J. , Beaudry Rhys I. , Grenier Justin G. , Mackey John R. , Pituskin Edith , Paterson D. Ian , Thompson Richard B. 
Published: July 2021

AbstractThis study aimed to characterize peak exercise cardiac function and thigh muscle fatty infiltration and their relationships with VO2peak among anthracycline-treated breast cancer survivors (BCS). BCS who received anthracycline chemotherapy ~ 1 year earlier (n = 16) and matched controls (matched-CON, n = 16) were enrolled. Resting and peak exercise cardiac function, myocardial T1mapping (marker of fibrosis), and thigh muscle fat infiltration were assessed by magnetic resonance imaging, and VO2peak by cycle test. Compared to matched-CON, BCS had lower peak SV (64 ± 9 vs 57 ± 10 mL/m2, p = 0.038), GLS (− 30.4 ± 2.2 vs − 28.0 ± 2.5%, p = 0.008), and arteriovenous oxygen difference (16.4 ± 3.6 vs 15.2 ± 3.9 mL/100 mL, p = 0.054). Mediation analysis showed: (1) greater myocardial T1time (fibrosis) is inversely related to cardiac output and end-systolic volume exercise reserve; (2) greater thigh muscle fatty infiltration is inversely related to arteriovenous oxygen difference; both of which negatively influence VO2peak. Peak SV (R2 = 65%) and thigh muscle fat fraction (R2 = 68%) were similarly strong independent predictors of VO2peak in BCS and matched-CON combined. Post-anthracyclines, myocardial fibrosis is associated with impaired cardiac reserve, and thigh muscle fatty infiltration is associated with impaired oxygen extraction, which both contribute to VO2peak.
The relation between childhood adversity and adult obesity in a population-based study in women and men
Authors: Fleischer Toni , Ulke Christine , Beutel Manfred , Binder Harald , Brähler Elmar , Johar Hamimatunnisa , Atasoy Seryan , Kruse Johannes , Otten Daniëlle , Tibubos Ana N. , Zöller Daniela , Speerforck Sven , Grabe Hans J. , Ladwig Karl-Heinz , Schomerus Georg 
Published: July 2021

AbstractChildhood maltreatment has been shown to relate to adult obesity. In this epidemiological study, we investigate the association between childhood maltreatment and waist-to-height-ratio (WHtR) in a sample of the German adult population, comprising of N = 2936 participants. WHtR, an indicator for risk of obesity, was the primary outcome. Childhood maltreatment was assessed by the Childhood Trauma Screener (CTS), which assesses emotional and physical neglect, abuse as well as sexual abuse. Cohort-data were harmonized and analyzed within DataSHIELD. We used multivariable regression models to estimate the association of childhood maltreatment and WHtR at different levels of adjustments for potential confounders. Overall childhood maltreatment was associated with a higher WHtR in both sexes (women: p = 0.004, men: p < 0.001); associations were no longer significant in women after adding socioeconomic variables, but remained significant in men (p = 0.013). Additionally, we were able to identify sex specific patterns for childhood maltreatment predicting the WHtR. Emotional neglect and abuse had stronger impacts on the WHtR in women than in men, whereas physical neglect and abuse had stronger impacts in men. To our knowledge, this is the first comprehensive population-based study testing various types of childhood maltreatment with WHtR in sex-, region- and weight-stratified analyses. Future studies in clinical populations are warranted to examine U-shaped correlations between increased WHtR and childhood maltreatment.
Taphonomic and spatial analyses from the Early Pleistocene site of Venta Micena 4 (Orce, Guadix-Baza Basin, southern Spain)
Authors: Luzón Carmen , Yravedra Jose , Courtenay Lloyd A. , Saarinen Juha , Blain Hugues-Alexandre , DeMiguel Daniel , Viranta Suvi , Azanza Beatriz , Rodríguez-Alba Juan José , Herranz-Rodrigo Darío , Serrano-Ramos Alexia , Solano Jose A. , Oms Oriol , Agustí Jordi , Fortelius Mikael , Jiménez-Arenas Juan Manuel 
Published: July 2021

AbstractVenta Micena is an area containing several palaeontological sites marking the beginning of the Calabrian stage (Early Pleistocene). The richness of the fossil accumulation including species of Asian, African and European origin, makes Venta Micena a key site for the the palaeoecological and palaeoenvironmental study of southern Europe during the Early Pleistocene. Thus, research has been focused on Venta Micena 3, which was originally interpreted as a single palaeosurface associated with a marshy context, in which most of the fauna was accumulated byPachycrocuta brevirostris. Recent excavations have unearthed a new site, Venta Micena 4, located in the same stratigraphic unit (Unit C) and in close proximity to Venta Micena 3. Here we show the first analyses regarding the taphonomic and spatial nature of this new site, defining two stratigraphic boundaries corresponding to two different depositional events. Furthermore, the taphonomic analyses of fossil remains seem to indicate a different accumulative agent thanPachycrocuta, thus adding more complexity to the palaeobiological interpretation of the Venta Micena area. These results contribute to the discussion of traditional interpretations made from Venta Micena 3.
Effects of steam sterilization on reduction of fungal colony forming units, cannabinoids and terpene levels in medical cannabis inflorescences
Authors: Jerushalmi Shachar , Maymon Marcel , Dombrovsky Aviv , Regev Rafi , Schmilovitch Ze’ev , Namdar Dvora , Shalev Nurit , Koltai Hinanit , Freeman Stanley 
Published: July 2021

AbstractMedical cannabis (MC) production is a rapidly expanding industry. Over the past ten years, many additional phytocannabinoids have been discovered and used for different purposes. MC was reported beneficial for the treatment of a variety of clinical conditions such as analgesia, multiple sclerosis, spinal cord injuries, Tourette's syndrome, epilepsy, glaucoma, Parkinson disease and more. Yet, there is still a major lack of research and knowledge related to MC plant diseases, both at the pre- and postharvest stages. Many of the fungi that infect MC, such as Aspergillus and Penicillium spp., are capable of producing mycotoxins that are carcinogenic, or otherwise harmful when consumed, and especially by those patients who suffer from a weakened immune system, causing invasive contamination in humans. Therefore, there are strict limits regarding the permitted levels of fungal colony forming units (CFU) in commercial MC inflorescences. Furthermore, the strict regulation on pesticide appliance application in MC cultivation exacerbates the problem. In order to meet the permitted CFU limit levels, there is a need for pesticide-free postharvest treatments relying on natural non-chemical methods. Thus, a decontamination approach is required that will not damage or significantly alter the chemical composition of the plant product. In this research, a new method for sterilization of MC inflorescences for reduction of fungal contaminantstes was assessed, without affecting the composition of plant secondary metabolites. Inflorescences were exposed to short pulses of steam (10, 15 and 20 s exposure) and CFU levels and plant chemical compositions, pre- and post-treatment, were evaluated. Steam treatments were very effective in reducing fungal colonization to below detection limits. The effect of these treatments on terpene profiles was minor, resulting mainly in the detection of certain terpenes that were not present in the untreated control. Steaming decreased cannabinoid concentrations as the treatment prolonged, although insignificantly. These results indicate that the steam sterilization method at the tested exposure periods was very effective in reducing CFU levels while preserving the initial molecular biochemical composition of the treated inflorescences.
Micro-patterned deposition of MoS2 ultrathin-films by a controlled droplet dragging approach
Authors: Pareek Devendra , Roach Kathryna G. , Gonzalez Marco A. , Büsing Lukas , Parisi Jürgen , Gütay Levent , Schäfer Sascha 
Published: July 2021

AbstractMicropatterning of transition metal dichalcogenide (TMDC) ultrathin-films and monolayers has been demonstrated by various multi-step approaches. However, directly achieving a patterned growth of TMDC films is still considered to be challenging. Here, we report a solution-based approach for the synthesis of patterned MoS2 layers by dragging a precursor solution droplet with variable velocities across a substrate. Utilizing the pronounced shearing velocity dependence in a Landau-Levich deposition regime, MoS2 films with a spatially modulated thickness with alternating mono/bi- and few-layer regions are obtained after precursor annealing. Generally, the presented facile methodology allows for the direct preparation of micro-structured functional materials, extendable to other TMDC materials and even van der Waals heterostructures.
Life cycle assessment of edible insects (Protaetia brevitarsis seulensis larvae) as a future protein and fat source
Authors: Nikkhah Amin , Van Haute Sam , Jovanovic Vesna , Jung Heejung , Dewulf Jo , Cirkovic Velickovic Tanja , Ghnimi Sami 
Published: July 2021

AbstractBecause it is important to develop new sustainable sources of edible protein, insects have been recommended as a new protein source. This study applied Life Cycle Assessment (LCA) to investigate the environmental impact of small-scale edible insect production unit in South Korea. IMPACT 2002 + was applied as the baseline impact assessment (IA) methodology. The CML-IA baseline, EDIP 2003, EDP 2013, ILCD 2011 Midpoint, and ReCiPe midpoint IA methodologies were also used for LCIA methodology sensitivity analysis. The protein, fat contents, and fatty acid profile of the investigated insect (Protaetia brevitarsis seulensis larvae) were analyzed to determine its potential food application. The results revealed that the studied edible insect production system has beneficial environmental effects on various impact categories (ICs), i.e., land occupation, mineral extraction, aquatic and terrestrial ecotoxicity, due to utilization of bio-waste to feed insects. This food production system can mitigate the negative environmental effects of those ICs, but has negative environmental impact on some other ICs such as global warming potential. By managing the consumption of various inputs, edible insects can become an environmentally efficient food production system for human nutrition.
Preparation and characterization of silver orthophosphate photocatalytic coating on glass substrate
Authors: Hagiri Masahide , Uchida Kenichi , Kamo Sasaki Mika , Sakinah Shofiyah 
Published: July 2021

AbstractThe photocatalytic activity of silver orthophosphate Ag3PO4 has been studied and shown to have a high photo-oxidation capability. However, there is few reported example of a simple method to prepare Ag3PO4 coatings on various substrates. In this study a novel and simple method to immobilize Ag3PO4 on the surface of glass substrates has been developed. A silver phosphate paste based on a polyelectrolyte solution was applied to a smooth glass surface. The resulting dried material was calcined to obtain a coating that remained on the glass substrate. The coating layer was characterized by X-ray diffraction and energy dispersive X-ray spectrometry, and the optical band gap of the material was determined. The results indicated that an Ag3PO4 coating responsive to visible light was successfully prepared. The coating, under visible light irradiation, has the ability to decompose methylene blue. Although the coating contained some elemental silver, this did not adversely affect the optical band gap or the photocatalytic ability.
Functional characteristics of a novel odorant binding protein in the legume pod borer, Maruca vitrata
Authors: Ai Hui , Liu Yuying , Long Guangyan , Yuan Yuan , Huang Shaopei , Chen Yan 
Published: July 2021

AbstractInsect olfaction system plays a key role in the foraging food, pollination, mating, oviposition, reproduction and other insect physiological behavior. Odorant binding protein are widely found in the various olfactory sensilla of different insect antennae and involved in chemical signals discrimination from natural environment. In this study, a novel OBP gene, MvitOBP3 is identified from the legume pod borer, Maruca vitrata, which it mainly harms important legume vegetables including cowpea, soybean and lablab bean. Real-time PCR results demonstrated that MvitOBP3 gene was abundantly expressed in the antennal tissue of M. vitrata, while low levels were distributed in the head, thorax, abdomen, leg and wing of adult moths. The recombinant OBP3 protein was purified using the prokaryotic expression and affinity chromatography system. Fluorescence competitive binding experiments indicated that that MvitOBP3 protein exhibited greater binding affinities with host-plant flower volatiles including Butanoic acid butyl ester, Limonene, 1H-indol-4-ol and 2-methyl-3-phenylpropanal, highlighting they may have attractant activities for the oviposition of female moths on the legume vegetables. Moreover, protein homology modeling and molecular docking analysis revealed that there are six amino acid sites of MvitOBP3 involved in the binding of the host-plant volatiles. These findings will further promote to understand the key role of odorant binding protein during host perception and oviposition of M. vitrata moths, which improve the efficiency of semiochemical-based prevention and monitoring for this pest in the legume vegetables field.
X-ray dark-field tomography reveals tooth cracks
Authors: Jud Christoph , Sharma Yash , Günther Benedikt , Weitz Jochen , Pfeiffer Franz , Pfeiffer Daniela 
Published: July 2021

AbstractCracked tooth syndrome (CTS) is a common clinical finding for teeth, it affects about 5% of all adults each year. The finding of CTS is favored by several risk factors such as restorations, bruxism, occlusion habits, and age. Treatment options range, depending on the severity, from no treatment at all to tooth extraction. Early diagnosis of CTS is crucial for optimal treatment and symptom reduction. There is no standard procedure for an evidence-based diagnosis up to date. The diagnosis is a challenge by the fact that the symptoms, including pain and sensitivity to temperature stimuli, cannot be clearly linked to the disease. Commonly used visual inspection does not provide in-depth information and is limited by the resolution of human eyes. This can be overcome by magnifying optics or contrast enhancers, but the diagnosis will still strongly rely on the practicians experience. Other methods are symptom reproduction with percussions, thermal pulp tests or bite tests. Dental X-ray radiography, as well as computed tomography, rarely detect cracks as they are limited in resolution. Here, we investigate X-ray dark-field tomography (XDT) for the detection of tooth microcracks. XDT simultaneously detects X-ray small-angle scattering (SAXS) in addition to the attenuation, whereas it is most sensitive to the micrometer regime. Since SAXS originates from gradients in electron density, the signal is sensitive to the sample morphology. Microcracks create manifold interfaces which lead to a strong signal. Therefore, it is possible to detect structural changes originating from subpixel-sized structures without directly resolving them. Together with complementary attenuation information, which visualizes comparatively large cracks, cracks are detected on all length-scales for a whole tooth in a non-destructive way. Hence, this proof-of principle study on three ex-vivo teeth shows the potential of X-ray scattering for evidence-based detection of cracked teeth.
A simple label-free electrochemical sensor for sensitive detection of alpha-fetoprotein based on specific aptamer immobilized platinum nanoparticles/carboxylated-graphene oxide
Authors: Upan Jantima , Youngvises Napaporn , Tuantranont Adisorn , Karuwan Chanpen , Banet Philippe , Aubert Pierre-Henri , Jakmunee Jaroon 
Published: July 2021

AbstractA label-free electrochemical aptamer-based sensor has been fabricated for alpha-fetoprotein (AFP) detection. Platinum nanoparticles on carboxylated-graphene oxide (PtNPs/GO-COOH) modified screen-printed graphene-carbon paste electrode (SPGE) was utilized as an immobilization platform, and the AFP aptamer was employed as a bio-recognition element. The synthesized GO-COOH helps to increase the surface area and amounts of the immobilized aptamer. Subsequently, PtNPs are decorated on GO-COOH to enhance electrical conductivity and an oxidation current of the hydroquinone electrochemical probe. The aptamer selectively interacts with AFP, causing a decrease in the peak current of the hydroquinone because the binding biomolecules on the electrode surface hinder the electron transfer of the redox probe. Effects of aptamer concentration and AFP incubation time were studied, and the current changes of the redox probe before and after AFP binding were investigated by square wave voltammetry. The developed aptasensor provides a linear range from 3.0–30 ng mL−1 with a detection limit of 1.22 ng mL−1. Moreover, the aptamer immobilized electrode offers high selectivity to AFP molecules, good stability, and sensitive determination of AFP in human serum samples with high recoveries.