bluuebunny/crossref_metadata_2025_split huggingface dataset:
Developing a non-destructive metabarcoding protocol for detection of pest insects in bulk trap catches
Authors: Batovska Jana , Piper Alexander M. , Valenzuela Isabel , Cunningham John Paul , Blacket Mark J. 
Published: April 2021

AbstractMetabarcoding has the potential to revolutionise insect surveillance by providing high-throughput and cost-effective species identification of all specimens within mixed trap catches. Nevertheless, incorporation of metabarcoding into insect diagnostic laboratories will first require the development and evaluation of protocols that adhere to the specialised regulatory requirements of invasive species surveillance. In this study, we develop a multi-locus non-destructive metabarcoding protocol that allows sensitive detection of agricultural pests, and subsequent confirmation using traditional diagnostic techniques. We validate this protocol for the detection of tomato potato psyllid (Bactericera cockerelli) and Russian wheat aphid (Diuraphis noxia) within mock communities and field survey traps. We find that metabarcoding can reliably detect target insects within mixed community samples, including specimens that morphological identification did not initially detect, but sensitivity appears inversely related to community size and is impacted by primer biases, target loci, and sample indexing strategy. While our multi-locus approach allowed independent validation of target detection, lack of reference sequences for 18S and 12S restricted its usefulness for estimating diversity in field samples. The non-destructive DNA extraction proved invaluable for resolving inconsistencies between morphological and metabarcoding identification results, and post-extraction specimens were suitable for both morphological re-examination and DNA re-extraction for confirmatory barcoding.
A study of differential circRNA and lncRNA expressions in COVID-19-infected peripheral blood
Authors: Wu Yingping , Zhao Tiejun , Deng Riqiang , Xia Xiaoping , Li Bin , Wang Xunzhang 
Published: April 2021

AbstractTo conquer the worldwide outbreak of COVID-19 virus, a large number of studies have been carried out on COVID-19 infection, transmission and treatment. However, few studies have been conducted from the perspectives of circRNA and lncRNA, which are known to be involved in regulating many life activities, such as immune tolerance and immune escapes, and hence may provide invaluable information in the emerging COVID-19 infection and recurrence. Moreover, exosomes has been reported to play an important role in COVID-19 recurrence, and thus may interact with the expression of circRNA and lncRNA. In this work, we sequenced circRNA, lncRNA and mRNA from recurrent COVID-19 patients and healthy people, and compared the differences. GO and KEGG enrichment analysis show that differentially expressed circRNA and lncRNA are mainly involved in the regulation of host cell cycle, apoptosis, immune inflammation, signaling pathway and other processes. The comparison to exosomes related databases shows that there are 114 differentially expressed circRNA, and 10 differentially expressed lncRNA related to exosomes. These studies provide reference for exploring circRNA and lncRNA to study the infection mechanism of COVID-19, their diagnostic and therapeutic values, as well as the possibility to employ them as biomarkers.
Thyroid hormone receptor α1 acts as a new squamous cell lung cancer diagnostic marker and poor prognosis predictor
Authors: Mohamed Fatma El Zahraa A. , Abdelaziz Ali Omar , Kasem Ahmed Hussein , Ellethy Tarek , Gayyed Mariana F. 
Published: April 2021

AbstractLung cancer is considered the major cause of cancer-related deaths worldwide. Unfortunately, all chemotherapy regimens used in lung cancer treatment showed nearly the same efficacy. Finding a new therapeutic target that can be used as an alternative after the failure of or in association with chemotherapy to improve the prognosis is an urgent demand. Up to date, it is Known that thyroid hormones (THs) and Thyroid hormone receptors (THRs) control the progression of several types of tumours. Nevertheless, their role in non-small cell lung cancer (NSCLC) is unknown. This study investigated the expression of THRα1 in NSCLC cases and its correlation to tumour clinicopathological parameters to shed new light on the relevance of THRα1 in lung cancer. Immunohistochemistry utilizing THRα1 antibody was performed on tissue sections obtained from 80 patients diagnosed with NSCLC. We also investigated the expression of THRα gene in Microarrays of lung squamous cell carcinoma (SCC) and adenocarcinoma (AC) patients by using GEO data sets on https://www.ncbi.nlm.nih.gov. We showed, for the first time, the expression of THRα1 in NSCLC. Intermediate and high THRα1 expressions were detected in (25% and 66.7%) of SCC cases respectively. High THRα1 expression was associated with shorter OS. On the other hand, 86.7% of AC cases revealed low THRα1 expression. Inflammatory cells in SCC cases showed high THRα1 expression. By analysing GEO data sets, a significant increase in THRα gene expression was found in SCC compared to AC cases. Our study underscores the possibility of using THRα1 expression not only as a prognostic marker, but also as an innovative diagnostic additive tool for lung SCC, which could be tested as a potential therapeutic target for SCC in the future.
Lerf–Klinowski-type models of graphene oxide and reduced graphene oxide are robust in analyzing non-covalent functionalization with porphyrins
Authors: Siklitskaya Alexandra , Gacka Ewelina , Larowska Daria , Mazurkiewicz-Pawlicka Marta , Malolepszy Artur , Stobiński Leszek , Marciniak Bronisław , Lewandowska-Andrałojć Anna , Kubas Adam 
Published: April 2021

AbstractGraphene-based nanohybrids are good candidates for various applications. However, graphene exhibits some unwanted features such as low solubility in an aqueous solution or tendency to aggregate, limiting its potential applications. On the contrary, its derivatives, such as graphene oxide (GO) and reduced graphene oxide (RGO), have excellent properties and can be easily produced in large quantities. GO/RGO nanohybrids with porphyrins were shown to possess great potential in the field of photocatalytic hydrogen production, pollutant photodegradation, optical sensing, or drug delivery. Despite the rapid progress in experimental research on the porphyrin-graphene hybrids some fundamental questions about the structures and the interaction between components in these systems still remain open. In this work, we combine detailed experimental and theoretical studies to investigate the nature of the interaction between the GO/RGO and two metal-free porphyrins 5,10,15,20-tetrakis(4-aminophenyl) porphyrin (TAPP) and 5,10,15,20-tetrakis(4-hydroxyphenyl) porphyrin (TPPH)]. The two porphyrins form stable nanohybrids with GO/RGO support, although both porphyrins exhibited a slightly higher affinity to RGO. We validated finite, Lerf–Klinowski-type (Lerf et al. in J Phys Chem B 102:4477, 1998) structural models of GO ($$\hbox {C}_{59}\hbox {O}_{26}\hbox {H}_{26}$$

C
59

O
26

H
26

) and RGO ($$\hbox {C}_{59}\hbox {O}_{17}\hbox {H}_{26}$$

C
59

O
17

H
26

) and successfully used them in ab initio absorption spectra simulations to track back the origin of experimentally observed spectral features. We also investigated the nature of low-lying excited states with high-level wavefunction-based methods and shown that states’ density becomes denser upon nanohybrid formation. The studied nanohybrids are non-emissive, and our study suggests that this is due to excited states that gain significant charge-transfer character. The presented efficient simulation protocol may ease the properties screening of new GO/RGO-nanohybrids.
Fear of hypoglycaemia among patients with type 2 diabetes mellitus: a cross-sectional study
Authors: Wang Yanhao , Zeng Zihuan , Ding Jie , Yuan Ruizhu , Wang Ruiding , Zhang You , Bai Liyao , Yu Huan , Tang Jiao 
Published: April 2021

AbstractTo investigate the fear of hypoglycaemia in patients with type 2 diabetes mellitus (T2DM), to identify factors related to this fear, and thus to provide evidence for clinical assessment. A total of 385 patients with T2DM who were admitted to the departments of endocrinology in five tertiary grade-A hospitals in Chongqing, China were included in this study. A questionnaire for general information and a Chinese version of Hypoglycemia Fear Survey (HFS) were used to collect the data. The average total score on the HFS was 71.67 ± 17.06 (HFS-W was 38.15 ± 10.57; HFS-B was 33.52 ± 9.54).The three items with the highest average score for HFS-W were not recognising low blood glucose (BG), not having food available, experiencing a hypoglycaemic episode alone, and for HFS-B were eating large amount of snacks, measuring BG six or more times per day, and keeping BG > 150 mmol/L. Regressions showed that number of hospitalisations for T2DM, receiving health education on diabetes, age and hypoglycaemia history because of T2DM were associated with fear of hypoglycaemia (all p < 0.05). Fear of hypoglycaemia in hospitalised patients with T2DM was strongly associated with diabetes health education, hospitalisation for diabetes, age, and hypoglycaemia history. Medical professionals should attach importance to the specific psychological interventions, health education on diabetes and the early prevention of hypoglycaemia or diabetic complications for patients with T2DM to reduce the fear of hypoglycaemia and improve their health status.
Effects of temperature and phytoplankton community composition on subitaneous and resting egg production rates of Acartia omorii in Tokyo Bay
Authors: Tsunashima Ayumi , Itoh Hiroshi , Katano Toshiya 
Published: April 2021

AbstractTo clarify the effects of temperature and phytoplankton community composition on Acartia omorii (Copepoda: Calanoida) egg production, its abundance and egg production rates were investigated from 2016 to 2018 in Tokyo Bay, Japan. Abundance was high from March to May (> 3.0 × 104 individuals m−3) and low or undetected from late June to December (≤ 0.4 × 104 individuals m−3). In 2018, most eggs were subitaneous until April; diapause eggs appeared in May when the water temperature exceeded 20 °C. The weight-specific egg production rate (SEPR, Cegg Cfemale−1 day−1) had two peaks. In the first peak in January, > 90% of eggs were subitaneous; in contrast, in the second peak in May, 60% of eggs were unhatched, including diapause eggs. The first peak of subitaneous eggs may contribute to planktonic population development from March to May. In contrast the second peak of diapause eggs probably enhances their recurrence in the next winter. Multiple regression analysis revealed that subitaneous SEPR showed a negative response, whereas diapause SEPR showed a positive response to temperature. Subitaneous SEPR positively correlated with the proportion of small diatoms in phytoplankton carbon biomass, whereas unhatched SEPR positively correlated with the proportion of inedible preys in large diatoms and dinoflagellates. Edible diatoms may induce subitaneous egg production, whereas low-food availability may induce diapause egg production. These results suggest that phytoplankton composition and water temperature have strong impacts on the dynamics of A. omorii via egg production.
Magnetic tri-bead microrobot assisted near-infrared triggered combined photothermal and chemotherapy of cancer cells
Authors: Song Xiaoxia , Chen Zhi , Zhang Xue , Xiong Junfeng , Jiang Teng , Wang Zihan , Geng Xinran , Cheang U Kei 
Published: April 2021

AbstractMagnetic micro/nanorobots attracted much attention in biomedical fields because of their precise movement, manipulation, and targeting abilities. However, there is a lack of research on intelligent micro/nanorobots with stimuli-responsive drug delivery mechanisms for cancer therapy. To address this issue, we developed a type of strong covalently bound tri-bead drug delivery microrobots with NIR photothermal response azobenzene molecules attached to their carboxylic surface groups. The tri-bead microrobots are magnetic and showed good cytocompatibility even when their concentration is up to 200 µg/mL. In vitro photothermal experiments demonstrated fast NIR-responsive photothermal property; the microrobots were heated to 50 °C in 4 min, which triggered a significant increase in drug release. Motion control of the microrobots inside a microchannel demonstrated the feasibility of targeted therapy on tumor cells. Finally, experiments with lung cancer cells demonstrated the effectiveness of targeted chemo-photothermal therapy and were validated by cell viability assays. These results indicated that tri-bead microrobots have excellent potential for targeted chemo-photothermal therapy for lung cancer cell treatment.
Regulation of plasma triglyceride partitioning by adipose-derived ANGPTL4 in mice
Authors: Spitler Kathryn M. , Shetty Shwetha K. , Cushing Emily M. , Sylvers-Davie Kelli L. , Davies Brandon S. J. 
Published: April 2021

AbstractElevated plasma triglyceride levels are associated with metabolic disease. Angiopoietin-like protein 4 (ANGPTL4) regulates plasma triglyceride levels by inhibiting lipoprotein lipase (LPL). Our aim was to investigate the role of adipocyte-specific deficiency of ANGPTL4 in mice during high fat diet feeding. Adipocyte-specific ANGPTL4 deficient mice were fed a high fat diet (60% kCal from fat) for either 12 weeks or 6 months. We performed plasma metabolic measurements, triglyceride clearance and uptake assays, LPL activity assays, and assessed glucose homeostasis. Mice lacking adipocyte ANGPTL4 recapitulated the triglyceride phenotypes of whole-body ANGPTL4 deficiency, including increased adipose LPL activity, lower plasma triglyceride levels, and increased uptake of triglycerides into adipose tissue. When fed a high fat diet (HFD), these mice continued to display enhanced adipose LPL activity and initially had improved glucose and insulin sensitivity. However, after 6 months on HFD, the improvements in glucose homeostasis were largely lost. Moreover, despite higher adipose LPL activity levels, mice lacking adipocyte ANGPTL4 no longer had increased triglyceride uptake into adipose compared to littermate controls after chronic high-fat feeding. These observations suggest that after chronic high-fat feeding LPL is no longer rate-limiting for triglyceride delivery to adipocytes. We conclude that while adipocyte-derived ANGPTL4 is an important regulator of plasma triglyceride levels and triglyceride partitioning under normal diet conditions, its role is diminished after chronic high-fat feeding.
Long term clinical result of implant induced injury on the adjacent tooth
Authors: Yi Yang-Jin , Park In-Woo , Ku Jeong-Kui , Jo Deuk-Won , Han Jung-Suk , Kim Young-Kyun 
Published: April 2021

AbstractThe purpose of the retrospective study was to investigate the long-term result of implant-induced injury on the adjacent tooth. The subjects of this retrospective study were patients who had received implants and had tooth injury; direct invasion of root (group I), root surface contact (group II), or < 1 mm distance of the implant from the root (group III). Clinical and pathological changes were periodically examined using radiographs and intra-oral examinations. Paired t-tests and chi-square tests were used to evaluate the implant stability quotient (ISQ) of implant and tooth complications, respectively (α = 0.05). A total of 32 implants and teeth in 28 patients were observed for average 122.7 (± 31.7, minimum 86) months. Seven teeth, three of which were subsequently extracted, needed root canal treatment. Finally, 90.6% of the injured teeth remained functional. Complications were significant and varied according to the group, with group I showing higher events than the others. The ISQs increased significantly. One implant in group I resulted in osseointegration failure. The implant survival rate was 96.9%. In conclusion, it was found even when a tooth is injured by an implant, immediate extraction is unnecessary, and the osseointegration of the invading implant is also predictable.
Aerosol components associated with hospital mortality in systemic sclerosis: an analysis from a nationwide Thailand healthcare database
Authors: Foocharoen Chingching , Peansukwech Udomlack , Pongkulkiat Patnarin , Mahakkanukrauh Ajanee , Suwannaroj Siraphop 
Published: April 2021

AbstractOccupational and environmental associations with systemic sclerosis (SSc) have been confirmed; however, the association between aerosol components and mortality is uncertain. The study aimed to define the association between aerosol components and hospital mortality among Thai SSc patients. A study was conducted using a national database of patients covered by the National Health Security Office, hospitalised between 2014 and 2018. Data included all patients over 18 having a primary diagnosis of SSc (ICD-10: M34). Spatial resources used map information based on GPS coordinates of Thailand. Aerosol components—including organic carbon, black carbon, dust particulate matter diameter < 2.5 µm (PM2.5), and sulfate—were assessed using the NASA satellite MERRA-2 Model M2TMNXFLX v5.12.4. Spatial modelling with R Package Integrated Nested Laplace Approximation (R-INLA) was used to analyse the association between the incidence of mortality and the 5-year accumulation of each aerosol component adjusted by age, sex, and comorbid diseases. The study included 2,094 SSc patients with 3,684 admissions. Most (63.8%) were female. During admission, 1,276 cases died. R-INLA analysis indicated an increase of 1 µg/m3 of dust PM2.5 was associated with a respective increase in the risk of overall mortality and death due to pneumonia of 96% and 79%. An increase of 1 µg/m3 of dust PM2.5 resulted in 1.17, 1.18, 1.64, and 2.15 times greater risk of mortality due to pulmonary fibrosis, cardiac involvement, renal involvement, and cancer, respectively. Aerosol components—particularly dust PM2.5 exposures—increased the risk of overall, cardio-pulmonary-renal, and cancer mortality among SSc patients.
Brain electrical traits of logical validity
Authors: Salto Francisco , Requena Carmen , Álvarez-Merino Paula , Antón-Toro Luís F. , Maestú Fernando 
Published: April 2021

AbstractNeuroscience has studied deductive reasoning over the last 20 years under the assumption that deductive inferences are not only de jure but also de facto distinct from other forms of inference. The objective of this research is to verify if logically valid deductions leave any cerebral electrical trait that is distinct from the trait left by non-valid deductions. 23 subjects with an average age of 20.35 years were registered with MEG and placed into a two conditions paradigm (100 trials for each condition) which each presented the exact same relational complexity (same variables and content) but had distinct logical complexity. Both conditions show the same electromagnetic components (P3, N4) in the early temporal window (250–525 ms) and P6 in the late temporal window (500–775 ms). The significant activity in both valid and invalid conditions is found in sensors from medial prefrontal regions, probably corresponding to the ACC or to the medial prefrontal cortex. The amplitude and intensity of valid deductions is significantly lower in both temporal windows (p = 0.0003). The reaction time was 54.37% slower in the valid condition. Validity leaves a minimal but measurable hypoactive electrical trait in brain processing. The minor electrical demand is attributable to the recursive and automatable character of valid deductions, suggesting a physical indicator of computational deductive properties. It is hypothesized that all valid deductions are recursive and hypoactive.
Comparing intra-observer variation and external variations of a fully automated cephalometric analysis with a cascade convolutional neural net
Authors: Kim In-Hwan , Kim Young-Gon , Kim Sungchul , Park Jae-Woo , Kim Namkug 
Published: April 2021

AbstractThe quality of cephalometric analysis depends on the accuracy of the delineating landmarks in orthodontic and maxillofacial surgery. Due to the extensive number of landmarks, each analysis costs orthodontists considerable time per patient, leading to fatigue and inter- and intra-observer variabilities. Therefore, we proposed a fully automated cephalometry analysis with a cascade convolutional neural net (CNN). One thousand cephalometric x-ray images (2 k × 3 k) pixel were used. The dataset was split into training, validation, and test sets as 8:1:1. The 43 landmarks from each image were identified by an expert orthodontist. To evaluate intra-observer variabilities, 28 images from the dataset were randomly selected and measured again by the same orthodontist. To improve accuracy, a cascade CNN consisting of two steps was used for transfer learning. In the first step, the regions of interest (ROIs) were predicted by RetinaNet. In the second step, U-Net detected the precise landmarks in the ROIs. The average error of ROI detection alone was 1.55 ± 2.17 mm. The model with the cascade CNN showed an average error of 0.79 ± 0.91 mm (paired t-test, p = 0.0015). The orthodontist’s average error of reproducibility was 0.80 ± 0.79 mm. An accurate and fully automated cephalometric analysis was successfully developed and evaluated.
Triage of human papillomavirus infected women by methylation analysis in first-void urine
Authors: Van Keer Severien , van Splunter Annina P. , Pattyn Jade , De Smet Annemie , Herzog Sereina A. , Van Ostade Xaveer , Tjalma Wiebren A. A. , Ieven Margareta , Van Damme Pierre , Steenbergen Renske D. M. , Vorsters Alex 
Published: April 2021

AbstractHost cell DNA methylation analysis in urine provides promising triage markers for women diagnosed with a high-risk (HR) human papillomavirus (HPV) infection. In this study, we have investigated a panel of six host cell methylation markers (GHSR, SST, ZIC1, ASCL1, LHX8, ST6GALNAC5) in cervicovaginal secretions collected within the first part of the urine void (FVU) from a referral population. Cytology, histology, and HPV DNA genotyping results on paired FVU and cervical samples were available. Urinary median methylation levels from HR-HPV (n = 93) positive women were found to increase for all markers with severity of underlying disease. Significantly elevated levels were observed for GHSR and LHX8 in relation to high-grade cervical intraepithelial neoplasia (CIN2 +; n = 33), with area under de curve values of 0.80 (95% Confidence Interval (CI) 0.59–0.92) and 0.76 (95% CI 0.58–0.89), respectively. These findings are the first to support the assertion that methylation analysis of host cell genes is feasible in FVU and holds promise as molecular, triage strategy to discern low- from high-grade cervical disease in HR-HPV positive women. Molecular testing on FVU may serve to increase cervical cancer screening attendance in hard-to-reach populations whilst reducing loss to follow-up and await further optimization and validation studies.