bluuebunny/crossref_metadata_2025_split huggingface dataset:
Dynamic anti-plane behavior of rare earth giant magnetostrictive medium with a circular cavity defect in semi-space
Authors: Liu Zhiwei , Qi Hui 
Published: June 2021

AbstractAn analytical solution to the anti-plane dynamics problem of semi-space rare earth giant magnetostrictive media with circular cavity defects near the horizontal boundary under the action of SH wave is studied. Based on the Helmholtz theorem and the theory of complex function, the elastic-magnetic dynamic equation of magnetostrictive medium is established, and the semi-space incident wave field is written. In addition, based on the theory of complex function and the method of wave function expansion, the expression of the wave function of the scattered displacement field and the corresponding magnetic potential of the scattered wave under the condition of no stress and magnetic insulation of the horizontal boundary are obtained. Then, based on the conditions of free boundary stress, continuous magnetic induction intensity and continuous magnetic potential around the circular cavity, the infinite linear algebraic equations are established. Finally, the analytical expressions of dynamic stress concentration factor and magnetic field intensity concentration factor around circular cavity in semi-space rare earth giant magnetostrictive medium are obtained. Numerical examples show that the analysis results depend on the following parameters: permeability, dimensional-piezomagnetic coefficient, frequency of the incident wave, incident angle, distance between the circular cavity and horizontal boundary. These results have certain reference value for the study of non-destructive testing and failure analysis of rare earth giant magnetostrictive materials.
Zebrafish behavior feature recognition using three-dimensional tracking and machine learning
Authors: Yang Peng , Takahashi Hiro , Murase Masataka , Itoh Motoyuki 
Published: June 2021

AbstractIn this work, we aim to construct a new behavior analysis method by using machine learning. We used two cameras to capture three-dimensional (3D) tracking data of zebrafish, which were analyzed using fuzzy adaptive resonance theory (FuzzyART), a type of machine learning algorithm, to identify specific behavioral features. The method was tested based on an experiment in which electric shocks were delivered to zebrafish and zebrafish swimming was tracked in 3D simultaneously to find electric shock-associated behaviors. By processing the obtained data with FuzzyART, we discovered that distinguishing behaviors were statistically linked to the electric shock based on the machine learning algorithm. Moreover, our system could accept user-supplied data for detection and quantitative analysis of the behavior features, such as the behavior features defined by the 3D tracking analysis above. This system could be applied to discover new distinct behavior features in mutant zebrafish and used for drug administration screening and cognitive ability tests of zebrafish in the future.
Serum neurofilament light chain as a severity marker for spinocerebellar ataxia
Authors: Shin Hye-Rim , Moon Jangsup , Lee Woo-Jin , Lee Han Sang , Kim Eun Young , Shin Seoyi , Lee Soon-Tae , Jung Keun-Hwa , Park Kyung-Il , Jung Ki-Young , Lee Sang Kun , Chu Kon 
Published: June 2021

AbstractSince the serum neurofilament light (NfL) chain is known as a promising biomarker in neurodegenerative diseases, we aimed to evaluate serum NfL as a biomarker indicating neuronal damage in autosomal-dominant (AD) spinocerebellar ataxia (SCA). We reviewed patients diagnosed with AD SCA in the outpatient clinic of Seoul National University Hospital’s (SNUH) Department of Neurology between May and August of 2019. We reviewed the demographic data, clinical characteristics, Scale for the Assessment and Rating of Ataxia (SARA) score, and brain magnetic resonance imaging (MRI) scans. The serum NfL was measured by electrochemiluminescence (ECL) immunoassay. Forty-nine patients with AD SCA were reviewed and their serum NfL level was determined. The median serum NfL level (109.5 pg/mL) was higher than control (41.1 pg/mL) (p-value < 0.001). Among the AD SCA patients, there was a positive correlation between the serum NfL level and the trinucleotide repeat number (r = 0.47, p-value = 0.001), disease duration (r = 0.35, p-value = 0.019), disease duration/age × trinucleotide repeat number (r = 0.330, p-value = 0.021), and SARA score (n = 33; r = 0.37, p-value = 0.033). This study shows that serum NfL is elevated in AD SCA patients and correlates with clinical severity.
The maintenance of microbial community in human fecal samples by a cost effective preservation buffer
Authors: Wu Chongming , Chen Tianda , Xu Wenyi , Zhang Tingting , Pei Yuwei , Yang Yanan , Zhang Fang , Guo Hao , Wang Qingshi , Wang Li , Zhao Bowen 
Published: June 2021

AbstractIn the burgeoning microbiome field, powerful sequencing approaches and accompanied bioanalytical methods have made tremendous contributions to the discoveries of breakthroughs, which favor to unravel the intimate interplay between gut microbiota and human health. The proper preservation of samples before being processed is essential to guarantee the authenticity and reliability of microbiome studies. Hence, the development of preservation methods is extremely important to hold samples eligible for the consequent analysis, especially population cohort-based investigations or those spanning species or geography, which frequently facing difficulties in suppling freezing conditions. Although there are several commercial products available, the exploration of cost-efficient and ready-to-use preservation methods are still in a large demand. Here, we performed shotgun metagenomic sequencing and demonstrated that microbial consortia in human fecal samples were substantially preserved within a temporary storage of 4 h, independent of the storage temperature. We also verified a previous reported self-made preservation buffer (PB buffer) could not only preserve fecal microbiota at room temperature up to 4 weeks but also enable samples to endure a high temperature condition which mimics temperature variations in summer logistics. Moreover, PB buffer exhibited suitability for human saliva as well. Collectively, PB buffer may be a valuable choice to stabilize samples if neither freezing facilities nor liquid nitrogen is available.
Experimental study on the ratio model of similar materials in the simulation test of coal and gas outburst
Authors: Sun Peng , Sun Haitao , Lin Fujin , Yang Xuelin , Jiang Wangang , Wu Winbin , Jia Quanmin 
Published: June 2021

AbstractTo obtain the similar materials with specific physical and mechanical parameters and adsorption and desorption indexes used in coal and gas outburst simulation tests, pulverized coal was selected as aggregate, and sodium humate was selected as cementing agent and river sand was selected as auxiliary materials. Based on this, orthogonal tests with 6 factors and 5 levels were designed, and the tests of weighing, uniaxial compression, firmness, adsorption and desorption were carried out. The parameters such as density, uniaxial compressive strength, elastic modulus, firmness coefficient and adsorption–desorption index of similar materials with different ratios were obtained, and the sensitivity of each factor was analyzed by range analysis. The influence of various factors on the similar materials was studied, and the ratio model of similar materials was obtained. The reliability of the model was verified, and a complete method for determining the ratio model of similar materials of outburst coal was put forward. The results show that the density of the similar materials increases with the river sand content, and the uniaxial compressive strength and elastic modulus increase significantly with the pulverized coal ratio and sodium humate content, and the firmness coefficient increases linearly with the pulverized coal ratio. The adsorption constant increases linearly with the sodium humate content, while the adsorption constant b decreases linearly with the sodium humate content. The initial elution rate Δp of similar materials increases at first and then decreases with the increase of sodium humate content.
Refined premature chromosome condensation (G0-PCC) with cryo-preserved mitotic cells for rapid radiation biodosimetry
Authors: Yadav Usha , Bhat Nagesh N. , Shirsaath Kapil B. , Mungse Utkarsha S. , Sapra Balvinder K. 
Published: June 2021

AbstractMitotic cell fusion induced Premature Chromosome Condensation (G0-PCC) assay in human lymphocytes allows rapid detection of cytogenetic damage in interphase stage, within few hours after blood collection. Hence, it is the most suitable method for rapid and high dose biodosimetry. Mitotic cells, used for G0-PCC could be either freshly isolated or previously cryo-preserved. However, under emergency scenarios, only cryo-preserved cells can be relied upon, fresh isolation will only delay the process by 18–24 h. Impact of cryopreservation on mitotic cells and their efficacy to induce PCC are not reported. In the present study, we investigated effect of cryopreservation on mitotic cells and refined the parameters for G0-PCC. More than 95% of the cells were recoverable after 4 months of cryopreservation, within 20 min recovery at 37 °C, without significant change in the mitotic index or viability. Recovered mitotic cells have shown mitotic index of 89 ± 4% and viability of 90 ± 4%, similar to that of freshly isolated cells. Decrease in metaphases was observed within 40 min after recovery as the mitotic cells progressed through cell cycle and reduced to 21% at 1 h. Nevertheless, in presence of Colcemid, the cells progressed slowly and considerably high metaphase index (60%) persisted up to ~ 2 h. The recovered cells efficiently fused with lymphocytes and induced PCC. Average PCC index varied from 10 to 20%, which did not change with cryopreservation duration. Post fusion incubation duration of 2 h was found to be optimum for proper chromosome condensation. In conclusion, use of cryo-preserved mitotic cells is the most practical approach for rapid biodosimetry. The cells can be recovered quickly and efficiently without alteration in viability or mitotic index. Recovered cells are fully competent to induce G0-PCC.
Mendelian randomization analysis of arsenic metabolism and pulmonary function within the Hispanic Community Health Study/Study of Latinos
Authors: Scannell Bryan Molly , Sofer Tamar , Afshar Majid , Mossavar-Rahmani Yasmin , Hosgood H. Dean , Punjabi Naresh M. , Zeng Donglin , Daviglus Martha L. , Argos Maria 
Published: June 2021

AbstractArsenic exposure has been linked to poor pulmonary function, and inefficient arsenic metabolizers may be at increased risk. Dietary rice has recently been identified as a possible substantial route of exposure to arsenic, and it remains unknown whether it can provide a sufficient level of exposure to affect pulmonary function in inefficient metabolizers. Within 12,609 participants of HCHS/SOL, asthma diagnoses and spirometry-based measures of pulmonary function were assessed, and rice consumption was inferred from grain intake via a food frequency questionnaire. After stratifying by smoking history, the relationship between arsenic metabolism efficiency [percentages of inorganic arsenic (%iAs), monomethylarsenate (%MMA), and dimethylarsinate (%DMA) species in urine] and the measures of pulmonary function were estimated in a two-sample Mendelian randomization approach (genotype information from an Illumina HumanOmni2.5-8v1-1 array), focusing on participants with high inferred rice consumption. Among never-smoking high inferred consumers of rice (n = 1395), inefficient metabolism was associated with past asthma diagnosis and forced vital capacity below the lower limit of normal (LLN) (OR 1.40, p = 0.0212 and OR 1.42, p = 0.0072, respectively, for each percentage-point increase in %iAs; OR 1.26, p = 0.0240 and OR 1.24, p = 0.0193 for %MMA; OR 0.87, p = 0.0209 and OR 0.87, p = 0.0123 for the marker of efficient metabolism, %DMA). Among ever-smoking high inferred consumers of rice (n = 1127), inefficient metabolism was associated with peak expiratory flow below LLN (OR 1.54, p = 0.0108/percentage-point increase in %iAs, OR 1.37, p = 0.0097 for %MMA, and OR 0.83, p = 0.0093 for %DMA). Less efficient arsenic metabolism was associated with indicators of pulmonary dysfunction among those with high inferred rice consumption, suggesting that reductions in dietary arsenic could improve respiratory health.
Mining chemical information in Swedish wastewaters for simultaneous assessment of population consumption, treatment efficiency and environmental discharge of illicit drugs
Authors: Haalck Inga , Löffler Paul , Baduel Christine , Wiberg Karin , Ahrens Lutz , Lai Foon Yin 
Published: June 2021

AbstractConsumption of illicit drugs poses health risks to the public and environment. Knowledge on their usage helps better implementations of intervention strategies to reduce drug-related harms in the society and also policies to limit their releases as emerging contaminants to recipient environments. This study aimed to investigate from the daily consumption to treatment efficiency and subsequent discharge of illicit drugs by the Swedish urban populations based on simultaneous collection and analysis of influent and effluent wastewater. Two different weekly monitoring campaigns showed similar drug prevalence in Stockholm and Uppsala, with amphetamine as the most popular drug. Almost all target drug residues were still measurable in effluent wastewater. High removal efficiencies (> 94%) were observed for amphetamine, cocaine and benzoylecgonine, whereas ketamine, 3,4-methylenedioxymethamphetamine (MDMA), mephedrone and methamphetamine were the least removed substances (< 64%), with the highest discharge observed for MDMA in both catchments (~ 3.0 g/day in Uppsala; ~ 18 g/day in Stockholm). Our study provides new insights into short-term changes in the use and related discharge of illicit drugs by urban populations. Such wastewater monitoring can provide useful information to public health, forensic and environmental authorities in planning future intervention and regulation policies.
Analysis of strength property and pore characteristics of Taihang limestone using X-ray computed tomography at high temperatures
Authors: Liu Shi , Huang Zhe 
Published: June 2021

AbstractRising temperature will cause the changes of pore characteristics and strength property in rock. This research takes the limestone produced in Taihang Mountains as the research object, and performs high-temperature treatment within 25–1000 °C. The high-resolution X-ray computed tomography (CT) scanning test method is used to visually reconstruct the three-dimensional image of the sample, and obtain the spatial distribution status of the mesoscopic parameters of the bones, pores/cracks, etc. The results show that when the temperature exceeded 700 °C, the samples appeared milky white in appearance and as the temperature increased, the color gradually turned white, macroscopic cracks began to appear on the surface, while the meso-pores connected rapidly, reflecting a typical progressive destruction process from inside to outside. The change law of volume porosity with temperature has a consistent trend with that of the apparent morphology of the sample. Similarly, the mechanical test results suggest that 700 °C is also the turning temperature for strength deterioration and brittle-plastic transformation of sample. Based on the results of high-temperature test, CT test and mechanical test, there are enough evidences to show that, for the limestone sample, 700 °C is probably to be the mutation temperature of physical–mechanical behavior.
Patterns of combustible and electronic cigarette use during pregnancy and associated pregnancy outcomes
Authors: Regan Annette K. , Pereira Gavin 
Published: June 2021

AbstractAlthough pregnant smokers may perceive electronic cigarettes (e-cigarettes) as safe alternatives to smoking combustible cigarettes, few studies have evaluated perinatal e-cigarette use and its associated health effects. We analyzed data from the Pregnancy Risk Assessment Monitoring System (PRAMS, 2016–2018) for 16,022 women who recently gave birth and reported smoking combustible cigarettes prior to pregnancy. Using average marginal predictive values from multivariable logistic regression to produce adjusted prevalence ratios (aPRs), we estimated the prevalence of combustible cigarette smoking during pregnancy and adverse birth outcomes associated with e-cigarette use. In total, 14.8% of smoking women reported using e-cigarettes prior to pregnancy. There was no association between e-cigarette use prior to pregnancy and combustible cigarette smoking during pregnancy (aPR 0.95; 95% CI 0.88, 1.02); however, e-cigarette use during pregnancy was associated with higher prevalence of combustible cigarette smoking during pregnancy (aPR 1.65; 95% CI 1.52, 1.80). In this sample, we did not observe evidence to support reduced risk of preterm birth, small-for-gestational age and low birthweight compared to combustible cigarette smoking during pregnancy. The prevalence of LBW was higher for those who used e-cigarettes, even exclusively, compared to women who quit smoking cigarettes entirely. These results suggest that e-cigarettes should not be considered a safe alternative to combustible cigarette smoking during pregnancy.
Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Authors: Nwokoye Ebelechukwu C. , AlNaseem Eiman , Crawford Robert A. , Castelli Lydia M. , Jennings Martin D. , Kershaw Christopher J. , Pavitt Graham D. 
Published: June 2021

AbstractBy interacting with the mRNA 5′ cap, the translation initiation factor eIF4E plays a critical role in selecting mRNAs for protein synthesis in eukaryotic cells. Caf20 is a member of the family of proteins found across eukaryotes termed 4E-BPs, which compete with eIF4G for interaction with eIF4E. Caf20 independently interacts with ribosomes. Thus, Caf20 modulates the mRNA selection process via poorly understood mechanisms. Here we performed unbiased mutagenesis across Caf20 to characterise which regions of Caf20 are important for interaction with eIF4E and with ribosomes. Caf20 binding to eIF4E is entirely dependent on a canonical motif shared with other 4E-BPs. However, binding to ribosomes is weakened by mutations throughout the protein, suggesting an extended binding interface that partially overlaps with the eIF4E-interaction region. By using chemical crosslinking, we identify a potential ribosome interaction region on the ribosome surface that spans both small and large subunits and is close to a known interaction site of eIF3. The function of ribosome binding by Caf20 remains unclear.
Activation of NF-κB and induction of proinflammatory cytokine expressions mediated by ORF7a protein of SARS-CoV-2
Authors: Su Chia-Ming , Wang Leyi , Yoo Dongwan 
Published: June 2021

AbstractSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the causative agent for coronavirus disease 2019 (COVID-19) that emerged in human populations recently. Severely ill COVID-19 patients exhibit the elevation of proinflammatory cytokines, and such an unbalanced production of proinflammatory cytokines is linked to acute respiratory distress syndrome with high mortality in COVID-19 patients. Our study provides evidence that the ORF3a, M, ORF7a, and N proteins of SARS-CoV-2 were NF-κB activators. The viral sequence from infected zoo lions belonged to clade V, and a single mutation of G251V is found for ORF3a gene compared to all other clades. No significant functional difference was found for clade V ORF3a, indicating the NF-κB activation is conserved among COVID-19 variants. Of the four viral proteins, the ORF7a protein induced the NF-κB dictated proinflammatory cytokines including IL-1α, IL-1β, IL-6, IL-8, IL-10, TNF-α, and IFNβ. The ORF7a protein also induced IL-3, IL-4, IL-7, IL-23. Of 15 different chemokines examined in the study, CCL11, CCL17, CCL19, CCL20, CCL21, CCL22, CCL25, CCL26, CCL27, and CXCL9 were significantly upregulated by ORF7. These cytokines and chemokines were frequently elevated in severely ill COVID-19 patients. Our data provide an insight into how SARS-CoV-2 modulates NF-κB signaling and inflammatory cytokine expressions. The ORF7a protein may be a desirable target for strategic developments to minimize uncontrolled inflammation in COVID-19 patients.
Subjective time compression induced by continuous action
Authors: Ueda Sayako , Shimoda Shingo 
Published: June 2021

AbstractIncreasing evidence indicates that voluntary actions can modulate the subjective time experience of its outcomes to optimize dynamic interaction with the external environment. In the present study, using a temporal reproduction task where participants reproduced the duration of an auditory stimulus to which they were previously exposed by performing different types of voluntary action, we examined how the subjective time experience of action outcomes changed with voluntary action types. Two experiments revealed that the subjective time experience of action outcomes was compressed, compared with physical time, if the action was performed continuously (Experiment 1), possibly enhancing the experience of controlling the action outcome, or if the action was added an extra task-unrelated continuous action (Experiment 2), possibly reflecting different underlying mechanisms from subjective time compression induced by the task-related continuous action. The majority of prior studies have focused on the subjective time experience of action outcomes when actions were performed voluntarily or not, and no previous study has examined the effects of differences in voluntary action types on the subjective time experience of action outcomes. These findings may be useful in situations in which people wish to intentionally compress their own time experience of daily events through their voluntary actions.
A survey of monitoring tap water hardness in Japan and its distribution patterns
Authors: Hori Mayumi , Shozugawa Katsumi , Sugimori Kenji , Watanabe Yuichiro 
Published: June 2021

AbstractWe conducted a comprehensive overall tap water hardness assessment for Japan. Tap water was collected from 665 points throughout Japan, and its standing position was quantitatively clarified by prefecture. The mean and median hardness of tap water in Japan was 48.9 ± 25.8 (1σ SD) and 46.0 mg/L, respectively. Compared with 27 other countries, Japan exhibited soft water with low-mineral content. Water hardness tended to be high in the Kanto region and low in the Hokkaido and Tohoku regions. The impact of the distribution system’s water pipes on tap water hardness is discussed using a unified index to evaluate variations in hardness from raw to tap water. A comparison of the variations in hardness showed that hardness variations from raw to purified water and from purified to tap water exhibited a 20% variation range. Furthermore, tap water hardness and its fluctuations in any region of Japan were found to be caused by raw water hardness. It was demonstrated that the distribution pipe system had no large impacts on water hardness.