bluuebunny/crossref_metadata_2025_split huggingface dataset:
QSAR-assisted-MMPA to expand chemical transformation space for lead optimization
Authors: Fu Li , Yang Zi-Yi , Yang Zhi-Jiang , Yin Ming-Zhu , Lu Ai-Ping , Chen Xiang , Liu Shao , Hou Ting-Jun , Cao Dong-Sheng 
Published: November 2020

AbstractMatched molecular pairs analysis (MMPA) has become a powerful tool for automatically and systematically identifying medicinal chemistry transformations from compound/property datasets. However, accurate determination of matched molecular pair (MMP) transformations largely depend on the size and quality of existing experimental data. Lack of high-quality experimental data heavily hampers the extraction of more effective medicinal chemistry knowledge. Here, we developed a new strategy called quantitative structure–activity relationship (QSAR)-assisted-MMPA to expand the number of chemical transformations and took the logD7.4 property endpoint as an example to demonstrate the reliability of the new method. A reliable logD7.4 consensus prediction model was firstly established, and its applicability domain was strictly assessed. By applying the reliable logD7.4 prediction model to screen two chemical databases, we obtained more high-quality logD7.4 data by defining a strict applicability domain threshold. Then, MMPA was performed on the predicted data and experimental data to derive more chemical rules. To validate the reliability of the chemical rules, we compared the magnitude and directionality of the property changes of the predicted rules with those of the measured rules. Then, we compared the novel chemical rules generated by our proposed approach with the published chemical rules, and found that the magnitude and directionality of the property changes were consistent, indicating that the proposed QSAR-assisted-MMPA approach has the potential to enrich the collection of rule types or even identify completely novel rules. Finally, we found that the number of the MMP rules derived from the experimental data could be amplified by the predicted data, which is helpful for us to analyze the medicinal chemical rules in local chemical environment. In summary, the proposed QSAR-assisted-MMPA approach could be regarded as a very promising strategy to expand the chemical transformation space for lead optimization, especially when no enough experimental data can support MMPA.
The Component Diagnosability of Hypercubes with Large-Scale Faulty Nodes
Authors: Zhang Shurong , Liang Dongyue , Chen Lin , Li Ronghua , Yang Weihua 
Published: November 2020

Abstract
The diagnosability is one of the most important measures of the reliability of networks. Consider the setting where there are large-scale failures that disconnect the network and result in many components. Then, the diagnosability is closely related to the number of components. In this paper, we define and study the $\boldsymbol{g}$-component diagnosability of network $\boldsymbol{G}$, which is denoted by $\boldsymbol{ct_g(G)}$ and has not been addressed before. $\boldsymbol{ct_g(G)}$ is the maximum number of nodes in the faulty node set $\boldsymbol{F}$ of $\boldsymbol{G}$ such that $\boldsymbol{G-F}$ has at least $\boldsymbol{g}$ components and diagnosis model can identify all nodes in $\boldsymbol{F}$. Under PMC and MM$^*$ diagnosis models, we show that, in the hypercube $\boldsymbol{Q_n\ (n\geq 7)}$, $\boldsymbol{ct_{g+1}(Q_n)=-(1/2)g^2+(n-3/2)g+n}$ when $\boldsymbol{g\leq n-1}$. Moreover, we determine the $\boldsymbol{(n+1)}$-component diagnosability $\boldsymbol{ct_{n+1}(Q_n)=n^2/2+n/2-2}$ for $\boldsymbol{n\geq 7}$.
A Profit-maximizing Mechanism for Query-based Data Trading with Personalized Differential Privacy
Authors: Cai Hui , Zhu Yanmin , Li Jie , Yu Jiadi 
Published: November 2020

AbstractData trading has attracted increasing attention over the years as a cost-effective business paradigm, probably producing a tremendous amount of economic value. However, the study of query-based trading in the user data market is still in the initial stage. To design a practical user data trading mechanism, we have to consider three major challenges: privacy concern, compensation cost minimization and revenue maximization in a Bayesian environment. By jointly considering these challenges, we propose a profit-maximizing mechanism for user data trading with personalized differential privacy, called READ, which comprised two components, READ-COST for cost minimization and READ-REV for revenue maximization. Especially, READ adopts personalized differential privacy to satisfy each data owner’s diverse privacy preferences. READ-COST greedily selects the most cost-effective data owner to achieve the sub-optimal data query cost. Given this query cost, READ-REV calculates the maximum expected revenue in a Bayesian setting. Through rigorous theoretical analysis and real-data based experiments, we demonstrate that READ achieves all desired properties and approaches the optimal profit.
Salient Object Detection Based on Multiscale Segmentation and Fuzzy Broad Learning
Authors: Lin Xiao , Wang Zhi-Jie , Ma Lizhuang , Li Renjie , Fang Mei-E 
Published: November 2020

Abstract
Saliency detection has been a hot topic in the field of computer vision. In this paper, we propose a novel approach that is based on multiscale segmentation and fuzzy broad learning. The core idea of our method is to segment the image into different scales, and then the extracted features are fed to the fuzzy broad learning system (FBLS) for training. More specifically, it first segments the image into superpixel blocks at different scales based on the simple linear iterative clustering algorithm. Then, it uses the local binary pattern algorithm to extract texture features and computes the average color information for each superpixel of these segmentation images. These extracted features are then fed to the FBLS to obtain multiscale saliency maps. After that, it fuses these saliency maps into an initial saliency map and uses the label propagation algorithm to further optimize it, obtaining the final saliency map. We have conducted experiments based on several benchmark datasets. The results show that our solution can outperform several existing algorithms. Particularly, our method is significantly faster than most of deep learning-based saliency detection algorithms, in terms of training and inferring time.
Unlinkable and Revocable Secret Handshake
Authors: Tian Yangguang , Li Yingjiu , Mu Yi , Yang Guomin 
Published: November 2020

Abstract
In this paper, we introduce a new construction for unlinkable secret handshake that allows a group of users to perform handshakes anonymously. We define formal security models for the proposed construction and prove that it can achieve session key security, anonymity and affiliation hiding. In particular, the proposed construction ensures that (i) anonymity against protocol participants (including group authority) is achieved since a hierarchical identity-based signature is used in generating group user’s pseudonym-credential pairs and (ii) revocation is achieved using a secret sharing-based revocation mechanism.
A standardized approach for the thoracic dissection in robotic-assisted minimally invasive esophagectomy (RAMIE)
Authors: Kingma B F , Read M , van Hillegersberg R , Chao Y K , Ruurda J P 
Published: November 2020

ABSTRACT
Robot-assisted minimally invasive esophagectomy (RAMIE) is increasingly being adopted as the preferred surgical treatment for esophageal cancer, as it is superior to open esophagectomy and a good alternative to conventional minimally invasive esophagectomy. This paper addresses the technical details of the thoracoscopic phase of RAMIE, including the operating room set-up, patient positioning, port placement, and surgical steps.
Systematic Review of Factors Affecting Transition Readiness Skills in Patients with Inflammatory Bowel Disease
Authors: Johnson Lara E , Lee Matthew J , Turner-Moore Rhys , Grinsted Tate Lydia R , Brooks Alenka J , Tattersall Rachel S , Jones Georgina L , Lobo Alan J 
Published: November 2020

Abstract

Background and Aims
The incidence of inflammatory bowel disease [IBD] diagnosed before adulthood is increasing worldwide. Transition from paediatric to adult health care requires certain skills. The aim of this study was to identify factors affecting these skills.

Methods
This review was registered on the PROSPERO database [CRD42019152272]. Inclusion criteria were: 1] studies of factors affecting transition readiness skills in patients with IBD; 2] written in English; 3] published since 1999. MEDLINE, CINAHL, and PsychINFO databases were searched between 1999 and 2019. Quality was assessed using the Joanna Briggs Institute critical appraisal tools.

Results
Searches identified 822 papers. Sixteen papers were included. Age was positively associated with skills including disease knowledge and performing self-management behaviours [14 studies]. Improvement often occurs at 18; however, skill deficiency may still remain. Increased self-efficacy [confidence] was associated with greater disease knowledge and performing self-management behaviours [three studies]. Self-efficacy was positively correlated with transition duration [two studies] and health-related quality of life [r = 0.57, p &lt;0.001] [one study], negatively correlated with depression [r = -0.57, p &lt;0.001] and anxiety [r = -0.23, p = 0.03] [one study], and was associated with higher education level [two studies] and a family history of IBD [one study]. Females had higher self-management scores [three studies], and greater health care satisfaction was significantly associated with higher knowledge [one study]. Greater transition communication improved knowledge, self-management, and overall transition readiness [two studies].

Conclusions
Potentially modifiable factors have been identified that could be supported in the transitioning IBD population, to improve transition readiness. Identification of those with non-modifiable characteristics associated with poor readiness may aid targeted support.
Simple and additive diagnostic modalities for the screening of heart failure with preserved ejection fraction
Authors: Illes B , Agoston G , Gargani L , Szabo I , Polestyuk-Nemeth N , Varga A 
Published: November 2020

Abstract

Background
Nearly half of all patients with heart failure (HF) symptoms have an EF that is preserved (HFpEF). The prevalence of HFpEF is rising, with high morbidity, mortality. The diagnosis of HFpEF is particularly challenging. Lung ultrasound (LUS) and left atrial strain are promising screening and diagnostic tools to assess pulmonary congestion and left atrial dysfunction in patients with suspected HFpEF.

Aim
To evaluate the relationship between patients symptoms, pro-BNP level with LUS and left atrial strain, as well to assess the diagnostic power of B-lines in HFpEF population.

Methods
82 consecutive patients (57 women, mean age 70±6 years) with clinical signs of heart failure were prospectively enrolled. Exclusion criteria were: ejection fraction &lt;55%, more than mild mitral and/or aortic valve disease, pulmonary disease, pulmonary arterial hypertension. Within one hour all patients underwent comprehensive echocardiographic evaluation including left atrial strain analysis (peak atrial longitudinal strain-LASr), lung ultrasound assessment of B-lines on the anterolateral and posterior chest wall, and NT-proBNP levels.

Results
In 45 patients (54%) a significant number of B-lines (≥15) were observed. We found a positive correlation between the number of B-lines and NT-proBNP levels (p&lt;0.0001, r=0.67), left atrial volume (p&lt;0.0001, r=0.45), and LASr (p&lt;0.005, r=−0.4). We also found week correlation between the number of B-lines and E/e' ratio (p&lt;0.003, r=0.3), and between E/e' ratio and NT-proBNP level (p&lt;0.05, r=0.2). We also assessed the diagnostic ability of B-lines to predict markedly elevated pro-BNP level (≥125pg/ml), AUC was 0.85, with specificity of 64% and sensitivity of 85% (Figure 1). The number of B lines also correlated with the H2FPEF score (p&lt;0.001, r=0.4).

Conclusion
LUS is a simple, feasible tool to detect pulmonary congestion in HFpEF and it has an adequate diagnostic power to predict elevated NTpro-BNP level. LASr is promising too, which better reflects pulmonary congestion and elevated NT-proBNP values than the conventional echocardiographic parameters.
Figure 1. ROC curve Blines predict high NTproBNP

Funding Acknowledgement
Type of funding source: None
Left atrial remodeling after Mitraclip implantation
Authors: Neri G , Aquila I , Albanese M , Panuccio G , Polimeni A , Sabatino J , Mascaro G , Spaccarotella C , Mongiardo A , Indolfi C 
Published: November 2020

Abstract

Objective
Changes in left atrial (LA) size and function are associated with major adverse cardiovascular outcomes such as atrial fibrillation, heart failure, stroke, and death. Reverse LA remodelling occurs after successful surgical mitral valve repair for severe MR. Changes in LA volumes after MV repair have reported in several studies. However, LA data are limited in the setting of transcatheter repair.

Materials an methods
From November 2016 to July 2018, clinical and echocardiographic data of 42 patients with mitral regurgitation who underwent Mitraclip implantation in our division were evaluated for LA function: LA global longitudinal strain (LA GLS); LAESV (Left atrial end-systolic volume), LAEDV (Left atrial end-diastolic volume); LA emptying Fraction at baseline, at 1 month, at 6 months and 1 year of follow up were assessed. The variation of continuous variables was evaluated using a student T test for paired data or the Wilcoxon matched-pair signed rank test when appropriate. The categorical variables between two groups were evaluated using the chi-square test (χ2). P values &lt;0.05 were considered significant.

Results
The etiology of the mitral regurgitation was primary in 33,3% and secondary in 66,7% of the included patients. The MR degree was 3+ in 21,4% of patients and 4+ in 78,6%. When compared to baseline at 6 months and 1 year a statistically significant reduction was observed for both LAESV (p&lt;0.001) and LAEDV (p&lt;0.001). At 6 months, compared to baseline, the LA GLS reached statistic relevance (p 0.05) with a significant improvement at 1 year (p 0.001). Finally, we did not find significant differences in LA emptying fraction at different time point analyzed.

Conclusions
A successful MitraClip procedure can reverse the process of LA remodeling within 12 months, and this can be detected by Two-dimensional speckle tracking echocardiography (2D STE) through an improvement in the LA reservoir function. These data generate the hypothesis that the GLS, compared to conventional echocardiographic parameters, represents an advanced method that quantify atrial function in Mitraclip implanted patients.

Funding Acknowledgement
Type of funding source: Public hospital(s)
Normal reference values of three-dimensional speckle-tracking echocardiography-derived left ventricular strain parameters in healthy adults
Authors: Nemes A , Kormanyos A , Kalapos A , Domsik P , Gyenes N , Ambrus N , Lengyel C 
Published: November 2020

Abstract

Introduction
At this moment, limited number of studies is defining normal reference value of three-dimensional (3D) speckle-tracking echocardiography (3DSTE)-derived left ventricular (LV) strains. The present study aimed to quantify normal reference values of LV strains in healthy adult population in real clinical world settings in different age groups and to determine age- and gender-dependence of these parameters in a high volume single centre.

Methods
The present study comprised 296 healthy adult subjects from which 124 cases were excluded due to inferior image quality during a 6-year period. The remaining population was further divided into 4 subgroups based on age decades. The following groups of healthy subjects were examined based on their age: 18–29 years (mean age: 23.6±2.8 years, 45 males out of 94), 30–39 years (mean age: 33.7±2.8 years, 27 males out of 34), 40–49 years (mean age: 43.4±3.4 years, 11 males out of 17) and 50+ years (mean age: 56.4±5.3 years, 12 males out of 27). All subjects underwent a complete 2D echocardiographic and Doppler assessment with negative results. None of the healthy subjects showed more than grade 1 valvular regurgitation or significant stenosis on any valves.

Results
The mean LV radial (RS), circumferential (CS), longitudinal (LS), 3D (3DS) and area (AS) strains proved to be 27.7±8.8%, −28.6±4.8%, −16.9±2.4%, 30.2±8.8% and −41.4±4.9%, respectively. While global LV-RS and LV-3DS showed an increase-decrease-increase pattern, LV-CS, LV-LS and LV-AS were somewhat lower in older ages. Only global LV-LS showed gender-dependency with higher values in females. Although somewhat higher LV-RS and LV-3DS and lower LV-CS, LV-LS and LV-AS could be measured in males, clear gender-dependency could not be detected in different age decades. The measurements were performed between 2011 and 2017, when feasibility of 3DSTE analysis improved as the operators gained experience. The number of adequate measurements proved to be 172 out of 296 (58% success ratio) for the overall time-period. For the last year, the number of good quality measurements, therefore the success ratio improved significantly (47 out of 59, 80%, p=0.001).

Conclusions
Normal reference values of 3DSTE-derived global, segmental, mean segmental and regional LV strains have been determined in healthy adult subjects based on real-life clinical experience. Age-, gender- and functional non-uniformity of LV strains were also defined.

Funding Acknowledgement
Type of funding source: None
3D right ventricular ejection fraction and longitudinal strain are independent predictors of major adverse cardiovascular events in patients with rrhythmogenic right ventricular cardiomyopathy
Authors: Hosseini L , Sadeghpour A , Maleki M , Alizadehasl A , Rezaeian N , Zadehbagheri F , Bakhshandeh H , Hosseini S 
Published: November 2020

Abstract

Introduction
Evaluation of right ventricular (RV) function is essential in the follow up of patients with arrhythmogenic right ventricular cardiomyopathy (ARVC). Role of advance echocardiography including 3D transthoracic echocardiography (3DTTE) for evaluation of 3D RV function and RV longitudinal strain in predicting prognosis in ARVC patients, has not been well investigated.

Purpose
We aimed to evaluate 3DTTE parameters in predicting major advance cardiovascular events (MACE) defined as ventricular arrhythmia, cardiac hospitalization, heart transplantation, and death in ARVC patients.

Methods
Forty-eight definite ARVC subjects based on the 2010 Task force criteria were evaluated with standard 2D transthoracic echocardiography (2DTTE) and 3DTTE. Patients with poor image quality were excluded. RV function was evaluated by 2D and 3D TTE including: fractional area change (FAC), RV global and free wall longitudinal strain (RV2DGLS and RV2DFWLS) and 3D RV ejection fraction (RV3DEF), RV global and free wall longitudinal strain (RV3DGLS, and RV3DFWLS). The patients were followed up for a median period of 12 months (6–18 months) to record MACE.

Results
Forty-eight patients with mean age =38.5±14 years; 79.2% male, and mean RV3DEF =30.33%, were included. During the mean follow up 12 months, 12 patients (25%, with mean RV3DEF = 24.8±9%) experienced MACE whereas mean RV3EF in patient without any cardiovascular events during follow up was 34.21±9%. The most common causes of hospitalization were arrhythmia, right-sided heart failure, and RV clot as the following: Ventricular arrhythmia in 7 patients (14.6%, with mean RV3DEF = 29.01±8.82%), RV clot in 2 cases (4.2%, with mean RV3DEF = 20.2%), right-sided heart failure in 3 patients (6.3%, with mean RV3DEF = 16.83±3.6%) that 2 of them (2.1%, with mean RV3DEF = 14.58±0.63) underwent heart transplantation.
Logistic regression analysis revealed RV3DTTE (p-value = 0.03, OR=0.90, CI: 0.82–0.99), RV3DGLS (p-value = 0.05, OR=1.27, CI: 0.99–1.61) and RV3DFWLS (p-value = 0.01, OR=1.29, CI: 1.05–1.59), predicted cardiac adverse events, but there were no significant association between RV2DGLS, RV2DEWLS and FAC with MACE.

Conclusion
RV3DEF, RV3DGLS, and RV3DFWLS were powerful predictors of morbidity and mortality and can be useful as a valuable method in the prediction of major cardiovascular complications in ARVC patients.

Funding Acknowledgement
Type of funding source: None
Feasibility of intracardiac echocardiography for assessment of renal blood flow in humans
Authors: Stojadinovic P , Sramko M , Wichterle D , Peichl P , Cihak R , Kautzner J 
Published: November 2020

Abstract

Background
Intracardiac echocardiography (ICE) is routinely used for guiding cardiac ablation procedures. However, the potential of ICE for measurement of renal artery (RA) blood flow (RABF) has not been fully exploited.

Aims
To investigate the feasibility of ICE for the assessment of RABF and to evaluate its reproducibility in humans.

Methods
The study included 15 patients undergoing catheter ablation of atrial fibrillation guided by ICE (age: 61±14 years, body mass index: 30±5 kg/m2, left ventricular ejection fraction: 57±6%, serum creatinine: 80±29 μmol/l). During sinus rhythm, the ICE probe was withdrawn from the right atrium to the inferior vena cava until the right RA with its ostium became visible. Blood flow in the RA was visualized by colour flow mapping. The RA diameter was measured at 10 mm from the ostium. RABF at this location was measured by pulse wave Doppler. Velocity-time integral (VTI) was delineated manually and averaged over five consecutive beats. RABF was calculated by the formula: RABF = (RA radius)2 x π x VTI x heart rate. To assess reproducibility of the method, the ICE probe was repositioned in the right atrium and the measurement of RABF was repeated by the same operator.

Results
The right RA was visualized in all 15 patients. No procedure-related clinical complications occurred. The mean RA radius was 2.5±0.4 mm. In all cases, the angle of incidence during the measurement of VTI was &lt;5°. The mean RABF was 403±163 and 399±156 ml/min during the first and the second measurement, respectively (p=0.7 by a paired t-test, coefficient of variation 5,3±3,8%; see Figure for Bland-Altman plot).

Conclusions
This study demonstrated that measurement of RABF by ICE is feasible and has reasonable intra-observer reproducibility. The method can be used to study RABF during various interventions and hemodynamic conditions.
Figure 1. Intra-individual reproducibility

Funding Acknowledgement
Type of funding source: None