bluuebunny/crossref_metadata_2025_split huggingface dataset:
Study on Suitable Analysis Method for HIV-1 Non-catalytic Integrase Inhibitor
Authors: Park Ki Hoon , Kim Minjee , Bae Seoung Eun , Lee Hee Jung , Kim Kyung-Chang , Choi Byeong Sun , Kim Young Bong 
Published: December 2020

Abstract
Background: Integrase (IN) is an essential protein for HIV replication that catalyzes insertion of the reverse-transcribed viral genome into the host chromosome during the early steps of viral infection. Highly active anti-retroviral therapy (HAART) is a HIV/AIDS treatment method that combines three or more antiviral drugs often formulated from compounds that inhibit the activities of viral reverse transcriptase and protease enzymes. Early IN inhibitors (INIs) mainly serve as integrase strand transfer inhibitors (INSTI) that disrupt strand transfer by binding the catalytic core domain (CCD) of IN. However, mutations of IN can confer resistance to INSTI. Therefore, non-catalytic integrase inhibitors (NCINI) have been developed as next-generation INIs. Methods: In this study, we evaluated and compared the activity of INSTI and NCINI according to the analysis method. Antiviral activity was compared using p24 ELISA with MT2 cell and TZM-bl luciferase system with TZM-bl cell. Each drug was serially diluted and treated to MT2 and TZM-b1 cells, infected with HIV-1 AD8 strain and incubated for 5 and 2 days, respectively. Additionally, to analyze properties of INSTI and NCINI, transfer inhibition assay and 3'-processing inhibition assay were performed. Results: During screening of INIs using the p24 ELISA and TZM-bl luciferase systems, we found an inconsistent result with INSTI and NCINI drugs. Following infection of MT2 and TZM-bl cells with T-tropic HIV-1 strain, both INSTI and NCINI treatments induced significant p24 reduction in MT2 cells. However, NCINI showed no antiviral activity in the TZM-bl luciferase system, indicating that this widely used and convenient antiretroviral assay is not suitable for screening of NCINI compounds that target the second round of HIV-1 replication. Conclusion: Accordingly, we recommend application of other assay procedures, such as p24 ELISA or reverse transcription activity, in lieu of the TZM-bl luciferase system for preliminary NCINI drug screening. Utilization of appropriate analytical methods based on underlying mechanisms is necessary for accurate assessment of drug efficacy.
It’s a woman’s thing: Gender roles sustaining the practice of female genital mutilation among the Kassena-Nankana of northern Ghana
Authors: AKWEONGO PATRICIA , Jackson Elizabeth F. , Appiah-Yeboah Shirley Afua , Sakeah Evelyn , Phillips James F. 
Published: December 2020

Abstract
The practice of female genital mutilation (FGM) in traditional African societies is grounded in traditions of patriarchy that subjugate women. It is widely assumed that approaches to eradicating the practice must therefore focus on women’s empowerment and changing gender roles. MethodsThis paper presents findings from a qualitative study of the FGM beliefs and opinions of men and women in Kassena-Nankana District of northern Ghana. Data are analyzed from twenty-two focus group panels of young women, young men, reproductive age women, and male social leaders. ResultsThe social systemic influences on FGM decision-making are complex. Men represent exogenous sources of social influence on FGM decisions through their gender roles in the patriarchal system. As such, their FGM decision influence is more prominent for uncircumcised brides at the time of marriage than for FGM decisions concerning unmarried adolescents. Women in extended family compounds are relatively prominent as immediate sources of influence on FGM decision-making for both brides and adolescents. Circumcised women are the main source of social support for the practice, which they exercise through peer pressure in concert with co-wives. Junior wives entering a polygynous marriage or a large extended family are particularly vulnerable to this pressure. Men are less influential and more open to suggestions of eliminating the practice of FGM than women. ConclusionFindings attest to the need for social research on ways to involve men in the promotion of FGM abandonment, building on their apparent openness to social change. Investigation is also needed on ways to marshal women’s social networks for offsetting their extended family familial roles in sustaining FGM practices.
miR-335-5p suppresses gastric cancer progression by targeting MAPK10
Authors: Gao Yi , Wang Yanfeng , Wang Xiaofei , Zhao Changan , Wang Fenghui , Du Juan , Zhang Huahua , Shi Haiyan , Feng Yun , Li Dan , Yan Jing , Yao Yan , Hu Weihong , Ding Ruxin , Zhang Mengjie , Wang Lumin , Huang Chen , Zhang Jing 
Published: December 2020

Abstract
Background: Recent studies have established the roles of microRNAs (miRNAs) in cancer progression. The aberrant expression of miR-335-5p has been reported in many cancers, including gastric cancer (GC). In this study, the precise roles of miR-335-5p in GC as well as the molecular mechanisms underlying its effects, including the role of its target MAPK10, were evaluated.Methods: Quantitative real-time PCR was used to evaluate miR-335-5p levels in GC cell lines and tissues. MTT and colony formation assays were used to detect cell proliferation, and Transwell and wound-healing assays were used to evaluate the invasion and migration of GC cells. The correlation between levels of miR-335-5p and the cell cycle-related target gene mitogen-activated protein kinase 10 (MAPK10) in GC was analyzed. In addition, the candidate target was evaluated by a luciferase reporter assay, qRT-PCR, and western blotting.Results: The levels of miR-335-5p were downregulated in GC tissues and cell lines. Furthermore, miR-335-5p inhibited the proliferation and migration of GC cells and induced apoptosis. Additionally, miR-335-5p arrested the cell cycle at the G1/S phase in GC cells in vitro. Levels of miR-335-5p and the cell cycle-related target gene MAPK10 in GC were correlated, and MAPK10 was directly targeted by miR-335-5p.Conclusions: These data suggest that miR-335-5p is a tumor suppressor and acts via MAPK10 to inhibit GC progression.
Evaluation of the Solar Quiet Reference Field (SQRF) Model for Space Weather Applications in the South America Magnetic Anomaly
Authors: Chen Sony Su , Denardini Clezio Marcos , Resende Láysa C. A. , Chagas Ronan A. J. , Moro Juliano , Silva Régia P. , Carmo Carolina S. , Picanço Giorgio A. S. 
Published: December 2020

Abstract
In the present work, we evaluate the accuracy of the Solar Quiet Reference Field (SQRF) model for estimating and predicting the geomagnetic solar quiet (Sq) daily field variation in the South America Magnetic Anomaly (SAMA) region. This model is based on the data set of fluxgate magnetometers from 12 magnetic stations of the Embrace Magnetometer Network (Embrace MagNet) from 2010 to 2018. The model predicts the monthly average horizontal field of the geomagnetic quiet (Sq-H) daily variation solving a set of equations for the specified geographic coordinates in terms of the solar cycle activity, the day of the year, and the universal time. We carried out two comparisons between the prediction and observational data of the Sq-H field. The first part attempts to evaluate the accuracy for estimating the Sq-H field over Medianeira (25.30°S, 54.11°W, dip angle: -33.45°) by using linear interpolation on the SQRF coefficients. The second part of the analysis attempts to evaluate the accuracy for predicting the quiet daily field variation over Cachoeira Paulista (22.70°S, 45.01°W, dip angle: -38.48°). The results of the prediction for both locations show that this empirical model presents a good agreement with the Sq-H field obtained from the magnetic field data. The accuracy of the SQRF model (high correlation, r >0.9) provides a high potential for estimating and predicting geomagnetic quiet daily field variation for space weather applications.
Chloroplast Genome Variation and Phylogenetic Relationships of Atractylodes species
Authors: wang yiheng , Wang Sheng , Liu Yanlei , Yuan Qingjun , Sun Jiahui , Guo Lanping 
Published: December 2020

Abstract
Background：Atractylodes DC is the basic original plant of the widely used herbal medicines “Baizhu” and “Cangzhu” and an endemic genus in East Asia. Species within the genus have minor morphological differences, and the universal DNA barcodes cannot clearly distinguish the systemic relationship or identify the species of the genus. In order to solve these question, we sequenced the chloroplast genomes of all species of Atractylodes using high-throughput sequencing.Results: The results indicate that the chloroplast genome of Atractylodes has a typical quadripartite structure and ranges from 152,294 bp (A. carlinoides) to 153,261 bp (A. macrocephala) in size. The genome of all species contains 113 genes, including 79 protein-coding genes, 30 transfer RNA genes and four ribosomal RNA genes. Four hotspots, rpl22-rps19-rpl2, psbM-trnD, trnR-trnT(GGU), and trnT(UGU)-trnL, and a total of 42-47 simple sequence repeats (SSR) were identified as the most promising potentially variable makers for species delimitation and population genetic studies. Phylogenetic analyses of the whole chloroplast genomes indicate that Atractylodes is a clade within the tribe Cynareae; Atractylodes species form a monophyly that clearly reflects the relationship within the genus. Conclusions: Our study included investigations of the sequences and structural genomic variations, phylogenetics and mutation dynamics of Atractylodes chloroplast genomes and will facilitate future studies in population genetics, taxonomy and species identification.
Qigong mind-body program for caregivers of cancer patients: Design of a pilot three-arm randomized clinical trial
Authors: Shani Pinky , Raeesi Kristin , Walter Eli , Lewis Kai , Wang Wanyi , Cohen Lorenzo , Yeh Gloria Y , Lengacher Cecile A. , Wayne Peter M. 
Published: December 2020

Abstract
Background: Informal caregivers, often family and friends, experience significant psychological and physical distress leading to reductions in health and quality of life (QOL). Mind-body interventions focused on caregivers are often limited and do not address multiple barriers, including caregivers’ economic, geographic, and time constraints. Translation of in-person, community-based interventions to internet-based delivery may offer greater accessibility for caregivers, leading to increased adherence. Methods: Caring for Caregivers with Mind-Body Exercise implements a three-arm, pilot, randomized controlled trial to evaluate the feasibility of delivering a Qigong intervention (Eight Brocades) to cancer caregivers. A total of 54 cancer caregivers will be randomized into one of three 12-week programs: (1) community-based Qigong; (2) internet-based Qigong; or (3) a self-care control group. Study specific aims include 1) Modify intervention content for online delivery; 2) Evaluate the feasibility of recruiting and retaining cancer caregivers into a 12-week clinical trial; and 3) Evaluate the feasibility of collecting and managing data, and the suitability of questionnaires for this population. Several outcomes will be assessed, including caregiver QOL, caregiver burden, caregiver distress, perceived social support, physical function, and cognitive function. A 6-month follow-up will also assess longer-term changes in QOL and psychosocial wellbeing.Discussion: Findings will be used to inform the design and conduct of a large-scale comparative effectiveness trial evaluating caregivers who received Qigong training delivered through community-based vs internet-based programs. A finding that either or both programs are effective would inform care and options for caregivers.Trial registration: NCT04019301; registered on July 15, 2019; clinicaltrials.gov.
Overcoming Bioprocess Bottlenecks in the Large-Scale Expansion of High Quality hiPSC Aggregates in Vertical-Wheel Stirred Suspension Bioreactors
Authors: Borys Breanna S , Dang Tiffany , So Tania , Rohani Leili , Revay Tamas , Walsh Tylor , Thompson Madalynn , Argiropoulos Bob , Rancourt Derrick E. , Jung Sunghoon , Hashimura Yas , Lee Brian , Kallos Michael S. 
Published: December 2020

Abstract
BackgroundHuman induced pluripotent stem cells (hiPSCs) hold enormous promise in accelerating breakthroughs in understanding human development, drug screening, disease modeling and cell and gene therapies. Their potential, however, has been bottlenecked in a mostly laboratory setting due to bioprocess challenges in the scale-up of large quantities of high-quality cells for clinical and manufacturing purposes. While several studies have investigated the production of hiPSCs in bioreactors, the use of conventional horizontal-impeller, paddle and rocking-wave mixing mechanisms have demonstrated unfavourable hydrodynamic environments for hiPSC growth and quality maintenance. This study focused on using computational fluid dynamics (CFD) modeling to aid in characterizing and optimizing the use of vertical-wheel bioreactors for hiPSC production.MethodsThe vertical-wheel bioreactor was modeled with CFD simulation software Fluent at agitation rates between 20rpm and 100rpm. These models produced fluid flow patterns that mapped out a hydrodynamic environment to guide in the development of hiPSC inoculation and in-vessel aggregate dissociation protocols. The effect of single-cell inoculation on aggregate formation and growth was tested at select CFD modeled agitation rates and feeding regimes in the vertical-wheel bioreactor. An in-vessel dissociation protocol was developed through the testing of various proteolytic enzymes and agitation exposure times.ResultsCFD modeling demonstrated the unique flow pattern and homogeneous distribution of hydrodynamic forces produced in the vertical-wheel bioreactor, making it the opportune environment for systematic bioprocess optimization of hiPSC expansion. We developed a scalable, single-cell inoculation protocol for the culture of hiPSCs as aggregates in vertical-wheel bioreactors, achieving over 30-fold expansion in 6 days without sacrificing cell quality. We have also provided the first published protocol for in-vessel hiPSC aggregate dissociation, permitting the entire bioreactor volume to be harvested into single-cells for serial passaging into larger scale reactors. Importantly, the cells harvested and re-inoculated into scaled-up vertical-wheel bioreactors not only maintained consistent growth kinetics, they maintained a normal karyotype and pluripotent characterization and function.ConclusionsTaken together, these protocols provide a feasible solution for the culture of high quality hiPSCs at a clinical and manufacturing scale by overcoming some of the major documented bioprocess bottlenecks.
Salting-Out Induced Liquid-Liquid Microextraction for Alogliptin Benzoate Determination in Human Plasma by HPLC/UV
Authors: Hammad Sherin Farouk , Abdallah Inas , Bedair Alaa , Mansour Fotouh 
Published: December 2020

Abstract
Salting-out induced liquid-liquid microextraction method has been developed for plasma sample treatment before determination of alogliptin by high performance liquid chromatography with UV detection. Several parameters were optimized to achieve maximum enrichment, including type of extractant, volume of extractant, type of anion, type of cation, salt amount and pH. The optimum conditions were attained using 500 µL of acetonitrile, added to 1 mL of aqueous sample containing 250 mg of sodium chloride at pH 12. An RP-HPLC method was developed and validated according to the International Conference on Harmonization guidelines M10. The method was linear in the concentration range of 0.1 to 50 µg/mL (correlation coefficient= 0.997). The limit of detection was 0.019 µg/mL and limit of quantitation was 0.06 µg/mL. The method was accurate and precise with an average % recovery of 99.7% and a % relative standard deviation ranging between 1.5 and 2.5. These results showed that the salting-out induced liquid-liquid microextraction methods could be better than other sample preparation protocols in terms of sensitivity, easiness, solvent consumption and waste reduction.
USP22-dependent accumulation of lipidomes drives hepatocellular carcinoma progression by stabilizing PPARγ
Authors: Ning Zhen , Guo Xin , Liu Xiaolong , Lu Chang , Wang Aman , Wang Xiaolin , Wang Wen , Chen Huan , Qin Wangshu , Liu Xinyu , Zhou Lina , Ma Chi , Du Jian , Lin Zhikun , Lou Haifeng , Otkur Wuxiyar , Qi Huan , Chen Di , Xia Tian , Liu Jiwei , Tan Guang , Xu Guowang , Piao Hai-long 
Published: December 2020

Abstract
Elevated de novo lipogenesis (DNL) is considered to be a crucial factor in hepatocellular carcinoma (HCC) development. However, the molecular mechanism for its occurrence in HCC is still unclear. Herein, we identified ubiquitin-specific protease 22 (USP22) as a key regulator for de novo fatty acid synthesis, which directly interacts with, deubiquitinates and stabilizes PPARγ through K48-linked deubiquitination, and in turn, this stabilization increases ACC and ACLY transcription. In addition, we found that USP22 promoted the de novo synthesis of fatty acid labeling from glucose tracers. USP22-dysregulated de novo fatty acid synthesis contributes to HCC progression, but USP22 was functionality suppressed by inhibiting the expression of PPARγ, ACLY, or ACC in in vitro cell proliferation and in vivo tumorigenesis experiments. In HCC, USP22 expression positively correlates with PPARγ expression, and simultaneously, high expression of USP22 and PPARγ or USP22, ACC and ACLY is associated with a poor prognosis. Taken together, we identified a previously undescribed USP22-regulated lipogenesis molecular mechanism that involves the PPARγ-ACLY/ACC axis in HCC tumorigenesis and provide a rationale for therapeutic targeting of lipogenesis via USP22 inhibition.
How close simple EAs’ optimal solutions can approach global optima: experience from water distribution system design problems
Authors: Yin Hang , Xu Chengna , Yao Fengyi , Chu Shipeng , Huang Yuan 
Published: December 2020

Abstract
An issue regarding near-optimal solutions identified by evolutionary algorithms (EAs) is that their absolute deviations from the global optima are often unknown, and hence an EA's performance in handling real-world problems remains unclear. To this end, this paper investigates how close optimal solutions from simple EAs can approach the global optimal for water distribution system (WDS) design problems through an experiment with the number of decision variables ranging from 21 to 3,400. Three simple EAs are considered: the standard differential evolution, the standard genetic algorithm and the creeping genetic algorithm (CGA). The CGA consistently identifies optimal solutions with deviations lower than 50% to the global optimal, even for the WDS with 3,400 decision variables, but the performance of the other two EAs is heavily case study dependent. Results obtained build knowledge regarding these simple EAs’ ability in handling WDS design problems with different sizes. We must acknowledge that these results are conditioned on the WDSs and the parameterization strategies used, and future studies should focus on generalizing the findings obtained in this paper.
Trend in river water quality: tracking the overall impacts of climate change and human activities on water quality in the Dez River Basin
Authors: Mahmoodi Nariman , Osati Khaled , Salajegheh Ali , Saravi Mohsen Mohseni 
Published: December 2020

Abstract
A perceptible degradation in water quality complicates safe water supply for drinking and irrigation purposes. Therefore, this study aims at monitoring water quality changes and effective factors in the Dez River Basin, which are required to manage water resources effectively. To this end, the common influence of flow rate changes on water quality was separated by implementing seasonal Mann–Kendall test on residuals resulting from the LOWESS test. The results show that after adjusting the effects of seasonality and streamflow fluctuations, significant positive trends in most water quality parameters are still observed. It emphasizes the role of other factors controlling river water quality in the basin. Comparison of the trends of modified quality parameter time series (residuals) in different subbasins having natural or mad-made conditions, with or without significant groundwater resources, shows almost the same presented trends in water quality. This supports that, overall, minor changes occurred in land use, groundwater table, and environmental and human factors with no important influences on presented trends in water quality. Our analyses show that overall reduction in precipitation as well as positive trends in temperature and evaporation led to intensified streamflow variations, explaining the main changes in the river water quality of the basin.
Influence of thermal hydrolysis treatment on chemical speciation and bioleaching behavior of heavy metals in the sewage sludge
Authors: Zheng Jinxin , Qiu Chunsheng , Wang Chenchen , Zhao Jiaqi , Wang Dong , Liu Nannan , Wang Shaopo , Yu Jingjie , Sun Liping 
Published: December 2020

Abstract
In this study, the transformation of chemical speciation of Cr, Mn, As and Cd in the sewage sludge before and after thermal hydrolysis treatment was investigated using modified BCR method. The effect of thermal hydrolysis treatment and chemical speciation change on the subsequent bioleaching behavior was also researched. The results showed that the concentrations of Cr, Mn, As and Cd in oxidizable fraction decreased in the sludge treated by thermal hydrolysis. Meanwhile, the proportions of Cr, Mn and As in the mobile fractions (acid-soluble/exchangeable and reducible fraction) all decreased, while Cd was concentrated in the sludge treated by thermal hydrolysis. The final pH value of bioleached sludge treated by thermal hydrolysis was lower than that in the bioleached raw sewage sludge. And faster increase of oxidation-reduction potential (ORP) was also found in the bioleaching process of the sludge treated by thermal hydrolysis. The removal percentage of Mn and Cd increased in the bioleached sludge treated by thermal hydrolysis. Thermal hydrolysis treatment can promote the bioleaching to some extent. Furthermore, the environmental risk of Cr, Mn, As and Cd in the bioleached sludge treated by thermal hydrolysis was all alleviated according to risk assessment analysis compared with the bioleached raw sewage sludge.