bluuebunny/crossref_metadata_2025_split huggingface dataset:
Unravelling the antimicrobial action of antidepressants on gut commensal microbes
Authors: Ait Chait Yasmina , Mottawea Walid , Tompkins Thomas A. , Hammami Riadh 
Published: October 2020

AbstractOver the past decade, there has been increasing evidence highlighting the implication of the gut microbiota in a variety of brain disorders such as depression, anxiety, and schizophrenia. Studies have shown that depression affects the stability of gut microbiota, but the impact of antidepressant treatments on microbiota structure and metabolism remains underexplored. In this study, we investigated the in vitro antimicrobial activity of antidepressants from different therapeutic classes against representative strains of human gut microbiota. Six different antidepressants: phenelzine, venlafaxine, desipramine, bupropion, aripiprazole and (S)-citalopram have been tested for their antimicrobial activity against 12 commensal bacterial strains using agar well diffusion, microbroth dilution method, and colony counting. The data revealed an important antimicrobial activity (bacteriostatic or bactericidal) of different antidepressants against the tested strains, with desipramine and aripiprazole being the most inhibitory. Strains affiliating to most dominant phyla of human microbiota such as Akkermansia muciniphila, Bifidobacterium animalis and Bacteroides fragilis were significantly altered, with minimum inhibitory concentrations (MICs) ranged from 75 to 800 μg/mL. A significant reduction in bacterial viability was observed, reaching 5 logs cycle reductions with tested MICs ranged from 400 to 600 μg/mL. Our findings demonstrate that gut microbiota could be altered in response to antidepressant drugs.
Linking structural and compositional changes in archaeological human bone collagen: an FTIR-ATR approach
Authors: Martínez Cortizas Antonio , López-Costas Olalla 
Published: October 2020

AbstractCollagen is the main structural and most abundant protein in the human body, and it is routinely extracted and analysed in scientific archaeology. Its degree of preservation is, therefore, crucial and several approaches are used to determine it. Spectroscopic techniques provide a cost-effective, non-destructive method to investigate the molecular structure, especially when combined with multivariate statistics (chemometric approach). In this study, we used FTIR-ATR spectroscopy to characterise collagen extracted from skeletons recovered from necropoleis in NW Spain spanning from the Bronze Age to eighteenth century AD. Principal components analysis was performed on a selection of bands and structural equation models (SEM) were developed to relate the collagen quality indicators to collagen structural change. Four principal components represented: (i) Cp1, transformations of the backbone protein with a residual increase in proteoglycans; (ii) Cp2, protein transformations not accompanied by changes in proteoglycans abundance; (iii) Cp3, variations in aliphatic side chains and (iv) Cp4, absorption of the OH of carbohydrates and amide. Highly explanatory SEM models were obtained for the traditional collagen quality indicators (collagen yield, C, N, C:N), but no relationship was found between quality and δ13C and δ15N ratios. The observed decrease in C and N content and increase in C:N ratios is controlled by the degradation of protein backbone components and the relative preservation of carbon-rich compounds, proteoglycans and, to a lesser extent, aliphatic moieties. Our results suggest that FTIR-ATR is an ideal technique for collagen characterization/pre-screening for palaeodiet, mobility and radiocarbon research.
Development of a holistic urban heat island evaluation methodology
Authors: Sangiorgio Valentino , Fiorito Francesco , Santamouris Mattheos 
Published: October 2020

AbstractUrban Heat Island (UHI) phenomenon concerns the development of higher ambient temperatures in urban districts compared to the surrounding rural areas. Several studies investigated the influence of individual parameters in the UHI phenomenon, on the other hand, an exhaustive study that quantifies the influence of each parameter in the resulting UHI is missing in the related literature. This paper proposes a new index aimed at quantifying the hazard of the absolute maximum UHI intensity in urban districts during the Summer season by taking all the parameters influencing the phenomenon into account. In addition, for the first time, the influence of each parameter has been quantified. City albedo and the presence of greenery represent the most important characteristics with an influence of 29% and 21%. Population density, width of streets, canyon orientation and building height has a medium influence of 12%, 10%, 9% and 8% respectively. The remaining parameters have an overall influence of 11%. These results are achieved by exploiting three synergistically related techniques: the Analytic Hierarchy Processes to analyse the parameters involved in the UHI phenomenon; a state-of-the-art technique to acquire a large set of data; and an optimization procedure involving a involving a Jackknife resampling approach to calibrate the index by exploiting the effective UHI intensity measured in a total of 41 urban districts and 35 European Cities.
Jasmonic acid and ERF family genes are involved in chilling sensitivity and seed browning of pepper fruit after harvest
Authors: Lee Jeong Gu , Yi Gibum , Seo Jieun , Kang Byoung-Cheorl , Choi Jeong Hee , Lee Eun Jin 
Published: October 2020

AbstractPepper (Capsicum annuumL.) fruit is sensitive to temperatures below 10 °C, which severely diminish fruit quality during cold chain distribution. Seed browning was a major chilling symptom in 36 genotypes ofC. annuumfruit screened after storage at 2 °C for 3 weeks. Among them, pepper fruits of chilling-insensitive ‘UZB-GJG-1999–51’ and -sensitive ‘C00562’ were treated at 2 °C for 0 or 24 h, respectively. Analyses of integrated transcriptome-metabolome and relative gene expression in seeds obtained from the two genotypes were conducted to identify key factors involved in the seed browning induced by chilling. The relative contents of branched-chain amino acids such as leucine, isoleucine, and valine were significantly increased after chilling. Transcriptome identification showed 3,140 differentially expressed genes (log twofold change > 1.0 and FDR-correctedpvalue < 0.05) affected by chilling between the two genotypes. Particularly, genes related to jasmonic acid synthesis and signaling were differentially expressed. A regulatory network of jasmonic acid synthesis and signaling, and regulation of ERF family genes might contribute to chilling response in pepper fruit. The results of this study may help facilitate further studies to develop chilling-insensitive peppers and could be a basis for improving postharvest fruit quality.
The level of antimicrobial resistance of sewage isolates is higher than that of river isolates in different Escherichia coli lineages
Authors: Ogura Yoshitoshi , Ueda Takuya , Nukazawa Kei , Hiroki Hayate , Xie Hui , Arimizu Yoko , Hayashi Tetsuya , Suzuki Yoshihiro 
Published: October 2020

AbstractThe dissemination of antimicrobial-resistant bacteria in environmental water is an emerging concern in medical and industrial settings. Here, we analysed the antimicrobial resistance of Escherichia coli isolates from river water and sewage by the use of a combined experimental phenotypic and whole-genome-based genetic approach. Among the 283 tested strains, 52 were phenotypically resistant to one or more antimicrobial agents. The E. coli isolates from the river and sewage samples were phylogenetically indistinguishable, and the antimicrobial-resistant strains were dispersedly distributed in a whole-genome-based phylogenetic tree. The prevalence of antimicrobial-resistant strains as well as the number of antimicrobials to which they were resistant were higher in sewage samples than in river samples. Antimicrobial resistance genes were more frequently detected in strains from sewage samples than in those from river samples. We also found that 16 river isolates that were classified as Escherichia cryptic clade V were susceptible to all the antimicrobials tested and were negative for antimicrobial resistance genes. Our results suggest that E. coli strains may acquire antimicrobial resistance genes more frequently and/or antimicrobial-resistant E. coli strains may have higher rates of accumulation and positive selection in sewage than in rivers, irrespective of their phylogenetic distribution.
Fano resonance based defected 1D phononic crystal for highly sensitive gas sensing applications
Authors: Zaki Shrouk E. , Mehaney Ahmed , Hassanein Hekmat M. , Aly Arafa H. 
Published: October 2020

AbstractThe defected acoustic band gap materials are promising a new generation of sensing technology based on layered cavities. We introduced a novel 1D defected phononic crystal (1D-DPC) as a high-sensitive gas sensor based on the Fano resonance transmitted window. Our designed (Lead–Epoxy) 1D-DPC multilayer has filled with a defect layer with different gases at different temperatures. In this study, Fano resonance—based acoustic band gap engineering has used to detect several gases such as O2, CO2, NH3, and CH4. For the first time, Fano resonance peaks appeared in the proposed gas sensor structures which attributed to high sensitivity, Q-factor, and figure-of-merit values for all gases. Also, the relation between the Fano resonance frequency and acoustic properties of gases at different temperatures has been studied in detail. The effect of the damping rate on the sensitivity of the gas sensor shows a linear behavior for CO2, O2, and NH3. Further, we introduced the effect of temperature on the damping rate of the incident waves inside the 1D-DPC gas sensor. The highest sensitivity and figure of merit were obtained for O2 of 292 MHz/(kg/m3) and 647 m3/Kg, respectively. While the highest figure-of-merit value of 60 °C−1 at 30 °C was attributed to O2. The transfer matrix method is used for calculating the transmission coefficient of the incident acoustic wave. We believe that the proposed sensor can be experimentally implemented.
Mechanism of the enhanced coercivity for the dual-main-phase Ce–Fe–B magnet
Authors: Han Rui , Chen Hongsheng , Zhou Dong , Shi Xiaoning , Xu Jiyuan , Dong Shengzhi , Zhu Minggang , Li Wei 
Published: October 2020

AbstractThe high coercivity of Nd–Fe–B magnets can also be obtained in the Ce–Fe–B magnets fabricated via the dual-main-phase (DMP) method in which the high abundance Ce was used to substitute Nd(Pr). The inhomogeneous distributions of the matrix grains in the DMP magnet play a key role in the enhanced magnetic performance. Compared with the single-phase magnet, more grain boundary phases encapsulating the matrix 2:14:1 grain are formed in the DMP magnet, which reduce the exchange coupling between adjacent magnetic grains. The switching field distribution and the interaction field distribution of the Ce–Fe–B magnets were determined by the first-order-reversal curves (FORC). The switching field peaks around 6 kOe, 11 kOe and 12 kOe in the FORC distribution indicate that three major reversal components coexist for the DMP magnet. The overlapp of the second and third switching field peaks reveals the presence of a pinning interaction within individual magnetic grains with a core–shell structure, which further improve the coercivity of the magnet.
The circadian rhythm and core gene Period2 regulate the chemotherapy effect and multidrug resistance of ovarian cancer through the PI3K signaling pathway
Authors: Wang Zhaoxia , Wang Honghong , Guo Hongrui , Li Fengyan , Wu Weiwei , Zhang Sanyuan , Wang Tong 
Published: October 2020

Abstract
Background: Ovarian cancer is the most lethal cancer in the female reproductive system. It has been shown that ‘time chemotherapy’ of ovarian cancer has an important impact on the chemotherapy effect and prognosis of patients, but the specific mechanism is not known. Methods: We designed a case–control study in strict accordance with epidemiological principles. We collected resection samples of ovarian cancer patients who worked night-shifts and those who did not, and analyzed the differences in protein expression. Through construction of a normal/circadian-rhythm disorder model of ovarian cancer in nude mice, we explored the molecular mechanism of a ‘biological clock’ rhythm on treatment of ovarian cancer. Results: Expression of interleukin (IL)-6, programmed cell death receptor-1 (PD-1) and programmed death ligand 1 (PD-L1) increased, and expression of tumor necrosis factor (TNF)-α, Period 1 (Per1) and Period 2 (Per2) decreased in the night-shift group. Methylation of CpG islands in the promoter of Per2 could result in its decreased expression in SKOV3/DDP (Cisplatin) cells. Dysrhythmia of the circadian clock: (i) had a negative effect on the chemotherapy effect against ovarian cancer; (ii) affected expression of immune factors and the phosphoinositide 3-kinase/protein kinase B (PI3K/Akt) signaling pathway. Conclusion: The Per2 gene can affect the drug resistance of ovarian cancer by inhibiting the PI3K/Akt signaling pathway and then acting on its downstream drug-resistance factors, thereby providing a new target for ovarian cancer treatment.
Mapping the stellar age of the Milky Way bulge with the VVV
Authors: Surot F. , Valenti E. , Gonzalez O. A. , Zoccali M. , Sökmen E. , Hidalgo S. L. , Minniti D. 
Published: October 2020

Context. A detailed study of the Galactic bulge stellar population necessarily requires an accurate representation of the interstellar extinction, particularly toward the Galactic plane and center, where severe and differential reddening is expected to vary on sub-arcmin scales. Although recent infrared surveys have addressed this problem by providing extinction maps across the whole Galactic bulge area, dereddened color-magnitude diagrams near the plane and center appear systematically undercorrected, prompting the need for higher resolution. These undercorrections affect any stellar study sensitive to color (e.g., star formation history analyses via color-magnitude diagram fitting), either making them inaccurate or limiting them to small and relatively stable extinction windows where this value is low and better constrained.
Aims. This study is aimed at providing a high-resolution (2 arcmin to ∼10 arcsec) color excess map for the VVV bulge area in J − Ks color.
Methods. We used the MW-BULGE-PSFPHOT catalogs, sampling ∼300 deg2 across the Galactic bulge (|l| < 10° and −10° < b <  5°) to isolate a sample of red clump and red giant branch stars, for which we calculated the average J − Ks color in a fine spatial grid in (l, b) space.
Results. We obtained an E(J − Ks) map spanning the VVV bulge area of roughly 300 deg2, with the equivalent of a resolution between ∼1 arcmin for bulge outskirts (l <  6°) to below 20 arcsec within the central |l| < 1°, and below 10 arcsec for the innermost area (|l| < 1° and |b| < 3°).
Schwere Nahrungsmittelallergie: Können Biologika helfen?
Authors: vom Hove Maike , Prenzel Freerk 
Published: October 2020

ZUSAMMENFASSUNGOmalizumab ist das bisher am meisten untersuchte Biologikum bei Nahrungsmittelallergie. Bisherige Studien und Fallberichte sprechen für eine protektive Wirkung von Omalizumab bei schwerer Nahrungsmittelallergie mit rezidivierenden Anaphylaxien nach akzidenteller Ingestion der Allergene. Eine Hinzunahme von Omalizumab zur oralen Toleranzinduktion kann die Nebenwirkungen vermindern, die vertragene Allergenmenge erhöhen und die Zeit bis zum Erreichen der Erhaltungsdosis reduzieren. Ob dieser Effekt auch ohne eine kontinuierliche Gabe von langfristiger Dauer ist, müssen weitere Untersuchungen zeigen.
The National Endoscopy Database (NED) Automated Performance Reports to Improve Quality Outcomes Trial (APRIQOT) randomized controlled trial design
Authors: Catlow Jamie , Sharp Linda , Kasim Adetayo , Lu Liya , Brookes Matthew , Lee Tom , McCarthy Stephen , Gray Joanne , Sniehotta Falko , Deane Jill , Rutter Matt 
Published: October 2020

Abstract
Background and study aims Colonoscopists with low polyp detection have higher post colonoscopy colorectal cancer incidence and mortality rates. The United Kingdom’s National Endoscopy Database (NED) automatically captures patient level data in real time and provides endoscopy key performance indicators (KPI) at a national, endoscopy center, and individual level. Using an electronic behavior change intervention, the primary objective of this study is to assess if automated feedback of endoscopist and endoscopy center-level optimal procedure-adjusted detection KPI (opadKPI) improves polyp detection performance.
Methods This multicenter, prospective, cluster-randomized controlled trial is randomizing NHS endoscopy centres to either intervention or control. The intervention is targeted at independent colonoscopists and each center’s endoscopy lead. The intervention reports are evidence-based from endoscopist qualitative interviews and informed by psychological theories of behavior. NED automatically creates monthly reports providing an opadKPI, using mean number of polyps, and an action plan. The primary outcome is opadKPI comparing endoscopists in intervention and control centers at 9 months. Secondary outcomes include other KPI and proximal detection measures at 9 and 12 months. A nested histological validation study will correlate opadKPI to adenoma detection rate at the center level. A cost-effectiveness and budget impact analysis will be undertaken.
Conclusion If the intervention is efficacious and cost-effective, we will showcase the potential of this learning health system, which can be implemented at local and national levels to improve colonoscopy quality, and demonstrate that an automated system that collects, analyses, and disseminates real-time clinical data can deliver evidence- and theory-informed feedback.
Comparison of the Remineralizing Effect of Brushing with Aloe vera versus Fluoride Toothpaste
Authors: Al Haddad Teresa , Khoury Elie , Farhat Mchayleh Nada 
Published: October 2020

AbstractObjectives The aim of the present in vitro study is to compare the remineralization brushing effect of three toothpastes and Aloe vera (AV) gel.Materials and Methods Forty sound extracted teeth were placed in a demineralizing solution for 4 days and randomly assigned to four groups: group A: 1,450-ppm fluoride toothpaste; group B: AV nonfluoridated toothpaste; group C: AV 1,000-ppm fluoridated toothpaste; and group D: AV gel. A 3-minute pH cycling was performed twice a day for each group for 12 days. Specimens were analyzed before and after by scanning electron microscope—energy dispersive X-ray.Statistical Analysis The outcomes were analyzed by Kolmogorov–Smirnov’s tests, repeated-measures analyses of variance followed by univariate analyses, and Bonferroni’s multiple comparisons tests to compare the calcium-to-phosphorus (Ca:P) ratio within time among toothpaste groups.Results Following remineralization, the Ca:P ratio increased in all groups. The difference of the Ca:P ratio was not significant between groups C, D, and A. The mean ratio was significantly lower in group B (p-value = 0.026).Conclusions The AV gel demonstrated a remineralization capacity equal to that of the 1,450-ppm fluoride toothpaste. In contrast, fluoride-free AV toothpaste showed a lower remineralization efficiency. Further studies are required to understand its mechanism.
Pharmacokinetics and Pharmacodynamics of Emicizumab in Persons with Hemophilia A with Factor VIII Inhibitors: HAVEN 1 Study
Authors: Schmitt Christophe , Adamkewicz Joanne I. , Xu Jin , Petry Claire , Catalani Olivier , Young Guy , Negrier Claude , Callaghan Michael U. , Levy Gallia G. 
Published: October 2020

AbstractEmicizumab, a bispecific monoclonal antibody, bridges activated factor IX (FIXa) and FX, replacing the function of missing FVIIIa to restore effective hemostasis in persons with hemophilia A (PwHA). Here we assess pharmacokinetic (PK) and pharmacodynamic (PD) biomarkers in PwHA with FVIII inhibitors in the Phase III HAVEN 1 study (NCT02622321). Blood samples from 112 PwHA receiving 1.5 mg/kg once-weekly subcutaneous emicizumab were analyzed at central laboratories. Emicizumab concentrations for PK analysis were measured via validated immunoassay. PD effects were assessed using FVIII chromogenic activity assay containing human factors (Hyphen Biophen FVIII:C), and by FXIa-triggered thrombin generation (TG). Activated partial thromboplastin time (aPTT), prothrombin time (PT), antigen levels of FIX and FX, fibrinogen, D-dimer, and prothrombin fragment 1.2 (PF1.2) levels were determined. Emicizumab trough concentrations ≥ 50 µg/mL were maintained throughout the study. FVIII-like activity and TG (peak height) correlated with emicizumab concentrations and remained above 20 U/dL and 100 nM, respectively, with a weekly maintenance dose, theoretically converting persons with severe hemophilia A to a mild disease phenotype. aPTT was normalized at subtherapeutic concentrations of emicizumab. Plasma concentrations of target antigens FIX and FX were not significantly affected by emicizumab treatment; nor were fibrinogen, PT (international normalized ratio), D-dimer, or PF1.2. The PK profile of once-weekly emicizumab in HAVEN 1 provides sustained therapeutic plasma levels, consistent with population PK models. Both the PK profile and the PD and safety biomarkers are consistent with the established efficacy of emicizumab prophylaxis in PwHA with FVIII inhibitors.
Correlation between Dentoalveolar Heights and Vertical Skeletal Patterns in Class I Malocclusion in Ethnic Javanese
Authors: Ardani I. Gusti Aju Wahju , Pratiknjo Ike Sesaria , Djaharu’ddin Irwadi 
Published: October 2020

Abstract
Objectives Vertical proportions of the face are important determining factors for diagnosis and planning appropriate orthodontic treatment. Orthodontic patients have different vertical and sagittal skeletal discrepancies, as well as associated varying degrees of dentoalveolar compensations. Dentoalveolar is a functional component of the jaw; it plays a role in occlusal dynamics and forms sagittal and vertical maxilla–mandibula relationships. This study aims to analyze the relationship between dentoalveolar heights and several vertical skeletal patterns in patients with Class I malocclusion in ethnic Javanese.
Materials and Methods The sample consisted of lateral cephalograms of 75 patients (18 samples were male, and 57 were female). Determined by inclusion and exclusion criteria, the participants were selected from an initial sample of 196 patients with skeletal Class I malocclusion (sella–nasion–A and B [ANB] = 1–4 degrees). Cephalometric analysis was performed using OrthoVision2017 digital software. This analysis measured upper anterior dental height (UADH), upper posterior dental height (UPDH), lower anterior dental height (LADH), lower posterior dental height (LPDH), ANB angle, sella–nasion and mandibular plane (SN-MP), sella–nasion and palatal plane (SN-PP), palatal plane and mandibular plane (PP-MP), Frankfort horizontal plane and mandibular plane (FH-MP), sella to gonion (S-Go), articulare to gonion (Ar-Go), nasion to menton (N-Me), nasion to anterior nasal spine (N-ANS), and anterior nasal spine to menton (ANS-Me). Pearson correlation test was used to assess correlations among all variables (p < 0.05).
Results Significant correlations were observed between dentoalveolar heights and SN-MP, S-Go, Ar-Go, N-Me, and ANS-Me (p < 0.05).
Conclusions Patients with Class I malocclusion in ethnic Javanese exhibit a significant correlation between dentoalveolar and vertical skeletal patterns. UPDH and/or LPDH have a significantly positive correlation with SN-MP, S-Go, Ar-Go, N-Me, and ANS-Me. The orthodontic correction of the decreased or increased facial height included either the extrusion or intrusion of the anterior or posterior teeth in different ways.