bluuebunny/crossref_metadata_2025_split huggingface dataset:
Consumption of Oleic Acid During Matriphagy in Free-Living Nematodes Alleviates the Toxic Effects of the Bacterial Metabolite Violacein
Authors: Yoon Kyoung-hye , Lee Tong Young , Moon Je-Hyun , Choi Seong Yeol , Choi Yun Ji , Mitchell Robert J. , Il Lee Jin 
Published: May 2020

AbstractMaternal behaviors benefit the survival of young, contributing directly to the mother’s reproductive fitness. An extreme form of this is seen in matriphagy, when a mother performs the ultimate sacrifice and offers her body as a meal for her young. Whether matriphagy offers only a single energy-rich meal or another possible benefit to the young is unknown. Here, we characterized the toxicity of a bacterial secondary metabolite, namely, violacein, in Caenorhabditis elegans and found it is not only toxic towards adults, but also arrests growth and development of C. elegans larvae. To counteract this, C. elegans resorted to matriphagy, with the mothers holding their eggs within their bodies and hatching the young larvae internally, which eventually led to the mothers’ death. This violacein-induced matriphagy alleviated some of the toxic effects of violacein, allowing a portion of the internally-hatched young to bypass developmental arrest. Using genetic and pharmacological experiments, we found the consumption of oleate, a monounsaturated fatty acid produced by the mother, during matriphagy is partially responsible. As such, our study provides experimental evidence of why such a drastic and peculiar maternal behavior may have arisen in nematode natural habitats.
Genome-wide screens reveal Escherichia coli genes required for growth of T1-like phage LL5 and V5-like phage LL12
Authors: Piya Denish , Lessor Lauren , Koehler Brian , Stonecipher Ashley , Cahill Jesse , Gill Jason J. 
Published: May 2020

AbstractThe host factor requirements of phages and mechanisms of mutational phage insensitivity must be characterized for rational design of phage cocktails. To characterize host dependencies of two novel Escherichia coli phages, the T1-like siphophage LL5 and the V5-like myophage LL12, forward genetic screens were conducted against the Keio collection, a library of single non-essential gene deletions in E. coli str. BW25113. These screens and subsequent experiments identified genes required by phages LL5 and LL12. E. coli mutants deficient in heptose II and the phosphoryl substituent of heptose I of the inner core lipopolysaccharide (LPS) were unable to propagate phage LL5, as were mutants deficient in the outer membrane protein TolC. Mutants lacking glucose I of the LPS outer core failed to propagate LL12. Two additional genes encoding cytoplasmic chaperones, PpiB and SecB, were found to be required for efficient propagation of phage LL5, but not LL12. This screening approach may be useful for identifying host factors dependencies of phages, which would provide valuable information for their potential use as therapeutics and for phage engineering.
Effect of mechanical combined with electromagnetic stirring on the dispersity of carbon fibers in the aluminum matrix
Authors: Li Guanglong , Qu Yingdong , Yang Yaohua , Chen Ruirun , Zhou Qiwen , Li Rongde 
Published: May 2020

AbstractIn order to improve the uneven distribution of carbon fibers (CFs) in the matrix by traditional single mechanical stirring, mechanical combined with electromagnetic (M-E) stirring was used to prepare short carbon fibers reinforced aluminum matrix (Csf/Al) composites. The 3-D flow field of aluminum melt under mechanical/M-E stirring were calculated and compared. The calculation results show that the complexity of flow field under M-E stirring could be significantly enhanced relative to a single mechanical stirring, especially there was a strong melt flow near the crucible wall due to the skin effect. It was found that except the inertial force under mechanical stirring and the melt collision with the crucible walls, CFs were also subjected to the electromagnetic force and the oscillating flow between the eddy currents, which would promote the dispersity of the short CFs in the composites. The experimental results are consistent with the calculation results. The experimental results show that the distribution of CFs at each position in the composite samples prepared under M-E stirring was stable. The uniform distribution of CFs in the composites would play an important role in improving the overall performance of the Csf/Al composites.
Association between initial dialytic modalities and the risks of mortality, infection death, and cardiovascular events: A nationwide population-based cohort study
Authors: Tu Yi-Ran , Tsai Tsung-Yu , Lin Ming-Shyan , Tu Kun-Hua , Lee Cheng-Chia , Wu Victor Chien-Chia , Hsu Hsiang-Hao , Chang Ming-Yang , Tian Ya-Chung , Chang Chih-Hsiang 
Published: May 2020

AbstractTo date, few studies have been conducted to pairwise compare the prognosis of peritoneal dialysis (PD), unplanned PD, and unplanned hemodialysis (HD). We analyzed longitudinal data from Taiwan’s National Health Insurance Research Database. We included 45,165 patients whose initial dialytic modality was PD or unplanned HD between January 1, 2001 and December 31, 2013. We divided the patients into three groups according to their initial dialytic modalities. The primary outcomes were all-cause mortality and death from infection during 1-year follow up. The risks of all-cause mortality and infection death were higher in the unplanned PD group than in the planned PD group (hazard ratio [HR] 1.43, 95% confidence interval [CI] 1.28–1.60; HR 1.54, 95% CI 1.32–1.80). Likewise, the risks of all-cause mortality and infection death were higher in the unplanned HD group (HR 1.64, 95% CI 1.48–1.82; HR 1.85, 95% CI 1.61–2.13). Furthermore, the risks of all-cause mortality and infection death were also higher in the unplanned HD group than in the unplanned PD group (HR 1.15, 95% CI 1.07–1.23; HR 1.20, 95% CI 1.09–1.32). In conclusion, our study demonstrates that patients whose initial modality was planned PD or unplanned PD may have better clinical outcomes than those whose initial modality was unplanned HD.
A Novel Hydrogenation of Nitroarene Compounds with Multi Wall Carbon Nanotube Supported Palladium/Copper Nanoparticles (PdCu@MWCNT NPs) in Aqueous Medium
Authors: Göksu Haydar , Zengin Nursefa , Burhan Hakan , Cellat Kemal , Şen Fatih 
Published: May 2020

AbstractA novel nanocatalyst, multi-wall carbon nanotube supported palladium/copper (PdCu@MWCNT) nanoparticles, was synthesized for the reduction of nitroarene compounds. Characterization of the nanocatalyst was achieved by XRD, XPS, TEM, and Raman spectroscopy analysis. In this study, the hydrogenation of nitroarenes to primary amine compounds was achieved in aqueous medium at room temperature. The aniline derivatives were synthesized with high yields at mild conditions via novel PdCu@MWCNT nanocatalyst. The conversion of nitroarenes to amine derivatives was accomplished at 99% efficiency. In addition to its high activity, the PdCu@MWCNT catalyst was determined to be stable and reusable after the 3rd consecutive use for the reaction and provided 99% conversion of various compounds in the reduction reaction.
Obesity and Diabetes in an Arab population: Role of Adenovirus 36 Infection
Authors: Lessan Nader , Saradalekshmi Koramannil R. , Alkaf Budour , Majeed Maria , Barakat Maha T. , Lee Zendra P. L. , Atkinson Richard L 
Published: May 2020

AbstractPrior infection with adenovirus 36 (Adv36) has been associated with increased adiposity, improved insulin sensitivity, and a lower prevalence of diabetes. This study investigated the prevalence of Adv36 seropositivity and its association with obesity and diabetes among adults attending a diabetes centre in the UAE.Participants (N = 973) with different weight and glucose tolerance categories were recruited. Adv36 seropositivity (Adv36 + ) was assessed using ELISA. Differences among groups were analyzed using statistical tests as appropriate to the data. Prevalence of Adv36+ in the study population was 47%, with no significant difference in obese and non-obese subgroups (42.5% vs 49.6% respectively; p=non-significant). Females were more likely to be Adv36+ compared to males (odds ratio 1.78; 95% CI 1.36–2.32, p < 0.001). We found no significant association between Adv36 seropositivity and different BMI categories, or glucose tolerance status. In our population, the effect of Adv36 infection on lipid profile varied between healthy individuals and individuals with obesity. Adv36 infection is more prevalent in the UAE than in other countries but has no association with obesity. Our study found that females were more likely to be Adv36 positive regardless of weight or diabetes status.
Functional analysis of an essential Ran-binding protein gene, CpRbp1, from the chestnut blight fungus Cryphonectria parasitica using heterokaryon rescue
Authors: Ko Yo-Han , Choi So-Yeon , So Kum-Kang , Kim Jung-Mi , Chun Jeesun , Kim Dae-Hyuk 
Published: May 2020

AbstractA Ran binding protein (RanBP) homolog, CpRbp1, from Cryphonectria parasitica, has been identified as a protein that is affected by hypovirus infection or tannic acid supplementation. In this study, functional analyses of CpRbp1 were performed by constructing a knockout mutant and analyzing the resulting heterokaryon. Transformation-mediated gene replacement resulted in two putative CpRbp1-null mutants and genotype analyses identified these two mutants as heterokaryotic transformants consisting of two types of nuclei, one with the wild-type CpRbp1 allele and another with the CpRbp1-null mutant allele. Although stable mycelial growth of the heterokaryotic transformant was observed on selective medium containing hygromycin B, neither germination nor growth of the resulting conidia, which were single-cell monokaryotic progeny, was observed on the medium. In trans complementation of heterokaryons using a full-length wild-type allele of the CpRbp1 gene resulted in complemented transformants. These transformants sporulated single-cell monokaryotic conidia that were able to grow on media selective for replacing and/or complementing markers. These results clearly indicate that CpRbp1 is an essential gene, and heterokaryons allowed the fungus to maintain lethal CpRbp1-null mutant nuclei. Moreover, in trans complementation of heterokaryons using chimeric structures of the CpRbp1 gene allowed for analysis of its functional domains, which was previously hampered due to the lethality of the gene. In addition, in trans complementation using heterologous RanBP genes from Aspergillus nidulans was successful, suggesting that the function of RanBP is conserved during evolution. Furthermore, in trans complementation allowed for functional analyses of lethal orthologs. This study demonstrates that our fungal heterokaryon system can be applied effectively to determine whether a gene of interest is essential, perform functional analyses of a lethal gene, and analyze corresponding heterologous genes.
Alteration of Protein Binding Affinities by Aqueous Two-Phase Systems Revealed by Pressure Perturbation
Authors: Oliva Rosario , Banerjee Sudeshna , Cinar Hasan , Ehrt Christiane , Winter Roland 
Published: May 2020

AbstractInteractions between proteins and ligands, which are fundamental to many biochemical processes essential to life, are mostly studied at dilute buffer conditions. The effects of the highly crowded nature of biological cells and the effects of liquid-liquid phase separation inducing biomolecular droplet formation as a means of membrane-less compartmentalization have been largely neglected in protein binding studies. We investigated the binding of a small ligand (ANS) to one of the most multifunctional proteins, bovine serum albumin (BSA) in an aqueous two-phase system (ATPS) composed of PEG and Dextran. Also, aiming to shed more light on differences in binding mode compared to the neat buffer data, we examined the effect of high hydrostatic pressure (HHP) on the binding process. We observe a marked effect of the ATPS on the binding characteristics of BSA. Not only the binding constants change in the ATPS system, but also the integrity of binding sites is partially lost, which is most likely due to soft enthalpic interactions of the BSA with components in the dense droplet phase of the ATPS. Using pressure modulation, differences in binding sites could be unravelled by their different volumetric and hydration properties. Regarding the vital biological relevance of the study, we notice that extreme biological environments, such as HHP, can markedly affect the binding characteristics of proteins. Hence, organisms experiencing high-pressure stress in the deep sea need to finely adjust the volume changes of their biochemical reactions in cellulo.
Morphological and functional parameters of left atrial appendage play a greater role in atrial fibrillation relapse after radiofrequency ablation
Authors: Tian Xin , Zhang Xue-Jing , Yuan Ying-Fang , Li Cai-Ying , Zhou Li-Xia , Gao Bu-Lang 
Published: May 2020

AbstractThis study was to quantitatively investigate the role of morphological and functional parameters of the left atrium (LA) and left atrial appendage (LAA) with 256-slice spiral computed tomography (CT) in the recurrence of atrial fibrillation (AF) after radiofrequency ablation (RFA). Eighty-three patients with AF who underwent RFA for the first time were divided into the recurrence (n = 27) and non-recurrence (n = 56) groups. All patients underwent a 256-slice spiral CT examination before the operation. The clinical data and quantitative measurement of the morphology and functional parameters of the LA and LAA were analyzed, including the maximal and minimal volume, ejection fraction and volume, and volume strain of LAA and LA (LAAVmax, LAAVmin, LAAEF, LAAEV, and LAA-VS, LAVmax, LAVmin, LAEF, LAEV and LA-VS, respectively). The CHA2DS2-VASc score and the proportion of patients with heart failure were significantly (P < 0.05) higher in the recurrence than non-recurrence group. The LAAVmax, LAAVmin, LAVmax, LAVmin, LAAV and LAV were all significantly greater in the recurrence than non-recurrence group (P < 0.05), and the perimeter, major and minor axes of LAA orifice and LAA depth were also significantly greater in the recurrence than non-recurrence group. The LAAEF, LAEF and LAA-VS were significantly (P < 0.05) lower in the recurrence than non-recurrence group (P < 0.05). Heart failure, CHA2DS2-VASC score, LAEF, LAV, LAAEF and LAA-VS were univariately significant (P < 0.05) risk factors for AF recurrence after ablation. Multivariate analysis revealed LAAEF (HR: 0.790, 95% CI: 0.657–0.950, P = 0.012) and LAAV (HR: 1.160, 95% CI: 1.095–1.229, P <0.001) to be two significant independent predictors of recurrence. ROC curve analysis showed that LAAEF <44.68% had the highest predictive value for recurrence after radiofrequency ablation, with the sensitivity of 90% and specificity of 67.4%, whereas LAA volume >9.25 ml had the highest predictive value for AF recurrence after RFA, with the sensitivity of 85.2% and specificity of 67.9%. In conclusion, the volume of left atrium, volume and morphology of left atrial appendage have all significantly increased while the ejection fraction and volume strain of left atrium and left atrial appendage have both significantly decreased in recurrence than in non-recurrence after radiofrequency ablation. The ejection fraction and volume of left atrial appendage are significant independent predictors of atrial fibrillation recurrence after radiofrequency ablation.
Immune response in fluid therapy with crystalloids of different ratios or colloid for rats in haemorrhagic shock
Authors: Seo Eun-Hye , Park Hyun Jun , Piao Li-Yun , Lee Ji Yeon , Oh Chung-Sik , Kim Seong-Hyop 
Published: May 2020

AbstractThis study investigated the association between different ratios of balanced salt based-crystalloid (PLASMA SOLUTION-A [CJ HealthCare, Seoul, Korea]) (the ratios of crystalloid for blood loss, 1:1, 1:2 and 1:3) or balanced salt-based colloid (VOLULYTE 6% [Fresenius Kabi, Germany]) (the ratio of colloid for blood loss, 1:1) to restore blood loss and immune response in rats with haemorrhagic shock. About 50% of total estimated blood volume was removed after anaesthesia. The fluid was administered for resuscitation after exsanguination, according to the type of fluid and the ratios of exsanguinated volume and fluid volume for resuscitation. After sacrifice, expression of immune cells in blood and tissues was evaluated. Histological analyses and syndecan-1 immunohistochemistry assays were performed on tissues. Endothelial damage according to syndecan-1 and cytokine levels in blood was also assessed. Fluid resuscitation with same, two-fold, or three-fold volumes of crystalloid, or same volume of colloid, to treat haemorrhagic shock in rats resulted in a similar increase in blood pressure. The expression of neutrophils in blood decreased significantly after colloid administration, compared to before exsanguination. Syndecan-1 expression increased after exsanguination and fluid resuscitation in all groups, without any significant difference. In conclusion, same volume of balanced salt-based crystalloid for blood loss was enough to restore BP at the choice of fluid for the management of haemorrhagic shock in the rats, compared with different ratios of crystalloid or same volume of colloid, on the aspect of immune response.
The frequency of pulmonary hypertension in newborn with intrauterine growth restriction
Authors: Abbas Ghulam , Shah Shahid , Hanif Muhammad , Shah Abid , Rehman Anees ur , Tahir Sana , Nayab Komal , Asghar Arzoo 
Published: May 2020

AbstractIntrauterine growth restriction (IUGR) is a clinical definition applied to neonates born with clinical features of malnutrition and in-utero growth retardation irrespective of their birth weight percentile. This study was aimed to determine the frequency of pulmonary hypertension (PH) in neonates with IUGR. In this descriptive cross-sectional study, we followed 96 neonates with IUGR (≤28 days) and 38 neonates without IUGR born in the department of the neonatal intensive care unit children hospital complex Multan, Pakistan. We analyzed certain factors such as gender, gestational age (GA) (weeks), birth weight (BW in kg), weight percentile (WP) for GA, meconium aspiration syndrome (MAS), birth asphyxia (BA) and respiratory distress syndrome (RDS) for pulmonary hypertension (PH) in IUGR and non-IUGR group. GA was measured by the Ballard scoring system. Echocardiography was performed for all patients by the pediatric cardiologist to measure pulmonary arterial (PA) pressure using Bernoulli’s equation. Out of total 96 IUGR neonates, 33.3% (n = 32) suffered from PH, of which 65.3% (n = 18) were male and 43.7% (n = 14) were female. The percentages of IUGR neonates with BA, MAS and RDS were 34.4%, 18.8% and 22.9% respectively. The data were analyzed using the SPSS-16 software to test the statistical significance of the results. A p-value less than 0.05 was considered significant. When the chi-square test was applied, it depicted that MAS was significantly associated with PH in IUGR neonates (p = 0.0001) compared to non-IUGR neonates. Our findings suggested an increased chance of PH in IUGR neonates and MAS may be a strong factor.
Temporal Convolutional Networks for the Advance Prediction of ENSO
Authors: Yan Jining , Mu Lin , Wang Lizhe , Ranjan Rajiv , Zomaya Albert Y. 
Published: May 2020

AbstractEl Niño-Southern Oscillation (ENSO), which is one of the main drivers of Earth’s inter-annual climate variability, often causes a wide range of climate anomalies, and the advance prediction of ENSO is always an important and challenging scientific issue. Since a unified and complete ENSO theory has yet to be established, people often use related indicators, such as the Niño 3.4 index and southern oscillation index (SOI), to predict the development trends of ENSO through appropriate numerical simulation models. However, because the ENSO phenomenon is a highly complex and dynamic model and the Niño 3.4 index and SOI mix many low- and high-frequency components, the prediction accuracy of current popular numerical prediction methods is not high. Therefore, this paper proposed the ensemble empirical mode decomposition-temporal convolutional network (EEMD-TCN) hybrid approach, which decomposes the highly variable Niño 3.4 index and SOI into relatively flat subcomponents and then uses the TCN model to predict each subcomponent in advance, finally combining the sub-prediction results to obtain the final ENSO prediction results. Niño 3.4 index and SOI reanalysis data from 1871 to 1973 were used for model training, and the data for 1984–2019 were predicted 1 month, 3 months, 6 months, and 12 months in advance. The results show that the accuracy of the 1-month-lead Niño 3.4 index prediction was the highest, the 12-month-lead SOI prediction was the slowest, and the correlation coefficient between the worst SOI prediction result and the actual value reached 0.6406. Furthermore, the overall prediction accuracy on the Niño 3.4 index was better than that on the SOI, which may have occurred because the SOI contains too many high-frequency components, making prediction difficult. The results of comparative experiments with the TCN, LSTM, and EEMD-LSTM methods showed that the EEMD-TCN provides the best overall prediction of both the Niño 3.4 index and SOI in the 1-, 3-, 6-, and 12-month-lead predictions among all the methods considered. This result means that the TCN approach performs well in the advance prediction of ENSO and will be of great guiding significance in studying it.
Woody Plant Encroachment has a Larger Impact than Climate Change on Dryland Water Budgets
Authors: Schreiner-McGraw Adam P. , Vivoni Enrique R. , Ajami Hoori , Sala Osvaldo E. , Throop Heather L. , Peters Debra P. C. 
Published: May 2020

AbstractWoody plant encroachment (WPE) into grasslands is a global phenomenon that is associated with land degradation via xerification, which replaces grasses with shrubs and bare soil patches. It remains uncertain how the global processes of WPE and climate change may combine to impact water availability for ecosystems. Using a process-based model constrained by watershed observations, our results suggest that both xerification and climate change augment groundwater recharge by increasing channel transmission losses at the expense of plant available water. Conversion from grasslands to shrublands without creating additional bare soil, however, reduces transmission losses. Model simulations considering both WPE and climate change are used to assess their relative roles in a late 21stcentury condition. Results indicate that changes in focused channel recharge are determined primarily by the WPE pathway. As a result, WPE should be given consideration when assessing the vulnerability of groundwater aquifers to climate change.