bluuebunny/crossref_metadata_2025_split huggingface dataset:
Selective hepatitis B and D virus entry inhibitors from the group of pentacyclic lupane-type betulin-derived triterpenoids
Authors: Kirstgen Michael , Lowjaga Kira Alessandra Alicia Theresa , Müller Simon Franz , Goldmann Nora , Lehmann Felix , Alakurtti Sami , Yli-Kauhaluoma Jari , Glebe Dieter , Geyer Joachim 
Published: December 2020

AbstractCurrent treatment options against hepatitis B and D virus (HBV/HDV) infections have only limited curative effects. Identification of Na+/taurocholate co-transporting polypeptide (NTCP) as the high-affinity hepatic receptor for both viruses in 2012 enables target-based development of HBV/HDV cell-entry inhibitors. Many studies already identified appropriate NTCP inhibitors. However, most of them interfere with NTCP’s physiological function as a hepatic bile acid transporter. To overcome this drawback, the present study aimed to find compounds that specifically block HBV/HDV binding to NTCP without affecting its transporter function. A novel assay was conceptualized to screen for both in parallel; virus binding to NTCP (measured via binding of a preS1-derived peptide of the large HBV/HDV envelope protein) and bile acid transport via NTCP. Hits were subsequently validated by in vitro HDV infection studies using NTCP-HepG2 cells. Derivatives of the birch-derived pentacyclic lupane-type triterpenoid betulin revealed clear NTCP inhibitory potency and selectivity for the virus receptor function of NTCP. Best performing compounds in both aspects were 2, 6, 19, and 25. In conclusion, betulin derivatives show clear structure–activity relationships for potent and selective inhibition of the HBV/HDV virus receptor function of NTCP without tackling its physiological bile acid transport function and therefore are promising drug candidates.
Studying the effect of lockdown using epidemiological modelling of COVID-19 and a quantum computational approach using the Ising spin interaction
Authors: Padhi Anshuman , Pradhan Sudev , Sahoo Pragna Paramita , Suresh Kalyani , Behera Bikash K. , Panigrahi Prasanta K. 
Published: December 2020

AbstractCOVID-19 is a respiratory tract infection that can range from being mild to fatal. In India, the countrywide lockdown has been imposed since 24th march 2020, and has got multiple extensions with different guidelines for each phase. Among various models of epidemiology, we use the SIR(D) model to analyze the extent to which this multi-phased lockdown has been active in ‘flattening the curve’ and lower the threat. Analyzing the effect of lockdown on the infection may provide a better insight into the evolution of epidemic while implementing the quarantine procedures as well as improving the healthcare facilities. For accurate modelling, incorporating various parameters along with sophisticated computational facilities are required. Parallel to SIRD modelling, we tend to compare it with the Ising model and derive a quantum circuit that incorporates the rate of infection and rate of recovery, etc as its parameters. The probabilistic plots obtained from the circuit qualitatively resemble the shape of the curve for the spread of Coronavirus. We also demonstrate how the curve flattens when the lockdown is imposed. This kind of quantum computational approach can be useful in reducing space and time complexities of a huge amount of information related to the epidemic.
Effects of disturbances by forest elephants on diversity of trees and insects in tropical rainforests on Mount Cameroon
Authors: Maicher Vincent , Delabye Sylvain , Murkwe Mercy , Doležal Jiří , Altman Jan , Kobe Ishmeal N. , Desmist Julie , Fokam Eric B. , Pyrcz Tomasz , Tropek Robert 
Published: December 2020

AbstractNatural disturbances are essential for tropical forests biodiversity. In the Afrotropics, megaherbivores have played a key role before their recent decline. Contrastingly to savanna elephants, forest elephants’ impact on ecosystems remains poorly studied. Few decades ago, forests on Mount Cameroon were divided by lava flows, not being crossed by a local population of forest elephants until now. We assessed communities of trees, butterflies and two guilds of moths in the disturbed and undisturbed forests split by the longest lava flow. We surveyed 32 plots, recording 2025 trees of 97 species, and 7853 insects of 437 species. The disturbed forests differed in reduced tree density, height, and high canopy cover, and in increased DBH. Forest elephants’ selective browsing and foraging also decreased tree species richness and altered their composition. The elephant disturbance increased butterfly species richness and had various effects on species richness and composition of the insect groups. These changes were likely caused by disturbance-driven alterations of habitats and species composition of trees. Moreover, the abandonment of forests by elephants led to local declines of range-restricted butterflies. The recent declines of forest elephants across the Afrotropics probably caused similar changes in forest biodiversity and should be reflected by conservation actions.
Mechanical and structural characterisation of the dural venous sinuses
Authors: Walsh Darragh R. , Lynch James J. , O’ Connor David T. , Newport David T. , Mulvihill John J. E. 
Published: December 2020

AbstractThe dural venous sinuses play an integral role in draining venous blood from the cranial cavity. As a result of the sinuses anatomical location, they are of significant importance when evaluating the mechanopathology of traumatic brain injury (TBI). Despite the importance of the dural venous sinuses in normal neurophysiology, no mechanical analyses have been conducted on the tissues. In this study, we conduct mechanical and structural analysis on porcine dural venous sinus tissue to help elucidate the tissues’ function in healthy and diseased conditions. With longitudinal elastic moduli values ranging from 33 to 58 MPa, we demonstrate that the sinuses exhibit higher mechanical stiffness than that of native dural tissue, which may be of interest to the field of TBI modelling. Furthermore, by employing histological staining and a colour deconvolution protocol, we show that the sinuses have a collagen-dominant extracellular matrix, with collagen area fractions ranging from 84 to 94%, which likely explains the tissue’s large mechanical stiffness. In summary, we provide the first investigation of the dural venous sinus mechanical behaviour with accompanying structural analysis, which may aid in understanding TBI mechanopathology.
DendroScan: an open source tool to conduct comparative statistical tests and dendrogrammatic analyses on particle morphometry
Authors: Dürig T. , Schmidt L. S. , White J. D. L. , Bowman M. H. 
Published: December 2020

AbstractQuantitative shape analysis of juvenile pyroclasts is applied in volcanology to reconstruct the dynamics and styles of eruptions, and to explore the details of tephra transport, dispersal, and emplacement. Morphometric analyses often include comparison of multiple data sets with a set of dimensionless shape parameters. Here we present “DendroScan”, an open source Matlab program that provides the user with all the multivariate statistical methods needed to produce such morphometric comparisons. Serving as a statistical “toolbox”, DendroScan conducts Levene-, t-, and equivalence tests, presenting the results in ad hoc interpretable graphs. Furthermore, it is designed to conduct dendrogrammatic analyses of particle morphometry, a recently developed approach for the inter-comparison of multiple morphometric data sets. DendroScan produces tree diagrams, in which the analysed samples are sorted according to their morphometric dissimilarity, allowing the user to identify, e.g., samples that are statistically equivalent. To demonstrate DendroScan’s potential, ten experimental samples are compared with volcanic ash samples generated by the Havre 2012 deep-sea eruption in the Kermadec arc (New Zealand). We show how, using DendroScan-based results, information on the eruptive mechanism can be inferred, and how the cooling history of the experimental melt is reflected in the dissimilarity of thermally granulated fragments.
Impacts of low-head hydropower plants on cyprinid-dominated fish assemblages in Lithuanian rivers
Authors: Virbickas Tomas , Vezza Paolo , Kriaučiūnienė Jūratė , Akstinas Vytautas , Šarauskienė Diana , Steponėnas Andrius 
Published: December 2020

AbstractThe meso-scale habitat simulation model MesoHABSIM was applied in three Lithuanian lowland rivers to study the effect of low-head hydropower plants (HPPs) on the fish habitats. Stream flow time series on a daily scale for the period 1970–2015 were used to describe flow regime downstream of HPPs for periods before and after their installation. Conditional habitat suitability criteria were developed for 4 species of cyprinid fish, schneider (Alburnoides bipunctatus), dace (Leuciscus leuciscus), roach (Rutilus rutilus) and vimba (Vimba vimba) to simulate their available habitat at different water discharges. Modelling results showed that HPPs have a significant impact on habitat availability in the low flow period in dry years below HPPs due to insufficient released flow. The environmental flow, as prescribed by the Lithuanian national law, is estimated between 80 and 95% exceedance probability of the mean minimum discharge of 30 days. This flow leads to a significant reduction in frequency and duration of available suitable habitats for vimba and schneider during low flow period. The roach habitat is the least affected. The results of habitat modelling are in line with the actual data on the occurrence and relative abundance of considered fish species in the studied river stretches. A general comparison of the relative abundance of modelled fish species in 42 natural river stretches and 20 stretches below the HPPs also showed that the relative abundance of roach is significantly higher, and that of schneider is significantly lower in river sections below the HPPs than the abundance in natural river sections. All results indicate that the current environmental flow does not secure survival of certain fish species. The applicability of the average low flow release during summer could be a plausible alternative to the current environmental flow in order to maintain ecosystem health and services.
Zika virus exposure affects neuron-glia communication in the hippocampal slices of adult rats
Authors: Bobermin Larissa Daniele , Quincozes-Santos André , Santos Camila Leite , Varela Ana Paula M. , Teixeira Thais F. , Wartchow Krista Minéia , Lissner Lílian Juliana , da Silva Amanda , Thomaz Natalie K. , Santi Lucélia , Beys-da-Silva Walter O. , Roehe Paulo M. , Sesterheim Patrícia , Guimarães Jorge A. , Gonçalves Carlos-Alberto , Souza Diogo Onofre 
Published: December 2020

AbstractZika virus (ZIKV) infection during pregnancy was associated with microcephaly in neonates, but clinical and experimental evidence indicate that ZIKV also causes neurological complications in adults. However, the changes in neuron-glial communication, which is essential for brain homeostasis, are still unknown. Here, we report that hippocampal slices from adult rats exposed acutely to ZIKV showed significant cellular alterations regarding to redox homeostasis, inflammatory process, neurotrophic functions and molecular signalling pathways associated with neurons and glial cells. Our findings support the hypothesis that ZIKV is highly neurotropic and its infection readily induces an inflammatory response, characterized by an increased expression and/or release of pro-inflammatory cytokines. We also observed changes in neural parameters, such as adenosine receptor A2a expression, as well as in the release of brain-derived neurotrophic factor and neuron-specific enolase, indicating plasticity synaptic impairment/neuronal damage. In addition, ZIKV induced a glial commitment, with alterations in specific and functional parameters such as aquaporin 4 expression, S100B secretion and glutathione synthesis. ZIKV also induced p21 senescence-associated gene expression, indicating that ZIKV may induce early senescence. Taken together, our results indicate that ZIKV-induced neuroinflammation, involving nuclear factor erythroid 2-related factor 2 (Nrf2) and nuclear factor κB (NFκB) pathways, affects important aspects of neuron-glia communication. Therefore, although ZIKV infection is transient, long-term consequences might be associated with neurological and/or neurodegenerative diseases.
Identification and quantification of honeybee venom constituents by multiplatform metabolomics
Authors: Klupczynska Agnieszka , Plewa Szymon , Dereziński Paweł , Garrett Timothy J. , Rubio Vanessa Y. , Kokot Zenon J. , Matysiak Jan 
Published: December 2020

AbstractHoneybee (Apis mellifera) venom (HBV) has been a subject of extensive proteomics research; however, scarce information on its metabolite composition can be found in the literature. The aim of the study was to identify and quantify the metabolites present in HBV. To gain the highest metabolite coverage, three different mass spectrometry (MS)-based methodologies were applied. In the first step, untargeted metabolomics was used, which employed high-resolution, accurate-mass Orbitrap MS. It allowed obtaining a broad overview of HBV metabolic components. Then, two targeted metabolomics approaches, which employed triple quadrupole MS, were applied to quantify metabolites in HBV samples. The untargeted metabolomics not only confirmed the presence of amines, amino acids, carbohydrates, and organic acids in HBV, but also provided information on venom components from other metabolite classes (e.g., nucleosides, alcohols, purine and pyrimidine derivatives). The combination of three MS-based metabolomics platforms facilitated the identification of 214 metabolites in HBV samples, among which 138 were quantified. The obtaining of the wide free amino acid profiles of HBV is one of the project’s achievements. Our study contributed significantly to broadening the knowledge about HBV composition and should be continued to obtain the most comprehensive metabolite profile of HBV.
Immunoregulation induced by autologous serum collected after acute exercise in obese men: a randomized cross-over trial
Authors: Dorneles Gilson P. , da Silva Igor M. , Santos Maeli Andressa , Elsner Viviane R. , Fonseca Simone G. , Peres Alessandra , Romão Pedro R. T. 
Published: December 2020

AbstractIn this study, we evaluated the effects of autologous serum collected after two types of exercise on the in vitro inflammatory profile and T cell phenotype of resting peripheral blood mononuclear cells (PBMCs) in obese men. Serum samples and PBMCs were obtained from eight obese men who performed two exercise bouts—high intensity interval exercise (HIIE) and exhaustive exercise session to voluntary fatigue—in a randomized cross-over trial. Pre-exercise PBMCs were incubated with 50% autologous serum (collected before and after each exercise bout) for 4 h. In vitro experiments revealed that post-HIIE serum reduced the histone H4 acetylation status and NF-κB content of PBMCs and suppressed the production of both TNF-α and IL-6 by PBMCs, while increasing IL-10 production. Post-exhaustive exercise serum induced histone H4 hyperacetylation and mitochondrial depolarization in lymphocytes and increased TNF-α production. In vitro post-HIIE serum incubation resulted in an increase in the frequencies of CD4 + CTLA-4 + and CD4 + CD25+ T cells expressing CD39 and CD73. Post-exhaustive exercise serum decreased the frequency of CD4 + CD25 + CD73+ T cells but increased CD4 + CD25-CD39 + T cell frequency. Both post-exercise serums increased the proportions of CD4 + PD-1 + and CD8 + PD-1+ T cells. Blood serum factors released during exercise altered the immune response and T cell phenotype. The type of exercise impacted the immunomodulatory activity of the post-exercise serum on PBMCs.
Predicting Aedes aegypti infestation using landscape and thermal features
Authors: Lorenz Camila , Castro Marcia C. , Trindade Patricia M. P. , Nogueira Maurício L. , de Oliveira Lage Mariana , Quintanilha José A. , Parra Maisa C. , Dibo Margareth R. , Fávaro Eliane A. , Guirado Marluci M. , Chiaravalloti-Neto Francisco 
Published: December 2020

AbstractIdentifying Aedes aegypti breeding hotspots in urban areas is crucial for the design of effective vector control strategies. Remote sensing techniques offer valuable tools for mapping habitat suitability. In this study, we evaluated the association between urban landscape, thermal features, and mosquito infestations. Entomological surveys were conducted between 2016 and 2019 in Vila Toninho, a neighborhood of São José do Rio Preto, São Paulo, Brazil, in which the numbers of adult female Ae. aegypti were recorded monthly and grouped by season for three years. We used data from 2016 to 2018 to build the model and data from summer of 2019 to validate it. WorldView-3 satellite images were used to extract land cover classes, and land surface temperature data were obtained using the Landsat-8 Thermal Infrared Sensor (TIRS). A multilevel negative binomial model was fitted to the data, which showed that the winter season has the greatest influence on decreases in mosquito abundance. Green areas and pavements were negatively associated, and a higher cover of asbestos roofs and exposed soil was positively associated with the presence of adult females. These features are related to socio-economic factors but also provide favorable breeding conditions for mosquitos. The application of remote sensing technologies has significant potential for optimizing vector control strategies, future mosquito suppression, and outbreak prediction.
Evaluating the neuroprotective impact of senolytic drugs on human vision
Authors: El-Nimri Nevin W. , Moore Spencer M. , Zangwill Linda M. , Proudfoot James A. , Weinreb Robert N. , Skowronska-Krawczyk Dorota , Baxter Sally L. 
Published: December 2020

AbstractGlaucoma, a chronic neurodegenerative disease of retinal ganglion cells (RGCs), is a leading cause of irreversible blindness worldwide. Its management currently focuses on lowering intraocular pressure to slow disease progression. However, disease-modifying, neuroprotective treatments for glaucoma remain a major unmet need. Recently, senescent cells have been observed in glaucomatous eyes, exposing a potential pathway for alternative glaucoma therapies. Prior studies demonstrated that targeting senescent RGCs for removal (i.e., a senolytic approach) protected healthy RGCs and preserved visual function in a mouse ocular hypertension model. However, the effects of senolytic drugs on vision in human patients are unknown. Here, we used existing clinical data to conduct a retrospective cohort study in 28 human glaucoma patients who had been exposed to senolytics. Senolytic exposure was not associated with decreased visual acuity, elevated intraocular pressure, or documentation of senolytic-related adverse ocular effects by treating ophthalmologists. Additionally, patients exposed to senolytics (n = 9) did not exhibit faster progression of glaucomatous visual field damage compared to matched glaucoma patients (n = 26) without senolytic exposure. These results suggest that senolytic drugs do not carry significant ocular toxicity and provide further support for additional evaluation of the potential neuroprotective effects of senolytics on glaucoma and other neurodegenerative diseases.
Increased risk of subsequent benign prostatic hyperplasia in non-Helicobacter pylori-infected peptic ulcer patients: a population-based cohort study
Authors: Fang Chu-Wen , Chen Chun-Hao , Shen Kun-Hung , Yang Wen-Chi , Muo Chih-Hsin , Wu Shih-Chi 
Published: December 2020

AbstractThe vagus nerve plays an essential role in homeostasis and inflammation. Clinically, peptic ulcer patients without helicobacter pylori (HP) infection may provide a population for studying the effect of vagal hyperactivity. There were interests in the association of gastrointestinal disease and urogenital disorders. Herein, we try to investigate subsequent risk of benign prostatic hyperplasia (BPH) in non-HP infected peptic ulcer patients. We identified 17,672 peptic ulcer admission male patients newly diagnosed in 1998–2007 from Taiwan Health Insurance Database, and 17,672 male comparison without peptic ulcer, frequency matched by age, and index-year. We assessed subsequent incidence of BPH in each cohort by the end of 2013, and then compared the risk of developing BPH between individuals with and without peptic ulcer. In addition, peptic ulcer patients underwent surgery were also examined. There were 2954 peptic ulcer patients and 2291 comparisons noted with the occurrence of BPH (25.35 and 16.70 per 1000 person-years, respectively). Compared to comparisons, peptic ulcer patients had a 1.45- and 1.26-fold BPH risk in multivariable Cox model and Fine and Gray model (95% CI 1.37–1.54 and 1.19–1.34). In age-stratified analysis, the highest risk of BPH was in 45–59 years (interaction p < 0.05). Regarding surgery types, peptic ulcer patients who underwent simple suture surgery (i.e.: with integrated vagus nerve) had a significant higher BPH risk than comparison (HR 1.50 and 95% CI 1.33–1.74; SHR 1.26 and 95% CI 1.07–1.48), while patients underwent truncal vagotomy/pyloroplasty showed a lower incidence of BPH. In this study, non-HP-infected male peptic ulcer patients were found to have an increased risk of subsequent BPH. Indicating that there might be a role of vagus nerve. Based on the limitations of retrospective nature, further studies are required.
Comparing the effects of a mindfulness versus relaxation intervention on romantic relationship wellbeing
Authors: Karremans Johan C. , Kappen Gesa , Schellekens Melanie , Schoebi Dominik 
Published: December 2020

AbstractThere is increasing scientific interest in the potential association between mindfulness and romantic relationship wellbeing. To date, however, experimental studies using active control groups and testing dyadic effects (i.e. examining both actor and partner effects) are lacking. In the current study, romantically involved individuals engaged for 2 weeks daily in either guided mindfulness exercises, or guided relaxation exercises. Participants, and their partners, completed measures of relationship wellbeing at pre- and post-intervention, and at 1-month follow up. The mindfulness intervention significantly promoted relationship wellbeing, for both participants (i.e. actor effects) and their partners (i.e. partner effects). However, these findings did not significantly differ from changes in relationship wellbeing in the relaxation condition. Theoretical implications of these findings for understanding the association between mindfulness and romantic relationship wellbeing are discussed. Moreover, the findings are discussed in light of recent debates about the relative lack of proper control groups in mindfulness research.