bluuebunny/crossref_metadata_2025_split huggingface dataset:
Molecular evidence of sustained urban malaria transmission in Amazonian Brazil, 2014–2015
Authors: Salla L. C. , Rodrigues P. T. , Corder R. M. , Johansen I. C. , Ladeia-Andrade S. , Ferreira M. U. 
Published: February 2020

Abstract
The relative contribution of imported vs. locally acquired infections to urban malaria burden remains largely unexplored in Latin America, the most urbanised region in the developing world. Here we use a simple molecular epidemiology framework to examine the transmission dynamics of Plasmodium vivax in Mâncio Lima, the Amazonian municipality with the highest malaria incidence rate in Brazil. We prospectively genotyped 177 P. vivax infections diagnosed in urban residents between June 2014 and July 2015 and showed that local parasites are structured into several lineages of closely related microsatellite haplotypes, with the largest genetic cluster comprising 32% of all infections. These findings are very unlikely under the hypothesis of multiple independent imports of parasite strains from the rural surroundings. Instead, the presence of an endemic near-clonal parasite lineage circulating over 13 consecutive months is consistent with a local P. vivax transmission chain in the town, with major implications for malaria elimination efforts in this and similar urban environments across the Amazon.
Predicting the Unpredictable – Harder than Expected
Authors: Eriksson Anneli , Gerdin Wärnberg Martin , Tylleskär Thorkild , von Schreeb Johan 
Published: February 2020

AbstractIntroduction:An earthquake is a hazard that may cause urgent needs requiring international assistance. To ensure rapid funding for such needs-based humanitarian assistance, swift decisions are needed. However, data to guide needs-based funding decisions are often missing in the acute phase, causing delays. Instead, it may be feasible to use data building on existing indexes that capture hazard and vulnerability information to serve as a rapid tool to prioritize funding according to the scale of needs: needs-based funding. However, to date, it is not known to what extent the indicators in the indexes can predict the scale of disaster needs. The aim of this study was to identify predictors for the scale of disaster needs after earthquakes.Methodology:The predictive performance of vulnerability indicators and outcome indicators of four commonly used disaster risk and severity indexes were assessed, both individually and in different combinations, using linear regression. The number of people who reportedly died or who were affected was used as an outcome variable for the scale of needs, using data from the Emergency Events Database (EM-DAT) provided by the Centre for Research on the Epidemiology of Disasters at the Université Catholique de Louvain (CRED; Brussels, Belgium) from 2007 through 2016. Root mean square error (RMSE) was used as the performance measure.Results:The assessed indicators did not predict the scale of needs. This attempt to create a multivariable model that included the indicators with the lowest RMSE did not result in any substantially improved performance.Conclusion:None of the indicators, nor any combination of the indicators, used in the four assessed indexes were able to predict the scale of needs in the assessed earthquakes with any precision.
Quality assessment of systematic reviews and meta-analyses that examine preventive antibiotic uses and management practices designed to prevent disease in livestock
Authors: Vriezen Rachael , Sargeant Jan M. , Vriezen Ellen , Winder Charlotte B. , O'Connor Annette M. 
Published: February 2020

AbstractTo implement effective stewardship in food animal production, it is essential that producers and veterinarians are aware of preventive interventions to reduce illness in livestock. Systematic reviews and meta-analyses (SR/MA) provide transparent, replicable, and quality-assessed overviews. At present, it is unknown how many SR/MA evaluate preventive antibiotic use or management practices aimed at reducing disease risk in animal agriculture. Further, the quality of existing reviews is unknown. Our aim was to identify reviews investigating these topics and to provide an assessment of their quality. Thirty-eight relevant reviews were identified. Quality assessment was based on the AMSTAR 2 framework for the critical appraisal of systematic reviews. The quality of most of the reviews captured was classified as critically low (84.2%,n= 32/38), and only a small percentage of the evaluated reviews did not contain critical weaknesses (7.9%,n= 3/38). Particularly, a small number of reviews reported the development of ana prioriprotocol (15.8%,n= 6/38), and few reviews stated that key review steps were conducted in duplicate (study selection/screening: 26.3%,n= 10/38; data extraction: 15.8%,n= 6/38). The development of high-quality reviews summarizing evidence on approaches to antibiotic reduction is essential, and thus greater adherence to quality conduct guidelines for synthesis research is crucial.
A systematic review and network meta-analysis of injectable antibiotic options for the control of bovine respiratory disease in the first 45 days post arrival at the feedlot
Authors: O'Connor A. M. , Hu D. , Totton S. C. , Scott N. , Winder C. B. , Wang B. , Wang C. , Glanville J. , Wood H. , White B. , Larson R. , Waldner C. , Sargeant J. M. 
Published: February 2020

AbstractWe conducted a systematic review and network meta-analysis to determine the comparative efficacy of antibiotics used to control bovine respiratory disease (BRD) in beef cattle on feedlots. The information sources for the review were: MEDLINE®, MEDLINE In-Process and MEDLINE® Daily, AGRICOLA, Epub Ahead of Print, Cambridge Agricultural and Biological Index, Science Citation Index, Conference Proceedings Citation Index – Science, the Proceedings of the American Association of Bovine Practitioners, World Buiatrics Conference, and the United States Food and Drug Administration Freedom of Information New Animal Drug Applications summaries. The eligible population was weaned beef cattle raised in intensive systems. The interventions of interest were injectable antibiotics used at the time the cattle arrived at the feedlot. The outcome of interest was the diagnosis of BRD within 45 days of arrival at the feedlot. The network meta-analysis included data from 46 studies and 167 study arms identified in the review. The results suggest that macrolides are the most effective antibiotics for the reduction of BRD incidence. Injectable oxytetracycline effectively controlled BRD compared with no antibiotics; however, it was less effective than macrolide treatment. Because oxytetracycline is already commonly used to prevent, control, and treat BRD in groups of feedlot cattle, the use of injectable oxytetracycline for BRD control might have advantages from an antibiotic stewardship perspective.
Beauty from within: Oral administration of a sulfur-containing supplement methylsulfonylmethane improves signs of skin ageing
Authors: Muizzuddin Neelam , Benjamin Rodney 
Published: February 2020

Abstract. Background: Methylsulfonylmethane (MSM) is an organosulfur compound with known benefits for joint health, sports nutrition, immune function, and anti‐aging formulations and is gaining popularity as a nutritional supplement for the support of hair, skin and nails. Methods: The study was conducted in two steps; in Part I (pilot study) a panel of 20 participants ingested either 3 g a day of MSM or placebo capsules for 16 weeks. Visual and subject self assessment of wrinkles and skin texture as the predominant sign of ageing was observed. In Part II (dose-response study), 63 participants ingested either 1 g or 3 g per day of MSM for 16 weeks. Expert clinical grading, instrumental measurements and consumer perception was used to evaluate skin conditions like lines and wrinkles. Additionally, instrumentational analysis was conducted using corneometer and cutometer for investigation of skin hydration, firmness and elasticity. Results: Part I of the study clearly indicates that oral ingestion of MSM (3 g/d) reduces signs of ageing like facial wrinkles ( p < 0.05) and skin roughness ( p < 0.05) as compared to placebo. Detailed analysis in Part II instrumentation assessments showed a significant ( p < 0.05) improvement from baseline in the severity of facial wrinkles, as well as improved skin firmness, elasticity and hydration with MSM. Some of these parameters exhibited a good dose-response indicating that the higher (3 g/d) of the supplement was more effective than the lower dose of 1 g/d, but generally the lower dose of 1 g/d appeared to be sufficiently effective in reducing the facial signs of ageing. Conclusion: This study indicated that MSM is effective in reducing visual signs of skin ageing even at a low dose of 1 g/d.
Chemical Composition of Carbonate Hardground Cements as Reconstructive Tools for Phanerozoic Pore Fluids
Authors: Erhardt Andrea M. , Turchyn Alexandra V. , Dickson J. A. D. , Sadekov Aleksey Y. , Taylor Paul D. , Wilson Mark A. , Scott Peter , Schrag Daniel P. 
Published: February 2020

AbstractIn this study, we report the chemical composition of early carbonate cement precipitates in carbonate hardgrounds to understand the geochemical signature of near‐surface carbonate mineral precipitation. As carbonate hardgrounds lithify at or near the sediment‐water interface, they acquire cements that may be minimally evolved from paleoseawater. Using a suite of chemical measurements, we explore the potential of carbonate hardground cements as paleoenvironmental proxies. Trace metal and isotopic ratios, including some rare earth elements, Mg/Ca, manganese, and strontium concentrations, δ18O, δ13C, and 87Sr/86Sr, were analyzed in the carbonate cements from 17 Phanerozoic carbonate hardgrounds. The sensitivity of the geochemical signal to alteration depends on the geochemical analysis in question and the environmental water‐rock ratio. Of these samples, only our modern sample has measurements consistent with primary precipitation from seawater; all other samples precipitated from chemically evolved seawater or were influenced by meteoric water, even if only minimally changed. The more recent samples from the Cenozoic had seawater 87Sr/86Sr. The Mesozoic samples, in contrast, did not preserve seawater 87Sr/86Sr, even though the Mg/Ca, δ18O, and δ13C values were consistent with precipitation from seawater. Finally, the Paleozoic samples preserved expected seawater 87Sr/86Sr, though rare earth element and δ18O suggest primary precipitation was from evolved seawater. Additionally, we place our results in the context of open versus closed system precipitation using transects of the Mg/Ca ratios across individual cements. Overall, we stress that one geochemical measurement provides only a partial record of fluid composition, but multiple measurements allow a potential understanding of the seawater geochemical signal.
AGU Centennial Grand Challenge: Volcanoes and Deep Carbon Global CO2 Emissions From Subaerial Volcanism—Recent Progress and Future Challenges
Authors: Fischer Tobias P. , Aiuppa Alessandro 
Published: February 2020

AbstractQuantifying the global volcanic CO2 output from subaerial volcanism is key for a better understanding of rates and mechanisms of carbon cycling in and out of our planet and their consequences for the long‐term evolution of Earth's climate over geological timescales. Although having been the focus of intense research since the early 1990s, and in spite of recent progress, the global volcanic CO2 output remains inaccurately known. Here we review past developments and recent progress and examine limits and caveats of our current understanding and challenges for future research. We show that CO2 flux measurements are today only available for ~100 volcanoes (cumulative measured flux, 44 Tg CO2/year), implying that extrapolation is required to account for the emissions of the several hundred degassing volcanoes worldwide. Recent extrapolation attempts converge to indicate that persistent degassing through active crater fumaroles and plumes releases ~53–88 Tg CO2/year, about half of which is released from the 125 most actively degassing subaerial volcanoes (36.4 ± 2.4 Tg CO2/year from strong volcanic gas emitters, Svge). The global CO2 output sustained by diffuse degassing via soils, volcanic lakes, and volcanic aquifers is even less well characterized but could be as high as 83 to 93 Tg CO2/year, rivaling that from the far more manifest crater emissions. Extrapolating these current fluxes to the past geological history of the planet is challenging and will require a new generation of models linking subduction parameters to magma and volatile (CO2) fluxes.
Six‐Axis Ground Motion Measurements of Caldera Collapse at Kīlauea Volcano, Hawai'i—More Data, More Puzzles?
Authors: Wassermann J. , Bernauer F. , Shiro B. , Johanson I. , Guattari F. , Igel H. 
Published: February 2020

AbstractNear‐field recordings of large earthquakes and volcano‐induced events using traditional seismological instrumentation often suffer from unaccounted effects of local tilt and saturation of signals. Recent hardware advances have led to the development of the blueSeis‐3A, a very broadband, highly sensitive rotational motion sensor. We installed this sensor in close proximity to permanently deployed classical instrumentation (i.e., translational seismometer, accelerometer, and tiltmeter) at the Hawaiian Volcano Observatory (USGS). There, we were able to record three ~Mw 5 earthquakes associated with large collapse events during the later phase of the 2018 Kīlauea summit eruption. Located less than 2 km from the origins of these sources, the combined six‐axis translational and rotational measurements revealed clear static rotations around all three coordinate axes. With these six component recordings, we have been able to reconstruct the complete time history of ground motion of a fixed point during an earthquake for the first time.
High‐Accuracy Near‐Infrared Carbon Dioxide Intensity Measurements to Support Remote Sensing
Authors: Long D. A. , Reed Z. D. , Fleisher A. J. , Mendonca J. , Roche S. , Hodges J. T. 
Published: February 2020

AbstractTwo cavity ring‐down spectrometers were employed to accurately measure line intensities in a series of near‐infrared carbon dioxide bands including (30012) ← (00001), (30013) ← (00001), and (30014) ← (00001) near 1.6 μm. Relative combined standard uncertainties for these band intensities were less than 0.1% and showed significant, percent‐level deviations with respect to many existing spectroscopic databases (although close agreement was observed with the HITRAN 2016 database in the (30013) ← (00001) and (30014) ← (00001) bands). Further, the resulting line intensities were utilized in Total Carbon Column Observing Network retrievals and led to significantly reduced biases in the (30012) ← (00001) and (30013) ← (00001) bands. These results indicate that refinements of spectroscopic databases are required to meet the accuracy targets of both ground‐ and satellite‐based remote sensing missions.
Observing U.S. Regional Variability in Lightning NO2 Production Rates
Authors: Lapierre Jeff L. , Laughner Joshua L. , Geddes Jeffrey A. , Koshak William J. , Cohen Ronald C. , Pusede Sally E. 
Published: February 2020

AbstractLightning is a large and variable source of nitrogen oxides (NOx ≡ NO + NO2) to the upper troposphere. Precise estimates of lightning NOx (LNOx) production rates are needed to constrain tropospheric oxidation chemistry; however, controls over LNOx variability are poorly understood. Here, we describe an observational analysis of variability in LNO2 with lightning type by exploiting U.S. regional differences in lightning characteristics in the Southeast, South Central, and North Central United States. We use satellite NO2 measurements from the Ozone Monitoring Instrument with Berkeley High Resolution vertical column densities, a combined lightning data set derived from the Earth Networks Total Lightning Network and National Lightning Detection NetworkTM measurements, and hourly winds from the European Centre for Medium‐Range Weather Forecasts climate reanalysis data set (ERA5) over May–August 2014–2015. We find evidence that cloud‐to‐ground (CG) strokes produce a factor of 9–11 more NO2 than intracloud (IC) strokes for storms with stroke rates of at least 2,800 strokes·cell−1·hr−1. We show that regional differences in LNO2 production rates are generally consistent with regional patterns CG and IC stroke frequency and stroke current density. A comparison of stroke‐based and flash‐based CG/IC LNO2 estimates suggests that CG LNO2 is potentially underestimated when derived with flash data due to the operational definition of CG lightning. We find that differences in peak current explain a large portion of CG/IC LNO2 variability, but that other factors must also be important, including minimum stroke rate. Because IC and CG strokes produce NOx in distinct areas of the atmosphere, we test the sensitivity of our results against the atmospheric NO2 vertical distribution assumed in the a priori profiles; we show that the relative CG to IC LNO2 was generally insensitive to the assumed NO2 vertical distribution.
Environmental Controls on Tropical Sea Breeze Convection and Resulting Aerosol Redistribution
Authors: Park J. M. , van den Heever S. C. , Igel A. L. , Grant L. D. , Johnson J. S. , Saleeby S. M. , Miller S. D. , Reid J. S. 
Published: February 2020

AbstractSea breeze fronts propagate inland from the coastline, driving convective initiation and aerosol redistribution. Forecasting sea breezes is challenging due to uncertainties in the initial conditions, as well as the covariance and interaction of various meteorological and surface parameters. Using the Regional Atmospheric Modeling System coupled to an interactive land‐surface model, we conduct an ensemble of 130 idealized cloud‐resolving simulations by simultaneously perturbing six atmospheric and four surface parameters describing the initial conditions. To identify the key parameters impacting the inland characteristics and the intensity of the sea breeze convection in a tropical rainforest, we apply statistical emulation and variance‐based sensitivity analysis techniques. This study extends a previous study which explored the impacts of various parameters on sea breeze characteristics in arid environments devoid of moist convection. Wind speed is identified as the main contributor to the inland extent, similar to the arid environment study. However, the relative impacts of surface properties on the inland extent are less significant in the moist environment where land‐surface heating can be suppressed via moist convective processes and vegetation‐atmosphere interactions. Two sea breeze‐initiated convection regimes are also identified: shallow and deep. Over the shallow regime, where convective available potential energy is limited, the inversion layer strength is the primary control of the convective intensity. Over the deep regime, boundary layer temperature exerts a robust control over the convective available potential energy and hence the convective intensity. The potential vertical redistribution of aerosols is closely related to the convective intensity.
A New Detailed Plasma‐Chemistry Model for the Potential Impact of Blue Jet Streamers on Atmospheric Chemistry
Authors: Xu C. , Huret N. , Garnung M. , Celestin S. 
Published: February 2020

AbstractA detailed ion‐neutral chemistry model named MiPO‐Streamer model has been developed to simulate the impact of blue jet streamers on stratospheric chemistry. It is based on the MiPLaSMO model (Microphysical and Photochemical Lagrangian Stratospheric Model of Ozone) widely used over the last 20 years to interpret balloon and satellite measurements associated with stratospheric ozone. In this study, instead of using a reduced electric field with constant value during blue jet streamer discharge process, we used a time‐dependent reduced electric field coming from an explicit streamer model. The simulations are performed on daytime/nighttime and in 2‐day long‐term duration at 27 km where the catalytic cycle of NOx is the most efficient to destroy ozone. Among 117 species considered, we put the focus on nitrogen, oxygen, chlorine, and bromine species, and ozone perturbation. The model results indicate that the densities of neutral species through an electrodynamic streamer simulation show an impact of a factor 2 as compared to the pulse‐based simulation at 27 km.
Seasonal Controls of CO2 and CH4 Dynamics in a Temporarily Flooded Subtropical Wetland
Authors: Gomez‐Casanovas Nuria , DeLucia Nicholas J. , DeLucia Evan H. , Blanc‐Betes Elena , Boughton Elizabeth H. , Sparks Jed , Bernacchi Carl J. 
Published: February 2020

AbstractSubtropical and tropical wetlands play a prominent role in the global carbon (C) cycle; yet factors that influence their C fluxes remain uncertain. We collected measurements from a temporarily flooded subtropical wetland over 3 years to investigate environmental drivers impacting CO2 and CH4 fluxes. The wetland was a sink of CO2 (−469 to −380 g C‐CO2 · m−2 · year−1) and a source of CH4 (25.1 to 32.1 g C‐CH4 · m−2 · year−1) to the atmosphere. Dry season CH4 emissions represented 41 to 49% of the annual budget, reflecting the importance of continuous CH4 flux measurements. Gross primary productivity (GPP) increased with temperature and radiation, and the influence of VPD on GPP varied with soil inundation. Higher water tables decreased Reco and increased GPP, and a higher GPP in turn lead to enhanced Reco likely through enhancements of GPP on autotrophic respiration. This suggests that the impact of the water table on Reco depends on the cancelling effects of hydrology and GPP. Emissions of CH4 increased with soil temperature, water table, and GPP until soils were inundated at which point temperature and GPP became the main drivers. Water table and temperature influenced GPP and CH4 fluxes, and increases in GPP directly enhanced CH4 emissions. In addition to impacting C fluxes directly through water table depth, hydrology also determined the hierarchy of the dominance of factors controlling C fluxes and their response. The positive climate forcing of subtropical wetlands may be dictated by plant‐mediated and climate interactions, with hydrological factors playing a major role in determining the greenhouse gas sink or source strength of subtropical wetlands.
Production of Ancient Dissolved Organic Carbon in Arctic Ocean Sediment: A Pathway of Carbon Cycling in the Extreme Environment
Authors: Fu Wenjing , Qi Yuanzhi , Liu Yanguang , Wang Xuchen , Druffel Ellen M. , Xu Xiaomei , Ren Peng , Sun Shuwen , Fan Di 
Published: February 2020

AbstractWe report quantitative carbon isotope evidence showing that porewater dissolved organic carbon (DOC) is produced from different sources in Arctic Ocean sediments, resulting in dramatic changes in both δ13C and Δ14C values of DOC. The very low δ13C (−42.7‰) and Δ14C (−947‰) values measured for porewater DOC indicate that bacteria consume methane hydrate‐derived OC and convert a significant fraction of this δ13C depleted and old OC (44–97%) into DOC in the sediments of the Arctic Ocean. We suggest that the production of extremely old, methane‐derived porewater DOC (5,430–23,600 years) in Arctic Ocean sediment is an important pathway for carbon cycling that provides not only a necessary energy source for microbial communities in this extreme environment but also an ancient DOC source that could flux and contribute to the old and biologically recalcitrant DOC found in the deep ocean.