bluuebunny/crossref_metadata_2025_split huggingface dataset:
Androgen regulation of murine beta-glucuronidase expression: identification and characterization of a nonresponse variant.
Authors: Lund S D , Miller D , Chapman V , Ganschow R E 
Published: January 2021

Abstract
One of the major features of beta-glucuronidase (GUS) expression in inbred strains of the house mouse, Mus musculus, is the responsiveness of this enzyme to androgen stimulation in tubule cells of the kidney. Both GUS-specific and nonspecific mutations have been described which define genes that serve to control this response. During examination of the expression of GUS in the interbreeding subspecies, Mus hortulanus, a new GUS haplotype was uncovered that is characterized, in part, by a lack of GUS response to androgen stimulation in an apparently responsive kidney. Blot hybridization analyses of kidney RNA with a radiolabeled murine GUS cDNA shows this lack of response to be reflected in GUS mRNA levels. The difference in heat stability of GUS activity between M. hortulanus and a responsive inbred strain, ICR/Ha, was utilized to assess the contribution of each parent to kidney levels of GUS in androgen-treated and -untreated F1 progeny of these strains. The results, together with preliminary genetic studies, suggest that the element controlling this responsiveness (or the lack thereof) is cis-active and tightly linked to the GUS structural gene on chromosome 5. It is not known whether this element is identical to another GUS-specific, cis-active element, Gus-r, which also controls the androgen response of GUS in mouse kidney.
Cycloheximide-resistant temperature-sensitive lethal mutations of Saccharomyces cerevisiae.
Authors: McCusker J H , Haber J E 
Published: January 2021

Abstract
We describe the isolation and preliminary characterization of a set of pleiotropic mutations resistant to the minimum inhibitory concentration of cycloheximide and screened for ts (temperature-sensitive) growth. These mutations fall into 22 complementation groups of cycloheximide resistant ts lethal mutations (crl). None of the crl mutations appears to be allelic with previously isolated mutations. Fifteen of the CRL loci have been mapped. At the nonpermissive temperature (37 degrees), these mutants arrest late in the cell cycle after several cell divisions. Half of these mutants are also unable to grow at very low temperatures (5 degrees). Although mutants from all of the 22 complementation groups exhibit similar temperature-sensitive phenotypes, an extragenic suppressor of the ts lethality of crl3 does not relieve the ts lethality of most other crl mutants. A second suppressor mutation allows crl10, crl12, and crl14 to grow at 37 degrees but does not suppress the ts lethality of the remaining crl mutants. We also describe two new methods for the enrichment of auxotrophic mutations from a wild-type yeast strain.
Reciprocal exchanges instigated by large heterologies in the b2 gene of ascobolus are not associated with long adjacent hybrid DNA stretches.
Authors: Langin T , Hamza H , Haedens V , Rossignol J L 
Published: January 2021

Abstract
In the gene b2 of Ascobolus immersus, large heterologies increase the frequencies of reciprocal exchanges on their upstream border (corresponding to the high non-Mendelian segregation side). Tests were made to determine whether these reciprocal exchanges, instigated by large heterologies, resulted from the blockage of a Holliday junction bordering a hybrid DNA tract extending from the end of the gene to the heterology. Three types of experiments were performed to answer this question. In all cases, results did not correlate the presence of reciprocal exchanges instigated by large heterologies with the presence of adjacent hybrid DNA tracts. These reciprocal exchanges were rarely associated with postmeiotic segregation at upstream markers, they were not associated with gene conversion of a marker within the interval and their frequency was not decreased by decreasing the frequency of hybrid DNA formation in the gene. These results led to the proposal of the existence of a precursor to reciprocal exchange different from a single branch-migrating Holliday junction. This precursor migrates rightward and its migration is dependent on the DNA sequence homology. The existence of this precursor does not exclude that reciprocal exchanges resulting from the maturation of single Holliday junctions bordering adjacent hybrid DNA tracts could also occur.
The Ade6-M26 Mutation of Schizosaccharomyces Pombe Increases the Frequency of Crossing over.
Authors: Schuchert P , Kohli J 
Published: January 2021

Abstract
The ade6-M26 mutation of Schizosaccharomyces pombe increases conversion frequency in comparison with the nearby mutation ade6-M375. In order to investigate the effect of ade6-M26 on crossover frequency, heteroallelic ade6 duplications were constructed by integration of plasmids carrying the marker gene ura4. One ade6 gene carries either of the mutations M26 or M375 while the other ade6 copy carries the L469 mutation in both duplications. The duplication with ade6-M26 yields Ade(+) recombinants at significantly higher frequencies in meiosis, but not in mitosis. Tetrad analysis and physical characterization of spore clones from recombination tetrads demonstrate that conversions, unequal crossovers and intrachromatid exchanges occur at higher frequencies but with unaltered proportions among them. The conversion events show a pronounced bias when M26 is involved: they take place preferentially at the M26 allele. Thus the ade6-M26 mutation not only enhances conversion frequency as demonstrated before, but also crossover frequency. It displays the properties expected for a preferred site of initiation of general meiotic recombination. The duplications also yielded new information on ectopic recombination in S. pombe: ectopic crossovers occur in the duplications at much higher frequency than among naturally dispersed homologous sequences.
Characterization of new Punch mutations: identification of two additional mutant classes.
Authors: Reynolds E R , O'Donnell J M 
Published: January 2021

Abstract
The Punch locus of Drosophila melanogaster which encodes the pteridine biosynthetic enzyme, GTP cyclohydrolase, is genetically complex. Lethal alleles of the locus resolve into an array of interallelic complementation groups, and at least one class of mutations is developmentally specific, affecting GTP cyclohydrolase activity only in the heads of adults. All previously isolated Punch alleles were identified on the basis of a mutant eye color phenotype. By screening mutagenized chromosomes over Punch region deficiencies, we have now isolated new alleles on the basis of lethal and visible phenotypes. Most of these alleles fall into previously identified genetic classes, but two new classes of mutations were also found. One class contains two alleles that behave as dominant lethal mutations in some genetic backgrounds. The other class represents a second developmentally specific set of alleles that affect the function of the Punch locus only during embryogenesis.
Chromosomal location of the regulator of mouse alpha-fetoprotein, Afr-1.
Authors: Blankenhorn E P , Duncan R , Huppi K , Potter M 
Published: January 2021

Abstract
Afr-1 is a gene whose product contributes to the adult regulation of mouse alpha-fetoprotein (AFP). In Afr-1b/b homozygotes, the adult serum levels of AFP are 10- to 20-fold higher than in Afr-1a/a or Afr-1a/b mice. The studies reported here were performed to map the Afr-1 gene. Our results show that Afr-1 resides on mouse chromosome 15, approximately 25 cM from Gdc-1. Afr-1 appears to be located in close proximity to the mouse c-myc oncogene. These results are discussed with respect to the susceptibility or resistance of different BALB/c sublines (which are either Afr-1a or Afr-1b, respectively) to pristane-induced plasmacytomas.
The murine dilute suppressor gene dsu suppresses the coat-color phenotype of three pigment mutations that alter melanocyte morphology, d, ash and ln.
Authors: Moore K J , Swing D A , Rinchik E M , Mucenski M L , Buchberg A M , Copeland N G , Jenkins N A 
Published: January 2021

Abstract
The murine dilute suppressor gene, dsu, was identified because of its ability to suppress the dilute coat color of mice homozygous for the retrovirally induced allele (dv) of the dilute locus (d). dsu is unlinked to the d locus and has recently been shown to be semidominantly inherited. The dilute phenotype of d/d mice is the consequence of abnormal melanocyte morphology. While wild-type melanocytes are dendritic, d/d melanocytes are adendritic. dsu apparently suppresses the dilute phenotype by restoring normal melanocyte morphology. In addition to d, two other loci, ashen (ash) and leaden (ln), have been identified that produce a diluted coat color associated with adendritic melanocytes. Interestingly, d and ash are closely linked on chromosome 9 while dsu and ln are located on chromosome 1. In experiments described here, we present genetic mapping data between ash and d indicating that, despite their identical phenotypes, they are separate genes and are not intragenic complementing alleles of the same locus. We also show that dsu is only loosely linked to ln (approximately 9 cM proximal) and that dsu can suppress, at least partially, the coat color of ln/ln mice and ash/ash mice. The partial suppression of ln and ash coat colors is associated with the partial restoration of normal melanocyte morphology. These studies provide new insights into the mechanism of action of dsu and into the interrelationships between members of a family of pigment genes.
Production and characterization of radiation-sensitive meiotic mutants of Coprinus cinereus.
Authors: Zolan M E , Tremel C J , Pukkila P J 
Published: January 2021

Abstract
We have isolated four gamma-ray-sensitive mutants of the basidiomycete Coprinus cinereus. When homozygous, two of these (rad 3-1 and rad 9-1) produce fruiting bodies with very few viable basidiospores, the products of meiosis in this organism. A less radiation-sensitive allele of RAD 3, rad 3-2, causes no apparent meiotic defect in homozygous strains. Quantitative measurements of oidial survival of rad 3-1; rad 9-1 double mutants compared to the single mutants indicated that rad 3-1 and rad 9-1 mutants are defective in the same DNA repair pathway. In the few viable basidiospores that are produced by these two strains, essentially normal levels of meiotic recombination can be detected. None of the mutants exhibits increased sensitivity to UV radiation. Cytological examination of meiotic chromosomes from mutant and wild-type fruiting bodies showed that rad 3-1 homozygous strains fail to condense and pair homologous chromosomes during prophase I. Although rad 9-1 strains are successful at chromosome pairing, meiosis is usually not completed in these mutants.
Genetic Analysis of the Heterochromatin of Chromosome 3 in Drosophila Melanogaster. II. Vital Loci Identified through Ems Mutagenesis.
Authors: Marchant G E , Holm D G 
Published: January 2021

Abstract
Chromosome 3 of Drosophila melanogaster contains the last major blocks of heterochromatin in this species to be genetically analyzed. Deficiencies of heterochromatin generated through the detachment of compound-3 chromosomes revealed the presence of vital loci in the heterochromatin of chromosome 3, but an extensive complementation analysis with various combinations of lethal and nonlethal detachment products gave no evidence of tandemly repeated vital genes in this region. These findings indicate that the heterochromatin of chromosome 3 is genetically similar to that of chromosome 2. A more thorough genetic analysis of the heterochromatic regions has been carried out using the chemical mutagen ethyl methanesulfonate (EMS). Seventy-five EMS-induced lethals allelic to loci uncovered by detachment-product deficiencies were recovered and tested for complementation. In total, 12 complementation groups were identified, ten in the heterochromatin to the left of the centromere and two to the right. All but two complementation groups in the left heterochromatic block could be identified as separate loci through deficiency mapping. The interallelic complementation observed between some EMS-induced lethals, as well as the recovery of a temperature-sensitive allele for each of the two loci, provided further evidence that single-copy, transcribed vital genes reside in the heterochromatin of chromosome 3. Cytological analysis of three detachment-product deficiencies provided evidence that at least some of the genes uncovered in this study are located in the most distal segments of the heterochromatin in both arms. This study provides a detailed genetic analysis of chromosome 3 heterochromatin and offers further information on the genetic nature and heterogeneity of Drosophila heterochromatin.
Ceramide contributes to pathogenesis and may be targeted for therapy in VCP inclusion body myopathy
Authors: Weiss Lan , Jung Kwang-Mook , Nalbandian Angele , Llewellyn Katrina , Yu Howard , Ta Lac , Chang Isabela , Migliore Marco , Squire Erica , Ahmed Faizy , Piomelli Daniele , Kimonis Virginia 
Published: January 2021

Abstract
Knock-in homozygote VCPR155H/R155H mutant mice are a lethal model of valosin-containing protein (VCP)-associated inclusion body myopathy associated with Paget disease of bone, frontotemporal dementia and amyotrophic lateral sclerosis. Ceramide (d18:1/16:0) levels are elevated in skeletal muscle of the mutant mice, compared to wild-type controls. Moreover, exposure to a lipid-enriched diet reverses lethality, improves myopathy and normalizes ceramide levels in these mutant mice, suggesting that dysfunctions in lipid-derived signaling are critical to disease pathogenesis. Here, we investigated the potential role of ceramide in VCP disease using pharmacological agents that manipulate the ceramide levels in myoblast cultures from VCP mutant mice and VCP patients. Myoblasts from wild-type, VCPR155H/+ and VCPR155H/R155H mice, as well as patient-induced pluripotent stem cells (iPSCs), were treated with an inhibitor of ceramide degradation to increase ceramide via acid ceramidase (ARN082) for proof of principle. Three chemically distinct inhibitors of ceramide biosynthesis via serine palmitoyl-CoA transferase (L-cycloserine, myriocin or ARN14494) were used as a therapeutic strategy to reduce ceramide in myoblasts. Acid ceramidase inhibitor, ARN082, elevated cellular ceramide levels and concomitantly enhanced pathology. Conversely, inhibitors of ceramide biosynthesis L-cycloserine, myriocin and ARN14494 reduced ceramide production. The results point to ceramide-mediated signaling as a key contributor to pathogenesis in VCP disease and suggest that manipulating this pathway by blocking ceramide biosynthesis might exert beneficial effects in patients with this condition. The ceramide pathway appears to be critical in VCP pathogenesis, and small-molecule inhibitors of ceramide biosynthesis might provide therapeutic benefits in VCP and related neurodegenerative diseases.
Glutathione S-transferase Pi (Gstp) proteins regulate neuritogenesis in the developing cerebral cortex
Authors: Liu Xiaonan , Blazejewski Sara M , Bennison Sarah A , Toyo-oka Kazuhito 
Published: January 2021

Abstract
GSTP proteins are metabolic enzymes involved in the removal of oxidative stress and intracellular signaling and also have inhibitory effects on JNK activity. However, the functions of Gstp proteins in the developing brain are unknown. In mice, there are three Gstp proteins, Gstp1, 2 and 3, whereas there is only one GSTP in humans. By reverse transcription-polymerase chain reaction (RT-PCR) analysis, we found that Gstp1 was expressed beginning at E15.5 in the cortex, but Gstp2 and 3 started expressing at E18.5. Gstp 1 and 2 knockdown (KD) caused decreased neurite number in cortical neurons, implicating them in neurite initiation. Using in utero electroporation (IUE) to knock down Gstp1 and 2 in layer 2/3 pyramidal neurons in vivo, we found abnormal swelling of the apical dendrite at P3 and reduced neurite number at P15. Using time-lapse live imaging, we found that the apical dendrite orientation was skewed compared with the control. We explored the molecular mechanism and found that JNK inhibition rescued reduced neurite number caused by Gstp knockdown, indicating that Gstp regulates neurite formation through JNK signaling. Thus, we found novel functions of Gstp proteins in neurite initiation during cortical development. These findings not only provide novel functions of Gstp proteins in neuritogenesis during cortical development but also help us to understand the complexity of neurite formation.
Biogeographical patterns of meso- and bathypelagic fish along a Northeastern Atlantic transect
Authors: García-Seoane Eva , Wienerroither Rupert , Mork Kjell Arne , Underwood Melanie J , Melle Webjørn 
Published: January 2021

Abstract
The influence of oceanographic variables on assemblages of meso- and bathypelagic fish was investigated along a Northeastern Atlantic Ocean transect (Cape Verde to the Bay of Biscay) during May 2019. Fish were collected using a macrozooplankton trawl during daylight hours at ten stations. Along the transect, 17 hydrographic stations were also performed with a CTD (Conductivity, Temperature, and Depth). A total of 130 fish taxa were identified. The dominant family was Gonostomatidae, with four species (Cyclothone braueri, Cyclothone microdon, Cyclothone pseudopallida, and Cyclothone pallida) being responsible of more than 78% of the total density. The most frequent species that appeared to be ubiquitous were C. braueri and C. pseudopallida, while Myctophidae was the most diverse family. Multivariate analyses revealed two clusters related with the latitudinal gradient. The fish community in the southern stations (25–37°N) was more diverse than in the northern stations (42–48°N). Temperature from 300 to 700 m depth explained 65% of variation in terms of density and 58% in terms of biomass, both statistically significant. The investigated variation in the deep-pelagic ecosystems on a large spatial scale gives essential information to ecosystem management approaches and marine spatial planning.
Sovereignty’s rationale: Afterword to the Foreword by Neil Walker
Authors: Duke George 
Published: January 2021

Abstract
In this response to Neil Walker’s rich and insightful Foreword essay “The Sovereignty Surplus,” I examine some of the motivational and practical reasons which explain the persistence of the sovereign state form. An insufficient attentiveness to these reasons, I argue, leads Walker to attribute an exaggerated causal significance to his “five Rs” or phenomena of surplus and accrual.
On the algebraic structure of the Moore–Penrose inverse of a polynomial matrix
Authors: Kafetzis Ioannis S , Karampetakis Nicholas P 
Published: January 2021

AbstractThis work establishes the connection between the finite and infinite algebraic structure of singular polynomial matrices and their Moore–Penrose (MP) inverse. The uniqueness of the MP inverse leads to the assumption that such a relation must exist. It is proved that the MP inverse of a singular polynomial matrix has no finite zeros and its finite poles are fully determined. Furthermore, the existence of a correspondence between the infinite pole/zero structure of any singular polynomial matrix and its MP inverse is proved to exist. Finally, it is shown that the minimal indices of the two aforementioned matrices are connected as well.
Equivalence of local- and global-best approximations, a simple stable local commuting projector, and optimal hp approximation estimates in
H
(div)
Authors: Ern Alexandre , Gudi Thirupathi , Smears Iain , Vohralík Martin 
Published: January 2021

Abstract
Given an arbitrary function in $\boldsymbol{H}({\operatorname{div}})$, we show that the error attained by the global-best approximation by $\boldsymbol{H}({\operatorname{div}})$-conforming piecewise polynomial Raviart–Thomas–Nédélec elements under additional constraints on the divergence and normal flux on the boundary is, up to a generic constant, equivalent to the sum of independent local-best approximation errors over individual mesh elements, without constraints on the divergence or normal fluxes. The generic constant only depends on the shape-regularity of the underlying simplicial mesh, the space dimension, and the polynomial degree of the approximations. The analysis also gives rise to a stable, local, commuting projector in $\boldsymbol{H}({\operatorname{div}})$, delivering an approximation error that is equivalent to the local-best approximation. We next present a variant of the equivalence result, where robustness of the constant with respect to the polynomial degree is attained for unbalanced approximations. These two results together further enable us to derive rates of convergence of global-best approximations that are fully optimal in both the mesh size $h$ and the polynomial degree $p$, for vector fields that only feature elementwise the minimal necessary Sobolev regularity. We finally show how to apply our findings to derive optimal a priori$hp$-error estimates for mixed and least-squares finite element methods applied to a model diffusion problem.
Patient-reported outcome measures in mental health clinical research: a descriptive review in comparison with clinician-rated outcome measures
Authors: Baandrup Lone , Rasmussen Jesper Østrup , Mainz Jan , Videbech Poul , Kristensen Solvejg 
Published: January 2021

Abstract

Purpose
To review how patient-reported outcome (PRO) measures in mental health clinical research complement traditional clinician-rated outcome (CRO) measures.

Data sources
Medline, Embase, PsycInfo and Scopus.

Study selection
Latest update of the literature search was conducted in August 2019, using a specified set of search terms to identify controlled and uncontrolled studies (published since 1996) of pharmacological or non-pharmacological interventions in adults (≥18 years) in hospital-based mental health care.

Data extraction
Two authors extracted data independently using a pre-designed extraction form.

Results of data synthesis
Among the 2962 publications identified, 257 were assessed by full text reading. A total of 24 studies reported in 26 publications were included in this descriptive review. We identified subjective and objective outcome measures, classified these according to the pharmacopsychometric triangle and compared them qualitatively in terms of incremental information added to the clinical study question. The data reviewed here from primarily depression and schizophrenia intervention studies show that results from PRO measures and CRO measures generally point in the same direction. There was a relative lack of PRO measures on functioning and medication side effects compared with PRO measures on symptom burden and health-related quality of life.

Conclusion
PROs and CROs supplement each other and at most times support identical study conclusions. Future studies would benefit from a more systematic approach toward use of PROs and a clearer rationale of how to weigh and report the results in comparison with CROs.