bluuebunny/crossref_metadata_2025_split huggingface dataset:
Enteric parasitic infection disturbs bacterial structure in Mexican children with autoantibodies for type 1 diabetes and/or celiac disease
Authors: Calderón de la Barca Ana M. , Castillo-Fimbres Reyna S. , Mejía-León María Esther , Quihui-Cota Luis , Ochoa-Leyva Adrián , Aguayo-Patrón Sandra V. 
Published: August 2020

Abstract
Background
Intestinal bacterial dysbiosis and increased gut permeability are associated with higher risk of developing type 1 diabetes (T1D) or celiac disease (CD). There is a lack of information on parasitism involved in gut disturbance of predisposed children. We evaluated the effect of enteropathogenic parasites (Cryptosporidium spp., Cyclospora spp. G. lamblia, and Blastocystis spp.) on the bacterial structure of feces from children with autoantibodies for T1D or CD. Participants included 37 children under 18 years of age, from whom stools were analyzed for enteric parasites by qPCR and 22/37 for bacterial profile by sequencing the V3–V4 region of the 16s rRNA gene. Dietary, clinical, and socioeconomic data was recorded.

Results
Pathogens parasitized 28/37 participants, Cryptosporidium spp. was the most prevalent (62.2%), followed by both Cyclospora cayetanensis and Blastocystis spp (37.8%). There were no dietary differences (p > 0.05) attributable to parasitism. Co-infected participants with Cryptosporidium and Cyclospora did not differ (p = 0.064) from non-infected participants in bacterial alpha phylogenetic diversity. The same parasites’ co-infection was associated with a decreased abundance of the Ruminococaceae (p = 0.04) and Verrucomicrobioceae families, of the Akkermansia genus (p = 0.009). There was a lower Firmicutes/Bacteroidetes ratio (p = 0.02) in infected than in uninfected participants.

Conclusions
Cryptosporidium and Cyclospora affected the bacterial structure at family and genus levels, decreasing the ratio between Firmicutes and Bacteroidetes in children with auto-antibodies for T1D or CD, which could increase the risk of illness onset.
Indigenous perspectives on wellness and health in Canada: study protocol for a scoping review
Authors: Thiessen K. , Haworth-Brockman M. , Stout R. , Moffitt P. , Gelowitz J. , Schneider J. , Demczuk L. 
Published: August 2020

AbstractBackgroundIndigenous communities are often portrayed from a deficit-based lens; however, Indigenous communities have self-determined perspectives of health and well-being that are strength based. The objective of this study will be to systematically map the literature on perspectives, concepts, and constructs of wellness and well-being in Indigenous communities in Canada.MethodsA scoping review protocol was designed following the Arksey and O’Malley framework. We will search the following electronic databases (from inception onwards): MEDLINE, EMBASE, Web of Science, CINAHL, Academic Search Complete, Anthropology Plus, Bibliography of Native North Americans, Canadian Business and Current Affairs, and Circumpolar Health Bibliographic Database. Grey literature will be identified through searching dissertation databases, Google Scholar, and conference abstracts. We will include all types of literature in English, published and unpublished, including any study design, reviews and meta-analyses, dissertations, reports, and books. The literature considered should describe or reflect Indigenous perspectives that identify concepts or constructs related to well-being or wellness; literature can be from any setting in Canada. Two reviewers will independently screen all citations, full-text reports, and abstract data. Data analysis will involve quantitative descriptions (e.g. frequencies) and qualitative content analysis methods.DiscussionThis review will provide a synthesis of the literature on Indigenous perspectives, concepts, and constructs of wellness and well-being in Canada. We anticipate the study will contribute to improve our understanding of how Indigenous communities conceptualize and embody wellness. Our findings will provide a basis for engaging Indigenous stakeholders in future health research and informing future interpretations of how wellness is conceptualized, whether written or unwritten.
How we teach children with asthma to use their inhaler: a scoping review protocol
Authors: McCrossan Patrick , Mallon Orla , Shields Michael D. , O’Donoghue Dara 
Published: August 2020

Abstract
Background
One reason that asthma remains poorly controlled in children is poor inhaler technique. Current guidelines recommend checking inhaler technique at each clinical visit. However, they do not specify how best to train children to mastery of correct inhaler technique. Currently, many children are simply shown how to use inhalers (brief intervention) which results in less than 50% with correct inhaler technique. The aim of this scoping review is to explore published literature on teaching methods used to train children to master correct inhaler technique.

Methods
This scoping review will follow the Arksey and O’Malley framework and the Joanna Briggs Institute guidelines. We will search (from inception onwards) MEDLINE, Embase, Scopus, Web of Science, CINAHL and the Cochrane library. We will include quantitative studies (e.g. randomised controlled trials, cohort studies and case-control studies), published from the year 1956 to present, on teaching the skill of inhaler technique to children with asthma. Two reviewers will complete all screening and data abstraction independently. Data will be extracted onto a data charting table to create a descriptive summary of the results. Data will then be synthesised with descriptive statistics and visual mapping.

Discussion
This scoping review will provide a broad overview of currently used educational methods to improve inhaler technique in children with asthma. The analysis will allow us to refine future research in this area by focusing on the most effective methods and optimising them.

Systematic review registration
Open Science Framework (osf.io/n7kcw).
Effects of vitamin D supplementation on fasting glucose, dyslipidemia, blood pressure, and abdominal obesity among patients with metabolic syndrome: a protocol for systematic review and meta-analysis of randomized controlled trials
Authors: Aquino Séphora Louyse Silva , Cunha Aline Tuane Oliveira , Lima Josivan Gomes , Sena-Evangelista Karine Cavalcanti Maurício , Oliveira Antonio Gouveia , Cobucci Ricardo Ney , Pedrosa Lucia Fatima Campos 
Published: August 2020

AbstractBackgroundVitamin D deficiency can play a role in extraskeletal functions that are involved with a set of risk factors associated with metabolic syndrome (MetS). The purpose of this review is to investigate the impact of vitamin D supplementation on fasting glucose, dyslipidemia, blood pressure, and abdominal obesity among patients with MetS.MethodsEMBASE, Medline, Web of Science, Lilacs, the Cochrane Central Register of Controlled Trials, clinicaltrials.gov databases, and grey literature will be systematically searched for randomized controlled trials (RCTs) of vitamin D supplementation compared with placebo, through December 2020. We will include in the study patients with MetS diagnosed by the criteria set forth by the National Cholesterol Education Program Adult Treatment Panel III or the International Diabetes Federation. The effect of oral vitamin D supplementation on lipid profile improvement (triglycerides, high-density lipoprotein cholesterol—HDL-C) is this review’s primary outcome. The systematic review will be performed following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. The study screening, data extraction, and quality assessment will be fulfilled by two independent reviewers according to the Cochrane Risk of Bias tool (RoB 2.0). The results of the systematic review will be provided according to the type of intervention, characteristics of the target population, the methods of measurement of vitamin D, the calculated vitamin D concentrations, types of biological samples, and types of outcomes. Meta-analyses will be conducted where appropriate. The Cochran’sQtest and theI2-heterogeneity test will be used to assess the presence of heterogeneity and whether the fixed or the random-effects model would be appropriate for combining study results using the inverse variance method or the DerSimonian-Lair method, respectively. Publication bias will be evaluated using funnel plots and Egger’s and Begg’s tests. The strength of the evidence will be assessed according to the Grading of Recommendations Assessment, Development, and Evaluation (GRADE).DiscussionThis systematic review will assess the effects of vitamin D supplementation on fasting glucose and triglyceride levels, waist circumference and mean blood pressure, and HDL-C among individuals with MetS. These findings may assist with decision-making within a clinical setting.Systematic review registrationPROSPERO registration numberCRD42019123212
Multi-methodical study of Early Modern Age archaeological glazed ceramics from Prague
Authors: Kloužková Alexandra , Kohoutková Martina , Kolářová Mária , Blažková Gabriela , Šefců Radka , Dvořáková Pavla , Bajeux Kmoníčková Martina 
Published: August 2020

Abstract
A series of scientific methods (X-ray analyses, optical and electron microscopy, Raman spectroscopy and thermal analyses) was used to research the ceramic bodies and glazes of forty vessels from Renaissance Prague. The set of Early Modern Age archaeological glazed ceramics contained tableware, kitchenware and
technical ceramics. The main aim was to characterise ceramic materials and glazes used over two centuries. Attention was also paid to the identification of defects and corrosion products of the glazes. The research was conducted with an emphasis on the context of the original use of the ceramic artefacts and the environment of the waste pits from which they were excavated. The archaeological finds include three technical ceramic vessels (a rectifier, a bowl and a jar), which together could have formed a distillation apparatus. Since these vessels represent a rare finding, they were subjected to a detailed investigation. Based on the similarity of ceramic bodies and glazes, it was proved that the three technical ceramic vessels were made in the same workshop and were parts of one distillation apparatus. The results of the performed analyses determined that the studied vessels were manufactured from raw materials with a high content of a plastic component and that the raw materials did not change significantly during the period from the 15th to 18th centuries. The firing temperature of most of the vessels did not exceed 1000 °C. It was proved that all the glazes were medium- or high-lead content glazes and were coloured with ionic pigments.
Evaluation for type 1 diabetes associated autoantibodies in diabetic and non-diabetic Australian terriers and Samoyeds
Authors: O’Kell Allison L. , Wasserfall Clive H. , Henthorn Paula S. , Atkinson Mark A. , Hess Rebecka S. 
Published: August 2020

AbstractBackgroundEvidence for an autoimmune etiology in canine diabetes is inconsistent and could vary based on breed. Previous studies demonstrated that small percentages of diabetic dogs possess autoantibodies to antigens known to be important in human type 1 diabetes, but most efforts involved analysis of a wide variety of breeds. The objective of this study was to evaluate the presence of glutamic acid decarboxylase 65 (GAD65), insulinoma-associated protein 2 (IA-2), and zinc transporter 8 (ZnT8) autoantibodies in diabetic and non-diabetic Australian Terriers and Samoyeds, two breeds with comparatively high prevalence of diabetes, in the United States.ResultsThere was no significant difference in the proportion of samples considered positive for GAD65 or ZnT8 autoantibodies in either breed evaluated, or for IA-2 autoantibodies in Australian Terriers (p > 0.05). The proportion of IA-2 autoantibody positive samples was significantly higher in diabetic versus non-diabetic Samoyeds (p = 0.003), but substantial overlap was present between diabetic and non-diabetic groups.ConclusionsThe present study does not support GAD65, IA-2, or ZnT8 autoantibodies as markers of autoimmunity in canine diabetes in Samoyeds or Australian Terriers as measured using human antigen sandwich enzyme-linked immunosorbent (ELISA) assays. Future studies using canine specific assays as well as investigation for alternative markers of autoimmunity in these and other canine breeds are warranted.
Application of the voluntary human approach test on commercial pig fattening farms: a meaningful tool?
Authors: Wegner Birte , Spiekermeier Ines , Nienhoff Hendrik , Große-Kleimann Julia , Rohn Karl , Meyer Henning , Plate Heiko , Gerhardy Hubert , Kreienbrock Lothar , Beilage Elisabeth Grosse , Kemper Nicole 
Published: August 2020

AbstractBackgroundA Voluntary Human Approach Test (VHAT) was performed in pig pens, and relationships between environmental conditions and welfare indicators were investigated. Five variables were measured in 1668 pens in 214 fattening pig herds in Germany: time until the first contact (touching) between a pig and the person in the pen (TUFC), time until the observer was surrounded by pigs within a radius of approximately two meters, percentage of pigs relative to group size [%] surrounding the observer after 1 min (PPSO), percentage of pigs relative to group size [%] that completely avoided contact with the observer during the entire test period, and how the pigs contacted the observer (Score 0 [no touching] - 3 [biting]). Furthermore, variables indicative of the pigs’ environment (e.g., feeding system, ventilation system), management (e.g., number of usable drinkers, number of usable manipulatable materials), and welfare (e.g., tail lesions, ear lesions) were documented.ResultsPigs engaging in more forceful means of contact (nibbling, biting) approached the observer faster than those exhibiting more gentle types of contact (touching). A lower TUFC was associated with more manipulatable materials present, a higher number of drinkers, and with the control position of the caretaker located inside the pen. Pigs kept in larger groups showed a lower TUFC than those in smaller groups (P = 0.0191). However, PPSO was lower in pigs kept in smaller groups (1–12 pigs per pen) with more manipulatable materials available. In groups with low PPSOs, more tail lesions were observed (P = 0.0296). No relationship between contact type and tail or ear injuries was detected. In younger pigs, PPSO was higher (49.9 ± 23.2%) than for animals in the second half of the fattening period (45.1 ± 19.9%).ConclusionsIn this on-farm study, the relationships between VHAT behavior and environmental factors revealed that external factors (e.g., management practices, housing conditions) impact animals’ responses to this behavioral test. Therefore, using the VHAT as an animal welfare indicator is valid only if these variables are studied as well.
Can mirror reading reverse the flow of time? Evidence from Japanese speakers
Authors: Yang Wenxing , Feng Xueqin , Jin Jing’ai , Liu Yuting , Sun Ying 
Published: August 2020

AbstractAccumulating evidence over the last two decades has established the causal role of a unidirectional orthography in shaping speakers’ mental representations of time. Casasanto and Bottini (Journal of Experimental Psychology: General, 143, 473-479, 2014) extended previous findings by showing that exposure to mirror-reversed orthography of speakers’ native language could completely redirect their mental timelines within minutes. However, the question of whether such a causal effect of writing direction on temporal cognition can be identified in speakers whose native languages adopt bidirectional orthographies remains underexplored in the literature. To address this issue, the present study focused on Japanese which uses bidirectional writing systems, one proceeding horizontally from left to right (HLR) and one vertically from top to bottom (VTB). Two experiments were performed, and the tasks asked participants to process standard/mirror orthography prime questions about time arranged horizontally or vertically, followed by horizontal or vertical arrays of pictorial target stimuli about temporal relations. Results demonstrated that Japanese speakers encoded passage of time into a top-to-bottom linear path commensurate with the VTB writing direction, but they did not align their mental representations of time with the HLR writing orientation. Accordingly, exposure to mirror-reversed bidirectional orthographies redirected Japanese speakers’ vertical but not horizontal space-time mappings. Theoretical implications concerning the causal effects of bidirectional orthographies and the generalizability of the representational flexibility of time maintained by Casasanto and Bottini (Journal of Experimental Psychology: General, 143, 473-479) are discussed.
The impact of gout as described by patients, using the lens of The International Classification of Functioning, Disability and Health (ICF): a qualitative study
Authors: Cairns Isobel , Lindsay Karen , Dalbeth Nicola , Díaz-Torné Cesar , Antònia Pou Maria , Rodríguez Diez Basilio , Pujol-Ribera Enriqueta , Panter Charlotte , Arbuckle Rob , Tatlock Sophi , Taylor William J. 
Published: August 2020

AbstractBackgroundThe International Classification of Functioning, Disability and Health (ICF) aims to comprehensively describe the ways in which a person’s health condition affects their life. This study aimed to contribute to the development of an ICF core set for gout through patient opinion derived from focus groups and interviews.MethodsWe conducted a secondary qualitative analysis of data from three studies investigating the patient experience of gout. In total there were 30 individual interviews and 2 focus groups (N = 17) comprising 47 participants. We conducted thematic analysis of the textual data to extract meaning units, which were then linked to the ICF.ResultsA large number of ICF categories were relevant to patients with gout. Participants mentioned 93 third level categories, 17 of which were mentioned by more than 50% of patients. The most references for a single category was forb280, Sensation of pain, followed bypersonal factors(not yet categorised by the ICF). The most participants mentioned the environmental factore355, Health professional support, followed byb280, Sensation of pain.ConclusionThe categories identified in this study as relevant to patients with gout highlight the severe pain associated with this disease, the impact on mobility and corresponding life areas. The roles of health professional support, medication, and personal attitudes to disease management are also reflected in the data. These results will contribute to the development of the ICF core set for gout.
Eye color prediction using the IrisPlex system: a limited pilot study in the Iraqi population
Authors: Al-Rashedi Nihad A.M , Mandal Amar Mousa , ALObaidi Laith AH 
Published: August 2020

Abstract
Background
Forensic DNA phenotyping has gained momentum in the recent past due to the prediction of externally visible characters (EVCs) from the biological sample. The most common phenotypes like eye, hair, and skin color are predicted from the biological samples using a web-based system called IrisPlex. Based on six genetic SNPs, the IrisPlex system is developed and validated for its prediction accuracy in diverse ethnic groups worldwide. In previous studies, this system proved to have significant prediction accuracy. The EVCs vary substantially based on different geographical locations. Hence, the objective of this study was to validate the accuracy of the IrisPlex system in predicting the eye colors in the Iraqi population.

Methods
Six genetic single-nucleotide polymorphisms SNPs (HERC2-rs12913832, OCA2- rs1800407, SLC24A4-rs12896399, SLC45A2- rs16891982, TYR-rs1393350, and IRF4- rs12203592) in 58 Iraqi subjects were performed using Sequenom MassARRAY Genotyping. According to Liu et al., a predicted probability of 0.7 was considered as the threshold.

Results
Participants in this study of brown color were observed in 44.83%, intermediate in 43.1%, and blue in 12.07%. Completely predictive accuracy is obtained in 1; we observed the AUC at threshold 0.7 was 0.91 for brown, 0.79 for blue, and 0.60 for intermediate eye color. The sensitivity was 42.85% for blue, 0% for intermediate eye color, and 100% for brown-colored eye. Specificity was 100% for blue, 100% for intermediate, and 78.13% for brown eye color.

Conclusion
Hence, it was concluded that the prediction accuracy of the IrisPlex system for blue and brown color eye in the Iraqi population is significant in the studied population size. However, a pivotal study with larger sample size is required to represent the prediction accuracy of the IrisPlex system in the whole Iraqi population.
Biological control of poplar anthracnose caused by Colletotrichum gloeosporioides (Penz.) Penz. & Sacc.
Authors: Huang Huayi , Tian Chengming , Huang Yonghuai , Huang Huanhua 
Published: August 2020

AbstractPoplar anthracnose is one of the most serious diseases caused by the fungal pathogen Colletotrichum gloeosporioides (Penz.) Penz. & Sacc. Biocontrol is an efficient green way for the disease control, and numerous researches have focused on exploring the potential biocontrol bacteria strains against C. gloeosporioides. In this study, antifungal activities against C. gloeosporioides of 108 rhizosphere soil isolates from healthy polar plants were investigated in vitro by the dual culture assay. The results suggested that strain ZSH-1 showed the highest level of antifungal activity, as it inhibited C. gloeosporioides at a distance of 10.00 mm. Based on the morphological, physiological-biochemical characteristics, and phylogeny analysis, strain ZSH-1 was identified as Bacillus subtilis. The sterile culture filtrate, crude protein, and crude lipopeptide extracts from the culture filtrate, and volatile compound(s) of ZSH-1 displayed a strong antagonism towards 7 fungal phytopathogens (C. gloeosporioides, Fusarium oxysporum, Alternaria tenuissima, Cytospora chrysosperma, Botryosphaeria dothidea, Mucor sp., and Absidia sp.), with inhibition rates ranging from 44.0 to 89.1%, 26.7 to 85.4%, 11.6 to 89.7%, and 7.8 to 63.2%, respectively. Moreover, ZSH-1 exhibited cell wall-degrading traits by producing 3 lytic enzymes (cellulose, β-1,3-glucanase, and protease). Finally, the greenhouse studies also revealed that strain ZSH-1 had a 47.6% (12 days) efficacy in controlling poplar anthracnose when compared with the control. In concluding, obtained results demonstrate the potential biocontrol effect of B. subtilis ZSH-1, and it can be used as a promising biocontrol agent against poplar anthracnose and other fungal phytopathogens.