bluuebunny/crossref_metadata_2025_split huggingface dataset:
Caveolin-1 rs4730751 single-nucleotide polymorphism may not influence kidney transplant allograft survival
Authors: Maanaoui Mehdi , Lenain Rémi , Hamroun Aghilès , Van der Hauwaert Cynthia , Lopez Benjamin , Gibier Jean-Baptiste , Frimat Marie , Savary Grégoire , Hennart Benjamin , Larrue Romain , Pottier Nicolas , Broly Franck , Provôt François , Hazzan Marc , Glowacki François , Cauffiez Christelle 
Published: October 2019

AbstractCaveolin-1 is a protein (encoded by the CAV1 gene) supposedly harboring a protective effect against fibrosis. CAV1 rs4730751 single nucleotide polymorphism (SNP) AA genotype was initially associated with lower graft survival compared to non-AA. However, subsequent studies could not find the same effect. CAV1 rs4730751 SNP was investigated on 918 kidney donors. Multivariate Cox-model analyses were performed to evaluate risk factors for graft loss. Longitudinal changes on long-term estimated glomerular filtration rate (eGFRs) were evaluated with a linear mixed model. Histopathological findings from protocolled biopsies after 3 months post transplantation were also analyzed. Donor CAV1 rs4730751 genotyping proportions were 7.1% for AA, 41.6% for AC and 51.3% for CC. The AA genotype, compared to non-AA, was not associated with lower graft survival censored or not for death (multivariate analysis: HR = 1.23 [0.74–2.05] and HR = 1.27 [0.84–1.92]). Linear mixed model on long-term eGFRs revealed also no significant difference according to the genotype, yet we observed a trend. AA genotype was also not associated with a higher degree of fibrosis index on protocolled kidney biopsies at 3 months. To conclude, donor CAV1 rs4730751 SNP may impact on kidney transplantation outcomes, but this study could not confirm this hypothesis.
Photosynthetical activity modelisation of olive trees growing under drought conditions
Authors: Sghaier Abderrahman , Perttunen Jari , Sievaènen Risto , Boujnah Dalenda , Ouessar Mohamed , Ben Ayed Rayda , Naggaz Kamel 
Published: October 2019

AbstractPredicting photosynthetic production in olive trees is a key feature in managing the effect of climate change on arid areas. Functional-structural plant modelling is a promising tool for achieving this goal. We used a photosynthetic sub-model that accounted for water and temperature stress and implemented it into LIGNUM model. We then conducted an experiment to validate the model at the leaf level using olive trees (Olea europaea) grown under various climatic condition. Then, we simulated photosynthetic production of three static olive tree models aged 1, 2, and 3 years. Results revealed a good fit between observed and predicted photosynthesis, with coefficient of determination (R2) values of 0.94 and 0.93 for Chemlali and Zarrazi cultivars, respectively. These results showed that the impact of water stress on photosynthetic production was marginal.
Nanoparticles transported from aquatic to terrestrial ecosystems via emerging aquatic insects compromise subsidy quality
Authors: Bundschuh Mirco , Englert Dominic , Rosenfeldt Ricki R. , Bundschuh Rebecca , Feckler Alexander , Lüderwald Simon , Seitz Frank , Zubrod Jochen P. , Schulz Ralf 
Published: October 2019

AbstractNanoparticle contaminants enter aquatic ecosystems and are transported along the stream network. Here, we demonstrate a novel pathway for the return of nanoparticles from aquatic to terrestrial ecosystems via cross-boundary subsidies. During their emergence, trichopteran caddisflies carried titanium dioxide and gold nanoparticles into their terrestrial life stages. Moreover, their emergence was delayed by ≤30 days, and their energy reserves were depleted by ≤25%. Based on worst case estimates, it is suggested that terrestrial predators, such as bats feeding on aquatic prey, may ingest up to three orders of magnitude higher gold levels than anticipated for humans. Additionally, terrestrial predator species may suffer from alterations in the temporal availability and nutritional quality of their prey. Considering the substantial transfer of insect biomass to terrestrial ecosystems, nanoparticles may decouple aquatic and terrestrial food webs with important (meta-)ecosystem level consequences.
Kinematics of perceived dyadic coordination in dance
Authors: Hartmann Martin , Mavrolampados Anastasios , Allingham Emma , Carlson Emily , Burger Birgitta , Toiviainen Petri 
Published: October 2019

AbstractWe investigated the relationships between perceptions of similarity and interaction in spontaneously dancing dyads, and movement features extracted using novel computational methods. We hypothesized that dancers’ movements would be perceived as more similar when they exhibited spatially and temporally comparable movement patterns, and as more interactive when they spatially oriented more towards each other. Pairs of dancers were asked to move freely to two musical excerpts while their movements were recorded using optical motion capture. Subsequently, in two separate perceptual experiments we presented stick figure animations of the dyads to observers, who rated degree of interaction and similarity between dancers. Mean perceptual ratings were compared with three different approaches for quantifying coordination: torso orientation, temporal coupling, and spatial coupling. Correlations and partial correlations across dyads were computed between each estimate and the perceptual measures. A systematic exploration showed that torso orientation (dancers facing more towards each other) is a strong predictor of perceived interaction even after controlling for other features, whereas temporal and spatial coupling (dancers moving similarly in space and in time) are better predictors for perceived similarity. Further, our results suggest that similarity is a necessary but not sufficient condition for interaction.
Nanoscale structural defects in oblique Ar+ sputtered Si(111) surfaces
Authors: Gupta Divya , Chawla Mahak , Singhal Rahul , Aggarwal Sanjeev 
Published: October 2019

AbstractThe present endeavor investigates the controlled surface modifications and evolution of self-assembled nano-dimensional defects on oblique Ar+ sputtered Si(111) surfaces which are important substrates for surface reconstruction. The defect formation started at off-normal incidences of 50° and then deflates into defined defect zones with decrease in oblique incidence, depending strongly on angle of ion incidence. Interestingly, it is observed that mean size & height decreases while average density of these defects increases with decreasing oblique incidence. Non-linear response of roughness of irradiated Si(111) with respect to oblique incidence is observed. Crystalline (c-Si) to amorphous (a-Si) phase transition under oblique argon ion irradiation has been revealed by Raman spectroscopy. Our analysis, thus, shows that high dose argon ion irradiation generates of self-assembled nano-scale defects and surface vacancies & their possible clustering into extended defect zones. Explicitly, ion beam-stimulated mass transport inside the amorphous layers governs the observed defect evolution. This investigation of crystalline (c-Si) coupled with amorphous (a-Si) phases of nano-structured surfaces provides insight into the potential applications in the nano-electronic and optoelectronic devices thus, initiating a new era for fabricating multitude of novel structures.
Chronic kidney disease exacerbates ischemic limb myopathy in mice via altered mitochondrial energetics
Authors: Berru Fabian N. , Gray Sarah E. , Thome Trace , Kumar Ravi A. , Salyers Zachary R. , Coleman Madeline , Dennis Le  , O’Malley Kerri , Ferreira Leonardo F. , Berceli Scott A. , Scali Salvatore T. , Ryan Terence E. 
Published: October 2019

AbstractChronic kidney disease (CKD) substantially increases the severity of peripheral arterial disease (PAD) symptomology, however, the biological mechanisms remain unclear. The objective herein was to determine the impact of CKD on PAD pathology in mice. C57BL6/J mice were subjected to a diet-induced model of CKD by delivery of adenine for six weeks. CKD was confirmed by measurements of glomerular filtration rate, blood urea nitrogen, and kidney histopathology. Mice with CKD displayed lower muscle force production and greater ischemic lesions in the tibialis anterior muscle (78.1 ± 14.5% vs. 2.5 ± 0.5% in control mice, P < 0.0001, N = 5–10/group) and decreased myofiber size (1661 ± 134 μm2 vs. 2221 ± 100 μm2 in control mice, P < 0.01, N = 5–10/group). This skeletal myopathy occurred despite normal capillary density (516 ± 59 vs. 466 ± 45 capillaries/20x field of view) and limb perfusion. CKD mice displayed a ~50–65% reduction in muscle mitochondrial respiratory capacity in ischemic muscle, whereas control mice had normal mitochondrial function. Hydrogen peroxide emission was modestly higher in the ischemic muscle of CKD mice, which coincided with decreased oxidant buffering. Exposure of cultured myotubes to CKD serum resulted in myotube atrophy and elevated oxidative stress, which were attenuated by mitochondrial-targeted therapies. Taken together, these findings suggest that mitochondrial impairments caused by CKD contribute to the exacerbation of ischemic pathology.
Study of Periodontal Health in Almada-Seixal (SoPHiAS): a cross-sectional study in the Lisbon Metropolitan Area
Authors: Botelho João , Machado Vanessa , Proença Luís , Alves Ricardo , Cavacas Maria Alzira , Amaro Luís , Mendes José João 
Published: October 2019

AbstractThis study aimed to describe the prevalence and extent of periodontal diseases among adults in the southern region of the Lisbon Metropolitan Area. This population-based cross-sectional study included 1,064 randomized participants (aged 18 to 95 years, 617 females/447 males). Sociodemographic, behaviours and medical information were recorded. Periodontal conditions were assessed with a full-mouth circumferential periodontal examination. It was used the American Association of Periodontology/European Federation of Periodontology 2017 case definitions. A logistic regression analysis was applied to ascertain hypothetical risk factors towards periodontitis. The prevalence of periodontitis was 59.9%, with 24.0% and 22.2% of the participants exhibiting severe and moderate periodontitis, respectively. The risk of periodontitis significantly increased with age (OR = 1.05, 95% CI: 1.04–1.06), for active and former smokers (OR = 3.76 and OR = 2.11, respectively), with lower education levels (OR = 2.08, OR = 1.86, for middle and elementary education, respectively) and with diabetes mellitus (OR = 1.53). This study confirms a high burden of periodontitis in the target (Portuguese) sub-population. The findings provide a comprehensive understanding that will empower appropriate national public oral health programmes and population-based preventive actions.
An improved overlap extension PCR for simultaneous multiple sites large fragments insertion, deletion and substitution
Authors: Guo Wei , Xie Binhua , Jiang Min , Zhu Xiao-Jing , Qiu Mengsheng , Dai Zhong-Min 
Published: October 2019

AbstractThe existing molecular cloning methods are often limited by the availability of suitable restriction sites. It is still a challenge for simultaneous cloning of multiple fragments into different sites of a single vector. Here we developed a novel method named improved overlap extension PCR (IOEP) for restriction enzyme independent cloning of large fragments. The addition of primers enables IOEP to exponentially amplify the overlap extension product, thus greatly improves the amplification efficiency of large fragments. Moreover, coupled with the benefit of T4 DNA polymerase to improve cloning efficiency, our method can be used to simultaneously insert, delete and replace multiple DNA fragments at different sites.
Femtosecond Laser Pulse Ablation of Sub-Cellular Drusen-Like Deposits
Authors: Smith Katherine N. , Katchinskiy Nir , Elezzabi Abdulhakem Y. 
Published: October 2019

AbstractAge-related macular degeneration (AMD) is a condition affecting the retina and is the leading cause of vision loss. Dry AMD is caused by the accumulation of lipid deposits called drusen, which form under the retina. This work demonstrates, for the first time, the removal of drusen-like deposits underneath ARPE-19 cell layers using femtosecond laser pulses. A novel cell culture model was created in response to the limited access to primary cell lines and the absence of animal models that recapitulate all aspects of AMD. In the cell culture model, deposits were identified with fluorescent stains specific to known deposit constituents. Trains of sub-10 femtosecond laser pulses from a Ti:Sapphire laser were used to successfully ablate the deposits without causing damage to surrounding cells. This drusen removal method can be used as a potential treatment for dry-stage AMD.
8-OxoG in GC-rich Sp1 binding sites enhances gene transcription in adipose tissue of juvenile mice
Authors: Park Jong Woo , Han Young In , Kim Sung Woo , Kim Tae Min , Yeom Su Cheong , Kang Jaeku , Park Joonghoon 
Published: October 2019

AbstractThe oxidation of guanine to 8-oxoguanine (8-oxoG) is the most common type of oxidative DNA lesion. There is a growing body of evidence indicating that 8-oxoG is not only pre-mutagenic, but also plays an essential role in modulating gene expression along with its cognate repair proteins. In this study, we investigated the relationship between 8-oxoG formed under intrinsic oxidative stress conditions and gene expression in adipose and lung tissues of juvenile mice. We observed that transcriptional activity and the number of active genes were significantly correlated with the distribution of 8-oxoG in gene promoter regions, as determined by reverse-phase liquid chromatography/mass spectrometry (RP-LC/MS), and 8-oxoG and RNA sequencing. Gene regulation by 8-oxoG was not associated with the degree of 8-oxoG formation. Instead, genes with GC-rich transcription factor binding sites in their promoters became more active with increasing 8-oxoG abundance as also demonstrated by specificity protein 1 (Sp1)- and estrogen response element (ERE)-luciferase assays in human embryonic kidney (HEK293T) cells. These results indicate that the occurrence of 8-oxoG in GC-rich Sp1 binding sites is important for gene regulation during adipose tissue development.
Effects of Microwave Energy on Fast Compressive Strength Development of Coal Bottom Ash-Based Geopolymers
Authors: Hong Sungil , Kim Hyo 
Published: October 2019

AbstractMicrowave energy has been shown to be effective for geopolymer synthesis due to its fast and penetrative heating characteristics; however, the changes in the physicochemical properties of the geopolymer, resulting from the microwave irradiation, have not been fully elucidated. Therefore, this study is aimed at investigating the effect of the microwaving on the properties of coal bottom ash(CBA) geopolymers. We prepared geopolymer samples by casting a mixture of ground CBA and 14 M NaOH solution against cubic molds with a hand press machine, followed by pre-curing in a dry oven at 75 °C for 24 h and microwaving under various powers and durations. The compressive strength strongly depended on the moisture content, i.e., the strength increased from 21 to 65 MPa or higher as the moisture content decreased to critical values, after which the strength began to decrease. The results showed that microwave energy stimulated an additional geopolymerization by evaporating the redundant free water. This led to the strength gain, although the over-irradiation generated a high internal stress and poor structural integrity, which resulted in the strength loss. Therefore, the appropriate application of microwave energy is a promising option for synthesizing high-strength geopolymers in a cost- and time-effective manner.
Evaluation of the dose-related concentration approach in therapeutic drug monitoring of diuretics and β-blockers – drug classes with low adherence in antihypertensive therapy
Authors: Ritscher Sabrina , Hoyer Milena , Wunder Cora , Obermüller Nicholas , Toennes Stefan W. 
Published: October 2019

AbstractDetection of antihypertensive drugs in biological samples is an important tool to assess the adherence of hypertensive patients. Urine and serum/plasma screenings based on qualitative results may lead to misinterpretations regarding drugs with a prolonged detectability. The aim of the present study was to develop a method that can be used for therapeutic drug monitoring (TDM) of antihypertensive drugs with focus on adherence assessment. Therefore, a method for quantification of four diuretics and four β-blockers using high-performance liquid chromatography-mass spectrometric analysis (LC-MS/MS) of combined acidic and basic serum extracts was developed and validated. The method was applied to 40 serum samples from 20 patients in a supervised medication setting (trough and peak serum samples). Literature data on therapeutic concentration ranges, as well as dose-related drug concentrations (calculated from data of pharmacokinetic studies) were used to evaluate adherence assessment criteria. Concentrations were measured for bisoprolol (n = 9 patients), metoprolol (n = 7), nebivolol (n = 1), canrenone (n = 2, metabolite of spironolactone), hydrochlorothiazide (n = 10) and torasemide (n = 8). The measured concentrations were within the therapeutic reference ranges, except for 24% of the samples (mainly β-blockers). In contrast, all measured concentrations were above the lower dose-related concentration (DRC), which appears superior in evaluating adherence. In conclusion, the quantitative analysis of antihypertensive drugs in serum samples and its evaluation on the basis of the individually calculated lower DRC is a promising tool to differentially assess adherence. This method could possibly detect a lack of adherence or other causes of insufficient therapy more reliably than qualitative methods.
Caffeoyl-β-d-glucopyranoside and 1,3-dihydroxy-2-tetracosanoylamino-4-(E)-nonadecene isolated from Ranunculus muricatus exhibit antioxidant activity
Authors: Azam Farooq , Chaudhry Bashir Ahmad , Ijaz Hira , Qadir Muhammad Imran 
Published: October 2019

AbstractThis study evaluates the antioxidant activity of Ranunculus muricatus and isolation and structure elucidation of the active constituents. The aerial parts of the plants were shade dried at room temperature and powdered and extracted with methanol. The free radical scavenging activity was evaluated by 1,1-diphenyl-2-picryl-hydrazyl (DPPH) assay. The percentage scavenging activity was determined based on the percentage of DPPH radical scavenged. Column chromatography was used in order to isolate the active compounds. Spectral techniques UV, IR, 1H NMR, 13CNMR and HREI-MS were used for the structure elucidation of the isolated compounds. Two isolated compounds, A (caffeoyl-β-d-glucopyranoside) and B (1,3-dihydroxy-2-tetracosanoylamino-4-(E)-nonadecene), exibited a significant antioxidant activity as showed by DPPH radical scavenging method. Percentage inhibition for compound A (at 0.5 mM) was 82.67 ± 0.19 with IC50 of 93.25 ± 0.12 (μM), and for compound B (at 0.5 mM) was 69.23 ± 0.19 with IC50 of 183.34 ± 0.13 (μM). Quercetin was used as standard control. It was conclued from the present study that caffeoyl-β-d-glucopyranoside and 1,3-dihydroxy-2-tetracosanoylamino-4-(E)-nonadecene isolated from methanol extract of aerial parts of Ranunculus muricatus posses antioxidant activity.
Neoadjuvant therapy versus upfront surgery in resectable pancreatic cancer according to intention-to-treat and per-protocol analysis: A systematic review and meta-analysis
Authors: Lee Yoon Suk , Lee Jong-Chan , Yang Se Yeol , Kim Jaihwan , Hwang Jin-Hyeok 
Published: October 2019

AbstractThe effectiveness of neoadjuvant therapy (NAT) remains unclear in resectable pancreatic cancer (PC) as compared with upfront surgery (US). The aim of this study was to investigate the survival gain of NAT over US in resectable PC. PubMed and EMBASE were searched for studies comparing survival outcomes between NAT and US for resectable PC until June 2018. Overall survival (OS) was analyzed according to treatment strategy (NAT versus US) and analytic methods (intention-to-treat analysis (ITT) and per-protocol analysis (PP)). In 14 studies, 2,699 and 6,992 patients were treated with NAT and US, respectively. Although PP analysis showed the survival gain of NAT (HR 0.72, 95% CI 0.68–0.76), ITT analysis did not show the statistical significance (HR 0.96, 95% CI 0.82–1.12). However, NAT completed with subsequent surgery showed better survival over US completed with adjuvant therapy (HR 0.82, 95% CI 0.71–0.93). In conclusion, the supporting evidence for NAT in resectable PC was insufficient because the benefit was not demonstrated in ITT analysis. However, among the patients who completed both surgery and chemotherapy, NAT showed survival benefit over adjuvant therapy. Therefore, NAT could have a role of triaging the patients for surgery even in resectable PC.
UGCG influences glutamine metabolism of breast cancer cells
Authors: Schömel Nina , Hancock Sarah E. , Gruber Lisa , Olzomer Ellen M. , Byrne Frances L. , Shah Divya , Hoehn Kyle L. , Turner Nigel , Grösch Sabine , Geisslinger Gerd , Wegner Marthe-Susanna 
Published: October 2019

AbstractUDP-glucose ceramide glucosyltransferase (UGCG) is the key enzyme in glycosphingolipid (GSL) metabolism by being the only enzyme that generates glucosylceramide (GlcCer) de novo. Increased UGCG synthesis is associated with pro-cancerous processes such as increased proliferation and multidrug resistance in several cancer types. We investigated the influence of UGCG overexpression on glutamine metabolism in breast cancer cells. We observed adapted glucose and glutamine uptake in a limited energy supply environment following UGCG overexpression. Glutamine is used for reinforced oxidative stress response shown by increased mRNA expression of glutamine metabolizing proteins such as glutathione-disulfide reductase (GSR) resulting in increased reduced glutathione (GSH) level. Augmented glutamine uptake is also used for fueling the tricarboxylic acid (TCA) cycle to maintain the proliferative advantage of UGCG overexpressing cells. Our data reveal a link between GSL and glutamine metabolism in breast cancer cells, which is to our knowledge a novel correlation in the field of sphingolipid research.
Herbal components of Japanese Kampo medicines exert laxative actions in colonic epithelium cells via activation of BK and CFTR channels
Authors: Numata Tomohiro , Sato-Numata Kaori , Okada Yasunobu 
Published: October 2019

AbstractJapanese Kampo medicines Junchoto and Mashiningan are mixtures of numerous herbal plant extracts and empirically known to exert laxative actions by stimulating fluid secretion in the colonic epithelium. However, it is unknown which and how the herbal components of these crude Kampo drugs are effective to stimulate ion effluxes causing fluid secretion. Here, we selected four herbal components of Junchoto and Mashiningan, Mashinin (MSN), Kyonin (KYN), Tonin (TON), and Daio (DIO), which are putatively laxatives, and examined their effects on the ion channel activity of human colonic epithelial Caco-2 cells. Patch clamp analyses revealed that MSN activated whole-cell current characteristics of the cystic fibrosis transmembrane conductance regulator (CFTR) channel, whereas KYN, TON, and DIO activated the large-conductance and voltage-activated K+ (BK) channel. Furthermore, electronic cell sizing showed that MSN induced secretory volume decrease (SVD) sensitivity to a CFTR blocker, whereas TON, KYN, and DIO induced SVD sensitivity to a K+ channel blocker. In conclusion, MSN and TON, KYN, and DIO promote fluid secretion from colonic epithelial cells by activating CFTR and BK channels. Thus, Japanese Kampo medicines, Junchoto and Mashiningan, exert anti-constipation actions by inducing KCl efflux through the combined actions of CFTR- and BK-stimulating herbal components.