bluuebunny/crossref_metadata_2025_split huggingface dataset:
Modifying elastic modulus of two-component polyurethane adhesive for structural hardwood bonding
Authors: Bockel S. , Harling S. , Konnerth J. , Niemz P. , Weiland G. , Hogger E. , Pichelin F. 
Published: September 2020

AbstractSubject to this study is the modification of an experimental two-component polyurethane (2C PUR) as an alternative adhesive for structural hardwood bonding. The 2C PUR has been adapted by calcium carbonate as filler to increase its modulus of elasticity with the aim of increasing the modulus analogue to the ones typically observed for classic amino- and phenol based adhesives. The 2C PUR system was compared with a commercial one-component polyurethane (1C PUR) and a phenol resorcinol formaldehyde (PRF) adhesive. The wetting properties of the adhesives were tested in terms of surface tension, polar and dispersive part and contact angle on European beech wood (Fagus sylvatica L.). In addition, adhesive polymer films of 2C PUR were tested for tensile strength and modulus of elasticity (E-Modulus) following ISO 527-1. The adhesives bond performance on beech wood was determined by lap-joints according to EN 302-1 in various climate conditions. The results show that 2C PUR has proper wettability properties on beech wood. Adding 60% wt filler to the polyol component increased the E-Modulus from 2.3 GPa (0%) to 4.4 GPa. The tensile strength of the modified 2C PUR polymer films was comparable with the industrial 1C PUR. Tensile shear strength and wood failure percentage of 2C PUR lap-joints were increased by adding filler and met requirements in dry and re-dried conditions according to EN 302-1. However, the addition of filler didn’t result in an improvement in wet conditions. The present study shows sufficient performance for bonding hardwood with 2C PUR in dry conditions, while the system still needs to be improvement regarding its performance in humid conditions.
My Migraine Voice survey: disease impact on healthcare resource utilization, personal and working life in Finland
Authors: Sumelahti Marja-Liisa , Sumanen Markku , Sumanen Merika S. , Tuominen Samuli , Vikkula Johanna , Honkala Sanna M. , Rosqvist Stina , Korolainen Minna A. 
Published: September 2020

Abstract
Background
A global My Migraine Voice survey was conducted in 31 countries among 11,266 adults who suffered from ≥4 monthly migraine days (MMD). The aim of this retrospective observational survey-based study was to analyse the country specific results in Finland in order to understand the impact of migraine based on disease severity.

Methods
The included participants (3%, n = 338/11,266) were stratified by mean MMDs into 4 ≤ MMD < 8 (n = 133), 8 ≤ MMD < 15 (n = 139) and MMD ≥ 15 (n = 66) subgroups. Comorbidities, migraine-related emotional burden and impact on daily living and work productivity and activity impairment (WPAI) were assessed. Subgroup analysis on healthcare resource utilization (HCRU) due to migraine was assessed by visits to healthcare practitioners (HCPs) during the past 6 months and by hospitalizations and emergency room (ER) visits during the past 12 months. The group difference was tested using the one-way ANOVA and for categorical variables using the Chi-squared test. The association between HCRU and MMD and number of comorbidities was assessed using negative binomial regression analysis.

Results
Mean age was 44 years, 93% were women and 67% (n = 227) were employed. Chronic migraine (CM, MMD ≥ 15) was reported in 19.5% of the respondents. The negative impact on daily functioning and emotional burden increased significantly by migraine frequency. Mean number of comorbidities was 2.4, and mean number of HCP visits during the previous 6 months was 5.9. Increase in migraine frequency and comorbidities was associated with higher HCRU. Eighty-eight percent of the respondents reported negative impact on working life and 52% experienced overall work productivity impairment. Over previous month, the mean number of missed working days for all respondents was 2.8 days of which 54% were paid sick leave days, and in CM up to 6.0 days and 30%, respectively. Both absenteeism and presenteeism were higher in the CM group.

Conclusions
The emotional and functional burden was high, and the societal burden increased by frequency and severity of migraine, as shown by higher HCRU and reduced work productivity. There is a need to improve quality of care in migraine and improve migraine management related issues in both healthcare and society in Finland.
Adverse effects in the fish embryo acute toxicity (FET) test: a catalogue of unspecific morphological changes versus more specific effects in zebrafish (Danio rerio) embryos
Authors: von Hellfeld Rebecca , Brotzmann Katharina , Baumann Lisa , Strecker Ruben , Braunbeck Thomas 
Published: September 2020

Abstract
Background
The Fish Embryo Acute Toxicity (FET) test with the zebrafish (Danio rerio) embryo, the OECD test guideline (TG) 236, has been designed as an alternative for acute fish toxicity testing such as the OECD Acute Fish Toxicity Test (TG 203). To provide equivalent sensitivity to the acute fish test, the original FET test was designed to use only four morphological core endpoints: coagulation of the embryo, lack of somite formation, lack of heart beat, and non-detachment of the tail. These endpoints were selected due to (1) their association with mortality, directly or indirectly, (2) improve the practicality for screening by well-trained technical staff, and (3) the endpoints being relatively simple morphological alterations.

Results
With the growing need to understand the developmental toxicity of compounds found in the environment, the FET protocol has repeatedly been extended to a multitude of additional morphological endpoints that also allow the monitoring of teratogenicity. As the extensive use of the FET test has generated a multitude of observations in the scientific literature, a harmonisation of the terminology used for the description of the morphological effects seen after chemical exposure has become necessary.

Conclusion
For this end, the present communication provides an overview of both common and selected more specific morphological effects seen in zebrafish embryos after exposure to a wide variety of chemical substances together with suggestions for a harmonised nomenclature.
Polychlorinated biphenyls and organochlorine pesticides in water and sediment from Volturno River, Southern Italy: occurrence, distribution and risk assessment
Authors: Montuori Paolo , De Rosa Elvira , Sarnacchiaro Pasquale , Di Duca Fabiana , Provvisiero Donatella Paola , Nardone Antonio , Triassi Maria 
Published: September 2020

Abstract
Background
To assess the Volturno River pollution and its environmental impact on the Tyrrhenian Sea (Central Mediterranean Sea) caused by Polychlorinated biphenyls (PCBs) and Organochlorine pesticides (OCPs), 32 PCBs and aldrin, α-BHC, β-BHC, δ-BHC, γ-BHC (lindane), 4,4′- DDD, 4,4′-DDE, 4,4′-DDT, dieldrin, endosulfan I, endosulfan II, endosulfan sulphate, endrin, heptachlor, heptachlor epoxide (isomer B) and methoxychlor have been selected and were analyzed in three different phases: dissolved phase (DP), suspended particulate matter (SPM) and sediments. PCBs and OCPs were extracted using an SPE column for the DP and glass fiber filter for SPM and sediment samples. Cleaned extracts were analyzed by gas chromatography with electron capture detector (ECD) and mass spectrometry (MS) detector for PCBs and OCPs, respectively.

Results
Pollutants discharges of PCBs and OCPs into the sea were calculated in about 106.9 kg year−1 (87.1 kg year−1 of PCBs and 19.7 kg year−1 of OCPs), showing that this river could be a major source of PCBs and OCPs pollution to the Central Mediterranean Sea. Total concentrations of PCBs ranged from 4.1 to 48.0 ng L−1 in water (sum of DP and SPM) and from 4.3 to 64.3 ng g−1 in sediment samples. The concentrations of total organochlorine pesticides (OCPs) obtained in water (sum of DP and SPM) ranged from 0.93 to 8.66 ng L−1 and from 0.52 to 9.89 ng g−1 in sediment samples. Principal component analysis shows that all PCB compounds are more likely to come from surface runoff than an atmospheric deposition.

Conclusion
The data show that higher levels of PCBs and OCPs were found in sediment samples than in DP and SPM samples, which are an indication of no fresh inputs of these compounds. Based on our results, unintentionally produced PCBs by industrial processes (and other processes) were considered to be the main sources of PCBs in Volturno River and Estuary sediments. Considering the Sediment Quality Guidelines (SQGs), the Ecological Risk Index (ERI), the Risk Quotient (RQ) and the USEPA Environmental Quality Standards (EQS), the Volturno River and its Estuary would be considered an area in which the integrity is possibly at risk.
Application of the common base method to regression and analysis of covariance (ANCOVA) in qPCR experiments and subsequent relative expression calculation
Authors: Ganger Michael T. , Dietz Geoffrey D. , Headley Patrick , Ewing Sarah J. 
Published: September 2020

Abstract
Background
Quantitative polymerase chain reaction (qPCR) is the technique of choice for quantifying gene expression. While the technique itself is well established, approaches for the analysis of qPCR data continue to improve.

Results
Here we expand on the common base method to develop procedures for testing linear relationships between gene expression and either a measured dependent variable, independent variable, or expression of another gene. We further develop functions relating variables to a relative expression value and develop calculations for determination of associated confidence intervals.

Conclusions
Traditional qPCR analysis methods typically rely on paired designs. The common base method does not require such pairing of samples. It is therefore applicable to other designs within the general linear model such as linear regression and analysis of covariance. The methodology presented here is also simple enough to be performed using basic spreadsheet software.
A comparative genomics study of neuropeptide genes in the cnidarian subclasses Hexacorallia and Ceriantharia
Authors: Koch Thomas L. , Grimmelikhuijzen Cornelis J. P. 
Published: September 2020

Abstract
Background
Nervous systems originated before the split of Proto- and Deuterostomia, more than 600 million years ago. Four animal phyla (Cnidaria, Placozoa, Ctenophora, Porifera) diverged before this split and studying these phyla could give us important information on the evolution of the nervous system. Here, we have annotated the neuropeptide preprohormone genes of twenty species belonging to the subclass Hexacorallia or Ceriantharia (Anthozoa: Cnidaria), using thirty-seven publicly accessible genome or transcriptome databases. Studying hexacorals is important, because they are versatile laboratory models for development (e.g., Nematostella vectensis) and symbiosis (e.g., Exaiptasia diaphana) and also are prominent reef-builders.

Results
We found that each hexacoral or ceriantharian species contains five to ten neuropeptide preprohormone genes. Many of these preprohormones contain multiple copies of immature neuropeptides, which can be up to 50 copies of identical or similar neuropeptide sequences. We also discovered preprohormones that only contained one neuropeptide sequence positioned directly after the signal sequence. Examples of them are neuropeptides that terminate with the sequence RWamide (the Antho-RWamides). Most neuropeptide sequences are N-terminally protected by pyroglutamyl (pQ) or one or more prolyl residues, while they are C-terminally protected by an amide group. Previously, we isolated and sequenced small neuropeptides from hexacorals that were N-terminally protected by an unusual L-3-phenyllactyl group. In our current analysis, we found that these N-phenyllactyl-peptides are derived from N-phenylalanyl-peptides located directly after the signal sequence of the preprohormone. The N-phenyllactyl- peptides appear to be confined to the hexacorallian order Actiniaria and do not occur in other cnidarians. On the other hand, (1) the neuropeptide Antho-RFamide (pQGRFamide); (2) peptides with the C-terminal sequence GLWamide; and (3) tetrapeptides with the X1PRX2amide consensus sequence (most frequently GPRGamide) are ubiquitous in Hexacorallia.

Conclusions
We found GRFamide, GLWamide, and X1PRX2amide peptides in all tested Hexacorallia. Previously, we discovered these three neuropeptide classes also in Cubozoa, Scyphozoa, and Staurozoa, indicating that these neuropeptides originated in the common cnidarian ancestor and are evolutionarily ancient. In addition to these ubiquitous neuropeptides, other neuropeptides appear to be confined to specific cnidarian orders or subclasses.
Flagella by numbers: comparative genomic analysis of the supernumerary flagellar systems among the Enterobacterales
Authors: De Maayer Pieter , Pillay Talia , Coutinho Teresa A. 
Published: September 2020

Abstract
Background
Flagellar motility is an efficient means of movement that allows bacteria to successfully colonize and compete with other microorganisms within their respective environments. The production and functioning of flagella is highly energy intensive and therefore flagellar motility is a tightly regulated process. Despite this, some bacteria have been observed to possess multiple flagellar systems which allow distinct forms of motility.

Results
Comparative genomic analyses showed that, in addition to the previously identified primary peritrichous (flag-1) and secondary, lateral (flag-2) flagellar loci, three novel types of flagellar loci, varying in both gene content and gene order, are encoded on the genomes of members of the order Enterobacterales. The flag-3 and flag-4 loci encode predicted peritrichous flagellar systems while the flag-5 locus encodes a polar flagellum. In total, 798/4028 (~ 20%) of the studied taxa incorporate dual flagellar systems, while nineteen taxa incorporate three distinct flagellar loci. Phylogenetic analyses indicate the complex evolutionary histories of the flagellar systems among the Enterobacterales.

Conclusions
Supernumerary flagellar loci are relatively common features across a broad taxonomic spectrum in the order Enterobacterales. Here, we report the occurrence of five (flag-1 to flag-5) flagellar loci on the genomes of enterobacterial taxa, as well as the occurrence of three flagellar systems in select members of the Enterobacterales. Considering the energetic burden of maintaining and operating multiple flagellar systems, they are likely to play a role in the ecological success of members of this family and we postulate on their potential biological functions.
In vitro resynthesis of lichenization reveals the genetic background of symbiosis-specific fungal-algal interaction in Usnea hakonensis
Authors: Kono Mieko , Kon Yoshiaki , Ohmura Yoshihito , Satta Yoko , Terai Yohey 
Published: September 2020

Abstract
Background
Symbiosis is central to ecosystems and has been an important driving force of the diversity of life. Close and long-term interactions are known to develop cooperative molecular mechanisms between the symbiotic partners and have often given them new functions as symbiotic entities. In lichen symbiosis, mutualistic relationships between lichen-forming fungi and algae and/or cyanobacteria produce unique features that make lichens adaptive to a wide range of environments. Although the morphological, physiological, and ecological uniqueness of lichens has been described for more than a century, the genetic mechanisms underlying this symbiosis are still poorly known.

Results
This study investigated the fungal-algal interaction specific to the lichen symbiosis using Usnea hakonensis as a model system. The whole genome of U. hakonensis, the fungal partner, was sequenced by using a culture isolated from a natural lichen thallus. Isolated cultures of the fungal and the algal partners were co-cultured in vitro for 3 months, and thalli were successfully resynthesized as visible protrusions. Transcriptomes of resynthesized and natural thalli (symbiotic states) were compared to that of isolated cultures (non-symbiotic state). Sets of fungal and algal genes up-regulated in both symbiotic states were identified as symbiosis-related genes.

Conclusion
From predicted functions of these genes, we identified genetic association with two key features fundamental to the symbiotic lifestyle in lichens. The first is establishment of a fungal symbiotic interface: (a) modification of cell walls at fungal-algal contact sites; and (b) production of a hydrophobic layer that ensheaths fungal and algal cells;. The second is symbiosis-specific nutrient flow: (a) the algal supply of photosynthetic product to the fungus; and (b) the fungal supply of phosphorous and nitrogen compounds to the alga. Since both features are widespread among lichens, our result may indicate important facets of the genetic basis of the lichen symbiosis.
Development of a SNP linkage map and genome-wide association study for resistance to Aeromonas hydrophila in pacu (Piaractus mesopotamicus)
Authors: Mastrochirico-Filho Vito A. , Borges Carolina H. S. , Freitas Milena V. , Ariede Raquel B. , Pilarski Fabiana , Utsunomia Ricardo , Carvalheiro Roberto , Gutierrez Alejandro P. , Peñaloza Carolina , Yáñez José M. , Houston Ross D. , Hashimoto Diogo T. 
Published: September 2020

Abstract
Background
Pacu (Piaractus mesopotamicus) is one of the most important Neotropical aquaculture species from South America. Disease outbreaks caused by Aeromonas hydrophila infection have been considered significant contributors to the declining levels of pacu production. The current implementation of genomic selection for disease resistance has been adopted as a powerful strategy for improvement in fish species. This study aimed to investigate the genetic architecture of resistance to A. hydrophila in pacu via Genome-Wide Association Study (GWAS), the identification of suggestive Quantitative Trait Loci (QTLs) and putative genes associated with this trait. The genetic data were obtained from 381 juvenile individuals belonging to 14 full-sibling families. An experimental challenge was performed to gain access to the levels of genetic variation for resistance against the bacteria using the following trait definitions: binary test survival (TS) and time of death (TD).

Results
The analyses of genetic parameters estimated moderate heritability (h2) for both resistance traits: 0.20 (± 0.09) for TS and 0.35 (± 0.15) for TD. A linkage map for pacu was developed to enable the GWAS, resulting in 27 linkage groups (LGs) with 17,453 mapped Single Nucleotide Polymorphisms (SNPs). The length of the LGs varied from 79.95 (LG14) to 137.01 (LG1) cM, with a total map length of 2755.60 cM. GWAS identified 22 putative QTLs associated to A. hydrophila resistance. They were distributed into 17 LGs, and were considered suggestive genomic regions explaining > 1% of the additive genetic variance (AGV) for the trait. Several candidate genes related to immune response were located close to the suggestive QTLs, such as tbk1, trim16, Il12rb2 and lyz2.

Conclusion
This study describes the development of the first medium density linkage map for pacu, which will be used as a framework to study relevant traits to the production of this species. In addition, the resistance to A. hydrophila was found to be moderately heritable but with a polygenic architecture suggesting that genomic selection, instead of marker assisted selection, might be useful for efficiently improving resistance to one of the most problematic diseases that affects the South American aquaculture.
Primary care physician perspectives on barriers to diagnosing axial Spondyloarthritis: a qualitative study
Authors: Lapane Kate L. , Khan Sara , Shridharmurthy Divya , Beccia Ariel , Dubé Catherine , Yi Esther , Kay Jonathan , Liu Shao-Hsien 
Published: September 2020

Abstract
Background
The average delay in diagnosis for patients with axial spondyloarthritis (axSpA) is 7 to 10 years. Factors that contribute to this delay are multifactorial and include the lack of diagnostic criteria (although classification criteria exist) for axSpA and the difficulty in distinguishing inflammatory back pain, a key symptom of axSpA, from other highly prevalent forms of low back pain. We sought to describe reasons for diagnostic delay for axSpA provided by primary care physicians.

Methods
We conducted a qualitative research study which included 18 US primary care physicians, balanced by gender. Physicians provided informed consent to participate in an in-depth interview (< 60 min), conducted in person (n = 3) or over the phone (n = 15), in 2019. The analysis focuses on thoughts about factors contributing to diagnostic delay in axSpA.

Results
Physicians noted that the disease characteristics contributing to diagnostic delay include: back pain is common and axSpA is less prevalent, slow progression of axSpA, intermittent nature of axSpA pain, and in the absence of abnormal radiographs of the spine or sacroiliac joints, there is no definitive test for axSpA. Patient characteristics believed to contribute to diagnostic delay included having multiple conditions in need of attention, infrequent interactions with the health care system, and “doctor shopping.” Doctors noted that patients wait until the last moments of the clinical encounter to discuss back pain. Problematic physician characteristics included lack of rapport with patients, lack of setting appropriate expectations, and attribution of back pain to other factors. Structural/system issues included short appointments, lack of continuity of care, insufficient insurance coverage for tests, lack of back pain clinics, and a shortage of rheumatologists.

Conclusion
Primary care physicians agreed that lengthy axSpA diagnosis delays are challenging to address owing to the multifactorial causes (e.g., disease characteristics, patient characteristics, lack of definitive tests, system factors).
The association between inflammatory potential of diet and disease activity: results from a cross-sectional study in patients with inflammatory bowel disease
Authors: Lamers Carlijn R. , de Roos Nicole M. , Witteman Ben J. M. 
Published: September 2020

Abstract
Background
Diet may play a role in disease status in patients with inflammatory bowel disease. We tested whether the inflammatory potential of diet, based on a summation of pro- and anti-inflammatory nutrients, is associated with disease activity in patients with Crohn’s disease and ulcerative colitis.

Methods
Participants completed a disease activity questionnaire (short Crohn’s Disease Activity (sCDAI) or Patient Simple Clinical Colitis Activity Index (P-SCCAI)) and a Food Frequency Questionnaire (FFQ). FFQ data were used to calculate the Dietary Inflammatory Index (DII) which enables categorization of individuals’ diets according to their inflammatory potential on a continuum from pro- to anti-inflammatory. Associations with disease activity were investigated by multiple linear regression.

Results
The analysis included 329 participants; 168 with Crohn’s disease (median sCDAI score 93 [IQR 47–156]), and 161 with ulcerative colitis (median P-SCCAI score 1 [IQR 1–3]). Mean DII was 0.71 ± 1.33, suggesting a slightly pro-inflammatory diet. In Crohn’s disease, the DII was positively associated with disease activity, even after adjustment for confounders (p = 0.008). The mean DII was significantly different between participants in remission and with mild and moderately active disease (0.64, 0.97 and 1.52 respectively, p = 0.027). In ulcerative colitis, the association was not significant.

Conclusions
Disease activity was higher in IBD participants with a more pro-inflammatory diet with statistical significance in Crohn’s disease. Although the direction of causality is not clear, this association strengthens the role for diet in medical treatment, which should be tested in an intervention study.