bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ionospheric Response at Conjugate Locations During the 7–8 September 2017 Geomagnetic Storm Over the Europe‐African Longitude Sector
Authors: Habarulema John Bosco , Katamzi‐Joseph Zama T. , Burešová Dalia , Nndanganeni Rendani , Matamba Tshimangadzo , Tshisaphungo Mpho , Buchert Stephan , Kosch Michael , Lotz Stefan , Cilliers Pierre , Mahrous Ayman 
Published: September 2020

AbstractThis paper focuses on unique aspects of the ionospheric response at conjugate locations over Europe and South Africa during the 7–8 September 2017 geomagnetic storm including the role of the bottomside and topside ionosphere and plasmasphere in influencing electron density changes. Analysis of total electron content (TEC) on 7 September 2017 shows that for a pair of geomagnetically conjugate locations, positive storm effect was observed reaching about 65% when benchmarked on the monthly median TEC variability in the Northern Hemisphere, while the Southern Hemisphere remained within the quiet time variability threshold of ±40%. Over the investigated locations, the Southern Hemisphere midlatitudes showed positive TEC deviations that were in most cases twice the comparative response level in the Northern Hemisphere on the 8 September 2017. During the storm main phase on 8 September 2017, we have obtained an interesting result of ionosonde maximum electron density of the F2 layer and TEC derived from Global Navigation Satellite System (GNSS) observations showing different ionospheric responses over the same midlatitude location in the Northern Hemisphere. In situ electron density measurements from SWARM satellite aided by bottomside ionosonde‐derived TEC up to the maximum height of the F2 layer (hmF2) revealed that the bottomside and topside ionosphere as well as plasmasphere electron content contributions to overall GNSS‐derived TEC were different in both hemispheres especially for 8 September 2017 during the storm main phase. The differences in hemispheric response at conjugate locations and on a regional scale have been explained in terms of seasonal influence on the background electron density coupled with the presence of large‐scale traveling ionospheric disturbances and low‐latitude‐associated processes. The major highlight of this study is the simultaneous confirmation of most of the previously observed features and their underlying physical mechanisms during geomagnetic storms through a multi–data set examination of hemispheric differences.
Soil moisture dominates dryness stress on ecosystem production globally
Authors: Liu Laibao , Gudmundsson Lukas , Hauser Mathias , Qin Dahe , Li Shuangcheng , Seneviratne Sonia I. 
Published: September 2020

AbstractDryness stress can limit vegetation growth and is often characterized by low soil moisture (SM) and high atmospheric water demand (vapor pressure deficit, VPD). However, the relative role of SM and VPD in limiting ecosystem production remains debated and is difficult to disentangle, as SM and VPD are coupled through land-atmosphere interactions, hindering the ability to predict ecosystem responses to dryness. Here, we combine satellite observations of solar-induced fluorescence with estimates of SM and VPD and show that SM is the dominant driver of dryness stress on ecosystem production across more than 70% of vegetated land areas with valid data. Moreover, after accounting for SM-VPD coupling, VPD effects on ecosystem production are much smaller across large areas. We also find that SM stress is strongest in semi-arid ecosystems. Our results clarify a longstanding question and open new avenues for improving models to allow a better management of drought risk.
Identification of a herpes simplex virus 1 gene encoding neurovirulence factor by chemical proteomics
Authors: Kato Akihisa , Adachi Shungo , Kawano Shuichi , Takeshima Kousuke , Watanabe Mizuki , Kitazume Shinobu , Sato Ryota , Kusano Hideo , Koyanagi Naoto , Maruzuru Yuhei , Arii Jun , Hatta Tomohisa , Natsume Tohru , Kawaguchi Yasushi 
Published: September 2020

AbstractIdentification of the complete set of translated genes of viruses is important to understand viral replication and pathogenesis as well as for therapeutic approaches to control viral infection. Here, we use chemical proteomics, integrating bio-orthogonal non-canonical amino acid tagging and high-resolution mass spectrometry, to characterize the newly synthesized herpes simplex virus 1 (HSV-1) proteome in infected cells. In these infected cells, host cellular protein synthesis is shut-off, increasing the chance to preferentially detect viral proteomes. We identify nine previously cryptic orphan protein coding sequences whose translated products are expressed in HSV-1-infected cells. Functional characterization of one identified protein, designated piUL49, shows that it is critical for HSV-1 neurovirulence in vivo by regulating the activity of virally encoded dUTPase, a key enzyme that maintains accurate DNA replication. Our results demonstrate that cryptic orphan protein coding genes of HSV-1, and probably other large DNA viruses, remain to be identified.
Solution structure of the Hop TPR2A domain and investigation of target druggability by NMR, biochemical and in silico approaches
Authors: Darby John F. , Vidler Lewis R. , Simpson Peter J. , Al-Lazikani Bissan , Matthews Stephen J. , Sharp Swee Y. , Pearl Laurence H. , Hoelder Swen , Workman Paul 
Published: September 2020

AbstractHeat shock protein 90 (Hsp90) is a molecular chaperone that plays an important role in tumour biology by promoting the stabilisation and activity of oncogenic ‘client’ proteins. Inhibition of Hsp90 by small-molecule drugs, acting via its ATP hydrolysis site, has shown promise as a molecularly targeted cancer therapy. Owing to the importance of Hop and other tetratricopeptide repeat (TPR)-containing cochaperones in regulating Hsp90 activity, the Hsp90-TPR domain interface is an alternative site for inhibitors, which could result in effects distinct from ATP site binders. The TPR binding site of Hsp90 cochaperones includes a shallow, positively charged groove that poses a significant challenge for druggability. Herein, we report the apo, solution-state structure of Hop TPR2A which enables this target for NMR-based screening approaches. We have designed prototype TPR ligands that mimic key native ‘carboxylate clamp’ interactions between Hsp90 and its TPR cochaperones and show that they block binding between Hop TPR2A and the Hsp90 C-terminal MEEVD peptide. We confirm direct TPR-binding of these ligands by mapping 1H–15N HSQC chemical shift perturbations to our new NMR structure. Our work provides a novel structure, a thorough assessment of druggability and robust screening approaches that may offer a potential route, albeit difficult, to address the chemically challenging nature of the Hop TPR2A target, with relevance to other TPR domain interactors.
Mg or Zn for Ca substitution improves the sintering of bioglass 45S5
Authors: Wetzel R. , Blochberger M. , Scheffler F. , Hupa L. , Brauer Delia S. 
Published: September 2020

AbstractBioglass 45S5 is well-known for its bioactivity, but it possesses poor sintering behaviour owing to viscous flow being inhibited by the crystallisation of sodium calcium silicate phases. Mg or Zn were partially (0, 25, 50, 75%) or fully (100%) substituted for Ca on a molar base, and thermal properties (differential scanning calorimetry, dilatometry) and sintering (heating microscopy, SEM and X-ray diffraction) were investigated. Here we show that sintering can be improved significantly by partial or complete substitution of Mg or Zn for Ca, owing to a pronounced decrease in crystallisation tendency. Glass transition temperature and dilatometric softening point went through minima for mixed compositions, with random mixing of Mg/Ca or Zn/Ca ions in the glass structure and the resulting effect on configurational entropy being a likely explanation. As the onset of crystallisation did not vary much with substitution, substituted glasses possessed a wider temperature range for sintering, resulting in up to 57% and 27% sample height reduction for Mg and Zn substituted glasses, respectively, compared to only 3% height reduction for Bioglass 45S5. Taken together, these results suggest that using a combination of modifiers, particularly alkaline earths or zinc, may be a promising approach for improving the sintering of Bioglass 45S5.
Proteomic analysis of plasma proteins of high-flux haemodialysis and on-line haemodiafiltration patients reveals differences in transthyretin levels related with anaemia
Authors: Martínez-Alonso Emma , Alcázar Paula , Camafeita Emilio , Fernández-Lucas Milagros , Ruíz-Roso Gloria , Alcázar Alberto 
Published: September 2020

AbstractA large proportion of end-stage renal disease (ESRD) patients under long-term haemodialysis, have persistent anaemia and require high doses of recombinant human erythropoietin (rhEPO). However, the underlying mechanisms of renal anaemia have not been fully elucidated in these patients. In this study, we will be focusing on anaemia and plasma proteins in ESRD patients on high-flux haemodialysis (HF) and on-line haemodiafiltration (HDF), to investigate using two proteomic approaches if patients undergoing these treatments develop differences in their plasma protein composition and how this could be related to their anaemia. The demographic and biochemical data revealed that HDF patients had lower anaemia and much lower rhEPO requirements than HF patients. Regarding their plasma proteomes, HDF patients had increased levels of a protein highly similar to serotransferrin, trypsin-1 and immunoglobulin heavy constant chain alpha-1, and lower levels of alpha-1 antitrypsin, transthyretin, apolipoproteins E and C-III, and haptoglobin-related protein. Lower transthyretin levels in HDF patients were further confirmed by transthyretin-peptide quantification and western blot detection. Since ESRD patients have increased transthyretin, a protein that can aggregate and inhibit transferrin endocytosis and erythropoiesis, our finding that HDF patients have lower transthyretin and lower anaemia suggests that the decrease in transthyretin plasma levels would allow an increase in transferrin endocytosis, contributing to erythropoiesis. Thus, transthyretin could be a critical actor for anaemia in ESRD patients and a novel player for haemodialysis adequacy.
Emerging MDR-Pseudomonas aeruginosa in fish commonly harbor oprL and toxA virulence genes and blaTEM, blaCTX-M, and tetA antibiotic-resistance genes
Authors: Algammal Abdelazeem M. , Mabrok Mahmoud , Sivaramasamy Elayaraja , Youssef Fatma M. , Atwa Mona H. , El-kholy Ali W. , Hetta Helal F. , Hozzein Wael N. 
Published: September 2020

AbstractThis study aimed to investigate the prevalence, antibiogram of Pseudomonasaeruginosa (P.aeruginosa), and the distribution of virulence genes (oprL,exoS, phzM, and toxA) and the antibiotic-resistance genes (blaTEM, tetA, and blaCTX-M). A total of 285 fish (165 Oreochromisniloticus and 120 Clariasgariepinus) were collected randomly from private fish farms in Ismailia Governorate, Egypt. The collected specimens were examined bacteriologically. P. aeruginosa was isolated from 90 examined fish (31.57%), and the liver was the most prominent infected organ. The antibiogram of the isolated strains was determined using a disc diffusion method, where the tested strains exhibited multi-drug resistance (MDR) to amoxicillin, cefotaxime, tetracycline, and gentamicin. The PCR results revealed that all the examined strains harbored (oprL and toxA) virulence genes, while only 22.2% were positive for the phzM gene. On the contrary, none of the tested strains were positive for the exoS gene. Concerning the distribution of the antibiotic resistance genes, the examined strains harbored blaTEM, blaCTX-M, and tetA genes with a total prevalence of 83.3%, 77.7%, and 75.6%, respectively. Experimentally infected fish with P.aeruginosa displayed high mortalities in direct proportion to the encoded virulence genes and showed similar signs of septicemia found in the naturally infected one. In conclusion, P.aeruginosa is a major pathogen of O.niloticus and C.gariepinus.oprL and toxA genes are the most predominant virulence genes associated with P.aeruginosa infection. The blaCTX-M,blaTEM, and tetA genes are the main antibiotic-resistance genes that induce resistance patterns to cefotaxime, amoxicillin, and tetracycline, highlighting MDR P.aeruginosa strains of potential public health concern.
Structural refinement and electrochemical properties of one dimensional (ZnO NRs)1−x(CNs)x functional hybrids for serotonin sensing studies
Authors: Mullani Sajid B. , Dhodamani Ananta G. , Shellikeri Annadanesh , Mullani Navaj B. , Tawade Anita K. , Tayade Shivaji N. , Biscay Julien , Dennany Lynn , Delekar Sagar D. 
Published: September 2020

AbstractHerein, the efficient serotonin (5-HT) sensing studies have been conducted using the (ZnO NRs)1−x(CNs)x nanocomposites (NCs) having appropriate structural and electrochemical properties. Initially, the different compositions of ZnO nanorods (NRs), with varying content of carbon nanostructures (CNs=MWCNTs and RGO), are prepared using simple in-situ wet chemical method and thereafter these NCs have been characterized for physico-chemical properties in correlation to the 5-HT sensing activity. XRD Rietveld refinement studies reveal the hexagonal Wurtzite ZnO NRs oriented in (101) direction with space group ‘P63mc’ and both orientation as well as phase of ZnO NRs are also retained in the NCs due to the small content of CNs. The interconnectivity between the ZnO NRs with CNs through different functional moieties is also studied using FTIR analysis; while phases of the constituents are confirmed through Raman analysis. FESEM images of the bare/NCs show hexagonal shaped rods with higher aspect ratio (4.87) to that of others. BET analysis and EIS measurements reveal the higher surface area (97.895 m2/g), lower charge transfer resistance (16.2 kΩ) for the ZCNT 0.1 NCs to that of other NCs or bare material. Thereafter, the prepared NCs are deposited on the screen printed carbon electrode (SPCE) using chitosan as cross-linked agent for 5-HT sensing studies; conducted through cyclic voltammetry (CV) and square wave voltammetry (SWV) measurements. Among the various composites, ZCNT0.1 NCs based electrodes exhibit higher sensing activity towards 5-HT in accordance to its higher surface area, lower particle size and lower charge transfer resistance. SWV measurements provide a wide linear response range (7.5–300 μM); lower limit of detection (0.66 μM), excellent limit of quantification (2.19 μM) and good reproducibility to ZCNT 0.1 NCs as compared to others for 5-HT sensing studies.
Uridine diphosphate N-acetylglucosamine orchestrates the interaction of GlmR with either YvcJ or GlmS in Bacillus subtilis
Authors: Foulquier Elodie , Pompeo Frédérique , Byrne Deborah , Fierobe Henri-Pierre , Galinier Anne 
Published: September 2020

AbstractIn bacteria, glucosamine-6-phosphate (GlcN6P) synthase, GlmS, is an enzyme required for the synthesis of Uridine diphosphate N-acetylglucosamine (UDP-GlcNAc), a precursor of peptidoglycan. In Bacillus subtilis, an UDP-GlcNAc binding protein, GlmR (formerly YvcK), essential for growth on non-glycolytic carbon sources, has been proposed to stimulate GlmS activity; this activation could be antagonized by UDP-GlcNAc. Using purified proteins, we demonstrate that GlmR directly stimulates GlmS activity and the presence of UDP-GlcNAc (at concentrations above 0.1 mM) prevents this regulation. We also showed that YvcJ, whose gene is associated with yvcK (glmR), interacts with GlmR in an UDP-GlcNAc dependent manner. Strains producing GlmR variants unable to interact with YvcJ show decreased transformation efficiency similar to that of a yvcJ null mutant. We therefore propose that, depending on the intracellular concentration of UDP-GlcNAc, GlmR interacts with either YvcJ or GlmS. When UDP-GlcNAc concentration is high, this UDP-sugar binds to YvcJ and to GlmR, blocking the stimulation of GlmS activity and driving the interaction between GlmR and YvcJ to probably regulate the cellular role of the latter. When the UDP-GlcNAc level is low, GlmR does not interact with YvcJ and thus does not regulate its cellular role but interacts with GlmS to stimulate its activity.
Hyaluronan-carnosine conjugates inhibit Aβ aggregation and toxicity
Authors: Greco Valentina , Naletova Irina , Ahmed Ikhlas M. M. , Vaccaro Susanna , Messina Luciano , La Mendola Diego , Bellia Francesco , Sciuto Sebastiano , Satriano Cristina , Rizzarelli Enrico 
Published: September 2020

AbstractAlzheimer’s disease is the most common neurodegenerative disorder. Finding a pharmacological approach that cures and/or prevents the onset of this devastating disease represents an important challenge for researchers. According to the amyloid cascade hypothesis, increases in extracellular amyloid-β (Aβ) levels give rise to different aggregated species, such as protofibrils, fibrils and oligomers, with oligomers being the more toxic species for cells. Many efforts have recently been focused on multi-target ligands to address the multiple events that occur concurrently with toxic aggregation at the onset of the disease. Moreover, investigating the effect of endogenous compounds or a combination thereof is a promising approach to prevent the side effects of entirely synthetic drugs. In this work, we report the synthesis, structural characterization and Aβ antiaggregant ability of new derivatives of hyaluronic acid (Hy, 200 and 700 kDa) functionalized with carnosine (Car), a multi-functional natural dipeptide. The bioactive substances (HyCar) inhibit the formation of amyloid-type aggregates of Aβ42 more than the parent compounds; this effect is proportional to Car loading. Furthermore, the HyCar derivatives are able to dissolve the amyloid fibrils and to reduce Aβ-induced toxicity in vitro. The enzymatic degradation of Aβ is also affected by the interaction with HyCar.
Salvage of floral resources through re-absorption before flower abscission
Authors: Pyke Graham H. , Ren Zong-Xin , Trunschke Judith , Lunau Klaus , Wang Hong 
Published: September 2020

AbstractPlants invest floral resources, including nectar and pigment, with likely consequent reproductive costs. We hypothesized that plants, whose flowers abscise with age, reabsorb nectar and pigment before abscission. This was tested with flowers of Rhododendron decorum, which has large, conspicuous white flowers that increasingly abscise corollas as flowers age. As this species is pollinated by bees, we also hypothesized that nectar concentration would be relatively high (i.e., > 30% wt/vol) and petals would contain UV-absorbing pigment. Floral nectar volume and concentration were sampled on successive days until abscission (up to ten days old, peak at five days) and for sub-sample of four-day-old flowers. Flowers just abscised were similarly sampled. Flower colours were measured using a modified camera, with recordings of spectral reflectance for abscised and open non-abscised flowers. Pigment content was summed values of red, green, blue channels of false color photos. As expected, flowers reabsorbed almost all nectar before abscission, separately reabsorbing nectar-sugar and nectar-water, and petals contained UV-absorbing pigment. However, flowers did not reabsorb pigment and nectar-concentration was < 30% wt/vol. That flowers reabsorb nectar, not pigment, remains unexplained, though possibly pigment reabsorption is uneconomical. Understanding floral resource reabsorption therefore requires determination of biochemical mechanisms, plus costs/benefits for individual plants.
The use of high resolution melting analysis of ITS-1 for rapid differentiation of parasitic nematodes Haemonchus contortus and Ashworthius sidemi
Authors: Skorpikova Lucie , Reslova Nikol , Magdalek Jan , Vadlejch Jaroslav , Kasny Martin 
Published: September 2020

AbstractAmong gastrointestinal nematodes, haematophagous strongylidsHaemonchus contortusandAshworthius sidemibelong to the most pathogenic parasites of both domestic and wild ruminants. Correct identification of parasitic taxa is of crucial importance in many areas of parasite research, including monitoring of occurrence, epidemiological studies, or testing of effectiveness of therapy. In this study, we identifiedH. contortusandA. sidemiin a broad range of ruminant hosts that occur in the Czech Republic using morphological/morphometric and molecular approaches. As an advanced molecular method, we employed qPCR followed by High Resolution Melting analysis, specifically targeting theinternal transcribed spacer 1(ITS-1) sequence to distinguish the two nematode species. We demonstrate that High Resolution Melting curves allow for taxonomic affiliation, making it a convenient, rapid, and reliable identification tool.
Plasticity in nest site choice behavior in response to hydric conditions in a reptile
Authors: Doody J. Sean , McGlashan Jessica , Fryer Harry , Coleman Lizzy , James Hugh , Soennichsen Kari , Rhind David , Clulow Simon 
Published: September 2020

AbstractNatural selection is expected to select for and maintain maternal behaviors associated with choosing a nest site that promotes successful hatching of offspring, especially in animals that do not exhibit parental care such as reptiles. In contrast to temperature effects, we know little about how soil moisture contributes to successful hatching and particularly how it shapes nest site choice behavior in nature. The recent revelation of exceptionally deep nesting in lizards under extreme dry conditions underscored the potential for the hydric environment in shaping the evolution of nest site choice. But if deep nesting is an adaptation to dry conditions, is there a plastic component such that mothers would excavate deeper nests in drier years? We tested this hypothesis by excavating communal warrens of a large, deep-nesting monitor lizard (Varanus panoptes), taking advantage of four wet seasons with contrasting rainfall amounts. We found 75 nests during two excavations, including 45 nests after a 4-year period with larger wet season rainfall and 30 nests after a 4-year period with smaller wet season rainfall. Mothers nested significantly deeper in years associated with drier nesting seasons, a finding best explained as a plastic response to soil moisture, because differences in both the mean and variance in soil temperatures between 1 and 4 m deep are negligible. Our data are novel for reptiles in demonstrating plasticity in maternal behavior in response to hydric conditions during the time of nesting. The absence of evidence for other ground-nesting reptile mothers adjusting nest depth in response to a hydric-depth gradient is likely due to the tradeoff between moisture and temperature with changing depth; most ground-nesting reptile eggs are deposited at depths of ~ 2–25 cm—nesting deeper within or outside of that range of depths to achieve higher soil moisture would also generally create cooler conditions for embryos that need adequate heat for successful development. In contrast, extreme deep nesting in V. panoptes allowed us to disentangle temperature and moisture. Broadly, our data suggest that ground-nesting reptiles can assess soil moisture and respond by adjusting the depth of the nest, but may not, due to the cooling effect of nesting deeper. Our results, within the context of previous work, provide a more complete picture of how mothers can promote hatching success through adjustments in nest site choice behavior.