bluuebunny/crossref_metadata_2025_split huggingface dataset:
Exposure to Oil and Hypoxia Results in Alterations of Immune Transcriptional Patterns in Developing Sheepshead Minnows (Cyprinodon variegatus)
Authors: Rodgers Maria L. , Simning Danielle , Sepúlveda Maria S. , De Guise Sylvain , Bosker Thijs , Griffitt Robert J. 
Published: February 2020

AbstractThe area and timing of the Deepwater Horizon oil spill highlight the need to study oil and hypoxia exposure in early life stage fishes. Though critical to health, little research has targeted the effect of oil and hypoxia exposure on developing immune systems. To this end, we exposed sheepshead minnows (Cyprinodon variegatus) at three early life stages: embryonic; post-hatch; and post-larval, to a high energy water accommodated fraction (HEWAF) of oil, hypoxia, or both for 48 hours. We performed RNAseq to understand how exposures alter expression of immune transcripts and pathways. Under control conditions, the embryonic to post-hatch comparison (first transition) had a greater number of significantly regulated immune pathways than the second transition (post-hatch to post-larval). The addition of oil had little effect in the first transition, however, hypoxia elicited changes in cellular and humoral immune responses. In the second transition, oil exposure significantly altered many immune pathways (43), and while hypoxia altered few pathways, it did induce a unique signature of generally suppressing immune pathways. These data suggest that timing of exposure to oil and/or hypoxia matters, and underscores the need to further investigate the impacts of multiple stressors on immune system development in early life stage fishes.
Three-dimensional periodontal tissue regeneration using a bone-ligament complex cell sheet
Authors: Raju Resmi , Oshima Masamitsu , Inoue Miho , Morita Tsuyoshi , Huijiao Yan , Waskitho Arief , Baba Otto , Inoue Masahisa , Matsuka Yoshizo 
Published: February 2020

AbstractPeriodontal tissue is a distinctive tissue structure composed three-dimensionally of cementum, periodontal ligament (PDL) and alveolar bone. Severe periodontal diseases cause fundamental problems for oral function and general health, and conventional dental treatments are insufficient for healing to healthy periodontal tissue. Cell sheet technology has been used in many tissue regenerations, including periodontal tissue, to transplant appropriate stem/progenitor cells for tissue regeneration of a target site as a uniform tissue. However, it is still difficult to construct a three-dimensional structure of complex tissue composed of multiple types of cells, and the transplantation of a single cell sheet cannot sufficiently regenerate a large-scale tissue injury. Here, we fabricated a three-dimensional complex cell sheet composed of a bone-ligament structure by layering PDL cells and osteoblast-like cells on a temperature responsive culture dish. Following ectopic and orthotopic transplantation, only the complex cell sheet group was demonstrated to anatomically regenerate the bone-ligament structure along with the functional connection of PDL-like fibers to the tooth root and alveolar bone. This study represents successful three-dimensional tissue regeneration of a large-scale tissue injury using a bioengineered tissue designed to simulate the anatomical structure.
Diagnostic information Profiling and Evaluation of Causative Fungi of Fungal Keratitis Using High-throughput Internal Transcribed Spacer Sequencing
Authors: Ren Zhichao , Liu Qing , Wang Yuqian , Dong Yanling , Huang Yusen 
Published: February 2020

AbstractEarly and accurate diagnosis is essential for the targeted management of fungal keratitis (FK), which is one of the major blinding eye diseases worldwide. To elucidate the diagnostic information of high-throughput internal transcribed spacer (ITS) sequencing for identifying causative fungi of FK, 38 patients who were highly suspected of having FK were included in this research. In vivo confocal microscopy, potassium hydroxide smear, and fungal culture were performed to diagnose FK. Culture and ITS sequencing were used to identify causative fungi. We hypothesized that the dominant genus was the result of pathogen identification by ITS sequencing. Thirty-five patients were eventually diagnosed with FK, with fungal pathogens found by confocal microscopy in 27 patients (77.14%), by smear examination in 27 patients (77.14%), by culture in 25 patients (71.43%), and by ITS sequencing in 26 patients (74.29%). Eight causative fungal genera were determined by ITS sequencing, while five causative fungal genera were identified based on the morphology of the cultured pathogens. The results of ITS sequencing and culture were coincident in 10 patients with FK (28.57%). It is concluded that ITS sequencing, to some extent, challenged fungal culture and might be an optional complement in identifying fungal pathogens in corneas.
Fate of subducted argon in the deep mantle
Authors: Ono Shigeaki 
Published: February 2020

AbstractThe physical properties of argon (Ar) are investigated to 382 GPa and 3000 K using diamond anvil cell experiments and first-principles molecular dynamics. The estimated density of Ar is smaller that of the Preliminary reference Earth model (PREM) mantle, which indicates that the density crossover does not occur at the bottom of the lower mantle. A large volume dependence of the thermal pressure of Ar is revealed at pressures higher than 200 GPa, and a significant temperature dependence of the calculated effective Grüneisen parameters is confirmed at high pressures. A melting temperature of Ar is estimated from the calculation data and a significant pressure dependence is confirmed. If the pressure-temperature path of the subducted slab is lower than the critical condition, ~750 K and ~7.5 GPa, solid Ar can be carried down into the deep mantle. Melting of solid Ar in the upwelling mantle plume occurs at the bottom of the transition zone. Thus, solid Ar plays an important role in Ar recycling in the Earth’s interior.
Rebamipide promotes lacrimal duct epithelial cell survival via protecting barrier function
Authors: Tanaka Hiroshi , Nakayama Tomomichi , Tsukamoto Michiko , Watanabe Akihide , Nakamura Takahiro , Yokoi Norihiko , Sotozono Chie , Kinoshita Shigeru 
Published: February 2020

AbstractNasolacrimal duct obstruction (NLDO) is thought to be due to inflammation and fibrosis of lacrimal duct epithelial cells (LDECs). Here we investigated the effect of rebamipide, a drug that is used for the protection of the mucosa and the treatment of gastritis and gastroduodenal ulcers, on LDECs, both in vitro and in vivo. In this study, LDECs were cultured from rabbit lacrimal duct tissues, and the barrier function of LEDCs was examined in vitro via transepithelial electrical resistance (TER) measurement, with or without interleukin (IL)-6 and/or rebamipide. For the in vivo examination, benzalkonium chloride (BAC) was injected into the rabbit lacrimal ducts, followed by the application of rebamipide or a placebo vehicle alone. The results of the in vitro examination revealed a significant decrease in TER in the group treated with IL-6 alone compared with the placebo-vehicle group (p < 0.05) and the group treated with IL-6 and rebamipide (p < 0.01). The results of the in vivo examination revealed that the infiltration of neutrophils under the basement membrane and the disruption of tight junction proteins with BAC injection and rebamipide attenuates the disturbance of tissue construction. These results suggest that rebamipide protects LDECs via an anti-inflammatory effect and preserves the barrier function of those cells.
Divergent genes encoding the putative receptors for growth hormone and prolactin in sea lamprey display distinct patterns of expression
Authors: Gong Ningping , Ferreira-Martins Diogo , McCormick Stephen D. , Sheridan Mark A. 
Published: February 2020

AbstractGrowth hormone receptor (GHR) and prolactin receptor (PRLR) in jawed vertebrates were thought to arise after the divergence of gnathostomes from a basal vertebrate. In this study we have identified two genes encoding putative GHR and PRLR in sea lamprey (Petromyzon marinus) and Arctic lamprey (Lethenteron camtschaticum), extant members of one of the oldest vertebrate groups, agnathans. Phylogenetic analysis revealed that lamprey GHR and PRLR cluster at the base of gnathostome GHR and PRLR clades, respectively. This indicates that distinct GHR and PRLR arose prior to the emergence of the lamprey branch of agnathans. In the sea lamprey, GHR and PRLR displayed a differential but overlapping pattern of expression; GHR had high expression in liver and heart tissues, whereas PRLR was expressed highly in the brain and moderately in osmoregulatory tissues. Branchial PRLR mRNA levels were significantly elevated by stage 5 of metamorphosis and remained elevated through stage 7, whereas levels of GHR mRNA were only elevated in the final stage (7). Branchial expression of GHR increased following seawater (SW) exposure of juveniles, but expression of PRLR was not significantly altered. The results indicate that GHR and PRLR may both participate in metamorphosis and that GHR may mediate SW acclimation.
Dynamic response of the Greenland ice sheet to recent cooling
Authors: Williams Joshua J. , Gourmelen Noel , Nienow Peter 
Published: February 2020

AbstractThe subglacial hydrological system critically controls ice motion at the margins of the Greenland Ice Sheet. However, over multi-annual timescales, the net impact of hydro-dynamic coupling on ice motion remains poorly understood. Here, we present annual ice velocities from 1992–2019 across a ~10,600 km2 land-terminating area of southwest Greenland. From the early-2000s through to ~2012, we observe a slowdown in ice motion in response to increased surface melt, consistent with previous research. From 2013 to 2019 however, we observe an acceleration in ice motion coincident with atmospheric cooling and a ~15% reduction in mean surface melt production relative to 2003–2012. We find that ice velocity speed-up is greater in marginal areas, and is strongly correlated with ice thickness. We hypothesise that under thinner ice, increases in basal water pressure offset a larger proportion of the ice overburden pressure, leading to reduced effective pressure and thus greater acceleration when compared to thicker ice further inland. Our findings indicate that hydro-dynamic coupling provides the major control on changes in ice motion across the ablation zone of land terminating margins of the Greenland Ice Sheet over multi-annual timescales.
Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life
Authors: Shakya Migun , Ahmed Sanaa A. , Davenport Karen W. , Flynn Mark C. , Lo Chien-Chi , Chain Patrick S. G. 
Published: February 2020

AbstractThere is growing interest in reconstructing phylogenies from the copious amounts of genome sequencing projects that target related viral, bacterial or eukaryotic organisms. To facilitate the construction of standardized and robust phylogenies for disparate types of projects, we have developed a complete bioinformatic workflow, with a web-based component to perform phylogenetic and molecular evolutionary (PhaME) analysis from sequencing reads, draft assemblies or completed genomes of closely related organisms. Furthermore, the ability to incorporate raw data, including some metagenomic samples containing a target organism (e.g. from clinical samples with suspected infectious agents), shows promise for the rapid phylogenetic characterization of organisms within complex samples without the need for prior assembly.
Urban geochemical changes and pollution with potentially harmful elements in seven Russian cities
Authors: Seleznev Andrian A. , Yarmoshenko Ilia V. , Malinovsky Georgy P. 
Published: February 2020

AbstractThis paper presents results of an analysis of potentially harmful elements (PHEs, Pb, Zn and Cu) and conservative element (CE, Fe) concentrations in urban surface deposited sediment (USDS). The study was conducted in seven large Russian cities located in different geographic and climatic zones, and in territories with different geology and anthropogenic pressures: Chelyabinsk, Magnitogorsk, Nizhniy Novgorod, Nizhniy Tagil, Rostov-on-Don, Tyumen, and Ufa. The initial geochemical baseline relationships between PHEs and CE concentrations in the USDS were reconstructed for each city applying an approach based on linear weighted fitting of PHE as a function of CE with lower weights assigned to more polluted samples. The reconstructed average initial baseline Pb, Cu, and Zn concentrations varied between 17–52, 25–196, and 91–413 mg kg−1, respectively. Several new criteria for assessing the degree of geochemical transformation and pollution of the urban environment, such as the percentage of polluted samples, average pollutant concentration in polluted samples, and weighting degree index δ, were suggested and compared with common criteria, such as the PHE concentration and the geo-accumulation index. The environmental rank of a city significantly differed depending on whether the criterion for ranking was total PHE pollution or changes in comparison with the initial geochemical baseline.
Common variation in FAM155A is associated with diverticulitis but not diverticulosis
Authors: Reichert Matthias C. , Kupcinskas Juozas , Schulz Antje , Schramm Christoph , Weber Susanne N. , Krawczyk Marcin , Jüngst Christoph , Casper Markus , Grünhage Frank , Appenrodt Beate , Zimmer Vincent , Tamelis Algimantas , Lukosiene Jaune I. , Pauziene Neringa , Kiudelis Gediminas , Jonaitis Laimas , Goeser Tobias , Malinowski Maciej , Glanemann Matthias , Kupcinskas Limas , Lammert Frank 
Published: February 2020

AbstractColonic diverticulosis is a very common condition. Many patients develop diverticulitis or other complications of diverticular disease. Recent genome-wide association studies (GWAS) consistently identified three major genetic susceptibility factors for both conditions, but did not discriminate diverticulititis and diverticulosis in particular due the limitations of registry-based approaches. Here, we aimed to confirm the role of the identified variants for diverticulosis and diverticulitis, respectively, within a well-phenotyped cohort of patients who underwent colonoscopy. Risk variants rs4662344 in Rho GTPase-activating protein 15 (ARHGAP15), rs7609897 in collagen-like tail subunit of asymmetric acetylcholinesterase (COLQ) and rs67153654 in family with sequence similarity 155 A (FAM155A) were genotyped in 1,332 patients. Diverticulosis was assessed by colonoscopy, and diverticulitis by imaging, clinical symptoms and inflammatory markers. Risk of diverticulosis and diverticulitis was analyzed in regression models adjusted for cofactors. Overall, the variant inFAM155Awas associated with diverticulitis, but not diverticulosis, when controlling for age, BMI, alcohol consumption, and smoking status (ORadjusted0.49 [95% CI 0.27–0.89], p = 0.002). Our results contribute to the assessment specific genetic variants identified in GWAS in the predisposition to the development of diverticulitis in patients with diverticulosis.
Enhanced effect of recombinant human soluble thrombomodulin by ultrasound irradiation in acute liver failure
Authors: Hoshino Kota , Nakamura Yoshihiko , Nakano Takafumi , Watanabe Akiko , Sheng Hong , Tachibana Katsuro , Ishikura Hiroyasu 
Published: February 2020

AbstractThe administration of recombinant human soluble thrombomodulin (rhsTM) significantly improves liver inflammation and increases the survival rate of patients with acute liver failure (ALF). However, rhsTM is dose-dependently correlated to the risk of bleeding. Recently, ultrasound (US) was found to enhance the effect of various drugs. Thus, the present study aimed to determine the enhancement effect of US irradiation on rhsTM in ALF. rhsTM (1 mg/kg) and US (1 MHz, 0.3 W/cm2) were irradiated to the liver of lipopolysaccharide/D-galactosamine-induced ALF mice model. The post-treatment aspartate aminotransferase, alanine aminotransferase, and high-mobility group box 1 levels were significantly lower in the rhsTM + US group than in the rhsTM alone group. Histopathological findings revealed significantly reduced liver injury and apoptosis in the rhsTM + US group. By contrast, US irradiation had no effect on rhsTM and TNF-α concentration in the liver tissue. In conclusion, US irradiation enhanced the effect of rhsTM in the ALF mice model. However, further studies must be conducted to determine the exact mechanism of such enhancement effect.
Peri-Personal Space Tracing by Hand-Blink Reflex Modulation in Patients with Chronic Disorders of Consciousness
Authors: Calabrò Rocco Salvatore , Chillura Antonino , Billeri Luana , Cannavò Antonino , Buda Antonio , Molonia Francesco , Manuli Alfredo , Bramanti Placido , Naro Antonino 
Published: February 2020

AbstractThe assessment of awareness in patients with chronic Disorders of Consciousness (DoC), including Unresponsive Wakefulness Syndrome (UWS) and Minimally Conscious State (MCS), is challenging. The level of awareness impairment may depend on the degree of deterioration of the large-scale cortical-thalamo-cortical networks induced by brain injury. Electrophysiological approaches may shed light on awareness presence in patients with DoC by estimating cortical functions related to the cortical-thalamo-cortical networks including, for example, the cortico-subcortical processes generating motor responses to the perturbation of the peri-personal space (PPS). We measured the amplitude, latency, and duration of the hand-blink reflex (HBR) responses by recording electromyography (EMG) signals from both the orbicularis oculi muscles while electrically stimulating the median nerve at the wrist. Such a BR is thought to be mediated by a neural circuit at the brainstem level. Despite its defensive-response nature, HBR can be modulated by the distance between the stimulated hand and the face. This suggests a functional top-down control of HBR as reflected by HBR features changes (latency, amplitude, and magnitude). We therefore estimated HBR responses in a sample of patients with DoC (8 MCS and 12 UWS, compared to 15 healthy controls −HC) while performing a motor task targeting the PPS. This consisted of passive movements in which the hand of the subject was positioned at different distances from the participant’s face. We aimed at demonstrating a residual top-down modulation of HBR properties, which could be useful to differentiate patients with DoC and, potentially, demonstrate awareness preservation. We found a decrease in latency, and an increase in duration and magnitude of HBR responses, which were all inversely related to the hand-to-face distance in HC and patients with MCS, but not in individuals with UWS. Our data suggest that only patients with MCS have preserved, residual, top-down modulation of the processes related to the PPS from higher-order cortical areas to sensory-motor integration network. Although the sample size was relatively small, being thus our data preliminary, HBR assessment seems a rapid, easy, and first-level tool to differentiate patients with MCS from those with UWS. We may also hypothesize that such a HBR modulation suggests awareness preservation.
Ultrastructural and immunohistochemical characteristics of telocytes in human scalp tissue
Authors: Wang Li , Xiao Li , Zhang Ruzhi , Jin Huiling , Shi Haixia 
Published: February 2020

AbstractThis study was designed to characterize the location, morphology and ultrastructure of telocytes (TCs) in human scalp tissue. After obtaining approval for this study and informed consent from the patient, a scalp specimen was obtained. The distribution and morphology of TCs in human scalp tissue was assessed by immunohistochemical staining of CD34 and CD117/c-KIT, and the ultrastructure of TCs was investigated using transmission electron microscopy (TEM). Immunohistochemical staining of CD34 revealed that TCs were located in the connective tissue of human scalp, and were concentrated around hair follicles (HFs), blood vessels, sweat glands, sebaceous glands and adipose lobules. Immunohistochemical staining of CD117 revealed that TCs were mainly located in the dermis of human scalp, surrounding the HFs and sweat glands. Under TEM, TCs were seen and confirmed by their special morphological features. These cells were spindle-shaped, had small cell bodies and long thin processes, and surrounded stem cell clusters in the bulge region of HFs. These results demonstrate that TCs in human scalp were positive for CD34 and CD117, and their strategic positioning surrounding stem cells suggests their possible involvement in local regeneration, remodeling and homeostasis of the skin.
Prevalence of palatine tonsilloliths in Dominican patients of varying social classes treated in university clinics
Authors: Aragoneses J. M. , Suárez A. , Aragoneses J. , Brugal V. A. , Fernández-Domínguez M. 
Published: February 2020

AbstractThe relevance of tonsils lies not only in local but also in systemic immunity. One of the most common ailments afflicting the tonsils are palatine tonsilloliths (PT), dystrophic calcifications found in the tonsillar crypts. PT prevalence reports have been conducted for Caucasian and Asian patients, but not for black patients. The aim of this cross-sectional study is to gauge the prevalence of PT in patients who sought treatment at two university clinics in the Dominican Republic, and to analyze any links with the race of patients. Two hundred and nine consecutive patients attending the dental services of two clinics located in different cities in the Dominican Republic, from March 1 to April 30, 2019, were selected. Computed tomography scans of patients were evaluated for a PT diagnosis. Determined prevalence of PT in this population sample was 5.85%. A non-significant relationship between occurrence of PT and race or kind of health service utilized was found. Nonetheless, more white patients used private health clinics while more black patients used the public health system. Previous tonsillitis was the only factor showing a significant correlation with the occurrence of PT. Also, PT prevalence was significantly higher in patients under 40 years of age. General prevalence of PT was significantly lower than reported in previous studies involving other countries/races. Considering the limitations of this study, when comparing it to a previous similar study and taking into account the Asian- and Caucasian-centric results obtained, a race influence on prevalence of calcifications may be suggested. Despite our results showing no racial differences within the Dominican Republic, black patients appear to present a lower prevalence of PT than Caucasian and Asian patients.