bluuebunny/crossref_metadata_2025_split huggingface dataset:
Generic parameters of first-order kinetics accurately describe soil organic matter decay in bare fallow soils over a wide edaphic and climatic range
Authors: Menichetti Lorenzo , Ågren Göran I. , Barré Pierre , Moyano Fernando , Kätterer Thomas 
Published: December 2019

AbstractThe conventional soil organic matter (SOM) decay paradigm considers the intrinsic quality of SOM as the dominant decay limitation with the result that it is modelled using simple first-order decay kinetics. This view and modelling approach is often criticized for being too simplistic and unreliable for predictive purposes. It is still under debate if first-order models can correctly capture the variability in temporal SOM decay observed between different agroecosystems and climates. To address this question, we calibrated a first-order model (Q) on six long-term bare fallow field experiments across Europe. Following conventional SOM decay theory, we assumed that parameters directly describing SOC decay (rate of SOM quality change and decomposer metabolism) are thermodynamically constrained and therefore valid for all sites. Initial litter input quality and edaphic interactions (both local by definition) and microbial efficiency (possibly affected by nutrient stoichiometry) were instead considered site-specific. Initial litter input quality explained most observed kinetics variability, and the model predicted a convergence toward a common kinetics over time. Site-specific variables played no detectable role. The decay of decades-old SOM seemed mostly influenced by OM chemistry and was well described by first order kinetics and a single set of general kinetics parameters.
Autonomous lab-on-a-chip generic architecture for disposables with integrated actuation
Authors: Suska Anke , Filippini Daniel 
Published: December 2019

AbstractThe integration of actuators within disposable lab-on-a-chip devices is a demanding goal that requires reliable mechanisms, systematic fabrication procedures and marginal costs compatible with single-use devices. In this work an affordable 3D printed prototype that offers a compact and modular configuration to integrate actuation in autonomous lab-on-a-chip devices is demonstrated. The proposed concept can handle multiple step preparation protocols, such as the enzyme-linked immunosorbent assay (ELISA) configuration, by integrating reagents, volume metering capabilities with performance comparable to pipettes (e.g. 2.68% error for 5 μL volume), arbitrary dilution ratio support, effective mixing and active control of the sample injection. The chosen architecture is a manifold served by multiple injectors ending in unidirectional valves, which exchange a null dead volume when idle, thus isolating reagents until they are used. Functionalization is modularly provided by a plug-in element, which together with the selection of reagents can easily repurpose the platform to diverse targets, and this work demonstrates the systematic fabrication of 6 injectors/device at a development cost of USD$ 0.55/device. The concept was tested with a commercial ELISA kit for tumor necrosis factor (TNF), a marker for infectious, inflammatory and autoimmune disorders, and its performance satisfactorily compared with the classical microplate implementation.
A sulfur-containing volatile emitted by potato-associated bacteria confers protection against late blight through direct anti-oomycete activity
Authors: Chinchilla Delphine , Bruisson Sébastien , Meyer Silvan , Zühlke Daniela , Hirschfeld Claudia , Joller Charlotte , L’Haridon Floriane , Mène-Saffrané Laurent , Riedel Katharina , Weisskopf Laure 
Published: December 2019

AbstractPlant diseases are a major cause for yield losses and new strategies to control them without harming the environment are urgently needed. Plant-associated bacteria contribute to their host’s health in diverse ways, among which the emission of disease-inhibiting volatile organic compounds (VOCs). We have previously reported that VOCs emitted by potato-associated bacteria caused strong in vitro growth inhibition of the late blight causing agent Phytophthora infestans. This work focuses on sulfur-containing VOCs (sVOCs) and demonstrates the high in planta protective potential of S-methyl methane thiosulfonate (MMTS), which fully prevented late blight disease in potato leaves and plantlets without phytotoxic effects, in contrast to other sVOCs. Short exposure times were sufficient to protect plants against infection. We further showed that MMTS’s protective activity was not mediated by the plant immune system but lied in its anti-oomycete activity. Using quantitative proteomics, we determined that different sVOCs caused specific proteome changes in P. infestans, indicating perturbations in sulfur metabolism, protein translation and redox balance. This work brings new perspectives for plant protection against the devastating Irish Famine pathogen, while opening new research avenues on the role of sVOCs in the interaction between plants and their microbiome.
A Novel Method for Calculation of Molecular Energies and Charge Distributions by Thermodynamic Formalization
Authors: Kim TongIl , Ri ChungIl , Yun HakSung , An RyongNam , Han GwangBok , Chae SungIl , Kim GyongNam , Jong GwangChol , Jon Yung 
Published: December 2019

AbstractThe paper describes a new approach to the thermodynamic formalization for calculation of molecular energy and charge distribution in ground state by means of the variational equation of DFT. In order to thermodynamically formalize the molecular calculation, the pseudo chemical potential (PCP) is conceptualized, where a molecule is broken into multi-phase(atom) one-component(electron) systems and the energy of system is represented as PCP. Calculation of the molecular energy and atomic charge by PCP is put forward, thereafter the approach is proved to be valid and its efficiency (accuracy and calculation speed) is verified.
High beta rhythm amplitude in olfactory learning signs a well-consolidated and non-flexible behavioral state
Authors: Fourcaud-Trocmé Nicolas , Lefèvre Laura , Garcia Samuel , Messaoudi Belkacem , Buonviso Nathalie 
Published: December 2019

AbstractBeta rhythm (15–30 Hz) is a major candidate underlying long-range communication in the brain. In olfactory tasks, beta activity is strongly modulated by learning but its condition of expression and the network(s) responsible for its generation are unclear. Here we analyzed the emergence of beta activity in local field potentials recorded from olfactory, sensorimotor and limbic structures of rats performing an olfactory task. Rats performed successively simple discrimination, rule transfer, memory recall tests and contingency reversal. Beta rhythm amplitude progressively increased over learning in most recorded areas. Beta amplitude reduced to baseline when new odors were introduced, but remained high during memory recall. Intra-session analysis showed that even expert rats required several trials to reach a good performance level, with beta rhythm amplitude increasing in parallel. Notably, at the beginning of the reversal task, beta amplitude remained high while performance was low and, in all tested animals, beta amplitude decreased before rats were able to learn the new contingencies. Connectivity analysis showed that beta activity was highly coherent between all structures where it was expressed. Overall, our results suggest that beta rhythm is expressed in a highly coherent network when context learning - including both odors and reward - is consolidated and signals behavioral inflexibility.
A theoretical, dynamical evaluation method of the steric hindrance in nitroxide radicals using transition states of model reactions
Authors: Yamazaki Yudai , Naganuma Jun , Gotoh Hiroaki 
Published: December 2019

AbstractSteric hindrance is known to affect the stability, reactivity, and radical trapping ability of stable nitroxide radicals. Therefore, a quantitative evaluation and prediction model of steric hindrance is needed to select and design the optimum nitroxide radicals for specific applications. In this study, a dynamic parameter of steric hindrance (DPSH) is proposed and its characteristics are investigated. Unlike using only the equilibrium structure to evaluate the steric hindrance, DPSH is a dynamic value calculated from the theoretical activation enthalpies for two model reactions of radical addition to olefins. Using DPSH, the steric hindrance was evaluated for a total of 43 alkyl radicals, nitroxide radicals, and radicals derived from phenols, and the results were compared with those of other methods. The DPSH values for radicals can vary when the energy barrier for structural change varies, even if the equilibrium structures of the radicals have the same steric shielding. Finally, for radicals other than nitroxide radicals, the DPSH values were consistent with the predictions from their structures, which suggests that the DPSH has a wide range of applications. We expect DPSH to be used and developed in the analysis of steric factors in various reactions.
Transition Probabilities of Noise-induced Transitions of the Atlantic Ocean Circulation
Authors: Castellana Daniele , Baars Sven , Wubs Fred W. , Dijkstra Henk A. 
Published: December 2019

AbstractThe Atlantic Meridional Overturning Circulation (AMOC) is considered to be a tipping element of the climate system. As it cannot be excluded that the AMOC is in a multiple regime, transitions can occur due to atmospheric noise between the present-day state and a weaker AMOC state. For the first time, we here determine estimates of the transition probability of noise-induced transitions of the AMOC, within a certain time period, using a methodology from large deviation theory. We find that there are two types of transitions, with a partial or full collapse of the AMOC, having different transition probabilities. For the present-day state, we estimate the transition probability of the partial collapse over the next 100 years to be about 15%, with a high sensitivity of this probability to the surface freshwater noise amplitude.
Conflictual influence of humidity during shelter selection of the American cockroach (Periplaneta americana)
Authors: Calvo Martín Mariano , Nicolis Stamatios C. , Planas-Sitjà Isaac , Deneubourg Jean-Louis 
Published: December 2019

AbstractIn collective decision-making, when confronted with different options, groups usually show a more marked preference for one of the options than do isolated individuals. This results from the amplification of individual preferences by social interactions within the group. We show, in an unusual counter-example, that when facing a binary choice between shelters with different relative humidities, isolated cockroaches of the species Periplaneta americana select the wettest shelter, while groups select the driest one. This inversion of selection results from a conflictual influence of humidity on the probabilities of entering and leaving each shelter. It is shown that the individual probability of entering the wettest shelter is higher than the group probability and is increased by previous entries and exits. The probability of leaving each shelter decreases in the population due to social interactions, but this decrease is less pronounced in the wettest shelter, suggesting weaker social interactions. A theoretical model is developed and highlights the existence of tipping points dependent on population size, beyond which an inversion of selection of a resting place is observed.
Bevacizumab improves survival in metastatic colorectal cancer patients with primary tumor resection: A meta-analysis
Authors: Cao Dedong , Zheng Yongfa , Xu Huilin , Ge Wei , Xu Ximing 
Published: December 2019

AbstractIt is not well determined whether primary tumor resection is associated with better outcomes in metastatic colorectal cancer (mCRC) patients treated with bevacizumab. In this meta-analysis, we aimed to assess the prognostic role of primary tumor resection in mCRC treated with bevacizumab. Electronic databases including the Cochrane library, Embase, and Pubmed were searched until April 2018. Clinical studies assessing the influence of primary tumor resection on the efficacy of bevacizumab in patients with mCRC were identified. The primary endpoint was overall survival (OS), and the secondary endpoint was progression-free survival (PFS). Seven studies including 2760 mCRC patients were finally included. The results of the meta-analysis were in favor of bevacizumab to patients with resected primary tumor in terms of OS (HR = 0.50, 95%CI: 0.39–0.64; p < 0.01), and PFS (HR = 0.65, 95%CI: 0.51–0.81; p < 0.01). Administration of bevacizumab in mCRC patients with resected primary tumor had a better OS (HR = 0.65, 95%CI: 0.56–0.74; p < 0.01), when compared to chemotherapy(CT). Adding bevacizumab to mCRC patients without resection of primary tumor also had a better OS (HR = 0.78, 95%CI: 0.65–0.94; p < 0.01) and PFS (HR = 0.71, 95%CI: 0.57–0.88; p < 0.01) compared to chemotherapy alone. In conclusion, mCRC patients with resected primary tumor have better survival than those without surgery of primary tumor when treated with bevacizumab. Primary tumor resection status should be taken into consideration when using bevacizumab in mCRC.
Precursory worldwide signatures of earthquake occurrences on Swarm satellite data
Authors: De Santis A. , Marchetti D. , Pavón-Carrasco F. J. , Cianchini G. , Perrone L. , Abbattista C. , Alfonsi L. , Amoruso L. , Campuzano S. A. , Carbone M. , Cesaroni C. , De Franceschi G. , De Santis Anna , Di Giovambattista R. , Ippolito A. , Piscini A. , Sabbagh D. , Soldani M. , Santoro F. , Spogli L. , Haagmans R. 
Published: December 2019

AbstractThe study of the preparation phase of large earthquakes is essential to understand the physical processes involved, and potentially useful also to develop a future reliable short-term warning system. Here we analyse electron density and magnetic field data measured by Swarm three-satellite constellation for 4.7 years, to look for possible in-situ ionospheric precursors of large earthquakes to study the interactions between the lithosphere and the above atmosphere and ionosphere, in what is called the Lithosphere-Atmosphere-Ionosphere Coupling (LAIC). We define these anomalies statistically in the whole space-time interval of interest and use a Worldwide Statistical Correlation (WSC) analysis through a superposed epoch approach to study the possible relation with the earthquakes. We find some clear concentrations of electron density and magnetic anomalies from more than two months to some days before the earthquake occurrences. Such anomaly clustering is, in general, statistically significant with respect to homogeneous random simulations, supporting a LAIC during the preparation phase of earthquakes. By investigating different earthquake magnitude ranges, not only do we confirm the well-known Rikitake empirical law between ionospheric anomaly precursor time and earthquake magnitude, but we also give more reliability to the seismic source origin for many of the identified anomalies.
Localized spatial distributions of disease phases yield long-term persistence of infection
Authors: Moitra Promit , Sinha Sudeshna 
Published: December 2019

AbstractWe explore the emergence of persistent infection in two patches where the phases of disease progression of the individuals is given by the well known SIRS cycle modelling non-fatal communicable diseases. We find that a population structured into two patches with significantly different initial states, yields persistent infection, though interestingly, the infection does not persist in a homogeneous population having the same average initial composition as the average of the initial states of the two patches. This holds true for inter-patch links ranging from a single connection to connections across the entire inter-patch boundary. So a population with spatially uniform distribution of disease phases leads to disease extinction, while a population spatially separated into distinct patches aids the long-term persistence of disease. After transience, even very dissimilar patches settle down to the same average infected sub-population size. However the patterns of disease spreading in the patches remain discernibly dissimilar, with the evolution of the total number of infecteds in the two patches displaying distinct periodic wave forms, having markedly different amplitudes, though identical frequencies. We quantify the persistent infection through the size of the asymptotic infected set. We find that the number of inter-patch links does not affect the persistence in any significant manner. The most important feature determining persistence of infection is the disparity in the initial states of the patches, and it is clearly evident that persistence increases with increasing difference in the constitution of the patches. So we conclude that populations with very non-uniform distributions, where the individuals in different phases of disease are strongly compartmentalized spatially, lead to sustained persistence of disease in the entire population.
Serum circular RNAs act as blood-based biomarkers for hypertrophic obstructive cardiomyopathy
Authors: Sonnenschein Kristina , Wilczek Adriana Luisa , de Gonzalo-Calvo David , Pfanne Angelika , Derda Anselm Arthur , Zwadlo Carolin , Bavendiek Udo , Bauersachs Johann , Fiedler Jan , Thum Thomas 
Published: December 2019

AbstractHypertrophic cardiomyopathy (HCM) is one of the most common hereditary heart diseases and is associated with a high risk of sudden cardiac death. HCM is characterized by pronounced hypertrophy of cardiomyocytes, fiber disarray and development of fibrosis and can be divided into a non-obstructive (HNCM) and obstructive form (HOCM) therefore requiring personalized therapeutic therapies. In the present study, we investigated the expression patterns of several circulating circular RNAs (circRNAs) as potential biomarkers in patients with HCM. We included 64 patients with HCM and 53 healthy controls to the study and quantitatively measured the expression of a set of circRNAs already known to be associated with cardiac diseases (circDNAJC6) and/or being highly abundant in blood (circTMEM56 and circMBOAT2). Abundancy of circRNAs was then correlated to relevant clinical parameters. Serum expression levels of circRNAs DNAJC6, TMEM56 and MBOAT2 were downregulated in patients with HCM. The inverse association between circRNA levels and HCM remained unchanged even after adjusting for confounding factors. All circRNAs, evaluated separately or in combination, showed a robust discrimination capacity when comparing control subjects with HCM, HNCM or HOCM patients (AUC from 0.722 to 0.949). Two circRNAs, circTMEM56 and circDNAJC6, significantly negatively correlated with echocardiographic parameters for HOCM. Collectively, circulating circRNAs DNAJC6, TMEM56 and MBOAT2 can distinguish between healthy and HCM patients. In addition, circTMEM56 and circDNAJC6 could serve as indicators of disease severity in patients with HOCM. Thus, circRNAs emerge as novel biomarkers for HCM facilitating the clinical decision making in a personalized manner.
Optimized nitrogen management enhances lodging resistance of rice and its morpho-anatomical, mechanical, and molecular mechanisms
Authors: Pan Junfeng , Zhao Junliang , Liu Yanzhuo , Huang Nongrong , Tian Ka , Shah Farooq , Liang Kaiming , Zhong Xuhua , Liu Bin 
Published: December 2019

AbstractIncreasing evidence shows that improved nitrogen management can enhance lodging resistance and lower internodes play a key role in the lodging resistance of rice. However, little is known about the cellular and molecular mechanisms underlying the enhanced lodging resistance under improved nitrogen management. In the present study, two rice varieties, with contrasting lodging resistance, were grown under optimized N management (OPT) and farmers’ fertilizer practices. Under OPT, the lower internodes of both cultivars were shorter but the upper internodes were longer, while both culm diameter and wall thickness of lower internodes were dramatically increased. Microscopic examination showed that the culm wall of lower internodes under OPT contained more sclerenchyma cells beneath epidermis and vascular bundle sheath. The genome-wide gene expression profiling revealed that transcription of genes encoding cell wall loosening factors was down-regulated while transcription of genes participating in lignin and starch synthesis was up-regulated under OPT, resulting in inhibition of longitudinal growth, promotion in transverse growth of lower internodes and enhancement of lodging resistance. This is the first comprehensive report on the morpho-anatomical, mechanical, and molecular mechanisms of lodging resistance of rice under optimized N management.
Serotonin transporter deficiency alters socioemotional ultrasonic communication in rats
Authors: Golebiowska Joanna , Hołuj Małgorzata , Potasiewicz Agnieszka , Piotrowska Diana , Kuziak Agata , Popik Piotr , Homberg Judith R. , Nikiforuk Agnieszka 
Published: December 2019

AbstractIt has been widely established that serotonin plays important role in the regulation of emotional and social behaviour. Rodents with a genetic deletion of the serotonin reuptake transporter (SERT) are used as a model to study lifelong consequences of increased extracellular 5‐HT levels due to its impaired reuptake. SERT knock-out (SERT-KO) mice and rats consistently showed anxiety-like symptoms and social deficits. Nevertheless, the impact of SERT deletion on socioemotional ultrasonic communication has not been addressed. Here we investigated the impact of lifelong serotonin abundance on ultrasonic vocalisation accompanying social interactions and open field exploration in rats. SERT-KO rats displayed reduced overall duration of social contacts, but increased time spent on following the conspecific. The altered pattern of social behaviour in SERT-KO rats was accompanied by the structural changes in ultrasonic vocalisations, as they differed from their controls in distribution of call categories. Moreover, SERT deletion resulted in anxiety-like behaviours assessed in the open field test. Their anxious phenotype resulted in a lower tendency to emit appetitive 50-kHz calls during novelty exploration. The present study demonstrates that genetic deletion of SERT not only leads to the deficits in social interaction and increased anxiety but also affects ultrasonic communication.
Health-promoting phytochemicals and antioxidant capacity in different organs from six varieties of Chinese kale
Authors: Chang Jiaqi , Wang Mengyu , Jian Yue , Zhang Fen , Zhu Jun , Wang Qiaomei , Sun Bo 
Published: December 2019

AbstractChinese kale (Brassica oleracea var. alboglabra) has high nutritional value. This study investigated the contents of glucosinolates, antioxidants (chlorophylls, carotenoids, vitamin C, and total phenolics), and antioxidant capacity in five organs from six varieties of Chinese kale. The highest concentrations of individual and total glucosinolates were in the roots and inflorescences, respectively. The highest levels of antioxidants and antioxidant capacity were in inflorescences and leaves. Plant organs played a predominant role in glucosinolate and antioxidant accumulation. Glucoiberin, glucoraphanin, and glucobrassicin, the main anticarcinogenic glucosinolates, could be enhanced simultaneously because of their high positive correlations. The relationship between glucosinolates and antioxidant capacity indicated that glucobrassicin might contribute to the total antioxidant capacity. These results provide useful information related to consumption, breeding of functional varieties, and use of the non-edible organs of Chinese kale.