bluuebunny/crossref_metadata_2025_split huggingface dataset:
Ammoniotinsleyite, (NH4)Al2(PO4)2(OH)⋅2H2O, a new mineral species from the guano deposit at Pabellón de Pica, Iquique Province, Chile
Authors: Chukanov Nikita V. , Möhn Gerhard , Pekov Igor V. , Zubkova Natalia V. , Ksenofontov Dmitry A. , Belakovskiy Dmitry I. , Vozchikova Svetlana A. , Britvin Sergey N. , Desor Joy 
Published: June 2020

AbstractThe new leucophosphite-group mineral ammoniotinsleyite is found in a guano deposit located on the Pabellón de Pica Mountain, Iquique Province, Tarapacá Region, Chile. Associated minerals are halite, gypsum, salammoniac and clay minerals. Ammoniotinsleyite occurs as pink to pale violet globular aggregates up to 3 mm across with individual single crystals ~10–15 μm. The mineral is brittle. Its Mohs hardness is 4. Dmeas. = 2.42(2) g cm–3 and Dcalc. = 2.451 g cm–3. The IR spectrum shows the presence of NH4+ and PO43– groups and H2O molecules. Ammoniotinsleyite is optically biaxial (+), α = 1.557(2), β = 1.559 (calc.), γ = 1.563(2) (λ = 589 nm); and 2Vmeas. = 75(10)°. The chemical composition (K, Mg, Ca, Al, Fe and P from electron-microprobe data; H, C and N measured by gas chromatography on products of ignition at 1200°C; wt.%) is: (NH4)2O 7.25, K2O 1.50, MgO 0.42, CaO 0.34, Al2O3 29.91, Fe2O3 2.36, P2O5 43.97, H2O 14.89, CO2 below detection limit, total 100.64. The empirical formula is [(NH4)0.88K0.10Ca0.02)]Σ1.00(Al1.86Fe3+0.09Mg0.03)Σ1.98(PO4)1.96(OH)1.05⋅2.11H2O. The idealised formula is (NH4)2Al2(PO4)2(OH)⋅2H2O. The crystal structure of ammoniotinsleyite was refined based on powder X-ray diffraction data, using the Rietveld method. The final agreement factors are: Rp = 0.0071, Rwp = 0.0093 and Robs = 0.0167. The new mineral is isostructural with tinsleyite, spheniscidite and leucophosphite. It is monoclinic, space group P21/n, a = 9.5871(1) Å, b = 9.6089(1) Å, c = 9.6467(2) Å, β = 103.4461(8)°, V = 864.31(2) Å3 and Z = 4. The strongest reflections of the powder X-ray diffraction pattern [d,Å(I,%)(hkl)] are: 7.56(23)($\bar{1}$01), 6.71(79)(011, 110), 5.947(100)(101, $\bar{1}$11), 4.676(36)(002, 200), 3.032(28)($\bar{1}$13, 031, 130), 2.958(25)($\bar{2}$22, 310, $\bar{1}$31) and 2.635(29)($\bar{2}$31).
Multilevel Resistive Switching Memory Based on a CH3NH3PbI 3−xClx Film with Potassium Chloride Additives
Authors: Lv Fengzhen , Ling Kang , Zhong Tingting , Liu Fuchi , Liang Xiaoguang , Zhu Changming , Liu Jun , Kong Wenjie 
Published: June 2020

AbstractHigh-quality CH3NH3PbI3−xClx(MAPIC) films were prepared using potassium chloride (KCl) as an additive on indium tin oxide (ITO)-coated glass substrates using a simple one-step and low-temperature solution reaction. The Au/KCl-MAPIC/ITO/glass devices exhibited obvious multilevel resistive switching behavior, moderate endurance, and good retention performance. Electrical conduction analysis indicated that the resistive switching behavior of the KCl-doped MAPIC films was primarily attributed to the trap-controlled space-charge-limited current conduction that was caused by the iodine vacancies in the films. Moreover, the modulations of the barrier in the Au/KCl-MAPIC interface under bias voltages were thought to be responsible for the resistive switching in the carrier injection trapping/detrapping process.
Can presepsin uniformly respond to various pathogens? - an in vitro assay of new sepsis marker -
Authors: Koizumi Yusuke , Sakanashi Daisuke , Mohri Tetsuo , Watanabe Hiroki , Shiota Arufumi , Asai Nobuhiro , Kato Hideo , Hagihara Mao , Murotani Kenta , Yamagishi Yuka , Suematsu Hiroyuki , Mikamo Hiroshige 
Published: June 2020

Abstract
Background
Presepsin (soluble CD14 subtype) is a novel biomarker of sepsis used for early diagnosis. Originally, CD14 is known as the pattern recognition receptor for the lipopolysaccharide (LPS)/LBP complexes, and the diagnostic value of this molecule for gram-positive bacteria, which contain less amount of LPS, is uncertain. To confirm its effectiveness in the diagnosis of bacteremia caused by gram positive bacteria, and to evaluate the interspecies difference of presepsin production against various bacterial strains, we conducted an in vitro assay to evaluate presepsin levels in response to five Gram negative and four Gram positive bacteria.

Results
Whole blood was yielded from five healthy volunteers and co-cultured with bacterial strains at 37 °C for 4 h. Twenty seven clinical isolates of nine species (E. coli, K. pneumoniae, E. cloacae, P. aeruginosa, S. maltophilia, S. aureus, S. pyogenes, B. cereus, and C. striatum) derived from blood cultures of non-neutropenic bacteremia patients were used. Culture supernatants were harvested and presepsin levels were measured. The presepsin level in the gram-negative bacteria 273 (218–352) pg/mL was significantly higher than in the gram-positive bacteria 200 (143–275) pg/mL (p = 0.0002). The presepsin levels were significantly lower in C. striatum, in comparison to other bacteria, and S. pyogenes showed similar results. And the presepsin levels in P. aeruginosa were significantly lower compared to E. cloacae, K. pneumoniae, and S. aureus.

Conclusions
Presepsin production can also be evoked by gram-positive bacteria, and interspecies differences of presepsin response may exist, which should be considered in the diagnosis of sepsis, especially in certain gram-positive bacteremia such as S. pyogenes or C. striatum.
Vital members in the gut microbiotas altered by two probiotic Bifidobacterium strains against liver damage in rats
Authors: Zha Hua , Fang Dai-Qiong , van der Reis Aimee , Chang Kevin , Yang Li-Ya , Xie Jiao-Jiao , Shi Ding , Xu Qiao-Mai , Li Ya-Ting , Li Lan-Juan 
Published: June 2020

Abstract
Background
Probiotics are effective to rectify the imbalanced gut microbiota in the diseased cohorts. Two Bifidobacterium strains (LI09 and LI10) were found to alleviate D-galactosamine-induced liver damage (LD) in rats in our previous work. A series of bioinformatic and statistical analyses were performed to determine the vital bacteria in the gut microbiotas altered by the LI09 or LI10 in rats.

Results
Two groups of representative phylotypes could distinguish the gut microbiotas of LI09 or LI10 groups from the other groups. Among them, OTU170_Porphyromonadaceae acted as a gatekeeper in LI09 group, while OTU12_Bacteroides was determined with multiple correlations in the gut network of LI10 group. Multiple reduced OTUs associated with LC and increased OTUs associated with health were determined in LI09 or LI10 groups, among which, increased OTU51_Barnesiella and reduced OTU99_Barnesiella could be associated with the protective effects of both the two probiotics. The gut microbiotas in LI09, LI10 and positive control groups were clustered into three clusters, i.e., Cluster_1_Microbiota, Cluster_2_Microbiota and Cluster_3_Microbiota, by Partition Around Medoids clustering analysis. Cluster_2_Microbiota was determined at least dysbiotic status due to its greatest LD dysbiosis ratio, lowest levels of liver function variables and plasma cytokines compared with the two other clustered microbiotas, suggesting the treated rats in Cluster_2 were at better health status.

Conclusion
Our findings suggest that OTU170_Porphyromonadaceae and OTU12_Bacteroides are vital in the gut microbiotas altered by LI09 and LI10. Characteristics of the LD cohorts treated by LI09 or LI10 at different gut microbial colonization states could help monitor the cohorts’ health status.
Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study
Authors: Moossavi Shirin , Fehr Kelsey , Derakhshani Hooman , Sbihi Hind , Robertson Bianca , Bode Lars , Brook Jeffrey , Turvey Stuart E. , Moraes Theo J. , Becker Allan B. , Mandhane Piushkumar J. , Sears Malcolm R. , Khafipour Ehsan , Subbarao Padmaja , Azad Meghan B. 
Published: June 2020

AbstractBackgroundFungi constitute an important yet frequently neglected component of the human microbiota with a possible role in health and disease. Fungi and bacteria colonise the infant gastrointestinal tract in parallel, yet most infant microbiome studies have ignored fungi. Milk is a source of diverse and viable bacteria, but few studies have assessed the diversity of fungi in human milk.ResultsHere we profiled mycobiota in milk from 271 mothers in the CHILD birth cohort and detected fungi in 58 (21.4%). Samples containing detectable fungi were dominated byCandida,Alternaria, andRhodotorula, and had lower concentrations of two human milk oligosaccharides (disialyllacto-N-tetraose and lacto-N-hexaose). The presence of milk fungi was associated with multiple outdoor environmental features (city, population density, and season), maternal atopy, and early-life antibiotic exposure. In addition, despite a strong positive correlation between bacterial and fungal richness, there was a co-exclusion pattern between the most abundant fungus (Candida) and most of the core bacterial genera.ConclusionWe profiled human milk mycobiota in a well-characterised cohort of mother-infant dyads and provide evidence of possible host-environment interactions in fungal inoculation. Further research is required to establish the role of breastfeeding in delivering fungi to the developing infant, and to assess the health impact of the milk microbiota in its entirety, including both bacterial and fungal components.
Changes in soil microbial communities at Jinsha earthen site are associated with earthen site deterioration
Authors: Li Jing , Zhang Xiaoyue , Xiao Lin , Liu Ke , Li Yue , Zhang Ziwei , Chen Qiang , Ao Xiaolin , Liao Decong , Gu Yunfu , Ma Menggen , Yu Xiumei , Xiang Quanju , Chen Ji , Zhang Xiaoping , Yang Tao , Penttinen Petri , Zhao Ke 
Published: June 2020

AbstractBackgroundEarthen sites are immobile cultural relics and an important part of cultural heritage with historical, artistic and scientific values. The deterioration of features in earthen sites result in permanent loss of cultural information, causing immeasurable damage to the study of history and culture. Most research on the deterioration of earthen sites has concentrated on physicochemical factors, and information on microbial communities in earthen sites and their relationship with the earthen site deterioration is scarce. We used high-throughput sequencing to analyze bacterial and fungal communities in soils from earthen walls with different degree of deterioration at Jinsha earthen site to characterize the microbial communities and their correlation with environmental factors, and to compare microbial community structures and the relative abundances of individual taxa associated with different degree of deterioration for identifying possible marker taxa.ResultsThe relative abundances of Proteobacteria and Firmicutes were higher and that of Actinobacteria lower with higher degree of deterioration. At the genus level, the relative abundances ofRubrobacterwere highest in all sample groups except in the most deteriorated samples where that ofBacteroideswas highest. The relative abundance of the yeast genusCandidawas highest in the severely deteriorated sample group. The bacterial phylum Bacteroidetes and genusBacteroides, and fungal class Saccharomycetes that includesCandidasp. were specific for the most deteriorated samples. For both bacteria and fungi, the differences in community composition were associated with differences in EC, moisture, pH, and the concentrations of NH4+, K+, Mg2+, Ca2+and SO42−.ConclusionThe microbial communities in soil with different degree of deterioration were distinctly different, and deterioration was accompanied with bigger changes in the bacterial than in the fungal community. In addition, the deteriorated soil contained higher concentrations of soluble salts. Potentially, the accumulation ofBacteroidesandCandidaplays an important role in the deterioration of earthen features. Further work is needed to conclude whether controlling the growth of the bacteria and fungi with high relative abundances in the deteriorated samples can be applied to alleviate deterioration.
The ‘goodness-of-fit’ of fit models: creating a multidimensional survey for person-organisation and person-group fit in health care
Authors: Herkes J. , Ellis L. A. , Churruca K. , Braithwaite J. 
Published: June 2020

Abstract
Background
Person-environment fit, which examines the individual’s perceptions of if, and in what way, he or she is compatible with aspects of the work context, offers a promising conceptual model for understanding employees and their interactions in health care environments. There are numerous potential ways an individual feels they “fit” with their environment. The construct was first noted almost thirty years ago, yet still remains elusive. Feelings of fit with one’s environment are typically measured by surveys, but current surveys encompass only a subset of the different components of fit, which may limit the conclusions drawn. Further, these surveys have rarely been conducted in a focused way in health care settings.

Method
This article describes the development of a multidimensional survey tool to measure fit in relation to the person’s work group (termed person-group (P-G) fit) and their organisation (person-organisation (P-O) fit). The participants were mental health care employees, volunteers, and university interns (n = 213 for P-O fit; n = 194 for P-G fit). Confirmatory Factor Analyses (CFAs) were conducted using LISREL.

Results
Valid and reliable sub-scales were found.

Conclusion
This advanced multidimensional survey tool can be used to measure P-O and P-G fit, and illuminates new information about the theoretical structure of the fit construct.
Identification of novel alternative splicing isoform biomarkers and their association with overall survival in colorectal cancer
Authors: Lian Haifeng , Wang Aili , Shen Yuanyuan , Wang Qian , Zhou Zhenru , Zhang Ranran , Li Kun , Liu Chengxia , Jia Hongtao 
Published: June 2020

AbstractBackgroundAlternative splicing (AS) is an important mechanism of regulating eukaryotic gene expression. Understanding the most common AS events in colorectal cancer (CRC) will help developing diagnostic, prognostic or therapeutic tools in CRC.MethodsPublicly available RNA-seq data of 28 pairs of CRC and normal tissues and 18 pairs of metastatic and normal tissues were used to identify AS events using PSI and DEXSeq methods.ResultThe highly significant splicing events were used to search a database of The Cancer Genome Atlas (TCGA). We identified AS events in 9 genes in CRC (more inclusion of CLK1-E4, COL6A3-E6, CD44v8–10, alternative first exon regulation of ARHGEF9, CHEK1, HKDC1 and HNF4A) or metastasis (decrease of SERPINA1-E1a, CALD-E5b, E6). Except for CHEK1, all other 8 splicing events were confirmed by TCGA data with 382 CRC tumors and 51 normal controls. The combination of three splicing events was used to build a logistic regression model that can predict sample type (CRC or normal) with near perfect performance (AUC = 1). Two splicing events (COL6A3 and HKDC1) were found to be significantly associated with patient overall survival. The AS features of the 9 genes are highly consistent with previous reports and/or relevant to cancer biology.ConclusionsThe significant association of higher expression of the COL6A3 E5-E6 junction and HKDC1 E1-E2 with better overall survival was firstly reported. This study might be of significant value in the future biomarker, prognosis marker and therapeutics development of CRC.
Aetiologies and outcomes of patients with abdominal pain presenting to an emergency department of a tertiary hospital in Tanzania: a prospective cohort study
Authors: Mjema Kilalo M. , Sawe Hendry R. , Kulola Irene , Mohamed Amour S. , Sylvanus Erasto , Mfinanga Juma A. , Weber Ellen J. 
Published: June 2020

Abstract
Background
Abdominal pain in adults represents a wide range of illnesses, often warranting immediate intervention. This study is to fill the gap in the knowledge about incidence, presentation, causes and mortality from abdominal pain in an established emergency department of a tertiary hospital in Tanzania.

Methods
This was a prospective cohort study of adult (age ≥ 18 years) patients presenting to the Emergency Medicine Department of Muhimbili National Hospital (EMD-MNH) in Dar Es Salaam, Tanzania with non-traumatic abdominal pain from September 2017 to October 2017. A case report form was used to record data on demographics, clinical presentation, management, diagnosis, outcomes and patient follow-up. The primary outcome of mortality was summarized using descriptive statistics; secondary outcome was, risks for mortality.

Results
Among 3381 adult patients present during the study period, 288 (8.5%) presented with abdominal pain, and of these 199 (69%) patients were enrolled in our study. Median age was 47 years (IQR 35–60 years), 126 (63%) were female, and 118 (59%) were referred from another hospital. Most common final diagnoses were malignancies 71 (36%), intestinal obstruction 11 (6%) and peptic ulcer disease 9 (5%). Most common EMD interventions given were intravenous fluids 57 (21%), analgesia 49 (25%) and antibiotics 40 (20%). 160 (80%) were admitted of which 15 (8%) underwent surgery directly from EMD. 24-h and 7-day mortality were 4 (2%) and 7 (4%) respectively, while overall in hospital-mortality was 16 (8%). Among the risk factors for mortality were male sex Relative Risk (RR) 2.88 (p = 0.03), hypoglycemia (RR) 5.7 (p = 0.004), ICU admission (RR) 14 (p < 0.0001), receipt of IV fluids (RR) 3.2 (p = 0.0151) and need for surgery (RR) 6.6 (p = 0.0001).

Conclusion
Abdominal pain was associated with significant morbidity and mortality as evidenced by a very high admission rate, need for surgical intervention and a high in-hospital mortality rate. Future studies and quality improvement efforts should focus on identifying why such differences exist and how to reduce the mortality.
Comparing the case-mix of frail older people at home and of those being admitted into residential care: a longitudinal study
Authors: de Almeida Mello Johanna , Cès Sophie , Vanneste Dirk , Van Durme Thérèse , Van Audenhove Chantal , Macq Jean , Fries Brant , Declercq Anja 
Published: June 2020

AbstractBackgroundIn order to optimize interventions and services in the community, it is important to identify the profile of persons who are able to stay at home and of those who are being admitted into residential care. Understanding their needs and their use of resources is essential. The main objective of the study is to identify persons who are likely to enter residential care based upon their needs and resource utilization, so that care providers can plan interventions effectively and optimize services and resources to meet the persons’ needs.MethodsThis is a longitudinal quasi-experimental study. The data consists of primary data from the community setting collected every six months during the period of 2010–2016. Interventions had the goal of keeping older people longer at home. Participants were at least 65 years old and were living in the community. The interRAI Resource Utilization Group system (RUG-III) was used to calculate the case-mix indexes (CMI) of all participants. Comparisons were made between the case-mix of those who were still living at home and those who were admitted into residential care at follow-up.ResultsA total of 10,289 older persons participated in the study (81.2 ± 7.1 yrs., 69.1% female). From this population, 853 participants (8.3%) were admitted into residential care. The CMI of the persons receiving night care at home were the highest (1.6 at baseline and 1.7 at the entry point of residential care), followed by persons receiving occupational therapy (1.5 at baseline and 1.6 at the entry point of residential care) and persons enrolled in case management interventions with rehabilitation (1.4 at baseline and 1.6 at the entry point of residential care). The CMIs at follow-up were significantly higher than at baseline and the linear regression model showed that admission to residential care was a significant factor in the model.ConclusionsThe study showed that the RUG-III system offers possibilities for identifying persons at risk of institutionalization. Interventions designed to avoid early nursing home admission can make use of the RUG-III system to optimize care planning and the allocation of services and resources. Based on the RUG-III case-mix, resources can be allocated to keep older persons at home longer, bearing in mind the complexity of care and the availability of services in the community.
The gut microbiota profile of adults with kidney disease and kidney stones: a systematic review of the literature
Authors: Stanford Jordan , Charlton Karen , Stefoska-Needham Anita , Ibrahim Rukayat , Lambert Kelly 
Published: June 2020

Abstract
Background
There is mounting evidence that individuals with kidney disease and kidney stones have an abnormal gut microbiota composition. No studies to date have summarised the evidence to categorise how the gut microbiota profile of these individuals may differ from controls. Synthesis of this evidence is essential to inform future clinical trials. This systematic review aims to characterise differences of the gut microbial community in adults with kidney disease and kidney stones, as well as to describe the functional capacity of the gut microbiota and reporting of diet as a confounder in these studies.

Methods
Included studies were those that investigated the gut microbial community in adults with kidney disease or kidney stones and compared this to the profile of controls. Six scientific databases (CINHAL, Medline, PubMed, Scopus, Web of Science and Cochrane Library), as well as selected grey literature sources, were searched. Quality assessment was undertaken independently by three authors. The system of evidence level criteria was employed to quantitatively evaluate the alteration of microbiota by strictly considering the number, methodological quality and consistency of the findings. Additional findings relating to altered functions of the gut microbiota, dietary intakes and dietary methodologies used were qualitatively summarised.

Results
Twenty-five articles met the eligibility criteria and included data from a total of 892 adults with kidney disease or kidney stones and 1400 controls. Compared to controls, adults with kidney disease had increased abundances of several microbes including Enterobacteriaceae, Streptococcaceae, Streptococcus and decreased abundances of Prevotellaceae, Prevotella, Prevotella 9 and Roseburia among other taxa. Adults with kidney stones also had an altered microbial composition with variations to Bacteroides, Lachnospiraceae NK4A136 group, Ruminiclostridium 5 group, Dorea, Enterobacter, Christensenellaceae and its genus Christensenellaceae R7 group. Differences in the functional potential of the microbial community between controls and adults with kidney disease or kidney stones were also identified. Only three of the 25 articles presented dietary data, and of these studies, only two used a valid dietary assessment method.

Conclusions
The gut microbiota profile of adults with kidney disease and kidney stones differs from controls. Future study designs should include adequate reporting of important confounders such as dietary intake to assist with interpretation of findings.