bluuebunny/crossref_metadata_2025_split huggingface dataset:
Alveolar bone repair of rhesus monkeys by using BMP-2 gene and mesenchymal stem cells loaded three-dimensional printed bioglass scaffold
Authors: Wang Liyan , Xu Weikang , Chen Yang , Wang Jingjing 
Published: December 2019

AbstractOver the past years, the study about bone tissue engineering in the field of regenerative medicine has been a main research topic. Using three-dimensional (3D) porous degradable scaffold complexed with mesenchymal stem cells (MSCs) and growth factor gene to improve bone tissue repair and regeneration has raised much interest. This study mainly evaluated the osteogenesis of alveolar bone defects of animal in the following experimental groups: sham-operated (SO), 3D printed bioglass (3D-BG), 3D-BG with BMP-2 gene loaded CS (3D-BG + BMP/CS) and 3D-BG with rhesus marrow bone MSCs and BMP/CS (3D-BG + BMP/CS + rBMSCs). Simulated human bone defect with critical size of 10 × 10 × 5 mm were established in quadrumana - rhesus monkeys, and in vivo osteogenesis was characterized by X-ray, micro-Computed Tomography (mCT) and history. Our results revealed that 3D-BG + rBMSCs + BMP/CS scaffold could improve bone healing best by showing its promote osteogenic properties in vivo. Considering the great bone repair capacity of 3D-BG + BMP/CS + rBMSCs in humanoid primate rhesus monkeys, it could be a promising therapeutic strategy for surgery trauma or accidents, especially for alveolar bones defects.
Snowfall Variability Dictates Glacier Mass Balance Variability in Himalaya-Karakoram
Authors: Kumar Pankaj , Saharwardi Md. Saquib , Banerjee Argha , Azam Mohd. Farooq , Dubey Aditya Kumar , Murtugudde Raghu 
Published: December 2019

AbstractGlaciers in the Himalaya-Karakoram (HK) are critical for ensuring water-security of a large fraction of world’s population that is vulnerable to climate impacts. However, the sensitivity of HK glaciers to changes in meteorological forcing remains largely unknown. We analyzed modelled interannual variability of mass balance (MB) that is validated against available observations, to quantify the sensitivity of MB to meteorological factors over the HK. Within the model, snowfall variability (0.06 m/yr) explains ~60% of the MB variability (0.28 m/yr), implying a sensitivity of MB on snowfall to the tune of several hundreds of percent. This stunningly high sensitivity of MB to snowfall offers crucial insights into the mechanism of the recent divergent glacier response over the HK. Our findings underscore the need for sustained measurements and model representations of the spatiotemporal variability of snowfall, one of the least-studied factors over the glacierized HK, for capturing the large-scale and yet region-specific glacier changes taking place over the HK.
Schinus terebinthifolia leaf lectin (SteLL) has anti-infective action and modulates the response of Staphylococcus aureus-infected macrophages
Authors: de Souza Feitosa Lima Isana Maria , Zagmignan Adrielle , Santos Deivid Martins , Maia Hermerson Sousa , dos Santos Silva Lucas , da Silva Cutrim Brenda , Vieira Silvamara Leite , Bezerra Filho Clovis Macêdo , de Sousa Eduardo Martins , Napoleão Thiago Henrique , Krogfelt Karen Angeliki , Løbner-Olesen Anders , Paiva Patrícia Maria Guedes , Nascimento da Silva Luís Cláudio 
Published: December 2019

AbstractStaphylococcus aureus is recognized as an important pathogen causing a wide spectrum of diseases. Here we examined the antimicrobial effects of the lectin isolated from leaves of Schinus terebinthifolia Raddi (SteLL) against S. aureus using in vitro assays and an infection model based on Galleria mellonella larvae. The actions of SteLL on mice macrophages and S. aureus-infected macrophages were also evaluated. SteLL at 16 µg/mL (8 × MIC) increased cell mass and DNA content of S. aureus in relation to untreated bacteria, suggesting that SteLL impairs cell division. Unlike ciprofloxacin, SteLL did not induce the expression of recA, crucial for DNA repair through SOS response. The antimicrobial action of SteLL was partially inhibited by 50 mM N-acetylglucosamine. SteLL reduced staphyloxathin production and increased ciprofloxacin activity towards S. aureus. This lectin also improved the survival of G. mellonella larvae infected with S. aureus. Furthermore, SteLL induced the release of cytokines (IL-6, IL-10, IL-17A, and TNF-α), nitric oxide and superoxide anion by macrophagens. The lectin improved the bactericidal action of macrophages towards S. aureus; while the expression of IL-17A and IFN-γ was downregulated in infected macrophages. These evidences suggest SteLL as important lead molecule in the development of anti-infective agents against S. aureus.
The myopia susceptibility locus vasoactive intestinal peptide receptor 2 (VIPR2) contains variants with opposite effects
Authors: Leung Kim Hung , Luo Shumeng , Kwarteng Regina , Chen Sin-Guang , Yap Maurice K. H. , Huang Chien-Ling , Yip Shea Ping 
Published: December 2019

AbstractMyopia is the commonest eye disorder in the world. High myopes are predisposed to ocular pathologies. The vasoactive intestinal peptide receptor 2 (VIPR2) gene was identified as a myopia susceptibility locus by our group and another group. We continued to fine-map this locus. A case-control study was performed in 4 sequential stages with a total of 941 highly myopic subjects and 846 control subjects, all unrelated Chinese. Stage 1 experimentally genotyped 64.4% of the entire cohort for 152 single-nucleotide polymorphisms (SNPs) and Stage 2 the remaining subjects for 21 SNPs. Stage 3 combined the genotypes for 21 SNPs for the entire cohort, and identified one group of high-risk haplotypes and one group of protective haplotypes significantly associated with high myopia. Stage 4 imputed genotypes for variants in theVIPR2region and identified two independent groups of variants: one group with high-risk minor alleles and another with protective minor alleles. Variants within each group were generally in strong linkage disequilibrium among themselves while high-risk variants were in linkageequilibriumwith protective variants. Therefore, theVIPR2locus seems to contain variants with opposite effects. This is the first study that has examined the genetic architecture of a myopia susceptibility locus in detail.
Mitogenomics suggests a sister relationship of Relicanthus daphneae (Cnidaria: Anthozoa: Hexacorallia: incerti ordinis) with Actiniaria
Authors: Xiao Madelyne , Brugler Mercer R. , Broe Michael B. , Gusmão Luciana C. , Daly Marymegan , Rodríguez Estefanía 
Published: December 2019

AbstractRelicanthus daphneae (formerly Boloceroides daphneae) was first described in 2006 as a giant sea anemone based on morphology. In 2014, its classification was challenged based on molecular data: using five genes, Relicanthus was resolved sister to zoanthideans, but with mixed support. To better understand the evolutionary relationship of Relicanthus with other early-branching metazoans, we present 15 newly-sequenced sea anemone mitochondrial genomes and a mitogenome-based phylogeny including all major cnidarian groups, sponges, and placozoans. Our phylogenetic reconstruction reveals a moderately supported sister relationship between Relicanthus and the Actiniaria. Morphologically, the cnidae of Relicanthus has apical flaps, the only existing synapomorphy for sea anemones. Based on both molecular and morphological results, we propose a third suborder (Helenmonae) within the Actiniaria to accommodate Relicanthus. Although Relicanthus shares the same gene order and content with other available actiniarian mitogenomes, it is clearly distinct at the nucleotide level from anemones within the existing suborders. The phylogenetic position of Relicanthus could reflect its association with the periphery of isolated hydrothermal vents, which, although patchy and ephemeral, harbor unique chemosynthetic communities that provide a relatively stable food source to higher trophic levels over long evolutionary timescales. The ability to colonize the deep sea and the periphery of new vent systems may be facilitated by Relicanthus’ large and extremely yolky eggs.
Eco-friendly and biodegradable cellulose hydrogels produced from low cost okara: towards non-toxic flexible electronics
Authors: Cui Xi , Lee Jaslyn J. L. , Chen Wei Ning 
Published: December 2019

AbstractWith increasing resource shortage and environmental pollution, it is preferable to utilize materials which are sustainable and biodegradable. Side-streams products generated from the food processing industry is one potential avenue that can be used in a wide range of applications. In this study, the food by-product okara was effectively reused for the extraction of cellulose. Then, the okara cellulose was further employed to fabricate cellulose hydrogels with favorable mechanical properties, biodegrablability, and non-cytotoxicity. The results showed that it could be biodegraded in soil within 28 days, and showed no cytotoxicity on NIH3T3 cells. As a proof of concept, a demostration of wearable and biocompatible strain sensor was achieved, which allowed a good and stable detection of human body movement behaviors. The okara-based hydrogels could provide an alternative platform for further physical and/or chemical modification towards tissue engineering, medical supplies, or smart biomimetic soft materials.
Participation of 5-lipoxygenase and LTB4 in liver regeneration after partial hepatectomy
Authors: Lorenzetti Florencia , Vera Marina Cecilia , Ceballos María Paula , Ronco María Teresa , Pisani Gerardo Bruno , Monti Juan Alberto , Lucci Alvaro , Comanzo Carla Gabriela , Tordjmann Thierry , Carrillo María Cristina , Quiroga Ariel Darío , Alvarez María de Luján 
Published: December 2019

AbstractRegeneration is the unmatched liver ability for recovering its functional mass after tissue lost. Leukotrienes (LT) are a family of eicosanoids with the capacity of signaling to promote proliferation. We analyzed the impact of blocking LT synthesis during liver regeneration after partial hepatectomy (PH). Male Wistar rats were subjected to two-third PH and treated with zileuton, a specific inhibitor of 5-lipoxygenase (5-LOX). Our first find was a significant increment of intrahepatic LTB4 during the first hour after PH together with an increase in 5-LOX expression. Zileuton reduced hepatic LTB4 levels at the moment of hepatectomy and also inhibited the increase in hepatic LTB4. This inhibition produced a delay in liver proliferation as seen by decreased PCNA and cyclin D1 nuclear expression 24 h post-PH. Results also showed that hepatic LTB4 diminution by zileuton was associated with a decrease in NF-ĸB activity. Additionally, decreased hepatic LTB4 levels by zileuton affected the recruitment of neutrophils and macrophages. Non-parenchymal cells (NPCs) from zileuton-treated PH-rats displayed higher apoptosis than NPCs from PH control rats. In conclusion, the present work provides evidences that 5-LOX activation and its product LTB4 are involved in the initial signaling events for liver regeneration after PH and the pharmacological inhibition of this enzyme can delay the initial time course of the phenomenon.
Anomalous Stranski-Krastanov growth of (111)-oriented quantum dots with tunable wetting layer thickness
Authors: Schuck Christopher F. , Roy Simon K. , Garrett Trent , Yuan Qing , Wang Ying , Cabrera Carlos I. , Grossklaus Kevin A. , Vandervelde Thomas E. , Liang Baolai , Simmonds Paul J. 
Published: December 2019

AbstractDriven by tensile strain, GaAs quantum dots (QDs) self-assemble on In0.52Al0.48As(111)A surfaces lattice-matched to InP substrates. In this study, we show that the tensile-strained self-assembly process for these GaAs(111)A QDs unexpectedly deviates from the well-known Stranski-Krastanov (SK) growth mode. Traditionally, QDs formed via the SK growth mode form on top of a flat wetting layer (WL) whose thickness is fixed. The inability to tune WL thickness has inhibited researchers’ attempts to fully control QD-WL interactions in these hybrid 0D-2D quantum systems. In contrast, using microscopy, spectroscopy, and computational modeling, we demonstrate that for GaAs(111)A QDs, we can continually increase WL thickness with increasing GaAs deposition, even after the tensile-strained QDs (TSQDs) have begun to form. This anomalous SK behavior enables simultaneous tuning of both TSQD size and WL thickness. No such departure from the canonical SK growth regime has been reported previously. As such, we can now modify QD-WL interactions, with future benefits that include more precise control of TSQD band structure for infrared optoelectronics and quantum optics applications.
Deciphering the metabolic capabilities of Bifidobacteria using genome-scale metabolic models
Authors: Devika N. T. , Raman Karthik 
Published: December 2019

AbstractBifidobacteria, the initial colonisers of breastfed infant guts, are considered as the key commensals that promote a healthy gastrointestinal tract. However, little is known about the key metabolic differences between different strains of these bifidobacteria, and consequently, their suitability for their varied commercial applications. In this context, the present study applies a constraint-based modelling approach to differentiate between 36 important bifidobacterial strains, enhancing their genome-scale metabolic models obtained from the AGORA (Assembly of Gut Organisms through Reconstruction and Analysis) resource. By studying various growth and metabolic capabilities in these enhanced genome-scale models across 30 different nutrient environments, we classified the bifidobacteria into three specific groups. We also studied the ability of the different strains to produce short-chain fatty acids, finding that acetate production is niche- and strain-specific, unlike lactate. Further, we captured the role of critical enzymes from the bifid shunt pathway, which was found to be essential for a subset of bifidobacterial strains. Our findings underline the significance of analysing metabolic capabilities as a powerful approach to explore distinct properties of the gut microbiome. Overall, our study presents several insights into the nutritional lifestyles of bifidobacteria and could potentially be leveraged to design species/strain-specific probiotics or prebiotics.
Full-Length Transcriptome Survey and Expression Analysis of Parasitoid Wasp Chouioia cunea upon Exposure to 1-Dodecene
Authors: Pan Lina , Guo Meiqi , Jin Xin , Sun Zeyang , Jiang Hao , Han Jiayi , Wang Yonghui , Yan Chuncai , Li Min 
Published: December 2019

AbstractChouioia cunea (Yang) is an endoparasitic wasp which parasitizes pupae and thus plays an important role in the biological control of the fall webworm (Hyphantria cunea Drury), an important quarantine pest in the entire world and a major invasive pest in China. For the purposes of investigating which proteins are involved in the response of C. cunea to 1-Docecene, one of the chemical compounds of pupae of H. cunea with a significant attracting action to mated female C. cunea, 11.5 Gb transcriptome data was sequenced on the PacBio RS II platform from 1-day old C. cunea adults to generate a reference assembly. Afterwards, 46.88 Gb of clean RNA-Seq data were obtained to assess the transcriptional response of these insects before and after the stimulation with 1-Docecene. After removing redundancy using CD-HIT, a sequence structure analysis predicted 29,105 complete coding sequence (CDS) regions, 51,458 single-sequence repeats (SSRs), and 2,375 long non-coding RNAs. Based on the early transcriptome sequencing in our laboratory, we revealed some new sequences corresponding to chemosensory genes such as odorant binding proteins (OBPs), odorant receptor (OR), gustatory receptors(GRs). Results of quantitative real-time PCR experiments revealed that CcOBP7, CcOBP18, CcCSP4, CcOR2, and CcGR18 were up-regulated after 1-Dodecene stimulation. In addition, the expression of 31 genes, including 1 gene related to phospholipid biosynthesis and 2 genes related to transmembrane transport were up-regulated after 1-Dodecene stimulation; meanwhile, the expression of 22 genes, including 5 genes related to protein phosphorylation and protein serine/threonine kinase activity were significantly down-regulated after 1-Dodecene stimulation. These results suggest that the attraction of adult C. cunea to 1-dodecane is associated with the transmembrane signal transduction and dephosphorylation of some proteins. Our findings will provide useful targets for further studies on the molecular mechanism of host recognition in C. cunea.
A new bioluminescence-based tool for modulating target proteins in live cells
Authors: Ishimoto Tetsuya , Mori Hisashi 
Published: December 2019

AbstractWe have developed a new genetically encoded tool designed to generate reactive oxygen species (ROS) at target proteins in cultured cells; it is designed using firefly luciferase and photosensitiser protein KillerRed. Targeting this fusion protein, KillerFirefly, to F-actin in live cells and treatment with luciferin induced a characteristic structure, previously reported as a cofilin-actin rod, which is seen in patients with Alzheimer’s disease. This structural change is considered to be elicited by the consistent generation of very low-level ROS by KillerFirefly in the vicinity of F-actin. Moreover, our results suggest the presence of an actin-regulating system, controlled by very low levels of endogenously generated ROS.
Population genomics of two congeneric Palaearctic shorebirds reveals differential impacts of Quaternary climate oscillations across habitats types
Authors: Tan Hui Zhen , Ng Elize Ying Xin , Tang Qian , Allport Gary A. , Jansen Justin J. F. J. , Tomkovich Pavel S. , Rheindt Frank E. 
Published: December 2019

AbstractIntracontinental biotic divisions across the vast Palaearctic region are not well-characterized. Past research has revealed patterns ranging from a lack of population structure to deep divergences along varied lines of separation. Here we compared biogeographic patterns of two Palaearctic shorebirds with different habitat preferences, Whimbrel (Numenius phaeopus) and Eurasian curlew (N. arquata). Using genome-wide markers from populations across the Palaearctic, we applied a multitude of population genomic and phylogenomic approaches to elucidate population structure. Most importantly, we tested for isolation by distance and visualized barriers and corridors to gene flow. We found shallow Palaearctic population structure in subpolar bog and tundra-breeding whimbrels, consistent with other species breeding at a similarly high latitude, indicating connectivity across the tundra belt, both presently and during southward shifts in periods of global cooling. In contrast, the temperate grassland-breeding Eurasian curlew emerged in three distinct clades corresponding to glacial refugia. Barriers to gene flow coincided with areas of topographic relief in the central Palaearctic for whimbrels and further east for Eurasian curlews. Our findings highlight the interplay of historic and ecological factors in influencing present-day population structure of Palaearctic biota.
Mechanism study on highly efficient polymer light-emitting diodes utilizing double-layered alkali halide electron injection layer
Authors: Niu Qiaoli , Tong Jing , Duan Xiaomeng , Zhang Haoran , Wang Dexu , Hai Gang , Lv Hao , Zeng Wenjin , Xia Ruidong , Min Yonggang 
Published: December 2019

AbstractEnhancing the injection of electron is an effective strategy to improve the performance of polymer light-emitting diodes (PLEDs). In this work, we reported a 286% improvement in current efficiency (CE) of PLEDs by using double-layered alkali halide electron injection layer (EIL) NaCl/LiF instead of LiF. A significant enhancement of electron injection was observed after inserting the NaCl layer. To understand the mechanism of such improvement, the devices with KBr/LiF and CsF/LiF as EILs were also investigated. Experimental results show that metal cation migrated under the effect of built-in electric field (Vbi), which plays the main role on the improvement of electron injection in PLEDs.
Plasma chemokines are biomarkers of disease severity, higher bacterial burden and delayed sputum culture conversion in pulmonary tuberculosis
Authors: Kumar Nathella P. , Moideen Kadar , Nancy Arul , Viswanathan Vijay , Shruthi Basavaradhya S. , Sivakumar Shanmugam , Natarajan Mohan , Kornfeld Hardy , Babu Subash 
Published: December 2019

AbstractPlasma cytokines are biomarkers of disease extent and mycobacterial burden in pulmonary tuberculosis (PTB). Whether chemokines can perform the same role in PTB is not known. We examined the plasma levels of chemokines in individuals with PTB, latent TB (LTB) or healthy controls (HC) and their association with disease severity and mycobacterial burdens in PTB. We also examined the chemokines in PTB individuals at the end of anti-tuberculous chemotherapy (ATT). PTB individuals exhibited significantly higher levels of CCL1, CCL3, CXCL1, CXCL2, CXCL9 and CXCL10 in comparison to LTB and/or HC individuals. PTB individuals with bilateral or cavitary disease displayed significantly elevated levels of CCL1, CCL3, CXCL1, CXCL10 and CXCL11 compared to those with unilateral or non-cavitary disease and also exhibited a significant positive relationship with bacterial burdens. In addition, PTB individuals with slower culture conversion displayed significantly elevated levels of CCL1, CCL3, CXCL1 and CXCL9 at the time of PTB diagnosis and prior to ATT. Finally, the chemokines were significantly reduced following successful ATT. Our data demonstrate that PTB is associated with elevated levels of chemokines, which are partially reversed followed chemotherapy. Our data demonstrate that chemokines are markers of disease severity, predicting increased bacterial burden and delayed culture conversion in PTB.
Uniform and bright light emission from a 3D organic light-emitting device fabricated on a bi-convex lens by a vortex-flow-assisted solution-coating method
Authors: Park Byoungchoo , Na Seo Yeong , Bae In-Gon 
Published: December 2019

AbstractWe herein present the results of a study on the novel fabrication process of uniform and homogeneous semiconducting polymer layers, in this case hole-injecting and fluorescent light-emitting layers that were produced by a simple solution-coating process for 3D conformal organic light-emitting diodes (3D OLEDs) on curvilinear surfaces. The solution-coating process used was a newly developed method of vortex-flow-assisted solution-coating with the support of spinning of the coating solution. It is shown that the vortex-flow-assisted spin-coating process can produce high-quality thin films at nanoscale thicknesses by controlling the liquid surface of the coating solutions, which can easily be adjusted by changing the spinning speed, even on complex curvilinear surfaces, i.e., a quasi-omnidirectional coating. This excellent film-forming ability without any serious film defects is mainly due to the reduction of line tension among the solution, air, and the substrate at the contact line due to vortex flows of the coating solution on the substrate during the vortex-spin-coating process. As a proof of concept, we present vortex-spin-coated 3D OLEDs fabricated on bi-convex lens substrates which exhibit excellent device performance with high brightness and current efficiency levels comparable to those of a conventional spin-coated 2D planar OLED on a flat substrate. It is also shown that the EL emission from the 3D OLED on the bi-convex lens substrate exhibits a diffusive Lambertian radiation pattern. The results here demonstrate that the vortex-flow-assisted spin-coating process is a promising approach for producing efficient and reliable next-generation OLEDs for 3D conformal opto-electronics.