bluuebunny/crossref_metadata_2025_split huggingface dataset:
Morphofunctional analysis of the retina in patients with type 1 diabetes without complications after 30 years of disease
Authors: Sacconi Riccardo , Lamanna Francesca , Borrelli Enrico , Mulinacci Giacomo , Casaluci Marco , Gelormini Francesco , Carnevali Adriano , Querques Lea , Zerbini Gianpaolo , Bandello Francesco , Querques Giuseppe 
Published: January 2020

AbstractThere is a lack of studies evaluating the sub-clinical retinal changes in patients with long-term type 1 diabetes mellitus (T1DM) and without history of systemic/ocular complications. The aim of this cross-sectional study was to investigate sub-clinical structural and/or vascular retinal changes in patients with long-term (≥30 years) T1DM and without systemic/ocular complications (“happy few” patients) using structural optical coherence tomography (OCT), OCT-angiography and microperimetry. Twelve eyes of 12 consecutive T1DM patients (mean age 52 ± 12 years, mean duration of disease 35 ± 3 years, mean HbA1c level 7.3 ± 2.8%), without micro/macrovascular complications associated with long-standing T1DM, and twelve healthy subjects were consecutively included. No statistically significant differences were disclosed comparing patients and controls for age, sex, best-corrected visual acuity, central macular thickness, and choroidal thickness. Using OCT-angiography, we did not find any significant difference in foveal avascular zone area, perfusion density, vessel length density, and tortuosity. Moreover, no significant differences were disclosed in retinal nerve fiber layer and ganglion cell complex thickness using structural OCT. No differences were disclosed in retinal sensitivity by microperimetry. New diagnostic tools are able to confirm the presence of a particular population of patients with type 1 diabetes who have been completely spared from diabetic retinal complications. The finding of these “happy few” patients could help us to better understand and target future treatments for diabetes.
Exploring the Novel Susceptibility Gene Variants for Primary Open-Angle Glaucoma in East Asian Cohorts: The GLAU-GENDISK Study
Authors: Kim Yong Woo , Kim Yu Jeong , Cheong Hyun Sub , Shiga Yukihiro , Hashimoto Kazuki , Song Yong Ju , Kim Seok Hwan , Choi Hyuk Jin , Nishiguchi Koji M. , Kawai Yosuke , Nagasaki Masao , Nakazawa Toru , Park Ki Ho , Kim Dong Myung , Jeoung Jin Wook 
Published: January 2020

AbstractPrimary open-angle glaucoma (POAG) can develop even within normal ranges of intraocular pressure, and this type of glaucoma (so-called ‘normal-tension glaucoma [NTG]’) is highly prevalent in East Asia including Korea and Japan. We conducted exome chip analysis to identify low-frequency and rare variants associated with POAG from the primary cohort (309 POAG patients and 5,400 control, all Koreans). For replication, Korean (310 POAG patients and 5,612 controls) and Japanese (565 POAG patients and 1,104 controls) cohorts were further investigated by targeted genotyping. SNP rs116121322 in LRRC27 showed nominally significant association with POAG in the discovery cohort (OR = 29.85, P = 2E–06). This SNP was validated in the Korean replication cohort but only in the NTG subgroups (OR = 9.86, P = 0.007). Japanese replication cohort did not show significant association with POAG (P .00.44). However, the meta-analysis in the entire cohort revealed significant association of rs116121322 with POAG (ORcombined = 10.28, Pcombined = 1.4E–07). The LRRC27 protein expression was confirmed from human trabecular meshwork cells. For gene-based testing, METTL20 showed a significant association in POAG (Pcombined = 0.002) and in the subgroup of NTG (Pcombined = 0.02), whereas ZNF677 were significantly associated with only in the subgroup of high-tension glaucoma (Pcombined = 1.5E–06). Our findings may provide further genetic backgrounds into the pathogenesis of POAG, especially for the patients who have lower baseline intraocular pressures.
Surface plasmon enhanced Organic color image sensor with Ag nanoparticles coated with silicon oxynitride
Authors: Heo Sung , Lee Jooho , Lee Gae Hwang , Heo Chul-Joon , Kim Seong Heon , Yun Dong-Jin , Park Jong-Bong , Kim Kihong , Kim Yongsung , Lee Dongwook , Park Gyeong-Su , Cho Hoon Young , Shin Taeho , Yun Sung Young , Kim Sunghan , Jin Yong Wan , Park Kyung-Bae 
Published: January 2020

AbstractAs organic photodetectors with less than 1 μm pixel size are in demand, a new way of enhancing the sensitivity of the photodetectors is required to compensate for its degradation due to the reduction in pixel size. Here, we used Ag nanoparticles coated with SiOxNy as a light-absorbing layer to realize the scale-down of the pixel size without the loss of sensitivity. The surface plasmon resonance appeared at the interface between Ag nanoparticles and SiOxNy. The plasmon resonance endowed the organic photodetector with boosted photon absorption and external quantum efficiency. As the Ag nanoparticles with SiOxNy are easily deposited on ITO/SiO2, it can be adapted into various organic color image sensors. The plasmon-supported organic photodetector is a promising solution for realizing color image sensors with high resolution below 1 μm.
Circulating miR-141 and miR-375 are associated with treatment outcome in metastatic castration resistant prostate cancer
Authors: Zedan A. H. , Osther P. J. S. , Assenholt J. , Madsen J. S. , Hansen T. F. 
Published: January 2020

AbstractMetastatic castration resistant prostate cancer (mCRPC) is associated with high mortality, where monitoring of disease activity is still a major clinical challenge. The role of microRNAs (miRs) has been widely investigated in prostate cancer with both diagnostic and prognostic potential. The aim of this study was to investigate the relationship between circulating miRs and treatment outcome in mCRPC patients. The relative expression of five miRs (miR-93-5p, -125b-1-5p, -141-3p, -221-3p, and miR-375-3p) was investigated in plasma samples from 84 mCRPC patients; 40 patients were treated with docetaxel (DOC cohort) and 44 patients with abiraterone (ABI cohort). Blood was sampled at baseline before treatment start and at radiological progression. The plasma levels of four miRs; miR-93-5p, -141-3p, -221-3p, and miR-375-3p decreased significantly after treatment initiation in patients receiving docetaxel, and for miR-141-3p and miR-375-3p the level increased again at the time of radiological progression. In the patients treated with abiraterone, the plasma level of miR-221-3p likewise decreased significantly after the first treatment cycle. High baseline levels of both miR-141-3p and miR-375-3p were significantly associated with a shorter time to radiological progression in both cohorts. Additionally, high baseline levels of miR-141-3p and miR-221-3p were significantly associated with a shorter overall survival (OS) in the ABI cohort, while high levels of miR-141-3p and miR-375-3p were significantly associated with shorter OS in the DOC cohort. Plasma levels of miR-141-3p and miR-375-3p may predict time to progression in mCRPC patients treated with docetaxel or abiraterone. The clinical impact of these findings is dependent on validation in larger cohorts.
Association of STarT Back Tool and the short form of the Örebro Musculoskeletal Pain Screening Questionnaire with multidimensional risk factors
Authors: Simula Anna Sofia , Ruokolainen Olli , Oura Petteri , Lausmaa Mikko , Holopainen Riikka , Paukkunen Maija , Auvinen Juha , Linton Steven J. , Hill Jonathan C. , Karppinen Jaro 
Published: January 2020

AbstractThe Short form of the Örebro Musculoskeletal Pain Screening Questionnaire (ÖMPSQ-short) and the STarT Back Tool (SBT) have been developed to screen for risk factors for future low back pain (LBP) -related disability and work loss respectively. The aim of this study was to investigate the accordance of the two questionnaires and to evaluate the accumulation of risk factors in the risk groups of both screening tools in a large population-based sample. The study population consisted of 3079 participants of the Northern Finland Birth Cohort 1966 who had reported LBP over the previous 12 months and had SBT and ÖMPSQ-short data. We evaluated the association of depressive and anxiety symptoms (Hopkins symptom check list-25, Generalized anxiety disorder 7 questionnaire, and Beck’s Depression Inventory 21), psychological features (Fear-Avoidance Beliefs Questionnaire), lifestyle characteristics (BMI, smoking, alcohol abuse, physical inactivity) and social factors (education level) with the SBT and ÖMPSQ-short risk groups. The high-risk groups of both questionnaires were associated (p < 0.001) with depressive and anxiety symptoms and fear-avoidance beliefs. In addition, adverse lifestyle factors accumulated in the higher risk groups, especially from the ÖMPSQ-short. Agreement between the two questionnaires was moderate for men and fair for women.
Implementation of Complementary Model using Optimal Combination of Hematological Parameters for Sepsis Screening in Patients with Fever
Authors: Choi Jang-Sik , Trinh Tung X. , Ha Jihye , Yang Mi-Sook , Lee Yangsoon , Kim Yeoung-Eun , Choi Jungsoon , Byun Hyung-Gi , Song Jaewoo , Yoon Tae-Hyun 
Published: January 2020

AbstractThe early detection and timely treatment are the most important factors for improving the outcome of patients with sepsis. Sepsis-related clinical score, such as SIRS, SOFA and LODS, were defined to identify patients with suspected infection and to predict severity and mortality. A few hematological parameters associated with organ dysfunction and infection were included in the score although various clinical pathology parameters (hematology, serum chemistry and plasma coagulation) in blood sample have been found to be associated with outcome in patients with sepsis. The investigation of the parameters facilitates the implementation of a complementary model for screening sepsis to existing sepsis clinical criteria and other laboratory signs. In this study, statistical analysis on the multiple clinical pathology parameters obtained from two groups, patients with sepsis and patients with fever, was performed and the complementary model was elaborated by stepwise parameter selection and machine learning. The complementary model showed statistically better performance (AUC 0.86 vs. 0.74–0.51) than models built up with specific hematology parameters involved in each existing sepsis-related clinical score. Our study presents the complementary model based on the optimal combination of hematological parameters for sepsis screening in patients with fever.
Transcriptional analysis identifies potential biomarkers and molecular regulators in pneumonia and COPD exacerbation
Authors: Bertrams Wilhelm , Griss Kathrin , Han Maria , Seidel Kerstin , Klemmer Andreas , Sittka-Stark Alexandra , Hippenstiel Stefan , Suttorp Norbert , Finkernagel Florian , Wilhelm Jochen , Greulich Timm , Vogelmeier Claus F. , Vera Julio , Schmeck Bernd 
Published: January 2020

AbstractLower respiratory infections, such as community-acquired pneumonia (CAP), and chronic obstructive pulmonary disease (COPD) rank among the most frequent causes of death worldwide. Improved diagnostics and profound pathophysiological insights are urgent clinical needs. In our cohort, we analysed transcriptional networks of peripheral blood mononuclear cells (PBMCs) to identify central regulators and potential biomarkers. We investigated the mRNA- and miRNA-transcriptome of PBMCs of healthy subjects and patients suffering from CAP or AECOPD by microarray and Taqman Low Density Array. Genes that correlated with PBMC composition were eliminated, and remaining differentially expressed genes were grouped into modules. One selected module (120 genes) was particularly suitable to discriminate AECOPD and CAP and most notably contained a subset of five biologically relevant mRNAs that differentiated between CAP and AECOPD with an AUC of 86.1%. Likewise, we identified several microRNAs, e.g. miR-545-3p and miR-519c-3p, which separated AECOPD and CAP. We furthermore retrieved an integrated network of differentially regulated mRNAs and microRNAs and identified HNF4A, MCC and MUC1 as central network regulators or most important discriminatory markers. In summary, transcriptional analysis retrieved potential biomarkers and central molecular features of CAP and AECOPD.
Passive water ascent in a tall, scalable synthetic tree
Authors: Shi Weiwei , Dalrymple Richard M. , McKenny Collin J. , Morrow David S. , Rashed Ziad T. , Surinach Daniel A. , Boreyko Jonathan B. 
Published: January 2020

AbstractThe transpiration cycle in trees is powered by a negative water potential generated within the leaves, which pumps water up a dense array of xylem conduits. Synthetic trees can mimic this transpiration cycle, but have been confined to pumping water across a single microcapillary or microfluidic channels. Here, we fabricated tall synthetic trees where water ascends up an array of large diameter conduits, to enable transpiration at the same macroscopic scale as natural trees. An array of 19 tubes of millimetric diameter were embedded inside of a nanoporous ceramic disk on one end, while their free end was submerged in a water reservoir. After saturating the synthetic tree by boiling it underwater, water can flow continuously up the tubes even when the ceramic disk was elevated over 3 m above the reservoir. A theory is developed to reveal two distinct modes of transpiration: an evaporation-limited regime and a flow-limited regime.
Identification of housekeeping genes for microRNA expression analysis in kidney tissues of Pkd1 deficient mouse models
Authors: Muñoz J. J. , Anauate A. C. , Amaral A. G. , Ferreira F. M. , Meca R. , Ormanji M. S. , Boim M. A. , Onuchic L. F. , Heilberg I. P. 
Published: January 2020

AbstractPolycystic kidney disease is a complex clinical entity which comprises a group of genetic diseases that leads to renal cyst development. We evaluated the most suitable housekeeping genes for microRNA expression by RT-qPCR analyses of kidney tissues in Pkd1-deficient mouse models from a panel of five candidates genes (miR-20a, miR-25, miR-26a, miR-191 and U6) and 3 target genes (miR-17, miR-21 and let-7a) using samples from kidneys of cystic mice (Pkd1flox/flox:Nestincre, CY), non-cystic controls (Pkd1flox/flox, NC), Pkd1-haploinsufficient (Pkd1+/−, HT), wild-type controls (Pkd1+/+, WT), severely cystic mice (Pkd1V/V, SC), wild-type controls (CO). The stability of the candidate genes was investigated using NormFinder, GeNorm, BestKeeper, DataAssist, and RefFinder software packages and the comparative ΔCt method. The analyses identified miR-26a as the most stable housekeeping gene for all kidney samples, miR-20a for CY and NC, miR-20a and miR-26a for HT and WT, and miR-25 and miR-26a for SC and CO. Expression of miR-21 was upregulated in SC compared to CO and trends of miR-21 upregulation and let-7a downregulation in CY and HT compared to its control kidneys, when normalized by different combinations of miR-20a, miR-25 and miR-26a. Our findings established miR-20a, miR-25, and miR-26a as the best housekeeping genes for miRNA expression analyses by RT-qPCR in kidney tissues of Pkd1-deficient mouse models.
Quantum control and characterization of ultrafast ionization with orthogonal two-color laser pulses
Authors: Agueny Hicham 
Published: January 2020

AbstractWe study ultrafast ionization dynamics using orthogonally polarized two-color (OTC) laser pulses involving the resonant “first plus second” (ω + 2ω) scheme. The scheme is illustrated by numerical simulations of the time-dependent Schrödinger equation and recording the photoelectron momentum distribution. On the basis of the simulations of this resonant ionization, we identify signatures of the dynamic Autler-Townes effect and dynamic interference, in which their characterization is not possible in the spectral domain. Taking advantage of the OTC scheme we show that these dynamical effects, which occur at the same time scale, can be characterized in momentum space by controlling the spatial quantum interference. In particular, we show that with the use of this control scheme, one can tailor the properties of the control pulse to lead to enhancement of the ionization rate through the Autler-Townes effect without affecting the dynamic interference. This enhancement is shown to result from constructive interferences between partial photoelectron waves having opposite-parity, and found to manifest by symmetry-breaking of the momentum distribution. The scenario is investigated for a prototype of a hydrogen atom and is broadly applicable to other systems. Our findings may have applications for photoelectron interferometers to control the electron dynamics in time and space, and for accurate temporal characterization of attosecond pulses.
Comparisons of between-group differentiation in male kinship between bonobos and chimpanzees
Authors: Ishizuka Shintaro , Takemoto Hiroyuki , Sakamaki Tetsuya , Tokuyama Nahoko , Toda Kazuya , Hashimoto Chie , Furuichi Takeshi 
Published: January 2020

AbstractPatterns of kinship among individuals in different groups have been rarely examined in animals. Two closest living relatives of humans, bonobos and chimpanzees share many characteristics of social systems including male philopatry, whereas one major difference between the two species is the nature of intergroup relationship. Intergroup relationship is basically antagonistic and males sometimes kill individuals of other groups in chimpanzees, whereas it is much more moderate in bonobos and copulations between individuals of different groups are often observed during intergroup encounters. Such behavioural differences may facilitate more frequent between-group male gene flow and greater between-group differentiation in male kinship in bonobos than in chimpanzees. Here we compared differences between average relatedness among males within groups and that among males of neighbouring groups, and between-group male genetic distance between bonobos and chimpanzees. Contrary to expectation, the differences between average relatedness among males within groups and that among males of neighbouring groups were significantly greater in bonobos than in chimpanzees. There were no significant differences in autosomal and Y-chromosomal between-group male genetic distance between the two species. Our results showed that intergroup male kinship is similarly or more differentiated in bonobos than in chimpanzees.
Metal–organic framework–derived Ni@C and NiO@C as anode catalysts for urea fuel cells
Authors: Tran Thao Quynh Ngan , Park Bang Ju , Yun Woo Hyun , Duong Tien Nhac , Yoon Hyon Hee 
Published: January 2020

AbstractHighly porous self-assembled nanostructured Ni@C and NiO@C were synthesized via calcination of a Ni-based metal–organic framework. The morphology, structure, and composition of as synthesized Ni@C and NiO@C were characterized by SEM, FIB-SEM, TEM, and XRD. The electro-catalytic activity of the Ni@C and NiO@C catalysts towards urea oxidation was investigated using cyclic voltammetry. It was found that the Ni@C had a higher residual carbon content and a higher specific surface area than NiO@C, thus exhibiting an enhanced electrochemical performance for urea oxidation. A direct urea fuel cell with Ni@C as an anode catalyst featured an excellent maximum power density of 13.8 mW cm−2 with 0.33 M urea solution in 1 M KOH as fuel and humidified air as oxidant at 50 °C, additionally showing excellent stability during continuous 20-h operation. Thus, this work showed that the highly porous carbon-supported Ni catalysts derived from Ni-based metal–organic framework can be used for urea oxidation and as an efficient anode material for urea fuel cells.
Computational data mining method for isotopomer analysis in the quantitative assessment of metabolic reprogramming
Authors: Matsuda Fumio , Maeda Kousuke , Okahashi Nobuyuki 
Published: January 2020

AbstractMeasurement of metabolic flux levels using stable isotope labeling has been successfully used to investigate metabolic redirection and reprogramming in living cells or tissues. The metabolic flux ratio between two reactions can be estimated from the 13C-labeling patterns of a few metabolites combined with the knowledge of atom mapping in the complicated metabolic network. However, it remains unclear whether an observed change in the labeling pattern of the metabolites is sufficient evidence of a shift in flux ratio between two metabolic states. In this study, a data analysis method was developed for the quantitative assessment of metabolic reprogramming. The Metropolis-Hastings algorithm was used with an in silico metabolic model to generate a probability distribution of metabolic flux levels under a condition in which the 13C-labeling pattern was observed. Reanalysis of literature data demonstrated that the developed method enables analysis of metabolic redirection using whole 13C-labeling pattern data. Quantitative assessment by Cohen’s effect size (d) enables a more detailed read-out of metabolic reprogramming information. The developed method will enable future applications of the metabolic isotopomer analysis to various targets, including cultured cells, whole tissues, and organs.
Extracellular Superoxide Dismutase Regulates Early Vascular Hyaluronan Remodeling in Hypoxic Pulmonary Hypertension
Authors: Tseng Victor , Ni Kevin , Allawzi Ayed , Prohaska Clare , Hernandez-Lagunas Laura , Elajaili Hanan , Cali Valbona , Midura Ronald , Hascall Vincent , Triggs-Raine Barbara , Petrache Irina , Hart C. Michael , Nozik-Grayck Eva 
Published: January 2020

AbstractChronic hypoxia leads to pathologic remodeling of the pulmonary vasculature and pulmonary hypertension (PH). The antioxidant enzyme extracellular superoxide dismutase (SOD3) protects against hypoxia-induced PH. Hyaluronan (HA), a ubiquitous glycosaminoglycan of the lung extracellular matrix, is rapidly recycled at sites of vessel injury and repair. We investigated the hypothesis that SOD3 preserves HA homeostasis by inhibiting oxidative and enzymatic hyaluronidase-mediated HA breakdown. In SOD3-deficient mice, hypoxia increased lung hyaluronidase expression and activity, hyaluronan fragmentation, and effacement of HA from the vessel wall of small pulmonary arteries. Hyaluronan fragmentation corresponded to hypoxic induction of the cell surface hyaluronidase-2 (Hyal2), which was localized in the vascular media. Human pulmonary artery smooth muscle cells (HPASMCs) demonstrated hypoxic induction of Hyal2 and SOD-suppressible hyaluronidase activity, congruent to our observations in vivo. Fragmentation of homeostatic high molecular weight HA promoted HPASMC proliferation in vitro, whereas pharmacologic inhibition of hyaluronidase activity prevented hypoxia- and oxidant-induced proliferation. Hypoxia initiates SOD3-dependent alterations in the structure and regulation of hyaluronan in the pulmonary vascular extracellular matrix. These changes occurred soon after hypoxia exposure, prior to appearance of PH, and may contribute to the early pathogenesis of this disease.