bluuebunny/crossref_metadata_2025_split huggingface dataset:
Disparity of selenourea and selenocystine on methaemoglobinemia in non-diabetics and diabetics
Authors: Das Debashree , Sen Souvik , Sen Kamalika 
Published: September 2020

Abstract
Organoselenium drugs like selenourea (SeU) and selenocystine (SeC) are found to exhibit several medicinal properties and have reported roles in the field of cancer prevention. However, studies related to their interactions with the major erythroid protein, haemoglobin (HbA) are still in dearth despite being of prime importance. In view of this, it was considered essential to investigate the interaction of these two anticancer drugs with Hb. Both the drugs showed significant changes in absorption spectra of Hb at wavelength of maximum absorption (λmax) 630 nm. SeU itself had no effect on the absorbance value at 630 nm with respect to time even with 400 µM concentration. However, it was rapidly converted to nanoselenium in presence of nitrite and there was an increase in the absorbance rate at 630 nm from 3.39 × 10−3 min−1 (without nitrite) to 8.94 × 10−3 min−1 in presence of nitrite (200 µM) owing to the generation of reactive oxygen species in the medium. Although the generation and increase in peak intensity at 630 nm in Hb generally indicates the formation and rise in the levels of methaemoglobin (metHb), nanoselenium was observed to follow a different path. Instead of causing oxidation of Fe2+ to Fe3+ responsible for metHb formation, nanoselenium was found to interact with the protein part, thereby causing changes in its secondary structure which is reflected in the increasing absorbance at 630 nm. SeC, however, showed a different effect. It was shown to act as a novel agent to reduce nitrite-induced metHb formation in a dose-dependent manner. The efficiency of SeC was again found to be less in diabetic blood samples as compared to the non-diabetic ones. For similar ratio of metHb to SeC (1:8), % reduction of metHb was found to be 27.46 ± 0.82 and 16.1 ± 2.4 for non-diabetic and diabetic samples, respectively, with a two tailed P-value much &lt;0.05 which implies that the data are highly significant.
An unusual case of hyalinizing clear cell carcinoma in a sinonasal cavity and cranial base
Authors: Gudelj Goran , Simunjak Tena , Zizic Marica , Simunjak Boris , Jurlina Martin 
Published: September 2020

Abstract
Hyalinizing clear cell carcinoma (HCCC) is a rare, predominantly minor salivary gland tumor. Most of these tumors occur in the oral cavity, mainly the palate and tongue. Primary localization of the tumor in the region of the nasal cavity and paranasal sinuses is extremely rare and, with only a few cases reported in the literature so far. We present an extremely rare case of a 61-year-old woman with hyalinizing clear cell carcinoma (HCCC), occupying the left posterior nasal and nasopharyngeal cavity, as a primary tumor location. The patient total recovery was uneventful, and she is now free of disease at three years postoperative follow-up.
Case series of hyena bite injuries and their surgical management in a resource-limited setup: 1-year experience
Authors: Abebe Metasebia W , Tefera Tezazu , Mengesha Mengistu G , Mengesha Mulualem W , Teshome Sisay 
Published: September 2020

Abstract
Animal bites are a significant cause of morbidity and mortality and pose a major public health problem worldwide. Children are reportedly the most common victims of animal bites. Bites may be limited to superficial tissues or lead to extensive disfiguring injuries, fractures, infections and rarely result in death. Recently, human injuries caused by non-domesticated animals are increasingly common as ecosystems change and humans encroach on previously wild land. Wild animals like hyenas have been reported to prey on humans and cattle in parts of Africa. Discussed here are four children out of 11 patients that presented with hyena bites—the children had severe bites to the face and head with extensive soft tissue loss, fractures and concomitant severe infections that led to high mortality, indicating the necessity for advanced intensive care and multidisciplinary treatment needed in such situations.
Dynamics of endoreduplication in developing barley seeds
Authors: Nowicka Anna , Kovacik Martin , Tokarz Barbara , Vrána Jan , Zhang Yueqi , Weigt Dorota , Doležel Jaroslav , Pecinka Ales 
Published: September 2020

AbstractSeeds are complex biological systems comprising three genetically distinct tissues: embryo, endosperm, and maternal tissues (including seed coats and pericarp) nested inside one another. Cereal grains represent a special type of seeds, with the largest part formed by the endosperm, a specialized triploid tissue ensuring embryo protection and nourishment. We investigated dynamic changes in DNA content in three of the major seed tissues from the time of pollination up to the dry seed. We show that the cell cycle is under strict developmental control in different seed compartments. After an initial wave of active cell division, cells switch to endocycle and most endoreduplication events are observed in the endosperm and seed maternal tissues. Using different barley cultivars, we show that there is natural variation in the kinetics of this process. During the terminal stages of seed development, specific and selective loss of endoreduplicated nuclei occurs in the endosperm. This is accompanied by reduced stability of the nuclear genome, progressive loss of cell viability, and finally programmed cell death. In summary, our study shows that endopolyploidization and cell death are linked phenomena that frame barley grain development.
Module 9: Emotion Coaching
Authors: Chronis-Tuscano Andrea , O’Brien Kelly , Danko Christina M. 
Published: September 2020

Abstract
In Module 9, parents are introduced to their important role in helping their children with attention-deficit/hyperactivity disorder (ADHD) learn to regulate strong emotions. Parents are the child’s first teachers for how to regulate emotions and serve the role of “external regulator” for their children. Children with ADHD are more sensitive to their environments and look to their parents for signs of how to react to a situation or stressor. The goal is for parents to stay calm and collected, modeling effective emotion regulation for their child during periods of stress. When parents learn to be “emotion coaches,” they are more likely to consider the child’s emotions without judgment and decrease critical or invalidating responses. By serving as the child’s “emotion coach” (noticing, tolerating and labeling the child’s emotion), the child learns “emotion language” so that acting out in response to emotions is not necessary to express how they are feeling.
KLIFS: an overhaul after the first 5 years of supporting kinase research
Authors: Kanev Georgi K , de Graaf Chris , Westerman Bart A , de Esch Iwan J P , Kooistra Albert J 
Published: September 2020

Abstract
Kinases are a prime target of drug development efforts with &gt;60 drug approvals in the past two decades. Due to the research into this protein family, a wealth of data has been accumulated that keeps on growing. KLIFS—Kinase–Ligand Interaction Fingerprints and Structures—is a structural database focusing on how kinase inhibitors interact with their targets. The aim of KLIFS is to support (structure-based) kinase research through the systematic collection, annotation, and processing of kinase structures. Now, 5 years after releasing the initial KLIFS website, the database has undergone a complete overhaul with a new website, new logo, and new functionalities. In this article, we start by looking back at how KLIFS has been used by the research community, followed by a description of the renewed KLIFS, and conclude with showcasing the functionalities of KLIFS. Major changes include the integration of approved drugs and inhibitors in clinical trials, extension of the coverage to atypical kinases, and a RESTful API for programmatic access. KLIFS is available at the new domain https://klifs.net.
Importance of base-pair opening for mismatch recognition
Authors: Bouchal Tomáš , Durník Ivo , Illík Viktor , Réblová Kamila , Kulhánek Petr 
Published: September 2020

AbstractMismatch repair is a highly conserved cellular pathway responsible for repairing mismatched dsDNA. Errors are detected by the MutS enzyme, which most likely senses altered mechanical property of damaged dsDNA rather than a specific molecular pattern. While the curved shape of dsDNA in crystallographic MutS/DNA structures suggests the role of DNA bending, the theoretical support is not fully convincing. Here, we present a computational study focused on a base-pair opening into the minor groove, a specific base-pair motion observed upon interaction with MutS. Propensities for the opening were evaluated in terms of two base-pair parameters: Opening and Shear. We tested all possible base pairs in anti/anti, anti/syn and syn/anti orientations and found clear discrimination between mismatches and canonical base-pairs only for the opening into the minor groove. Besides, the discrimination gap was also confirmed in hotspot and coldspot sequences, indicating that the opening could play a more significant role in the mismatch recognition than previously recognized. Our findings can be helpful for a better understanding of sequence-dependent mutability. Further, detailed structural characterization of mismatches can serve for designing anti-cancer drugs targeting mismatched base pairs.
Metamorphic Differentiation via Enhanced Dissolution along High Permeability Zones
Authors: Moore Jo , Beinlich Andreas , Piazolo Sandra , Austrheim Håkon , Putnis Andrew 
Published: September 2020

AbstractMetamorphic differentiation, resulting in segregated mineral bands, is commonly recorded in metamorphic rocks. Despite the ubiquitous nature of compositionally layered metamorphic rocks, the processes that are responsible for metamorphic differentiation receive very little attention. Here, detailed petrography, quantitative mineral chemistry and bulk rock analyses are applied to investigate compositional variations and assemblage microstructure. Furthermore, thermodynamic modelling is applied to provide additional constraints on the P–T–XH2O conditions of assemblage formation and mass transfer. The studied outcrop, located within the Bergen arcs of southwestern Norway, preserves the hydration of anorthositic granulite at amphibolite-facies conditions. The amphibolite-facies hydration is expressed as both a statically hydrated amphibolite and a shear zone lithology, defined by the interlayering of amphibolite with leucocratic domains. Within the granulite, quartz-lined fractures surrounded by amphibolite-facies alteration haloes represent relics of initial fluid infiltration associated with brittle failure. The fracture assemblage (quartz + plagioclase + zoisite + kyanite ± muscovite ± biotite) is identical to that occurring within leucocratic domains of the shear zone. Consequently, the compositional layering of the shear zone lithology is linked to fluid infiltration along localized zones of high permeability that result from fracturing. Mass-balance calculations indicate that quartz-lined fractures and compositional differentiation of the shear zone resulted from mass redistribution internal to the shear zone rather than partial melting or precipitation of minerals from externally derived fluid. The process of internal fractionation within the shear zone is driven by enhanced dissolution along highly permeable fracture planes resulting in the loss of MgO, Fetot and K2O from the leucocratic domains. Elements dissolved in the fluid are then transported and ultimately either precipitated in comparatively impermeable amphibolite domains or removed from the system resulting in an overall mass loss. The mass transfer causing metamorphic differentiation of the shear zone is the result of coupled reaction and diffusion under differential stress. The mechanisms of mass redistribution observed within this shear zone provides further insight into the processes that facilitate mass transfer in the Earth’s crust.
Advances and prospects in biomimetic multilayered scaffolds for articular cartilage regeneration
Authors: Fu Liwei , Yang Zhen , Gao Cangjian , Li Hao , Yuan Zhiguo , Wang Fuxin , Sui Xiang , Liu Shuyun , Guo Quanyi 
Published: September 2020

AbstractDue to the sophisticated hierarchical structure and limited reparability of articular cartilage (AC), the ideal regeneration of AC defects has been a major challenge in the field of regenerative medicine. As defects progress, they often extend from the cartilage layer to the subchondral bone and ultimately lead to osteoarthritis. Tissue engineering techniques bring new hope for AC regeneration. To meet the regenerative requirements of the heterogeneous and layered structure of native AC tissue, a substantial number of multilayered biomimetic scaffolds have been studied. Ideal multilayered scaffolds should generate zone-specific functional tissue similar to native AC tissue. This review focuses on the current status of multilayered scaffolds developed for AC defect repair, including design strategies based on the degree of defect severity and the zone-specific characteristics of AC tissue, the selection and composition of biomaterials, and techniques for design and manufacturing. The challenges and future perspectives of biomimetic multilayered scaffold strategies for AC regeneration are also discussed.
Zn-contained mussel-inspired film on Mg alloy for inhibiting bacterial infection and promoting bone regeneration
Authors: Peng Feng , Cheng Shi , Zhang Ruiying , Li Mei , Zhou Jielong , Wang Donghui , Zhang Yu 
Published: September 2020

Abstract
Infection and insufficient osteointegration are the main causes of orthopedic implant failure. Furthermore, activating favorable inflammation response is vital to the fast osteointegration of implants. Therefore, endowing the implants with multifunctions (antibacterial, anti-inflammation, and pro-osteointegration) is a promising strategy to improve the performance of orthopedic implants. In this study, a Zn-contained polydopamine (PDA) film was fabricated on AZ31 alloy. The film possessed a stable Zn ion release in 14 days. The results of electrochemical analysis implied the favorable corrosion protection of the film, and thus, leading to a suitable hemolysis ratio (below 1%). The in vitro antibacterial assessment revealed that the film exhibited excellent resistance against Staphylococcus aureus (nearly 100%), which can be ascribed to the release of Zn ions. The cell-culture evaluation revealed that the extract of Zn-contained PDA-coated sample can activate RAW264.7 polarization to an anti-inflammatory phenotype, as well as enhance the osteogenic differentiation ability of MC3T3-E1. Additionally, the femoral osteomyelitis model indicated that the as-prepared film had a high antibacterial capability at early stage of the implantation, and showed better osteogenesis and osteointegration after 8 weeks of implantation. With favorable antibacterial, anti-inflammation, and pro-osteogenesis abilities, the novel designed Zn-contained PDA film is promising to be used in Mg-based orthopedic implants.
Elucidation and refinement of synthetic receptor mechanisms
Authors: Edelstein Hailey I , Donahue Patrick S , Muldoon Joseph J , Kang Anthony K , Dolberg Taylor B , Battaglia Lauren M , Allchin Everett R , Hong Mihe , Leonard Joshua N 
Published: September 2020

Abstract
Synthetic receptors are powerful tools for engineering mammalian cell-based devices. These biosensors enable cell-based therapies to perform complex tasks such as regulating therapeutic gene expression in response to sensing physiological cues. Although multiple synthetic receptor systems now exist, many aspects of receptor performance are poorly understood. In general, it would be useful to understand how receptor design choices influence performance characteristics. In this study, we examined the modular extracellular sensor architecture (MESA) and systematically evaluated previously unexamined design choices, yielding substantially improved receptors. A key finding that might extend to other receptor systems is that the choice of transmembrane domain (TMD) is important for generating high-performing receptors. To provide mechanistic insights, we adopted and employed a Förster resonance energy transfer-based assay to elucidate how TMDs affect receptor complex formation and connected these observations to functional performance. To build further insight into these phenomena, we developed a library of new MESA receptors that sense an expanded set of ligands. Based upon these explorations, we conclude that TMDs affect signaling primarily by modulating intracellular domain geometry. Finally, to guide the design of future receptors, we propose general principles for linking design choices to biophysical mechanisms and performance characteristics.
Long-term Oncologic Impact of Positive Anterior and Posterior Surgical Margins After Radical Prostatectomy
Authors: Wu Shulin , Lin Sharron X. , Wirth Gregory J. , Lu Min , Lu Jian , Subtelny Alexander O. , Wang Zongwei , Olumi Aria F. , Dahl Douglas M. , Blute Michael L. , Wu Chin-Lee 
Published: September 2020

Objective:
The objective of this study was to evaluate the impact of the anterior/posterior status of positive surgical margin (PSM) on long-term outcomes after radical prostatectomy for prostate cancer.

Patients and Methods:
We included 391 consecutive PSM patients after radical prostatectomy between 1993 and 2007 excluding cases with multiple location PSM or lack of anterior/posterior status data. The oncologic impact of anterior-PSM and posterior-PSM were examined by Kaplan-Meier analysis and the Cox proportional hazards model.

Results:
There were 115 cases (29.4%) with apex-PSM, 257 cases (65.7%) with peripheral PSM, and 19 cases (4.9%) with bladder neck PSM. Among the 257 peripheral PSM cases, 58 cases (22.6%) were with anterior-PSM, 174 cases (67.7%) were with posterior-PSM, and 25 cases (9.7%) were with both anterior and posterior PSM. Over a median follow-up of 12.6 years, patients with anterior-PSM, especially those with low to intermediate Gleason score (≤7), showed a biochemical recurrence (BCR) prognosis similar to those with apex-PSM. In contrast, patients with posterior-PSM showed significantly higher BCR risk on both univariate and multivariate analyses when compared with those with apex-PSM. No impact on metastasis-free survival or overall survival was observed.

Conclusions:
In our study, we found that prostate cancer patients with anterior-PSM showed a more favorable BCR prognosis similar to those with apex-PSM when comparing to patients with posterior-PSM. Our study results may help physicians to choose different treatment options for patients diagnosed with different PSM status including considering further adjuvant treatment for patients with posterior-PSM.
Normal Saline and Lung Recruitment With Paediatric Endotracheal Suction
Authors: Schults Jessica A. , Cooke Marie , Long Debbie A. , Mitchell Marion L. 
Published: September 2020

Background
Normal saline instillation (NSI) and lung recruitment manoeuvres (RMs) are used in conjunction with endotracheal suction (ETS) in mechanically ventilated children. Practice is varied, and it is not currently understood what clinical practice guidelines (CPGs) are available to inform practice decisions.

Objective
The aim of this study was to identify and systematically review the quality of existing ETS CPGs, specifically in the context of NSI and RM use.

Methods
A systematic search for ETS CPGs in children (<18 years old) was conducted in Cumulative Index to Nursing and Allied Health Literature, MEDLINE, PubMed, EMBASE, and Google Scholar. Two independent assessors evaluated CPGs using the Appraisal of Guidelines for Research and Evaluation II instrument. Standardised scores were calculated for individual CPGs, and scale domain scores were calculated.

Results
Four CPGs and practice recommendations from 2 literature reviews were identified and evaluated. The routine use of NSI and RMs with paediatric ETS was not recommended. Recommendations reflected the low quality and limited availability of evidence to inform NSI and RM application. Collectively, the highest scoring domain was clarity of presentation, followed by scope and purpose (78). Overall assessments ranged from 8 to 100 from a possible 100 points. Four ETS CPGs (100%) were recommended for use with modification.

Conclusions
Clinical practice guidelines and practice recommendations pertaining to NSI and RM were consistent but, however, limited by the quality and volume of available evidence. Clinical practice guideline developers should focus on improving the applicability and rigour in development processes. Further consensus work and rigorous trials are needed to inform future CPGs.
Development and Validation of a New Domestic Software for Dose Assessment during Normal and Accident Conditions in Nuclear Power Plants (NPPS)
Authors: Shad Ali Haghighi , Masti Darioush , Allaf Mitra Athari , Sepanloo Kamran , Hossein Feghhi Seyed Amir 
Published: September 2020

Abstract
In this research, a comprehensive code called KIANA is developed based on the Gaussian plume model to simulate and predict the radiological consequences received through all the possible, reasonable, probable, and standard exposure pathways for NPPs and chemical facilities. To validate the KIANA code, a case study is modeled for Bushehr Nuclear Power Plant Unit One (BNPP-1), and the KIANA code results are compared with the results of the Final Safety Analysis Report (FSAR-2017) data of BNPP-1. To assess the performance of the KIANA code, the total dose due to the airborne pathway in accident conditions including small break LOCA (SBLOCA), large break LOCA (LBLOCA), and equivalent exposure dose for the thyroid gland of a group of infants and children age 1 to 8 y at BNPP-1, are investigated. The KIANA code results show that the total effective doses do not exceed the regulatory limit of 5 mSv for external and internal exposures and the regulatory limit of 50 mSv for thyroid equivalent dose. The KIANA code results indicate good agreement with the results of FSAR-2017.
Prosthetic Valve Endocarditis Diagnosed Because of Persistent Hemolytic Anemia After Salmonella Iliopsoas Abscess Treatment
Authors: Kitazawa Takatoshi , Yamamoto Ai , Nakayama Shin , Misu Keita , Wakabayashi Yoshitaka , Yoshino Yusuke 
Published: September 2020

Abstract
Extraintestinal salmonellosis including infective endocarditis can cause serious complications. We present a case of prosthetic mitral valve endocarditis diagnosed because of hemolytic anemia after treatment of iliopsoas abscess and bacteremia caused by Salmonella Enteritidis. We also present a review of nontyphoidal Salmonella endocarditis. Prosthetic valve endocarditis cases had similar prognosis to native valve endocarditis cases, but they required surgery frequently. In a case of Salmonella bacteremia with prosthetic valves, infective endocarditis should be ruled out.