bluuebunny/crossref_metadata_2025_split huggingface dataset:
Environmental Controls of Diffusive and Ebullitive Methane Emissions at a Subdaily Time Scale in the Littoral Zone of a Midlatitude Shallow Lake
Authors: Taoka T. , Iwata H. , Hirata R. , Takahashi Y. , Miyabara Y. , Itoh M. 
Published: September 2020

AbstractEnvironmental controls on methane (CH4) emission from lakes are poorly understood at subdaily time scales due to a lack of continuous data, especially for ebullition. We used a novel technique to partition eddy covariance CH4 flux observed in the littoral zone of a midlatitude shallow lake in Japan and examined the environmental controls on diffusion and ebullitive CH4 flux separately at a subdaily time scale in different seasons. Using the high‐frequency data, we investigated how CH4 accumulation in the water and sediment layers alters the dynamics and environmental controls of fluxes. The contribution of ebullitive flux to total flux was 57% on average. Environmental controls of diffusive and ebullitive fluxes known in the literature were confirmed. We further found that the environmental controls were different in different seasons and suggested that additional consideration of CH4 accumulation could explain the variability. The transfer of accumulated dissolved CH4 from the bottom water layer to the surface in summer and the accumulation of dissolved CH4 under surface ice in winter were suggested to be important for explaining the variability of diffusive flux. In summer, a higher ebullitive flux tended to occur following triggers such as a decrease in hydrostatic pressure. In winter, the impact of triggers was not obvious, and a higher ebullitive flux tended to occur in the morning. We suggested that the low CH4 production rate in winter slowed the replenishment of bubbles in the sediment, negating the effect of triggers on ebullition.
Unique roles of rare variants in the genetics of complex diseases in humans
Authors: Momozawa Yukihide , Mizukami Keijiro 
Published: September 2020

AbstractGenome-wide association studies have identified >10,000 genetic variants associated with various phenotypes and diseases. Although the majority are common variants, rare variants with >0.1% of minor allele frequency have been investigated by imputation and using disease-specific custom SNP arrays. Rare variants sequencing analysis mainly revealed have played unique roles in the genetics of complex diseases in humans due to their distinctive features, in contrast to common variants. Unique roles are hypothesis-free evidence for gene causality, a precise target of functional analysis for understanding disease mechanisms, a new favorable target for drug development, and a genetic marker with high disease risk for personalized medicine. As whole-genome sequencing continues to identify more rare variants, the roles associated with rare variants will also increase. However, a better estimation of the functional impact of rare variants across whole genome is needed to enhance their contribution to improvements in human health.
IDH1/2 mutations in acute myeloid leukemia patients and risk of coronary artery disease and cardiac dysfunction—a retrospective propensity score analysis
Authors: Kattih Badder , Shirvani Amir , Klement Piroska , Garrido Abel Martin , Gabdoulline Razif , Liebich Alessandro , Brandes Maximilian , Chaturvedi Anuhar , Seeger Timon , Thol Felicitas , Göhring Gudrun , Schlegelberger Brigitte , Geffers Robert , John David , Bavendiek Udo , Bauersachs Johann , Ganser Arnold , Heineke Joerg , Heuser Michael 
Published: September 2020

AbstractClonal hematopoiesis of indeterminate potential (CHIP) is linked to leukemia gene mutations and associates with an increased risk for coronary artery disease and poor prognosis in ischemic cardiomyopathy. Two recurrently mutated genes in CHIP and adult acute myeloid leukemia (AML) encode for isocitrate dehydrogenases 1 and 2 (IDH1 and IDH2). Global expression of mutant IDH2 in transgenic mice-induced dilated cardiomyopathy and muscular dystrophy. In this retrospective observational study, we investigated whether mutant IDH1/2 predisposes to cardiovascular disease in AML patients. Among 363 AML patients, IDH1 and IDH2 mutations were detected in 26 (7.2%) and 39 patients (10.7%), respectively. Mutant IDH1 patients exhibited a significantly higher prevalence of coronary artery disease (26.1% vs. 6.4%, p = 0.002). Applying inverse probability-weighting analysis, patients with IDH1/2 mutations had a higher risk for a declining cardiac function during AML treatment compared to IDH1/2 wild type patients [left ventricular ejection fraction pretreatment compared to 10 months after diagnosis: 59.2% to 41.9% (p < 0.001) vs 58.5% to 55.4% (p = 0.27), respectively]. Mechanistically, RNA sequencing and immunostaining in hiPS-derived cardiomyocytes indicated that the oncometabolite R-2HG exacerbated doxorubicin mediated cardiotoxicity. Evaluation of IDH1/2 mutation status may therefore help identifying AML patients at risk for cardiovascular complications during cytotoxic treatment.
Novel insights into stress-induced susceptibility to influenza: corticosterone impacts interferon-β responses by Mfn2-mediated ubiquitin degradation of MAVS
Authors: Luo Zhuo , Liu Li-Fang , Jiang Ying-Nan , Tang Lu-Ping , Li Wen , Ouyang Shu-Hua , Tu Long-Fang , Wu Yan-Ping , Gong Hai-Biao , Yan Chang-Yu , Jiang Shan , Lu Yu-Hui , Liu Tongzheng , Jiang Zhenyou , Kurihara Hiroshi , Yu Yang , Yao Xin-Sheng , Li Yi-Fang , He Rong-Rong 
Published: September 2020

AbstractAlthough stress has been known to increase the susceptibility of pathogen infection, the underlying mechanism remains elusive. In this study, we reported that restraint stress dramatically enhanced the morbidity and mortality of mice infected with the influenza virus (H1N1) and obviously aggravated lung inflammation. Corticosterone (CORT), a main type of glucocorticoids in rodents, was secreted in the plasma of stressed mice. We further found that this stress hormone significantly boosted virus replication by restricting mitochondrial antiviral signaling (MAVS) protein-transduced IFN-β production without affecting its mRNA level, while the deficiency of MAVS abrogated stress/CORT-induced viral susceptibility in mice. Mechanistically, the effect of CORT was mediated by proteasome-dependent degradation of MAVS, thereby resulting in the impediment of MAVS-transduced IFN-β generation in vivo and in vitro. Furthermore, RNA-seq assay results indicated the involvement of Mitofusin 2 (Mfn2) in this process. Gain- and loss-of-function experiments indicated that Mfn2 interacted with MAVS and recruited E3 ligase SYVN1 to promote the polyubiquitination of MAVS. Co-immunoprecipitation experiments clarified an interaction between any two regions of Mfn2 (HR1), MAVS (C-terminal/TM) and SYVN1 (TM). Collectively, our findings define the Mfn2-SYVN1 axis as a new signaling cascade for proteasome-dependent degradation of MAVS and a ‘fine tuning’ of antiviral innate immunity in response to influenza infection under stress.
The influence of choline treatment on behavioral and neurochemical autistic-like phenotype in Mthfr-deficient mice
Authors: Agam Galila , Taylor Zoe , Vainer Ella , Golan Hava M. 
Published: September 2020

AbstractImbalanced one carbon metabolism and aberrant autophagy is robustly reported in patients with autism. Polymorphism in the gene methylenetetrahydrofolate reductase (Mthfr), encoding for a key enzyme in this pathway is associated with an increased risk for autistic-spectrum-disorders (ASDs). Autistic-like core and associated behaviors have been described, with contribution of both maternal and offspring Mthfr+/−genotype to the different domains of behavior. Preconception and prenatal supplementation with methyl donor rich diet to human subjects and mice reduced the risk for developing autism and autistic-like behavior, respectively. Here we tested the potential of choline supplementation to Mthfr-deficient mice at young-adulthood to reduce behavioral and neurochemical changes reminiscent of autism characteristics. We show that offspring of Mthfr+/−mothers, whether wildtype or heterozygote, exhibit autistic-like behavior, altered brain p62 protein levels and LC3-II/LC3-I levels ratio, both, autophagy markers. Choline supplementation to adult offspring of Mthfr+/−mothers for 14 days counteracted characteristics related to repetitive behavior and anxiety both in males and in females and improved social behavior solely in male mice. Choline treatment also normalized deviant cortical levels of the autophagy markers measured in male mice. The results demonstrate that choline supplementation even at adulthood, not tested previously, to offspring of Mthfr-deficient mothers, attenuates the autistic-like phenotype. If this proof of concept is replicated it might promote translation of these results to treatment recommendation for children with ASDs bearing similar genetic/metabolic make-up.
Preclinical evaluation of a regimen combining chidamide and ABT-199 in acute myeloid leukemia
Authors: Chen Kai , Yang Qianying , Zha Jie , Deng Manman , Zhou Yong , Fu Guofeng , Bi Silei , Feng Liying , Xu-Monette Zijun Y. , Chen Xiao Lei , Fu Guo , Dai Yun , Young Ken H. , Xu Bing 
Published: September 2020

AbstractAcute myeloid leukemia (AML) is a heterogeneous myeloid neoplasm with poor clinical outcome, despite the great progress in treatment in recent years. The selective Bcl-2 inhibitor venetoclax (ABT-199) in combination therapy has been approved for the treatment of newly diagnosed AML patients who are ineligible for intensive chemotherapy, but resistance can be acquired through the upregulation of alternative antiapoptotic proteins. Here, we reported that a newly emerged histone deacetylase inhibitor, chidamide (CS055), at low-cytotoxicity dose enhanced the anti-AML activity of ABT-199, while sparing normal hematopoietic progenitor cells. Moreover, we also found that chidamide showed a superior resensitization effect than romidepsin in potentiation of ABT-199 lethality. Inhibition of multiple HDACs rather than some single component might be required. The combination therapy was also effective in primary AML blasts and stem/progenitor cells regardless of disease status and genetic aberrance, as well as in a patient-derived xenograft model carrying FLT3-ITD mutation. Mechanistically, CS055 promoted leukemia suppression through DNA double-strand break and altered unbalance of anti- and pro-apoptotic proteins (e.g., Mcl-1 and Bcl-xL downregulation, and Bim upregulation). Taken together, these results show the high therapeutic potential of ABT-199/CS055 combination in AML treatment, representing a potent and alternative salvage therapy for the treatment of relapsed and refractory patients with AML.
Alcohol-based highly conductive polymer for conformal nanocoatings on hydrophobic surfaces toward a highly sensitive and stable pressure sensor
Authors: Lee Jung Joon , Gandla Srinivas , Lim Byeongjae , Kang Sunju , Kim Sunyoung , Lee Sunjong , Kim Sunkook 
Published: September 2020

AbstractConformal and ultrathin coating of highly conductive PEDOT:PSS on hydrophobic uneven surfaces is essential for resistive-based pressure sensor applications. For this purpose, a water-based poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT:PSS) solution was successfully exchanged to an organic solvent-based PEDOT:PSS solution without any aggregation or reduction in conductivity using the ultrafiltration method. Among various solvents, the ethanol (EtOH) solvent-exchanged PEDOT:PSS solution exhibited a contact angle of 34.67°, which is much lower than the value of 96.94° for the water-based PEDOT:PSS solution. The optimized EtOH-based PEDOT:PSS solution exhibited conformal and uniform coating, with ultrathin nanocoated films obtained on a hydrophobic pyramid polydimethylsiloxane (PDMS) surface. The fabricated pressure sensor showed high performances, such as high sensitivity (−21 kPa−1 in the low pressure regime up to 100 Pa), mechanical stability (over 10,000 cycles without any failure or cracks) and a fast response time (90 ms). Finally, the proposed pressure sensor was successfully demonstrated as a human blood pulse rate sensor and a spatial pressure sensor array for practical applications. The solvent exchange process using ultrafiltration for these applications can be utilized as a universal technique for improving the coating property (wettability) of conducting polymers as well as various other materials.
Association of APOE e2 genotype with Alzheimer’s and non-Alzheimer’s neurodegenerative pathologies
Authors: Goldberg Terry E. , Huey Edward D. , Devanand D. P. 
Published: September 2020

AbstractThe apolipoprotein E (APOE) gene contains both the major common risk variant for late onset Alzheimer’s disease (AD), e4, and the major neuroprotective variant, e2. Here we examine the association of APOE e2 with multiple neurodegenerative pathologies, leveraging the NACC v. 10 database of 1557 brains that included 130 e2 carriers and 679 e4 carriers in order to examine potential neuroprotective effects. For AD-related pathologies of amyloid plaques and Braak stage, e2 had large and highly significant protective effects contrasted with e3/e3 and e4 carriers with odds ratios of about 0.50 for e3 contrasts and 0.10 for e4 contrasts. When we separately examined e2/e4 carriers, risk for AD pathologies was similar to that of e4 carriers, not e2 carriers. For multiple fronto-temporal lobar pathologies and tauopathies, e2 was not significantly associated with pathology. In sum, we found that e2 was associated with large but circumscribed protective effects.
The influence of soil age on ecosystem structure and function across biomes
Authors: Delgado-Baquerizo Manuel , Reich Peter B. , Bardgett Richard D. , Eldridge David J. , Lambers Hans , Wardle David A. , Reed Sasha C. , Plaza César , Png G. Kenny , Neuhauser Sigrid , Berhe Asmeret Asefaw , Hart Stephen C. , Hu Hang-Wei , He Ji-Zheng , Bastida Felipe , Abades Sebastián , Alfaro Fernando D. , Cutler Nick A. , Gallardo Antonio , García-Velázquez Laura , Hayes Patrick E. , Hseu Zeng-Yei , Pérez Cecilia A. , Santos Fernanda , Siebe Christina , Trivedi Pankaj , Sullivan Benjamin W. , Weber-Grullon Luis , Williams Mark A. , Fierer Noah 
Published: September 2020

AbstractThe importance of soil age as an ecosystem driver across biomes remains largely unresolved. By combining a cross-biome global field survey, including data for 32 soil, plant, and microbial properties in 16 soil chronosequences, with a global meta-analysis, we show that soil age is a significant ecosystem driver, but only accounts for a relatively small proportion of the cross-biome variation in multiple ecosystem properties. Parent material, climate, vegetation and topography predict, collectively, 24 times more variation in ecosystem properties than soil age alone. Soil age is an important local-scale ecosystem driver; however, environmental context, rather than soil age, determines the rates and trajectories of ecosystem development in structure and function across biomes. Our work provides insights into the natural history of terrestrial ecosystems. We propose that, regardless of soil age, changes in the environmental context, such as those associated with global climatic and land-use changes, will have important long-term impacts on the structure and function of terrestrial ecosystems across biomes.
Global temperature modes shed light on the Holocene temperature conundrum
Authors: Bader Jürgen , Jungclaus Johann , Krivova Natalie , Lorenz Stephan , Maycock Amanda , Raddatz Thomas , Schmidt Hauke , Toohey Matthew , Wu Chi-Ju , Claussen Martin 
Published: September 2020

AbstractReconstructions of the global mean annual temperature evolution during the Holocene yield conflicting results. One temperature reconstruction shows global cooling during the late Holocene. The other reconstruction reveals global warming. Here we show that both a global warming mode and a cooling mode emerge when performing a spatio-temporal analysis of annual temperature variability during the Holocene using data from a transient climate model simulation. The warming mode is most pronounced in the tropics. The simulated cooling mode is determined by changes in the seasonal cycle of Arctic sea-ice that are forced by orbital variations and volcanic eruptions. The warming mode dominates in the mid-Holocene, whereas the cooling mode takes over in the late Holocene. The weighted sum of the two modes yields the simulated global temperature trend evolution. Our findings have strong implications for the interpretation of proxy data and the selection of proxy locations to compute global mean temperatures.
Cold spells in the Nordic Seas during the early Eocene Greenhouse
Authors: Vickers Madeleine L. , Lengger Sabine K. , Bernasconi Stefano M. , Thibault Nicolas , Schultz Bo Pagh , Fernandez Alvaro , Ullmann Clemens V. , McCormack Paul , Bjerrum Christian J. , Rasmussen Jan Audun , Hougård Iben Winther , Korte Christoph 
Published: September 2020

AbstractThe early Eocene (c. 56 - 48 million years ago) experienced some of the highest global temperatures in Earth’s history since the Mesozoic, with no polar ice. Reports of contradictory ice-rafted erratics and cold water glendonites in the higher latitudes have been largely dismissed due to ambiguity of the significance of these purported cold-climate indicators. Here we apply clumped isotope paleothermometry to a traditionally qualitative abiotic proxy, glendonite calcite, to generate quantitative temperature estimates for northern mid-latitude bottom waters. Our data show that the glendonites of the Danish Basin formed in waters below 5 °C, at water depths of <300 m. Such near-freezing temperatures have not previously been reconstructed from proxy data for anywhere on the early Eocene Earth, and these data therefore suggest that regionalised cool episodes punctuated the background warmth of the early Eocene, likely linked to eruptive phases of the North Atlantic Igneous Province.
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
Authors: Ning Daliang , Yuan Mengting , Wu Linwei , Zhang Ya , Guo Xue , Zhou Xishu , Yang Yunfeng , Arkin Adam P. , Firestone Mary K. , Zhou Jizhong 
Published: September 2020

AbstractUnraveling the drivers controlling community assembly is a central issue in ecology. Although it is generally accepted that selection, dispersal, diversification and drift are major community assembly processes, defining their relative importance is very challenging. Here, we present a framework to quantitatively infer community assembly mechanisms by phylogenetic bin-based null model analysis (iCAMP). iCAMP shows high accuracy (0.93–0.99), precision (0.80–0.94), sensitivity (0.82–0.94), and specificity (0.95–0.98) on simulated communities, which are 10–160% higher than those from the entire community-based approach. Application of iCAMP to grassland microbial communities in response to experimental warming reveals dominant roles of homogeneous selection (38%) and ‘drift’ (59%). Interestingly, warming decreases ‘drift’ over time, and enhances homogeneous selection which is primarily imposed on Bacillales. In addition, homogeneous selection has higher correlations with drought and plant productivity under warming than control. iCAMP provides an effective and robust tool to quantify microbial assembly processes, and should also be useful for plant and animal ecology.
Bending reliability of screen-printed vias for a flexible energy module
Authors: Kujala Manu , Kololuoma Terho , Keskinen Jari , Lupo Donald , Mäntysalo Matti , Kraft Thomas M. 
Published: September 2020

AbstractThe future of printed electronics involves advancements not only related to full system integration, but also lean process manufacturing. A critical aspect of this progress is developed in this study, which evaluates a highly flexible screen printed through-hole-via using silver microparticle inks, for applications in energy harvesting and storage modules. The printed vias’ fabrication and durability are evaluated by means of a double sided screen-printing method and repetitive (cyclic) bending tests. Vias, through 125-µm-thick PET foil, were laser cut (nominally 50, 100, 150, and 200 µm diameters) then filled, and simultaneously connected to adjacent vias by screen printing. To investigate the use of the printed via in a monolithic energy module, the vias were used for the fabrication of a flexible printed supercapacitor containing aqueous electrolyte and carbon electrodes. The results indicate that the lower viscosity silver ink (DuPont 5064H) fills the via less effectively than the higher viscosity ink (Asahi LS411AW), and as the via size increases (≥150 µm diameter) via walls are coated rather than filled. Conversely, the more viscous ink fills the via thoroughly and exhibited a 100% yield (1010 vias; 100 µm nominal via diameter) with the two-step direct screen-printing method. The 10-mm radius bending test showed no signs of via specific breakdown after 30,000 cycles. The results indicate that this via filling process is likely roll-to-roll compatible to enable multi-layered printed electronic devices.
Encoding scheme using quantum dots for single logical qubit information onto four-photon decoherence-free states
Authors: Heo Jino , Hong Changho , Kang Min-Sung , Yang Hyung-Jin 
Published: September 2020

AbstractWe designed an encoding scheme, using quantum dots (QDs), for single logical qubit information by encoding quantum information onto four-photon decoherence-free states to acquire immunity against collective decoherence. The designed scheme comprised of QDs, confined in single-sided cavities (QD-cavity systems), used for arbitrary quantum information, encoded onto four-photon decoherence-free states (logical qubits). For our scheme, which can generate the four-photon decoherence-free states, and can encode quantum information onto logical qubits, high efficiency and reliable performance of the interaction between the photons and QD-cavity systems is essential. Thus, through our analysis of the performance of QD-cavity systems under vacuum noise and sideband leakage, we demonstrate that the encoding scheme for single logical qubit information could be feasibly implemented.
Azobenzene-based sinusoidal surface topography drives focal adhesion confinement and guides collective migration of epithelial cells
Authors: Fedele Chiara , Mäntylä Elina , Belardi Brian , Hamkins-Indik Tiama , Cavalli Silvia , Netti Paolo A. , Fletcher Daniel A. , Nymark Soile , Priimagi Arri , Ihalainen Teemu O. 
Published: September 2020

AbstractSurface topography is a key parameter in regulating the morphology and behavior of single cells. At multicellular level, coordinated cell displacements drive many biological events such as embryonic morphogenesis. However, the effect of surface topography on collective migration of epithelium has not been studied in detail. Mastering the connection between surface features and collective cellular behaviour is highly important for novel approaches in tissue engineering and repair. Herein, we used photopatterned microtopographies on azobenzene-containing materials and showed that smooth topographical cues with proper period and orientation can efficiently orchestrate cell alignment in growing epithelium. Furthermore, the experimental system allowed us to investigate how the orientation of the topographical features can alter the speed of wound closure in vitro. Our findings indicate that the extracellular microenvironment topography coordinates their focal adhesion distribution and alignment. These topographic cues are able to guide the collective migration of multicellular systems, even when cell–cell junctions are disrupted.