bluuebunny/crossref_metadata_2025_split huggingface dataset:
Diversity of interneurons in the lateral and basal amygdala
Authors: Polepalli Jai S. , Gooch Helen , Sah Pankaj 
Published: August 2020

AbstractThe basolateral amygdala (BLA) is a temporal lobe structure that contributes to a host of behaviors. In particular, it is a central player in learning about aversive events and thus assigning emotional valence to sensory events. It is a cortical-like structure and contains glutamatergic pyramidal neurons and GABAergic interneurons. It is divided into the lateral (LA) and basal (BA) nuclei that have distinct cell types and connections. Interneurons in the BLA are a heterogenous population, some of which have been implicated in specific functional roles. Here we use optogenetics and slice electrophysiology to investigate the innervation, postsynaptic receptor stoichiometry, and plasticity of excitatory inputs onto interneurons within the BLA. Interneurons were divided into six groups based on their discharge properties, each of which received input from the auditory thalamus (AT) and auditory cortex (AC). Auditory innervation was concentrated in the LA, and optogenetic stimulation evoked robust synaptic responses in nearly all interneurons, drove many cells to threshold, and evoked disynaptic inhibition in most interneurons. Auditory input to the BA was sparse, innervated fewer interneurons, and evoked smaller synaptic responses. Biophysically, the subunit composition and distribution of AMPAR and NMDAR also differed between the two nuclei, with fewer BA IN expressing calcium permeable AMPAR, and a higher proportion expressing GluN2B-containing NMDAR. Finally, unlike LA interneurons, LTP could not be induced in the BA. These findings show that interneurons in the LA and BA are physiologically distinct populations and suggest they may have differing roles during associative learning.
Genome-scale reconstruction of Paenarthrobacter aurescens TC1 metabolic model towards the study of atrazine bioremediation
Authors: Ofaim Shany , Zarecki Raphy , Porob Seema , Gat Daniella , Lahav Tamar , Kashi Yechezkel , Aly Radi , Eizenberg Hanan , Ronen Zeev , Freilich Shiri 
Published: August 2020

AbstractAtrazine is an herbicide and a pollutant of great environmental concern that is naturally biodegraded by microbial communities. Paenarthrobacter aurescens TC1 is one of the most studied degraders of this herbicide. Here, we developed a genome scale metabolic model for P. aurescens TC1, iRZ1179, to study the atrazine degradation process at organism level. Constraint based flux balance analysis and time dependent simulations were used to explore the organism’s phenotypic landscape. Simulations aimed at designing media optimized for supporting growth and enhancing degradation, by passing the need in strain design via genetic modifications. Growth and degradation simulations were carried with more than 100 compounds consumed by P. aurescens TC1. In vitro validation confirmed the predicted classification of different compounds as efficient, moderate or poor stimulators of growth. Simulations successfully captured previous reports on the use of glucose and phosphate as bio-stimulators of atrazine degradation, supported by in vitro validation. Model predictions can go beyond supplementing the medium with a single compound and can predict the growth outcomes for higher complexity combinations. Hence, the analysis demonstrates that the exhaustive power of the genome scale metabolic reconstruction allows capturing complexities that are beyond common biochemical expertise and knowledge and further support the importance of computational platforms for the educated design of complex media. The model presented here can potentially serve as a predictive tool towards achieving optimal biodegradation efficiencies and for the development of ecologically friendly solutions for pollutant degradation.
Extracting band edge profiles at semiconductor heterostructures from hard-x-ray core-level photoelectron spectra
Authors: Sushko Peter V. , Chambers Scott A. 
Published: August 2020

AbstractInternal electric fields that underpin functioning of multi-component materials systems and devices are coupled to structural and compositional inhomogeneities associated with interfaces in these systems. Hard-x-ray photoelectron spectroscopy is a valuable source of information on band-edge profiles, governed by the distribution of internal fields, deep inside semiconductor thin films and heterojunctions. However, extracting this information requires robust and physically meaningful decomposition of spectra into contributions from individual atomic planes. We present an approach that utilizes the physical requirements of a monotonic dependence of the built-in electrostatic potential on depth and continuity of the potential function and its derivatives. These constraints enable efficient extraction of band-edge profiles and allow one to capture details of the electronic structure, including determination of the signs and magnitudes of the band bending as well as the valence band offsets. The utility of this approach to generate quantitative insight into the electronic structure of complex materials is illustrated for epitaxial $$\hbox {SrTiO}_3$$SrTiO3 on intrinsic Si(001).
Solvothermal synthesis of facet-dependent BiVO4 photocatalyst with enhanced visible-light-driven photocatalytic degradation of organic pollutant: assessment of toxicity by zebrafish embryo
Authors: Kamble Ganesh S. , Ling Yong-Chien 
Published: August 2020

AbstractThe BiVO4 photocatalyst plays a very important role in photocatalytic reactions attributed to its unique crystalline structure, size, morphology and surface area. Herein, we report a facet-dependent monoclinic scheelite BiVO4 (m-BiVO4) photocatalyst with uniform truncated square (18 sided) hexagonal bipyramidal shape synthesized by a template-free and surfactant-free solvothermal method using ethylene glycol solvent under cost-effective and mild reactions. The structural, morphological and optical properties of the m-BiVO4 photocatalyst are widely characterized. The photocatalytic activity of the m-BiVO4 photocatalyst is tested towards 20 ppm methylene blue (MB) dye aqueous solution as a pollutant model under visible light irradiation. Enhanced visible-light driven photoactivity with dye degradation efficiency of approx. 91% at a rate of 0.388 × 10−2 min−1 is obtained, presumably due to the presence of high-active (040) facets. Zebrafish embryo toxicity test of treated MB dye solution reveals the degradation and toxicity reduction of the MB dye. Moreover, the recycling experiment validates that the m-BiVO4 photocatalyst has a great structural stability with reliable performance. This work may provide a lucid and expedient strategy to synthesize highly crystalline (040) facet-dependent semiconductor photocatalyst toward dye degradation and obviously industrial wastewater remediation.
Computational discrimination between natural images based on gaze during mental imagery
Authors: Wang Xi , Ley Andreas , Koch Sebastian , Hays James , Holmqvist Kenneth , Alexa Marc 
Published: August 2020

AbstractWhen retrieving image from memory, humans usually move their eyes spontaneously as if the image were in front of them. Such eye movements correlate strongly with the spatial layout of the recalled image content and function as memory cues facilitating the retrieval procedure. However, how close the correlation is between imagery eye movements and the eye movements while looking at the original image is unclear so far. In this work we first quantify the similarity of eye movements between recalling an image and encoding the same image, followed by the investigation on whether comparing such pairs of eye movements can be used for computational image retrieval. Our results show that computational image retrieval based on eye movements during spontaneous imagery is feasible. Furthermore, we show that such a retrieval approach can be generalized to unseen images.
Whole-exome sequencing and genome-wide evolutionary analyses identify novel candidate genes associated with infrared perception in pit vipers
Authors: Tu Na , Liang Dan , Zhang Peng 
Published: August 2020

AbstractPit vipers possess a unique thermal sensory system consisting of facial pits that allow them to detect minute temperature fluctuations within their environments. Biologists have long attempted to elucidate the genetic basis underlying the infrared perception of pit vipers. Early studies have shown that theTRPA1gene is the thermal sensor associated with infrared detection in pit vipers. However, whether genes other thanTRPA1are also involved in the infrared perception of pit vipers remains unknown. Here, we sequenced the whole exomes of ten snake species and performed genome-wide evolutionary analyses to search for novel candidate genes that might be involved in the infrared perception of pit vipers. We applied both branch-length-comparison and selection-pressure-alteration analyses to identify genes that specifically underwent accelerated evolution in the ancestral lineage of pit vipers. A total of 47 genes were identified. These genes were significantly enriched in the ion transmembrane transporter, stabilization of membrane potential, and temperature gating activity functional categories. The expression levels of these candidate genes in relevant nerve tissues (trigeminal ganglion, dorsal root ganglion, midbrain, and cerebrum) were also investigated in this study. We further chose one of our candidate genes, the potassium channel geneKCNK4, as an example to discuss its possible role in the infrared perception of pit vipers. Our study provides the first genome-wide survey of infrared perception-related genes in pit vipers via comparative evolutionary analyses and reveals valuable candidate genes for future functional studies.
Deep learning on the 2-dimensional Ising model to extract the crossover region with a variational autoencoder
Authors: Walker Nicholas , Tam Ka-Ming , Jarrell Mark 
Published: August 2020

AbstractThe 2-dimensional Ising model on a square lattice is investigated with a variational autoencoder in the non-vanishing field case for the purpose of extracting the crossover region between the ferromagnetic and paramagnetic phases. The encoded latent variable space is found to provide suitable metrics for tracking the order and disorder in the Ising configurations that extends to the extraction of a crossover region in a way that is consistent with expectations. The extracted results achieve an exceptional prediction for the critical point as well as agreement with previously published results on the configurational magnetizations of the model. The performance of this method provides encouragement for the use of machine learning to extract meaningful structural information from complex physical systems where little a priori data is available.
Innovative problem-solving in wild hyenas is reliable across time and contexts
Authors: Johnson-Ulrich Lily , Holekamp Kay E. , Hambrick David Z. 
Published: August 2020

AbstractIndividual differences in behavior are the raw material upon which natural selection acts, but despite increasing recognition of the value of considering individual differences in the behavior of wild animals to test evolutionary hypotheses, this approach has only recently become popular for testing cognitive abilities. In order for the intraspecific approach with wild animals to be useful for testing evolutionary hypotheses about cognition, researchers must provide evidence that measures of cognitive ability obtained from wild subjects reflect stable, general traits. Here, we used a multi-access box paradigm to investigate the intra-individual reliability of innovative problem-solving ability across time and contexts in wild spotted hyenas (Crocuta crocuta). We also asked whether estimates of reliability were affected by factors such as age-sex class, the length of the interval between tests, or the number of times subjects were tested. We found significant contextual and temporal reliability for problem-solving. However, problem-solving was not reliable for adult subjects, when trials were separated by more than 17 days, or when fewer than seven trials were conducted per subject. In general, the estimates of reliability for problem-solving were comparable to estimates from the literature for other animal behaviors, which suggests that problem-solving is a stable, general trait in wild spotted hyenas.
Cytokine production in patients with recurrent acute tonsillitis: analysis of tonsil samples and blood
Authors: Geißler Katharina , Weigel Cynthia , Schubert Katja , Rubio Ignacio , Guntinas-Lichius Orlando 
Published: August 2020

AbstractThe aim of this study was to examine T cell function in tonsils of patients with recurrent acute tonsillitis (RAT) or peritonsillar abscess (PTA) by analyzing the cytokine production following T cell receptor (TCR) and co-receptor stimulation with a combination of anti-CD3 and anti-CD28 antibodies. The release of IFN-γ, TNF-α, IL-2, IL-4, IL-6, IL-10 and IL-17A from isolated, stimulated T cells of 27 palatine tonsils (10 RAT, 7 PTA, 10 tonsils without inflammation) was measured via a bead-based flow cytometric analysis. The results were compared with the cytokine release of isolated peripheral T cells in a subset of the same patients (6 PTA, 4 patients without signs of inflammation in the blood). TCR stimulation increased the concentration of released cytokines in tonsil and blood as well as in different forms of inflammation and tissue with no inflammation. Stimulation increased the pro-inflammatory cytokines TNF-α, IFN-γ, and IL-2 more than the anti-inflammatory cytokines IL-4 and IL-10 in tonsil and blood samples in RAT, PTA, and samples without inflammation. Blood of patients with PTA showed a higher pro-inflammatory cytokine level compared to the samples of patients without inflammation. T cells in tonsils are fully responsive and competent for antigen-induced cytokine production in RAT and PTA. One should be aware that tonsillectomy, if indicated, might remove a functioning immune organ. Tonsillotomy might be an alternative even in adults to maintain immunological function.
Mannheimia haemolytica and lipopolysaccharide induce airway epithelial inflammatory responses in an extensively developed ex vivo calf model
Authors: Cai Yang , Varasteh Soheil , van Putten Jos P. M. , Folkerts Gert , Braber Saskia 
Published: August 2020

AbstractPulmonary infection is associated with inflammation and damage to the bronchial epithelium characterized by an increase in the release of inflammatory factors and a decrease in airway barrier function. Our objective is to optimize a method for the isolation and culture of primary bronchial epithelial cells (PBECs) and to provide an ex vivo model to study mechanisms of epithelial airway inflammation. PBECs were isolated and cultured from the airways of calves in a submerged cell culture and liquid–liquid interface system. A higher yield and cell viability were obtained after stripping the epithelium from the bronchial section compared to cutting the bronchial section in smaller pieces prior to digestion. Mannheimia haemolytica and lipopolysaccharide (LPS) as stimulants increased inflammatory responses (IL-8, IL-6 and TNF-α release), possibly, by the activation of "TLR-mediated MAPKs and NF-κB" signaling. Furthermore, M. haemolytica and LPS disrupted the bronchial epithelial layer as observed by a decreased transepithelial electrical resistance and zonula occludens-1 and E-cadherin expression. An optimized isolation and culture method for calf PBECs was developed, which cooperated with animal use Replacement, Reduction and Refinement (3R's) principle, and can also contribute to the increased knowledge and development of effective therapies for other animal and humans (childhood) respiratory diseases.
AlN formation by an Al/GaN substitution reaction
Authors: Noorprajuda Marsetio , Ohtsuka Makoto , Adachi Masayoshi , Fukuyama Hiroyuki 
Published: August 2020

AbstractAluminium nitride (AlN) is a promising semiconductor material for use as a substrate in high-power, high-frequency electronic and deep-ultraviolet optoelectronic devices. We study the feasibility of a novel AlN fabrication technique by using the Al/GaN substitution reaction method. The substitution method we propose here consists of an Al deposition process on a GaN substrate by a sputtering technique and heat treatment process. The substitution reaction (Al + GaN = AlN + Ga) is proceeded by heat treatment of the Al/GaN sample, which provides a low temperature, simple and easy process. C-axis-oriented AlN layers are formed at the Al/GaN interface after heat treatment of the Al/GaN samples at some conditions of 1473–1573 K for 0–3 h. A longer holding time leads to an increase in the thickness of the AlN layer. The growth rate of the AlN layer is controlled by the interdiffusion in the AlN layer.
From Persian Gulf to Indonesia: interrelated phylogeographic distance and chemistry within the genus Peronia (Onchidiidae, Gastropoda, Mollusca)
Authors: Maniei Fatemeh , Amiri Moghaddam Jamshid , Crüsemann Max , Beemelmanns Christine , König Gabriele M. , Wägele Heike 
Published: August 2020

AbstractThe knowledge of relationships between taxa is essential to understand and explain the chemical diversity of the respective groups. Here, twelve individuals of the panpulmonate slug Peronia persiae from two localities in Persian Gulf, and one animal of P. verruculata from Bangka Island, Indonesia, were analyzed in a phylogenetic and chemotaxonomic framework. Based on the ABGD test and haplotype networking using COI gene sequences of Peronia specimens, nine well-supported clades were found. Haplotype network analysis highlighted a considerable distance between the specimens of P. persiae and other clades. Metabolomic analysis of both species using tandem mass spectrometry-based GNPS molecular networking revealed a large chemical diversity within Peronia of different clades and localities. While P. persiae from different localities showed a highly similar metabolome, only few identical chemical features were found across the clades. The main common metabolites in both Peronia species were assigned as polypropionate esters of onchitriols and ilikonapyrones, and osmoprotectant amino acid-betaine compounds. On the other hand, the isoflavonoids genistein and daidzein were exclusively detected in P. persiae, while cholesterol and conjugated chenodeoxycholic acids were only found in P. verruculata. Flavonoids, bile acids, and amino acid-betaine compounds were not reported before from Onchidiidae, some are even new for panpulmonates. Our chemical analyses indicate a close chemotaxonomic relation between phylogeographically distant Peronia species.
Tricortical iliac crest allograft with anterolateral single rod screw instrumentation in the treatment of thoracic and lumbar spinal tuberculosis
Authors: Zeng Yanping , Fan Yong , Luo Fei , Hou Tianyong , Dai Fei , Xu Jianzhong , Zhang Zehua 
Published: August 2020

AbstractTo assess the effectiveness of tricortical iliac crest allografts with anterolateral instrumentation after single-stage surgery for thoracic and lumbar spinal tuberculosis (TB). Fifty-six patients with thoracic and lumbar spinal TB underwent single-stage anterior radical debridement, interbody fusion with tricortical iliac crest allografts and anterolateral single rod instrumentation. All patients were given 18 months of antituberculosis chemotherapy. The patients were followed up regularly, and their clinical manifestations, roentgenogram results, erythrocyte sedimentation rate (ESR) and liver function test were the results to be concerned. Radiographs were analysed before surgery, immediately after surgery, and at the final follow-up examination. Mean follow-up period was 37.5 months in 52 patients, and 4 patients were lost to follow-up. No patients had superficial wound infections, and all the incisions healed within 2 weeks. No graft fracture, collapse, or sliding was observed. The average bony fusion time was 10.6 months. Bony fusion was observed in all 52 patients within 18 months. The average degrees of kyphotic correction loss for thoracic and lumbar spine were 6.71° and 2.78° respectively. Although it took a long time to achieve solid fusion, tricortical iliac crest allografts were found to be convenient and safe to be used in spinal TB surgery. They may be effective options for interbody fusion, deformity correction and correction maintenance with anterolateral single rod instrumentation.
Freshwater transport between the Kara, Laptev, and East-Siberian seas
Authors: Osadchiev A. A. , Pisareva M. N. , Spivak E. A. , Shchuka S. A. , Semiletov I. P. 
Published: August 2020

AbstractThe Kara and Laptev seas receive about one half of total freshwater runoff to the Arctic Ocean from the Ob, Yenisei, and Lena rivers. Discharges of these large rivers form freshened surface water masses over wide areas in these seas. These water masses, i.e., the Ob-Yenisei and Lena river plumes, generate an eastward buoyancy boundary current that accounts for the large-scale zonal freshwater transport along the Siberian part in the Arctic Ocean. In this study we investigate spreading of the Ob-Yenisei plume from the Kara Sea to the Laptev Sea through the Vilkitsky Strait and of the Lena plume from the Laptev Sea to the East-Siberian Sea through the Laptev and Sannikov straits during ice-free season. Large horizontal density gradient between freshened plume water and salty ambient sea water is the main driver of these processes, however, their intensity strongly depends on local wind forcing. The Ob-Yenisei plume is spreading to the Laptev Sea in a narrow alongshore current which is induced by strong and long-term southwesterly winds. Under other wind forcing the plume does not reach the Vilkitsky Strait. The Lena plume is almost constantly spreading to the East-Siberian Sea as a large-scale surface water mass which intensity is governed by eastward Ekman transport and is prone to large synoptic variability.
Facial appearance and metabolic health biomarkers in women
Authors: Żelaźniewicz Agnieszka , Nowak Judyta , Łącka Patrycja , Pawłowski Bogusław 
Published: August 2020

AbstractFacial appearance has been suggested to provide an honest cue of an individual’s biological condition. However, there is little direct evidence that facial attractiveness reflects actual health. Here we tested if facial appearance is related with metabolic health biomarkers. Face photographs of 161 healthy, young women (Mage = 28.59, SDage = 2.34) were assessed in terms of perceived attractiveness and health. Metabolic health was evaluated based on levels of markers of lipid and glucose metabolism balance, liver functioning, and inflammation. BMI, testosterone (T), and estradiol (E2) levels were controlled. Facial attractiveness, but not health, was negatively related with lipid profile components detrimental to health (total cholesterol, LDL, triglycerides) but not with relatively protective for health HDL. When controlled for BMI, E2, and T, only the relationship between attractiveness and triglycerides remained significant. Facial appearance was unrelated with glucose metabolism, liver functioning, and inflammatory markers. The results suggest, that for healthy women of reproductive age, such measures as BMI and sex hormone levels may be better predictors of attractiveness, compared to measures of metabolic health. Markers of lipid, glucose homeostasis, liver functioning or low-grade inflammation may be rather indicators of future health, of lesser importance in mating context, thus only modestly reflected in facial appearance.