bluuebunny/crossref_metadata_2025_split huggingface dataset:
Collar Properties and Measurement Time Confer Minimal Bias Overall on Annual Soil Respiration Estimates in a Global Database
Authors: Jian Jinshi , Gough Christopher , Sihi Debjani , Hopple Anya M. , Bond‐Lamberty Ben 
Published: November 2020

AbstractMeasuring the soil‐to‐atmosphere carbon dioxide (CO2) flux (soil respiration, RS) is important to understanding terrestrial carbon balance and to forecasting climate change. Such measurements are frequently made using measurement collars permanently inserted into the soil surface. However, differences in measurement duration and frequency, as well as collar properties, may lead to biases in the estimation of annual RS. Using a newly updated global RS database (SRDB‐V5), we investigated the annual RS bias associated with five methodological factors: collar height, collar coverage area, collar insertion depth, measurement duration, and measurement frequency. We found that annual RS was negatively correlated with collar insertion depth, consistent with the idea that collar insertion cuts roots and thus reduces RS. Annual RS was also negatively related with collar height and collar coverage area, perhaps because uniform head‐space mixing is difficult to achieve in larger volume chambers; however, these effects were quantitatively small (bias of ~2% to 10% of mean RS). We found no correlation of measurement duration or measurement frequency with annual RS. These findings suggest that variation in RS methodology generally introduces minimal bias overall. Therefore, compilations of minimally adjusted annual RS measurements provide a reliable resource for synthesis studies, global annual RS modeling, and investigation of how soil carbon responds to climate change.
Detection of immunogenic cell death and its relevance for cancer therapy
Authors: Fucikova Jitka , Kepp Oliver , Kasikova Lenka , Petroni Giulia , Yamazaki Takahiro , Liu Peng , Zhao Liwei , Spisek Radek , Kroemer Guido , Galluzzi Lorenzo 
Published: November 2020

AbstractChemotherapy, radiation therapy, as well as targeted anticancer agents can induce clinically relevant tumor-targeting immune responses, which critically rely on the antigenicity of malignant cells and their capacity to generate adjuvant signals. In particular, immunogenic cell death (ICD) is accompanied by the exposure and release of numerous damage-associated molecular patterns (DAMPs), which altogether confer a robust adjuvanticity to dying cancer cells, as they favor the recruitment and activation of antigen-presenting cells. ICD-associated DAMPs include surface-exposed calreticulin (CALR) as well as secreted ATP, annexin A1 (ANXA1), type I interferon, and high-mobility group box 1 (HMGB1). Additional hallmarks of ICD encompass the phosphorylation of eukaryotic translation initiation factor 2 subunit-α (EIF2S1, better known as eIF2α), the activation of autophagy, and a global arrest in transcription and translation. Here, we outline methodological approaches for measuring ICD markers in vitro and ex vivo for the discovery of next-generation antineoplastic agents, the development of personalized anticancer regimens, and the identification of optimal therapeutic combinations for the clinical management of cancer.
The dark exciton ground state promotes photon-pair emission in individual perovskite nanocrystals
Authors: Tamarat Philippe , Hou Lei , Trebbia Jean-Baptiste , Swarnkar Abhishek , Biadala Louis , Louyer Yann , Bodnarchuk Maryna I. , Kovalenko Maksym V. , Even Jacky , Lounis Brahim 
Published: November 2020

AbstractCesium lead halide perovskites exhibit outstanding optical and electronic properties for a wide range of applications in optoelectronics and for light-emitting devices. Yet, the physics of the band-edge exciton, whose recombination is at the origin of the photoluminescence, is not elucidated. Here, we unveil the exciton fine structure of individual cesium lead iodide perovskite nanocrystals and demonstrate that it is governed by the electron-hole exchange interaction and nanocrystal shape anisotropy. The lowest-energy exciton state is a long-lived dark singlet state, which promotes the creation of biexcitons at low temperatures and thus correlated photon pairs. These bright quantum emitters in the near-infrared have a photon statistics that can readily be tuned from bunching to antibunching, using magnetic or thermal coupling between dark and bright exciton sublevels.
Essential role of accessory subunit LYRM6 in the mechanism of mitochondrial complex I
Authors: Galemou Yoga Etienne , Parey Kristian , Djurabekova Amina , Haapanen Outi , Siegmund Karin , Zwicker Klaus , Sharma Vivek , Zickermann Volker , Angerer Heike 
Published: November 2020

AbstractRespiratory complex I catalyzes electron transfer from NADH to ubiquinone (Q) coupled to vectorial proton translocation across the inner mitochondrial membrane. Despite recent progress in structure determination of this very large membrane protein complex, the coupling mechanism is a matter of ongoing debate and the function of accessory subunits surrounding the canonical core subunits is essentially unknown. Concerted rearrangements within a cluster of conserved loops of central subunits NDUFS2 (β1-β2S2 loop), ND1 (TMH5-6ND1 loop) and ND3 (TMH1-2ND3 loop) were suggested to be critical for its proton pumping mechanism. Here, we show that stabilization of the TMH1-2ND3 loop by accessory subunit LYRM6 (NDUFA6) is pivotal for energy conversion by mitochondrial complex I. We determined the high-resolution structure of inactive mutant F89ALYRM6 of eukaryotic complex I from the yeast Yarrowia lipolytica and found long-range structural changes affecting the entire loop cluster. In atomistic molecular dynamics simulations of the mutant, we observed conformational transitions in the loop cluster that disrupted a putative pathway for delivery of substrate protons required in Q redox chemistry. Our results elucidate in detail the essential role of accessory subunit LYRM6 for the function of eukaryotic complex I and offer clues on its redox-linked proton pumping mechanism.
Vitamin D metabolites and the gut microbiome in older men
Authors: Thomas Robert L. , Jiang Lingjing , Adams John S. , Xu Zhenjiang Zech , Shen Jian , Janssen Stefan , Ackermann Gail , Vanderschueren Dirk , Pauwels Steven , Knight Rob , Orwoll Eric S. , Kado Deborah M. 
Published: November 2020

AbstractThe vitamin D receptor is highly expressed in the gastrointestinal tract where it transacts gene expression. With current limited understanding of the interactions between the gut microbiome and vitamin D, we conduct a cross-sectional analysis of 567 older men quantifying serum vitamin D metabolites using LC-MSMS and defining stool sub-Operational Taxonomic Units from16S ribosomal RNA gene sequencing data. Faith’s Phylogenetic Diversity and non-redundant covariate analyses reveal that the serum 1,25(OH)2D level explains 5% of variance in α-diversity. In β-diversity analyses using unweighted UniFrac, 1,25(OH)2D is the strongest factor assessed, explaining 2% of variance. Random forest analyses identify 12 taxa, 11 in the phylum Firmicutes, eight of which are positively associated with either 1,25(OH)2D and/or the hormone-to-prohormone [1,25(OH)2D/25(OH)D] “activation ratio.” Men with higher levels of 1,25(OH)2D and higher activation ratios, but not 25(OH)D itself, are more likely to possess butyrate producing bacteria that are associated with better gut microbial health.
The role of mixed vibronic Qy-Qx states in green light absorption of light-harvesting complex II
Authors: Arsenault Eric A. , Yoneda Yusuke , Iwai Masakazu , Niyogi Krishna K. , Fleming Graham R. 
Published: November 2020

AbstractThe importance of green light for driving natural photosynthesis has long been underappreciated, however, under the presence of strong illumination, green light actually drives photosynthesis more efficiently than red light. This green light is absorbed by mixed vibronic Qy-Qx states, arising from chlorophyll (Chl)-Chl interactions, although almost nothing is known about these states. Here, we employ polarization-dependent two-dimensional electronic-vibrational spectroscopy to study the origin and dynamics of the mixed vibronic Qy-Qx states of light-harvesting complex II. We show the states in this region dominantly arise from Chl b and demonstrate how it is possible to distinguish between the degree of vibronic Qy versus Qx character. We find that the dynamics for states of predominately Chl b Qy versus Chl b Qx character are markedly different, as excitation persists for significantly longer in the Qx states and there is an oscillatory component to the Qx dynamics, which is discussed. Our findings demonstrate the central role of electronic-nuclear mixing in efficient light-harvesting and the different functionalities of Chl a and Chl b.
A deep learning diagnostic platform for diffuse large B-cell lymphoma with high accuracy across multiple hospitals
Authors: Li Dongguang , Bledsoe Jacob R. , Zeng Yu , Liu Wei , Hu Yiguo , Bi Ke , Liang Aibin , Li Shaoguang 
Published: November 2020

AbstractDiagnostic histopathology is a gold standard for diagnosing hematopoietic malignancies. Pathologic diagnosis requires labor-intensive reading of a large number of tissue slides with high diagnostic accuracy equal or close to 100 percent to guide treatment options, but this requirement is difficult to meet. Although artificial intelligence (AI) helps to reduce the labor of reading pathologic slides, diagnostic accuracy has not reached a clinically usable level. Establishment of an AI model often demands big datasets and an ability to handle large variations in sample preparation and image collection. Here, we establish a highly accurate deep learning platform, consisting of multiple convolutional neural networks, to classify pathologic images by using smaller datasets. We analyze human diffuse large B-cell lymphoma (DLBCL) and non-DLBCL pathologic images from three hospitals separately using AI models, and obtain a diagnostic rate of close to 100 percent (100% for hospital A, 99.71% for hospital B and 100% for hospital C). The technical variability introduced by slide preparation and image collection reduces AI model performance in cross-hospital tests, but the 100% diagnostic accuracy is maintained after its elimination. It is now clinically practical to utilize deep learning models for diagnosis of DLBCL and ultimately other human hematopoietic malignancies.
Intertwined density waves in a metallic nickelate
Authors: Zhang Junjie , Phelan D. , Botana A. S. , Chen Yu-Sheng , Zheng Hong , Krogstad M. , Wang Suyin Grass , Qiu Yiming , Rodriguez-Rivera J. A. , Osborn R. , Rosenkranz S. , Norman M. R. , Mitchell J. F. 
Published: November 2020

AbstractNickelates are a rich class of materials, ranging from insulating magnets to superconductors. But for stoichiometric materials, insulating behavior is the norm, as for most late transition metal oxides. Notable exceptions are the 3D perovskite LaNiO3, an unconventional paramagnetic metal, and the layered Ruddlesden-Popper phases R4Ni3O10, (R = La, Pr, Nd). The latter are particularly intriguing because they exhibit an unusual metal-to-metal transition. Here, we demonstrate that this transition results from an incommensurate density wave with both charge and magnetic character that lies closer in its behavior to the metallic density wave seen in chromium metal than the insulating stripes typically found in single-layer nickelates like La2-xSrxNiO4. We identify these intertwined density waves as being Fermi surface-driven, revealing a novel ordering mechanism in this nickelate that reflects a coupling among charge, spin, and lattice degrees of freedom that differs not only from the single-layer materials, but from the 3D perovskites as well.
Unraveling the influence of non-fullerene acceptor molecular packing on photovoltaic performance of organic solar cells
Authors: Ye Linglong , Weng Kangkang , Xu Jinqiu , Du Xiaoyan , Chandrabose Sreelakshmi , Chen Kai , Zhou Jiadong , Han Guangchao , Tan Songting , Xie Zengqi , Yi Yuanping , Li Ning , Liu Feng , Hodgkiss Justin M. , Brabec Christoph J. , Sun Yanming 
Published: November 2020

AbstractIn non-fullerene organic solar cells, the long-range structure ordering induced by end-group π–π stacking of fused-ring non-fullerene acceptors is considered as the critical factor in realizing efficient charge transport and high power conversion efficiency. Here, we demonstrate that side-chain engineering of non-fullerene acceptors could drive the fused-ring backbone assembly from a π–π stacking mode to an intermixed packing mode, and to a non-stacking mode to refine its solid-state properties. Different from the above-mentioned understanding, we find that close atom contacts in a non-stacking mode can form efficient charge transport pathway through close side atom interactions. The intermixed solid-state packing motif in active layers could enable organic solar cells with superior efficiency and reduced non-radiative recombination loss compared with devices based on molecules with the classic end-group π–π stacking mode. Our observations open a new avenue in material design that endows better photovoltaic performance.
Empowering alcohols as carbonyl surrogates for Grignard-type reactions
Authors: Li Chen-Chen , Wang Haining , Sim Malcolm M. , Qiu Zihang , Chen Zhang-Pei , Khaliullin Rustam Z. , Li Chao-Jun 
Published: November 2020

AbstractThe Grignard reaction is a fundamental tool for constructing C-C bonds. Although it is widely used in synthetic chemistry, it is normally applied in early stage functionalizations owing to poor functional group tolerance and less availability of carbonyls at late stages of molecular modifications. Herein, we report a Grignard-type reaction with alcohols as carbonyl surrogates by using a ruthenium(II) PNP-pincer complex as catalyst. This transformation proceeds via a carbonyl intermediate generated in situ from the dehydrogenation of alcohols, which is followed by a Grignard-type reaction with a hydrazone carbanion to form a C-C bond. The reaction conditions are mild and can tolerate a broad range of substrates. Moreover, no oxidant is involved during the entire transformation, with only H2and N2being generated as byproducts. This reaction opens up a new avenue for Grignard-type reactions by enabling the use of naturally abundant alcohols as starting materials without the need for pre-synthesizing carbonyls.
Multi-directionally wrinkle-able textile OLEDs for clothing-type displays
Authors: Choi Seungyeop , Jo Woosung , Jeon Yongmin , Kwon Seonil , Kwon Jeong Hyun , Son Young Hyun , Kim Junmo , Park Jun Hong , Kim Hyuncheol , Lee Ho Seung , Nam Minwoo , Jeong Eun Gyo , Bin Shin Jeong , Kim Taek-Soo , Choi Kyung Cheol 
Published: November 2020

AbstractA clothing-type wearable display can be utilized in fashion, bio-healthcare, and safety industries as well as smart textiles for the internet of things (IoTs) and wearable devices. In response to this trend, we demonstrate a textile display that can endure the active movements of a human body. It can be applied to any kind of textile, and is durable against conditions such as rain, sweat, and washing. As a key technology for realizing the multi-directional wrinkle-able textile display, we fabricated a stress-lowering textile platform with an ultrathin planarization layer replicated from the flat surface of glass. An elastomeric strain buffer for reducing mechanical stress is also inserted into the textile platform. Here, organic light-emitting diodes (OLEDs) with red, green and blue color, thin film transistors (TFTs) fabricated at a low temperature below 150 °C, and a washable encapsulation layer blocking both gas and liquid were demonstrated on the textile platform.
Australian long-finned pilot whales (Globicephala melas) emit stereotypical, variable, biphonic, multi-component, and sequenced vocalisations, similar to those recorded in the northern hemisphere
Authors: Courts Rachael , Erbe Christine , Wellard Rebecca , Boisseau Oliver , Jenner K. Curt , Jenner Micheline-N. 
Published: November 2020

AbstractWhile in the northern hemisphere, many studies have been conducted on the vocal repertoire of long-finned pilot whales (Globicephala melas), no such study has been conducted in the southern hemisphere. Presented here, is the first study on the vocalisations of long-finned pilot whales along the southern coast of mainland Australia. Multiple measures were taken of 2028 vocalisations recorded over five years in several locations. These vocalisations included tonal sounds with and without overtones, sounds of burst-pulse character, graded sounds, biphonations, and calls of multiple components. Vocalisations were further categorised based on spectrographic features into 18 contour classes. Altogether, vocalisations ranged from approximately 200 Hz to 25 kHz in fundamental frequency and from 0.03 s to 2.07 s in duration. These measures compared well with those from northern hemisphere pilot whales. Some call types were almost identical to northern hemisphere vocalisations, even though the geographic ranges of the two populations are far apart. Other call types were unique to Australia. Striking similarities with calls of short-finned pilot whales (Globicephala macrorhynchus) and sometimes sympatric killer whales (Orcinus orca) were also found. Theories for call convergence and divergence are discussed.
The implications of thumb movements for Neanderthal and modern human manipulation
Authors: Bardo Ameline , Moncel Marie-Hélène , Dunmore Christopher J. , Kivell Tracy L. , Pouydebat Emmanuelle , Cornette Raphaël 
Published: November 2020

AbstractMuch research has debated the technological abilities of Neanderthals relative to those of early modern humans, with a particular focus on subtle differences in thumb morphology and how this may reflect differences in manipulative behaviors in these two species. Here, we provide a novel perspective on this debate through a 3D geometric morphometric analysis of shape covariation between the trapezial and proximal first metacarpal articular surfaces of Neanderthals (Homo neanderthalensis) in comparison to early and recent humans (Homo sapiens). Results show a distinct pattern of shape covariation in Neanderthals, consistent with more extended and adducted thumb postures that may reflect habitual use of grips commonly used for hafted tools. Both Neanderthals and recent humans demonstrate high intraspecific variation in shape covariation. This intraspecific variation is likely the result of genetic and/or developmental differences, but may also reflect, in part, differing functional requirements imposed by the use of varied tool-kits. These results underscore the importance of holistic joint shape analysis for understanding the functional capabilities and evolution of the modern human thumb.
Optical imaging of muons
Authors: Yamamoto Seiichi , Ninomiya Kazuhiko , Kawamura Naritoshi , Hirano Yoshiyuki 
Published: November 2020

AbstractOptical imaging of particle beams is a promising method for range and width estimations. However it was not clear that optical imaging was possible for muons. To clarify this, we conducted optical imaging of muons, since high-intensity muons are now available at J-PARC. We irradiated positive muons with different momenta to water or plastic scintillator block, and imaged using a charge-coupled device (CCD) camera during irradiation. The water and plastic scintillator block produced quite different images. The images of water during irradiation of muons produced elliptical shape light distribution at the end of the ranges due to Cherenkov-light from the positrons produced by positive muon decay, while, for the plastic scintillator block, we measured images similar to the dose distributions. We were able to estimate the ranges of muons as well as the measurement of the asymmetry of the direction of the positron emission by the muon decays from the optical images of the water, although the measured ranges were 4 mm to 5 mm larger than the calculated values. The ranges and widths of the beams could also be estimated from the optical images of the plastic scintillator block. We confirmed that optical imaging of muons was possible and is a promising method for the quality assessment, research of muons, and the future muon radiotherapy.
Facial expressions contribute more than body movements to conversational outcomes in avatar-mediated virtual environments
Authors: Oh Kruzic Catherine , Kruzic David , Herrera Fernanda , Bailenson Jeremy 
Published: November 2020

AbstractThis study focuses on the individual and joint contributions of two nonverbal channels (i.e., face and upper body) in avatar mediated-virtual environments. 140 dyads were randomly assigned to communicate with each other via platforms that differentially activated or deactivated facial and bodily nonverbal cues. The availability of facial expressions had a positive effect on interpersonal outcomes. More specifically, dyads that were able to see their partner’s facial movements mapped onto their avatars liked each other more, formed more accurate impressions about their partners, and described their interaction experiences more positively compared to those unable to see facial movements. However, the latter was only true when their partner’s bodily gestures were also available and not when only facial movements were available. Dyads showed greater nonverbal synchrony when they could see their partner’s bodily and facial movements. This study also employed machine learning to explore whether nonverbal cues could predict interpersonal attraction. These classifiers predicted high and low interpersonal attraction at an accuracy rate of 65%. These findings highlight the relative significance of facial cues compared to bodily cues on interpersonal outcomes in virtual environments and lend insight into the potential of automatically tracked nonverbal cues to predict interpersonal attitudes.
No relationship between the acromiohumeral distance and pain in adults with subacromial pain syndrome: a systematic review and meta-analysis
Authors: Park Soo Whan , Chen Yuan Tai , Thompson Lindsay , Kjoenoe Andreas , Juul-Kristensen Birgit , Cavalheri Vinicius , McKenna Leanda 
Published: November 2020

AbstractTo determine whether subacromial space (i.e. acromiohumeral distance; AHD, and/or occupation ratio percentage) differs between people with subacromial pain syndrome (SAPS) and those without. To investigate whether there is a correlation between subacromial space and pain or disability in adults with SAPS and whether temporal changes in pain or disability are accompanied by changes in subacromial space. Systematic review and meta-analysis. Fifteen studies with a total of 775 participants were included. Twelve studies were of high quality and three studies were of moderate quality using the modified Black and Downs checklist. There was no between group difference in AHD in neutral shoulder position (mean difference [95% CI] 0.28 [−0.13 to 0.69] mm), shoulder abduction at 45° (−0.02 [−0.99 to 0.96] mm) or 60° (−0.20 [−0.61 to 0.20] mm). Compared to the control group, a greater occupation ratio in neutral shoulder position was demonstrated in participants with SAPS (5.14 [1.87 to 8.4] %). There was no consistent pattern regarding the correlation between AHD and pain or disability in participants with SAPS, and no consistent increase in subacromial space with improvement in pain or disability over time. The results suggest that surgical (e.g. sub-acromial decompression) and non-surgical (e.g. manual therapy, taping, stretching and strengthening) management of subacromial pain syndrome should not focus solely on addressing a potential decrease in subacromial space, but also on the importance of other biopsychosocial factors.