bluuebunny/crossref_metadata_2025_split huggingface dataset:
SIRT1 accelerates the progression of activity-based anorexia
Authors: Robinette Timothy M. , Nicholatos Justin W. , Francisco Adam B. , Brooks Kayla E. , Diao Rachel Y. , Sorbi Sandro , Ricca Valdo , Nacmias Benedetta , Brieño-Enríquez Miguel A. , Libert Sergiy 
Published: June 2020

AbstractFood consumption is fundamental for life, and eating disorders often result in devastating or life-threatening conditions. Anorexia nervosa (AN) is characterized by a persistent restriction of energy intake, leading to lowered body weight, constant fear of gaining weight, and psychological disturbances of body perception. Herein, we demonstrate that SIRT1 inhibition, both genetically and pharmacologically, delays the onset and progression of AN behaviors in activity-based anorexia (ABA) models, while SIRT1 activation accelerates ABA phenotypes. Mechanistically, we suggest that SIRT1 promotes progression of ABA, in part through its interaction with NRF1, leading to suppression of a NMDA receptor subunit Grin2A. Our results suggest that AN may arise from pathological positive feedback loops: voluntary food restriction activates SIRT1, promoting anxiety, hyperactivity, and addiction to starvation, exacerbating the dieting and exercising, thus further activating SIRT1. We propose SIRT1 inhibition can break this cycle and provide a potential therapy for individuals suffering from AN.
Liquid-liquid phase separation induces pathogenic tau conformations in vitro
Authors: Kanaan Nicholas M. , Hamel Chelsey , Grabinski Tessa , Combs Benjamin 
Published: June 2020

AbstractFormation of membrane-less organelles via liquid-liquid phase separation is one way cells meet the biological requirement for spatiotemporal regulation of cellular components and reactions. Recently, tau, a protein known for its involvement in Alzheimer’s disease and other tauopathies, was found to undergo liquid–liquid phase separation making it one of several proteins associated with neurodegenerative diseases to do so. Here, we demonstrate that tau forms dynamic liquid droplets in vitro at physiological protein levels upon molecular crowding in buffers that resemble physiological conditions. Tau droplet formation is significantly enhanced by disease-associated modifications, including the AT8 phospho-epitope and the P301L tau mutation linked to an inherited tauopathy. Moreover, tau droplet dynamics are significantly reduced by these modified forms of tau. Extended phase separation promoted a time-dependent adoption of toxic conformations and oligomerization, but not filamentous aggregation. P301L tau protein showed the greatest oligomer formation following extended phase separation. These findings suggest that phase separation of tau may facilitate the formation of non-filamentous pathogenic tau conformations.
Invasion of vaginal epithelial cells by uropathogenic Escherichia coli
Authors: Brannon John R. , Dunigan Taryn L. , Beebout Connor J. , Ross Tamia , Wiebe Michelle A. , Reynolds William S. , Hadjifrangiskou Maria 
Published: June 2020

AbstractHost-associated reservoirs account for the majority of recurrent and oftentimes recalcitrant infections. Previous studies established that uropathogenic E. coli – the primary cause of urinary tract infections (UTIs) – can adhere to vaginal epithelial cells preceding UTI. Here, we demonstrate that diverse urinary E. coli isolates not only adhere to, but also invade vaginal cells. Intracellular colonization of the vaginal epithelium is detected in acute and chronic murine UTI models indicating the ability of E. coli to reside in the vagina following UTI. Conversely, in a vaginal colonization model, E. coli are detected inside vaginal cells and the urinary tract, indicating that vaginal colonization can seed the bladder. More critically, bacteria are identified inside vaginal cells from clinical samples from women with a history of recurrent UTI. These findings suggest that E. coli can establish a vaginal intracellular reservoir, where it may reside safely from extracellular stressors prior to causing an ascending infection.
Emergent constraints on future projections of the western North Pacific Subtropical High
Authors: Chen Xiaolong , Zhou Tianjun , Wu Peili , Guo Zhun , Wang Minghuai 
Published: June 2020

AbstractThe western North Pacific Subtropical High (WNPSH) is a key circulation system controlling the summer monsoon and typhoon activities over the western Pacific, but future projections of its changes remain hugely uncertain. Here we find two leading modes that account for nearly 80% intermodel spread in its future projection under a high emission scenario. They are linked to a cold-tongue-like bias in the central-eastern tropical Pacific and a warm bias beneath the marine stratocumulus, respectively. Observational constraints using sea surface temperature patterns reduce the uncertainties by 45% and indicate a robust intensification of the WNPSH due to suppressed warming in the western Pacific and enhanced land-sea thermal contrast, leading to 28% more rainfall projected in East China and 36% less rainfall in Southeast Asia than suggested by the multi-model mean. The intensification of the WNPSH implies more future monsoon rainfall and heatwaves but less typhoon landfalls over East Asia.
REV7 is required for processing AID initiated DNA lesions in activated B cells
Authors: Yang Dingpeng , Sun Ying , Chen Jingjing , Zhang Ying , Fan Shuangshuang , Huang Min , Xie Xia , Cai Yanni , Shang Yafang , Gui Tuantuan , Sun Liming , Hu Jiazhi , Dong Junchao , Yeap Leng-Siew , Wang Xiaoming , Xiao Wei , Meng Fei-Long 
Published: June 2020

AbstractActivation-induced cytidine deaminase (AID) initiates both antibody class switch recombination (CSR) and somatic hypermutation (SHM) in antibody diversification. DNA double-strand break response (DSBR) factors promote rearrangement in CSR, while translesion synthesis (TLS) polymerases generate mutations in SHM. REV7, a component of TLS polymerase zeta, is also a downstream effector of 53BP1-RIF1 DSBR pathway. Here, we study the multi-functions of REV7 and find that REV7 is required for the B cell survival upon AID-deamination, which is independent of its roles in DSBR, G2/M transition or REV1-mediated TLS. The cell death in REV7-deficient activated B cells can be fully rescued by AID-deficiency in vivo. We further identify that REV7-depedent TLS across UNG-processed apurinic/apyrimidinic sites is required for cell survival upon AID/APOBEC deamination. This study dissects the multiple roles of Rev7 in antibody diversification, and discovers that TLS is not only required for sequence diversification but also B cell survival upon AID-initiated lesions.
The Mi-2 nucleosome remodeler and the Rpd3 histone deacetylase are involved in piRNA-guided heterochromatin formation
Authors: Mugat Bruno , Nicot Simon , Varela-Chavez Carolina , Jourdan Christophe , Sato Kaoru , Basyuk Eugenia , Juge François , Siomi Mikiko C. , Pélisson Alain , Chambeyron Séverine 
Published: June 2020

AbstractIn eukaryotes, trimethylation of lysine 9 on histone H3 (H3K9) is associated with transcriptional silencing of transposable elements (TEs). In drosophila ovaries, this heterochromatic repressive mark is thought to be deposited by SetDB1 on TE genomic loci after the initial recognition of nascent transcripts by PIWI-interacting RNAs (piRNAs) loaded on the Piwi protein. Here, we show that the nucleosome remodeler Mi-2, in complex with its partner MEP-1, forms a subunit that is transiently associated, in a MEP-1 C-terminus-dependent manner, with known Piwi interactors, including a recently reported SUMO ligase, Su(var)2-10. Together with the histone deacetylase Rpd3, this module is involved in the piRNA-dependent TE silencing, correlated with H3K9 deacetylation and trimethylation. Therefore, drosophila piRNA-mediated transcriptional silencing involves three epigenetic effectors, a remodeler, Mi-2, an eraser, Rpd3 and a writer, SetDB1, in addition to the Su(var)2-10 SUMO ligase.
The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Authors: Bauriedl Saskia , Gerovac Milan , Heidrich Nadja , Bischler Thorsten , Barquist Lars , Vogel Jörg , Schoen Christoph 
Published: June 2020

AbstractFinO-domain proteins are a widespread family of bacterial RNA-binding proteins with regulatory functions. Their target spectrum ranges from a single RNA pair, in the case of plasmid-encoded FinO, to global RNA regulons, as with enterobacterial ProQ. To assess whether the FinO domain itself is intrinsically selective or promiscuous, we determine in vivo targets of Neisseria meningitidis, which consists of solely a FinO domain. UV-CLIP-seq identifies associations with 16 small non-coding sRNAs and 166 mRNAs. Meningococcal ProQ predominantly binds to highly structured regions and generally acts to stabilize its RNA targets. Loss of ProQ alters transcript levels of >250 genes, demonstrating that this minimal ProQ protein impacts gene expression globally. Phenotypic analyses indicate that ProQ promotes oxidative stress resistance and DNA damage repair. We conclude that FinO domain proteins recognize some abundant type of RNA shape and evolve RNA binding selectivity through acquisition of additional regions that constrain target recognition.
Corrosion interactions between stainless steel and lead vanado-iodoapatite nuclear waste form part II
Authors: Yao Tiankai , Guo Xiaolei , Lei Penghui , Wang Yachun , Frankel Gerald S. , Lian Jie 
Published: June 2020

AbstractThis paper studied the release of iodine from lead vanado-iodoapatite (I-APT, Pb9.85(VO4)6I1.7), a potential nuclear waste form for the radioactive waste element of I-129, which can be enhanced when crevice corrosion of stainless steel (SS) occurring nearby. Reference corrosion studies of I-APT were performed in different bulk solutions including DI water, 0.6 M and 6 M NaCl, and 0.1 M HNO3 without metal crevice corrosion interactions. The localized enrichment of Cl−, one of the major consequences of SS crevice corrosion, was found to be the decisive factor that led to the enhanced release of iodine. A surface alteration layer consisting of a mixture of nanocrystalline I-APT and Cl-rich apatite (Cl-APT) formed on I-APT surface. Meanwhile, large Cl-APT crystals formed at the crevice mouth on the I-APT surface. This study reveals a new near-field corrosion mechanism for ceramic waste forms when they are exposed to aggressive local corrosive conditions created by the electrochemical reactions of nearby metals. The insight gained in this study could be beneficial for a more accurate prediction of waste form degradation.
Natural recharge transcends anthropogenic forcing that influences arsenic vulnerability of the quaternary alluviums of the Mid-Gangetic Plain
Authors: Singh Ashwin , Patel Arbind Kumar , Deka Jyoti Prakash , Kumar Manish 
Published: June 2020

AbstractWe evaluated the anthropogenic forcing and exceedance probability of arsenic vulnerability in the Quaternary Alluviums of the Mid-Gangetic Plain through the coupled application of hydrogeochemical analyses, inverse modelling, probability analyses, kriging, bivariate and multivariate statistical analysis (MVA). Fifty-seven groundwater samples (total 171) each were collected during the pre-monsoon (April 2015), monsoon (July 2015) and post-monsoon (January 2016). Seasonal cyclicity of ion exchange and reverse ion exchange was observed, with the former being common during pre-monsoon while the latter was dominant during post-monsoon. PHREEQC modelling showed the involvement of the agrochemicals such as calcium nitrate and calcium phosphate and other isolated incidences of chemical usage like bleaching powder as well as the probability of wet deposition of the anions like SO42− and NO3−. Kriging-based arsenic mapping revealed that rainfall recharge-led dilution plays the most dominant role in its mobilization. Owing to natural recharge in the alluvium plain, the exceedance probability of arsenic concentration above 5 μg L−1 falls drastically from more than 0.8 in the pre-monsoon to 0.5 during the post-monsoon. Study implies that pre-monsoon pumping of groundwater must be regulated in combination with proper disposal of pH and ORP affecting chemicals so that the high natural recharge should not significantly induce arsenic mobilization. Further, we recommend that vulnerability estimation should not be based solely on the present scenarios but must include the features of probable exceedance and saturation status of groundwater in this belt. We put forward a comprehensive model to explain the operative processes governing arsenic mobilization.
A harmonized global nighttime light dataset 1992–2018
Authors: Li Xuecao , Zhou Yuyu , Zhao Min , Zhao Xia 
Published: June 2020

AbstractNighttime light (NTL) data from the Defense Meteorological Satellite Program (DMSP)/Operational Linescan System (OLS) and the Visible Infrared Imaging Radiometer Suite (VIIRS) on the Suomi National Polar-orbiting Partnership satellite provide a great opportunity for monitoring human activities from regional to global scales. Despite the valuable records of nightscape from DMSP (1992–2013) and VIIRS (2012–2018), the potential of the historical archive of NTL observations has not been fully explored because of the severe inconsistency between DMSP and VIIRS. In this study, we generated an integrated and consistent NTL dataset at the global scale by harmonizing the inter-calibrated NTL observations from the DMSP data and the simulated DMSP-like NTL observations from the VIIRS data. The generated global DMSP NTL time-series data (1992–2018) show consistent temporal trends. This temporally extended DMSP NTL dataset provides valuable support for various studies related to human activities such as electricity consumption and urban extent dynamics.
Prognosis of prostate cancer and bone metastasis pattern of patients: a SEER-based study and a local hospital based study from China
Authors: Liu Dongyu , Kuai Yue , Zhu Ruohui , Zhou Chenhe , Tao Yiqing , Han Weidong , Chen Qixin 
Published: June 2020

AbstractProstate cancer (PCa) is the leading cause of cancer-related death among men worldwide. Knowledge of the prognostic factors of PCa and the bone metastasis pattern of patients would be helpful for patients and doctors. The data of 177,255 patients with prostate cancer diagnosed between 2010 and 2013 with at least five years of follow-up were retrieved from the Surveillance, Epidemiology, and End Results (SEER) database. Multivariate Cox regression analysis was used to determine the predictive value of patients’ characteristics for survival after adjusting for other variates. Multivariate logistic regression analysis was used to evaluate the odds ratio of bone metastasis in PCa patients. The predictive value of age, race, marital status, and tumor characteristics were compared. The survival of patients with different socioeconomic statuses and bone metastasis statuses was compared by Kaplan–Meier analysis. A total of 1,335 patients with prostate cancer diagnosed between 2009 and 2015 were enrolled from the Second Affiliated Hospital of Zhejiang University School of Medicine. The survival of patients with different prostate-specific antigen (PSA) levels, Gleason scores, marital statuses and bone metastasis statuses was compared by Kaplan-Meier analysis. In SEER database, 96.74% of patients were 50 years of age or older. Multivariate Cox analysis revealed that for PCa patients, age at presentation, older age, single marital status, lower socioeconomic status, higher PSA level, T1 and N0 stage, and bone metastasis were independent risk factors for increased mortality. Multivariate logistic regression analysis revealed that patients who were married, were living in urban areas, had lower PSA levels, underwent surgery, and radiation had lower OR factors for bone metastasis. Asian or Pacific Islander, better socioeconomic status, lived in urban areas, married marital status, lower PSA levels and lower Gleason scores were better prognostic factors in PCa. Additionally, patients with single or divorced marital status, who were living in rural places had higher PSA levels, and T1 and N0 stages have a high OR for bone metastasis.
Peppermint essential oil inhibits Drosophila suzukii emergence but reduces Pachycrepoideus vindemmiae parasitism rates
Authors: Gowton Chelsea Megan , Reut Michał , Carrillo Juli 
Published: June 2020

AbstractSpotted Wing Drosophila (Drosophila suzukii; Matsumura) is an invasive fruit fly with the ability to oviposit in a broad range of agriculturally valuable fruits. Volatile organic compounds (VOCs) produced by botanical oils may reduce D. suzukii’s attraction to hosts and decrease survival, but it is unknown whether their efficacy varies across D. suzukii life stages or affects the survival and success of higher trophic levels. Through a series of laboratory bioassays, we evaluated the effects of peppermint (Mentha arvensis L.) oil produced VOCs on D. suzukii survival and the survival of and parasitism rates by a pupal parasitoid wasp, Pachycrepoideus vindemmiae (Rondani). First, we determined whether fumigation with peppermint oil VOCs at the pupal stage reduced adult emergence, and whether this depended on environmental conditions (i.e. soil moisture). Second, we evaluated whether fumigation with peppermint oil VOCs reduced or enhanced parasitism by the pupal parasitoid and whether this depended on the timing of peppermint oil VOC exposure (i.e. before, during, or after parasitoid access). Fumigation with VOCs of 4.5 mg of peppermint oil reduced D. suzukii emergence under moist soil conditions but dry soil had a similar effect on reducing adult emergence as peppermint oil presence. Peppermint oil VOC fumigation was toxic to adult P. vindemmiae, but developing P. vindemmiae were unaffected by peppermint oil VOC fumigation. Using peppermint essential oil as a fumigant may reduce D. suzukii emergence from the pupal stage. However, this could negatively impact P. vindemmiae dependent on the timing of application.
Sagittal en bloc resection of primary tumors in the thoracic and lumbar spine: feasibility, safety and outcome
Authors: Dang Lei , Liu Zhongjun , Liu Xiaoguang , Jiang Liang , Yu Miao , Wu Fengliang , Wei Feng 
Published: June 2020

AbstractThis study is to test feasibility, safety and the outcome of sagittal en bloc resection of paravertebral primary tumors in the thoracic and the lumbar spine. Sagittal en bloc resection was planned based on WBB classification and performed via combined anterior-posterior or anterior-posterior-lateral approach in 9 consecutive patients with aggressive benign or malignant paravertebral primary tumors in the thoracic and lumbar spine. Surgical margins were evaluated both radiologically and histopathologically. Follow-up data regarding survival rate, local control, morbidity, hardware failure and postoperative function were collected at around 2 years after surgery. En bloc resection was achieved in all patient with wide margin in 7/9 patients, marginal and intralesional margin in 2/9 patients. Survival rate and local control rate were 100%. There were 4/9 cases of major complications and 2/9 cases of minor complications with an overall morbidity rate of 67% (6/9). All but one patient with intraoperative spinal cord injury were free of neurological deficits and fully mobile in absence of any indication of hardware failure. With a careful choice of surgical procedure, sagittal en bloc resection of paravertebral primary tumor in the thoracic and lumbar spine is feasible, safe and effective.
Integrative description of a new Dactylobiotus (Eutardigrada: Parachela) from Antarctica that reveals an intraspecific variation in tardigrade egg morphology
Authors: Kihm Ji-Hoon , Kim Sanghee , McInnes Sandra J. , Zawierucha Krzysztof , Rho Hyun Soo , Kang Pilmo , Park Tae-Yoon S. 
Published: June 2020

AbstractTardigrades constitute one of the most important group in the challenging Antarctic terrestrial ecosystem. Living in various habitats, tardigrades play major roles as consumers and decomposers in the trophic networks of Antarctic terrestrial and freshwater environments; yet we still know little about their biodiversity. The Eutardigrada is a species rich class, for which the eggshell morphology is one of the key morphological characters. Tardigrade egg morphology shows a diverse appearance, and it is known that, despite rare, intraspecific variation is caused by seasonality, epigenetics, and external environmental conditions. Here we reportDactylobiotus ovimutanssp. nov. from King George Island, Antarctica. Interestingly, we observed a range of eggshell morphologies from the new species, although the population was cultured under controlled laboratory condition. Thus, seasonality, environmental conditions, and food source are eliminated, leaving an epigenetic factor as a main cause for variability in this case.
Enhancement of gene expression noise from transcription factor binding to genomic decoy sites
Authors: Dey Supravat , Soltani Mohammad , Singh Abhyudai 
Published: June 2020

AbstractThe genome contains several high-affinity non-functional binding sites for transcription factors (TFs) creating a hidden and unexplored layer of gene regulation. We investigate the role of such “decoy sites” in controlling noise (random fluctuations) in the level of a TF that is synthesized in stochastic bursts. Prior studies have assumed that decoy-bound TFs are protected from degradation, and in this case decoys function to buffer noise. Relaxing this assumption to consider arbitrary degradation rates for both bound/unbound TF states, we find rich noise behaviors. For low-affinity decoys, noise in the level of unbound TF always monotonically decreases to the Poisson limit with increasing decoy numbers. In contrast, for high-affinity decoys, noise levels first increase with increasing decoy numbers, before decreasing back to the Poisson limit. Interestingly, while protection of bound TFs from degradation slows the time-scale of fluctuations in the unbound TF levels, the decay of bound TFs leads to faster fluctuations and smaller noise propagation to downstream target proteins. In summary, our analysis reveals stochastic dynamics emerging from nonspecific binding of TFs and highlights the dual role of decoys as attenuators or amplifiers of gene expression noise depending on their binding affinity and stability of the bound TF.
Impact of pemetrexed chemotherapy on the gut microbiota and intestinal inflammation of patient-lung-derived tumor xenograft (PDX) mouse models
Authors: Pensec Cindy , Gillaizeau Florence , Guenot Dominique , Bessard Anne , Carton Thomas , Leuillet Sébastien , Campone Mario , Neunlist Michel , Blottière Hervé M. , Le Vacon Françoise 
Published: June 2020

AbstractChemotherapy remains the gold standard for advanced cancer. Pemetrexed, a chemotherapeutic agent used in non-small cell lung cancer, can induce significant side effects in patients. Although microbiota’s role in the efficacy and/or toxicity of chemotherapy agents has been demonstrated, the impacts of pemetrexed on the gut microbiota and on gastrointestinal inflammation remain unknown. The objective of this study was to evaluate the impact of pemetrexed and the tumor graft on the gut microbiota composition in immunodeficient mice. The faecal microbiota composition was studied with metabarcoding before, 24-h and one week after treatment. The colon epithelial barrier integrity was evaluated by histological examination, intestinal permeability measurement, and selected cytokines quantification. The tumor graft induced some variations in the microbiota composition. Pemetrexed further increased the relative abundance of Enterobacteriaceae and 3 families from the Firmicutes phylum: Enterococcaceae, Lactobacillaceae and Streptococcaceae. Pemetrexed also significantly altered the epithelial barrier integrity, which was associated with early inflammation. This pilot study shows that the association of a lung tumor graft with pemetrexed causes an alteration in the microbiota composition. Such information increases our knowledge about the impact of chemotherapy on the microbiota, which could help to minimize side effects and improve therapeutic effectiveness in the future.