bluuebunny/crossref_metadata_2025_split huggingface dataset:
Development of a Staphylococcus aureus reporter strain with click beetle red luciferase for enhanced in vivo imaging of experimental bacteremia and mixed infections
Authors: Miller Robert J. , Crosby Heidi A. , Schilcher Katrin , Wang Yu , Ortines Roger V. , Mazhar Momina , Dikeman Dustin A. , Pinsker Bret L. , Brown Isabelle D. , Joyce Daniel P. , Zhang Jeffrey , Archer Nathan K. , Liu Haiyun , Alphonse Martin P. , Czupryna Julie , Anderson William R. , Bernthal Nicholas M. , Fortuno-Miranda Lea , Bulte Jeff W. M. , Francis Kevin P. , Horswill Alexander R. , Miller Lloyd S. 
Published: November 2019

AbstractIn vivo bioluminescence imaging has been used to monitor Staphylococcus aureus infections in preclinical models by employing bacterial reporter strains possessing a modified lux operon from Photorhabdus luminescens. However, the relatively short emission wavelength of lux (peak 490 nm) has limited tissue penetration. To overcome this limitation, the gene for the click beetle (Pyrophorus plagiophtalamus) red luciferase (luc) (with a longer >600 emission wavelength), was introduced singly and in combination with the lux operon into a methicillin-resistant S. aureus strain. After administration of the substrate D-luciferin, the luc bioluminescent signal was substantially greater than the lux signal in vitro. The luc signal had enhanced tissue penetration and improved anatomical co-registration with infected internal organs compared with the lux signal in a mouse model of S. aureus bacteremia with a sensitivity of approximately 3 × 104 CFU from the kidneys. Finally, in an in vivo mixed bacterial wound infection mouse model, S. aureus luc signals could be spectrally unmixed from Pseudomonas aeruginosa lux signals to noninvasively monitor the bacterial burden of both strains. Therefore, the S. aureus luc reporter may provide a technological advance for monitoring invasive organ dissemination during S. aureus bacteremia and for studying bacterial dynamics during mixed infections.
Social defeat stress-specific increase in c-Fos expression in the extended amygdala in mice: Involvement of dopamine D1 receptor in the medial prefrontal cortex
Authors: Numa Chisato , Nagai Hirotaka , Taniguchi Masayuki , Nagai Midori , Shinohara Ryota , Furuyashiki Tomoyuki 
Published: November 2019

AbstractWe recently reported that dopamine D1 receptor in the medial prefrontal cortex (mPFC) is activated by subthreshold social defeat stress and suppresses the induction of depressive-like behavior in mice. However, which mPFC projection(s) mediates this antidepressant-like effect remains poorly understood. Here we show that social defeat stress specifically increased c-Fos expression, a marker for neuronal activity, in distinct brain regions involved in emotional regulation, relative to novelty-induced exploration. Among these brain areas, D1 knockdown in the mPFC decreased social defeat stress-induced c-Fos expression in the interstitial nucleus of the posterior limb of the anterior commissure (IPAC), a subregion of the extended amygdala. Using retrograde adeno-associated virus vectors and transgenic mice expressing Cre recombinase under the D1 promoter, we also found that D1-expressing deep-layer pyramidal neurons in the mPFC send direct projections to the IPAC. These findings indicate that social defeat stress specifically activates neurons in distinct brain areas, among which the IPAC is regulated by dopamine D1 receptor in the mPFC perhaps through direct projections. Thus, this study provides hints toward identifying neural circuits that underlie antidepressant-like effects of stress-induced dopamine D1 receptor signaling in the mPFC.
Insect larvae, Hermetia illucens in poultry by-product meal for barramundi, Lates calcarifer modulates histomorphology, immunity and resistance to Vibrio harveyi
Authors: Chaklader Md Reaz , Siddik Muhammad A. B. , Fotedar Ravi , Howieson Janet 
Published: November 2019

AbstractThis study investigated the effects of replacement of fishmeal (FM) with poultry by-product (PBM) protein, supplemented with black soldier fly, Hermetia illucens (HI) larvae on growth, histomormhology, immunity and resistance to Vibrio harveyi in juvenile barramundi. Two hundred and twenty five barramundi averaging 3.51 ± 0.03 g were randomly allocated into three groups and fed isonitrogenous and isocalorific diets containing different levels of PBM supplemented with HI as follows: Control (FM based diet), 45PBM + HI (45% PBM supplemented with 10% HI), and 90PBM + HI (90% PBM supplemented with 10% HI) for 6 weeks. Results showed that dietary inclusion of 45PBM + HI significantly improved the growth performance than control whereas growth inhibition occurred in the 90PBM + HI. The 45PBM + HI groups demonstrated significant increases in histometric measurements (villus and enterocyte width, and microvilli height) and acidic mucins. The impaired growth in 90PBM + HI groups was further associated with multifocal necrosis in the liver, an upregulation of the stress related genes (HSP70 and HSP90) and increase in the levels of liver enzymes. When 45PBM + HI was fed, survival against V. harveyi increased significantly and also an increase in serum immunity and immune-related genes in the head kidney was observed after infection.
Spatial distribution of decadal ice-thickness change and glacier stored water loss in the Upper Ganga basin, India during 2000–2014
Authors: Bandyopadhyay Debmita , Singh Gulab , Kulkarni Anil V. 
Published: November 2019

AbstractHimalayan glaciers have long been the focus of glaciologists across the world while trying to understand the contrasting patterns of elevation and mass changes. However, with limited number of ground observations, a comprehensive assessment of mass balance on a regional scale still remains elusive. Using the synoptic coverage of remote sensing data, we estimate a detailed spatial variation of glacier ice thickness change in the Central Himalaya of Uttarakhand using geodetic method, on a catchment scale. High resolution TerraSAR-X/TanDEM-X (12 m) and SRTM (30 m) digital elevation models (DEMs) have been utilized. The mean elevation change in the catchments is found to be −9.56 ± 0.2 m (mean annual elevation change rate is −0.68 ± 0.01 m a−1). To highlight the water potential of this region, the total ice mass loss has been estimated to be 16.0 ± 1.2 Gigatonne (Gt) from 2000–2014 from eight identified catchments namely Yamunotri, Bhagirathi, Mandakini, Alaknanda, Dhauliganga, Pindar, Goriganga and Kali/Sarda. The estimated mass balance has been validated using reported observations on five selective glaciers and the coefficient of determination is 0.93. This spatial variation of ice thickness estimated in the eight catchments is critical, as the melt-water from these glaciers contribute to the upper Ganga basin.
Bioactive coating of zirconia toughened alumina ceramic implants improves cancellous osseointegration
Authors: Pobloth Anne-Marie , Mersiowsky Max J. , Kliemt Luisa , Schell Hanna , Dienelt Anke , Pfitzner Berit M. , Burgkart Rainer , Detsch Rainer , Wulsten Dag , Boccaccini Aldo R. , Duda Georg N. 
Published: November 2019

AbstractBioactive coatings have the potential to improve the bony integration of mechanically loaded orthopedic ceramic implants. Using the concept of mimicking the natural bone surface, four different coatings of varying thickness on a zirconia toughened alumina (ZTA) ceramic implant were investigated regarding their osseointegration in a drill-hole model in sheep. The hypothesis that a bioactive coating of ZTA ceramics would facilitate cancellous bone integration was investigated. The bioactive coatings consisted of either a layer of covalently bound multi phosphonate molecules (chemical modification = CM), a nano hydoxyapatite coating (HA), or two different bioactive glass (BG) coatings in micrometer thickness, forming a hydroxyl-carbonate apatite layer on the implant surface in vivo (dip-coated 45S5 = DipBG; sol-gel 70S30C = SGBG). Coated surfaces were characterized by scanning electron microscopy and X-ray photoelectron spectroscopy. After 12 weeks, osseointegration was evaluated via mechanical push-out testing and histology. HA enhanced the maximum push-out force (HA: mean 3573.85 ± 1119.91 N; SGBG: mean 1691.57 ± 986.76 N; p = 0.046), adhesive shear strength (HA: mean 9.82 ± 2.89 MPA; SGBG: mean 4.57 ± 2.65 MPA; p = 0.025), and energy release rate (HA: mean 3821.95 ± 1474.13 J/mm2; SGBG: mean 1558.47 ± 923.47 J/mm2; p = 0.032) compared to SGBG. The implant-bone interfacial stiffness increased by CM compared to SGBG coating (CM: mean 6258.06 ± 603.80 N/mm; SGBG: mean 3565.57 ± 1705.31 n/mm; p = 0.038). Reduced mechanical osseointegration of SGBG coated implants could be explained histologically by a foreign body reaction surrounding the implants.
Comprehensive genome and transcriptome analyses reveal genetic relationship, selection signature, and transcriptome landscape of small-sized Korean native Jeju horse
Authors: Srikanth Krishnamoorthy , Kim Nam-Young , Park WonCheoul , Kim Jae-Min , Kim Kwon-Do , Lee Kyung-Tai , Son Ju-Hwan , Chai Han-Ha , Choi Jung-Woo , Jang Gul-Won , Kim Heebal , Ryu Youn-Chul , Nam Jin-Wu , Park Jong-Eun , Kim Jun-Mo , Lim Dajeong 
Published: November 2019

AbstractThe Jeju horse, indigenous to the Jeju Island in Korea may have originated from Mongolian horses. Adaptations to the local harsh environment have conferred Jeju horse with unique traits such as small-sized body, stocky head, and shorter limbs. These characteristics have not been studied previously at the genomic level. Therefore, we sequenced and compared the genome of 41 horses belonging to 6 breeds. We identified numerous breed-specific non-synonymous SNPs and loss-of-function mutants. Demographic and admixture analyses showed that, though Jeju horse is genetically the closest to the Mongolian breeds, its genetic ancestry is independent of that of the Mongolian breeds. Genome wide selection signature analysis revealed that genes such asLCORL,MSTN,HMGA2,ZFAT,LASP1,PDK4, andACTN2, were positively selected in the Jeju horse. RNAseq analysis showed that several of these genes were also differentially expressed in Jeju horse compared to Thoroughbred horse. Comparative muscle fiber analysis showed that, the type I muscle fibre content was substantially higher in Jeju horse compared to Thoroughbred horse. Our results provide insights about the selection of complex phenotypic traits in the small-sized Jeju horse and the novel SNPs identified will aid in designing high-density SNP chip for studying other native horse breeds.
Cysteine immobilisation on the polyethylene terephthalate surfaces and its effect on the haemocompatibility
Authors: Ramachandran Balaji , Muthuvijayan Vignesh 
Published: November 2019

AbstractNitric oxide (NO) is an important signalling molecule involved in haemostasis. NO, present as endogenous S-nitrosothiols, is released by cysteine through a transnitrosation reaction. To exploit this mechanism, cysteine was immobilised onto the different carboxylated polyethylene terephthalate (PET) surfaces using 1-step EDC (1-ethyl-3-(3-dimethylaminopropyl) carbodiimide) crosslinking mechanism. Immobilised cysteine concentration and NO release were dependent on the surface carboxyl density. Stability studies showed that the immobilised cysteine concentration and NO release reduced within 6 h. Immobilisation of cysteine derivatives eliminated the possibility of formation of polycysteine and its electrostatic interaction with the carboxylated PET. The immobilised cysteine concentration did not recover after DTT treatment, eliminating the possibility of disulphide bond formation. Further, cysteine was immobilised using a 2-step EDC crosslinking mechanism. Although the cysteine concentration reduced during stability studies, it recovered upon DTT treatment, indicating that cysteine forms amide bonds with the carboxylated PET and the observed decrease in cysteine concentration is probably due to the formation of disulphide bonds. The haemocompatibility of the cysteine immobilised PET surfaces showed similar results compared to the carboxylated PET. The loss of thiol groups due to the disulphide bond restricts the transnitrosation reaction. Hence, these materials can be used primarily in short-term applications.
Ligand induced dissociation of the AR homodimer precedes AR monomer translocation to the nucleus
Authors: Shizu Ryota , Yokobori Kosuke , Perera Lalith , Pedersen Lee , Negishi Masahiko 
Published: November 2019

AbstractThe androgen receptor (AR) regulates male sexual development. We have now investigated AR homodimerization, hormone-dependent monomerization and nuclear translocation in PC-3 and COS-1 cells, by utilizing mutations associated with the androgen insensitivity syndrome: Pro767Ala, Phe765Leu, Met743Val and Trp742Arg. AR wild type (WT) was expressed as a homodimer in the cytoplasm, while none of these mutants formed homodimers. Unlike AR WT which responded to 1 nM dihydrotestosterone (DHT) to dissociate and translocate into the nucleus, AR Pro767Ala and Phe765Leu mutants remain as the monomer in the cytoplasm. In the crystal structure of the AR LBD homodimer, Pro767 and Phe765 reside closely on a loop that constitutes the dimer interface; their sidechains interact with the Pro767 of the other monomer and with the DHT molecule in the ligand-binding pocket. These observations place Phe765 at a position to facilitate DHT binding to Pro767 and lead to dissociation of the AR homodimer in the cytoplasm. This Pro-Phe Met relay may constitute a structural switch that mediates androgen signaling and is conserved in other steroid hormone receptors.
Temporal stability of fMRI in medetomidine-anesthetized rats
Authors: Sirmpilatze Nikoloz , Baudewig Jürgen , Boretius Susann 
Published: November 2019

AbstractMedetomidine has become a popular choice for anesthetizing rats during long-lasting sessions of blood-oxygen-level dependent (BOLD) functional magnetic resonance imaging (fMRI). Despite this, it has not yet been thoroughly established how commonly reported fMRI readouts evolve over several hours of medetomidine anesthesia and how they are affected by the precise timing, dose, and route of administration. We used four different protocols of medetomidine administration to anesthetize rats for up to six hours and repeatedly evaluated somatosensory stimulus-evoked BOLD responses and resting state functional connectivity. We found that the temporal evolution of fMRI readouts strongly depended on the method of administration. Intravenous administration of a medetomidine bolus (0.05 mg/kg), combined with a subsequent continuous infusion (0.1 mg/kg/h), led to temporally stable measures of stimulus-evoked activity and functional connectivity throughout the anesthesia. Deviating from the above protocol—by omitting the bolus, lowering the medetomidine dose, or using the subcutaneous route—compromised the stability of these measures in the initial two-hour period. We conclude that both an appropriate protocol of medetomidine administration and a suitable timing of fMRI experiments are crucial for obtaining consistent results. These factors should be considered for the design and interpretation of future rat fMRI studies.
Caste-specific nutritional differences define carbon and nitrogen fluxes within symbiotic food webs in African termite mounds
Authors: Vesala Risto , Arppe Laura , Rikkinen Jouko 
Published: November 2019

AbstractFungus-growing termites of the genusMacrotermescultivate symbiotic fungi (Termitomyces) in their underground nest chambers to degrade plant matter collected from the environment. Although the general mechanism of food processing is relatively well-known, it has remained unclear whether the termites get their nutrition primarily from the fungal mycelium or from plant tissues partly decomposed by the fungus. To elucidate the flows of carbon and nitrogen in the complicated food-chains within the nests of fungus-growing termites, we determined the stable isotope signatures of different materials sampled from fourMacrotermescolonies in southern Kenya. Stable isotopes of carbon revealed that the termite queen and the young larvae are largely sustained by the fungal mycelium. Conversely, all adult workers and soldiers seem to feed predominantly on plant and/or fungus comb material, demonstrating that the fungal symbiont plays a different nutritional role for different termite castes. Nitrogen stable isotopes indicated additional differences between castes and revealed intriguing patterns in colony nitrogen cycling. Nitrogen is effectively recycled within the colonies, but also a presently unspecified nitrogen source, most likely symbiotic nitrogen-fixing bacteria, seems to contribute to nitrogen supply. Our results indicate that the gut microbiota of the termite queen might be largely responsible for the proposed nitrogen fixation.
In vitro study of interaction of 17β-hydroxysteroid dehydrogenase type 10 and cyclophilin D and its potential implications for Alzheimer’s disease
Authors: Hemmerová Erika , Špringer Tomáš , Krištofiková Zdenka , Homola Jiří 
Published: November 2019

AbstractIn early stages of Alzheimer’s disease (AD), amyloid-β (Aβ) accumulates in neuronal mitochondria where it interacts with a number of biomolecules including 17beta-hydroxysteroide dehydrogenase 10 (17β-HSD10) and cyclophilin D (cypD). It has been hypothesized that 17β-HSD10 interacts with cypD preventing it from opening mitochondrial permeability transition pores and that its regulation during AD may be affected by the accumulation of Aβ. In this work, we demonstrate for the first time that 17β-HSD10 and cypD form a stable complex in vitro. Furthermore, we show that factors, such as pH, ionic environment and the presence of Aβ, affect the ability of 17β-HSD10 to bind cypD. We demonstrate that K+ and Mg2+ ions present at low levels may facilitate this binding. We also show that different fragments of Aβ (Aβ1–40 and Aβ1–42) affect the interaction between 17β-HSD10 and cypD differently and that Aβ1–42 (in contrast to Aβ1–40) is capable of simultaneously binding both 17β-HSD10 and cypD in a tri-complex.
A Bootstrap Method for Goodness of Fit and Model Selection with a Single Observed Network
Authors: Chen Sixing , Onnela Jukka-Pekka 
Published: November 2019

AbstractNetwork models are applied in numerous domains where data arise from systems of interactions among pairs of actors. Both statistical and mechanistic network models are increasingly capable of capturing various dependencies among these actors. Yet, these dependencies pose statistical challenges for analyzing such data, especially when the data set comprises only a single observation of one network, often leading to intractable likelihoods regardless of the modeling paradigm and limiting the application of existing statistical methods for networks. We explore a subsampling bootstrap procedure to serve as the basis for goodness of fit and model selection with a single observed network that circumvents the intractability of such likelihoods. Our approach is based on flexible resampling distributions formed from the single observed network, allowing for more nuanced and higher dimensional comparisons than point estimates of quantities of interest. We include worked examples for model selection, with simulation, and assessment of goodness of fit, with duplication-divergence model fits for yeast (S.cerevisiae) protein-protein interaction data from the literature. The proposed approach produces a flexible resampling distribution that can be based on any network statistics of one’s choosing and can be employed for both statistical and mechanistic network models.
Potential modulations in flatland: near-infrared sensitization of MoS2 phototransistors by a solvatochromic dye directly tethered to sulfur vacancies
Authors: Dalgleish Simon , Reissig Louisa , Shuku Yoshiaki , Ligorio Giovanni , Awaga Kunio , List-Kratochvil Emil J. W. 
Published: November 2019

AbstractNear-infrared sensitization of monolayer MoS2 is here achieved via the covalent attachment of a novel heteroleptic nickel bis-dithiolene complex into sulfur vacancies in the MoS2 structure. Photocurrent action spectroscopy of the sensitized films reveals a discreet contribution from the sensitizer dye centred around 1300 nm (0.95 eV), well below the bandgap of MoS2 (2.1 eV), corresponding to the excitation of the monoanionic dithiolene complex. A mechanism of conductivity enhancement is proposed based on a photo-induced flattening of the corrugated energy landscape present at sulfur vacancy defect sites within the MoS2 due to a dipole change within the dye molecule upon photoexcitation. This method of sensitization might be readily extended to other functional molecules that can impart a change to the dielectric environment at the MoS2 surface under stimulation, thereby extending the breadth of detector applications for MoS2 and other transition metal dichalcogenides.
Deciphering predictive factors for choice of thrombopoietin receptor agonist, treatment free responses, and thrombotic events in immune thrombocytopenia
Authors: Lozano Maria L. , Mingot-Castellano Maria E. , Perera María M. , Jarque Isidro , Campos-Alvarez Rosa M. , González-López Tomás J. , Carreño-Tarragona Gonzalo , Bermejo Nuria , Lopez-Fernandez Maria F. , de Andrés Aurora , Valcarcel David , Casado-Montero Luis F. , Alvarez-Roman Maria T. , Orts María I. , Novelli Silvana , Revilla Nuria , González-Porras Jose R. , Bolaños Estefanía , Rodríguez-López Manuel A. , Orna-Montero Elisa , Vicente Vicente 
Published: November 2019

AbstractVery few data exist on when a particular thrombopoietin-receptor agonist (TPO-RA) is favored in clinical practice for the treatment of patients with immune thrombocytopenia (ITP), about novel risk factors for vascular events (VE) with these drugs, nor about predictive factors for therapy free responses (TFR). We conducted an observational, retrospective, long-term follow-up multicenter study from November 2016 to January 2018 of 121 adult ITP patients initiating TPO-RA between January 2012 to December 2014. Data reflected that a platelet count ≤25 × 109/l at the time when the TPO-RA was initiated was associated with a 2.8 higher probability of receiving romiplostim vs. eltrombopag (P = 0.010). VE on TPO-RA was related to previous neoplasia in patients over 65 years (50% vs. 2.2%, P < 0.001), and to previous splenectomy in younger patients (100% vs. 33%, P = 0.001). Receiving romiplostim as first TPO-RA with no subsequent TPO-RA switching was associated with a 50% likelihood of TFR after 2.9 years of therapy (3.3 years in chronic ITP patients). These real-world data help deciphering some areas of uncertainty, and offer insight into some of the most relevant challenges of ITP which may help clinicians make appropriate treatment decisions in the management of adult ITP patients with TPO-RA.