bluuebunny/crossref_metadata_2025_split huggingface dataset:
Glial type specific regulation of CNS angiogenesis by HIFα-activated different signaling pathways
Authors: Zhang Sheng , Kim Bokyung , Zhu Xiaoqing , Gui Xuehong , Wang Yan , Lan Zhaohui , Prabhu Preeti , Fond Kenneth , Wang Aijun , Guo Fuzheng 
Published: April 2020

AbstractThe mechanisms by which oligodendroglia modulate CNS angiogenesis remain elusive. Previous in vitro data suggest that oligodendroglia regulate CNS endothelial cell proliferation and blood vessel formation through hypoxia inducible factor alpha (HIFα)-activated Wnt (but not VEGF) signaling. Using in vivo genetic models, we show that HIFα in oligodendroglia is necessary and sufficient for angiogenesis independent of CNS regions. At the molecular level, HIFα stabilization in oligodendroglia does not perturb Wnt signaling but rather activates VEGF. At the functional level, genetically blocking oligodendroglia-derived VEGF but not Wnt significantly decreases oligodendroglial HIFα-regulated CNS angiogenesis. Blocking astroglia-derived Wnt signaling reduces astroglial HIFα-regulated CNS angiogenesis. Together, our in vivo data demonstrate that oligodendroglial HIFα regulates CNS angiogenesis through Wnt-independent and VEGF-dependent signaling. These findings suggest an alternative mechanistic understanding of CNS angiogenesis by postnatal glial cells and unveil a glial cell type-dependent HIFα-Wnt axis in regulating CNS vessel formation.
Single-shot link discovery for terahertz wireless networks
Authors: Ghasempour Yasaman , Shrestha Rabi , Charous Aaron , Knightly Edward , Mittleman Daniel M. 
Published: April 2020

AbstractOf the many challenges in building a wireless network at terahertz frequencies, link discovery remains one of the most critical and least explored. In a network of mobile receivers using narrow directional beams, how do the nodes rapidly locate each other? This direction information is crucial for beam forming and steering, which are fundamental operations for maintaining link quality. As the carrier frequency increases into the terahertz range, the conventional methods used by existing networks become prohibitively time-consuming, so an alternative strategy is required. Using a leaky-wave antenna with a broadband transmitter, we demonstrate a single-shot approach for link discovery which can be accomplished much more rapidly. Our method relies on measurements of the width of a broad spectrum, and does not require any information about the phase of the received signal. This protocol, which relies on a detailed understanding of the radiation from leaky-wave devices, offers a realistic approach for enabling mobility in directional networks.
The UPR sensor IRE1α and the adenovirus E3-19K glycoprotein sustain persistent and lytic infections
Authors: Prasad Vibhu , Suomalainen Maarit , Jasiqi Yllza , Hemmi Silvio , Hearing Patrick , Hosie Louise , Burgert Hans-Gerhard , Greber Urs F. 
Published: April 2020

AbstractPersistent viruses cause chronic disease, and threaten the lives of immunosuppressed individuals. Here, we elucidate a mechanism supporting the persistence of human adenovirus (AdV), a virus that can kill immunosuppressed patients. Cell biological analyses, genetics and chemical interference demonstrate that one of five AdV membrane proteins, the E3-19K glycoprotein specifically triggers the unfolded protein response (UPR) sensor IRE1α in the endoplasmic reticulum (ER), but not other UPR sensors, such as protein kinase R-like ER kinase (PERK) and activating transcription factor 6 (ATF6). The E3-19K lumenal domain activates the IRE1α nuclease, which initiates mRNA splicing of X-box binding protein-1 (XBP1). XBP1s binds to the viral E1A-enhancer/promoter sequence, and boosts E1A transcription, E3-19K levels and lytic infection. Inhibition of IRE1α nuclease interrupts the five components feedforward loop, E1A, E3-19K, IRE1α, XBP1s, E1A enhancer/promoter. This loop sustains persistent infection in the presence of the immune activator interferon, and lytic infection in the absence of interferon.
Solid solution for catalytic ammonia synthesis from nitrogen and hydrogen gases at 50 °C
Authors: Hattori Masashi , Iijima Shinya , Nakao Takuya , Hosono Hideo , Hara Michikazu 
Published: April 2020

AbstractThe lack of efficient catalysts for ammonia synthesis from N2 and H2 gases at the lower temperature of ca. 50 °C has been a problem not only for the Haber–Bosch process, but also for ammonia production toward zero CO2 emissions. Here, we report a new approach for low temperature ammonia synthesis that uses a stable electron-donating heterogeneous catalyst, cubic CaFH, a solid solution of CaF2 and CaH2 formed at low temperatures. The catalyst produced ammonia from N2 and H2 gases at 50 °C with an extremely small activation energy of 20 kJ mol−1, which is less than half that for conventional catalysts reported. The catalytic performance can be attributed to the weak ionic bonds between Ca2+ and H− ions in the solid solution and the facile release of hydrogen atoms from H− sites.
Molecular basis for assembly of the shieldin complex and its implications for NHEJ
Authors: Liang Ling , Feng Jiawen , Zuo Peng , Yang Juan , Lu Yishuo , Yin Yuxin 
Published: April 2020

AbstractShieldin, including SHLD1, SHLD2, SHLD3 and REV7, functions as a bridge linking 53BP1-RIF1 and single-strand DNA to suppress the DNA termini nucleolytic resection during non-homologous end joining (NHEJ). However, the mechanism of shieldin assembly remains unclear. Here we present the crystal structure of the SHLD3-REV7-SHLD2 ternary complex and reveal an unexpected C (closed)-REV7-O (open)-REV7 conformational dimer mediated by SHLD3. We show that SHLD2 interacts with O-REV7 and the N-terminus of SHLD3 by forming β sheet sandwich. Disruption of the REV7 conformational dimer abolishes the assembly of shieldin and impairs NHEJ efficiency. The conserved FXPWFP motif of SHLD3 binds to C-REV7 and blocks its binding to REV1, which excludes shieldin from the REV1/Pol ζ translesion synthesis (TLS) complex. Our study reveals the molecular architecture of shieldin assembly, elucidates the structural basis of the REV7 conformational dimer, and provides mechanistic insight into orchestration between TLS and NHEJ.
Methylglyoxal couples metabolic and translational control of Notch signalling in mammalian neural stem cells
Authors: Rodrigues Deivid Carvalho , Harvey Emily M. , Suraj Rejitha , Erickson Sarah L. , Mohammad Lamees , Ren Mengli , Liu Hongrui , He Guiqiong , Kaplan David R. , Ellis James , Yang Guang 
Published: April 2020

AbstractGene regulation and metabolism are two fundamental processes that coordinate the self-renewal and differentiation of neural precursor cells (NPCs) in the developing mammalian brain. However, little is known about how metabolic signals instruct gene expression to control NPC homeostasis. Here, we show that methylglyoxal, a glycolytic intermediate metabolite, modulates Notch signalling to regulate NPC fate decision. We find that increased methylglyoxal suppresses the translation of Notch1 receptor mRNA in mouse and human NPCs, which is mediated by binding of the glycolytic enzyme GAPDH to an AU-rich region within Notch1 3ʹUTR. Interestingly, methylglyoxal inhibits the enzymatic activity of GAPDH and engages it as an RNA-binding protein to suppress Notch1 translation. Reducing GAPDH levels or restoring Notch signalling rescues methylglyoxal-induced NPC depletion and premature differentiation in the developing mouse cortex. Taken together, our data indicates that methylglyoxal couples the metabolic and translational control of Notch signalling to control NPC homeostasis.
Loss of MBNL1 induces RNA misprocessing in the thymus and peripheral blood
Authors: Sznajder Łukasz J. , Scotti Marina M. , Shin Jihae , Taylor Katarzyna , Ivankovic Franjo , Nutter Curtis A. , Aslam Faaiq N. , Subramony S. H. , Ranum Laura P. W. , Swanson Maurice S. 
Published: April 2020

AbstractThe thymus is a primary lymphoid organ that plays an essential role in T lymphocyte maturation and selection during development of one arm of the mammalian adaptive immune response. Although transcriptional mechanisms have been well documented in thymocyte development, co-/post-transcriptional modifications are also important but have received less attention. Here we demonstrate that the RNA alternative splicing factor MBNL1, which is sequestered in nuclear RNA foci by C(C)UG microsatellite expansions in myotonic dystrophy (DM), is essential for normal thymus development and function.Mbnl1129S1 knockout mice develop postnatal thymic hyperplasia with thymocyte accumulation. Transcriptome analysis indicates numerous gene expression and RNA mis-splicing events, including transcription factors from the TCF/LEF family.CNBP, the gene containing an intronic CCTG microsatellite expansion in DM type 2 (DM2), is coordinately expressed withMBNL1in the developing thymus and DM2 CCTG expansions induce similar transcriptome alterations in DM2 blood, which thus serve as disease-specific biomarkers.
Associations of drinking rainwater with macro-mineral intake and cardiometabolic health: a pooled cohort analysis in Bangladesh, 2016–2019
Authors: Naser Abu Mohd , Rahman Mahbubur , Unicomb Leanne , Parvez Sarker Masud , Islam Shariful , Doza Solaiman , Khan Golam Kibria , Ahmed Kazi Matin , Anand Shuchi , Luby Stephen P. , Shamsudduha Mohammad , Gribble Matthew O. , Narayan K. M. Venkat , Clasen Thomas F. 
Published: April 2020

AbstractThis study explores the associations of drinking rainwater with mineral intake and cardiometabolic health in the Bangladeshi population. We pooled 10030 person-visit data on drinking water sources, blood pressure (BP) and 24-h urine minerals. Fasting blood glucose (FBG) was measured in 3724 person-visits, and lipids in 1118 person-visits. We measured concentrations of sodium (Na), potassium (K), calcium (Ca) and magnesium (Mg) in 253 rainwater, 935 groundwater and 130 pond water samples. We used multilevel linear or gamma regression models with participant-, household- and community-level random intercepts to estimate the associations of rainwater consumption with urine minerals and cardiometabolic biomarkers. Rainwater samples had the lowest concentrations of Na, K, Ca and Mg. Rainwater drinkers had lower urine minerals than coastal groundwater drinkers: −13.42 (95% CI: −18.27, −8.57) mmol Na/24 h, −2.00 (95% CI: −3.16, −0.85) mmol K/24 h and −0.57 (95% CI: −1.02, −0.16) mmol Mg/24 h. The ratio of median 24-hour urinary Ca for rainwater versus coastal groundwater drinkers was 0.72 (95% CI: 0.64, 0.80). Rainwater drinkers had 2.15 (95% CI: 1.02, 3.27) mm Hg higher systolic BP, 1.82 (95% CI: 1.19, 2.54) mm Hg higher diastolic BP, 0.59 (95% CI: 0.17, 1.01) mmol/L higher FBG and −2.02 (95% CI: −5.85, 0.81) mg/dl change in high-density lipoprotein cholesterol compared with the coastal groundwater drinkers. Drinking rainwater was associated with worse cardiometabolic health measures, which may be due to the lower intake of salubrious Ca, Mg and K.
In situ observation of helium and argon release during fluid-pressure-triggered rock deformation
Authors: Roques Clément , Weber Ulrich W. , Brixel Bernard , Krietsch Hannes , Dutler Nathan , Brennwald Matthias S. , Villiger Linus , Doetsch Joseph , Jalali Mohammadreza , Gischig Valentin , Amann Florian , Valley Benoît , Klepikova Maria , Kipfer Rolf 
Published: April 2020

AbstractTemporal changes in groundwater chemistry can reveal information about the evolution of flow path connectivity during crustal deformation. Here, we report transient helium and argon concentration anomalies monitored during a series of hydraulic reservoir stimulation experiments measured with an in situ gas equilibrium membrane inlet mass spectrometer. Geodetic and seismic analyses revealed that the applied stimulation treatments led to the formation of new fractures (hydraulic fracturing) and the reactivation of natural fractures (hydraulic shearing), both of which remobilized (He, Ar)-enriched fluids trapped in the rock mass. Our results demonstrate that integrating geochemical information with geodetic and seismic data provides critical insights to understanding dynamic changes in fracture network connectivity during reservoir stimulation. The results of this study also shed light on the linkages between fluid migration, rock deformation and seismicity at the decameter scale.
Intra-striatal AAV2.retro administration leads to extensive retrograde transport in the rhesus macaque brain: implications for disease modeling and therapeutic development
Authors: Weiss Alison R. , Liguore William A. , Domire Jacqueline S. , Button Dana , McBride Jodi L. 
Published: April 2020

AbstractRecently, AAV2.retro, a new capsid variant capable of efficient retrograde transport in brain, was generated in mice using a directed evolution approach. However, it remains unclear to what degree transport will be recapitulated in the substantially larger and more complex nonhuman primate (NHP) brain. Here, we compared the biodistribution of AAV2.retro with its parent serotype, AAV2, in adult macaques following delivery into the caudate and putamen, brain regions which comprise the striatum. While AAV2 transduction was primarily limited to the injected brain regions, AAV2.retro transduced cells in the striatum and in dozens of cortical and subcortical regions with known striatal afferents. We then evaluated the capability of AAV2.retro to deliver disease-related gene cargo to biologically-relevant NHP brain circuits by packaging a fragment of human mutant HTT, the causative gene mutation in Huntington’s disease. Following intra-striatal delivery, pathological mHTT-positive protein aggregates were distributed widely among cognitive, motor, and limbic cortico-basal ganglia circuits. Together, these studies demonstrate strong retrograde transport of AAV2.retro in NHP brain, highlight its utility in developing novel NHP models of brain disease and suggest its potential for querying circuit function and delivering therapeutic genes in the brain, particularly where treating dysfunctional circuits, versus single brain regions, is warranted.
The interplay of top-down focal attention and the cortical tracking of speech
Authors: Lesenfants D. , Francart T. 
Published: April 2020

AbstractMany active neuroimaging paradigms rely on the assumption that the participant sustains attention to a task. However, in practice, there will be momentary distractions, potentially influencing the results. We investigated the effect of focal attention, objectively quantified using a measure of brain signal entropy, on cortical tracking of the speech envelope. The latter is a measure of neural processing of naturalistic speech. We let participants listen to 44 minutes of natural speech, while their electroencephalogram was recorded, and quantified both entropy and cortical envelope tracking. Focal attention affected the later brain responses to speech, between 100 and 300 ms latency. By only taking into account periods with higher attention, the measured cortical speech tracking improved by 47%. This illustrates the impact of the participant’s active engagement in the modeling of the brain-speech response and the importance of accounting for it. Our results suggest a cortico-cortical loop that initiates during the early-stages of the auditory processing, then propagates through the parieto-occipital and frontal areas, and finally impacts the later-latency auditory processes in a top-down fashion. The proposed framework could be transposed to other active electrophysiological paradigms (visual, somatosensory, etc) and help to control the impact of participants’ engagement on the results.
Velocity storage mechanism drives a cerebellar clock for predictive eye velocity control
Authors: Miki Shuntaro , Urase Kohei , Baker Robert , Hirata Yutaka 
Published: April 2020

AbstractPredictive motor control is ubiquitously employed in animal kingdom to achieve rapid and precise motor action. In most vertebrates large, moving visual scenes induce an optokinetic response (OKR) control of eye movements to stabilize vision. In goldfish, the OKR was found to be predictive after a prolonged exposure to temporally periodic visual motion. A recent study showed the cerebellum necessary to acquire this predictive OKR (pOKR), but it remained unclear as to whether the cerebellum alone was sufficient. Herein we examined different fish species known to share the basic architecture of cerebellar neuronal circuitry for their ability to acquire pOKR. Carps were shown to acquire pOKR like goldfish while zebrafish and medaka did not, demonstrating the cerebellum alone not to be sufficient. Interestingly, those fish that acquired pOKR were found to exhibit long-lasting optokinetic after nystagmus (OKAN) as opposed to those that didn’t. To directly manipulate OKAN vestibular-neurectomy was performed in goldfish that severely shortened OKAN, but pOKR was acquired comparable to normal animals. These results suggest that the neuronal circuitry producing OKAN, known as the velocity storage mechanism (VSM), is required to acquire pOKR irrespective of OKAN duration. Taken together, we conclude that pOKR is acquired through recurrent cerebellum-brainstem parallel loops in which the cerebellum adjusts VSM signal flow and, in turn, receives appropriately timed eye velocity information to clock visual world motion.
Interleukin-1α associates with the tumor suppressor p53 following DNA damage
Authors: Novak J. , Zamostna B. , Vopalensky V. , Buryskova M. , Burysek L. , Doleckova D. , Pospisek M. 
Published: April 2020

AbstractInterleukin-1α (IL-1α) is a dual-function proinflammatory mediator. In addition to its role in the canonical IL-1 signaling pathway, which employs membrane-bound receptors, a growing body of evidence shows that IL-1α has some additional intracellular functions. We identified the interaction of IL-1α with the tumor suppressor p53 in the nuclei and cytoplasm of both malignant and noncancerous mammalian cell lines using immunoprecipitation and the in situ proximity ligation assay (PLA). This interaction was enhanced by treatment with the antineoplastic drug etoposide, which suggests a role for the IL-1α•p53 interaction in genotoxic stress.
How Monitor Characteristics Affect Human Perception in Visual Computer Experiments: CRT vs. LCD Monitors in Millisecond Precise Timing Research
Authors: Rohr Michaela , Wagner Alexander 
Published: April 2020

AbstractLiquid crystal display (LCD) monitors are nowadays standard in computerized visual presentation. However, when millisecond precise presentation is concerned, they have often yielded imprecise and unreliable presentation times, with substantial variation across specific models, making it difficult to know whether they can be used for precise vision experiments or not. The present paper intends to act as hands-on guide to set up an experiment requiring millisecond precise visual presentation with LCD monitors. It summarizes important characteristics relating to precise visual stimulus presentation, enabling researchers to transfer parameters reported for cathode ray tube (CRT) monitors to LCD monitors. More importantly, we provide empirical evidence from a preregistered study showing the suitability of LCD monitors for millisecond precise timing research. Using sequential testing, we conducted a masked number priming experiment using CRT and LCD monitors. Both monitor types yielded comparable results as indicated by Bayes factor favoring the null hypothesis of no difference between display types. More specifically, we found masked number priming under conditions of zero awareness with both types of monitor. Thus, the present study highlights the importance of hardware settings for empirical psychological research; inadequate settings might lead to more “noise” in results thereby concealing potentially existing effects.
Social Structure Predicts Eye Contact Tolerance in Nonhuman Primates: Evidence from a Crowd-Sourcing Approach
Authors: Harrod Ethan G. , Coe Christopher L. , Niedenthal Paula M. 
Published: April 2020

AbstractIn most primates, eye contact is an implicit signal of threat, and often connotes social status and imminent physical aggression. However, in humans and some of the gregarious nonhuman primates, eye contact is tolerated more and may be used to communicate other emotional and mental states. What accounts for the variation in this critical social cue across primate species? We crowd-sourced primatologists and found a strong linear relationship between eye contact tolerance and primate social structure such that eye contact tolerance increased as social structures become more egalitarian. In addition to constituting the first generalizable demonstration of this relationship, our findings serve to inform the related question of why eye contact is deferentially avoided in some human cultures, while eye contact is both frequent and even encouraged in others.
Automated measurement of hydrops ratio from MRI in patients with Ménière’s disease using CNN-based segmentation
Authors: Cho Young Sang , Cho Kyeongwon , Park Chae Jung , Chung Myung Jin , Kim Jong Hyuk , Kim Kyunga , Kim Yi-Kyung , Kim Hyung-Jin , Ko Jae-Wook , Cho Baek Hwan , Chung Won-Ho 
Published: April 2020

AbstractMénière’s Disease (MD) is difficult to diagnose and evaluate objectively over the course of treatment. Recently, several studies have reported MD diagnoses by MRI-based endolymphatic hydrops (EH) analysis. However, this method is time-consuming and complicated. Therefore, a fast, objective, and accurate evaluation tool is necessary. The purpose of this study was to develop an algorithm that can accurately analyze EH on intravenous (IV) gadolinium (Gd)-enhanced inner-ear MRI using artificial intelligence (AI) with deep learning. In this study, we developed a convolutional neural network (CNN)-based deep-learning model named INHEARIT (INner ear Hydrops Estimation via ARtificial InTelligence) for the automatic segmentation of the cochlea and vestibule, and calculation of the EH ratio in the segmented region. Measurement of the EH ratio was performed manually by a neuro-otologist and neuro-radiologist and by estimation with the INHEARIT model and were highly consistent (intraclass correlation coefficient = 0.971). This is the first study to demonstrate that automated EH ratio measurements are possible, which is important in the current clinical context where the usefulness of IV-Gd inner-ear MRI for MD diagnosis is increasing.