bluuebunny/crossref_metadata_2025_split huggingface dataset:
Chemotherapy-induced neuroinflammation is associated with disrupted colonic and bacterial homeostasis in female mice
Authors: Loman B. R. , Jordan K. R. , Haynes B. , Bailey M. T. , Pyter L. M. 
Published: November 2019

AbstractChemotherapy treatment negatively affects the nervous and immune systems and alters gastrointestinal function and microbial composition. Outside of the cancer field, alterations in commensal bacteria and immune function have been implicated in behavioral deficits; however, the extent to which intestinal changes are related to chemotherapy-associated behavioral comorbidities is not yet known. Thus, this study identified concurrent changes in behavior, central and peripheral immune activation, colon histology, and bacterial community structure in mice treated with paclitaxel chemotherapy. In paclitaxel-treated mice, increased fatigue and decreased cognitive performance occurred in parallel with reduced microglia immunoreactivity, increased circulating chemokine expression (CXCL1), as well as transient increases in pro-inflammatory cytokine/chemokine (Il-1β, Tnfα, Il-6, and Cxcl1) gene expression in the brain. Furthermore, mice treated with paclitaxel had altered colonic bacterial community composition and increased crypt depth. Relative abundances of multiple bacterial taxa were associated with paclitaxel-induced increases in colon mass, spleen mass, and microglia activation. Although microbial community composition was not directly related to available brain or behavioral measures, structural differences in colonic tissue were strongly related to microglia activation in the dentate gyrus and the prefrontal cortex. These data indicate that the chemotherapeutic paclitaxel concurrently affects the gut microbiome, colonic tissue integrity, microglia activation, and fatigue in female mice, thus identifying a novel relationship between colonic tissue integrity and behavioral responses that is not often assessed in studies of the brain-gut-microbiota axis.
Early symptoms and sensations as predictors of lung cancer: a machine learning multivariate model
Authors: Levitsky Adrian , Pernemalm Maria , Bernhardson Britt-Marie , Forshed Jenny , Kölbeck Karl , Olin Maria , Henriksson Roger , Lehtiö Janne , Tishelman Carol , Eriksson Lars E. 
Published: November 2019

AbstractThe aim of this study was to identify a combination of early predictive symptoms/sensations attributable to primary lung cancer (LC). An interactive e-questionnaire comprised of pre-diagnostic descriptors of first symptoms/sensations was administered to patients referred for suspected LC. Respondents were included in the present analysis only if they later received a primary LC diagnosis or had no cancer; and inclusion of each descriptor required ≥4 observations. Fully-completed data from 506/670 individuals later diagnosed with primary LC (n = 311) or no cancer (n = 195) were modelled with orthogonal projections to latent structures (OPLS). After analysing 145/285 descriptors, meeting inclusion criteria, through randomised seven-fold cross-validation (six-fold training set: n = 433; test set: n = 73), 63 provided best LC prediction. The most-significant LC-positive descriptors included a cough that varied over the day, back pain/aches/discomfort, early satiety, appetite loss, and having less strength. Upon combining the descriptors with the background variables current smoking, a cold/flu or pneumonia within the past two years, female sex, older age, a history of COPD (positive LC-association); antibiotics within the past two years, and a history of pneumonia (negative LC-association); the resulting 70-variable model had accurate cross-validated test set performance: area under the ROC curve = 0.767 (descriptors only: 0.736/background predictors only: 0.652), sensitivity = 84.8% (73.9/76.1%, respectively), specificity = 55.6% (66.7/51.9%, respectively). In conclusion, accurate prediction of LC was found through 63 early symptoms/sensations and seven background factors. Further research and precision in this model may lead to a tool for referral and LC diagnostic decision-making.
Sirtuin 3 deficiency does not impede digit regeneration in mice
Authors: Busse Emily , Simkin Jennifer , Marrero Luis , Stewart Kennon , Brunauer Regina , Muneoka Ken , Guntur Anyonya , Lacey Michelle , Sammarco Mimi 
Published: November 2019

AbstractThe mitochondrial deacetylase sirtuin 3 (SIRT3) is thought to be one of the main contributors to metabolic flexibility–promoting mitochondrial energy production and maintaining homeostasis. In bone, metabolic profiles are tightly regulated and the loss of SIRT3 has deleterious effects on bone volume in vivo and on osteoblast differentiation in vitro. Despite the prominent role of this protein in bone stem cell proliferation, metabolic activity, and differentiation, the importance of SIRT3 for regeneration after bone injury has never been reported. We show here, using the mouse digit amputation model, that SIRT3 deficiency has no impact on the regenerative capacity and architecture of bone and soft tissue. Regeneration occurs in SIRT3 deficient mice in spite of the reduced oxidative metabolic profile of the periosteal cells. These data suggest that bone regeneration, in contrast to homeostatic bone turnover, is not reliant upon active SIRT3, and our results highlight the need to examine known roles of SIRT3 in the context of injury.
Light on the cell cycle of the non-photosynthetic bacterium Ramlibacter tataouinensis
Authors: De Luca Gilles , Fochesato Sylvain , Lavergne Jérôme , Forest Katrina T. , Barakat Mohamed , Ortet Philippe , Achouak Wafa , Heulin Thierry , Verméglio André 
Published: November 2019

AbstractRamlibacter tataouinensis TTB310, a non-photosynthetic betaproteobacterium isolated from a semi-arid region of southern Tunisia, forms both rods and cysts. Cysts are resistant to desiccation and divide when water and nutrients are available. Rods are motile and capable of dissemination. Due to the strong correlation between sunlight and desiccation, light is probably an important external signal for anticipating desiccating conditions. Six genes encoding potential light sensors were identified in strain TTB310. Two genes encode for bacteriophytochromes, while the four remaining genes encode for putative blue light receptors. We determined the spectral and photochemical properties of the two recombinant bacteriophytochromes RtBphP1 and RtBphP2. In both cases, they act as sensitive red light detectors. Cyst divisions and a complete cyst-rod-cyst cycle are the main processes in darkness, whereas rod divisions predominate in red or far-red light. Mutant phenotypes caused by the inactivation of genes encoding bacteriophytochromes or heme oxygenase clearly show that both bacteriophytochromes are involved in regulating the rod-rod division. This process could favor rapid rod divisions at sunrise, after dew formation but before the progressive onset of desiccation. Our study provides the first evidence of a light-based strategy evolved in a non-photosynthetic bacterium to exploit scarse water in a desert environment.
KMT2C, a histone methyltransferase, is mutated in a family segregating non-syndromic primary failure of tooth eruption
Authors: Assiry Ali A. , Albalawi Alia M. , Zafar Muhammad S. , Khan Siraj D. , Ullah Anhar , Almatrafi Ahmed , Ramzan Khushnooda , Basit Sulman 
Published: November 2019

AbstractPrimary failure of tooth eruption (PFE) is a rare odontogenic defect and is characterized by failure of eruption of one or more permanent teeth. The aim of the study is to identify the genetic defect in a family with seven affected individuals segregating autosomal dominant non-syndromic PFE. Whole genome single-nucleotide polymorphism (SNP) genotyping was performed. SNP genotypes were analysed by DominantMapper and multiple shared haplotypes were detected on different chromosomes. Four individuals, including three affected, were exome sequenced. Variants were annotated and data were analysed while considering candidate chromosomal regions. Initial analysis of variants obtained by whole exome sequencing identified damaging variants in C15orf40, EPB41L4A, TMEM232, KMT2C, and FBXW10 genes. Sanger sequencing of all family members confirmed segregation of splice acceptor site variant (c.1013-2 A > G) in the KMT2C gene with the phenotype. KMT2C is considered as a potential candidate gene based on segregation analysis, the absence of variant in the variation databases, the presence of variant in the shared identical by descent (IBD) region and in silico pathogenicity prediction. KMT2C is a histone methyltransferase and recently the role of another member of this family (KMT2D) has been implicated in tooth development. Moreover, protein structures of KMT2C and KMT2D are highly similar. In conclusion, we have identified that the KMT2C gene mutation causes familial non-syndromic PFE. These findings suggest the involvement of KMT2C in the physiological eruption of permanent teeth.
Rituximab protects against development of atherosclerotic cardiovascular disease after kidney transplantation: a propensity-matched study
Authors: Kim Deok Gie , Lee Juhan , Seo Won Jun , Lee Jae Geun , Kim Beom Seok , Kim Myoung Soo , Kim Soon Il , Kim Yu Seun , Huh Kyu Ha 
Published: November 2019

AbstractRecent studies have implicated B cells in atherosclerosis and have verified the atheroprotective effect of rituximab. Rituximab is widely used for desensitization in ABO-incompatible or crossmatch-positive kidney transplantation (KT). Using a single-center KT database, we performed propensity-matched analysis to investigate the association between rituximab and posttransplant atherosclerotic cardiovascular disease (ASCVD). Among 1299 eligible patients, 239 given rituximab induction were matched with 401 controls in a 1:2 propensity score matching process. The cumulative rate of ASCVD during 8 years of follow-up was significantly lower in rituximab-treated patients, compared with matched controls (3.7% vs. 11.2%; P = 0.012). However, all-cause mortality did not differ by group (2.9% vs. 4%; P = 0.943). In multivariable Cox analysis, rituximab proved independently protective of ASCVD (hazard ratio = 0.34, 95% confidence interval: 0.14–0.83). The lower risk of ASCVD seen with rituximab induction reached significance only in patient subsets of diabetes mellitus, pretransplant dialysis, or older age (>50 years). Rituximab induction confers a lower risk of ASCVD during the posttransplant period. This atheroprotective effect appears particularly beneficial in patients whose risk of ASCVD is heightened.
Changes in soil organic carbon and its influencing factors in the growth of Pinus sylvestris var. mongolica plantation in Horqin Sandy Land, Northeast China
Authors: Lei Zeyong , Yu Dongwei , Zhou Fengyan , Zhang Yansong , Yu Deliang , Zhou Yanping , Han Yangang 
Published: November 2019

AbstractThe change of soil organic carbon and its influencing factors after afforestation in sandy land should be taken into account. Here, the factors would be revealed which would influence the SOC dynamics to a depth of 100 cm during the development of Mongolian pine plantations in Horqin sandy land, northeast China. The chronosequence method was used to quantify the change of SOC in vertical distribution and influencing factors following conversion grassland to Pinus sylvestris var. mongolica forest in semi-arid sandy land, northeast China. Then the traditional statistical approaches were used to assessed the influence of the identified factors. Stand age played a major role in SOC dynamics. It took 38 years for SOC in 0–10 cm layer to recover to its initial level after afforestation, and 46 years for 10–20 cm layer. SOC accumulation increased with the age of Mongolian pine plantation. Over-mature forest fully embodied the advantage of SOC accumulation. In addition, the changes of SOC in 0–10 cm layer were also affected by TN, TP, TK and soil moisture, and those below 10 cm soil layers were related to the effects of TN, TP, TK, BD and CS.
Permutation entropy in intraoperative ECoG of brain tumour patients in awake tumour surgery– a robust parameter to separate consciousness from unconsciousness
Authors: Lange Nicole , Schleifer Sophia , Berndt Maria , Jörger Ann-Kathrin , Wagner Arthur , Krieg Sandro M. , Jordan Denis , Bretschneider Martin , Ryang Yu-Mi , Meyer Bernhard , Gempt Jens 
Published: November 2019

AbstractAwake craniotomies represent an essential opportunity in the case of lesions in eloquent areas. Thus, optimal surveillance of the patient during different stages of sedation, as well as the detection of seizure activity during brain surgery, remains difficult, as skin electrodes for electroencephalographic (EEG) analysis are not applicable in most cases. We assessed the applicability of ECoG to monitor different stages of sedation, as well as the influence of different patient characteristics, such as tumour volume, size, entity, and age or gender on permutation entropy (PeEn). We conducted retrospective analysis of the ECoG data of 16 patients, who underwent awake craniotomies because of left-sided brain tumours at our centre between 2014 and 2016. PeEn could be easily calculated and compared using frontal and parietal cortical electrodes. A comparison of PeEn scores showed significantly higher values in awake patients than in patients under anaesthesia (p ≤ 0.004) and significantly higher ones in the state of transition than under general anaesthesia (p = 0.023). PeEn scores in frontal and parietal leads did not differ significantly, making them both applicable for continuous surveillance during brain surgery. None of the following clinical characteristics showed significant correlation with PeEn scores: tumour volume, WHO grade, first or recurrent tumour, gender, and sex. Being 50 years or older led to significantly lower values in parietal leads but not in frontal leads. ECoG and a consecutive analysis of PeEn are feasible and suitable for the continuous surveillance of patients during awake craniotomies. Hence, the analysis is not influenced by patients’ clinical characteristics.
Laser speckle decorrelation time-based platelet function testing in microfluidic system
Authors: Jeon Hee-Jae , Qureshi Muhammad Mohsin , Lee Seung Yeob , Badadhe Jaya Dilip , Cho Heejoo , Chung Euiheon 
Published: November 2019

AbstractPlatelet aggregation and adhesion are critically involved in both normal hemostasis and thrombosis during vascular injury. Before any surgery, it is important to identify the number of platelets and their functionality to reduce the risk of bleeding; therefore, platelet function testing is a requirement. We introduce a novel evaluation method of assessing platelet function with laser speckle contrast imaging. The speckle decorrelation time (SDT) of the blood flowing through a microfluidic channel chip provides a quantitative measure of platelet aggregation. We compared SDTs of whole blood and platelet-poor blood, i.e., whole blood stripped of its buffy coat region, and found a marked reduction in decorrelation time for platelet-poor blood. The measured SDT of platelet-poor blood was 1.04 ± 0.21 ms, while that of whole blood was 2.64 ± 0.83 ms. To further characterize the sensitivity of our speckle decorrelation time-based platelet function testing (SDT-PFT), we added various agonists involved in platelet aggregation, including adenosine diphosphate (ADP), epinephrine (EPI), and arachidonic acid (AA). In this study, the results show that whole blood with ADP resulted in the largest SDT, followed by whole blood with AA, whole blood with EPI, whole blood without agonist, and platelet-poor blood with or without agonist. These findings show that SDT-PFT has the potential for rapid screening of bleeding disorders and monitoring of anti-platelet therapies with only a small volume of blood.
Prestin kinetics and corresponding frequency dependence augment during early development of the outer hair cell within the mouse organ of Corti
Authors: Bai Jun-Ping , Navaratnam Dhasakumar , Santos-Sacchi Joseph 
Published: November 2019

AbstractSeveral studies have documented the early development of OHC electromechanical behavior. The mechanical response (electromotility, eM) and its electrical correlate (nonlinear capacitance, NLC), resulting from prestin’s voltage-sensor charge movement, increase over the course of several postnatal days in altricial animals. They increase until about p18, near the time of peripheral auditory maturity. The correspondence of auditory capabilities and prestin function indicates that mature activity of prestin occurs at this time. One of the major requirements of eM is its responsiveness across auditory frequencies. Here we evaluate the frequency response of prestin charge movement in mice over the course of development up to 8 months. We find that in apical turn OHCs prestin’s frequency response increases during postnatal development and stabilizes when mature hearing is established. The low frequency component of NLC, within in situ explants, agrees with previously reported results on isolated cells. If prestin activity is independent of cochlear place, as might be expected, then these observations suggest that prestin activity somehow influences cochlear amplification at high frequencies in spite of its low pass behavior.
Preparation and characterization of polysaccharide - silica hybrid aerogels
Authors: Horvat Gabrijela , Pantić Milica , Knez Željko , Novak Zoran 
Published: November 2019

AbstractHybrid aerogels based on polysaccharides - silica were prepared and characterized. Tetramethylorthosilicate (TMOS) was used as inorganic precursor and various polysaccharides (alginate, pectin, xanthan and guar) were used as organic precursors. TMOS was added to polysaccharide aqueous solutions, resulting in stable wet gels. There were no additional chemicals or cross-linkers in the process. Produced wet gels were dried under supercritical conditions with CO2 in order to preserve their structure. The nitrogen adsorption results were compared to pure polysaccharide aerogels, prepared in our previous research. It is shown, that the addition of silica to pectin, xanthan, alginate and guar significantly improved their structural properties, primarily seen in the drastic increase of the surface area. Guar-silica aerogels reached the highest surface area of 679 m2 g−1. The thermal properties, including thermal degradation and thermal conductivity were highly improved. Among the prepared hybrid aerogels, pectin-silica samples had the lowest thermal conductivity of 19 mWm−1 K−1.
Facile in-situ growth of Ag/TiO2 nanoparticles on polydopamine modified bamboo with excellent mildew-proofing
Authors: Liu Gonggang , Lu Zhou , Zhu Xiu , Du Xiaoqing , Hu Jinbo , Chang Shanshan , Li Xianjun , Liu Yuan 
Published: November 2019

AbstractBamboo with the outstanding properties, such as good mechanical strength, fast growth rate and low growth cost, is considered as one of utilitarian structural nature materials. But bamboo is easy to get mildewed resulting in disfiguration and fungi corrosion. In this work, a facile method was developed to improve the mildew-proofing capability of bamboo. Mussel-inspired polydopamine (PDA) with biomimetic adhesion function and highly active functional groups was employed to immobilize highly-dispersed Ag and TiO2 nanoparticles on the surface of bamboo via an in-situ growth method. Integrating the uniform PDA coating, photocatalytic function of TiO2 nanoparticles and bactericidal role of Ag nanoparticles, the mildew-proofing capability of bamboo is enhanced significantly. The results show a non-covalent interaction is more likely to account for the binding mechanism of PDA to bamboo. And the prepared bamboo samples show good photocatalytic performance and have excellent resistance leachability. Meanwhile, the mildew-proofing property of prepared bamboo sample was greatly improved.
One-step synthesis of ball-shaped metal complexes with a main absorption band in the near-IR region
Authors: Furuyama Taniyuki , Shimasaki Fumika , Saikawa Natsumi , Maeda Hajime , Segi Masahito 
Published: November 2019

AbstractThe design of near-IR materials is highly relevant to energy and pharmaceutical sciences due to the high proportion of near-IR irradiation in the solar spectrum and the high penetration of near-IR light in biological samples. Here, we show the one-step synthesis of hexacoordinated ruthenium and iron complexes that exhibit a main absorption band in the near-IR region. For that purpose, novel tridentate ligands were prepared by condensation of two diimines and four cyanoaryl derivatives in the presence of ruthenium and iron template ions. This method was applied to a wide variety of cyanoaryl, diimine, and metal ion combinations. The relationship between the structure and the optical and electrochemical properties in the resulting complexes was examined, and the results demonstrated that these compounds represent novel near-IR materials whose physical properties can be controlled based on rational design guidelines. The intense absorption bands in the 700–900 nm region were assigned to metal-to-ligand charge transfer (MLCT) transitions, which should allow applications in materials with triplet excited states under irradiation with near-IR light.
3D Deformation Patterns of S Shaped Elastic Rods as a Pathogenesis Model for Spinal Deformity in Adolescent Idiopathic Scoliosis
Authors: Pasha Saba 
Published: November 2019

AbstractAdolescent idiopathic scoliosis (AIS) is a three-dimensional (3D) deformity of the spinal column in pediatric population. The primary cause of scoliosis remains unknown. The lack of such understanding has hampered development of effective preventive methods for management of this disease. A long-held assumption in pathogenesis of AIS is that the upright spine in human plays an important role in induction of scoliosis. Here, the variations in the sagittal curve of the scoliotic and non-scoliotic pediatric spines were used to study whether specific sagittal curves, under physiological loadings, are prone to 3D deformation leading to scoliosis. To this end, finite element models of the S shaped elastic rods, which their curves were derived from the radiographs of 129 sagittal spinal curves of adolescents with and without scoliosis, were generated. Using the mechanics of deformation in elastic rods, this study showed that the 3D deformation patterns of the two-dimensional S shaped slender elastic rods mimics the 3D patterns of the spinal deformity in AIS patients with the same S shaped sagittal spinal curve. On the other hand, the rods representing the non-scoliotic sagittal spinal curves, under the same mechanical loading, did not twist thus did not lead to a 3D deformation. This study provided strong evidence that the shape of the sagittal profile in individuals can be a leading cause of the 3D spinal deformity as is observed in the AIS population.
On the understanding and feasibility of “Breakthrough” Osmosis
Authors: Wu Jun Jie , Field Robert W. 
Published: November 2019

AbstractOsmosis is the movement of solvent across a permselective membrane induced by a solute-concentration gradient. Now in ‘Forward Osmosis’ it is empirically observed that the diffusion of the solute is counter to that of the solvent i.e. there is so-called “reverse salt diffusion”. However it has been recently suggested, in a theoretical paper, that if allowance is made for minor deviations from ideal semi-permeability then operation in an overlooked mode of “breakthrough” osmosis would be possible and importantly it would yield relatively large rates of osmosis. A consequential prediction was that in “breakthrough mode”, Pressure-Retarded Osmosis (PRO) would generate very high power densities exceeding those in the conventional mode by one order of magnitude. The practicality of this suggestion was explored and necessarily questions were then raised regarding the foundation of the Spiegler-Kedem-Katchalsky model.Arising from: Yaroshchuk, A., Sci. Rep. 7, 45168 (2017); https://doi.org/10.1038/srep45168