bluuebunny/crossref_metadata_2025_split huggingface dataset:
BRD4 promotes tumor progression and NF-κB/CCL2-dependent tumor-associated macrophage recruitment in GIST
Authors: Mu Jianfeng , Sun Pengfei , Ma Zhiming , Sun Pengda 
Published: December 2019

AbstractThe most commonly occurring sarcoma of the soft tissue is gastrointestinal stromal tumor (GIST). Treatment and prevention of the disease necessitate an understanding of the molecular mechanisms involved. However, the role of BRD4 in the progression of GIST is still unclear. While it is known there are abundant infiltrating tumor-associated macrophages (TAMs) in the tumor microenvironment, the exact role of these cells has yet to be studied. This work showed an upregulation of BRD4 in GIST that was associated with GIST prognosis. Through gain and loss of function studies, it was found that BRD4 promotes GIST growth and angiogenesis in vitro and in vivo. Mechanistically, BRD4 enhances CCL2 expression by activating the NF-κB signaling pathway. Furthermore, this CCL2 upregulation causes recruitment of macrophages into the tumor leading to tumor growth. A likely mechanism for interactions in the GIST microenvironment has been outlined by this work to show the role and potential use of BRD4 as a treatment target in GIST.
Coupling chemical mutagenesis to next generation sequencing for the identification of drug resistance mutations in Leishmania
Authors: Bhattacharya Arijit , Leprohon Philippe , Bigot Sophia , Padmanabhan Prasad Kottayil , Mukherjee Angana , Roy Gaétan , Gingras Hélène , Mestdagh Anais , Papadopoulou Barbara , Ouellette Marc 
Published: December 2019

AbstractCurrent genome-wide screens allow system-wide study of drug resistance but detecting small nucleotide variants (SNVs) is challenging. Here, we use chemical mutagenesis, drug selection and next generation sequencing to characterize miltefosine and paromomycin resistant clones of the parasite Leishmania. We highlight several genes involved in drug resistance by sequencing the genomes of 41 resistant clones and by concentrating on recurrent SNVs. We associate genes linked to lipid metabolism or to ribosome/translation functions with miltefosine or paromomycin resistance, respectively. We prove by allelic replacement and CRISPR-Cas9 gene-editing that the essential protein kinase CDPK1 is crucial for paromomycin resistance. We have linked CDPK1 in translation by functional interactome analysis, and provide evidence that CDPK1 contributes to antimonial resistance in the parasite. This screen is powerful in exploring networks of drug resistance in an organism with diploid to mosaic aneuploid genome, hence widening the scope of its applicability.
CE-QUAL-W2 model of dam outflow elevation impact on temperature, dissolved oxygen and nutrients in a reservoir
Authors: Lindenschmidt Karl-Erich , Carr Meghan K. , Sadeghian Amir , Morales-Marin Luis 
Published: December 2019

AbstractDams are typically designed to serve as flood protection, provide water for irrigation, human and animal consumption, and harness hydropower. Despite these benefits, dam operations can have adverse effects on in-reservoir and downstream water temperature regimes, biogeochemical cycling and aquatic ecosystems. We present a water quality dataset of water withdrawal scenarios generated after implementing the 2D hydrodynamic and water quality model, CE-QUAL-W2. The scenarios explore how six water extraction scenarios, starting at 5 m above the reservoir bottom at the dam and increasing upward at 10 m intervals to 55 m, influence water quality in Lake Diefenbaker reservoir, Saskatchewan, Canada. The model simulates daily water temperature, dissolved oxygen, total phosphorus, phosphate as phosphorus, labile phosphorus, total nitrogen, nitrate as nitrogen, labile nitrogen, and ammonium at 87 horizontal segments and at 60 water depths during the 2011–2013 period. This dataset intends to facilitate a broader investigation of in-reservoir nutrient dynamics under dam operations, and to extend the understanding of reservoir nutrient dynamics globally.
A global database of historic and real-time flood events based on social media
Authors: de Bruijn Jens A. , de Moel Hans , Jongman Brenden , de Ruiter Marleen C. , Wagemaker Jurjen , Aerts Jeroen C. J. H. 
Published: December 2019

AbstractEarly event detection and response can significantly reduce the societal impact of floods. Currently, early warning systems rely on gauges, radar data, models and informal local sources. However, the scope and reliability of these systems are limited. Recently, the use of social media for detecting disasters has shown promising results, especially for earthquakes. Here, we present a new database for detecting floods in real-time on a global scale using Twitter. The method was developed using 88 million tweets, from which we derived over 10,000 flood events (i.e., flooding occurring in a country or first order administrative subdivision) across 176 countries in 11 languages in just over four years. Using strict parameters, validation shows that approximately 90% of the events were correctly detected. In countries where the first official language is included, our algorithm detected 63% of events in NatCatSERVICE disaster database at admin 1 level. Moreover, a large number of flood events not included in NatCatSERVICE were detected. All results are publicly available on www.globalfloodmonitor.org.
Diagnostic performance of hematological discrimination indices to discriminate between βeta thalassemia trait and iron deficiency anemia and using cluster analysis: Introducing two new indices tested in Iranian population
Authors: Jahangiri Mina , Rahim Fakher , Malehi Amal Saki 
Published: December 2019

AbstractAlthough the discrimination between β-thalassemia trait (βTT) and Iron deficiency anemia (IDA) is important clinically, but it is challenging and normally difficult; so if a patient with IDA is diagnosed as βTT, then it is deprived of iron therapy. This study purpose was to evaluate the 26 different discriminating indices diagnostic function in patients with microcytic anemia by using accuracy measures, and also recommending two distinct new discriminating indices as well. In this study, 907 patients were enrolled with the ages over 18-year-old with either βTT or IDA. Twenty-six discrimination indices diagnostic performance presented in earlier studies, and two new indices were introduced in this study (CRUISE index and index26) in order to evaluate the differential between βTT and IDA by using accuracy measures. 537 (59%) patients with βTT (299 (56%) women, and 238 (44%) men), and also 370 (41%) patients with IDA (293 (79%) women, and 77 (21%) men) were participated in this study for evaluating the 28 discrimination indices diagnostic performance. Two new introduced indices (CRUISE index and index26) have better performance than some discrimination indices. Indices with the amount of AUC higher than 0.8 had very appropriate diagnostic accuracy in discrimination between βTT and IDA, and also CRUISE index has good diagnostic accuracy, too. The present study was also the first cluster analysis application in order to identify the homogeneous subgroups of different indices with similar diagnostic function. In addition, new indices that offered in this study have presented a relatively closed diagnostic performance by using cluster analysis for the different indices described in earlier studies. Thus, we suggest the using of cluster analysis in order to determine differential indices with similar diagnostic performances.
Inside or outside: Evaluation of the efficiency enhancement of OLEDs with applied external scattering layers
Authors: Ang Pen Yiao , Will Paul-Anton , Lenk Simone , Fischer Axel , Reineke Sebastian 
Published: December 2019

AbstractImproving the efficiency of organic light-emitting diodes (OLEDs) by enhancing light outcoupling is common practise and remains relevant as not all optical losses can be avoided. Especially, externally attached scattering layers combine several advantages. They can significantly increase the performance and neither compromise the electric operation nor add high costs during fabrication. Efficiency evaluations of external scattering layers are often done with lab scale OLEDs. In this work we therefore study different characterization techniques of red, green and blue lab scale OLEDs with attached light scattering foils comprising TiO2 particles. Although we observe an increased external quantum efficiency (EQE) with scattering foils, our analysis indicates that areas outside the active area have a significant contribution. This demonstrates that caution is required when efficiency conclusions are transferred to large area applications, for which effects that scale with the edges become less significant. We propose to investigate brightness profiles additionally to a standard EQE characterizations as latter only work if the lateral scattering length is much smaller than the width of the active area of the OLED. Our results are important to achieve more reliable predictions as well as a higher degree of comparability between different research groups in future.
The effects of psychosocial stress on intergroup resource allocation
Authors: Schweda Adam , Faber Nadira Sophie , Crockett Molly J. , Kalenscher Tobias 
Published: December 2019

AbstractStress changes our social behavior. Traditionally, stress has been associated with “fight-or-flight” – the tendency to attack an aggressor, or escape the stressor. But stress may also promote the opposite pattern, i.e., “tend-and-befriend” – increased prosociality toward others. It is currently unclear which situational or physiological factors promote one or the other. Here, we hypothesized that stress stimulates both tendencies, but that fight-or-flight is primarily directed against a potentially hostile outgroup, moderated by rapid-acting catecholamines, while tend-and-befriend is mainly shown towards a supportive ingroup, regulated by cortisol. To test this hypothesis, we measured stress-related neurohormonal modulators and sex hormones in male and female participants who were exposed to a psychosocial stressor, and subsequently played an intergroup social dilemma game in which they could reveal prosocial motives towards an ingroup (ingroup-love) and hostility towards an outgroup (outgroup-hate). We found no significant effects of stress on social preferences, but stress-related heart-rate increases predicted outgroup-hostile behavior. Furthermore, when controlling for testosterone, cortisol was associated with increased ingroup-love. Other-regarding behavior was overall higher in male than female participants. Our mixed results are of interest to scholars of the effects of stress on prosocial and aggressive behavior, but call for refinement in future replications.
Association of smoking and physical inactivity with MRI derived changes in cardiac function and structure in cardiovascular healthy subjects
Authors: Schafnitzel Anina , Lorbeer Roberto , Bayerl Christian , Patscheider Hannah , Auweter Sigrid D. , Meisinger Christa , Heier Margit , Ertl-Wagner Birgit , Reiser Maximilian , Peters Annette , Bamberg Fabian , Hetterich Holger 
Published: December 2019

AbstractWe aimed to investigate the association of smoking and physical exercise on ventricular function and structure, determined by cardiac magnetic resonance imaging (CMR), in subjects without known cardiovascular diseases. A total of 381 participants (median age 57 years) of the Cooperative Health Research in the Region of Augsburg (KORA) FF4 cohort underwent CMR. The participants’ smoking and sporting habits were measured by a questionnaire. Physical inactivity was associated with a reduction of left ventricular ejection fraction (LV-EF), stroke volume, early diastolic peak filling rate and peak ejection rate of the left ventricle as well as right ventricular stroke volume. LV-EF was reduced in subjects with almost no physical activity compared to subjects with regular physical activity (68.4%, 95%CI 66.8–70.1% vs. 70.8%, 95%CI 69.2–72.3%, p < 0,05). Smokers had lower right ventricular end-diastolic volumes (80.6 ml/m², 95%CI 76.7–84.5 ml/m²; never-smokers: 85.5 ml/m², 95%CI 82.6–88.3 ml/m²; p < 0.05) but higher extracellular volume fractions (ECV) and fibrosis volumes (34.3 ml, 95%CI 32.5–36.0 ml, vs. 31.0 ml, 95%CI 29.6–32.3 ml, p < 0.01). We conclude that asymptomatic individuals without known cardiovascular diseases show differences in cardiac function and structure depending on their physical activity and smoking habits. This underlines the importance of prevention and health education.
Lesion Network Localization of Seizure Freedom following MR-guided Laser Interstitial Thermal Ablation
Authors: Mithani Karim , Boutet Alexandre , Germann Jurgen , Elias Gavin J. B. , Weil Alexander G. , Shah Ashish , Guillen Magno , Bernal Byron , Achua Justin K. , Ragheb John , Donner Elizabeth , Lozano Andres M. , Widjaja Elysa , Ibrahim George M. 
Published: December 2019

AbstractTreatment-resistant epilepsy is a common and debilitating neurological condition, for which neurosurgical cure is possible. Despite undergoing nearly identical ablation procedures however, individuals with treatment-resistant epilepsy frequently exhibit heterogeneous outcomes. We hypothesized that treatment response may be related to the brain regions to which MR-guided laser ablation volumes are functionally connected. To test this, we mapped the resting-state functional connectivity of surgical ablations that either resulted in seizure freedom (N = 11) or did not result in seizure freedom (N = 16) in over 1,000 normative connectomes. There was no difference seizure outcome with respect to the anatomical location of the ablations, and very little overlap between ablation areas was identified using the Dice Index. Ablations that did not result in seizure-freedom were preferentially connected to a number of cortical and subcortical regions, as well as multiple canonical resting-state networks. In contrast, ablations that led to seizure-freedom were more functionally connected to prefrontal cortices. Here, we demonstrate that underlying normative neural circuitry may in part explain heterogenous outcomes following ablation procedures in different brain regions. These findings may ultimately inform target selection for ablative epilepsy surgery based on normative intrinsic connectivity of the targeted volume.
Terminal Schwann cell and vacant site mediated synapse elimination at developing neuromuscular junctions
Authors: Jung Jae Hoon , Smith Ian , Mikesh Michelle 
Published: December 2019

AbstractSynapses undergo transition from polyinnervation by multiple axons to single innervation a few weeks after birth. Synaptic activity of axons and interaxonal competition are thought to drive this developmental synapse elimination and tested as key parameters in quantitative models for further understanding. Recent studies of muscle synapses (endplates) show that there are also terminal Schwann cells (tSCs), glial cells associated with motor neurons and their functions, and vacant sites (or vacancies) devoid of tSCs and axons proposing tSCs as key effectors of synapse elimination. However, there is no quantitative model that considers roles of tSCs including vacancies. Here we develop a stochastic model of tSC and vacancy mediated synapse elimination. It employs their areas on individual endplates quantified by electron microscopy-based analyses assuming that vacancies form randomly and are taken over by adjacent axons or tSCs. The model reliably reproduced synapse elimination whereas equal or random probability models, similar to classical interaxonal competition models, did not. Furthermore, the model showed that synapse elimination is accelerated by enhanced synaptic activity of one axon and also by increased areas of vacancies and tSCs suggesting that the areas are important structural correlates of the rate of synapse elimination.
Surface ocean pH and buffer capacity: past, present and future
Authors: Jiang Li-Qing , Carter Brendan R. , Feely Richard A. , Lauvset Siv K. , Olsen Are 
Published: December 2019

AbstractThe ocean’s chemistry is changing due to the uptake of anthropogenic carbon dioxide (CO2). This phenomenon, commonly referred to as “Ocean Acidification”, is endangering coral reefs and the broader marine ecosystems. In this study, we combine a recent observational seawater CO2 data product, i.e., the 6th version of the Surface Ocean CO2 Atlas (1991–2018, ~23 million observations), with temporal trends at individual locations of the global ocean from a robust Earth System Model to provide a high-resolution regionally varying view of global surface ocean pH and the Revelle Factor. The climatology extends from the pre-Industrial era (1750 C.E.) to the end of this century under historical atmospheric CO2 concentrations (pre-2005) and the Representative Concentrations Pathways (post-2005) of the Intergovernmental Panel on Climate Change (IPCC)’s 5th Assessment Report. By linking the modeled pH trends to the observed modern pH distribution, the climatology benefits from recent improvements in both model design and observational data coverage, and is likely to provide improved regional OA trajectories than the model output could alone, therefore, will help guide the regional OA adaptation strategies. We show that air-sea CO2 disequilibrium is the dominant mode of spatial variability for surface pH, and discuss why pH and calcium carbonate mineral saturation states, two important metrics for OA, show contrasting spatial variability.
Bi-functional IgG-lysosomal enzyme fusion proteins for brain drug delivery
Authors: Boado Ruben J. , Lu Jeff Zhiqiang , Hui Eric Ka-Wai , Lin Huilan , Pardridge William M. 
Published: December 2019

AbstractMost lysosomal storage disorders affect the central nervous system. However, lysosomal enzymes do not cross the blood-brain barrier (BBB), and intravenous enzyme infusion is not effective for the brain. Lysosomal enzymes can be re-engineered for BBB transport as IgG-enzyme fusion proteins, where the IgG domain is a monoclonal antibody (MAb) against an endogenous BBB receptor/transporter, and which acts as a molecular Trojan horse to deliver the enzyme to brain. However, the problem is retention of high enzyme activity following enzyme fusion to the IgG. The present investigation shows this is possible with a versatile approach that employs fusion of the enzyme to either the IgG heavy chain or light chain using a long flexible linker. The model IgG is a chimeric monoclonal antibody (MAb) against the human insulin receptor (HIR). The enzyme activity of the HIRMAb-enzyme fusion protein is preserved for hexosaminidase A, which is mutated in Tay Sachs disease, for protein palmitoylthioesterase-1, which is mutated in Batten disease type 1, acid sphingomyelinase, which is mutated in Niemann Pick disease type A, and beta galactosidase-1, which is mutated in GM1 gangliosidosis.
Host density and parasitoid presence interact and shape the outcome of a tritrophic interaction on seeds of wild lima bean
Authors: Cuny Maximilien A. C. , Traine Juan , Bustos-Segura Carlos , Benrey Betty 
Published: December 2019

AbstractThe interaction between the seed beetle Zabrotes subfasciatus and its parasitoid Stenocorse bruchivora, was investigated on seeds of two populations of wild lima bean, Phaseolus lunatus. By manipulating the number of beetle larvae per seed and the presence of parasitoids, we determined how factors related to beetle larvae density, the seed in which they feed and the parasitoid, may interact and affect host and parasitoid survival. Results showed that an increase in larval beetle density had a negative impact on beetle performance. This effect cascaded up to parasitoids, high larval density strongly reduced parasitoid emergence. Also, parasitoid presence resulted in faster beetle development and lower female weight. An interactive effect between larval host density and parasitoid presence affected the number of insects that emerged from the seeds. Beetle performance was better in the bean population with the largest seeds, while parasitoid emergence was the lowest in these seeds. This study shows that the impact of parasitoids on seed beetles is contingent on the interaction between density-mediated (direct mortality) and trait-mediated (e.g. non-consumptive) effects. Indirect trait-mediated effects of natural enemies are likely prevalent across insect communities, understanding their role in driving host-parasitoid interactions can have important implications for biological control.
Monolithic integration of visible GaAs and near-infrared InGaAs for multicolor photodetectors by using high-throughput epitaxial lift-off toward high-resolution imaging systems
Authors: Geum Dae-Myeong , Kim SangHyeon , Kim Seong Kwang , Kang SooSeok , Kyhm JiHoon , Song Jindong , Choi Won Jun , Yoon Euijoon 
Published: December 2019

AbstractIn this study, multicolor photodetectors (PDs) fabricated by using bulk p-i-n-based visible GaAs and near-infrared InGaAs structures were monolithically integrated through a high-throughput epitaxial lift-off (ELO) process. To perform multicolor detection in integrated structures, GaAs PDs were transferred onto InGaAs PDs by using a Y2O3 bonding layer to simultaneously detect visible and near-infrared photons and minimize the optical loss. As a result, it was found that the GaAs top PD and InGaAs bottom PD were vertically aligned without tilting in x-ray diffraction (XRD) measurement. A negligible change in the dark currents for each PD was observed in comparison with reference PDs through electrical characterization. Furthermore, through optical measurements and simulation, photoresponses were clearly revealed in the visible and near-infrared band for the material’s absorption region, respectively. Finally, we demonstrated the simultaneous multicolor detection of the visible and near-infrared region,which implies individual access to each PD without mutual interference. These results are a significant improvement for the fabrication of multicolor PDs that enables the formation of bulk-based multicolor PDs on a single substrate with a high pixel density and nearly perfect vertical alignment for high-resolution multicolor imaging.
A novel shaped-controlled fabrication of nanopore and its applications in quantum electronics
Authors: Chen Chien-Han , Chang Xuyan , Wu Cen-Shawn 
Published: December 2019

AbstractHigh-intensity (107–108 A m−2) electron beams can be used to fabricate nanoscale pores. This approach enables real-time observation of nanopore drilling and precise control of the diameter of the nanopore. Nevertheless, it is not suitable for tuning the nanopore’s sidewall shape. In this study, we demonstrate the use of low-intensity electron beams to fabricate nanopores on a silicon nitride (SiNx) membrane. This technique allows the precise adjustment of the nanopore dimension and the shaping of its three-dimensional (3D) nanostructure. The 3D structures of the nanopore were evaluated by electron tomography, and series of oblique images were used in reconstructing the 3D images of nanopores using a weighted back-projection method. The sidewall shape of the nanopore was observed at different electron-beam conditions, and the formation mechanism was elucidated based on these results. The nanopore fabricated with this technique can be used as a template to develop electronics at the nanoscale based on which a quantum-dot device can be prepared with a simple evaporation process. The measured results show that the device can resolve well-defined electronic states that are characteristic for the behaviors of the quantum-dot device.