bluuebunny/crossref_metadata_2025_split huggingface dataset:
The productivity-biodiversity relationship varies across diversity dimensions
Authors: Brun Philipp , Zimmermann Niklaus E. , Graham Catherine H. , Lavergne Sébastien , Pellissier Loïc , Münkemüller Tamara , Thuiller Wilfried 
Published: December 2019

AbstractUnderstanding the processes that drive the dramatic changes in biodiversity along the productivity gradient remains a major challenge. Insight from simple, bivariate relationships so far has been limited. We combined >11,000 community plots in the French Alps with a molecular phylogeny and trait information for >1200 plant species to simultaneously investigate the relationships between all major biodiversity dimensions and satellite-sensed productivity. Using an approach that tests for differential effects of species dominance, species similarity and the interplay between phylogeny and traits, we demonstrate that unimodal productivity–biodiversity relationships only dominate for taxonomic diversity. In forests, trait and phylogenetic diversity typically increase with productivity, while in grasslands, relationships shift from unimodal to declining with greater land-use intensity. High productivity may increase trait/phylogenetic diversity in ecosystems with few external constraints (forests) by promoting complementary strategies, but under external constraints (managed grasslands) successful strategies are similar and thus the best competitors may be selected.
A non-spatial account of place and grid cells based on clustering models of concept learning
Authors: Mok Robert M. , Love Bradley C. 
Published: December 2019

AbstractOne view is that conceptual knowledge is organized using the circuitry in the medial temporal lobe (MTL) that supports spatial processing and navigation. In contrast, we find that a domain-general learning algorithm explains key findings in both spatial and conceptual domains. When the clustering model is applied to spatial navigation tasks, so-called place and grid cell-like representations emerge because of the relatively uniform distribution of possible inputs in these tasks. The same mechanism applied to conceptual tasks, where the overall space can be higher-dimensional and sampling sparser, leading to representations more aligned with human conceptual knowledge. Although the types of memory supported by the MTL are superficially dissimilar, the information processing steps appear shared. Our account suggests that the MTL uses a general-purpose algorithm to learn and organize context-relevant information in a useful format, rather than relying on navigation-specific neural circuitry.
Dynamic respiratory muscle function in late-onset Pompe disease
Authors: Smith Barbara K. , Allen Shannon , Mays Samantha , Martin A. Daniel , Byrne Barry J. 
Published: December 2019

AbstractMaximal inspiratory pressure (PIMAX) reflects inspiratory weakness in late-onset Pompe disease (LOPD). However, static pressure tests may not reveal specific respiratory muscle adaptations to disruptions in breathing. We hypothesized that dynamic respiratory muscle functional tests reflect distinct ventilatory compensations in LOPD. We evaluated LOPD (n = 7) and healthy controls (CON, n = 7) during pulmonary function tests, inspiratory endurance testing, dynamic kinematic MRI of the thorax, and ventilatory adjustments to single-breath inspiratory loads (inspiratory load compensation, ILC). We observed significantly lower static and dynamic respiratory function in LOPD. PIMAX, spirometry, endurance time, and maximal diaphragm descent were significantly correlated. During single-breath inspiratory loads, inspiratory time and airflow acceleration increased to preserve volume, and in LOPD, the response magnitudes correlated to maximal chest wall kinematics. The results indicate that changes in diaphragmatic motor function and strength among LOPD subjects could be detected through dynamic respiratory testing. We concluded that neuromuscular function significantly influenced breathing endurance, timing and loading compensations.
A genomic predictor of lifespan in vertebrates
Authors: Mayne Benjamin , Berry Oliver , Davies Campbell , Farley Jessica , Jarman Simon 
Published: December 2019

AbstractBiological ageing and its mechanistic underpinnings are of immense biomedical and ecological significance. Ageing involves the decline of diverse biological functions and places a limit on a species’ maximum lifespan. Ageing is associated with epigenetic changes involving DNA methylation. Furthermore, an analysis of mammals showed that the density of CpG sites in gene promoters, which are targets for DNA methylation, is correlated with lifespan. Using 252 whole genomes and databases of animal age and promotor sequences, we show a pattern across vertebrates. We also derive a predictive lifespan clock based on CpG density in a selected set of promoters. The lifespan clock accurately predicts maximum lifespan in vertebrates (R2 = 0.76) from the density of CpG sites within only 42 selected promoters. Our lifespan clock provides a wholly new method for accurately estimating lifespan using genome sequences alone and enables estimation of this challenging parameter for both poorly understood and extinct species.
Photogenerated Carrier Transport Properties in Silicon Photovoltaics
Authors: Uprety Prakash , Subedi Indra , Junda Maxwell M. , Collins Robert W. , Podraza Nikolas J. 
Published: December 2019

AbstractElectrical transport parameters for active layers in silicon (Si) wafer solar cells are determined from free carrier optical absorption using non-contacting optical Hall effect measurements. Majority carrier transport parameters [carrier concentration (N), mobility (μ), and conductivity effective mass (m*)] are determined for both the n-type emitter and p-type bulk wafer Si of an industrially produced aluminum back surface field (Al-BSF) photovoltaic device. From measurements under 0 and ±1.48 T external magnetic fields and nominally “dark” conditions, the following respective [n, p]-type Si parameters are obtained: N = [(3.6 ± 0.1) × 1018 cm−3, (7.6 ± 0.1) × 1015 cm−3]; μ = [166 ± 6 cm2/Vs, 532 ± 12 cm2/Vs]; and m* = [(0.28 ± 0.03) × me, (0.36 ± 0.02) × me]. All values are within expectations for this device design. Contributions from photogenerated carriers in both regions of the p-n junction are obtained from measurements of the solar cell under “light” 1 sun illumination (AM1.5 solar irradiance spectrum). From analysis of combined dark and light optical Hall effect measurements, photogenerated minority carrier transport parameters [minority carrier concentration (Δp or Δn) and minority carrier mobility (μh or μe)] under 1 sun illumination for both n- and p-type Si components of the solar cell are determined. Photogenerated minority carrier concentrations are [(7.8 ± 0.2) × 1016 cm−3, (2.2 ± 0.2) × 1014 cm−3], and minority carrier mobilities are [331 ± 191 cm2/Vs, 766 ± 331 cm2/Vs], for the [n, p]-type Si, respectively, values that are within expectations from literature. Using the dark majority carrier concentration and the effective equilibrium minority carrier concentration under 1 sun illumination, minority carrier effective lifetime and diffusion length are calculated in the n-type emitter and p-type wafer Si with the results also being consistent with literature. Solar cell device performance parameters including photovoltaic device efficiency, open circuit voltage, fill factor, and short circuit current density are also calculated from these transport parameters obtained via optical Hall effect using the diode equation and PC1D solar cell simulations. The calculated device performance parameters are found to be consistent with direct current-voltage measurement demonstrating the validity of this technique for electrical transport property measurements of the semiconducting layers in complete Si solar cells. To the best of our knowledge, this is the first method that enables determination of both minority and majority carrier transport parameters in both active layers of the p-n junction in a complete solar cell.
Multi-bandgap Solar Energy Conversion via Combination of Microalgal Photosynthesis and Spectrally Selective Photovoltaic Cell
Authors: Cho Changsoon , Nam Kibok , Kim Ga-Yeong , Seo Yeong Hwan , Hwang Tae Gyu , Seo Ji-Won , Kim Jae Pil , Han Jong-In , Lee Jung-Yong 
Published: December 2019

AbstractMicroalgal photosynthesis is a promising solar energy conversion process to produce high concentration biomass, which can be utilized in the various fields including bioenergy, food resources, and medicine. In this research, we study the optical design rule for microalgal cultivation systems, to efficiently utilize the solar energy and improve the photosynthesis efficiency. First, an organic luminescent dye of 3,6-Bis(4′-(diphenylamino)-1,1′-biphenyl-4-yl)-2,5-dihexyl-2,5-dihydropyrrolo3,4-c pyrrole -1,4-dione (D1) was coated on a photobioreactor (PBR) for microalgal cultivation. Unlike previous reports, there was no enhancement in the biomass productivities under artificial solar illuminations of 0.2 and 0.6 sun. We analyze the limitations and future design principles of the PBRs using photoluminescence under strong illumination. Second, as a multiple-bandgaps-scheme to maximize the conversion efficiency of solar energy, we propose a dual-energy generator that combines microalgal cultivation with spectrally selective photovoltaic cells (PVs). In the proposed system, the blue and green photons, of which high energy is not efficiently utilized in photosynthesis, are absorbed by a large-bandgap PV, generating electricity with a high open-circuit voltage (Voc) in reward for narrowing the absorption spectrum. Then, the unabsorbed red photons are guided into PBR and utilized for photosynthesis with high efficiency. Under an illumination of 7.2 kWh m−2 d−1, we experimentally verified that our dual-energy generator with C60-based PV can simultaneously produce 20.3 g m−2 d−1 of biomass and 220 Wh m−2 d−1 of electricity by utilizing multiple bandgaps in a single system.
Expression profiling of key pathways in rat liver after a one-year feeding trial with transgenic maize MON810
Authors: Stein Torsten , Ran Guangyao , Bohmer Marc , Sharbati Soroush , Einspanier Ralf 
Published: December 2019

AbstractIn a recent one-year feeding study, we observed no adverse effects on tissue level in organs of rats fed with the genetically-modified maize MON810. Here, we assessed RNA expression levels of 86 key genes of the apoptosis-, NF-кB-, DNA-damage response (DDR)-, and unfolded-protein response (UPR) pathways by RT-qPCR in the rat liver. Male and female rats were fed either with 33% MON810 (GMO), isogenic- (ISO), or conventional maize (CONV) and RNAs were quantified from eight rats from each of the six feeding groups. Only Birc2 transcript showed a significant (p ≤ 0.05) consistent difference of ≥1.5-fold between the GMO and ISO groups in both sexes. Unsupervised cluster analysis showed a strong separation of male and female rats, but no clustering of the feeding groups. Individual analysis of the pathways did not show any clustering of the male or female feeding groups either, though transcript levels of UPR pathway-associated genes caused some clustering of the male GMO and CONV feeding group samples. These differences were not seen between the GMO and ISO control or within the female cohort. Our data therefore does not support an adverse effect on rat liver RNA expression through the long-term feeding of MON810 compared to isogenic control maize.
A primate model of severe malarial anaemia: a comparative pathogenesis study
Authors: Raja Amber I. , Brickley Elizabeth B. , Taaffe Jessica , Ton Timmy , Zhao Zhen , Bock Kevin W. , Orr-Gonzalez Sachy , Thomas Marvin L. , Lambert Lynn E. , Moore Ian N. , Duffy Patrick E. 
Published: December 2019

AbstractSevere malarial anaemia (SMA) is the most common life-threatening complication of Plasmodium falciparum infection in African children. SMA is characterised by haemolysis and inadequate erythropoiesis, and is associated with dysregulated inflammatory responses and reduced complement regulatory protein levels (including CD35). However, a deeper mechanistic understanding of the pathogenesis requires improved animal models. In this comparative study of two closely related macaque species, we interrogated potential causal factors for their differential and temporal relationships to onset of SMA. We found that rhesus macaques inoculated with blood-stage Plasmodium coatneyi developed SMA within 2 weeks, with no other severe outcomes, whereas infected cynomolgus macaques experienced only mild/ moderate anaemia. The abrupt drop in haematocrit in rhesus was accompanied by consumption of haptoglobin (haemolysis) and poor reticulocyte production. Rhesus developed a greater inflammatory response than cynomolgus macaques, and had lower baseline levels of CD35 on red blood cells (RBCs) leading to a significant reduction in the proportion of CD35+ RBCs during infection. Overall, severe anaemia in rhesus macaques infected with P. coatneyi has similar features to SMA in children. Our comparisons are consistent with an association of low baseline CD35 levels on RBCs and of early inflammatory responses with the pathogenesis of SMA.
ERK1/2 drives IL-1β-induced expression of TGF-β1 and BMP-2 in torn tendons
Authors: Morita Wataru , Snelling Sarah J. B. , Wheway Kim , Watkins Bridget , Appleton Louise , Carr Andrew J. , Dakin Stephanie G. 
Published: December 2019

AbstractDiseased and injured tendons develop fibrosis, driven by factors including TGF-β, BMPs and CTGF. IL-1β and its signal transducer Erk1/2 are known to regulate TGF-β expression in animal tendons. We utilised tissues and cells isolated from patients with shoulder tendon tears and tendons of healthy volunteers to advance understanding of how inflammation induces fibrosis in diseased human tendons. ERK1/2 expression was reduced in torn (diseased) compared to healthy patient tendon tissues. We next investigated the fibrotic responses of tendon-derived cells isolated from healthy and diseased human tendon tissues in an inflammatory milieu. IL-1β treatment induced profound ERK1/2 signalling, TGFB1 and BMP2 mRNA expression in diseased compared to healthy tendon-derived cells. In the diseased cells, the ERK1/2 inhibitor (PD98059) completely blocked the IL-1β-induced TGFB1 and partially reduced BMP2 mRNA expression. Conversely, the same treatment of healthy cells did not modulate IL-1β-induced TGFB1 or BMP2 mRNA expression. ERK1/2 inhibition did not attenuate IL-1β-induced CTGF mRNA expression in healthy or diseased tendon cells. These findings highlight differences between ERK1/2 signalling pathway activation and expression of TGF-β1 and BMP-2 between healthy and diseased tendon tissues and cells, advancing understanding of inflammation induced fibrosis during the development of human tendon disease and subsequent repair.
FABP5 coordinates lipid signaling that promotes prostate cancer metastasis
Authors: Carbonetti Gregory , Wilpshaar Tessa , Kroonen Jessie , Studholme Keith , Converso Cynthia , d’Oelsnitz Simon , Kaczocha Martin 
Published: December 2019

AbstractProstate cancer (PCa) is defined by dysregulated lipid signaling and is characterized by upregulation of lipid metabolism-related genes including fatty acid binding protein 5 (FABP5), fatty acid synthase (FASN), and monoacylglycerol lipase (MAGL). FASN and MAGL are enzymes that generate cellular fatty acid pools while FABP5 is an intracellular chaperone that delivers fatty acids to nuclear receptors to enhance PCa metastasis. Since FABP5, FASN, and MAGL have been independently implicated in PCa progression, we hypothesized that FABP5 represents a central mechanism linking cytosolic lipid metabolism to pro-metastatic nuclear receptor signaling. Here, we show that the abilities of FASN and MAGL to promote nuclear receptor activation and PCa metastasis are critically dependent upon co-expression of FABP5 in vitro and in vivo. Our findings position FABP5 as a key driver of lipid-mediated metastasis and suggest that disruption of lipid signaling via FABP5 inhibition may constitute a new avenue to treat metastatic PCa.
Symmetric Talbot-Lau neutron grating interferometry and incoherent scattering correction for quantitative dark-field imaging
Authors: Kim Youngju , Valsecchi Jacopo , Kim Jongyul , Lee Seung Wook , Strobl Markus 
Published: December 2019

AbstractWe introduce the application of a symmetric Talbot-Lau neutron grating interferometer which provides a significantly extended autocorrelation length range essential for quantitative dark-field contrast imaging. The highly efficient set-up overcomes the limitation of the conventional Talbot-Lau technique to a severely limited micrometer range as well as the limitation of the other advanced dark-field imaging techniques in the nanometer regime. The novel set-up enables efficient and continuous dark-field contrast imaging providing quantitative small-angle neutron scattering information for structures in a regime from some tens of nanometers to several tens of micrometers. The quantitative analysis enabled in and by such an extended range is demonstrated through application to reference sample systems of the diluted polystyrene particle in aqueous solutions. Here we additionally demonstrate and successfully discuss the correction for incoherent scattering. This correction results to be necessary to achieve meaningful quantitative structural results. Furthermore, we present the measurements, data modelling and analysis of the two distinct kinds of cohesive powders enabled by the novel approach, revealing the significant structural differences of their fractal nature.
Effect of a Dual PPAR α/γ agonist on Insulin Sensitivity in Patients of Type 2 Diabetes with Hypertriglyceridemia- Randomized double-blind placebo-controlled trial
Authors: Jain Nimisha , Bhansali Shobhit , Kurpad Anura V. , Hawkins Meredith , Sharma Akhilesh , Kaur Sandeep , Rastogi Ashu , Bhansali Anil 
Published: December 2019

AbstractSaroglitazar is a dual PPAR-α/γ agonist approved for the treatment of diabetic dyslipidemia. In addition to reduction in atherogenic lipids, it may also contribute to improvement in insulin sensitivity through PPAR-α/γ agonism, which remains unexplored. We conducted a randomized, double-blind, placebo-controlled trial in treatment-naive T2DM individuals with serum triglyceride >150 mg/dL. Participants were randomized to receive either saroglitazar 4 mg or placebo (1:1) daily for 4 months (n = 30). Insulin sensitivity (SIclamp) was studied using hyperinsulinemic-euglycemic clamp at baseline and at 4 months. We observed a significant reduction in TG (p = 0.001), HbA1c (p = 0.019) and fasting plasma glucose (p = 0.019) and significant increase in HDL-C levels (p < 0.01) with saroglitazar compared to placebo. Further, patients on saroglitazar had a greater improvement in SIclamp (p = 0.026) with the effect persisting despite adjusting for baseline weight, TG, HDL-C and HbA1c (p = 0.002). This was accompanied with significant increase in HOMA-β (p = 0.01) in the saroglitazar group and change in HOMA-β showed a trend towards significance with SIclamp (r = 0.503, p = 0.056). However, change in SIclamp did not significantly correlate with reduction in HbA1c and TG. We conclude that saroglitazar effectively reduces hypertriglyceridemia and improves insulin sensitivity along with β-cell function by reduction in gluco-lipotoxicity and possibly directly through PPAR-γ agonism in patients ofT2DM with hypertriglyceridemia.
Repolarization of Ferroelectric Superlattices BaZrO3/BaTiO3
Authors: Sidorkin A. S. , Nesterenko L. P. , Gagou Y. , Saint-Gregoire P. , Vorotnikov E. V. , Pakhomov A. Yu. , Popravko N. G. 
Published: December 2019

AbstractWith the use of the modified Sawyer-Tower scheme and Merz technique, studies were conducted on the repolarization characteristics of ferroelectric (BaZrO3/BaTiO3) superlattices on monocrystalline MgO substrate. Studies of temperature changes in the dielectric hysteresis loops indicated a sufficiently smooth decrease in spontaneous polarization compared with homogeneous barium titanate near the phase transition temperature of the superlattice. Experimental studies of switched currents have shown that the switching processes in the synthesized superlattices are implemented in two stages: activation motion (“creep” mode) and non-activation motion (slip mode). The presence of the activation switching stage and the numerical estimates show that with high probability, the movement of domain boundaries accomplishes the processes of switching in the studied superlattice. The threshold field separating the stated stages decreases with increasing temperature up to the Curie point of the superlattice, similar to the coercive field. Detection of the non-strictly exponential dependence of the switching current on the reverse field strength in the activation stage was modulated by the dependence with the power-law exponent for the applied electric field. Both techniques indicate that the studied superlattices have a small internal displacement field directed from the superlattice to the substrate.
Tracking of quiescence in Leishmania by quantifying the expression of GFP in the ribosomal DNA locus
Authors: Jara Marlene , Maes Ilse , Imamura Hideo , Domagalska Malgorzata A. , Dujardin Jean Claude , Arevalo Jorge 
Published: December 2019

AbstractUnder stressful conditions some microorganisms adopt a quiescent stage characterized by a reversible non or slow proliferative condition that allows their survival. This adaptation was only recently discovered in Leishmania. We developed an in vitro model and a biosensor to track quiescence at population and single cell levels. The biosensor is a GFP reporter gene integrated within the 18S rDNA locus, which allows monitoring the expression of 18S rRNA (rGFP expression). We showed that rGFP expression decreased significantly and rapidly during the transition from extracellular promastigotes to intracellular amastigotes and that it was coupled in vitro with a decrease in replication as measured by BrdU incorporation. rGFP expression was useful to track the reversibility of quiescence in live cells and showed for the first time the heterogeneity of physiological stages among the population of amastigotes in which shallow and deep quiescent stages may coexist. We also validated the use of rGFP expression as a biosensor in animal models of latent infection. Our models and biosensor should allow further characterization of quiescence at metabolic and molecular level.
Variation in the onset of CO2-induced anxiety in female Sprague Dawley rats
Authors: Améndola Lucía , Ratuski Anna , Weary Daniel M. 
Published: December 2019

AbstractCarbon dioxide (CO2) is commonly used to kill laboratory rats. Rats find CO2aversive and aversion varies between individuals, indicating that rats vary in CO2sensitivity. Healthy humans experience feelings of anxiety at concentrations similar to those avoided by rats, and these feelings are diminished by the administration of benzodiazepines. Our aim was to assess the effects of the benzodiazepine midazolam on individual thresholds of rat aversion to CO2. Six female Sprague Dawley rats were repeatedly exposed to CO2gradual-fill in approach-avoidance testing. The first three exposures were to a control-treatment followed by three exposures to midazolam (0.375 mg/kg). Within each treatment aversion to CO2was not affected by exposure number; however, tolerance increased from an average of 10.7% CO2avoided during control sessions, to 15.5% CO2avoided when treated with midazolam. These results indicate that rats experience anxiety when exposed to CO2, and that variation in rat CO2sensitivity is driven by individual differences in the onset of these feelings of anxiety. No rat tolerated CO2concentrations required to induce loss of consciousness.