bluuebunny/crossref_metadata_2025_split huggingface dataset:
Investigation of the response of tear-film neutrophils to interleukin 8 and their sensitivity to centrifugation, fixation, and incubation
Authors: Jin Yutong , Jones Lyndon , Gorbet Maud 
Published: November 2020

AbstractDuring eye closure, a large number of neutrophils (polymorphonuclear neutrophils, PMNs) invade the ocular surface and are often referred to as tear-film PMNs. While immunophenotyping experiments have been performed on tear-film PMNs, the impact of commonly used experimental procedures on their phenotype as well as their response to interleukin-8 (IL-8), a physiological inflammatory mediator, have not yet been investigated. A gentle eye wash method was used to collect cells at home. In the morning upon awaking, participants washed their eyes with sterile phosphate buffer saline (PBS) and collected the runoff into a sterile polypropylene tube. The cell collection was then delivered to the lab within two hours. The effects of centrifugation, incubation and fixation with paraformaldehyde (PFA) before (pre-fixed staining) or after (post-fixed staining) incubation with antibodies were characterized. Tear-film PMNs as well as blood PMNs (used for comparison) were also stimulated with IL-8. To assess the reproducibility of cell collection and variability in receptor expression over time, participants were also asked to collect cells three times over a period of a month. The change in expression of surface receptors, CD11b, CD16, CD55, CD66b, important inflammatory and activation markers, and CD45 (PAN leukocyte marker) was assessed by flow cytometry. Fixing tear-film PMNs prior to the staining with antibodies resulted in a significant (fivefold or more) reduction in the expression of CD11b, CD16 and CD45 when compared to unfixed samples, while CD16 was the only receptor to undergo significant downregulation upon post-staining fixation. Furthermore, additional centrifugation step prior to antibody incubation as well as long (4 h) incubation at 37 °C resulted in significant reductions in expression of CD11b, CD16 and CD55 when compared to control samples. As opposed to blood PMNs, stimulating tear-film PMNs with IL-8 did not induce any significant changes in expression of CD11b, CD16, CD55 and CD66b. When working with collected tear-film PMNs, our results suggest that any additional centrifugation and incubation step should be avoided, or at least limited, and post fixation staining is recommended in order to preserve cell phenotype and cell integrity of tear film PMNs. Our study also adds further information on the reproducibility of the gentle eye wash as well as the inability of tear-film PMNs to modulate their surface receptors upon stimulation with IL-8. The latter may be due to prior exposure to IL-8, activation in the closed-eye environment, or a reduced ability to respond to inflammatory stimulus. Further mechanistic studies will be needed to gain a better understanding of the tear-film neutrophil phenotype.
Estimating possible bumblebee range shifts in response to climate and land cover changes
Authors: Suzuki-Ohno Yukari , Yokoyama Jun , Nakashizuka Tohru , Kawata Masakado 
Published: November 2020

AbstractWild bee decline has been reported worldwide. Some bumblebee species (Bombusspp.) have declined in Europe and North America, and their ranges have shrunk due to climate and land cover changes. In countries with limited historical and current occurrence data, it is often difficult to investigate bumblebee range shifts. Here we estimated the past/present distributions of six major bumblebee species in Japan with species distribution modeling using current occurrence data and past/present climate and land cover data. The differences identified between estimated past and present distributions indicate possible range shifts. The estimated ranges ofB. diversus,B. hypocrita,B. ignitus,B. honshuensis, andB. beaticolashrank over the past 26 years, but that ofB. ardensexpanded. The lower altitudinal limits of the estimated ranges became higher as temperature increased. When focusing on the effects of land cover change, the estimated range ofB. diversusslightly shrank due to an increase in forest area. Such increase in forest area may result from the abandonment of agricultural lands and the extension of the rotation time of planted coniferous forests and secondary forests. Managing old planted coniferous forests and secondary forests will be key to bumblebee conservation for adaptation to climate change.
Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome
Authors: Matsuki Yasuko , Matsuo Yoshitaka , Nakano Yu , Iwasaki Shintaro , Yoko Hideyuki , Udagawa Tsuyoshi , Li Sihan , Saeki Yasushi , Yoshihisa Tohru , Tanaka Keiji , Ingolia Nicholas T. , Inada Toshifumi 
Published: November 2020

AbstracteIF2α phosphorylation-mediated translational regulation is crucial for global translation repression by various stresses, including the unfolded protein response (UPR). However, translational control during UPR has not been demonstrated in yeast. This study investigated ribosome ubiquitination-mediated translational controls during UPR. Tunicamycin-induced ER stress enhanced the levels of ubiquitination of the ribosomal proteins uS10, uS3 and eS7. Not4-mediated monoubiquitination of eS7A was required for resistance to tunicamycin, whereas E3 ligase Hel2-mediated ubiquitination of uS10 was not. Ribosome profiling showed that the monoubiquitination of eS7A was crucial for translational regulation, including the upregulation of the spliced form of HAC1 (HAC1i) mRNA and the downregulation of Histidine triad NucleoTide-binding 1 (HNT1) mRNA. Downregulation of the deubiquitinating enzyme complex Upb3-Bre5 increased the levels of ubiquitinated eS7A during UPR in an Ire1-independent manner. These findings suggest that the monoubiquitination of ribosomal protein eS7A plays a crucial role in translational controls during the ER stress response in yeast.
Selection of sponge-associated bacteria with high potential for the production of antibacterial compounds
Authors: Riyanti  , Balansa Walter , Liu Yang , Sharma Abha , Mihajlovic Sanja , Hartwig Christoph , Leis Benedikt , Rieuwpassa Frets Jonas , Ijong Frans Gruber , Wägele Heike , König Gabriele M. , Schäberle Till F. 
Published: November 2020

AbstractThe potential of sponge-associated bacteria for the biosynthesis of natural products with antibacterial activity was evaluated. In a preliminary screening 108 of 835 axenic isolates showed antibacterial activity. Active isolates were identified by 16S rRNA gene sequencing and selection of the most promising strains was done in a championship like approach, which can be done in every lab and field station without expensive equipment. In a competition assay, strains that inhibited most of the other strains were selected. In a second round, the strongest competitors from each host sponge competed against each other. To rule out that the best competitors selected in that way represent similar strains with the same metabolic profile, BOX PCR experiments were performed, and extracts of these strains were analysed using metabolic fingerprinting. This proved that the strains are different and have various metabolic profiles, even though belonging to the same genus,i.e. Bacillus. Furthermore, it was shown that co-culture experiments triggered the production of compounds with antibiotic activity,i.e.surfactins and macrolactin A. Since many members of the genusBacilluspossess the genetic equipment for the biosynthesis of these compounds, a potential synergism was analysed, showing synergistic effects between C14-surfactin and macrolactin A against methicillin-resistantStaphylococcus aureus(MRSA).
Investigation of slow release of urea from biodegradable single- and double-layered hollow nanofibre yarns
Authors: Javazmi Leila , Low Tobias , Ash Gavin , Young Anthony 
Published: November 2020

AbstractUrea is the most common form of nitrogenous fertiliser. Recently, research has focused on the development of delivery systems to prolong fertiliser release and prevent fertiliser loss through leaching and volatilization. This study investigates and compares single- and double-layered hollow nanofibrous yarns as novel delivery systems to encapsulate and release urea. Single-layered hollow polyl-lactic acid (PLLA) nanofibre yarns loaded with urea fertiliser were fabricated using a customized electrospinning. Double-layered hollow nanofibre yarns were produced by electrospinning polyhydroxybutyrate (PHB) nanofibres as an outer layer, with urea-impregnated PLLA nanofibres as the inner layer. Scanning electron microscopy (SEM) with an energy-dispersive spectroscopy (EDS) was used to characterize the morphology of hollow electrospun nanofibre yarns. A total nitrogen instrument (TNM-1) was used to study the urea release from single- and double-layered hollow nanofibres yarn in water. A Carbon:Nitrogen (CN) elemental analyser determined encapsulated nitrogen in PLLA nanofibres samples. Results indicated that urea-impregnated double-layered hollow nanofibre yarns significantly started nitrogen releasing at much lower amount during first 12 h compared to single-layered hollow nanofibre yarns (P value = 0.000). In conclusion, double-layered hollow nanofibre yarn has potential as an effective alternative to current methods for the slow release of fertilisers and other plant-required chemicals.
Flexible and monolithically integrated multicolor light emitting diodes using morphology-controlled GaN microstructures grown on graphene films
Authors: Lee Keundong , Yoo Dongha , Oh Hongseok , Yi Gyu-Chul 
Published: November 2020

AbstractWe report flexible and monolithically integrated multicolor light-emitting diode (LED) arrays using morphology-controlled growth of GaN microstructures on chemical-vapor-deposited (CVD) graphene films. As the morphology-controlled growth template of GaN microstructures, we used position-controlled ZnO nanostructure arrays with different spacings grown on graphene substrates. In particular, we investigated the effect of the growth parameters, including micropattern spacings and growth time and temperature, on the morphology of the GaN microstructures when they were coated on ZnO nanostructures on graphene substrates. By optimizing the growth parameters, both GaN microrods and micropyramids formed simultaneously on the graphene substrates. Subsequent depositions of InGaN/GaN quantum well and p-GaN layers and n- and p-type metallization yielded monolithic integration of microstructural LED arrays on the same substrate, which enabled multicolor emission depending on the shape of the microstructures. Furthermore, the CVD graphene substrates beneath the microstructure LEDs facilitated transfer of the LED arrays onto any foreign substrate. In this study, Cu foil was used for flexible LEDs. The flexible devices exhibited stable electroluminescence, even under severe bending conditions. Cyclic bending tests demonstrated the excellent mechanical stability and reliability of the devices.
Mid-gestation low-dose LPS administration results in female-specific excessive weight gain upon a western style diet in mouse offspring
Authors: Dijkstra Dorieke J. , Verkaik-Schakel Rikst Nynke , Eskandar Sharon , Limonciel Alice , Stojanovska Violeta , Scherjon Sicco A. , Plösch Torsten 
Published: November 2020

AbstractGestational complications, including preeclampsia and gestational diabetes, have long-term adverse consequences for offspring’s metabolic and cardiovascular health. A low-grade systemic inflammatory response is likely mediating this. Here, we examine the consequences of LPS-induced gestational inflammation on offspring’s health in adulthood. LPS was administered to pregnant C57Bl/6J mice on gestational day 10.5. Maternal plasma metabolomics showed oxidative stress, remaining for at least 5 days after LPS administration, likely mediating the consequences for the offspring. From weaning on, all offspring was fed a control diet; from 12 to 24 weeks of age, half of the offspring received a western-style diet (WSD). The combination of LPS-exposure and WSD resulted in hyperphagia and increased body weight and body fat mass in the female offspring. This was accompanied by changes in glucose tolerance, leptin and insulin levels and gene expression in liver and adipose tissue. In the hypothalamus, expression of genes involved in food intake regulation was slightly changed. We speculate that altered food intake behaviour is a result of dysregulation of hypothalamic signalling. Our results add to understanding of how maternal inflammation can mediate long-term health consequences for the offspring. This is relevant to many gestational complications with a pro-inflammatory reaction in place.
Shifts in the developmental rate of spadefoot toad larvae cause decreased complexity of post-metamorphic pigmentation patterns
Authors: Hyeun-Ji Lee , Rendón Miguel Ángel , Liedtke Hans Christoph , Gomez-Mestre Ivan 
Published: November 2020

AbstractAmphibian larvae are plastic organisms that can adjust their growth and developmental rates to local environmental conditions. The consequences of such developmental alterations have been studied in detail, both at the phenotypic and physiological levels. While largely unknown, it is of great importance to assess how developmental alterations affect the pigmentation pattern of the resulting metamorphs, because pigmentation is relevant for communication, mate choice, and camouflage and hence influences the overall fitness of the toads. Here we quantify the variation in several aspects of the pigmentation pattern of juvenile spadefoot toads experimentally induced to accelerate their larval development in response to decreased water level. It is known that induced developmental acceleration comes at the cost of reduced size at metamorphosis, higher metabolic rate, and increased oxidative stress. In this study, we show that spadefoot toads undergoing developmental acceleration metamorphosed with a less complex, more homogeneous, darker dorsal pattern consisting of continuous blotches, compared to the more contrasted pattern with segregated blotches and higher fractal dimension in normally developing individuals, and at a smaller size. We also observed a marked effect of population of origin in the complexity of the pigmentation pattern. Complexity of the post-metamorphic dorsal pigmentation could therefore be linked to pre-metamorphic larval growth and development.
Differences of liver CT perfusion of blunt trauma treated with therapeutic embolization and observation management
Authors: Wong Yon-Cheong , Wang Li-Jen , Wu Cheng-Hsien , Chen Huan-Wu , Yuan Kuo-Ching , Hsu Yu-Pao , Lin Being-Chuan , Kang Shih-Ching 
Published: November 2020

AbstractMassive hepatic necrosis after therapeutic embolization has been reported. We employed a 320-detector CT scanner to compare liver perfusion differences between blunt liver trauma patients treated with embolization and observation. This prospective study with informed consent was approved by institution review board. From January 2013 to December 2016, we enrolled 16 major liver trauma patients (6 women, 10 men; mean age 34.9 ± 12.8 years) who fulfilled inclusion criteria. Liver CT perfusion parameters were calculated by a two-input maximum slope model. Of 16 patients, 9 received embolization and 7 received observation. Among 9 patients of embolization group, their arterial perfusion (78.1 ± 69.3 versus 163.1 ± 134.3 mL/min/100 mL, p = 0.011) and portal venous perfusion (74.4 ± 53.0 versus 160.9 ± 140.8 mL/min/100 mL, p = 0.008) were significantly lower at traumatic parenchyma than at non-traumatic parenchyma. Among 7 patients of observation group, only portal venous perfusion was significantly lower at traumatic parenchyma than non-traumatic parenchyma (132.1 ± 127.1 vs. 231.1 ± 174.4 mL/min/100 mL, p = 0.018). The perfusion index between groups did not differ. None had massive hepatic necrosis. They were not different in age, injury severity score and injury grades. Therefore, reduction of both arterial and portal venous perfusion can occur when therapeutic embolization was performed in preexisting major liver trauma, but hepatic perfusion index may not be compromised.
Anomalous electrical conduction and negative temperature coefficient of resistance in nanostructured gold resistive switching films
Authors: Mirigliano M. , Radice S. , Falqui A. , Casu A. , Cavaliere F. , Milani P. 
Published: November 2020

AbstractWe report the observation of non-metallic electrical conduction, resistive switching, and a negative temperature coefficient of resistance in nanostructured gold films above the electrical percolation and in strong-coupling regime, from room down to cryogenic temperatures (24 K). Nanostructured continuous gold films are assembled by supersonic cluster beam deposition of Au aggregates formed in the gas phase. The structure of the cluster-assembled films is characterized by an extremely high density of randomly oriented crystalline nanodomains, separated by grain boundaries and with a large number of lattice defects. Our data indicates that space charge limited conduction and Coulomb blockade are at the origin of the anomalous electrical behavior. The high density of extended defects and grain boundaries causes the localization of conduction electrons over the entire investigated temperature range.
Handicap theory is applied to females but not males in relation to mate choice in the stalk-eyed fly Sphyracephala detrahens
Authors: Takeda Koji , Furuta Tomoki , Hamada Masaki , Sato Yo , Taniguchi Kiichiro , Tanizawa Akihiro , Yagi Tomomasa , Adachi-Yamada Takashi 
Published: November 2020

AbstractHandicap theory explains that exaggeratedly developed sexual traits become handicaps but serve as honest signals of quality. Because very weak signals are less likely to provide benefits than to simply incur costs, it is interesting to elucidate how sexual traits are generated and developed during evolution. Many stalk-eyed fly species belonging to tribe Diopsini exhibit marked sexual dimorphism in their eye spans, and males with larger eye spans have larger bodies and reproductive capacities, which are more advantageous in terms of contests between males and acceptance for mating by females. In this study, we investigated the role of eye span in a more primitive species,Sphyracephala detrahens,in tribe Sphyracephalini with less pronounced sexual dimorphism. Male-male, female-female, and male–female pairs showed similar contests influenced by eye span, which was correlated with nutrition and reproductive ability in both sexes. During mating, males did not distinguish between sexes and chose individuals with larger eye spans, whereas females did not choose males. However, males with larger eye spans copulated repeatedly. These results indicate that, in this species, eye span with a small sexual difference does not function in sex recognition but affects contest and reproductive outcomes, suggesting the primitive state of sexual dimorphism.
Impacts of zinc oxide nano and bulk particles on redox-enzymes of the Punica granatum callus
Authors: Farghaly Fatma A. , Radi Abeer A. , Al-Kahtany Fatma A. , Hamada Afaf M. 
Published: November 2020

AbstractThe structure and function of cellular membranes were sustained by redox-enzymes. We studied the interaction between the oxidative stress caused by excessive accumulation of ZnO-nanoparticles (ZnO-NPs) in plants and the role of redox-enzymes that can alleviate this stress. The crude callus extract from pomegranate, which was treated with 0, 10, and 150 µg mL−1ZnO-NPs or bulk particles (ZnO-BPs), was applied to study the activity and kinetics of redox-enzymes. The elevated ZnO-NPs, enhanced the lipoxygenase and polyphenol oxidase activity, while the ZnO-BPs did not modify them. The activities of superoxide dismutase, catalase, and phenylalanine ammonia-lyase were induced under ZnO-NPs or BPs treatments, whilst the opposite trend of peroxidase was observed. Ascorbate peroxidase activity increased under ZnO-NPs treatments but decreased under ZnO-BPs. The kinetics activity of enzymes showed changes under different levels of NPs and BPs. Additionally, NPs or BPs treatments reduced the uptake of copper, iron, magnesium, but increased zinc accumulation in callus tissues. Meanwhile, these treatments enhanced the accumulation of manganese ions but did not affect the accumulation of potassium and phosphorous in ZnO-NPs or BPs-stressed calli. Collectively, these results gave a quantitative evaluation of the competition of zinc and other minerals on the carriers, and in addition, they provided a basis for how to control ZnO-NPs or BPs toxicity via redox-enzymes.
Enhanced bioelectrochemical treatment of petroleum refinery wastewater with Labaneh whey as co-substrate
Authors: Mohanakrishna Gunda , Abu-Reesh Ibrahim M. , Pant Deepak 
Published: November 2020

AbstractPetroleum refinery wastewater (PRW) that contains recalcitrant components as the major portion of constituents is difficult to treat by conventional biological processes. Microbial fuel cells (MFCs) which also produce renewable energy were found to be promising for the treatment of PRW. However, due to the high total dissolved solids and low organic matter content, the efficiency of the process is limited. Labaneh whey (LW) wastewater, having higher biodegradability and high organic matter was evaluated as co-substrate along with PRW in standard dual chambered MFC to achieve improved power generation and treatment efficiency. Among several concentrations of LW as co-substrate in the range of 5–30% (v/v) with PRW, 85:15 (PRW:LW) showed to have the highest power generation (power density (PD), 832 mW/m2), which is two times higher than the control with PRW as sole substrate (PD, 420 mW/m2). On the contrary, a maximum substrate degradation rate of 0.420 kg COD/m3-day (ξCOD, 63.10%), was registered with 80:20 feed. Higher LW ratios in PRW lead to the production of VFA which in turn gradually decreased the anolyte pH to below 4.5 (70:30 feed). This resulted in a drop in the performance of MFC with respect to power generation (274 mW/m2, 70:30 feed) and substrate degradation (ξCOD, 17.84%).
Unraveling response to temozolomide in preclinical GL261 glioblastoma with MRI/MRSI using radiomics and signal source extraction
Authors: Núñez Luis Miguel , Romero Enrique , Julià-Sapé Margarida , Ledesma-Carbayo María Jesús , Santos Andrés , Arús Carles , Candiota Ana Paula , Vellido Alfredo 
Published: November 2020

AbstractGlioblastoma is the most frequent aggressive primary brain tumor amongst human adults. Its standard treatment involves chemotherapy, for which the drug temozolomide is a common choice. These are heterogeneous and variable tumors which might benefit from personalized, data-based therapy strategies, and for which there is room for improvement in therapy response follow-up, investigated with preclinical models. This study addresses a preclinical question that involves distinguishing between treated and control (untreated) mice bearing glioblastoma, using machine learning techniques, from magnetic resonance-based data in two modalities: MRI and MRSI. It aims to go beyond the comparison of methods for such discrimination to provide an analytical pipeline that could be used in subsequent human studies. This analytical pipeline is meant to be a usable and interpretable tool for the radiology expert in the hope that such interpretation helps revealing new insights about the problem itself. For that, we propose coupling source extraction-based and radiomics-based data transformations with feature selection. Special attention is paid to the generation of radiologist-friendly visual nosological representations of the analyzed tumors.