bluuebunny/crossref_metadata_2025_split huggingface dataset:
Genetic Characterization of a Model Ciliopathy: Bardet–Biedl Syndrome
Authors: Kops Samantha A. , Kylat Ranjit I. , Bhatia Shanti , Seckeler Michael D. , Barber Brent J. , Bader Mohammad Y. 
Published: March 2020

AbstractBardet–Biedl syndrome (BBS) is a rare ciliopathy affecting multiple organ systems. Patients with BBS are usually diagnosed later in childhood when clinical features of the disease become apparent. In this article, we presented a case of BBS discovered by whole genome sequencing in a newborn with heterotaxy, duodenal atresia, and complex congenital heart disease. Early diagnosis is important not only for prognostication but also to explore ways to mitigate the cone–rod dysfunction and for exploring newer therapies. Our case highlights the importance of a high index of suspicion and the utility of advanced genetic testing to provide an early diagnosis for a rare disease.
The Role of Ischemia-modified Albumin as a Biomarker in Preeclampsia
Authors: Karaşin Süleyman Serkan , Çift Tayfur 
Published: March 2020

Abstract
Objective Ischemia-modified albumin (IMA)is a modified type of albumin protein that is formed under oxidative stress. This study aims to compare the levels of serum IMA between normotensive and preeclamptic pregnancies and to evaluate the relationship between the severity of the disease.
Methods A total of 90 pregnant women aged between 18 and 45 years participated in this cross-sectional study. The levels of serum IMA were measured by enzyme-linked immunosorbent assay in 30 preeclamptic pregnant women with the severe signs of the disease, 30 preeclamptic pregnant women, and 30 normotensive pregnant women.. The study was designed as a cross-sectional clinical study.
Results When the demographic characteristics were examined, statistically significant differences were found between the groups in terms of age, gestational week at birth and blood pressure. Age was higher in the preeclampsia with signs of severity group than in the normotensive group (p = 0.033). Pregnancy week was significantly the lowest in the preeclampsia with the severity signs group (p = 0.004). In normotensive patients, IMA levels were lower than in the preeclampsia groups (p < 0.001) but there was no significant difference in terms of severity of disease (p = 0.191). According to laboratory data; only the creatinine level was significantly different between the groups.
Conclusion The levels of serum IMA were higher in patients with preeclampsia than in healthy pregnancies. However, there was no significant correlation in terms of preeclampsia severity; more extensive, prospective and long-term studies are needed.
Effects of focus on form on primary CLIL students’ foreign language performance in task-based oral
interaction
Authors: Alfonso Pena Celia , Pladevall-Ballester Elisabet 
Published: March 2020

Abstract
In content and language integrated learning (CLIL) programmes, attention to language can be easily overlooked
behind the assumption that language learning will take place incidentally. This study aimed at analysing the effects of a balanced
integration of content and language on fifth graders’ foreign language (FL) oral performance. Two groups of participants had been
doing CLIL in the form of an Information and Communication Technology (ICT) subject as of first grade, and yet observations
revealed an important lack of focus on form in these lessons. CLIL materials and lessons that provided enough attention to
language were designed and implemented for three months only in one of the groups. Students were assessed on their FL fluency and
complexity before and after the treatment. Results revealed higher gains in speech rate and number of minimal contributions and a
significantly lower L1 reliance in the case of the treatment group.
Permanent vegetation distribution: indicators of watershed management
Authors: Wahyuningrum N 
Published: March 2020

Abstract
Watershed management aims to improve or restore and or protect the carrying capacity of watersheds, especially to maintain the preservation of water systems, increase land productivity and improve community welfare. This can be done by controlling the factors causing land degradation. Erosion is one of the causes of degradation can be controlled by managing land use to suit its capabilities. The more areas that are not suitable for their capability will reflect the failure of land management. The sloping area (slope > 15%) should be covered by permanent vegetation such as, are shrub, secondary forest, plantation forest, and plantation. If the proportion of sloping areas covered by permanent vegetation compared to the total sloping area is very small (<50%) then it can be said that land management activities are less successful, because, in reality, these areas are relatively more vulnerable to erosion. This condition provides information that in these erosion-prone areas, land cover needs to be improved. In this way in addition to the area, the distribution of permanent vegetation can also be known. The spatial distribution of permanent vegetation at sloping locations that are upstream of a watershed/sub-watershed can be seen clearly.
Identification of element at risk due to tidal flood hazard in Genuk Sub-District coastal area
Authors: Yoga A G H , Marfai M A , Hizbaron D R 
Published: March 2020

Abstract
The coastal area is a meeting point and a transition zone between land and sea. The morphology of the coastal areas, which is relatively flat and rich in the quality and quantity of natural resources makes the coastal area become centre of population growth. Population growth in coastal areas occurs rapidly and accompanied by potential coastal hazards alongside. Population growth is one factor that many elements at risk will be affected. The Semarang-Demak coastal area, especially at the downstream of Babon River, Genuk Sub-District, experienced the potential of tidal flood. The purposes of this study are to examine the distribution of element at risk due to tidal flood hazards. This research employed satellite image data processing and field surveys methods. First, the research analyzed tidal flood hazard using ArcGIS software and map algebra with a raster calculation tool. Second, it elaborated several elements at risk in the research area. The result of the study showed that the flood hazard index resulted in the distribution of areas affected by tidal floods covering the areas of Terboyo Kulon, Terboyo Wetan, Trimulyo, Banjardowo and Muktiharjo Lor. The largest area which affected by the tidal floods is in the Trimulyo Village (176.820 Ha with the number of hazard index 0.2; 185,364 Ha at the hazard index 0.4; 195,931 Ha at the hazard index 0.6; 205,393 Ha at the hazard index 0.8; and 210,361 Ha on the hazard index 1). While the smallest area which affected by the tidal floods is in Banjardowo and Muktiharjo Lor Sub-Districts. Then the research area the most exposed element at risk are population and its built-up environment, while active productive agriculture land also prominent.
Strengthening national adaptation in dealing with Mega Sea level rise migration in Indonesia
Authors: Lisan A R K , Putri R F 
Published: March 2020

Abstract
Sea level rise because of global climate change is underway, causing substantial threats for many coastal areas in the world. The threats such as displacement of people and disruptions of coastal habitats and environments are more immense in Indonesia – an archipelagic state possessing roughly 17,000 islands – as it is vulnerable geographically and economically. However, movement of people and coastal habitats and environments to rescue themselves can be considered an effort of adaptation as if it is succeeded. Thus, it needs for to be prepared and strengthened. Using a literature analysis by collecting and selecting data and information regarding to climate change, especially rising sea level and its adaptation in Indonesia, the author finds several facts and ways to strengthen migration processes. There are many issues that need for attention such as economy and livelihood, land availability, water security, food security, social – culture, infrastructure, health and the environment. To prepare and strengthen this adaptation (migration) processes, there are several measures can be done regarding to people impacted (get displaced), host communities and coastal habitats and environments. There are also some roles should be taken by governments to support and enhance the success of the migration.
Comparation of two climate methodologies on Lerma Chapala basin: moving mean and climate variability indices with RClimDex
Authors: Lazcarro MG Castro , Tristán A Cárdenas , Belitskaya V Davydova , Ovalle AG Castro , Putri R F 
Published: March 2020

Abstract
The objective of this study is the comparation of two climate methodologies with the next variables, average maximum and minimum temperatures, and precipitation, said another way, it was calculated by two different methods, the moving mean and climate change indices with complements of R software (RClimDex and RhTest) on Lerma Chapala basin, which is located. The data were analyzed for representative periods of 30 years since 1960 to 2016, which, were collected from National Water Commission due to compiling with control qualify. Finally, the results will help for supporting international climate variability report and demonstrated that independently the methodology the results are similar, it means, the select variables showed modifications through the time that causing drier environments.
The suitability level of bike-sharing station in Yogyakarta using SMCA technique
Authors: Kurniadhini F , Roychansyah M S 
Published: March 2020

Abstract
Yogyakarta is experiencing the increasing number of population (1,13%) from 2014 to 2017 that influences the rising number of motorized vehicles. Besides, it is also led by the easiness to access vehicles ownership in Yogyakarta. In 2017, Yogyakarta ranked fourth as the most congested city in Indonesia that indicates the importance of changing the transportation mode from private vehicles to public transportation. Through the mission of Yogyakarta to strengthen urban planning and environmental sustainability, it is necessary to implement green transportation along with transport demand management to reduce the disadvantages of road congestion in the city. Hence, bike-sharing system can be an option that provides new alternative mobility. However, the important thing to manage bike-sharing systems is the optimal location of bike-sharing station. In Yogyakarta, there is already a bike-sharing systems but only in 12 stations. This research aims to identify the best location for siting bike-sharing station based on spatial analysis using Analytical Hierarchy Process (AHP) and Spatial Multi-Criteria Analysis (SMCA). According to the analysis, the urban core of Yogyakarta and its surrounding are the most suitable location for bike-sharing station.
Performance analysis of drip and sprinkler irrigation on pineapple cultivation
Authors: Nadia Umi H , Agung Tricahya R , Muhammad Farid A , Radi  , Murtiningrum  
Published: March 2020

Abstract
Irrigation is one of important process in pineapple planting, it caused pineapple needs one in its cultivation which means it will face two kind of season (dry and rainy season) in Indonesia. So that, irrigation process is a routine which is done by PT. Great Giant Food (GGF), East Lampung to keep their pineapple’s growth in optimum condition. PT. GGF choose two types of irrigation system, there are sprinkler and drip irrigation, but they do not have enough research to know the efficiency of their irrigation systems. Because of that reason, this research is aimed to know the efficiency of irrigation system in pineapple cultivation of PT. GGF. Researchers used random sampling to collect the data, then they counted the value of CU and DU of irrigation system. This research showed that the value of CU and SU are 73,032% and 52,84%, respectively. That number of CU and SU showed that drip irrigation of pineapple cultivation in PT. GGT is good enough, but the drip irrigation is needed to be developed because the number of SU is really high which indicated that the emitter debit of drip irrigation has a low homogeneity.
Behavioral mapping of human activities in The Pananjung Pangandaran strict nature reserve, Indonesia
Authors: Panuntun M D , Marhaento H , Rahardjo N 
Published: March 2020

Abstract
The Pananjung Pangandaran Strict Nature Reserve (PPSNR) is one of the sanctuary reserve area in the southern of Java, Indonesia that has unique of plants, animals, and ecosystem. However, the location of the nature reserve area that adjacent to the nature recreation parks has lead to the disturbance of natural resources due to human interferences. This research aims to assess the distribution of human activities in PPSNR and identify factors affecting those activities. The behavioral mapping method was carried out based on interviews with 209 respondents selected by an accidental sampling technique during two weeks field survey. In addition, a direct mapping method using GPS handheld was carried out to collect coordinates data of human activities and their movements. The results showed that human activities in PPSNR could be grouped into tourism activities and non-tourism activities. It was observed that distance from visitors’ house, type of attraction, and time of activity were the main factors affecting human activities in PPSNR. Finally, the authorities must take measures to control human activities in PPSNR, otherwise their impacts on the natural resources will be worsen.
Agricultural resource potential for improving food security and community welfare in Penimbun Village, Karanggayam, Kebumen, Central Java
Authors: Harini Rika , Ramadhan Cahyadi , Rudi Firman Shantya 
Published: March 2020

Abstract
Indonesia is an agrarian country that has abundant natural resource potential, so that the agricultural sector becomes dominant. Agricultural is a sector has an important role in the national economy but also in regional economic development. Therefore the potential of the existing agricultural resources needs to be developed to improve the community welfare and fulfillment of community food security. The purpose of this study is to determine the potential of agricultural resources, the level of community welfare, food security and strategies in increasing agricultural production to improve the welfare of the people of Penimbun Village. The study was conducted using a baseline survey method to collect primary data through interviews with the local community and stakeholders in Penimbun Village. The data were analyzed with a quantitative descriptive method the results of which were visualized using tables, figures, and maps. The results showed the potential of agricultural resources in Penimbu Village, there were six commodities with the highest amount of production being cassava (449 kg/household) and the highest commodity price was chilli (IDR 25,000/kg). The level of household welfare in Penimbun Village is classified as very poor (32.21%) with rice consumption of 181-240 kg/capita/year. Whereas the level of household resilience of Penimbun Village is categorized as food insecurity (89%). Given the majority of people in Penimbun Village are farmers, the improvement of community welfare and food security can be done by increasing agricultural production (use of superior varieties of seeds, balanced fertilizers, appropriate planting supervision, and post-harvest handling, and intercropping practices).
Economic valuation of the mangrove ecosystem in Purwodadi Sub-district, Purworejo Regency, Central Java
Authors: Setiyaningrum I F , Harini R , Wirasanti N 
Published: March 2020

Abstract
Deforestation of mangroves caused by land conversion into ponds occurs on the southern coast of Purwodadi Sub-district, Purworejo Regency, Central Java. In fact, the mangrove ecosystem has an important role related to global climate change that is happening at this time. Mangroves have the ability to absorb more carbon than other types of forests. Since 2011, there was a mangrove rehabilitation program conducted in three villages in Purwodadi Sub-district, which was initiated by the Purworejo Regency Marine and Fisheries Service. Over time, the conditions of mangroves in each village varied. This study aims to calculate the economic value of mangrove ecosystems in the three villages of Purwodadi Sub-district, namely Gedangan, Jatikontal, and Jatimalang Villages. The method used is TEV (Total Economic Value) which consists of an analysis of direct use value using the market price approach, indirect use value using the replacement cost approach, the option value using the benefits transfer, and the existence value using the WTP method (Willingness to Pay). The results of the study show that the total economic value of mangroves in Gedangan Village is IDR 7,816,788,994.00 in Jatikontal Village in the amount of IDR 10,524,895,152.00, and in Jatimalang Village in the amount of IDR 3,645,653,186.00.
Evaluation of land resource balance using interpretation and object-based classification method (case study : BWP Lumajang,Lumajang district)
Authors: Hariyanto T , Pribadi C B , Kurniawan A , Andriany N , Wijayanti R F 
Published: March 2020

Abstract
Utilization of Natural Resources (SDA) is one of the bases used in implementing development in Indonesia. As the center of government and the economy, the Lumajang BWP has the highest population in Lumajang Regency. The annual growth of the Lumajang BWP population results in significant land changes. Calculation of land resources at BWP Lumajang is needed to determine the amount of land reserves and utilization in the area. This research was carried out to compile Lumajang BWP Land Resource Balance (NSDL) in Lumajang Regency using the on screen digitization (interpretation) method and image segmentation as object-based classification method. The results of this study are at a higher level of accuracy, the digitizing on screen method is 94.521%, for the image segmentation method it is 89.041%. In both methods, the land cover which has the largest decrease in area is irrigated rice fields and the largest increase is plantations.
Shoreline changes analysis of Kendal Coastal Area
Authors: Kurniawan I A , Marfai M A 
Published: March 2020

Abstract
Shoreline changes occur due to abrasion and accretion processes that are triggered due to intensive human activities in coastal areas. The shoreline in the Kendal region is dynamic, and shows mixed results from tidal and dominated by riverine activity. The Shoreline changes have different impacts, all of which may not be visible. Coastal dynamics in the Kendal region cause spatial-temporal shoreline changes. To observe these we need a long and continuous set of data. The purpose of this study is to determine changes in the shoreline in parts of the Kendal coastal district and to calculate the value of the changes. The data used were derived from TM data 1990, to OLI data 2017. To derive the shoreline from the satellite data, a band ratio of Red band to IR band was employed. The shorelines were digitized and saved along with the appropriate MM/DD/YYYY added to the attribute table. The Digital Shoreline Analysis System (DSAS) was used to compute rate-of-change statistics. The Digital Shoreline Analysis System (DSAS) is an extension of ArcGIS, developed by USGS. Using the extension, transects were laid every 100 m. Then, using NET SHORELINE MOVEMENT (NSM), LINEAR REGRESSION RATE (LRR) and END POINT RATE (EPR), the changes every 100 meters were analyzed and stored in a table. Subsequently, using the table, erosion, and accretion, were analyzed, and understood. The farthest accretion process was 1763.29 m and 792.14 m for the abrasion processes.
The potential contribution of the lagoon ecosystem as mangrove carbon sinks in Java
Authors: Pratiwi H F , Haryono E 
Published: March 2020

Abstract
The concentration of CO2 in the atmosphere continues to increase due to the increased release of CO2 in the atmosphere effect of anthropogenic activity. Mangrove ecosystems have an important role in c on tharbon sequestration and reduce the concentration of CO2 emissions in the atmosphere. Mangrovee southern coast of Java partially growth in river mouth lagoon ecosystem, thus it has the potential for more vast mangrove restoration as carbon sink. Therefore, the purpose of this study is to assess the potential mangrove as carbon sink by the lagoon ecosystem on the Java island. One of the locations selected as an assessment sample, that is the Bogowonto Lagoon in Kulonprogo district by set up 12 plots in the planted mangrove. Allometric equation are described for assess the aboveground carbon stored in the stem and calculate the diameter at breast height (DBH) in each plot. Soil sampels were taken in each plot for assess organic carbon soil content were determined using Walkley-Black method, thus the belowground carbon sink was calculated. There was total potential mangrove carbon sink in Java which is 11,758,729.65 tons of CO2 and it can reduce carbon emissions by 4.4% in Java Island.
Total maximum daily load of bod in urbanized Belik River, Yogyakarta
Authors: Tofani A S , Hadi M P 
Published: March 2020

Abstract
The Upper Belik watershed is a river that flows in Special Region of Yogyakarta. Land use in this watershed is dominated by settlements. The development activities by the human can cause river pollution if there are no maintenance and monitoring retated to their waste. The study aims to determine the waste load and capacity of the BOD. The descriptive quantitative with spatial analysis is used. The determination of the sample is by dividing the study area into five segments based on variations in pollutant sources and drainage flow directions. Water sampling and river morphological measurements were carried out purposively, water quality taken by grab sampling. Data are processed using the Water Quality Analysis Simulation Program (WASP). The results showed that Belik River could not accommodate waste loads. Segment one has to reduce 22,41 kg/day BOD, while the second segment does not need to reduce the load. Segment three must reduce as much as 5,73 kg/day, segment four by 35,81 kg/day and segment five by 61,16 kg/day. Reducing the waste load can be done by reducing the pollution load that flowing to the river.
Spatial and temporal patterns of suspended sediment concentrations in the Rhine River
Authors: Sutari C A T , Van der Perk M , Middelkoop H 
Published: March 2020

Abstract
Suspended sediment is a natural and crucial component and plays a crucial role in the hydrological, ecological and geomorphological functioning of the river system. The main objective of this study was to understand the spatial and temporal variation of SSC in Rhine River. This study used daily data of suspended sediment concentration from 1952 to 2016 from SSC model Sutari et al. (submitted manuscript, 2019) and daily data of water discharge collected from International Commission for the Protection of the Rhine (IKSR) and Dutch Rijkswaterstaat from 1995 to 2016 to understand the change of SSC. Analyses of product images suggest that the change of SSC shows a marked increase of about 6 mg/L at Upper Rhine (km 0 to km 435), a gradual increase of about 3 mg/L at Middle Rhine (km 435 to km 735), and is relatively constant at Lower Rhine (km 735 to km 865). Turning to seasonal variation, high SSC is mostly found in winter while low SSC is mostly found in summer. However, another result shows that the SSC tend to be high in June at almost all monitoring stations where the discharge is minimum. Meanwhile, under high discharge condition, the Mosel River gives the most significant contribution of SSC to the Rhine compared to other tributaries due to having a high discharge.