bluuebunny/crossref_metadata_2025_split huggingface dataset:
Treeline ecotones shape the distribution of avian species richness and functional diversity in south temperate mountains
Authors: Altamirano Tomás A. , de Zwaan Devin R. , Ibarra José Tomás , Wilson Scott , Martin Kathy 
Published: October 2020

AbstractMountains produce distinct environmental gradients that may constrain or facilitate both the presence of avian species and/or specific combinations of functional traits. We addressed species richness and functional diversity to understand the relative importance of habitat structure and elevation in shaping avian diversity patterns in the south temperate Andes, Chile. During 2010–2018, we conducted 2202 point-counts in four mountain habitats (successional montane forest, old-growth montane forest, subalpine, and alpine) from 211 to 1,768 m in elevation and assembled trait data associated with resource use for each species to estimate species richness and functional diversity and turnover. We detected 74 species. Alpine specialists included 16 species (22%) occurring only above treeline with a mean elevational range of 298 m, while bird communities below treeline (78%) occupied a mean elevational range of 1,081 m. Treeline was an inflection line, above which species composition changed by 91% and there was a greater turnover in functional traits (2–3 times greater than communities below treeline). Alpine birds were almost exclusively migratory, inhabiting a restricted elevational range, and breeding in rock cavities. We conclude that elevation and habitat heterogeneity structure avian trait distributions and community composition, with a diverse ecotonal sub-alpine and a distinct alpine community.
Fluorescent enzyme-coupled activity assay for phenylalanine ammonia-lyases
Authors: Moisă Mădălina E. , Amariei Diana A. , Nagy Emma Z. A. , Szarvas Nóra , Toșa Monica I. , Paizs Csaba , Bencze László C. 
Published: October 2020

AbstractPhenylalanine ammonia-lyases (PALs) catalyse the non-oxidative deamination of l-phenylalanine to trans-cinnamic acid, while in the presence of high ammonia concentration the reverse reaction occurs. PALs have been intensively studied, however, their industrial applications for amino acids synthesis remained limited, mainly due to their decreased operational stability or limited substrate specificity. The application of extensive directed evolution procedures to improve their stability, activity or selectivity, is hindered by the lack of reliable activity assays allowing facile screening of PAL-activity within large-sized mutant libraries. Herein, we describe the development of an enzyme-coupled fluorescent assay applicable for PAL-activity screens at whole cell level, involving decarboxylation of trans-cinnamic acid (the product of the PAL reaction) by ferulic acid decarboxylase (FDC1) and a photochemical reaction of the produced styrene with a diaryltetrazole, that generates a detectable, fluorescent pyrazoline product. The general applicability of the fluorescent assay for PALs of different origin, as well as its versatility for the detection of tyrosine ammonia-lyase (TAL) activity have been also demonstrated. Accordingly, the developed procedure provides a facile tool for the efficient activity screens of large mutant libraries of PALs in presence of non-natural substrates of interest, being essential for the substrate-specificity modifications/tailoring of PALs through directed evolution-based protein engineering.
Co-haplotyping symbiont and host to unravel invasion pathways of the exotic pest Halyomorpha halys in Italy
Authors: Martinez-Sañudo Isabel , Perotti M. Alejandra , Scaccini Davide , Pozzebon Alberto , Marri Laura , Mazzon Luca 
Published: October 2020

AbstractThe brown marmorated stink bug Halyomorpha halys (Stål) is a globally invasive species that harbours the primary bacterial symbiont ‘Candidatus Pantoea carbekii’. In this work, P. carbekii was used as another genetic marker to investigate the biodiversity and biogeographical patterns of this important pest, in native and newly invaded areas, especially in Italy. The correlation between the genetic structure of the symbiont and that of its host was studied through the analyses of one bacterial and one host marker, the putative pseudogene ΔybgF and the mitochondrial gene COI, respectively. As a result, five new P. carbekii haplotypes were identified, and an association pattern between host-symbiont haplotypes was observed. Host species showed higher haplotype diversity than symbiont, which can be expected in a long term host-symbiont association. Populations from the north-eastern Italy showed the highest values of genetic diversity for both markers, highlighting that this particular Italian area could be the result of multiple ongoing introductions. Moreover, some of the symbiont-host haplotypes observed were shared only by populations from north-eastern Italy and native areas, especially Japan, suggesting further introductions from this native country to Italy. Overall, our findings improve the understanding of the potential origin of multiple accidental introductions of H. halys in Italy.
Early lineage segregation of the retinal basal glia in the Drosophila eye disc
Authors: Tsao Chia-Kang , Huang Yu Fen , Sun Y. Henry 
Published: October 2020

AbstractThe retinal basal glia (RBG) is a group of glia that migrates from the optic stalk into the third instar larval eye disc while the photoreceptor cells (PR) are differentiating. The RBGs are grouped into three major classes based on molecular and morphological characteristics: surface glia (SG), wrapping glia (WG) and carpet glia (CG). The SGs migrate and divide. The WGs are postmitotic and wraps PR axons. The CGs have giant nucleus and extensive membrane extension that each covers half of the eye disc. In this study, we used lineage tracing methods to determine the lineage relationships among these glia subtypes and the temporal profile of the lineage decisions for RBG development. We found that the CG lineage segregated from the other RBG very early in the embryonic stage. It has been proposed that the SGs migrate under the CG membrane, which prevented SGs from contacting with the PR axons lying above the CG membrane. Upon passing the front of the CG membrane, which is slightly behind the morphogenetic furrow that marks the front of PR differentiation, the migrating SG contact the nascent PR axon, which in turn release FGF to induce SGs’ differentiation into WG. Interestingly, we found that SGs are equally distributed apical and basal to the CG membrane, so that the apical SGs are not prevented from contacting PR axons by CG membrane. Clonal analysis reveals that the apical and basal RBG are derived from distinct lineages determined before they enter the eye disc. Moreover, the basal SG lack the competence to respond to FGFR signaling, preventing its differentiation into WG. Our findings suggest that this novel glia-to-glia differentiation is both dependent on early lineage decision and on a yet unidentified regulatory mechanism, which can provide spatiotemporal coordination of WG differentiation with the progressive differentiation of photoreceptor neurons.
Study of domain configurations in (Bi,Na)ZrO3-modified (K,Na)(Nb,Sb)O3 piezoelectric ceramics by acid-etching at different temperatures
Authors: Zhang Jialiang , Zhou Chunming 
Published: October 2020

AbstractDomain structure often greatly affects piezoelectric performance of a ferroelectric ceramic. Accordingly, a convenient method that can well characterize the domain structure at various temperatures is highly desired for understanding the underlying mechanism. An improved acid-etching technique was recently developed for such purpose. Domain structure of poled 0.96(K0.48Na0.52)(Nb0.96Sb0.04)O3–0.04(Bi0.50Na0.50)ZrO3 ceramics with a large piezoelectric coefficient d33 of 535 pC/N was systematically investigated at three typical temperatures. It was found that domain configurations change significantly with temperature. Hierarchical nanodomain structure is widely observed in domain patterns acid-etched at 25 °C, due to the orthorhombic-tetragonal phase coexistence. By contrast, the majority part of those acid-etched at − 60 °C are simply some long parallel stripes, while a small amount of banded structure appears in broad stripes inside some grains. A nearly 63° intersectional angle is seen between two adjacent sets of parallel stripes in the domain pattern of a cuboid-shaped grain, indicating that orthorhombic phase remains down to − 60 °C. The domain patterns acid-etched at 80 °C become even simpler, mainly consisting of long parallel stripes that are several hundred nanometers wide and have quite straight edges. Fundamental issues associating with the possible domain configurations and the acid-etching were discussed on the simple mathematical basis.
Assignment of protonated R-homocitrate in extracted FeMo-cofactor of nitrogenase via vibrational circular dichroism spectroscopy
Authors: Deng Lan , Wang Hongxin , Dapper Christie H. , Newton William E. , Shilov Sergey , Wang Shunlin , Cramer Stephen P. , Zhou Zhao-Hui 
Published: October 2020

AbstractProtonation of FeMo-cofactor (FeMo-co) is important for the process of substrate hydrogenation. Its structure has been clarified as Δ-Mo*Fe7S9C(R-homocit*)(cys)(Hhis) after the efforts of nearly 30 years, but it remains controversial whether FeMo-co is protonated or deprotonated with chelated ≡C − O(H) homocitrate. We have used protonated molybdenum(V) lactate 1 and its enantiomer as model compounds for R-homocitrate in FeMo-co of nitrogenase. Vibrational circular dichroism (VCD) spectrum of 1 at 1051 cm−1 is attributed to ≡C − OH vibration, and molybdenum(VI) R-lactate at 1086 cm−1 is assigned as ≡C − Oα-alkoxy vibration. These vibrations set up labels for the protonation state of coordinated α-hydroxycarboxylates. The characteristic VCD band of NMF-extracted FeMo-co is assigned to ν(C − OH), which is based on the comparison of molybdenum(VI) R-homocitrate. Density functional theory calculations are consistent with these assignments. To the best of our knowledge, this is the first time that protonated R-homocitrate in FeMo-co is confirmed by VCD spectra.
Direct N-substituted N-thiocarboxyanhydride polymerization towards polypeptoids bearing unprotected carboxyl groups
Authors: Zheng Botuo , Bai Tianwen , Ling Jun , Sun Jihong 
Published: October 2020

AbstractSynthesis of poly(α-amino acid)s bearing carboxyl groups is a critical pathway to prepare biomaterials to simulate functional proteins. The traditional approaches call for carboxyl-protected monomers to prevent degradation of monomers or wrong linkage. In this contribution, we synthesize N-carboxypentyl glycine N-thiocarboxyanhydride (CPG-NTA) and iminodiacetic acid N-thiocarboxyanhydride (IDA-NTA) without protection. Initiated by amines, CPG-NTA directly polymerizes into polyCPG bearing unprotected carboxyl groups with controlled molecular weight (2.8–9.3 kg mol−1) and low dispersities (1.08–1.12). Block and random copolymerizations of CPG-NTA with N-ethyl glycine N-thiocarboxyanhydride (NEG-NTA) demonstrate its versatile construction of complicated polypeptoids. On the contrary, IDA-NTA transforms amines into cyclic IDA dimer-capped species with carboxyl end group in decent yields (>89%) regio-selectively. Density functional theory calculation elucidates that IDA repeating unit is prone to cyclize to be the six-membered ring product with low ΔG. The polymer is a good adhesive reagent to various materials with adhesive strength of 33–229 kPa.
Exploration and validation of a novel prognostic signature based on comprehensive bioinformatics analysis in hepatocellular carcinoma
Authors: Wang Xiaofei , Qiao Jie , Wang Rongqi 
Published: October 2020

Abstract
The present study aimed to construct a novel signature for indicating the prognostic outcomes of hepatocellular carcinoma (HCC). Gene expression profiles were downloaded from Gene Expression Omnibus (GEO), The Cancer Genome Atlas (TCGA) and the International Cancer Genome Consortium (ICGC) databases. The prognosis-related genes with differential expression were identified with weighted gene co-expression network analysis (WGCNA), univariate analysis, the least absolute shrinkage and selection operator (LASSO). With the stepwise regression analysis, a risk score was constructed based on the expression levels of five genes: Risk score = (−0.7736* CCNB2) + (1.0083* DYNC1LI1) + (−0.6755* KIF11) + (0.9588* SPC25) + (1.5237* KIF18A), which can be applied as a signature for predicting the prognosis of HCC patients. The prediction capacity of the risk score for overall survival was validated with both TCGA and ICGC cohorts. The 1-, 3- and 5-year ROC curves were plotted, in which the AUC was 0.842, 0.726 and 0.699 in TCGA cohort and 0.734, 0.691 and 0.700 in ICGC cohort, respectively. Moreover, the expression levels of the five genes were determined in clinical tumor and normal specimens with immunohistochemistry. The novel signature has exhibited good prediction efficacy for the overall survival of HCC patients.
Nickel-Catalyzed Decarbonylative Alkynylation of Acyl Fluorides with Terminal Alkynes under Copper-Free Conditions
Authors: Nishihara Yasushi , Chen Qiang , Fu Liyan , You Jingwen 
Published: October 2020

AbstractNickel-catalyzed decarbonylative alkynylation of acyl fluorides with terminal silylethynes under copper-free conditions is described. This newly developed method has a wide substrate scope, affording internal silylethynes in moderate to high yields. The formation of 1,3-diynes as homocoupled products and conjugate enones as carbonyl-retentive products were effectively suppressed.
Reaction of Lithiated Propargyl Ethers with Carbonyl Compounds – A Regioselective Route to Furan Derivatives
Authors: Reissig Hans-Ulrich , Linder Igor , Klemme Robby 
Published: October 2020

AbstractThe deprotonation of 3-aryl-substituted alkyl propargyl ethers with n-butyllithium provides an ambident anion that reacts with carbonyl compounds to provide mixtures of γ-substituted products with alkoxyallene substructure and of α-substituted propargyl ethers. The ratio of the two product types strongly depends on the solvent: in diethyl ether the γ-substituted products predominate whereas the more polar tetrahydrofuran favors the α-adducts. The primary addition products undergo 5-endo-trig or 5-endo-dig cyclizations under various reaction conditions to afford isomeric furan derivatives. The highest selectivity in favor of α-substituted products was achieved by employing a MOM-protected propargyl ether. During the protonation step no evidence for a proton shift leading to an isomeric allenyl anion was found. A brief mechanistic discussion tries to rationalize the observed regio­selectivities.
Long-Term Postoperative Total Knee Arthroplasty Flexion Scores in Relation to Body Mass Index
Authors: Siegel Matthew A. , Patetta Michael J. , Fuentes Angie M. , Haleem Armaan S. , Forsthoefel Craig W. , Sood Anshum , Gonzalez Mark H. 
Published: October 2020

AbstractKnee range of motion (ROM) is an important postoperative measure of total knee arthroplasty (TKA). There is conflicting literature whether patients who are obese have worse absolute ROM outcomes than patients who are not obese. This study analyzed whether preoperative body mass index (BMI) influences knee ROM after patients' primary TKA. A retrospective investigation was performed on patients, who underwent primary TKA at an academic institution, by one of three fellowship-trained adult reconstruction surgeons. Patients were stratified according to their preoperative BMI into nonobese (BMI < 30.0 kg/m2) and obese (BMI ≥ 30.0 kg/m2) classifications. Passive ROM was assessed preoperatively as well as postoperatively at patients' most recent follow-up visit that was greater than 2 years. Mann–Whitney U tests were performed to determine statistical significance at p-value <0.05 for ROM outcomes. No statistically significant differences were observed when ROM in the nonobese group was compared with ROM in the obese group both preoperatively (105.73 ± 11.58 vs. 104.14 ± 13.58 degrees, p-value = 0.417) and postoperatively (105.83 ± 14.19 vs. 104.49 ± 13.52 degrees, p-value = 0.777). Mean follow-up time for all patients was 4.49 ± 1.92 years. In conclusion, long-term postoperative ROM outcomes were similar between patients who were nonobese and patients who were obese.
Effective potential of scalar–tensor gravity
Authors: Arbuzov Andrej , Latosh Boris 
Published: October 2020

Abstract
Effective potential of a scalar field induced by weak gravity is studied. The set of operators providing the leading contribution and preserving the second order of field equations is found. It is shown that only a mass term and a specific Brans–Dicke-like interaction are relevant within such a setup. An explicit form of the potential is found. The model has room for a natural inflationary scenario similar to the well-known case of the Starobinsky inflation. Possible implications for the standard model are highlighted.
Structure, reactions, and electronic spectra of the rare gas cyanohydrides and isocyanohydrides, HRgCN and HRgNC (Rg = Xe or Rn)
Authors: van Hoeve Miriam D , Klobukowski Mariusz 
Published: October 2020

Abstract
The low-energy electronic excitations of HRgCN and HRgNC (Rg = Xe, Rn) were computed at the TDDFT level of theory, both in the gas phase and in xenon cluster. It was found that the most prominent peak in the spectra was due to the highest occupied molecular orbital (HOMO) to lowest unoccupied molecular orbital (LUMO) transition (∼6 eV for HRgCN and ∼4.5 eV for HRgNC). Cluster confinement brought about bathochromic shifts in the spectra and better agreement with experiment for HXeCN. The effects of spin–orbit coupling (SOC) in the heavier Rn systems were investigated: for HRnCN, SOC red-shifted the HOMO–LUMO peak, while it blue-shifted the HOMO–LUMO peak for HRnNC. Geometry optimizations were carried out for the HRgCN and HRgNC systems to locate minima and transition states for dissociation and isomerization. Effects of isotopic substitution on reaction rates were predicted. A new model core potentials basis set was introduced and effectiveness of several pseudopotential basis sets was studied.
Effect of substrate symmetry on the orientations of MoS2 monolayers
Authors: Pan Shuangyuan , Yang Pengfei , Zhu Lijie , Hong Min , Xie Chunyu , Zhou Fan , Shi Yuping , Huan Yahuan , Cui Fangfang , Zhang Yanfeng 
Published: October 2020

Abstract
Two-dimensional (2D) semiconducting transition metal dichalcogenides (TMDs) are promising platforms for developing next-generation electronic and optoelectronic devices due to their unique properties. To achieve this, the growth of large single-crystal TMDs is a critical issue. Unraveling the factors affecting the nucleation and domain orientation should hold fundamental significance. Herein, we design the chemical vapor deposition growth of monolayer MoS2 triangles on Au(111) and Au(100) facets, for exploring the substrate facet effects on the domain orientations. According to multi-scale characterizations, we find that, the obtained triangular MoS2 domains present two preferential orientations on the six-fold symmetric Au(111) facet, whereas four predominant orientations on the four-fold symmetric Au(100) facet. Using on-site scanning tunneling microscopy, we further reveal the preferred alignments of monolayer MoS2 triangles along the close-packed directions of both Au(111) and Au(100) facets. Moreover, bunched substrate steps are also found to form along the close-packed directions of the crystal facets, which guides the preferential nucleation of monolayer MoS2 along the step edges. This work should hereby deepen the understanding of the substrate facet/step effect on the nucleation and orientation of monolayer MoS2 domains, thus providing fundamental insights into the controllable syntheses of large single-crystal TMD monolayers.
Unveiling the interplay between induced native defects and room temperature magnetic ordering in titanium deficient disordered-TiO2 nanoparticles
Authors: Dhakshinamoorthy Jayaseelan , Srivastava Sachin Kumar , Mishra Durgamadhab , Pullithadathil Biji 
Published: October 2020

Abstract
Understanding the origin of magnetic ordering in an undoped semiconductor with native defects is an open question, which is being explored actively in research. In this investigation, the interplay between magnetic ordering and excess induced native defects in undoped anatase TiO2 nanoparticles is explained using an experimental and theoretical approach. It is demonstrated that structurally disordered TiO2 nanoparticles with a high concentration of native defects such as titanium interstitials and oxygen vacancies are synthesized using controlled atmospheric rapid cooling (i.e. quenching) process. The structural disorders in the lattice have been examined using various spectroscopic and microscopic analyses revealed the existence of Ti deficiency in both pristine and quenched TiO2 nanoparticles. A possible origin of magnetic ordering in titanium deficient anatase TiO2 system is elucidated based on first-principle calculations. It was found that the overall magnetic moment of Ti deficient TiO2 system is determined by the distance between Ti interstitials and its neighboring vacancies (i.e. either V
Ti or V
Os). However, quenched TiO2 nanoparticles possess excess Ti interstitials, Ti and O vacancies and therefore the net magnetic moment of the system is reduced due to anti-ferromagnetically coupled neighboring Tilattice ions.
Self-powered, ultra-high detectivity and high-speed near-infrared photodetectors from stacked–layered MoSe2/Si heterojunction
Authors: Xu Yan , Ma Yuanming , Yu Yongqiang , Chen Shirong , Chang Yajing , Chen Xing , Xu Gaobin 
Published: October 2020

Abstract
Photodetectors based on high-performance, two-dimensional (2D) layered transition metal dichalcogenides (TMDCs) are limited by the synthesis of larger-area 2D TMDCs with high quality and optimized device structure. Herein, we report, for the first time, a uniform and stacked–layered MoSe2 film of high quality was deposited onto Si substrate by using the pulsed laser deposition technique, and then in situ constructed layered MoSe2/Si 2D–3D vertical heterojunction. The resultant heterojunction showed a wide near-infrared response up to 1550 nm, with both ultra-high detectivity up to 1.4 × 1014 Jones and a response speed approaching 120 ns at zero bias, which are much better than most previous 2D TMDC-based photodetectors and are comparable to that of commercial Si photodiodes. The high performance of the layered MoSe2/Si heterojunction can be attributed to be the high-quality stacked–layered MoSe2 film, the excellent rectifying behavior of the device and the n-n heterojunction structure. Moreover, the defect-enhanced near-infrared response was determined to be Se vacancies from the density functional theory (DFT) simulations. These results suggest great potential of the layered MoSe2/Si 2D–3D heterojunctions in the field of communication light detection. More importantly, the in situ grown heterojunctions are expected to boost the development of other 2D TMDCs heterojunction-based optoelectronic devices.