bluuebunny/crossref_metadata_2025_split huggingface dataset:
Excited quarks production at FCC and SppC pp colliders
Authors: Sahin Mehmet , Aydin Güral , Günaydin Yusuf Oguzhan 
Published: October 2019

Potential discovery, observation and exclusion limits of excited [Formula: see text] and [Formula: see text] quarks with gamma[Formula: see text]jet final state are researched at the multi-TeV scale colliders, FCC and S[Formula: see text]C in this paper. Both colliders, FCC and S[Formula: see text]C, show that excited [Formula: see text] and [Formula: see text] quarks could be discovered up to 42.1 TeV and 55.2 TeV for [Formula: see text], 30.3 TeV and 39.4 TeV for [Formula: see text] and 42.3 TeV and 55.5 TeV mass values for degenerate case [Formula: see text], respectively. The determination of the excited quarks compositeness scale is examined, which will be up to multi-PeV level. Besides these analyses, free parameters ([Formula: see text], [Formula: see text] and [Formula: see text]) are scanned from around 0.1 up to 1 that show excited quark could be discovered at dozens of TeV with even coupling constants under 0.1.
Automated mineralogical profiling of soils as an indicator of local bedrock lithology: a tool for predictive forensic geolocation
Authors: Pirrie Duncan , Crean Daniel E. , Pidduck Allan J. , Nicholls Timothy M. , Awbery Roy P. , Shail Robin K. 
Published: October 2019

Abstract

The use of soil evidence to identify an unknown location is a powerful tool to determine the provenance of an item in an investigation. We are particularly interested in the use of these indicators in nuclear forensic cases, whereby identification of locations associated with, for example, a smuggled nuclear material, may be used to indicate the provenance of a find. The use of soil evidence to identify an unknown location relies on understanding and predicting how soils vary in composition depending on their geological/geographical setting. In this study, compositional links between the mineralogy of 40 soils and the underlying bedrock geology, as documented in local-scale geological maps, were established. The soil samples were collected from locations with broadly similar climate and land use across a range of geological settings in a ‘test bed’ 3500 km
2
area of SW England. In this region, the soils formed through chemical weathering of the bedrock, representing a worst case scenario for this type of forensic geolocation owing to the high degree of alteration of the parent rock during soil formation. The mineralogy was quantified using automated scanning electron microscopy–energy dispersive X-ray spectrometry analysis based on QEMSCAN technology. Soil mineralogy and texture as measured using this technique are consistent with the underlying geology as indicated by regional-scale geological mapping. Furthermore, differences between individual units of the same bedrock lithology, such as different granites, were identified by examining trace mineralogical signatures. From an investigative viewpoint, this demonstrated that rapid automated mineral profiling of soil samples could be used, in conjunction with readily available geological mapping or similar datasets, to provide indication of the areas from which a soil sample of unknown origin could, or could not, have been sourced.
N. Bernstein’s Commentary on Punica 2 and J. Littlewood’s Commentary on Punica 10
Authors: Roumpou Angeliki Nektaria 
Published: October 2019

Abstract
This article reviews two new commentaries on Silius Italicus’ Punica published in 2017 by Oxford University Press: by Neil Bernstein on book 2 and by Joy Littlewood on book 10. Both volumes offer an introduction, translation and commentary as well as an analysis of important thematic points. This review considers each book’s main strengths, discusses their limitations, and demonstrates their immense contribution to Flavian scholarship. Moreover, it examines the place of these two particular books in current Silian studies, considering how they inscribe themselves into current trends.
Crustacean vitellogenin: a systematic and experimental analysis of their genes, genomes, mRNAs and proteins; and perspective to Next Generation Sequencing
Authors: Jimenez-Gutierrez Stephanie , Cadena-Caballero Cristian E. , Barrios-Hernandez Carlos , Perez-Gonzalez Raul , Martinez-Perez Francisco , Jimenez-Gutierrez Laura R. 
Published: October 2019

Abstract
Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture.
First record of Branchinectella media (Schmankewitsch, 1873) (Branchiopoda, Anostraca) in Romania
Authors: Sainz-Escudero Lucía , Stănescu Florina , Rodríguez-Flores Paula C. , García-París Mario 
Published: October 2019

Abstract
Romania is one of the most diverse countries for Anostraca in Europe. The Romanian Plain and the Black Sea coast are recognized as the most species-rich areas and harbour a high concentration of saline lakes and ponds. A short survey of ponds and small lakes was carried out in these areas of Romania during March 2019, with the aim of improving the knowledge of Anostraca diversity and distribution. Two species of Anostraca were found: Chirocephalus diaphanus romanicus Stoicescu, 1992, in Argeş County, and Branchinectella media (Schmankewitsch, 1873), in Constanţa County. The record of B. media is the first for Romania, increasing the known diversity of Anostraca to 17 species. This discovery highlights the high diversity of large Branchiopoda in the country.
The “Warlord Officers”: A Collective Biography of the Anguojun Officers during the Republican Period and Beyond
Authors: Kwong Chi Man 
Published: October 2019

Abstract
This article argues that there existed a group of modern professional officers in the warlord armies during the Republican period (1912-1949); they were caught in the middle of a political situation that distorted their career development, disrupted their intellectual growth, and undermined their group cohesion. Using the prosopographical approach and drawing on theories of military culture and professionalism, this article looks at the lives and careers of the middle and high-ranking officers of the National Pacification Army (Anguojun), as they formed the backbone of the warlord armies that controlled a substantial part of China before the Northern Expedition (1926-1928) and that played an important role in the wars in China from the 1910s to 1949. Some of these officers, despite their background, rose to high rank in the Nationalist and Communist armies; the less fortunate ones, however, were purged after 1949 by the new Communist government. It elaborates how political strife affected the lives of the professionally trained officers in China, discusses the development of modern military education in China, and sheds lights on the self-understanding of these officers, their relationship to the state and society, and the sources of their cohesion as a group.
Old Catholic Theology: An Introduction
Authors: Smit Peter-Ben 
Published: October 2019

Abstract
Old Catholic theology is the theology that is characteristic of the Old Catholic Churches of the Union of Utrecht. Old Catholic Theology: An Introduction, authored by Peter-Ben Smit, an acknowledged expert in the field, outlines the main characteristics of and influences on Old Catholic theology, as well as the extant ecumenical relationships of the Old Catholic Churches. In doing so, it covers what may be called ‘mainstream’ Old Catholic theology, while paying attention to extant diversity within the Old Catholic tradition. Particular attention is given to the hermeneutical approach to theology, ecclesiology, sacramental theology and ecumenical theology. Old Catholic theology has come to be characterized by a sacramental understanding of the church. This is the result of ecumenical dialogue and the basis upon which the Old Catholic Churches engage in ecumenical rapprochement. Hermeneutics of Scripture and tradition plays an important role as well, given that Old Catholic Churches have developed their own form of a hermeneutics of communion.
Kilometer-Scale Climate Models: Prospects and Challenges
Authors: Schär Christoph , Fuhrer Oliver , Arteaga Andrea , Ban Nikolina , Charpilloz Christophe , Di Girolamo Salvatore , Hentgen Laureline , Hoefler Torsten , Lapillonne Xavier , Leutwyler David , Osterried Katherine , Panosetti Davide , Rüdisühli Stefan , Schlemmer Linda , Schulthess Thomas C. , Sprenger Michael , Ubbiali Stefano , Wernli Heini 
Published: October 2019

AbstractCurrently major efforts are underway toward refining the horizontal resolution (or grid spacing) of climate models to about 1 km, using both global and regional climate models (GCMs and RCMs). Several groups have succeeded in conducting kilometer-scale multiweek GCM simulations and decadelong continental-scale RCM simulations. There is the well-founded hope that this increase in resolution represents a quantum jump in climate modeling, as it enables replacing the parameterization of moist convection by an explicit treatment. It is expected that this will improve the simulation of the water cycle and extreme events and reduce uncertainties in climate change projections. While kilometer-scale resolution is commonly employed in limited-area numerical weather prediction, enabling it on global scales for extended climate simulations requires a concerted effort. In this paper, we exploit an RCM that runs entirely on graphics processing units (GPUs) and show examples that highlight the prospects of this approach. A particular challenge addressed in this paper relates to the growth in output volumes. It is argued that the data avalanche of high-resolution simulations will make it impractical or impossible to store the data. Rather, repeating the simulation and conducting online analysis will become more efficient. A prototype of this methodology is presented. It makes use of a bit-reproducible model version that ensures reproducible simulations across hardware architectures, in conjunction with a data virtualization layer as a common interface for output analyses. An assessment of the potential of these novel approaches will be provided.
Reporting on Climate Change by Broadcast Meteorologists: A National Assessment
Authors: Timm Kristin M. F. , Perkins David , Myers Teresa , Placky Bernadette Woods , Maibach Edward W. 
Published: October 2019

AbstractTelevision weathercasters are uniquely situated to inform their audiences about the local impacts of global climate change and a growing number of them are adopting the role of climate change educator. We surveyed all American broadcast meteorology professionals in 2015 (N= 2,059; response rate = 22.6%), 2016 (N= 2017; response rate = 31.2%), and 2017 (N= 2,177; response rate = 22.1%) to assess weathercasters’ interest in reporting about climate change; if, where, and how they report about climate change; and the reactions they get from their audiences when they do. Many participating weathercasters indicated that they were moderately or very interested in reporting about climate change, especially using local historical climate information (56%). Just over half of the weathercasters (57.9%) had used one or more communication mode to inform their viewers, or other people in their community, about the local impacts of climate change in the prior year. The most commonly used modes were social media (42.7%), school visits (36.3%), community events (33.1%), and on-air broadcasts (31.3%). Most weathercasters who had reported about climate change on air indicated they received either positive viewer feedback or little feedback (61.9%); conversely, weathercasters who had not reported about climate change expected to receive mostly negative feedback (44.2%). In sum, this analysis suggests that large numbers of weathercasters have adopted the role of climate change educator in their communities; they use a range of communication modes to share climate change information with their audiences and receive mostly positive feedback from their audiences when they do.
How Does Hurricane Edouard (2014) Evolve toward Symmetry before Rapid Intensification? A High-Resolution Ensemble Study
Authors: Alvey George R. , Zipser Ed , Zawislak Jonathan 
Published: October 2019

Abstract
A 14-member high-resolution ensemble of Edouard (2014), a moderately sheared tropical storm that underwent rapid intensification (RI), is used to determine causes of vortex alignment and precipitation symmetry prior to RI. Half the members intensify similarly to the NHC’s best track, while the other seven ensemble members fail to reproduce intensification. Analyses of initial conditions (vertical wind shear, sea surface temperatures, relative humidity, vortex structure) reveal that lower humidity and weaker, more tilted vortices in nonintensifying members likely increase their susceptibility to boundary layer flushing episodes. As the simulations progress, vortex tilt, inner-core humidity, and azimuthal variations in the structure of precipitation best differentiate the two ensemble subsets. Although all members initially are slowly intensifying asymmetric storms, the RI members are unique in that they have more persistent deep convection downshear, which favors vortex alignment via the stretching term and/or precession. As deep convection transitions to stratiform precipitation and anvil clouds in the upshear quadrants, evaporation and sublimation of condensate advected from the downshear quadrants moisten the middle to upper troposphere. This is hypothesized to promote an increase in precipitation symmetrization, a necessary precursor for RI.
GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data
Authors: Ahmed Nauman , Lévy Jonathan , Ren Shanshan , Mushtaq Hamid , Bertels Koen , Al-Ars Zaid 
Published: October 2019

Abstract

Background
Due the computational complexity of sequence alignment algorithms, various accelerated solutions have been proposed to speedup this analysis. NVBIO is the only available GPU library that accelerates sequence alignment of high-throughput NGS data, but has limited performance. In this article we present GASAL2, a GPU library for aligning DNA and RNA sequences that outperforms existing CPU and GPU libraries.

Results
The GASAL2 library provides specialized, accelerated kernels for local, global and all types of semi-global alignment. Pairwise sequence alignment can be performed with and without traceback. GASAL2 outperforms the fastest CPU-optimized SIMD implementations such as SeqAn and Parasail, as well as NVIDIA’s own GPU-based library known as NVBIO. GASAL2 is unique in performing sequence packing on GPU, which is up to 750x faster than NVBIO. Overall on Geforce GTX 1080 Ti GPU, GASAL2 is up to 21x faster than Parasail on a dual socket hyper-threaded Intel Xeon system with 28 cores and up to 13x faster than NVBIO with a query length of up to 300 bases and 100 bases, respectively. GASAL2 alignment functions are asynchronous/non-blocking and allow full overlap of CPU and GPU execution. The paper shows how to use GASAL2 to accelerate BWA-MEM, speeding up the local alignment by 20x, which gives an overall application speedup of 1.3x vs. CPU with up to 12 threads.

Conclusions
The library provides high performance APIs for local, global and semi-global alignment that can be easily integrated into various bioinformatics tools.
Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.)
Authors: Tang Mingjia , Xu Liang , Wang Yan , Cheng Wanwan , Luo Xiaobo , Xie Yang , Fan Lianxue , Liu Liwang 
Published: October 2019

Abstract

Background
Abiotic stresses due to climate change pose a great threat to crop production. Heat shock transcription factors (HSFs) are vital regulators that play key roles in protecting plants against various abiotic stresses. Therefore, the identification and characterization of HSFs is imperative to dissect the mechanism responsible for plant stress responses. Although the HSF gene family has been extensively studied in several plant species, its characterization, evolutionary history and expression patterns in the radish (Raphanus sativus L.) remain limited.

Results
In this study, 33 RsHSF genes were obtained from the radish genome, which were classified into three main groups based on HSF protein domain structure. Chromosomal localization analysis revealed that 28 of 33 RsHSF genes were located on nine chromosomes, and 10 duplicated RsHSF genes were grouped into eight gene pairs by whole genome duplication (WGD). Moreover, there were 23 or 9 pairs of orthologous HSFs were identified between radish and Arabidopsis or rice, respectively. Comparative analysis revealed a close relationship among radish, Chinese cabbage and Arabidopsis. RNA-seq data showed that eight RsHSF genes including RsHSF-03, were highly expressed in the leaf, root, cortex, cambium and xylem, indicating that these genes might be involved in plant growth and development. Further, quantitative real-time polymerase chain reaction (RT-qPCR) indicated that the expression patterns of 12 RsHSF genes varied upon exposure to different abiotic stresses including heat, salt, and heavy metals. These results indicated that the RsHSFs may be involved in abiotic stress response.

Conclusions
These results could provide fundamental insights into the characteristics and evolution of the HSF family and facilitate further dissection of the molecular mechanism responsible for radish abiotic stress responses.
SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant
Authors: Chen Mo-Xian , Sun Chao , Zhang Kai-Lu , Song Yu-Chen , Tian Yuan , Chen Xi , Liu Ying-Gao , Ye Neng-Hui , Zhang Jianhua , Qu Shenchun , Zhu Fu-Yuan 
Published: October 2019

AbstractBackgroundApple is one of the most popular fruit crops world-wide and its skin color is an important quality consideration essential for commercial value. However, the strategy on genetic breeding for red skin apple and the genetic basis of skin color differentiation is very limited and still largely unknown.ResultsHere, we reported a bud sport mutant of Fuji apple with red skin color and enhanced anthocyanins accumulation. Quantitative SWATH-MS (sequential window acquisition of all theoretical spectra-mass spectrometry) proteomics investigations revealed proteome changes in the apple red skin bud mutation and a total of 451 differentially expressed proteins were identified in apple skin. The mutant showed significantly increased expression levels of photosynthesis-related proteins, stress-related proteins as well as anthocyanins biosynthesis pathway. On the other hand, substantial downregulation of mitogen-activated protein kinase 4 (MAPK4) and mevalonate kinase (MVK) were detected, indicating a promising role for the red skin color development in the mutant. Furthermore, we also hypothesize that a post-transcriptional regulation of the skin color formation occurs in the mutant through the advanced SWATH-MS analysis.ConclusionOur work provides important information on the application of proteomic methods for analysing proteomes changes in Fuji apple and highlights a clade of regulatory proteins potentially contributing for the molecular breeding of fruit skin color.
The impact of early comprehensive geriatric screening on the readmission rate in an acute geriatric ward: a quasi-experimental study
Authors: Lin Kun-Pei , Chen Jen-Hau , Lu Feng-Ping , Wen Chiung-Jung , Chan Ding-Cheng 
Published: October 2019

Abstract

Background
Unplanned readmission is an important healthcare quality issue. We studied the effect of a comprehensive geriatric screen (CGS) in the early admission course followed by a comprehensive geriatric assessment on readmission rates in elderly patients.

Methods
This quasi-experimental study with a historical comparison group was conducted in the geriatric ward of a referral centre in northern Taiwan. Older adults (aged > = 65 y/o) admitted from June 2013 to December 2013 were recruited for the geriatric screen group (N = 377). Patients admitted to the same ward from July 2011 to June 2012 were selected for the historical group (N = 380). The CGS was administered within the first 48 h after admission and was followed by a comprehensive geriatric assessment (CGA). Confounding risk factors included age, gender, Charlson comorbidity index, Barthel index score and medical utilization (length of stay and number of admissions), which were controlled using logistic regression models. We also developed a scoring system to identify the group that would potentially benefit the most from the early CGS.

Results
The 30-day readmission rate was significantly lower in the early CGS group than in the historical comparison group (11.4% vs 16.9%, p = 0.03). After adjusting for confounding variables, the hazard ratio of the early CGS group was 0.64 (95% CI 0.43–0.95). After scoring the potential benefit to the patients in the early CGS group, the log rank test showed a significant difference (p = 0.001 in the high-potential group and p = 0.98 in the low-potential group).

Conclusion
An early CGS followed by a CGA may significantly reduce the 30-day readmission rate of elderly patients.
The latent tuberculosis infection cascade of care in Iqaluit, Nunavut, 2012–2016
Authors: Pease Christopher , Zwerling Alice , Mallick Ranjeeta , Patterson Mike , Demaio Patricia , Finn Sandy , Allen Jean , Van Dyk Deborah , Alvarez Gonzalo G. 
Published: October 2019

Abstract

Background
A remote arctic region of Canada predominantly populated by Inuit with the country’s highest incidence of tuberculosis.

Methods
The study was undertaken to describe the latent tuberculosis infection (LTBI) cascade of care and identify factors associated with non-initiation and non-completion of LTBI treatment. Data were extracted retrospectively from medical records for all patients with a tuberculin skin test (TST) implanted in Iqaluit, Nunavut between January 2012 and March 2016. Associations between demographic and clinical factors and both treatment non-initiation among and treatment non-completion were identified using log binomial regression models where convergence could be obtained and Poisson models with robust error variance where convergence was not obtained.

Results
Of 2303 patients tested, 439 (19.1%) were diagnosed with LTBI. Treatment was offered to 328 patients, was initiated by 246 (75.0% of those offered) and was completed by 186 (75.6% of initiators). In multivariable analysis, older age (adjust risk ratio [aRR] 1.17 per 5-year increase, 95%CI:1.09–1.26) and undergoing TST due to employment screening (aRR 1.63, 95%CI:1.00–2.65, compared to following tuberculosis exposure) were associated with increased non-initiation of treatment. Older age (aRR 1.13, 95%CI: 1.03–1.17, per 5-year increase) was associated with increased non-completion of treatment.

Conclusions
A similar rate of treatment initiation and higher rate of treatment completion were found compared to previous North American studies. Interventions targeting older individuals and those identified via employment screening may be considered to help to address the largest losses in the cascade of care.