bluuebunny/crossref_metadata_2025_split huggingface dataset:
Physical conditions in the early Solar system and life origin: compatible models
Authors: Ragulskaya Mariya , Khramova Elizaveta , Obridko Vladimir 
Published: January 2020

AbstractThe article discusses the physical conditions in the early Solar system and on Earth, determining the origin, selection and development of the first living systems. The role of the young Sun dynamics, cosmic rays, magnetic fields and other protective shells of the Earth in the formation of the biosphere is emphasized. The selection of a single genetic code, ancient methods of long-term storage of energy and adaptive technologies of the first living systems occurred under the influence of cosmological and geophysical factors. A hypothesis was suggested that the accumulation of energy in polyphosphates without the participation of solar radiation could have ensured the survival of the primary biosphere in the conditions of the low luminosity of the young Sun.
Exploration of the molecular gas content of young debris disks
Authors: Moór A. , Kóspál Á. , Ábrahám P. , Pawellek N. 
Published: January 2020

AbstractThanks especially to the ALMA interferometer, there are several new detections of CO gas in debris disks. Based on our own and archival ALMA observations, we found that the presence of CO gas in dust-rich debris disks around young (10–50 Myr) A-type stars is common. Interestingly, similarly dust-rich debris disks around young F-K type stars exhibit significantly lower gas incidence. The main difference between the two subsamples is related to a special population of gaseous debris disks whose total CO gas quantity is comparable to that of the less massive Herbig Ae disks. The origin of gas in these CO-rich debris systems is not fully clarified yet.
Bio-habitability and life on planets of M-G-type stars
Authors: Wandel Amri 
Published: January 2020

AbstractThe recent detection of Earth-sized planets in the habitable zone of Proxima Centauri, Trappist-1, and many other nearby M-type stars (which consist some 75% of the stars) has led to speculations, whether liquid water and life actually exist on these planets. Defining the bio-habitable zone, where liquid water and complex organic molecules can survive on at least part of the planetary surface, we suggest that planets orbiting M-type stars may have life-supporting conditions for a wide range of atmospheric properties (Wandel2018). We extend this analysis to synchronously orbiting planets of K- and G-type stars and discuss the implications for the evolution and sustaining of life on planets of M- to G-type stars, in analogy to Earth.
“KAGONMA” NH3 mapping observations of molecular clouds with Nobeyama 45m telescope
Authors: Murase T. , Handa T. , Maebata M. , Yang Z. , Hirata Y. , Ishizaki K. , Sunada K. , Nakano M. , Omodaka T. , Shihara S. , Wada K. , Umemoto T. , Matsuo M. , Minamidani T. , Torii K. , Kuno N. , Fujita S. , Kohno M. , Kuriki M. , Nishimura A. , Tsuda Y. 
Published: January 2020

AbstractIn the collapsing phase of a molecular cloud, the molecular gas temperature is a key to understand the evolutionary process from a dense molecular cloud to stars. In order to know this, mapping observations in NH3 lines are required. Therefore, we made them based on the FUGIN (FOREST Unbiased Galactic plane Imaging survey with Nobeyama 45m telescope). The 6 maps were observed in NH3 (J,K) = (1,1), (2,2), (3,3) and H2O maser lines and obtained temperature maps; some show temperature gradient in a cloud. Additionally 72 cores were observed. These candidates were called as KAGONMA or KAG objects as abbreviation of KAgoshima Galactic Object survey with Nobeyama 45-M telescope in Ammonia lines. We show the results of two regions in W33 and discuss their astrophysical properties.
Episodic accretion in focus: revealing the environment of FU Orionis-type stars
Authors: Fehér O. , Kóspál Á. , Ábrahám P. , Hogerheijde M. R. , Brinch Ch. , Semenov D. 
Published: January 2020

AbstractThe earliest phases of star formation are characterised by intense mass accretion from the circumstellar disk to the central star. One group of young stellar objects, the FU Orionis-type stars exhibit accretion rate peaks accompanied by bright eruptions. The occurance of these outbursts might solve the luminosity problem of protostars, play a key role in accumulating the final star mass, and have a significant effect on the parameters of the envelope and the disk. In the framework of the Structured Accretion Disks ERC project, we are conducting a systematic investigation of these sources with millimeter interferometry to examine whether they represent normal young stars in exceptional times or they are unusual objects. Our results show that FU Orionis-type stars can be similar to both Class I and Class II systems and may be in a special evolutionary phase between the two classes with their infall-driven episodic eruptions being the main driving force of the transition.
Searching for chemical signatures of planet formation
Authors: Rab Ch. , Muro-Arena G.A. , Kamp I. , Dominik C. , Waters L.B.F.M. , Thi W-F. , Woitke P. 
Published: January 2020

AbstractHigh spatial resolution observations with ALMA and VLT/SPHERE show gaps and rings in continuum emission of protoplanetary disks, possibly indicating ongoing planet formation. However, it is still unclear if the gas follows the dust distribution. We present radiation thermo-chemical models for the disk of HD 163296 to study the impact of dust and gas gaps on the chemistry and molecular line emission. We compare a model with only dust gaps to a model that also has gas gaps. In both models, rings and gaps are visible in (sub)mm molecular line emission. Due to chemistry, certain molecules are sensitive to dust gaps where others are more sensitive to gas depletion. Observations of multiple molecules might allow to accurately determine the degree of gas depletion within the dust gaps, information crucial to discriminate between gap formation theories (e.g. planets, ice lines).
Infrared Spectroscopic Studies of Gases in the Circumstellar Environments of Young Stellar Objects
Authors: Sargent Benjamin A. , Forrest William J. , Green Joel D. , Montiel Edward J. , DeWitt Curtis , Richter Matthew J. 
Published: January 2020

AbstractThe building blocks of planets in planet-forming (“protoplanetary”) disks are assembled early in the lifetime of a young star. The gas disks are relatively short-lived, with a half-life of about 3 million years, as chemical reactions modify the reservoir of material from the natal molecular cloud. Spitzer Space Telescope Infrared Spectrograph (IRS) spectra of protoplanetary disks around T Tauri stars show emission from H2O and absorption from other gases, sometimes consistent with formaldehyde, H2CO , and other times consistent with formic acid, HCOOH, in the 5-7.5 μm region. SOFIA-EXES spectra of YSOs that follow up on these Spitzer-IRS studies are presented. How the gaseous features observed between 5-7.5 μm relate to those at other wavelengths is discussed. This work suggests that water and organic molecules, which are crucial for life as we know it, are present in the habitable zones of stars at a very early age [of 1-3 million years].
The TOP-SCOPE survey of Planck Galactic Cold Clumps: The 200 brightest compact sources of Planck
Authors: Bögner R. , Liu T. , Eden D. J. , Tóth L. V. 
Published: January 2020

AbstractThe Planck all-sky submillimetre observations have made it possible to study Galactic cold clumps in diverse environments, to probe dust properties and to examine the earliest stages of star formation. The TOP-SCOPE joint survey program aims to statistically study the evolution of molecular clouds and the initial conditions of star formation in a wide variety of environments. In this work we carry out an investigation of the 200 brightest compact sources detected by Planck.
Konkoly optical catalog of young stars for the Gaia Photometric Science Alerts
Authors: Varga-Verebélyi E. , Kun M. , Szegedi-Elek E. , Ábrahám P. , Varga J. , Kiss Cs. , Kóspál Á. , Marton G. , Szabados L. 
Published: January 2020

AbstractOur aim is to present a new and so far most complete catalog of optically selected young stars. The basis of this work is an extensive literature search for young stars in all the known nearby (< 2 kpc) star forming regions, included in the Handbook of Star Forming Regions [4, 5], and in 67 additional catalogs. We collected data on known young, pre-main-sequence stars detected in optical bands. The catalog contains the celestial coordinates, object names, names of the enclosing star forming region, identification methods, distances, and other information (e.g., references, binarity) for 15208 young stellar objects. It is already in use by the Gaia Photometric Science Alerts Team to identify variable young stars in the Gaia data. Our catalog was cross-correlated with the Gaia DR2 and we obtained flux and distance estimations for 86% of the stars.
Triggered Star Formation inside the Shell of a Wolf-Rayet Bubble as the Origin of the Solar System
Authors: Dwarkadas Vikram V. , Dauphas Nicolas , Meyer Bradley , Boyajian Peter , Bojazi Michael 
Published: January 2020

AbstractA constraint on Solar System formation is the high 26Al/27Al abundance ratio, 17 times higher than the average Galactic ratio, while the 60Fe/56Fe value was lower than the Galactic value. This challenges the assumption that a nearby supernova was responsible for the injection of these short-lived radionuclides into the early Solar System. We suggest that the Solar System was formed by triggered star formation at the edge of a Wolf-Rayet (W-R) bubble. We discuss the details of various processes within the model using numerical simulations, and analytic and semi-analytic calculations, and conclude that it is a viable model that can explain the initial abundances of 26Al and 60Fe. We estimate that 1%-16% of all Sun-like stars could have formed in such a setting.
Modelling the atmosphere of potential habitable planets
Authors: Iro Nicolas 
Published: January 2020

AbstractThe list of planets discovered in the habitable zone of its star is continuously growing. We present a simple one-dimension radiative transfer model in order to better infer on the habitability of such systems. Particular focus is on the TRAPPIST-1 planets (Gillon et al.2017), particularly on planets b, c, d, e and f.
Stellar activity and winds shaping the atmospheres of Earth-like planets
Authors: Lueftinger Theresa , Güdel Manuel , Saikia Sudeshna Boro , Johnstone Colin , Kulterer Beatrice , Kochukhov Oleg , Kislyakova Kristina 
Published: January 2020

AbstractPlanets orbiting young, active stars are embedded in an environment that is far from being as calm as the present solar neighbourhood. They experience the extreme environments of their host stars, which cannot have been without consequences for young stellar systems and the evolution of Earth-like planets to habitable worlds. Stellar magnetism and the related stellar activity are crucial drivers of ionization, photodissociation, and chemistry. Stellar winds can compress planetary magnetospheres and even strip away the outer layers of their atmospheres, thus having an enormous impact on the atmospheres and the magnetospheres of surrounding exoplanets. Modelling of stellar magnetic fields and their winds is extremely challenging, both from the observational and the theoretical points of view, and only ground breaking advances in observational instrumentation and a deeper theoretical understanding of magnetohydrodynamic processes in stars enable us to model stellar magnetic fields and their winds – and the resulting influence on the atmospheres of surrounding exoplanets – in more and more detail. We have initiated a national and international research network (NFN): ‘Pathways to Habitability – From Disks to Active Stars, Planets to Life’, to address questions on the formation and habitability of environments in young, active stellar/planetary systems. We discuss the work we are carrying out within this project and focus on how stellar evolutionary aspects in relation to activity, magnetic fields and winds influence the erosion of planetary atmospheres in the habitable zone. We present recent results of our theoretical and observational studies based on Zeeman Doppler Imaging (ZDI), field extrapolation methods, wind simulations, and the modeling of planetary upper atmospheres.
Searching for methylamine in Orion-KL using ALMA archival data
Authors: Minamoto Harumi , Oya Yoko , Tomoya Hirota , Nomura Hideko 
Published: January 2020

AbstractMethylamine (CH3NH2) is the simplest amine and thought to be a potential interstellar precursor to the amino acid glycine (NH2CH2COOH). It is confirmed by the experimental work and in terms of exploration in the Solar system, CH3NH2 has been detected in two comets. However, in molecular clouds, a robust detection of CH3NH2 has been reported only for Sgr B2(N) so far, while a variety of complex organic molecules have been detected by radio observations in many star-forming regions. To search for CH3NH2, we used the ALMA Cycle 2 archival data toward Orion Kleinmann-Low nebula (Orion-KL) at Band 6 and found 5 candidate emission at the hot core region. By using the rotation diagram method, we evaluated its tentative column density and rotational temperature to be 4.9×10 cm−2 and 102 K, respectively.
Critical timing of Palmer amaranth (Amaranthus palmeri) removal in sweetpotato
Authors: Smith Stephen C. , Jennings Katherine M. , Monks David W. , Chaudhari Sushila , Schultheis Jonathan R. , Reberg-Horton Chris 
Published: January 2020

AbstractPalmer amaranth is the most common and troublesome weed in North Carolina sweetpotato. Field studies were conducted in Clinton, NC, in 2016 and 2017 to determine the critical timing of Palmer amaranth removal in ‘Covington’ sweetpotato. Palmer amaranth was grown with sweetpotato from transplanting to 2, 3, 4, 5, 6, 7, 8, and 9 wk after transplanting (WAP) and maintained weed-free for the remainder of the season. Palmer amaranth height and shoot dry biomass increased as Palmer amaranth removal was delayed. Season-long competition by Palmer amaranth interference reduced marketable yields by 85% and 95% in 2016 and 2017, respectively. Sweetpotato yield loss displayed a strong inverse linear relationship with Palmer amaranth height. A 0.6% and 0.4% decrease in yield was observed for every centimeter of Palmer amaranth growth in 2016 and 2017, respectively. The critical timing for Palmer amaranth removal, based on 5% loss of marketable yield, was determined by fitting a log-logistic model to the relative yield data and was determined to be 2 WAP. These results show that Palmer amaranth is highly competitive with sweetpotato and should be managed as early as possible in the season. The requirement of an early critical timing of weed removal to prevent yield loss emphasizes the importance of early-season scouting and Palmer amaranth removal in sweetpotato fields. Any delay in removal can result in substantial yield reductions and fewer premium quality roots.
Evaluation of herbicide efficacy and application timing for giant miscanthus (Miscanthus x giganteus) biomass reduction
Authors: Barksdale Nicole , Byrd John D. , Zaccaro Maria Leticia M. , Russell David P. 
Published: January 2020

AbstractGiant miscanthus has the potential to move beyond cultivated fields and invade noncrop areas, but this can be overshadowed by aesthetic appeal and monetary value as a biofuel crop. Most research on giant miscanthus has focused on herbicide tolerance for establishment and production rather than terminating an existing stand. This study was conducted to evaluate herbicide options for control or terminating a stand of giant miscanthus. In 2013 and 2014, field experiments were conducted on established stands of the giant miscanthus cultivars ‘Nagara’ and ‘Freedom.’ Herbicides evaluated in both years included glyphosate, hexazinone, imazapic, imazapyr, clethodim, fluazifop, and glyphosate plus fluazifop. All treatments were applied in summer (June or July) and September. For both years, biomass reduction ranged from 85% to 100% when glyphosate was applied in June or July at 4.5 or 7.3 kg ae ha−1. No other treatment applied at this timing provided more than 50% giant miscanthus biomass reduction 1 yr after application. September applications of glyphosate were not consistent: treatments in 2013 reduced biomass by 40% or less, whereas in 2014, at all rates provided at least 78% biomass reduction. Glyphosate applied in June or July was the only treatment that provided effective and consistent control of giant miscanthus 1 yr after treatment.
Seed production and retention at maturity of blackgrass (Alopecurus myosuroides) and silky windgrass (Apera spica-venti) at wheat harvest
Authors: Bitarafan Zahra , Andreasen Christian 
Published: January 2020

AbstractBlackgrass (Alopecurus myosuroides Huds.) and silky windgrass [Apera spica-venti (L.) P. Beauv.] are becoming a significant problem in Europe. Due to the development of herbicide-resistant biotypes and unwanted side effects of herbicides, there is a need for new integrated weed management strategies to control weeds. Therefore, reducing weed infestations by targeting seed production during crop harvest should be considered. In 2017 and 2018, we estimated the fraction of the total seed production of A. myosuroides and A. spica-venti in a field that potentially could be collected by a grain harvester during winter wheat (Triticum aestivum L.) harvest. Twenty plants of each species were surrounded by a porous net before flowering to trap shed seeds during reproductive development. Seeds were collected and counted weekly up until and immediately before wheat harvest, and the ratio of harvestable seeds to shed seeds during the growing season was determined. Alopecurus myosuroides produced on average 953 seeds plant−1 in 2017 and 3,337 seeds plant−1 in 2018. In 2017 and 2018, 29% and 37% of the total A. myosuroides seeds produced, respectively, were retained on plants at maturity. Apera spica-venti produced on average 1,192 seeds plant−1 in 2017 and 5,678 seeds plant−1 in 2018, and retained 53% and 16% of the seeds at harvest, respectively. If a grain harvester potentially collected approximately 30% of the total seed production of the two grass weeds and removed or killed them, it would reduce seed input to the soil seedbank. However, such methods cannot stand alone to reduce weed pressure.
Initial Results From the Super‐Parameterized E3SM
Authors: Hannah W. M. , Jones C. R. , Hillman B. R. , Norman M. R. , Bader D. C. , Taylor M. A. , Leung L. R. , Pritchard M. S. , Branson M. D. , Lin G. , Pressel K. G. , Lee J. M. 
Published: January 2020

AbstractResults from the new Department of Energy super‐parameterized (SP) Energy Exascale Earth System Model (SP‐E3SM) are analyzed and compared to the traditionally parameterized E3SMv1 and previous studies using SP models. SP‐E3SM is unique in that it utilizes Graphics Processing Unit hardware acceleration, cloud resolving model mean‐state acceleration, and reduced radiation to dramatically increase the model throughput and allow decadal experiments at 100‐km external resolution. It also differs from other SP models by using a spectral element dynamical core on a cubed‐sphere grid and a finer vertical grid with a higher model top. Despite these differences, SP‐E3SM generally reproduces the behavior of other SP models. Tropical wave variability is improved relative to E3SM, including the emergence of a Madden‐Julian Oscillation and a realistic slowdown of Moist Kelvin Waves. However, the distribution of precipitation exhibits indicates an overly frequent occurrence of rain rates less than 1 mm day
, and while the timing of diurnal rainfall shows modest improvements the signal is not as coherent as observations. A notable grid imprinting bias is identified in the precipitation field and attributed to a unique feedback associated with the interactions between the explicit cloud resolving model convection and the spectral element grid structure. Spurious zonal mean column water tendencies due to grid imprinting are quantified—while negligible for the conventionally parameterized E3SM, they become large with super‐parameterization, approaching 10% of the physical tendencies. The implication is that finding a remedy to grid imprinting will become especially important as spectral element dynamical cores begin to be combined with explicitly resolved convection.
A set of monomeric near-infrared fluorescent proteins for multicolor imaging across scales
Authors: Matlashov Mikhail E. , Shcherbakova Daria M. , Alvelid Jonatan , Baloban Mikhail , Pennacchietti Francesca , Shemetov Anton A. , Testa Ilaria , Verkhusha Vladislav V. 
Published: January 2020

AbstractBright monomeric near-infrared (NIR) fluorescent proteins (FPs) are in high demand as protein tags for multicolor microscopy and in vivo imaging. Here we apply rational design to engineer a complete set of monomeric NIR FPs, which are the brightest genetically encoded NIR probes. We demonstrate that the enhanced miRFP series of NIR FPs, which combine high effective brightness in mammalian cells and monomeric state, perform well in both nanometer-scale imaging with diffraction unlimited stimulated emission depletion (STED) microscopy and centimeter-scale imaging in mice. In STED we achieve ~40 nm resolution in live cells. In living mice we detect ~105 fluorescent cells in deep tissues. Using spectrally distinct monomeric NIR FP variants, we perform two-color live-cell STED microscopy and two-color imaging in vivo. Having emission peaks from 670 nm to 720 nm, the next generation of miRFPs should become versatile NIR probes for multiplexed imaging across spatial scales in different modalities.
Spatially and temporally defined lysosomal leakage facilitates mitotic chromosome segregation
Authors: Hämälistö Saara , Stahl Jonathan Lucien , Favaro Elena , Yang Qing , Liu Bin , Christoffersen Line , Loos Ben , Guasch Boldú Claudia , Joyce Johanna A. , Reinheckel Thomas , Barisic Marin , Jäättelä Marja 
Published: January 2020

AbstractLysosomes are membrane-surrounded cytoplasmic organelles filled with a powerful cocktail of hydrolases. Besides degrading cellular constituents inside the lysosomal lumen, lysosomal hydrolases promote tissue remodeling when delivered to the extracellular space and cell death when released to the cytosol. Here, we show that spatially and temporally controlled lysosomal leakage contributes to the accurate chromosome segregation in normal mammalian cell division. One or more chromatin-proximal lysosomes leak in the majority of prometaphases, after which active cathepsin B (CTSB) localizes to the metaphase chromatin and cleaves a small subset of histone H3. Stabilization of lysosomal membranes or inhibition of CTSB activity during mitotic entry results in a significant increase in telomere-related chromosome segregation defects, whereas cells and tissues lacking CTSB and cells expressing CTSB-resistant histone H3 accumulate micronuclei and other nuclear defects. These data suggest that lysosomal leakage and chromatin-associated CTSB contribute to proper chromosome segregation and maintenance of genomic integrity.