bluuebunny/crossref_metadata_2025_split huggingface dataset:
Passive immunization with an extended half-life monoclonal antibody protects Rhesus macaques against aerosolized ricin toxin
Authors: Roy Chad J. , Van Slyke Greta , Ehrbar Dylan , Bornholdt Zachary A. , Brennan Miles B. , Campbell Lioudmila , Chen Michelle , Kim Do , Mlakar Neil , Whaley Kevin J. , Froude Jeffrey W. , Torres-Velez Fernando J , Vitetta Ellen , Didier Peter J. , Doyle-Meyers Lara , Zeitlin Larry , Mantis Nicholas J. 
Published: February 2020

AbstractInhalation of ricin toxin (RT), a Category B biothreat agent, provokes an acute respiratory distress syndrome marked by pro-inflammatory cytokine and chemokine production, neutrophilic exudate, and pulmonary edema. The severity of RT exposure is attributed to the tropism of the toxin’s B subunit (RTB) for alveolar macrophages and airway epithelial cells, coupled with the extraordinarily potent ribosome-inactivating properties of the toxin’s enzymatic subunit (RTA). While there are currently no vaccines or treatments approved to prevent RT intoxication, we recently described a humanized anti-RTA IgG1 MAb, huPB10, that was able to rescue non-human primates (NHPs) from lethal dose RT aerosol challenge if administered by intravenous (IV) infusion within hours of toxin exposure. We have now engineered an extended serum half-life variant of that MAb, huPB10-LS, and evaluated it as a pre-exposure prophylactic. Five Rhesus macaques that received a single intravenous infusion (25 mg/kg) of huPB10-LS survived a lethal dose aerosol RT challenge 28 days later, whereas three control animals succumbed to RT intoxication within 48 h. The huPB10-LS treated animals remained clinically normal in the hours and days following toxin insult, suggesting that pre-existing antibody levels were sufficient to neutralize RT locally. Moreover, pro-inflammatory markers in sera and BAL fluids collected 24 h following RT challenge were significantly dampened in huPB10-LS treated animals, as compared to controls. Finally, we found that all five surviving animals, within days after RT exposure, had anti-RT serum IgG titers against epitopes other than huPB10-LS, indicative of active immunization by residual RT and/or RT-immune complexes.
Asymmetric dynamic interaction shifts synchronized frequency of coupled oscillators
Authors: Yang Seong-Gyu , Hong Hyunsuk , Kim Beom Jun 
Published: February 2020

AbstractInteracting dynamic agents can often exhibit synchronization. It has been reported that the rhythm all agents agree on in the synchronized state could be different from the average of intrinsic rhythms of individual agents. Hinted by such a real-world behavior of the interaction-driven change of the average phase velocity, we propose a modified version of the Kuramoto model, in which the ith oscillator of the phase ϕi interacts with other oscillator j only when the phase difference $${{\phi }}_{{j}}$$ϕj − $${{\phi }}_{i}$$ϕi is in a limited range [−βπ, απ]. From extensive numerical investigations, we conclude that the asymmetric dynamic interaction characterized by β ≠ α leads to the shift of the synchronized frequency with respect to the original distribution of the intrinsic frequency. We also perform and report our computer-based synchronization experiment, which exhibits the expected shift of the synchronized frequency of human participants. In analogy to interacting runners, our result roughly suggests that agents tend to run faster if they are more influenced by runners ahead than behind. We verify the observation by using a simple model of interacting runners.
RETRACTED ARTICLE: Dramatic HIV DNA degradation associated with spontaneous HIV suppression and disease-free outcome in a young seropositive woman following her infection
Authors: Colson Philippe , Dhiver Catherine , Tamalet Catherine , Delerce Jeremy , Glazunova Olga O. , Gaudin Maxime , Levasseur Anthony , Raoult Didier 
Published: February 2020

AbstractStrategies to cure HIV-infected patients by virus-targeting drugs have failed to date. We identified a HIV-1-seropositive woman who spontaneously suppressed HIV replication and had normal CD4-cell counts, no HIV-disease, no replication-competent virus and no cell HIV DNA detected with a routine assay. We suspected that dramatic HIV DNA degradation occurred post-infection. We performed multiple nested-PCRs followed by Sanger sequencing and applied a multiplex-PCR approach. Furthermore, we implemented a new technique based on two hybridization steps on beads prior to next-generation sequencing that removed human DNA then retrieved integrated HIV sequences with HIV-specific probes. We assembled ≈45% of the HIV genome and further analyzed the G-to-A mutations putatively generated by cellular APOBEC3 enzymes that can change tryptophan codons into stop codons. We found more G-to-A mutations in the HIV DNA from the woman than in that of her transmitting partner. Moreover, 74% of the tryptophan codons were changed to stop codons (25%) or were deleted as a possible consequence of gene inactivation. Finally, we found that this woman’s cells remained HIV-susceptible in vitro. Our findings show that she does not exhibit innate HIV-resistance but may have been cured of it by extrinsic factors, a plausible candidate for which is the gut microbiota.
The effect of Matrigel as scaffold material for neural stem cell transplantation for treating spinal cord injury
Authors: Wang Jiuling , Chu Ruiliang , Ni Na , Nan Guoxin 
Published: February 2020

AbstractTraumatic injury to the spinal cord causes permanent loss of function and major personal, social, and economic problems. Cell-based delivery strategies is a promising approach for treating spinal cord injury (SCI). However, the inhospitable microenvironment in the injured spinal cord results in poor cell survival and uncontrolled differentiation of the transplanted stem cells. The combination of a scaffold with cells has been developed with a tendency for achieving greater survival and integration with the host tissue. We investigated the effect of Matrigel combined with neural stem cells (NSCs)in vitroandin vivo. We compared the effect of different types of scaffold on the survival and differentiation of brain-derived NSCs in anin vitroculture. Subsequently, NSCs were transplanted subcutaneously into nude mice to detect graft survival and differentiationin vivo. Finally, phosphate-buffered saline (PBS), Matrigel alone, or Matrigel seeded with NSCs was injected into 48 subacute, clinically relevant rat models of SCI (16 rats per group). Matrigel supported cell survival and differentiation efficientlyin vitroandin vivo. SCI rats transplanted with NSCs in Matrigel showed improved behavioral recovery and neuronal and reactive astrocyte marker expression levels compared to PBS- or Matrigel-transplanted rats. Functional repair and neuronal and reactive astrocyte marker expression was slightly improved in the Matrigel-alone group relative to the PBS group, but not statistically significantly. These data suggest that Matrigel is a promising scaffold material for cell transplantation to the injured spinal cord.
Fully automated plaque characterization in intravascular OCT images using hybrid convolutional and lumen morphology features
Authors: Lee Juhwan , Prabhu David , Kolluru Chaitanya , Gharaibeh Yazan , Zimin Vladislav N. , Dallan Luis A. P. , Bezerra Hiram G. , Wilson David L. 
Published: February 2020

AbstractFor intravascular OCT (IVOCT) images, we developed an automated atherosclerotic plaque characterization method that used a hybrid learning approach, which combined deep-learning convolutional and hand-crafted, lumen morphological features. Processing was done on innate A-line units with labels fibrolipidic (fibrous tissue followed by lipidous tissue), fibrocalcific (fibrous tissue followed by calcification), or other. We trained/tested on an expansive data set (6,556 images), and performed an active learning, relabeling step to improve noisy ground truth labels. Conditional random field was an important post-processing step to reduce classification errors. Sensitivities/specificities were 84.8%/97.8% and 91.4%/95.7% for fibrolipidic and fibrocalcific plaques, respectively. Over lesions, en face classification maps showed automated results that agreed favorably to manually labeled counterparts. Adding lumen morphological features gave statistically significant improvement (p < 0.05), as compared to classification with convolutional features alone. Automated assessments of clinically relevant plaque attributes (arc angle and length), compared favorably to those from manual labels. Our hybrid approach gave statistically improved results as compared to previous A-line classification methods using deep learning or hand-crafted features alone. This plaque characterization approach is fully automated, robust, and promising for live-time treatment planning and research applications.
Preferential targeting cancer-related i-motif DNAs by the plant flavonol fisetin for theranostics applications
Authors: Takahashi Shuntaro , Bhattacharjee Snehasish , Ghosh Saptarshi , Sugimoto Naoki , Bhowmik Sudipta 
Published: February 2020

AbstractThe relationship of i-motif DNAs with cancer has prompted the development of specific ligands to detect and regulate their formation. Some plant flavonols show unique fluorescence and anti-cancer properties, which suggest the utility of the theranostics approach to cancer therapy related to i-motif DNA. We investigated the effect of the plant flavonol, fisetin (Fis), on the physicochemical property of i-motif DNAs. Binding of Fis to the i-motif from the promoter region of the human vascular endothelial growth factor (VEGF) gene dramatically induced the excited state intramolecular proton transfer (ESIPT) reaction that significantly enhanced the intensity of the tautomer emission band of Fis. This unique response was due to the coincidence of the structural change from i-motif to the hairpin-like structure which is stabilized via putative Watson-Crick base pairs between some guanines within the loop region of the i-motif and cytosines in the structure. As a result, the VEGF i-motif did not act as a replication block in the presence of Fis, which indicates the applicability of Fis for the regulation of gene expression of VEGF. The fluorescence and biological properties of Fis may be utilised for theranostics applications for cancers related to a specific cancer-related gene, such as VEGF.
Natural resonance frequency of the brain depends on only intracranial pressure: clinical research
Authors: Goto Tetsuya , Furihata Kenji , Hongo Kazuhiro 
Published: February 2020

AbstractTo understand and control intracranial pressure (ICP) is required for treatments in various clinical situations. To establish non-invasive ICP prediction method, we focused on the natural resonance frequency (NRF) of the brain. The ICP value, pulse waveform of intracranial pressure (PWICP) and cervical carotid pulse waveform (CCPW) were simultaneously collected from patients who underwent neurosurgical treatment. A total of 43 data were obtained from 27 patients. The total measured time was 29,653 seconds and the measured mean ICP value in each data ranged from 3.82 to 69.39 (mean 25.9) hPa. Respiratory synchronized cardiac pulses were selected and following CCPW and PWICP were collected. The transfer characteristics from collected CCPW to PWICP were calculated. The initial negative peak was judged as the NRF of the brain. The relationship between the ICP value and the NRF of the brain was presented on the quadratic functions graph (ICP = 0.0329(NRF)2 + 0.0842NRF; R2 = 0.9952). It means that the individual NRF only depends on their ICP value. The ICP value will be predicted by checking NRF of the brain from somewhere.
Lung Surfactant Accelerates Skin Wound Healing: A Translational Study with a Randomized Clinical Phase I Study
Authors: Mirastschijski Ursula , Schwab Igor , Coger Vincent , Zier Ulrich , Rianna Carmela , He Wei , Maedler Kathrin , Kelm Sørge , Radtke Arlo , Belge Gazanfer , Lindner Patrick , Stahl Frank , Scharpenberg Martin , Lasota Lukas , Timm Jürgen 
Published: February 2020

AbstractLung surfactants are used for reducing alveolar surface tension in preterm infants to ease breathing. Phospholipid films with surfactant proteins regulate the activity of alveolar macrophages and reduce inflammation. Aberrant skin wound healing is characterized by persistent inflammation. The aim of the study was to investigate if lung surfactant can promote wound healing. Preclinical wound models, e.g. cell scratch assays and full-thickness excisional wounds in mice, and a randomized, phase I clinical trial in healthy human volunteers using a suction blister model were used to study the effect of the commercially available bovine lung surfactant on skin wound repair. Lung surfactant increased migration of keratinocytes in a concentration-dependent manner with no effect on fibroblasts. Significantly reduced expression levels were found for pro-inflammatory and pro-fibrotic genes in murine wounds. Because of these beneficial effects in preclinical experiments, a clinical phase I study was initiated to monitor safety and tolerability of surfactant when applied topically onto human wounds and normal skin. No adverse effects were observed. Subepidermal wounds healed significantly faster with surfactant compared to control. Our study provides lung surfactant as a strong candidate for innovative treatment of chronic skin wounds and as additive for treatment of burn wounds to reduce inflammation and prevent excessive scarring.
Weaning and stunting affect nitrogen and carbon stable isotope natural abundances in the hair of young children
Authors: Dailey-Chwalibóg Trenton , Huneau Jean-François , Mathé Véronique , Kolsteren Patrick , Mariotti François , Mostak Md. Rayhan , Alim Md. Abdul , Khan Murad Md. Shamsher Tabris , Khan Md. Abdul Hashem , Guesdon Benjamin , Fouillet Helene 
Published: February 2020

AbstractNatural abundances of stable nitrogen and carbon isotopes (δ15N and δ13C) can vary with both dietary intake and metabolic (specifically catabolic) state. In low-income countries, weaning is a period of dietary transition from milk to plant-based foods and a high-risk period for malnutrition. We explored how diet and malnutrition impact hair δ15N and δ13C in young children by an observational, cross-sectional study in Cox’s Bazar District, Bangladesh [255 children, 6–59 months with 19.6% wasted (7.1% severely) and 36% stunted (9.8% severely)]. Hair δ15N and δ13C exhibited exponential decreases with age, with the loss of one trophic level (3.3‰ and 0.8‰, respectively) from 6 to 48 months, which we associate with the shift from exclusive breastfeeding to complete weaning. After adjustment for age and breastfeeding status, hair isotopic values were unaffected by wasting but lower in severe stunting (−0.45‰ to −0.6‰, P < 0.01). In this population of young children, whose isotopic values in hair primarily depended on age, we failed to observe any effect of wasting, likely due to opposite, compensating effects between dietary and metabolic changes involved. In contrast, we evidenced low δ15N and δ13C values in severely stunted children that likely indicate chronic exposure to diets low in animal products.
Label-free quantitative proteomic analysis of M. longissimus dorsi from cattle during dietary restriction and subsequent compensatory growth
Authors: Mullins Yvonne , Keogh Kate , Kenny David A. , Kelly Alan , O’ Boyle Padraig , Waters Sinéad M. 
Published: February 2020

AbstractCompensatory growth (CG) is a naturally occurring physiological process whereby an animal has the ability to undergo enhanced growth following a period of restricted feeding. This studies objective was to identify key proteins involved in the expression of CG. Forty Holstein Friesian bulls were equally assigned to one of four groups. R1 and R2 groups were subjected to restricted feed allowance for 125 days (Period 1). A1 and A2 animals had ad libitum access to feed in Period 1. Following Period 1, all animals from R1 and A1 were slaughtered. Remaining animals (R2 and A2) were slaughtered following ad libitum access to feed for successive 55 days (Period 2). M. longissimus dorsi samples were collected at slaughter from all animals. Proteins were isolated from samples and subjected to label-free mass spectrometry proteomic quantification. Proteins which were differentially abundant during CG (n = 39) were involved in cellular binding processes, oxidative phosphorylation and mitochondrial function. There was also evidence for up regulation of three pathways involved in nucleotide biosynthesis. Genetic variants in or regulating genes pertaining to proteins identified in this study may hold potential for use as DNA based biomarkers for genomic selection of animals with a greater ability to undergo CG.
Incentive motivation improves numerosity discrimination: Insights from pupillometry combined with drift-diffusion modelling
Authors: Dix Annika , Li Shu-Chen 
Published: February 2020

AbstractRecent studies show that training the approximate number system (ANS) holds promise for improving symbolic math abilities. Extending this line of research, the present study aims to shed light on incentive motivation of numerosity discrimination and the underlying mechanisms. Thirty-two young adults performed a novel incentivized dot comparison task, that we developed, to discern the larger of two numerosities. An EZ-diffusion model was applied to decompose motivational effects on component processes of perceptual decision-making. Furthermore, phasic pupil dilation served as an indicator of the involvement of the salience network. The results of improved accuracy and a higher information accumulation rate under the reward condition suggest that incentive motivation boosts the precision of the ANS. These novel findings extend earlier evidence on reward-related enhancements of perceptual discrimination to the domain of numerosity perception. In light of the Adaptive Gain Theory, we interpret the results in terms of two processes of gain modulation driven by the locus coeruleus-norepinephrine system. Specifically, the reward-induced increase in pupil dilation may reflect incentive modulation of (i) salience attention during reward anticipation towards incentivized stimuli to upregulate stimulus processing that results in a larger drift rate; and (ii) response caution that leads to an increased decision threshold.
Grafting alters tomato transcriptome and enhances tolerance to an airborne virus infection
Authors: Spanò Roberta , Ferrara Massimo , Montemurro Cinzia , Mulè Giuseppina , Gallitelli Donato , Mascia Tiziana 
Published: February 2020

AbstractGrafting of commercial tomato varieties and hybrids on the tomato ecotype Manduria resulted in high levels of tolerance to the infection of Sw5 resistance-breaking strains of tomato spotted wilt virus and of severe cucumber mosaic virus strains supporting hypervirulent satellite RNAs that co-determine stunting and necrotic phenotypes in tomato. To decipher the basis of such tolerance, here we used a RNAseq analysis to study the transcriptome profiles of the Manduria ecotype and of the susceptible variety UC82, and of their graft combinations, exposed or not to infection of the potato virus Y recombinant strain PVYC-to. The analysis identified graft- and virus-responsive mRNAs differentially expressed in UC82 and Manduria, which led to an overall suitable level of tolerance to viral infection confirmed by the appearance of a recovery phenotype in Manduria and in all graft combinations. The transcriptome analysis suggested that graft wounding and viral infection had diverging effects on tomato transcriptome and that the Manduria ecotype was less responsive than the UC82 to both graft wounding and potyviral infection. We propose that the differential response to the two types of stress could account for the tolerance to viral infection observed in the Manduria ecotype as well as in the susceptible tomato variety UC82 self-grafted or grafted on the Manduria ecotype.
Sorting of spatially incoherent optical vortex modes
Authors: Bezerra Daniel O. , Amaral Joao P. , Fonseca Eduardo J. S. , Alves Cleberson R. , Jesus-Silva Alcenísio J. 
Published: February 2020

AbstractCoherent optical vortices have promising applications in quantum and classical optical communication. They add new degrees of freedom to code information. In this context, to implement a tool enabling sorting of spatially multiplexed vortex states is fundamental. By other hand, spatially incoherent vortices can be more robust in propagation through noise media, such as turbulent atmosphere or obstacles that block part of the light. Therefore, in this work we propose directly applying a high-resolution sorting scheme to spatially incoherent vortex states.
The production and application of carbon nanomaterials from high alkali silicate herbaceous biomass
Authors: Osman Ahmed I. , Farrell Charlie , Al-Muhtaseb Ala’a H. , Harrison John , Rooney David W. 
Published: February 2020

AbstractHerein, value-added materials such as activated carbon and carbon nanotubes were synthesized from low-value Miscanthus × giganteus lignocellulosic biomass. A significant drawback of using Miscanthus in an energy application is the melting during the combustion due to its high alkali silicate content. An application of an alternative approach was proposed herein for synthesis of activated carbon from Miscanthus × giganteus, where the produced activated carbon possessed a high surface area and pore volume of 0.92 cm3.g−1 after two activation steps using phosphoric acid and potassium hydroxide. The SBET of the raw biomass, after first activation and second activation methods showed 17, 1142 and 1368 m2.g−1, respectively. Transforming this otherwise waste material into a useful product where its material properties can be utilized is an example of promoting the circular economy by valorising waste lignocellulosic biomass to widely sought-after high surface area activated carbon and subsequently, unconventional multi-walled carbon nanotubes. This was achieved when the activated carbon produced was mixed with nitrogen-based material and iron precursor, where it produced hydrophilic multi-wall carbon nanotubes with a contact angle of θ = 9.88°, compared to the raw biomass. synthesised materials were tested in heavy metal removal tests using a lead solution, where the maximum lead absorption was observed for sample AC-K, with a 90% removal capacity after the first hour of testing. The synthesis of these up-cycled materials can have potential opportunities in the areas of wastewater treatment or other activated carbon/carbon nanotube end uses with a rapid cycle time.
Novel Rickettsia genotypes in ticks in French Guiana, South America
Authors: Binetruy Florian , Buysse Marie , Barosi Roxanne , Duron Olivier 
Published: February 2020

AbstractRickettsia are obligate intracellular bacteria often associated with ticks and best known for causing human diseases (rickettsiosis), including typhus fever and sporadic cases of serious infection. In this study, we conducted a large survey of ticks in French Guiana to understand the overall diversity of Rickettsia in this remote area largely covered by dense rainforests. Out of 819 individuals (22 tick species in six genera), 252 (30.8%) samples were positive for Rickettsia infection. Multilocus typing and phylogenetic analysis identified 19 Rickettsia genotypes, but none was 100% identical to already known Rickettsia species or strains. Among these 19 genotypes, we identified two validated Rickettsia species, Rickettsia amblyommatis (spotted fever group) and Rickettsia bellii (bellii group), and characterized a novel and divergent Rickettsia phylogenetic group, the guiana group. While some tick hosts of these Rickettsia genotypes are among the most common ticks to bite humans in French Guiana, their potential pathogenicity remains entirely unknown. However, we found a strong association between Rickettsia genotypes and their host tick species, suggesting that most of these Rickettsia genotypes may be nonpathogenic forms maintained through transovarial transmission.