bluuebunny/crossref_metadata_2025_split huggingface dataset:
The role of bipartite structure in R&D collaboration networks
Authors: Filho D Vasques , O’Neale Dion R J 
Published: April 2020

AbstractA great number of real-world networks are, in fact, one-mode projections of bipartite networks comprised of two different types of nodes. In the case of interactions between institutions engaging in collaboration for technological innovation, the underlying network is bipartite with institutions (agents) linked to the patents they have filed (artefacts), while the projection is the co-patenting network. Since projected network properties are highly affected by the underlying bipartite structure a lack of understanding of the bipartite network has consequences for the information that might be drawn from the one-mode co-patenting network. Here, we create an empirical bipartite network using data from 2.7 million patents recorded by the European Patent Office. We project this network onto the agents (institutions) and look at properties of both the bipartite and projected networks that may play a role in knowledge sharing and collaboration. We compare these empirical properties to those of synthetic bipartite networks and their projections. We show that understanding the bipartite network topology is critical for understanding the potential flow of technological knowledge. Properties of the bipartite structure, such as degree distributions and small cycles, affect the topology of the one-mode projected network—specifically degree and clustering distributions, and degree assortativity. We propose new network-based metrics as a way to quantify how collaborative agents are in the collaboration network. We find that several large corporations are the most collaborative agents in the network; however, such organizations tend to have a low diversity of collaborators. In contrast, the most prolific institutions tend to collaborate relatively little but with a diverse set of collaborators. This indicates that they concentrate the knowledge of their core technical research while seeking specific complementary knowledge via collaboration with smaller institutions.
Pretreatment of crop residues by ammonia fiber expansion (AFEX) alters the temporal colonization of feed in the rumen by rumen microbes
Authors: Terry Stephanie A , Ribeiro Gabriel O , Conrad Cheyenne C , Beauchemin Karen A , McAllister Tim A , Gruninger Robert J 
Published: April 2020

ABSTRACT
This study examines the colonization of barley straw (BS) and corn stover (CS) by rumen bacteria and how this is impacted by ammonia fiber expansion (AFEX) pre-treatment. A total of four ruminally cannulated beef heifers were used to investigate in situ microbial colonization in a factorial design with two crop residues, pre-treated with or without AFEX. Crop residues were incubated in the rumen for 0, 2, 4, 8 and 48 h and the colonizing profile was determined using 16 s rRNA gene sequencing. The surface colonizing community clustered based on incubation time and pre-treatment. Fibrobacter, unclassified Bacteroidales, and unclassified Ruminococcaceae were enriched during late stages of colonization. Prevotella and unclassified Lachnospiraceae were enriched in the early stages of colonization. The microbial community colonizing BS-AFEX and CS was less diverse than the community colonizing BS and CS-AFEX. Prevotella, Coprococcus and Clostridium were enriched in both AFEX crop residues, while untreated crop residues were enriched with Methanobrevibacter. Several pathways associated with simple carbohydrate metabolism were enriched in the primary colonizing community of AFEX crop residues. This study suggests that AFEX improves the degradability of crop residues by increasing the accessibility of polysaccharides that can be metabolized by the dominant taxa responsible for primary colonization.
Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels
Authors: Vegesna Rahulsimham , Tomaszkiewicz Marta , Ryder Oliver A , Campos-Sánchez Rebeca , Medvedev Paul , DeGiorgio Michael , Makova Kateryna D 
Published: April 2020

AbstractMulticopy ampliconic gene families on the Y chromosome play an important role in spermatogenesis. Thus, studying their genetic variation in endangered great ape species is critical. We estimated the sizes (copy number) of nine Y ampliconic gene families in population samples of chimpanzee, bonobo, and orangutan with droplet digital polymerase chain reaction, combined these estimates with published data for human and gorilla, and produced genome-wide testis gene expression data for great apes. Analyzing this comprehensive data set within an evolutionary framework, we, first, found high inter- and intraspecific variation in gene family size, with larger families exhibiting higher variation as compared with smaller families, a pattern consistent with random genetic drift. Second, for four gene families, we observed significant interspecific size differences, sometimes even between sister species—chimpanzee and bonobo. Third, despite substantial variation in copy number, Y ampliconic gene families’ expression levels did not differ significantly among species, suggesting dosage regulation. Fourth, for three gene families, size was positively correlated with gene expression levels across species, suggesting that, given sufficient evolutionary time, copy number influences gene expression. Our results indicate high variability in size but conservation in gene expression levels in Y ampliconic gene families, significantly advancing our understanding of Y-chromosome evolution in great apes.
Dysphagia and an aberrant subclavian artery: more than just a coincidence
Authors: Dranseika Vilius , Erdil Tugba , Schweiger Martin , Balmer Christian , Pretre Rene , Dave Hitendu 
Published: April 2020

Abstract
Aberrant subclavian artery (arteria lusoria) is the most common congenital malformation of the aortic arch in the general population. As patients are more often asymptomatic, indications for correcting this abnormality, even in those having dysphagia, are very vague. While presenting a case of a 10-year-old girl who suffered from dysphagia lusoria for 2 years before being cured by a simple surgical translocation, we review the literature and debate various aspects of its management from diagnosis to surgery and cosmesis.
Thermal comfort of urban spaces using simulation tools exploring street orientation influence of on the outdoor thermal comfort: a case study of Jeddah, Saudi Arabia
Authors: Hegazy Ibrahim Rizk , Qurnfulah Emad Mohammed 
Published: April 2020

AbstractAt present, the environmental quality of urban regions and outdoor spaces has turn out to be one of the main issues facing both climatologists and designers, which could be identified through their research outcomes. It is argued that the urban configuration affects the micro-climate of the urban outdoor spaces. The street’s orientation form was identified as an element, which impacts the urban environment with regards of receiving passive solar, solar radiation and reflection against urban absorption, wind flow and the possible urban cooling techniques. The key purpose of this study is to look into the urban configuration factors affecting the human thermal outdoor comfort in Jeddah city as an example of hot humid climate regions. To accomplish its aim, the research is divided to two sections. The first one illustrates the problem of the research, then generally reviews the literature associated with the outdoor human thermal comfort; in addition, it discusses the relationship between street orientation and micro-climate. The second section highlight the assessments carried out between four different orientations of urban streets from two different districts in Jeddah city, using ENVI-met software. The research adopts three environmental variables to be examined, namely air temperature, wind speed, relative humidity together with pedestrian thermal comfort as indicators for predicted mean vote, during summer and winter seasons. The outcomes of the comparison assist to identify decisions related street networks to achieve the desirable human outdoor thermal comfort in such an urban environment.
Multiple and Extra-Pair Mating in a Pair-Living Hermaphrodite, the Intertidal LimpetSiphonaria gigas
Authors: Schaefer Jessica L B , Christy John H , Marko Peter B 
Published: April 2020

SynopsisPair-living is a common social system found across animal taxa, and the relationship between pair-living and reproduction varies greatly among species. Siphonaria gigas, hermaphroditic pulmonate gastropods, often live in pairs in the rocky intertidal zone of the tropical Eastern Pacific. Combining genetic parentage analysis using four polymorphic microsatellite loci with behavioral observations from a 10-week field study, we provide the first description of the mating system of a Siphonaria species incorporating genetic data. S. gigas mated both within-pair and extra-pair and three out of four paired S. gigas individuals produced egg masses with extra-pair paternity. Multiple paternity was detected, but at a relatively low frequency (19% of egg masses) compared to other marine gastropods. Behavioral data indicate one potential advantage of pair-living: paired S. gigas produced almost twice as many egg masses as their solitary counterparts over four reproductive cycles. These observations, together with constraints on the movement of S. gigas, suggest that pairing may ensure mate access and increase reproductive success.
Community Structure and Undescribed Species Diversity in Non-Pollinating Fig Wasps Associated with the Strangler Fig Ficus petiolaris
Authors: Satler Jordan D , Bernhard Kristen K , Stireman John O , Machado Carlos A , Houston Derek D , Nason John D 
Published: April 2020

AbstractFigs and their associated mutualistic and parasitic wasps have been a focus of intensive ecological and evolutionary research due to their diversity, unusual reproductive biology, and highly coevolved interspecific relationships. Due to the ecological dependence of their interactions, fig wasps were once considered to be fig-species specific and to cospeciate with their hosts, however, a growing body of evidence reveals mixed support for species specificity and the importance of additional evolutionary processes (e.g., host switching) structuring these long-term interactions. Our research on the genus Idarnes Walker, 1843 (Hymenoptera, Agaonidae), a common non-pollinating wasp of New World fig flowers, reveals a community in which multiple wasp species coexist on the same host in space and time. Using both molecular and morphological data, we identify five distinct Idarnes lineages associated with a single host fig species, Ficus petiolaris Kunth, 1817 (Rosales, Moraceae). A comprehensive phylogenetic analysis including Idarnes species from numerous host fig species reveals that the lineages associated with F. petiolaris do not form a monophyletic group but are distantly related, suggesting multiple independent colonization events and subsequent diversification. Morphological and ecological data provide support that the wasps are partitioning niches within the figs, explaining the coexistence of these diverse lineages on the same host fig. These results, coupled with a growing body of research on pollinating and non-pollinating fig wasps, bring into focus a more dynamic picture of fig and fig wasp coevolution and highlight how wasp lineage divergence and niche partitioning contributes to increased species diversity and community structure on a single fig host.
The Effect of Categorization on Goal Progress Perceptions and Motivation
Authors: Sharif Marissa A , Woolley Kaitlin 
Published: April 2020

AbstractConsumers monitor their goal progress to know how much effort they need to invest to achieve their goals. However, the factors influencing consumers’ goal progress monitoring are largely unexamined. Seven studies (N = 8,409) identified categorization as a novel factor that influences goal progress perceptions, with consequences for motivation. When pursuing a goal, categorization cues lead consumers to perceive that their goal-relevant actions are in separate categories; as a result, consumers anchor their estimates of goal progress on the proportion of categories completed and are less affected by the absolute amount of progress made than when categorization cues are not present. As a result, depending on the proportion of categories completed, categorization can lead consumers to infer greater progress when they are actually farther from their goal, and to infer less progress when they are closer to their goal. We demonstrate consequences of this effect for consumers’ motivation and goal attainment in incentive compatible contexts.
Boolean negation and non-conservativity II: The variable-sharing property
Authors: Øgaard Tore Fjetland 
Published: April 2020

Abstract
Many relevant logics are conservatively extended by Boolean negation. Not all, however. This paper shows an acute form of non-conservativeness, namely that the Boolean-free fragment of the Boolean extension of a relevant logic need not always satisfy the variable-sharing property. In fact, it is shown that such an extension can in fact yield classical logic. For a vast range of relevant logic, however, it is shown that the variable-sharing property, restricted to the Boolean-free fragment, still holds for the Boolean extended logic.
Low-energy core-collapse supernovae in the frame of the jittering jets explosion mechanism
Authors: Gofman Roni Anna , Soker Noam 
Published: April 2020

ABSTRACT
We relate the pre-explosion binding energy of the ejecta of core-collapse supernovae (CCSNe) of stars with masses in the lower range of CCSNe and the location of the convection zones in the pre-collapse core of these stars, to explosion properties in the frame of the jittering jets explosion mechanism. Our main conclusion is that in the frame of the jittering jets explosion mechanism the remnant of a pulsar in these low-energy CCSNe has some significance, in that the launching of jets by the newly born neutron star (NS) spins-up the NS and create a pulsar. We crudely estimated the period of the pulsars to be tens of milliseconds in these cases. The convective zones seed perturbations that lead to accretion of stochastic angular momentum that in turn is assumed to launch jittering jets in this explosion mechanism. We calculate the binding energy and the location of the convective zones with the stellar evolution code mesa. For the lowest stellar masses, we study, MZAMS ≃ 8.5–11 M⊙, the binding energy above the convective zones is low, and so is the expected explosion energy in the jittering jets explosion mechanism that works in a negative feedback cycle. The expected mass of the NS remnant is MNS ≈ 1.25–1.6 M⊙, even for these low-energy CCSNe.
The eye of Gaia on globular clusters structure: tidal tails
Authors: Sollima A 
Published: April 2020

ABSTRACT
I analyse the projected density distribution of member stars over a wide area surrounding 18 Galactic globular clusters using the photometric and astrometric information provided by the second data release of the Gaia mission. A 5D mixture modelling technique has been employed to optimally isolate the signal of the cluster stellar population from the contamination of the Galactic field, taking advantage of its different distribution in the space formed by colours, magnitudes, parallaxes, and proper motions. In 7 clusters I detect collimated overdensities at a &gt;3σ level above the background density extending well beyond the cluster tidal radius, consistent with the distortion expected as a result of the tidal interaction with the Milky Way potential. In five of these clusters (NGC 288, NGC 2298, NGC 5139, NGC 6341, and NGC 7099) spectacular tidal tails extend up to the border of the analysed field of view at 5 deg from the centre. At large distances from the cluster centre, the orientation of the detected overdensities appears to be systematically aligned with the cluster orbital path, in agreement with the predictions of N-body simulations. The fraction of stars contained in the tidal tails of these clusters is also used to determine the first observational estimate of their present-day destruction rates.
Magnetic field configurations in neutron stars from MHD simulations
Authors: Sur Ankan , Haskell Brynmor , Kuhn Emily 
Published: April 2020

ABSTRACT
We have studied numerically the evolution of magnetic fields in barotropic neutron stars, by performing non-linear magnetohydrodynamical simulations with the code pluto. For both initially predominantly poloidal and toroidal fields, with varying strengths, we find that the field settles down to a mixed poloidal–toroidal configuration, where the toroidal component contributes between ${\rm 10}$ and $20 {{\ \rm per\ cent}}$ of the total magnetic energy. This is, however, not a strict equilibrium, as the instability leads to the development of turbulence, which, in turn, gives rise to an inverse helicity cascade, which determines the final ‘twisted torus’ setup. The final field configuration is thus dictated by the non-linear saturation of the instability, and is not stationary. The average energy of the poloidal and toroidal components, however, is approximately stable in our simulations, and a complex multipolar structure emerges at the surface, while the magnetic field is dipolar at the exterior boundary, outside the star.
Intermittent hydrodynamic jets in collapsars do not produce GRBs
Authors: Gottlieb Ore , Levinson Amir , Nakar Ehud 
Published: April 2020

ABSTRACT
Strong variability is a common characteristic of the prompt emission of gamma-ray bursts (GRB). This observed variability is widely attributed to an intermittency of the central engine, through formation of strong internal shocks in the GRB-emitting jet expelled by the engine. In this paper, we study numerically the propagation of hydrodynamic jets, injected periodically by a variable engine, through the envelope of a collapsed star. By post-processing the output of 3D numerical simulations, we compute the net radiative efficiency of the outflow. We find that all intermittent jets are subject to heavy baryon contamination that inhibits the emission at and above the photosphere well below detection limits. This is in contrast to continuous jets that, as shown recently, produce a highly variable gamma-ray photospheric emission with high efficiency, owing to the interaction of the jet with the stellar envelope. Our results challenge the variable engine model for hydrodynamic jets, and may impose constraints on the duty cycle of GRB engines. If such systems exist in nature, they are not expected to produce bright gamma-ray emission, but should appear as X-ray, optical, and radio transients that resemble a delayed GRB afterglow signal.
Improved gastrointestinal health for irritable bowel syndrome with metagenome-guided interventions
Authors: Meydan Cem , Afshinnekoo Ebrahim , Rickard Nate , Daniels Guy , Kunces Laura , Hardy Theresa , Lili Loukia , Pesce Sarah , Jacobson Paul , Mason Christopher E , Dudley Joel , Zhang Bodi 
Published: April 2020

Abstract
Irritable bowel syndrome (IBS) is the most prevalent functional gastrointestinal disorder worldwide, and the most common reason for referral to gastroenterology clinics. However, the pathophysiology is still not fully understood and consequently current management guidelines are very symptom-specific, leading to mixed results. Here we present a study of 88 individuals with IBS who had baseline sequencing of their gut microbiome (stool samples), received targeted interventions that included dietary, supplement, prebiotic/probiotic, and lifestyle recommendations for a 30-day period, and a follow-up sequencing of their gut microbiome. The study's objectives were to demonstrate unique metagenomic signatures across the IBS phenotypes and to validate whether metagenomic-guided interventions could lead to improvement of symptom scores in individuals with IBS. Enrolled subjects also completed a baseline and post-intervention questionnaire that assessed their symptom scores. The average symptom score of an individual with IBS at baseline was 160 and at the endpoint of the study the average symptom score of the cohort was 100.9. The mixed IBS subtype showed the most significant reduction in symptom scores across the different subtypes (average decrease by 102 points, P = 0.005). The metagenomics analysis reveals shifts in the microbiome post-intervention that have been cross-validated with the literature as being associated with improvement of IBS symptoms. Given the complex nature of IBS, further studies with larger sample sizes, more targeted analyses, and a broader population cohort are needed to explore these results further.
Interventions for Breast Cancer–Related Lymphedema: Clinical Practice Guideline From the Academy of Oncologic Physical Therapy of APTA
Authors: Davies Claire , Levenhagen Kimberly , Ryans Kathryn , Perdomo Marisa , Gilchrist Laura 
Published: April 2020

Abstract
A work group from the American Physical Therapy Association (APTA) Academy of Oncologic Physical Therapy developed a clinical practice guideline to aid clinicians in identifying interventions for people with breast cancer–related lymphedema, targeting volume reduction, beginning at breast cancer diagnosis and continuing through cancer treatments and survivorship. Following a systematic review of published studies and a structured appraisal process, recommendations were developed to guide physical therapists and other health care clinicians in their intervention selection. Overall, clinical practice recommendations were formulated based on the evidence for each intervention and were assigned a grade based on the strength of the evidence. The evidence for each specific intervention was synthesized and appraised by lymphedema stage, when the information was available. In an effort to make recommendations clinically applicable, they were presented by modality throughout the care trajectory. Methodology and research populations varied significantly across studies, and it will be important for future research to use standardized definitions for participant characteristics, diagnostic criteria, and interventions.
Association between shift work and biological factors including FGF-23, klotho, and serum 25-(OH) vitamin D3 among Korean firefighters: a cross-sectional study
Authors: Min Jeehee , Jang Tae-Won , Ahn Yeon Soon , Sim Chang Sun , Jeong Kyoung Sook 
Published: April 2020

Abstract

Study Objectives
Shift work is known to be detrimental to an individual’s health as it disrupts the circadian rhythm and is a risk factor for cancer. It has been reported that elevated fibroblast growth factor (FGF)-23, increased serum soluble α-klotho, and decreased vitamin D3 are associated with cancer progression. We studied the relationship between shift work and the levels of FGF-23, α-klotho, and vitamin D3 amongst firefighters, as they work in long shifts outside the traditional daytime schedule.

Methods
The study consisted of 450 participants who were firefighters. We measured FGF-23, α-klotho, and vitamin D3 levels in their blood and a set of questionnaires were given to the participants to evaluate their health habits. After determining and adjusting for potential confounding factors, we compared the levels of FGF-23, α-klotho, and serum vitamin D3 by job and shift types.

Results
FGF-23 and α-klotho levels were significantly higher in shift workers than traditional day workers, and in 3-day cycle shift workers than workers with another shift schedule. When the levels of these substances were compared based on different types of jobs, firefighters had a lower level of vitamin D3. We conclude that shift work is positively correlated with the levels of FGF-23 and α-klotho.

Conclusions
Levels of FGF-23 and α-klotho were linked to shift work and job types. Although vitamin levels did not differ by shift types, vitamin D3 levels were lower in firefighters. These findings suggest that high levels of FGF-23 and α-klotho are potential risk factors for cancer among firefighters.