bluuebunny/crossref_metadata_2025_split huggingface dataset:
Children’s neurodevelopment of reading is affected by China’s language input system in the information era
Authors: Zhou Wei , Kwok Veronica P. Y. , Su Mengmeng , Luo Jin , Tan Li Hai 
Published: April 2020

AbstractCommunications through electronic devices require knowledge in typewriting, typically with the pinyin input method in China. Yet, the over utilization of the pronunciation-based pinyin input method may violate the traditional learning processes of written Chinese, which involves abundant visual orthographic analysis of characters and repeated writing. We used functional magnetic resonance imaging to examine the influence of pinyin typing on reading neurodevelopment of intermediate Chinese readers (age 9–11). We found that, relative to less frequent pinyin users, more frequent pinyin users showed an overall weaker pattern of cortical activations in the left middle frontal gyrus, left inferior frontal gyrus, and right fusiform gyrus in performing reading tasks. In addition, more frequent pinyin typists had relatively less gray matter volume in the left middle frontal region, a site known to be crucial for Chinese reading. This study demonstrates that Chinese children’s brain development in the information era is affected by the frequent use of the pinyin input method.
An interactive database of Leishmania species distribution in the Americas
Authors: Herrera Giovanny , Barragán Natalia , Luna Nicolás , Martínez David , De Martino Frasella , Medina Julián , Niño Sergio , Páez Luisa , Ramírez Angie , Vega Laura , Velandia Valeria , Vera Michelle , Zúñiga María Fernanda , Bottin Marius Jean , Ramírez Juan David 
Published: April 2020

AbstractThe Americas have an elevated number of leishmaniasis cases (accounting for two-thirds of the worldwide disease burden) and circulating Leishmania species, and are therefore of interest in terms of epidemiological surveillance. Here, we present a systematic review of Leishmania parasite species circulating in the countries of the American continent, together with complementary information on epidemiology and geospatial distribution. A database was built from data published between 1980 and 2018 on Leishmania species identified in most of the American countries. A total of 1499 georeferenced points were extracted from published articles and subsequently located to 14 countries in the Americas. This database could be used as a reference when surveilling the occurrence of Leishmania species in the continent.
Version 4 of the CRU TS monthly high-resolution gridded multivariate climate dataset
Authors: Harris Ian , Osborn Timothy J. , Jones Phil , Lister David 
Published: April 2020

AbstractCRU TS (Climatic Research Unit gridded Time Series) is a widely used climate dataset on a 0.5° latitude by 0.5° longitude grid over all land domains of the world except Antarctica. It is derived by the interpolation of monthly climate anomalies from extensive networks of weather station observations. Here we describe the construction of a major new version, CRU TS v4. It is updated to span 1901–2018 by the inclusion of additional station observations, and it will be updated annually. The interpolation process has been changed to use angular-distance weighting (ADW), and the production of secondary variables has been revised to better suit this approach. This implementation of ADW provides improved traceability between each gridded value and the input observations, and allows more informative diagnostics that dataset users can utilise to assess how dataset quality might vary geographically.
The Impact of Voice Leading and Harmony on Musical Expectancy
Authors: Wall Leona , Lieck Robert , Neuwirth Markus , Rohrmeier Martin 
Published: April 2020

AbstractIn Western tonal music, voice leading (VL) and harmony are two central concepts influencing whether a musical sequence is perceived as well-formed. However, experimental studies have primarily focused on the effect of harmony on the cognitive processing of polyphonic music. The additional effect of VL remains unknown, despite music theory suggesting VL to be tightly connected to harmony. Therefore, the aim of this study was to investigate and compare the effects of both VL and harmony on listener expectations. Using a priming paradigm and a choice reaction time task, participants (N = 34) were asked to indicate whether the final chord in a sequence had a different timbre than the preceding ones (cover task), with the experimental conditions being good and poor VL or harmony, respectively. An analysis with generalised mixed effects models revealed a significant influence of both VL and harmony on reaction times (RTs). Moreover, pairwise comparison showed significantly faster RTs when VL was good as compared to both VL and harmony being poor, which was not the case when only harmony was good. This study thus provides evidence for the additional importance of VL for the processing of Western polyphonic music.
Characterisation of cuticular inflation development and ultrastructure in Trichuris muris using correlative X-ray computed tomography and electron microscopy
Authors: O’Sullivan James D. B. , Cruickshank Sheena M. , Starborg Tobias , Withers Philip J. , Else Kathryn J. 
Published: April 2020

AbstractThe parasitic nematode Trichuris trichiura is a significant burden on public health in developing countries, and currently available drugs exhibit a poor cure rate. Worms live within a specialised tunnel of host intestinal epithelial cells and have anterior-ventral projections of the cuticle termed “cuticular inflations”, which are thought to be involved in host-parasite interactions. This work aimed to characterise structure and suggest a function of cuticular inflations in the most tractable and widely-used model of trichuriasis, Trichuris muris. Using scanning electron microscopy, we show for the first time that most cuticular inflations develop between the second and third larval moults. Correlative X-ray computed tomography (CT)-steered Serial Block Face Scanning Electron Microscopy (SBF-SEM) and transmission electron microscopy enabled ultrastructural imaging of cuticular inflations, and showed the presence of an additional, web-like layer of cuticle between the median and cortical layers of the inflation. Additionally, we characterised variation in inflation morphology, resolving debate as to the inflations’ true shape in situ. Cells underlying the inflations had many mitochondria, and we highlight their potential capacity for active transport as an area for future investigation. Overall, insights from the powerful imaging techniques used provide an excellent basis for future study of cuticular inflation function.
Effect of High Intensity Interval Training on Matrix Metalloproteinases in Women with Breast Cancer Receiving Anthracycline-Based Chemotherapy
Authors: Lee Kyuwan , Kang Irene , Mack Wendy J. , Mortimer Joanne , Sattler Fred , Salem George , Dieli-Conwright Christina M. 
Published: April 2020

AbstractAnthracycline chemotherapy is commonly used to treat breast cancer yet may increase the level of matrix metalloproteinases (MMP) -2 and -9, which increase the risk of atherosclerosis. While exercise has been shown to reduce the level of MMP in patients with diabetes, high intensity interval training (HIIT) has not been utilized to improve level of MMP in women with breast cancer receiving anthracycline chemotherapy. Thirty women were randomized to either 8-week HIIT or control (CON) group. The CON group was offered the HIIT intervention after 8 weeks. MMP-1, -2 -7, -9, tissue inhibitor of MMP (TIMP) -1, and-2 were measured at baseline and post-intervention. Repeated measures ANCOVA and paired t-test were performed to assess changes in MMP and TIMP. Post-intervention, no significant between-group differences were observed for MMP and TIMP. However, within-group decrease in MMP-9 was observed in the HIIT group [104.3(51.9) to 65.2(69.1); P = 0.01]. MMP-9 in the CON group was not significantly changed [115.5(47.2) to 90.4(67.9);]. MMP-2 significantly increased in both the HIIT group [76.6(11.2) to 83.2(13.1); P = 0.007) and the CON group [69.0(8.9) to 77.6(11.1) P = 0.003). It is unclear whether an 8-week HIIT intervention influences MMP-9 in breast cancer patients undergoing anthracycline chemotherapy. Additional investigations are required to understand the exercise-induced changes in MMP-2 and -9 in women undergoing anthracycline chemotherapy.
Copious positron production by femto-second laser via absorption enhancement in a microstructured surface target
Authors: Wang Ye-Chen , Yin Yan , Wang Wei-Quan , Zou De-Bin , Miao Wen-Xuan , Yu Tong-Pu , Shao Fu-Qiu 
Published: April 2020

AbstractLaser-driven positron production is expected to provide a non-radioactive, controllable, radiation tunable positron source in laboratories. We propose a novel approach of positron production by using a femto-second laser irradiating a microstructured surface target combined with a high-Z converter. By numerical simulations, it is shown that both the temperature and the maximum kinetic energy of electrons can be greatly enhanced by using a microstructured surface target instead of a planar target. When these energetic electrons shoot into a high Z converter, copious positrons are produced via Bethe-Heitler mechanism. With a laser (wavelength λ = 1 μm) with duration ~36 fs, intensity ~5.5 × 1020 W/cm2 and energy ~6 Joule, ~109 positrons can be obtained.
Transmission of Superoscillations
Authors: Zarkovsky S. , Ben-Ezra Y. , Schwartz M. 
Published: April 2020

AbstractIt is widely accepted that a signal bandlimited by σ cannot oscillate at higher frequencies. The phenomenon of superoscillation provides a refutation of that quite general belief. Temporal superoscillations have been rarely demonstrated and are mostly treated as a mathematical curiosity. In the present article we demonstrate experimentally for the first time to our best knowledge, the transmission of superoscillating signals through commercial low pass filters. The experimental system used for the demonstration is described, providing the insight into the transmission of superoscillations, or super-narrow pulses. Thus, while the phenomenon may seem rather esoteric, a very simple system is used for our demonstration.
The HSP90 inhibitor Onalespib exerts synergistic anti-cancer effects when combined with radiotherapy: an in vitro and in vivo approach
Authors: Spiegelberg Diana , Abramenkovs Andris , Mortensen Anja Charlotte Lundgren , Lundsten Sara , Nestor Marika , Stenerlöw Bo 
Published: April 2020

AbstractOncogenic client-proteins of the chaperone Heat shock protein 90 (HSP90) insure unlimited tumor growth and are involved in resistance to chemo- and radiotherapy. The HSP90 inhibitor Onalespib initiates the degradation of oncoproteins, and might also act as a radiosensitizer. The aim of this study was therefore to evaluate the efficacy of Onalespib in combination with external beam radiotherapy in an in vitro and in vivo approach. Onalespib downregulated client proteins, lead to increased apoptosis and caused DNA-double-strands. Monotherapy and combination with radiotherapy reduced colony formation, proliferation and migration assessed in radiosensitive HCT116 and radioresistant A431 cells. In vivo, a minimal treatment regimen for 3 consecutive days of Onalespib (3 × 10 mg/kg) doubled survival, whereas Onalespib with radiotherapy (3 × 2 Gy) caused a substantial delay in tumor growth and prolonged the survival by a factor of 3 compared to the HCT116 xenografted control group. Our results demonstrate that Onalespib exerts synergistic anti-cancer effects when combined with radiotherapy, most prominent in the radiosensitive cell models. We speculate that the depletion and downregulation of client proteins involved in signalling, migration and DNA repair mechanisms is the cause. Thus, individually, or in combination with radiotherapy Onalespib inhibits tumor growth and has the potential to improve radiotherapy outcomes, prolonging the overall survival of cancer patients.
Deep Learning Method for Mandibular Canal Segmentation in Dental Cone Beam Computed Tomography Volumes
Authors: Jaskari Joel , Sahlsten Jaakko , Järnstedt Jorma , Mehtonen Helena , Karhu Kalle , Sundqvist Osku , Hietanen Ari , Varjonen Vesa , Mattila Vesa , Kaski Kimmo 
Published: April 2020

AbstractAccurate localisation of mandibular canals in lower jaws is important in dental implantology, in which the implant position and dimensions are currently determined manually from 3D CT images by medical experts to avoid damaging the mandibular nerve inside the canal. Here we present a deep learning system for automatic localisation of the mandibular canals by applying a fully convolutional neural network segmentation on clinically diverse dataset of 637 cone beam CT volumes, with mandibular canals being coarsely annotated by radiologists, and using a dataset of 15 volumes with accurate voxel-level mandibular canal annotations for model evaluation. We show that our deep learning model, trained on the coarsely annotated volumes, localises mandibular canals of the voxel-level annotated set, highly accurately with the mean curve distance and average symmetric surface distance being 0.56 mm and 0.45 mm, respectively. These unparalleled accurate results highlight that deep learning integrated into dental implantology workflow could significantly reduce manual labour in mandibular canal annotations.
Monitoring protease activity in biological tissues using antibody prodrugs as sensing probes
Authors: Vasiljeva Olga , Menendez Elizabeth , Nguyen Margaret , Craik Charles S. , Michael Kavanaugh W. 
Published: April 2020

AbstractProteases have been implicated in the development of many pathological conditions, including cancer. Detection of protease activity in diseased tissues could therefore be useful for diagnosis, prognosis, and the development of novel therapeutic approaches. Due to tight post-translational regulation, determination of the expression level of proteases alone may not be indicative of protease activities, and new methods for measuring protease activity in biological samples such as tumor biopsies are needed. Here we report a novel zymography-based technique, called the IHZTM assay, for the detection of specific protease activities in situ. The IHZ assay involves imaging the binding of a protease-activated monoclonal antibody prodrug, called a Probody® therapeutic, to tissue. Probody therapeutics are fully recombinant, masked antibodies that can only bind target antigen after removal of the mask by a selected protease. A fluorescently labeled Probody molecule is incubated with a biological tissue, thereby enabling its activation by tissue endogenous proteases. Protease activity is measured by imaging the activated Probody molecule binding to antigen present in the sample. The method was evaluated in xenograft tumor samples using protease specific substrates and inhibitors, and the measurements correlated with efficacy of the respective Probody therapeutics. Using this technique, a diverse profile of MMP and serine protease activities was characterized in breast cancer patient tumor samples. The IHZ assay represents a new type of in situ zymography technique that can be used for the screening of disease-associated proteases in patient samples from multiple pathological conditions.
Challenges and opportunities for strain verification by whole-genome sequencing
Authors: Gallegos Jenna E. , Hayrynen Sergei , Adames Neil R. , Peccoud Jean 
Published: April 2020

AbstractLaboratory strains, cell lines, and other genetic materials change hands frequently in the life sciences. Despite evidence that such materials are subject to mix-ups, contamination, and accumulation of secondary mutations, verification of strains and samples is not an established part of many experimental workflows. With the plummeting cost of next generation technologies, it is conceivable that whole genome sequencing (WGS) could be applied to routine strain and sample verification in the future. To demonstrate the need for strain validation by WGS, we sequenced haploid yeast segregants derived from a popular commercial mutant collection and identified several unexpected mutations. We determined that available bioinformatics tools may be ill-suited for verification and highlight the importance of finishing reference genomes for commonly used laboratory strains.
Mitigation of greenhouse gas emissions through optimized irrigation and nitrogen fertilization in intensively managed wheat–maize production
Authors: Zhang Xin , Xiao Guangmin , Li Hu , Wang Ligang , Wu Shuxia , Wu Wenliang , Meng Fanqiao 
Published: April 2020

AbstractIn the wheat–maize rotation cultivation system in northern China, excessive irrigation and over-fertilization have depleted groundwater and increased nitrogen (N) losses. These problems can be addressed by optimized N fertilization and water-saving irrigation. We evaluated the effects of these practices on greenhouse gas emissions (GHG), net profit, and soil carbon (C) sequestration. We conducted a field experiment with flood irrigation (FN0, 0 kg N ha−1 yr−1, FN600, 600 kg N ha−1 yr−1) and drip fertigation treatments (DN0, 0 kg N ha−1 yr−1; DN420, 420 kg N ha−1 yr−1; DN600, 600 kg N ha−1 yr−1) in 2015–2017. Compared with FN600, DN600 decreased direct GHGs (N2O + CH4) emissions by 21%, and increased the net GHG balance, GHG intensity, irrigation water-use efficiency (IWUE), and soil organic C content (ΔSOC) by 13%, 12%, 88%, and 89.8%, respectively. Higher costs in DN600 (for electricity, labour, polyethylene) led to a 33.8% lower net profit than in FN600. Compared with FN600, DN420 reduced N and irrigation water by 30% and 46%, respectively, which increased partial factor productivity and IWUE (by 49% and 94%, respectively), but DN420 did not affect GHG mitigation or net profit. Because lower profit is the key factor limiting the technical extension of fertigation, financial subsidies should be made available for farmers to install fertigation technology.
Microbial lag phase can be indicative of, or independent from, cellular stress
Authors: Hamill Philip G. , Stevenson Andrew , McMullan Phillip E. , Williams James P. , Lewis Abiann D. R. , S Sudharsan , Stevenson Kath E. , Farnsworth Keith D. , Khroustalyova Galina , Takemoto Jon Y. , Quinn John P. , Rapoport Alexander , Hallsworth John E. 
Published: April 2020

AbstractMeasures of microbial growth, used as indicators of cellular stress, are sometimes quantified at a single time-point. In reality, these measurements are compound representations of length of lag, exponential growth-rate, and other factors. Here, we investigate whether length of lag phase can act as a proxy for stress, using a number of model systems (Aspergillus penicillioides; Bacillus subtilis; Escherichia coli; Eurotium amstelodami, E. echinulatum, E. halophilicum, and E. repens; Mrakia frigida; Saccharomyces cerevisiae; Xerochrysium xerophilum; Xeromyces bisporus) exposed to mechanistically distinct types of cellular stress including low water activity, other solute-induced stresses, and dehydration-rehydration cycles. Lag phase was neither proportional to germination rate for X. bisporus (FRR3443) in glycerol-supplemented media (r2 = 0.012), nor to exponential growth-rates for other microbes. In some cases, growth-rates varied greatly with stressor concentration even when lag remained constant. By contrast, there were strong correlations for B. subtilis in media supplemented with polyethylene-glycol 6000 or 600 (r2 = 0.925 and 0.961), and for other microbial species. We also analysed data from independent studies of food-spoilage fungi under glycerol stress (Aspergillus aculeatinus and A. sclerotiicarbonarius); mesophilic/psychrotolerant bacteria under diverse, solute-induced stresses (Brochothrix thermosphacta, Enterococcus faecalis, Pseudomonas fluorescens, Salmonella typhimurium, Staphylococcus aureus); and fungal enzymes under acid-stress (Terfezia claveryi lipoxygenase and Agaricus bisporus tyrosinase). These datasets also exhibited diversity, with some strong- and moderate correlations between length of lag and exponential growth-rates; and sometimes none. In conclusion, lag phase is not a reliable measure of stress because length of lag and growth-rate inhibition are sometimes highly correlated, and sometimes not at all.
Scavenging crustacean fauna in the Chilean Patagonian Sea
Authors: Figueroa-Muñoz Guillermo , Retamal Marco , De Los Ríos Patricio R. , Esse Carlos , Pérez-Schultheiss Jorge , Vega-Aguayo Rolando , Boyero Luz , Correa-Araneda Francisco 
Published: April 2020

AbstractThe marine ecosystem of the Chilean Patagonia is considered structurally and functionally unique, because it is the transition area between the Antarctic climate and the more temperate Pacific region. However, due to its remoteness, there is little information about Patagonian marine biodiversity, which is a problem in the face of the increasing anthropogenic activity in the area. The aim of this study was to analyze community patterns and environmental characteristics of scavenging crustaceans in the Chilean Patagonian Sea, as a basis for comparison with future situations where these organisms may be affected by anthropogenic activities. These organisms play a key ecological role in marine ecosystems and constitute a main food for fish and dolphins, which are recognized as one of the main tourist attractions in the study area. We sampled two sites (Puerto Cisnes bay and Magdalena sound) at four different bathymetric strata, recording a total of 14 taxa that included 7 Decapoda, 5 Amphipoda, 1 Isopoda and 1 Leptostraca. Taxon richness was low, compared to other areas, but similar to other records in the Patagonian region. The crustacean community presented an evident differentiation between the first stratum (0–50 m) and the deepest area in Magdalena sound, mostly influenced byPseudorchomenesp. and a marked environmental stratification. This species andIsaeopsissp. are two new records for science. The discovery of undescribed species evidences that this region needs further studies exploring its biodiversity, which is most likely being already impacted by anthropogenic pressure.
MicroRNA-124 Reduces Arsenic-induced Endoplasmic Reticulum Stress and Neurotoxicity and is Linked with Neurodevelopment in Children
Authors: Park Hae-Ryung , Sun Ryan , Panganiban Ronald A. , Christiani David C. , Lu Quan 
Published: April 2020

AbstractArsenic (As) exposure adversely affects neurodevelopment in children. Accumulation of misfolded proteins in cells exposed to As leads to endoplasmic reticulum (ER) stress response, which, if not relieved, results in cell death. Despite the potential role of ER stress for As-induced neurotoxicity, the underlying mechanisms remain poorly understood. Here we aimed to investigate the roles of microRNA(miR)-124, a novel ER stress suppressor, in As-induced ER stress response and cytotoxicity in neural cells. We further aimed to link these in vitro findings to neurodevelopmental outcomes in children who were exposed to As. Using Quantitative RT-PCR and Cyquant assay, we showed that miR-124 protects against As-induced cytotoxicity in neural cells with concomitant suppression of As-induced ER stress. In addition, As-induced cytotoxicity was exacerbated in miR-124 knockout cells generated by CRISPR-based gene editing compared scramble control. Furthermore, we identified two miR-124 SNPs rs67543816 (p = 0.0003) and rs35418153 (p = 0.0004) that are significantly associated with a mental composite score calculated from the Bayley Scales of Infant Development III in Bangladesh children. Our study reveals As-induced ER stress as a crucial mechanism underlying the toxic effects of As on neural cell function and neurodevelopment and identifies miR-124 as a potential preventative and therapeutic target against detrimental effects of As exposure in children.