bluuebunny/crossref_metadata_2025_split huggingface dataset:
Assessing the interplay between human mobility and mosquito borne diseases in urban environments
Authors: Massaro Emanuele , Kondor Daniel , Ratti Carlo 
Published: November 2019

AbstractUrbanization drives the epidemiology of infectious diseases to many threats and new challenges. In this research, we study the interplay between human mobility and dengue outbreaks in the complex urban environment of the city-state of Singapore. We integrate both stylized and mobile phone data-driven mobility patterns in an agent-based transmission model in which humans and mosquitoes are represented as agents that go through the epidemic states of dengue. We monitor with numerical simulations the system-level response to the epidemic by comparing our results with the observed cases reported during the 2013 and 2014 outbreaks. Our results show that human mobility is a major factor in the spread of vector-borne diseases such as dengue even on the short scale corresponding to intra-city distances. We finally discuss the advantages and the limits of mobile phone data and potential alternatives for assessing valuable mobility patterns for modeling vector-borne diseases outbreaks in cities.
Aspirin enhances cisplatin sensitivity of resistant non-small cell lung carcinoma stem-like cells by targeting mTOR-Akt axis to repress migration
Authors: Khan Poulami , Bhattacharya Apoorva , Sengupta Debomita , Banerjee Shruti , Adhikary Arghya , Das Tanya 
Published: November 2019

AbstractConventional chemotherapeutic regimens are unable to prevent metastasis of non-small cell lung carcinoma (NSCLC) thereby leaving cancer incurable. Cancer stem cells (CSCs) are considered to be the origin of this therapeutic limitation. In the present study we report that the migration potential of NSCLCs is linked to its CSC content. While cisplatin alone fails to inhibit the migration of CSC-enriched NSCLC spheroids, in a combination with non-steroidal anti inflammatory drug (NSAID) aspirin retards the same. A search for the underlying mechanism revealed that aspirin pre-treatment abrogates p300 binding both at TATA-box and initiator (INR) regions of mTOR promoter of CSCs, thereby impeding RNA polymerase II binding at those sites and repressing mTOR gene transcription. As a consequence of mTOR down-regulation, Akt is deactivated via dephosphorylation at Ser473 residue thereby activating Gsk3β that in turn causes destabilization of Snail and β-catenin, thus reverting epithelial to mesenchymal transition (EMT). However, alone aspirin fails to hinder migration since it does not inhibit the Integrin/Fak pathway, which is highly activated in NSCLC stem cells. On the other hand, in aspirin pre-treated CSCs, cisplatin stalls migration by hindering the integrin pathway. These results signify the efficacy of aspirin in sensitizing NSCLC stem cells towards the anti-migration effect of cisplatin. Cumulatively, our findings raise the possibility that aspirin might emerge as a promising drug in combinatorial therapy with the existing chemotherapeutic agents that fail to impede migration of NSCLC stem cells otherwise. This may consequently lead to the advancement of remedial outcome for the metastatic NSCLCs.
Hydrodynamic controls on connectivity of the high commercial value shrimp Parapenaeus longirostris (Lucas, 1846) in the Mediterranean Sea
Authors: Quattrocchi Giovanni , Sinerchia Matteo , Colloca Francesco , Fiorentino Fabio , Garofalo Germana , Cucco Andrea 
Published: November 2019

AbstractIn the Strait of Sicily (SoS), a wide passage of the Mediterranean Sea, Parapenaeus longirostris, (Lucas, 1846; DPS hereafter) is the main target species of trawl fisheries, with an estimated annual market value of about 80 million euro. The exploitation of this resource is shared between Italian, Tunisian and Maltese bottom trawlers and its management raises social, economic and environmental interests. Recent stock assessment revealed high fishing mortalities and low size at first capture, thus promoting the adoption of a strategic plan for a sustainable management. However, the current knowledge of the geographical boundaries of the stock, supporting the implementation of such management plan is still poor. In this respect, under different hydrodynamic regimes, particle-tracking modelling was used to explore connectivity between both, known and unexplored, spawning and nursery areas of DPS in the SoS. Ensembles scenarios derived by model outcomes displayed decadal changes in connectivity between spawning and nursery areas in the north side of the SoS, hence confirming the presence of a single stock in this area. Expanding the area of investigation, the model results showed weak connectivity between spawning ground in the north side of SoS and nurseries on the African shelf-break. This method could support the spatial management of the stock, such as the protection of the nursery and spawning areas, by providing estimates of how connectivity is influenced by hydrodynamic regimes at different temporal and spatial scales.
Deep learning segmentation of major vessels in X-ray coronary angiography
Authors: Yang Su , Kweon Jihoon , Roh Jae-Hyung , Lee Jae-Hwan , Kang Heejun , Park Lae-Jeong , Kim Dong Jun , Yang Hyeonkyeong , Hur Jaehee , Kang Do-Yoon , Lee Pil Hyung , Ahn Jung-Min , Kang Soo-Jin , Park Duk-Woo , Lee Seung-Whan , Kim Young-Hak , Lee Cheol Whan , Park Seong-Wook , Park Seung-Jung 
Published: November 2019

AbstractX-ray coronary angiography is a primary imaging technique for diagnosing coronary diseases. Although quantitative coronary angiography (QCA) provides morphological information of coronary arteries with objective quantitative measures, considerable training is required to identify the target vessels and understand the tree structure of coronary arteries. Despite the use of computer-aided tools, such as the edge-detection method, manual correction is necessary for accurate segmentation of coronary vessels. In the present study, we proposed a robust method for major vessel segmentation using deep learning models with fully convolutional networks. When angiographic images of 3302 diseased major vessels from 2042 patients were tested, deep learning networks accurately identified and segmented the major vessels in X-ray coronary angiography. The average F1 score reached 0.917, and 93.7% of the images exhibited a high F1 score > 0.8. The most narrowed region at the stenosis was distinctly captured with high connectivity. Robust predictability was validated for the external dataset with different image characteristics. For major vessel segmentation, our approach demonstrated that prediction could be completed in real time with minimal image preprocessing. By applying deep learning segmentation, QCA analysis could be further automated, thereby facilitating the use of QCA-based diagnostic methods.
Unraveling nonlinear electrophysiologic processes in the human visual system with full dimension spectral analysis
Authors: Nguyen Kien Trong , Liang Wei-Kuang , Lee Victor , Chang Wen-Sheng , Muggleton Neil G. , Yeh Jia-Rong , Huang Norden E. , Juan Chi-Hung 
Published: November 2019

AbstractNatural sensory signals have nonlinear structures dynamically composed of the carrier frequencies and the variation of the amplitude (i.e., envelope). How the human brain processes the envelope information is still poorly understood, largely due to the conventional analysis failing to quantify it directly. Here, we used a recently developed method, Holo-Hilbert spectral analysis, and steady-state visually evoked potential collected using electroencephalography (EEG) recordings to investigate how the human visual system processes the envelope of amplitude-modulated signals, in this case with a 14 Hz carrier and a 2 Hz envelope. The EEG results demonstrated that in addition to the fundamental stimulus frequencies, 4 Hz amplitude modulation residing in 14 Hz carrier and a broad range of carrier frequencies covering from 8 to 32 Hz modulated by 2 Hz amplitude modulation are also found in the two-dimensional frequency spectrum, which have not yet been recognized before. The envelope of the stimulus is also found to dominantly modulate the response to the incoming signal. The findings thus reveal that the electrophysiological response to amplitude-modulated stimuli is more complex than could be revealed by, for example, Fourier analysis. This highlights the dynamics of neural processes in the visual system.
Maternal and early postnatal immune activation produce sex-specific effects on autism-like behaviors and neuroimmune function in mice
Authors: Carlezon William A. , Kim Woori , Missig Galen , Finger Beate C. , Landino Samantha M. , Alexander Abigail J. , Mokler Emery L. , Robbins James O. , Li Yan , Bolshakov Vadim Y. , McDougle Christopher J. , Kim Kwang-Soo 
Published: November 2019

AbstractIncreasing evidence suggests a role for inflammation in neuropsychiatric conditions including autism spectrum disorder (ASD), a neurodevelopmental syndrome with higher prevalence in males than females. Here we examined the effects of early-life immune system activation (EIA)—comprising regimens of prenatal, early postnatal, or combined (“two-hit”) immune activation—on the core behavioral features of ASD (decreased social interaction, increased repetitive behavior, and aberrant communication) in C57BL/6J mice. We treated timed-pregnant mice with polyinosinic:polycytidylic acid (Poly I:C) on gestational day 12.5 to produce maternal immune activation (MIA). Some offspring also received lipopolysaccharide (LPS) on postnatal day 9 to produce postnatal immune activation (PIA). EIA produced disruptions in social behavior and increases in repetitive behaviors that were larger in males than in females. Ultrasonic vocalizations (USVs) were altered in both sexes. Molecular studies revealed that EIA also produced prominent sex-specific changes in inflammation-related gene expression in the brain. Whereas both sexes showed increases in pro-inflammatory factors, as reflected by levels of mRNA and protein, expression of anti-inflammatory factors was decreased in males but increased in females. Our findings demonstrate that EIA can produce sex-specific behavioral effects and immune responses in the brain, and identify molecular processes that may contribute to resilience in females.
Deep-UV excitation fluorescence microscopy for detection of lymph node metastasis using deep neural network
Authors: Matsumoto Tatsuya , Niioka Hirohiko , Kumamoto Yasuaki , Sato Junya , Inamori Osamu , Nakao Ryuta , Harada Yoshinori , Konishi Eiichi , Otsuji Eigo , Tanaka Hideo , Miyake Jun , Takamatsu Tetsuro 
Published: November 2019

AbstractDeep-UV (DUV) excitation fluorescence microscopy has potential to provide rapid diagnosis with simple technique comparing to conventional histopathology based on hematoxylin and eosin (H&E) staining. We established a fluorescent staining protocol for DUV excitation fluorescence imaging that has enabled clear discrimination of nucleoplasm, nucleolus, and cytoplasm. Fluorescence images of metastasis-positive/-negative lymph nodes of gastric cancer patients were used for patch-based training with a deep neural network (DNN) based on Inception-v3 architecture. The performance on small patches of the fluorescence images was comparable with that of H&E images. Gradient-weighted class activation mapping analysis revealed the areas where the trained model identified metastatic lesions in the images containing cancer cells. We extended the method to large-size image analysis enabling accurate detection of metastatic lesions. We discuss usefulness of DUV excitation fluorescence imaging with the aid of DNN analysis, which is promising for assisting pathologists in assessment of lymph node metastasis.
Hydrothermal Synthesize of HF-Free MIL-100(Fe) for Isoniazid-Drug Delivery
Authors: Simon Meta A. , Anggraeni Erlina , Soetaredjo Felycia Edi , Santoso Shella Permasari , Irawaty Wenny , Thanh Truong Chi , Hartono Sandy Budi , Yuliana Maria , Ismadji Suryadi 
Published: November 2019

AbstractSustainable development of drug delivery materials with good biocompatibility and controlled-release is a popular topic among researchers. In this research study, we demonstrated the potential of the metal-organic framework, that is MIL-100(Fe), as a drug delivery platform for isoniazid (INH). The MIL-100(Fe) was prepared by using the hydrofluoric acid-free hydrothermal method. Several physical measurements were conducted to characterize the MIL-100(Fe), including x-ray diffraction (XRD), scanning electron microscopy (SEM), nitrogen sorption, and thermal-gravimetric (TG). The synthesized MIL-100(Fe) has octahedron-shaped particles with superior properties, that is large surface area (1456.10 m2/g) and pore volume (1.25 cm3/g). The drug loading rate and capacity were determined by means of adsorption kinetic and isotherm. The studied INH@MIL-100(Fe) adsorption system kinetics follow the pseudo-first-order model, while the isotherm system follows the Langmuir model with the maximum adsorption capacity of 128.5 mg/g at 30 °C. MIL-100(Fe) shows adequate biocompatibility, also exhibits a reasonable and controlled drug release kinetics. The results obtained show that MIL-100 (Fe) can be a good choice of drug delivery platform among other available platforms.
Late recurrence of breast cancer is associated with pro-cancerous immune microenvironment in the primary tumor
Authors: Takeshita Takashi , Yan Li , Asaoka Mariko , Rashid Omar , Takabe Kazuaki 
Published: November 2019

AbstractThe fact that 20–40% of all breast cancer (BC) patients develop recurrence when 5 year survival is 90% strongly suggests that late recurrence, i.e. more than 5 years after diagnosis, is the remaining challenge to decrease the absolute number of BC deaths. Better understanding late recurrence is an essential first step to address this issue. We hypothesized that primary tumors with a distinctive tumor immune microenvironment will develop late recurrence. Accordingly, we evaluated the relationship between the timing of cancer recurrence, clinical factors, gene expression profiles, and immune status utilizing two published large cohorts. 308 primary BCs in TCGA were analyzed and categorized as: recurrence ≤2 years (Early, n = 49), between 2–5 years (Mid, n = 54), recurrence >5 years (Late, n = 20), and no recurrence >5 years (Survivors, n = 185). 1,727 primary BCs in METABRIC were analyzed and categorized similarly: Early, n = 170; distant (D), n = 19; local (L), Mid, n = 213; D, n = 21; L, Late, n = 199; D, n = 57, L, and Survivors, n = 1048. Utilizing pre-ranked GSEA, we showed that primary tumors with Survivors were associated with anti-cancer signaling such as INF-α/-γ response and TNF-α signaling, compared with all recurrence groups in pre-ranked GSEA. Furtherrmore, we found that host defense immunity (leukocyte fraction, lymphocyte infiltration, and macrophage fractions) was decreased in primary tumors with Late recurrence compared with Survivors. Utilizing the CIBERSORT algorithm, we showed anti-cancer lymphocytes, memory CD4+ T cells and γδT cells, were significantly lower, and pro-cancerous regulatory T cells were significantly higher in Late tumors compared with Survivors. In agreement, cytolytic activity score that assesses immune cell cytolytic activity was significantly lower in Late compared with Survivors. We demonstrated that not only host defense immunity, but also pro-cancerous immune cells and immune cell cytolytic activity in primary BC was associated with late recurrence.
Rab5-mediated endosome formation is regulated at the trans-Golgi network
Authors: Nagano Makoto , Toshima Junko Y. , Siekhaus Daria Elisabeth , Toshima Jiro 
Published: November 2019

AbstractEarly endosomes, also called sorting endosomes, are known to mature into late endosomes via the Rab5-mediated endolysosomal trafficking pathway. Thus, early endosome existence is thought to be maintained by the continual fusion of transport vesicles from the plasma membrane and the trans-Golgi network (TGN). Here we show instead that endocytosis is dispensable and post-Golgi vesicle transport is crucial for the formation of endosomes and the subsequent endolysosomal traffic regulated by yeast Rab5 Vps21p. Fittingly, all three proteins required for endosomal nucleotide exchange on Vps21p are first recruited to the TGN before transport to the endosome, namely the GEF Vps9p and the epsin-related adaptors Ent3/5p. The TGN recruitment of these components is distinctly controlled, with Vps9p appearing to require the Arf1p GTPase, and the Rab11s, Ypt31p/32p. These results provide a different view of endosome formation and identify the TGN as a critical location for regulating progress through the endolysosomal trafficking pathway.
In situ observation of solid electrolyte interphase evolution in a lithium metal battery
Authors: Golozar Maryam , Paolella Andrea , Demers Hendrix , Bessette Stéphanie , Lagacé Marin , Bouchard Patrick , Guerfi Abdelbast , Gauvin Raynald , Zaghib Karim 
Published: November 2019

AbstractLithium metal is a favorable anode material in all-solid Li-polymer batteries because of its high energy density. However, dendrite formation on lithium metal causes safety concerns. Here we obtain images of the Li-metal anode surface during cycling using in situ scanning electron microscopy. Constructing videos from the images enables us to monitor the failure mechanism of the battery. Our results show the formation of dendrites on the edge of the anode and isles of decomposed lithium bis(trifluoromethanesulfonyl)imide on the grain boundaries. Cycling at high rates results in the opening of the grain boundaries and depletion of lithium in the vicinity of the isles. We also observe changes in the surface morphology of the polymer close to the anode edge. Extrusion of lithium from these regions could be evidence of polymer reduction due to a local increase in temperature and thermal runaway assisting in dendrite formation.
Impact of naturally occurring serine/cysteine variations on the structure and function of Pseudomonas metallothioneins
Authors: Habjanič Jelena , Chesnov Serge , Zerbe Oliver , Freisinger Eva 
Published: November 2019

Abstract
Metallothioneins (MTs), small cysteine-rich metal-binding proteins, support the viability of organisms under normal physiological conditions and help them to respond to different environmental stressors. Upon metal coordination (e.g. ZnII, CdII, CuI) they form characteristic polynuclear metal–thiolate clusters that are known for their high thermodynamic stability and kinetic lability. However, despite numerous studies, it is still not understood how MTs modulate their metal-binding properties. Pseudomonas MTs are an emerging subclass of bacterial MTs, distinct for their high number of His residues and for several unique features such as an intrinsically disordered long C-terminal tail and multiple variations in the number and nature of coordinating amino acids. These variations might provide the bacteria with a functional advantage derived from evolutionary adaptation to heterogeneous environments. Nearly 90% of the known Pseudomonas MT sequences feature a central YCC̲xxC motif, that is altered to YCS̲xxC in the rest. We demonstrate that the additional Cys residue serves as a coordinating ligand without influencing the metal-binding capacity, the overall metal-binding stability or the structure. However, the additional ligand changes intra-cluster dynamics and, as a consequence, modulates metal transfer reactions that could be functionally advantageous in vivo.
MiRNA-574-3p inhibits cell progression by directly targeting CCND2 in colorectal cancer
Authors: Li Wen-Cui , Wu Yan-Qiong , Gao Bo , Wang Chao-Yun , Zhang Juan-Juan 
Published: November 2019

Abstract
Colorectal cancer (CRC) remains the candidate for one of the typical types of malignant tumors of in gastrointestinal tract all around the world, which leads to tremendous death and ranks as the top leading death of cancer. Recently, microRNAs have emerged as double-edged sword in numerous cancers. This investigation aims to discuss the regulative role of microRNA-574-3p (miR-574-3p), elucidating its molecular mechanism and clinical significance in CRC. Herein, it revealed to us that miR-574-3p was lowly expressed in CRC tissues in comparison with the matched paracarcinoma tissues. In addition, transfection of SW480 and HT29 cells with miR-574-3p mimics prohibited the post-transcriptional expression of Cyclin D2 (CCND2), which then significantly blocked cell growth and cell migration, yet triggered cell apoptosis. Also, dual-luciferase reporter assays proved the role of CCND2 as the targeted gene for miR-574-3p. miR-574-3p overexpression prohibited the activity of CCND2 in SW480 and HT29 cells. Silencing of CCND2 in SW480 and HT29 CRC cell lines leading to reduced cell proliferative and migrative rates, and enhanced apoptotic rate. The suppressive effects of elevation of miR-574-3p on the proliferation of the human CRC cells and promotive effects on cell apoptosis by targeting CCND2 were further illustrated in the in vitro studies. Thus, we hypothesize that miR-574-3p may be served as a prospective therapeutic candidate for CRC.
Oxidized cholesterol species as signaling molecules in the brain: diabetes and Alzheimer’s disease
Authors: Weigel Thaddeus K. , Kulas Joshua A. , Ferris Heather A. 
Published: November 2019

AbstractType 2 diabetes is associated with adverse central nervous system effects, including a doubled risk for Alzheimer’s disease (AD) and increased risk of cognitive impairment, but the mechanisms connecting diabetes to cognitive decline and dementia are unknown. One possible link between these diseases may be the associated alterations to cholesterol oxidation and metabolism in the brain. We will survey evidence demonstrating alterations to oxysterols in the brain in AD and diabetes and how these oxysterols could contribute to pathology, as well as identifying research questions that have not yet been addressed to allow for a fuller understanding of the role of oxysterols in AD and diabetes.
“Mosaic Pattern” Foreign Bodies in Computed Tomography of the Head: A Specific Sign to Detect Tempered Glass-Related Head Injury
Authors: Faheem Mohd. , Kumar Raj , Jaiswal Manish , Ansari Mohammad Ahmed , Saba Noor us 
Published: November 2019

AbstractA 40-year-old male patient presented to us with a history of road traffic accident, followed by loss of consciousness and vomiting. Noncontrast computed tomography (NCCT) scan revealed frontal bone defect along with multiple “mosaic pattern” homogenously hyperdense foreign bodies of nearly similar size in the right frontoparietal region within the extradural space. Debridement craniectomy was done, and multiple pieces of glass were retrieved. The extremely unique radiologic finding and probably first in the English literature prompted us to report this interesting case. Unfortunately, the patient died of myocardial infarction 3 days after the injury. Further, this new “mosaic pattern” radiologic finding on NCCT of the head may help in determining the mechanism of injury due to tempered glass-related head trauma. Window glass may not be always safe as it is thought by commuters.