bluuebunny/crossref_metadata_2025_split huggingface dataset:
Caribbean cyclone activity: an annually-resolved Common Era record
Authors: Schmitt Dominik , Gischler Eberhard , Anselmetti Flavio S. , Vogel Hendrik 
Published: July 2020

AbstractTropical cyclones (TC) represent a substantial threat to life and property for Caribbean and adjacent populations. The prospective increase of TC magnitudes, expressed in the 15th chapter of the IPCC AR5 report, entails a rising probability of ecological and social disasters, which were tragically exemplified by several severe Caribbean TC strikes during the past 20 years. Modern IPCC-grade climate models, however, still lack the required spatial and temporal resolution to accurately consider the underlying boundary conditions that modulate long-time TC patterns beyond the Instrumental Era. It is thus necessary to provide a synoptic mechanistic understanding regarding the origin of such long-time patterns, in order to predict reliable changes of TC magnitude and frequency under future climate scenarios. Caribbean TC records are still rare and often lack the necessary continuity and resolution to overcome these limitations. Here, we report on an annually-resolved sedimentary archive from the bottom of the Great Blue Hole (Lighthouse Reef, Belize). The TC record encompasses 1885 years and extends all existing site-specific TC archives both in terms of resolution and duration. We identified a likely connection between long-term TC patterns and climate phenomena responses to Common Era climate variations and offer a conceptual and comparative view considering several involved tropospheric and oceanographic control mechanisms such as the El-Niño-Southern-Oscillation, the North Atlantic Oscillation and the Atlantic Multidecadal Oscillation. These basin-scaled climate modes exercise internal control on TC activity by modulating the thermodynamic environment (sea-surface temperature and vertical wind shear stress dynamics) for enhanced/suppressed TC formation both on millennial (primary) and multi-decadal (secondary) time scales. We interpret the beginning of the Medieval Warm Period (MWP) as an important time interval of the Common Era record and suspect that the southward migration of the intertropical convergence zone (ITCZ) caused, in combination with extensive hydro-climate changes, a shift in the tropical Atlantic TC regime. The TC activity in the south-western Caribbean changed in general from a stable and less active stage (100–900 CE) to a more active and variable state (1,100 CE-modern).
Dysregulation of HULC promotes contrast-induced nephropathy (CIN) via regulating signaling pathway of miRNA-512 and prostaglandin E1 (PGE1)
Authors: Zhang Liang , Li Pan , Zhang Bi-li , Yu Man-li , Xu Rong-liang , Wu Hong , Chen Shao-ping 
Published: July 2020

AbstractIt has been shown that contrast-induced nephropathy (CIN) can be attenuated by the administration of PGE1. As an enzyme responsible for the production of PGE1, PTGS1 was confirmed in this study as a miR-512 target. Meanwhile, HULC has been identified as a competing endogenous RNA of miR-512. Therefore, in this study, we tested the diagnostic value of HULC and miR-512 in subjects with or without CIN. In addition, we evaluated the regulatory relationship among HULC, miR-512, PTGS1 and PGE1 in vitro. We enrolled 320 patients with coronary heart disease and divided them into a CIN group and a non-CIN group. Subsequently, we detected the differential expression of miR-512, HULC and PGE1 in the two groups. We also used a dual luciferase reporter assay to evaluate the regulatory relationship among HULC, miR-512, PTGS1 and PGE1 in THP-1 cells. In patients with CIN, the expression levels of HULC and PGE1 were lower, but the expression level of miR-512 was higher. MiR-512 could directly bind to and negatively regulate the expression of PTGS1 and HULC. The expression of HULC was positively correlated with the expression of PTGS1 and PGE1, while negatively correlated with the expression of miR-512. The findings of this study demonstrated that deregulation of lncRNA-HULC/miR-512/PTGS1/PGE1 might be involved in the pathogenesis of CIN.
Differential expression of Na+/K+/Cl− cotransporter 1 in neurons and glial cells within the superficial spinal dorsal horn of rodents
Authors: Javdani Fariba , Hegedűs Krisztina , Miranda Camila Oliveira , Hegyi Zoltán , Holló Krisztina , Antal Miklós 
Published: July 2020

AbstractAlthough convincing experimental evidence indicates that Na+/K+/Cl− cotransporter 1 (NKCC1) is involved in spinal nociceptive information processing and in the generation of hyperalgesia and allodynia in chronic pain states, the cellular distribution of NKCC1 in the superficial spinal dorsal horn is still poorly understood. Because this important piece of knowledge is missing, the effect of NKCC1 on pain processing is still open to conflicting interpretations. In this study, to provide the missing experimental data, we investigated the cellular distribution of NKCC1 in the superficial spinal dorsal horn by immunohistochemical methods. We demonstrated for the first time that almost all spinal axon terminals of peptidergic nociceptive primary afferents express NKCC1. In contrast, virtually all spinal axon terminals of nonpeptidergic nociceptive primary afferents were negative for NKCC1. Data on the colocalization of NKCC1 with axonal and glial markers indicated that it is almost exclusively expressed by axon terminals and glial cells in laminae I–IIo. In lamina IIi, however, we observed a strong immunostaining for NKCC1 also in the dendrites and cell bodies of PV-containing inhibitory neurons and a weak staining in PKCγ-containing excitatory neurons. Our results facilitate further thinking about the role of NKCC1 in spinal pain processing.
Validation of genome-wide associated variants for Kawasaki disease in a Taiwanese case–control sample
Authors: Chen Ming-Ren , Chang Tzu-Yang , Chiu Nan-Chang , Chi Hsin , Yang Kuender D. , Chang Lung , Huang Daniel Tsung-Ning , Huang Fu-Yuan , Lien Ya-Ping , Lin Wen-Shan , Lin Chiung-Ling , Chang Luan-Yin , Lee Yann-Jinn 
Published: July 2020

AbstractKawasaki disease (KD) is an acute febrile systemic vasculitis of unknown etiology that affects infants and young children. Considerable evidence supports the hypothesis that there is a genetic basis for KD susceptibility. Genome-wide association studies (GWAS) have identified several genetic variants associated with KD. This study aims to replicate three novel KD-associated single nucleotide polymorphisms (SNPs), identified by GWAS in Japanese, in a Taiwanese population. Associations between these SNPs and development of coronary artery lesions (CALs) were also investigated. The rs2254546 A/G, rs2857151 A/G, and rs4813003 C/T SNPs were genotyped in 681 children with KD and 563 ethnically-matched healthy controls using TaqMan Assay or DNA sequencing. We found rs2254546 and rs4813003 SNPs were significantly associated with KD (G allele, odds ratio [OR] = 1.54, P = 1.0 × 10–5; C allele, OR = 1.32, P = 8.1 × 10–4). However, no evidence for associations with CAL development was observed. Our study successfully validates associations of the rs2254546 and rs4813003 SNPs with KD in a Taiwanese population. Further functional studies of the SNPs are important in understanding the pathogenesis of KD.
Ultra-stretchable hydrogels with hierarchical hydrogen bonds
Authors: You Yujing , Yang Jian , Zheng Qiang , Wu Ningkun , Lv Zhongda , Jiang Zhiqiang 
Published: July 2020

AbstractHydrogels are attractive for applications in intelligent soft materials and flexible electronics. Herein, we report a new hydrogel with a hierarchical hydrogen bond system consisting of (1) weak hydrogen bonds between N,N-dimethylacrylamides (DMAA) and acrylic acids (AAc) and (2) strong multiple hydrogen bonds between 2-ureido-4[1H]-pyrimidinone units. By optimizing the ratios of DMAA and AAc and the balance of weak and strong hydrogen bonds, the hydrogels have unique properties. The transparent hydrogels have tunable Young’s modulus (70–1,250 kPa) and are highly stretchable (up to 4,340% strain), tough (fracture energies of 10.8 kJ/m2, matching natural rubber) and insensitive to notches when it is highly stretched (λ = 19.6).
Assembly formation of minor dihydrosphingomyelin in sphingomyelin-rich ordered membrane domains
Authors: Kinoshita Masanao , Kyo Takumi , Matsumori Nobuaki 
Published: July 2020

AbstractThe lipidome of mammalian cells not only contain sphingomyelin (SM) but also, as a minor component, dihydrosphongomyelin (DHSM), in which the double bond at C4–C5 in the sphingosine base is reduced to a single-bond linkage. It has been indicated that DHSM forms ordered domains more effectively than SM due to its greater potential to induce intermolecular hydrogen bonds. However, direct information on partition and dynamic behaviors of DHSM in raft-like liquid-ordered (Lo) and non-raft-like liquid-disordered (Ld) phase-segregated membranes has been lacking. In the present study, we prepared fluorescent derivatives of DHSM and compared their behaviors to those of fluorescent SM and phosphatidylcholine (PC) derivatives. Fluorescence microscopy showed that DHSM is more preferentially localized to the Lo domains in the Lo/Ld phase-segregated giant unilamellar vesicles than SM and PC. Most importantly, diffusion coefficient measurements indicated that DHSM molecules form DHSM-condensed assembly inside the SM-rich Lo domain of the SM/dioleoylphosphatidylcholine/cholesterol system even when DHSM accounts for 1–3.3 mol% of total lipids. Such heterogeneous distribution of DHSM in the SM-rich Lo domains was further confirmed by inter-lipid FRET experiments. This study provides new insights into the biological functions and significance of minor component DHSM in lipid rafts.
Inhibition of indole production increases the activity of quinolone antibiotics against E. coli persisters
Authors: Zarkan Ashraf , Matuszewska Marta , Trigg Stephen B. , Zhang Meng , Belgami Daaniyah , Croft Cameron , Liu Junyan , El-Ouisi Sawssen , Greenhalgh Jack , Duboff James S. , Rahman Taufiq , Summers David K. 
Published: July 2020

AbstractPersisters are a sub-population of genetically sensitive bacteria that survive antibiotic treatment by entering a dormant state. The emergence of persisters from dormancy after antibiotic withdrawal leads to recurrent infection. Indole is an aromatic molecule with diverse signalling roles, including a role in persister formation. Here we demonstrate that indole stimulates the formation ofEscherichia colipersisters against quinolone antibiotics which target the GyrA subunit of DNA gyrase. However, indole has no effect on the formation ofE. colipersisters against an aminocoumarin, novobiocin, which targets the GyrB subunit of DNA gyrase. Two modes of indole signalling have been described: persistent and pulse. The latter refers to the brief but intense elevation of intracellular indole during stationary phase entry. We show that the stimulation of quinolone persisters is due to indole pulse, rather than persistent, signalling. In silico docking of indole on DNA gyrase predicts that indole docks perfectly to the ATP binding site of the GyrB subunit. We propose that the inhibition of indole production offers a potential route to enhance the activity of quinolones againstE. colipersisters.
Individual versus team heart rate variability responsiveness analyses in a national soccer team during training camps
Authors: Muñoz-López Alejandro , Naranjo-Orellana José 
Published: July 2020

AbstractHeart rate variability (HRV) analyses can be performed using group or individual changes. Individual changes could be of potential interest during training camps for national soccer teams. The purpose of this study was to compare whether analysis of individual daily HRV could detect changes in cardiac autonomic responses during training camps for national soccer teams. During two different training camps, 34 professional soccer players were monitored daily over 9 days, using heart rate monitors. Players were divided into First Eleven (those who participated in the main squad) or Reserves. Daily HRV was individually analyzed using a day-to-day method or a baseline (days prior to first match) method, using the smallest worthwhile change and the typical error in the estimate to establish a trivial (random change) zone. Group changes were also analyzed using an ANOVA one-way repeated measures test. Players’ responsiveness was classified as High-, Low- or Non-response depending on individual changes. Both analyses showed substantial daily individual changes after playing a soccer match, regardless of the group. However, group changes showed that only First Eleven players had significant changes after playing a soccer match. In conclusion, individual daily HRV analyses are useful in detecting individual changes in professional soccer players.
Characterization of extended-spectrum-β-lactamase producing Klebsiella pneumoniae phage KP1801 and evaluation of therapeutic efficacy in vitro and in vivo
Authors: Wintachai Phitchayapak , Naknaen Ampapan , Thammaphet Jirapath , Pomwised Rattanaruji , Phaonakrop Narumon , Roytrakul Sittiruk , Smith Duncan R. 
Published: July 2020

AbstractExtended spectrum β lactamase-producing Klebsiellapneumoniae (ESBL-KP) is being reported with high morbidity and mortality rates and is considered as the highest priority for new antimicrobial strategies. To develop an alternative antimicrobial agent, phage KP1801 with broad lytic activity was isolated. The genome of phage KP1801 was double stranded DNA of 49,835 base pairs, with a GC content of 50.26%. There were 75 putative open reading frames. Phage KP1801 was classified as being in the order Caudovirales, belonging to the Siphoviridae family. About 323 proteins were detected by shotgun proteome analysis. The phage inhibited biofilm formation and reduced pre-formed biofilm in a dose dependent manner. Scanning electron microscopic studies demonstrated a membrane damage of bacterial cells treated with phage, resulting in cell death. Prophylactic and therapeutic efficacies of the phage were evaluated in Galleriamellonella. Administration of ESBL-KP infection with phage significantly improved the survival of G.mellonella. The number of intracellular bacteria in larvae showed a significant decrease compared with untreated control while the number of phage increased. These studies suggested that phage KP1801 has the potential for development as an alternative for antibiotics and biocontrol agents against ESBL-KP infection.
Experimental demonstration of broadband solar absorption beyond the lambertian limit in certain thin silicon photonic crystals
Authors: Hsieh Mei-Li , Kaiser Alex , Bhattacharya Sayak , John Sajeev , Lin Shawn-Yu 
Published: July 2020

AbstractThe tantalizing possibility of 31% solar-to-electric power conversion efficiency in thin film crystalline silicon solar cell architectures relies essentially on solar absorption well beyond the Lambertian light trapping limit (Bhattacharya and John in Nat Sci Rep 9:12482, 2019). Up to now, no solar cell architecture has exhibited above-Lambertian solar absorption, integrated over the broad solar spectrum. In this work, we experimentally demonstrate two types of photonic crystal (PhC) solar cells architectures that exceed Lambertian light absorption, integrated over the entire 300–1,200 nm wavelength band. These measurements confirm theoretically predicted wave-interference-based optical resonances associated with long lifetime, slow-light modes and parallel-to-interface refraction. These phenomena are beyond the realm of ray optics. Using two types of 10-μm thick PhC’s, first an Inverted Pyramid PhC with lattice constant a = 2,500 nm and second a Teepee PhC with a = 1,200 nm, we observe solar absorption well beyond the Lambertian limit over λ = 950–1,200 nm. Our absorption measurements correspond to the maximum-achievable-photocurrent-density (MAPD), under AM1.5G illumination at 4-degree incident angle, 41.29 and 41.52 mA/cm2 for the Inverted Pyramid and Teepee PhC, respectively, in agreement with wave-optics, numerical simulations. Both of these values exceed the MAPD (= 39.63 mA/cm2) corresponding to the Lambertian limit for a 10-μm thick silicon for solar absorption over the 300–1,200 nm band.
The mechanisms of ameliorating effect of a green tea polyphenol on diabetic nephropathy based on diacylglycerol kinase α
Authors: Hayashi Daiki , Wang Liuqing , Ueda Shuji , Yamanoue Minoru , Ashida Hitoshi , Shirai Yasuhito 
Published: July 2020

AbstractSignificant efforts have been made to ameliorate diabetic nephropathy (DN) by inhibiting protein kinase C. However, these efforts have not been successful in human trials, suggesting that novel therapeutic strategies are required. Thus far, it has been reported that green tea polyphenol epigallocatechin gallate (EGCg) improved albuminuria in DN in a human trial. Our previous study revealed that activation of diacylglycerol kinase α (DGKα) plays a crucial role in the amelioration of DN and that EGCg activates DGKα. Here, we investigated whether and how DGKα contributes to the amelioration of DN upon stimulation by EGCg by using streptozotocin-induced type 1 diabetic model mice. Our results revealed that EGCg ameliorated albuminuria in DN through DGKα in vivo, and methylated EGCg, which has higher absorption in the plasma improved albuminuria in DN effectively. Additionally, we showed that c-Src mediated EGCg-induced DGKα translocation and colocalized with the 67 kDa laminin receptor, which is an EGCg receptor. Furthermore, EGCg attenuated the loss of podocytes in DN by preventing a decrease in focal adhesion under high glucose conditions. Our results indicate that the DGKα pathway is an attractive therapeutic target and that activating this pathway is a novel strategy for treating DN.
Integrating density and fertilizer management to optimize the accumulation, remobilization, and distribution of biomass and nutrients in summer maize
Authors: Ren Hao , Cheng Yi , Li Rongfa , Yang Qinglong , Liu Peng , Dong Shuting , Zhang Jiwang , Zhao Bin 
Published: July 2020

AbstractImproved the utilization of fertilizer while maintaining the increased of grain yield was the focus of Chinese researchers. Nutrient uptake, distribution, and remobilization are important factors affecting the fertilizer utilization and grain yield of maize. This study aimed to provide a theoretical and practical basis for science-based, high-yielding, and high-efficiency cultivation practices by examining differences in biomass and nutrient uptake, distribution, and remobilization characteristics under three cultivation patterns. We set 12 treatments as follows: super high-yielding cultivation pattern (SH), optimized nutrient management cultivation pattern (ONM), local farmer's practice cultivation pattern (FP), and a series of nutrient omission plots, which excluded nitrogen (N), phosphorus (P), or potassium (K) from the three patterns. The results demonstrated that SH and ONM increased the yield and actual harvested ears by 35.4, 20.7 and by 20.2, 17.6%, respectively. Compared with the FP, SH and ONM increased biomass, N, P, and K accumulation at silking (R1 stage) by 24.4, 31.2, 39.4, and 34.8%, and by 21.7, 22.2, 31.7, and 34.8%, respectively. SH and ONM significantly increased biomass and nutrient distribution to the grains. ONM significantly increased N use efficiency. P and K use efficiency under the ONM pattern was significantly higher than under SH, but was lower than under the FP pattern over two years. This research demonstrates that ONM may significantly reduce fertilizer rates, effectively improve the nutrient remobilization efficiency and uptake at post-silking without negatively affecting grain yield, thereby increasing N use efficiency.
Reward and punisher experience alter rodent decision-making in a judgement bias task
Authors: Neville Vikki , King Jessica , Gilchrist Iain D. , Dayan Peter , Paul Elizabeth S. , Mendl Michael 
Published: July 2020

AbstractThe influence of affective states on decision-making is likely to be complex. Negative states resulting from experience of punishing events have been hypothesised to generate enhanced expectations of future punishment and ‘pessimistic’/risk-averse decisions. However, they may also influence how decision-outcomes are valued. Such influences may further depend on whether decisions at hand are germane to the rewards or punishers that induced the affective state in the first place. Here we attempt to dissect these influences by presenting either many or few rewards or punishers of different types (sucrose vs air-puff; 50 kHz vs 22 kHz ultrasonic vocalisations) to rats, and investigating their subsequent decisions in a judgement bias task that employed sucrose and air-puff as decision outcomes. Rats that received many sucrose pellets prior to testing were more risk-averse than those receiving many air-puffs. Ultrasonic vocalisations did not alter decision-making. Computational analysis revealed a higher weighting of punishers relative to rewards (in agreement with findings from a separate behavioural task) and a bias towards the risk-averse response following pre-test sucrose compared to pre-test air-puff. Thus, in this study reward and punisher manipulation of affective state appeared to alter decision-making by influencing both expectation and valuation of decision-outcomes in a domain-specific way.
QTL mapping and candidate gene analysis of cadmium accumulation in polished rice by genome-wide association study
Authors: Pan Xiaowu , Li Yongchao , Liu Wenqiang , Liu Sanxiong , Min Jun , Xiong Haibo , Dong Zheng , Duan Yonghong , Yu Yaying , Li Xiaoxiang 
Published: July 2020

AbstractCadmium (Cd) accumulation in rice is a serious threat to food safety and human health. Breeding rice varieties with low Cd accumulation is one of the most effective approaches to reducing health risks from Cd-polluted rice. However, the genetic basis of Cd accumulation in grains, especially in indica rice varieties, has not been fully elucidated. The evaluation of Cd-accumulation capacity was conducted among 338 diverse rice accessions grown in Cd-contaminated soils with different Cd contents. Thirteen rice lines with relatively low Cd accumulation, including six indica rice lines, were identified. Then, 35 QTLs significantly associated with Cd accumulation were identified through sequencing-based SNP discovery and a genome-wide association study (GWAS) in the two experimental years, and only qCd8-1 was detected in both years. Among of them, nine QTLs were co-localized with identified genes or QTLs. A novel QTL, qCd1-3, with the lowest P value was selected for further LD decay analysis and candidate gene prediction. We found differential expression of OsABCB24 between high-Cd-accumulative and low-Cd-accumulative accessions, suggesting it may be a candidate gene for qCd1-3 associated with low Cd accumulation. These results may be helpful for further exploiting novel functional genes related to Cd accumulation and developing rice variety with low Cd accumulation through marker-assisted breeding.