bluuebunny/crossref_metadata_2025_split huggingface dataset:
Phylogeography of Kyasanur Forest Disease virus in India (1957–2017) reveals evolution and spread in the Western Ghats region
Authors: Yadav Pragya D. , Patil Savita , Jadhav Santoshkumar M. , Nyayanit Dimpal A. , Kumar Vimal , Jain Shilpi , Sampath Jagadish , Mourya Devendra T. , Cherian Sarah S. 
Published: February 2020

AbstractThe Kyasanur Forest Disease (KFD) has become a major public health problem in the State of Karnataka, India where the disease was first identified and in Tamil Nadu, Maharashtra, Kerala, and Goa covering the Western Ghats region of India. The incidence of positive cases and distribution of the Kyasanur Forest Disease virus (KFDV) in different geographical regions raises the need to understand the evolution and spatiotemporal transmission dynamics. Phylogeography analysis based on 48 whole genomes (46 from this study) and additionally 28 E-gene sequences of KFDV isolated from different regions spanning the period 1957–2017 was thus undertaken. The mean evolutionary rates based the E-gene was marginally higher than that based on the whole genomes. A subgroup of KFDV strains (2006–2017) differing from the early Karnataka strains (1957–1972) by ~2.76% in their whole genomes and representing spread to different geographical areas diverged around 1980. Dispersal from Karnataka to Goa and Maharashtra was indicated. Maharashtra represented a new source for transmission of KFDV since ~2013. Significant evidence of adaptive evolution at site 123 A/T located in the vicinity of the envelope protein dimer interface may have functional implications. The findings indicate the need to curtail the spread of KFDV by surveillance measures and improved vaccination strategies.
Effect of graphene oxide on modifying polyethersulfone membrane performance and its application in wastewater treatment
Authors: Marjani Azam , Nakhjiri Ali Taghvaie , Adimi Maryam , Jirandehi Hassan Fathinejad , Shirazian Saeed 
Published: February 2020

AbstractIn the present paper, Graphene Oxide (GO) particles were prepared via Hummer method, and used in synthesis of composite membranes. Polyethersulfone (PES) nanocomposite membranes were synthesized via wet phase inversion technique, and using water as non-solvent. The membrane morphology was investigated using scanning electron microscopy (SEM). Change in the membrane surface hydrophilicity after modification was studied using contact angle measurements. The performance of fabricated PES nanocomposite membranes was measured by evaluating pure water flux, salt rejection, dye retention and heavy metals removal. The results indicated that by increasing the filler percentage up to 5 wt.%, the contact angle between the water droplet and the membrane surface was decreased and the droplet was more dispersed on the membrane surface which implies higher hydrophilicity of the prepared nanocomposite membranes. Moreover, the experimental results corroborated that addition of GO to the membrane significantly improved the pure water flux, salt rejection and heavy metals removal, and can be used as a novel methodology for preparation of high performance membranes in water treatment.
Urodynamics mixed type urinary incontinence with advanced pelvic organ prolapse, management and outcomes
Authors: Lo Tsia-Shu , Uy-Patrimonio Ma. Clarissa , Kao Chuan Chi , Chua Sandy , Huang Ting-Xuan , Wu Ming-Ping 
Published: February 2020

AbstractPatients with pelvic organ prolapse (POP) often have accompanying lower urinary tract symptoms. Symptoms such as stress urinary incontinence(SUI-UD) and detrusor overactivty(DO) would co-exist in a number of patients. Management entails relieving the obstructive element. To determine the clinical outcome of patients with urodynamics mixed type urinary incontinence(MUI-U) after vaginal pelvic reconstructive surgery(PRS), a retrospective study was conducted. MUI-U was defined as having urodynamic findings of both of DO/DOI (derusor overactivity incontinence) and SUI-UD. Main outcome measures: Objective cure- absence of involuntary detrusor contraction on filling cystometry and no demonstrable leakage of urine during increased abdominal pressure; Subjective cure- assessment index score of <1 on UDI-6 question #2 and #3. Of the 82 patients evaluated, 14 underwent vaginal PRS with concomitant mid-urethral sling(MUS) insertion while 68 had vaginal PRS alone. Pre-operatively, 49(60%) patients had stage III and 33(40%) had stage IV prolapse. Post-operatively, 1-year data shows an objective cure of 56% (46/82) and subjective cure of 54% (44/82). MUI-U was significantly improved. Improvement of SUIUD and results of the 1-hour pad test were more pronounced in patients with concomitant MUS insertion. Ergo, vaginal PRS cures symptoms of MUI-U in >50% of patients and concomitant MUS can be offered to SUI predominant MUI.
Selection and evaluation of appropriate reference genes for RT-qPCR based expression analysis in Candida tropicalis following azole treatment
Authors: Paul Saikat , Singh Shreya , Chakrabarti Arunaloke , Rudramurthy Shivaprakash M. , Ghosh Anup K 
Published: February 2020

AbstractCandida tropicalisarises as one of the predominant non-Candida albicans Candida (NCAC) species causing invasive candidiasis in Asian countries. A rise in reports ofC. tropicaliswith a parallel increase in fluconazole resistance has also been observed. The genes and underlying pathways associated with azole antifungal resistance inC. tropicalisis still not properly understood. The RT-qPCR is the most promising approach for expression analysis of target genes to understand the mechanisms of resistance. The reliability and reproducibility of this technique depend on the selection of suitable reference genes for the normalization in expression study. The present study investigated the expression stability levels of ten genes includingACT1,EF1,GAPDH,PGK1,RDN5.8,RDN18,RDN28,SDHA,TUB1, andUBC13for their suitability in fluconazole treated/untreatedC. tropicalis. The stability levels of these genes were examined by the ∆∆CT, ΔCT, Pfaffl methods and five independent software including hkgFinder, geNorm, NormFinder, BestKeeper, and RefFinder software. We report, theEF1andACT1were the most stable reference genes for normalization and can be used for the gene expression analysis inC. tropicalis. To the best of our knowledge, our study is the first to select and validate the reference genes inC. tropicalisfor RT-qPCR based expression analysis.
Forward flight stability in a drone-fly
Authors: Zhu Hao Jie , Meng Xue Guang , Sun Mao 
Published: February 2020

AbstractPrevious studies on forward flight stability in insects are for low to medium flight-speeds. In the present work, we investigated the stability problem for the full range of flight speeds (0–8.6 m/s) of a drone-fly. Our results show the following: The longitudinal derivatives due to the lateral motion are approximately 3 orders of magnitude smaller than the other longitudinal derivatives. Thus, we can decouple these two motions of the insect, as commonly done for a conventional airplane. At hovering flight, the motion of the dronefly is weakly unstable owing to two unstable natural modes of motion, a longitudinal one and a lateral one. At low (1.6 m/s) and medium (3.1 m/s) flight-speeds, the unstable modes become even weaker and the flight is approximately neutral. At high flight-speeds (4.6 m/s, 6.9 m/s and 8.6 m/s), the flight becomes more and more unstable due to an unstable longitudinal mode. At the highest flight speed, 8.6 m/s, the instability is so strong that the time constant representing the growth rate of the instability (disturbance-doubling time) is only 10.1 ms, which is close to the sensory reaction time of a fly (approximately 11 ms). This indicates that strong instability may play a role in limiting the flight speed of the insect.
Self-reported sleep disturbance in Crohn’s disease is not confirmed by objective sleep measures
Authors: Iskandar Heba N. , Linan Emily E. , Patel Ami , Moore Renee , Lasanajak Yi , Gyawali C. Prakash , Sayuk Gregory S. , Ciorba Matthew A. 
Published: February 2020

AbstractSleep disturbance and fatigue are commonly reported among patients with Crohn’s disease (CD). In this prospective study, we aimed to define sleep quality in CD patients at various disease activity states and compare to healthy controls using objective and subjective measures. A prospective observational cohort study of CD patients seen at a tertiary academic inflammatory bowel diseases (IBD) clinic was compared to healthy volunteers. CD activity was assessed using the Harvey-Bradshaw Index (HBI). Sleep quality was assessed using the Pittsburgh Sleep Quality Index (PSQI) and Epworth Sleepiness Scale (ESS) and objectively over 1-week using actigraphy (motion-based) and morning urinary melatonin metabolite. 121 subjects (CD patients N = 61; controls N = 60) completed the study. 34 had active CD (HBI > 4). Sleep disturbance was more frequently reported by CD subjects than controls (PSQI: 57% vs. 35%, p = 0.02) and in patients with active CD versus in remission state (PSQI 75.8% vs. 33.3%, p < 0.01; ESS: 45.5% vs. 19%, p = 0.03). Sleep parameters as measured by actigraphy and urine melatonin metabolite did not vary by group. Crohn’s patients report significantly more disturbed sleep than controls. However, poor sleep was not confirmed by objective measures of sleep quality. Excessive daytime sleepiness in CD patients may be driven by factors beyond objectively measured poor sleep.
GaAs1-xBix growth on Ge: anti-phase domains, ordering, and exciton localization
Authors: Paulauskas Tadas , Pačebutas Vaidas , Geižutis Andrejus , Stanionytė Sandra , Dudutienė Evelina , Skapas Martynas , Naujokaitis Arnas , Strazdienė Viktorija , Čechavičius Bronislovas , Čaplovičová Mária , Vretenár Viliam , Jakieła Rafał , Krotkus Arūnas 
Published: February 2020

AbstractThe dilute bismide alloy GaAs1-xBix has drawn significant attention from researchers interested in its fundamental properties and the potential for infrared optoelectronics applications. To extend the study of bismides, molecular-beam heteroepitaxy of nominally 1.0 eV bandgap bismide on Ge substrates is comprehensively investigated. Analysis of atomic-resolution anti-phase domain (APD) images in the direct-epitaxy revealed a high-density of Ga vacancies and a reduced Bi content at their boundaries. This likely played a key role in the preferential dissolution of Bi atoms from the APD interiors and Bi spiking in Ge during thermal annealing. Introduction of GaAs buffer on offcut Ge largely suppressed the formation of APDs, producing high-quality bismide with single-variant CuPtB-type ordered domains as large as 200 nm. Atomic-resolution X-ray imaging showed that 2-dimensional Bi-rich (111) planes contain up to x = 9% Bi. The anomalously early onset of localization found in the temperature-dependent photoluminescence suggests enhanced interactions among Bi states, as compared to non-ordered samples. Growth of large-domain single-variant ordered GaAs1-xBix films provides new prospects for detailed analysis of the structural modulation effects and may allow to further tailor properties of this alloy for optoelectronic applications.
Sensory neurons that respond to sex and aggregation pheromones in the nymphal cockroach
Authors: Tateishi Kosuke , Nishimura Yukihiro , Sakuma Masayuki , Yokohari Fumio , Watanabe Hidehiro 
Published: February 2020

AbstractIn the common pest cockroach, Periplaneta americana, behavioural responses to the sex and aggregation pheromones change in an age-dependent manner. Nymphs are attracted by the aggregation pheromone periplanolide-E (PLD-E) but not by the sex pheromone periplanone-B (PB) in faeces. Adults display prominent behaviours to PB but not to PLD-E. Despite the significant behavioural differences depending on postembryonic developmental stages, peripheral codings of the sex and aggregation pheromones have not been studied in the nymph of any insects as far as we know. In this study, we morphologically and electrophysiologically identified antennal sensilla that respond to PB and PLD-E in nymphal cockroaches. Although nymphs lacked the sex pheromone-responsive single-walled B (sw-B) sensilla identified in adult males, we found PB-responsive sensory neurons (PB-SNs) within newly identified sw-A2 sensilla, which exhibit different shapes but have the same olfactory pores as sw-B sensilla. Interestingly, PLD-E-responsive sensory neurons (PLD-E-SNs) were also identified in the same sensillar type, but PB and PLD-E were independently detected by different SNs. Both PB-SNs and PLD-E-SNs showed high sensitivity to their respective pheromones. The hemimetabolous insect nymph has an ability to detect these pheromones, suggesting that behaviours elicited by pheromones might be established in brain centres depending on postembryonic development.
Red versus green leaves: transcriptomic comparison of foliar senescence between two Prunus cerasifera genotypes
Authors: Vangelisti Alberto , Guidi Lucia , Cavallini Andrea , Natali Lucia , Lo Piccolo Ermes , Landi Marco , Lorenzini Giacomo , Malorgio Fernando , Massai Rossano , Nali Cristina , Pellegrini Elisa , Rallo Giovanni , Remorini Damiano , Vernieri Paolo , Giordani Tommaso 
Published: February 2020

AbstractThe final stage of leaf ontogenesis is represented by senescence, a highly regulated process driven by a sequential cellular breakdown involving, as the first step, chloroplast dismantling with consequent reduction of photosynthetic efficiency. Different processes, such as pigment accumulation, could protect the vulnerable photosynthetic apparatus of senescent leaves. Although several studies have produced transcriptomic data on foliar senescence, just few works have attempted to explain differences in red and green leaves throughout ontogenesis. In this work, a transcriptomic approach was used on green and red leaves ofPrunus cerasiferato unveil molecular differences from leaf maturity to senescence. Our analysis revealed a higher gene regulation in red leaves compared to green ones, during leaf transition. Most of the observed DEGs were shared and involved in transcription factor activities, senescing processes and cell wall remodelling. Significant differences were detected in cellular functions: genes related to photosystem I and II were highly down-regulated in the green genotype, whereas transcripts involved in flavonoid biosynthesis, such asUDP glucose-flavonoid-3-O-glucosyltransferase(UFGT) were exclusively up-regulated in red leaves. In addition, cellular functions involved in stress response (glutathione-S-transferase,Pathogen-Related) and sugar metabolism, such as threethrealose-6-phosphate synthases, were activated in senescent red leaves. In conclusion, data suggests thatP. cerasiferared genotypes can regulate a set of genes and molecular mechanisms that cope with senescence, promoting more advantages during leaf ontogenesis than compared to the green ones.
Early dynamics of photosynthetic Lhcf2 and Lhcf15 transcription and mRNA stabilities in response to herbivory-related decadienal in Phaeodactylum tricornutum
Authors: Islam Shahima , Sabharwal Tanya , Wu Samantha , Bullock T. J. , Mehdy Mona C. 
Published: February 2020

AbstractAbiotic and biotic stresses widely reduce light harvesting complex (LHC) gene expression in higher plants and algae. However, control mechanisms and functions of these changes are not well understood. During herbivory, marine diatom species release oxylipins that impair grazer reproduction and serve as signaling molecules to nearby undamaged diatoms. To examine LHC mRNA regulation by oxylipin exposure, the diatom Phaeodactylum tricornutum was treated with a sublethal concentration of trans,trans-2,4-decadienal (DD) during the light cycle. Transcriptome analyses revealed extensive suppression of LHC mRNAs and a smaller set of up-regulated LHC mRNAs at 3 h. For two divergently regulated LHCF antennae family mRNAs, in vivo 4-thiouracil metabolic labeling was used to distinguish synthesis and degradation rates. Within 3 h of DD exposure, Lhcf2 mRNA levels and transcription were strongly suppressed and its mRNA half-life decreased. In contrast, Lhcf15 mRNA mainly accumulated between 3–9 h, its transcription increased and its mRNA was highly stabilized. Hence, DD-treated cells utilized transcriptional and mRNA stability control mechanisms which were likely major factors in the differing Lhcf2 and Lhcf15 expression patterns. Widespread LHC mRNA regulation and possible effects on photosynthesis may contribute to enhanced fitness in cells impacted by herbivory and other stresses.
A pilot study of alterations in oxidized angiotensinogen and antioxidants in pre-eclamptic pregnancy
Authors: Dahabiyeh Lina A. , Tooth David , Kurlak Lesia O. , Mistry Hiten D. , Pipkin Fiona Broughton , Barrett David A. 
Published: February 2020

AbstractThe oxidation status of angiotensinogen (AGT) may have a critical role in pre-eclampsia. We used a validated, quantitative, mass spectrometry-based method to measure the oxidized and total AGT levels in plasma of pre-eclamptic women (n = 17), normotensive-matched controls (n = 17), and healthy non-pregnant women (n = 10). Measurements of plasma glutathione peroxidase (GPx) activity and serum selenium concentrations were performed as markers of circulating antioxidant capacity. Higher proportions of oxidized AGT in plasma from pre-eclamptic women compared to matched normotensive pregnant controls (P = 0.006), whilst maintaining a similar total plasma AGT concentration were found. In the pre-eclamptic group, blood pressure were correlated with the proportion of oxidized AGT; no such correlation was seen in the normotensive pregnant women. Plasma GPx was inversely correlated with oxidized AGT, and there was an inverse association between serum selenium concentration and the proportion of oxidized AGT. This is the first time that oxidized AGT in human plasma has been linked directly to antioxidant status, providing a mechanism for the enhanced oxidative stress in pre-eclampsia. We now provide pathophysiological evidence that the conversion of the reduced form of AGT to its more active oxidized form is associated with inadequate antioxidant status and could indeed contribute to the hypertension of pre-eclampsia.
Predictive factors for the development of proteinuria in cancer patients treated with bevacizumab, ramucirumab, and aflibercept: a single-institution retrospective analysis
Authors: Kanbayashi Yuko , Ishikawa Takeshi , Tabuchi Yusuke , Sakaguchi Koichi , Ouchi Yoshimi , Otsuji Eigo , Takayama Koichi , Taguchi Tetsuya 
Published: February 2020

AbstractThe development of proteinuria restricts the dose of anti-angiogenic agents, thereby reducing their efficacy. Thus, this retrospective study was undertaken to identify predictive factors of the development of angiogenesis inhibitor-induced proteinuria, and to elucidate if there is a difference in the likelihood of proteinuria among anti-angiogenic agents or cancer types, to help guide future strategies to improve the safety, efficacy, and quality of life of patients receiving chemotherapy. Between April 2014 and February 2019, 124 cancer patients at our outpatient chemotherapy center who were receiving chemotherapy with bevacizumab, ramucirumab, or aflibercept were enrolled. Variables related to the development of proteinuria were extracted from the patients’ clinical records and used for regression analysis. The level of the proteinuria was evaluated based on CTCAE version 5. Multivariate ordered logistic regression analysis was performed to identify predictive factors for the development of proteinuria. The Wilcoxon/Kruskal-Wallis test was used to identify significant differences between groups. Significant factors identified included systolic blood pressure (SBP) [odds ratio (OR) = 1.031, 95% confidence interval (CI) = 1.005–1.058; P = 0.0197], number of cycles (OR = 1.049, 95% CI = 1.018–1.082; P = 0.0019), and calcium channel blocker use (OR = 2.589, 95% CI = 1.090–6.146; P = 0.0311). There was no difference among the three anti-angiogenic agents (P = 0.4969) or among cancer types (P = 0.2726) in the likelihood of proteinuria. In conclusion, SBP, number of cycles, and calcium channel blocker use were identified as significant predictors of the development of angiogenesis inhibitor-induced proteinuria. There was no difference among the three anti-angiogenic agents or among cancer types.
Hydrogen Attenuates Allergic Inflammation by Reversing Energy Metabolic Pathway Switch
Authors: Niu Yinghao , Nie Qingrong , Dong Liping , Zhang Jihua , Liu Shu Fang , Song Wei , Wang Xiaopei , Wu Guangli , Song Dongmei 
Published: February 2020

AbstractMechanisms mediating the protective effects of molecular hydrogen (H2) are not well understood. This study explored the possibility that H2 exerts its anti-inflammatory effect by modulating energy metabolic pathway switch. Activities of glycolytic and mitochondrial oxidative phosphorylation systems were assessed in asthmatic patients and in mouse model of allergic airway inflammation. The effects of hydrogen treatment on airway inflammation and on changes in activities of these two pathways were evaluated. Monocytes from asthmatic patients and lungs from ovalbumin-sensitized and challenged mice had increased lactate production and glycolytic enzyme activities (enhanced glycolysis), accompanied by decreased ATP production and mitochondrial respiratory chain complex I and III activities (suppressed mitochondrial oxidative phosphorylation), indicating an energy metabolic pathway switch. Treatment of ovalbumin-sensitized and challenged mice with hydrogen reversed the energy metabolic pathway switch, and mitigated airway inflammation. Hydrogen abrogated ovalbumin sensitization and challenge-induced upregulation of glycolytic enzymes and hypoxia-inducible factor-1α, and downregulation of mitochondrial respiratory chain complexes and peroxisome proliferator activated receptor-γ coactivator-1α. Hydrogen abrogated ovalbumin sensitization and challenge-induced sirtuins 1, 3, 5 and 6 downregulation. Our data demonstrates that allergic airway inflammation is associated with an energy metabolic pathway switch from oxidative phosphorylation to aerobic glycolysis. Hydrogen inhibits airway inflammation by reversing this switch. Hydrogen regulates energy metabolic reprogramming by acting at multiple levels in the energy metabolism regulation pathways.
TALEN-based editing of TFIIAy5 changes rice response to Xanthomonas oryzae pv. Oryzae
Authors: Han Jin , Xia Zhihui , Liu Pengcheng , Li Chunrong , Wang Yanyan , Guo Lequn , Jiang Guanghuai , Zhai Wenxue 
Published: February 2020

AbstractThe xa5 gene encodes a basal transcription factor (TFIIAγ) protein with wide spectrum resistance to bacterial blight caused by Xanthomonas oryzae pv. Oryzae (Xoo) in rice. It was only found in a few rice ecotypes, and the recessive characteristics limited its application in breeding. Here, we employed a TALEN-based technique to edit its dominant allelic TFIIAγ5 and obtained many mutant TFIIAγ5 genes. Most of them reduced rice susceptibility to varying degrees when the plants were challenged with the Xoo. In particular, the knocked-out TFIIAγ5 can reduce the rice susceptibility significantly, although it cannot reach the xa5-mediated resistance level, indicating TFIIAγ5 is a major component involved in disease susceptibility. In addition, the mutant encoding the protein with deletion of the 32nd amino acid or amino acid insertion between 32nd and 33rd site confers rice with the similar resistance to that of the knocked-out TFIIAγ5. Thus, the amino acids around 32nd site are also the important action sites of TFIIAγ5 besides the 39th amino acid previously reported. Moreover, the integration of xa5 into TFIIAγ5-knockout plants conferred them with a similar resistance as IRBB5, the rice variety containing the homozygous xa5 gene. Thus, TFIIAγ5 was not simply regarded as a resistant or a susceptible locus, as the substitution of amino acids might shift its functions.