bluuebunny/crossref_metadata_2025_split huggingface dataset:
Differences in signal contrast and camouflage among different colour variations of a stomatopod crustacean, Neogonodactylus oerstedii
Authors: Franklin Amanda M. , Marshall Justin , Feinstein Adina D. , Bok Michael J. , Byrd Anya D. , Lewis Sara M. 
Published: January 2020

AbstractAnimal colouration is often a trade-off between background matching for camouflage from predators, and conspicuousness for communication with con- or heterospecifics. Stomatopods are marine crustaceans known to use colour signals during courtship and contests, while their overall body colouration may provide camouflage. However, we have little understanding of how stomatopods perceive these signals in their environment or whether overall body coloration does provide camouflage from predators. Neogonodactylus oerstedii assess meral spot colour during contests, and meral spot colour varies depending on local habitat. By calculating quantum catch for N. oerstedii’s 12 photoreceptors associated with chromatic vision, we found that variation in meral spot total reflectance does not function to increase signal contrast in the local habitat. Neogonodactylus oerstedii also show between-habitat variation in dorsal body colouration. We used visual models to predict a trichromatic fish predator’s perception of these colour variations. Our results suggest that sandy and green stomatopods are camouflaged from a typical fish predator in rubble fields and seagrass beds, respectively. To our knowledge, this is the first study to investigate signal contrast and camouflage in a stomatopod. These results provide new insight into the function and evolution of colouration in a species with a complex visual system.
A Clinically Relevant Functional Model of Type-2 Cardio-Renal Syndrome with Paraventricular Changes consequent to Chronic Ischaemic Heart Failure
Authors: Harrison Joanne Clare , Smart Scott Duncan George , Besley Emma Maria Hinemoa , Kelly Jessica Renee , Read Morgayn Iona , Yao Yimin , Sammut Ivan Andrew 
Published: January 2020

AbstractCardiorenal syndrome, de novo renal pathology arising secondary to cardiac insufficiency, is clinically recognised but poorly characterised. This study establishes and characterises a valid model representative of Type 2 cardiorenal syndrome. Extensive permanent left ventricular infarction, induced by ligation of the left anterior descending coronary artery in Lewis rats, was confirmed by plasma cardiac troponin I, histology and cardiac haemodynamics. Renal function and morphology was assessed 90-days post-ligation when heart failure had developed. The involvement of the paraventricular nucleus was investigated using markers of inflammation, apoptosis, reactive oxygen species and of angiotensin II involvement. An extensive left ventricular infarct was confirmed following coronary artery ligation, resulting in increased left ventricular weight and compromised left ventricular diastolic function and developed pressure. Glomerular filtration was significantly decreased, fractional excretion of sodium and caspase activities were increased and basement membrane thickening, indicating glomerulosclerosis, was evident. Interestingly, angiotensin II receptor I expression and reactive oxygen species levels in the hypothalamic paraventricular nucleus remained significantly increased at 90-days post-coronary artery ligation, suggesting that these hypothalamic changes may represent a novel, valuable pharmacological target. This model provides conclusive morphological, biochemical and functional evidence of renal injury consequent to heart failure, truly representative of Type-2 cardiorenal syndrome.
Enhanced photocatalytic and electrochemical performance of TiO2-Fe2O3 nanocomposite: Its applications in dye decolorization and as supercapacitors
Authors: Kumar M. R. Anil , Abebe Buzuayehu , Nagaswarupa H. P. , Murthy H. C. Ananda , Ravikumar C. R. , Sabir Fedlu Kedir 
Published: January 2020

AbstractThis work reveals a green combustion route for the synthesis of TiO2, Fe2O3 and TiO2-Fe2O3 nanocomposites as photocatalysts for decolorization of Titan Yellow (TY) and Methyl Orange (MO) dyes at room temperature in aqueous solution concentration of 20 ppm under UV-light irradiation. We observed that the TiO2-Fe2O3 nanocomposite shows superior photocatalytic activity for TY dye compared to pure TiO2 and Fe2O3. Rate constant (k) values of TiO2, Fe2O3 and TiO2–Fe2O3 for TY and MO are 0.0194, 0.0159, 0.04396 and 0.00931, 0.00772 0.0119 kmin−1 respectively. The surface area and pore volume of TiO2-Fe2O3 nanocomposite were found to be 71.56 m2/g and 0.076 cm3/g, respectively as revealed by BET studies. From the Barrett–Joyner–Halenda (BJH) plot, the mean pore diameter of TiO2-Fe2O3 nanoparticles was found to be 2.43 nm. Further, the TiO2-Fe2O3 nanocomposite showed good electrochemical behavior as an electrode material for supercapacitors when compared to pure TiO2 and Fe2O3 nanoparticles resulted in stable electrochemical performance with nearly 100% coulombic efficiency at a scan rate of 10 mV/s for 1000 cycles. Interestingly, the novelty of this work is that the designed supercapacitors showed stable electrochemical performance even at 1000th cycle, which might be useful for rechargeable supercapacitor applications. The electrochemical properties of the nanocomposites were compared by the data obtained by cyclic voltammograms, charge-discharge tests and electrochemical impedance spectroscopic studies. These results demonstrated that the TiO2-Fe2O3 nanocomposite showed stable performance compared to TiO2 and Fe2O3 nanoparticles at current density of 5 Ag−1.
The Potential Risk Assessment of Phenoxyethanol with a Versatile Model System
Authors: Akgündüz Mehmet Çağrı , Çavuşoğlu Kültiğin , Yalçın Emine 
Published: January 2020

AbstractIn this study, the toxic effects of phenoxyethanol (Phy-Et), which is widely used in cosmetic industry, has been investigated with Allium test by means of physiological, cytogenetic, anatomical and biochemical parameters. To determine the changes in physiological reactions weight gain, relative injury rate, germination percentage and root length were investigated. Malondialdehyde, superoxide dismutase, glutathion and catalase levels were analyzed as biochemical parameters for determining the presence of oxidative stress. Mitotic index, micronucleus and chromosomal abnormality frequencies were studied as cytogenetic evaluation and the anatomical changes in root tip cells were investigated by cross sections. Changes in surface polarity and wettability were investigated by taking contact angle measurements of pressed root preparations. The mechanism of toxicity has been tried to be explained by these contact angles and this is the first study using contact angle measurements in toxicity tests. Consequently, exposure to Phy-Et resulted in a decrease in all measured physiological parameters and in mitotic index. In contrast, significant increases in the micronucleus and chromosomal abnormality frequencies were observed and the most significant toxic effect was found in 10 mM Phy-Et treated group. Phy-Et application induced oxidative damage and caused a significant increase in malondialdehyde level and a decrease in glutathione level compared to control group. Also a response occured against oxidative damage in superoxide dismutase and catalase activity and the activities increased in 2.5 mM and 5 mM Phy-Et treated groups and decreased in 10 mM Phy-Et treated groups. Furthermore, Phy-Et treatment resulted in some anatomical damages and changes such as necrosis, cell deformation and thickening of the cortex cell wall in root tip meristem cells of A. cepa. In the contact angle measurements taken against water, it was found that the wettability and hydrophilicity of the root preparations treated with Phy-Et were reduced, and this was the explanation of the growth abnormalities associated with water uptake. As a result, it was found that Phy-Et application caused toxic effects on many viability parameters and A. cepa test material was a reliable biomarker in determining these effects.
Modified creatinine index and risk for long-term infection-related mortality in hemodialysis patients: ten-year outcomes of the Q-Cohort Study
Authors: Arase Hokuto , Yamada Shunsuke , Hiyamuta Hiroto , Taniguchi Masatomo , Tokumoto Masanori , Tsuruya Kazuhiko , Nakano Toshiaki , Kitazono Takanari 
Published: January 2020

AbstractModified creatinine (Cr) index, calculated by age, sex, pre-dialysis serum Cr concentration, and Kt/V for urea, is an indicator of skeletal muscle mass in hemodialysis (HD) patients. It remains unknown whether the modified Cr index predicts infection-related mortality in this population. We investigated the association between the modified Cr index and infection-related mortality. A total of 3046 patients registered in the Q-Cohort Study, a multicenter, observational study of HD patients, were analyzed. Associations between sex-specific quartiles (Q1–Q4) of the modified Cr index and the risk for infection-related mortality were analyzed by Cox proportional hazard model. During a median follow-up of 8.8 years, 387 patients died of infection. The estimated risk for infection-related mortality was significantly higher in the lower quartiles (Q1, Q2, and Q3) than in the highest quartile (Q4) as the reference group (hazard ratios and 95% confidence intervals [CI]: Q1, 2.89 [1.70–5.06], Q2, 2.76 [1.72–4.62], and Q3, 1.79 [1.12–2.99]). The hazard ratio (95% CI) for a 1 mg/kg/day decrease in the modified Cr index was 1.18 (1.09–1.27, P < 0.01) for infection-related mortality. In conclusion, a lower modified Cr index is associated with an increased risk for long-term infection-related mortality in the HD population.
Genetic interaction screen for severe neurodevelopmental disorders reveals a functional link between Ube3a and Mef2 in Drosophila melanogaster
Authors: Straub Jonas , Gregor Anne , Sauerer Tatjana , Fliedner Anna , Distel Laila , Suchy Christine , Ekici Arif B. , Ferrazzi Fulvia , Zweier Christiane 
Published: January 2020

AbstractNeurodevelopmental disorders (NDDs) are clinically and genetically extremely heterogeneous with shared phenotypes often associated with genes from the same networks. Mutations in TCF4, MEF2C, UBE3A, ZEB2 or ATRX cause phenotypically overlapping, syndromic forms of NDDs with severe intellectual disability, epilepsy and microcephaly. To characterize potential functional links between these genes/proteins, we screened for genetic interactions in Drosophila melanogaster. We induced ubiquitous or tissue specific knockdown or overexpression of each single orthologous gene (Da, Mef2, Ube3a, Zfh1, XNP) and in pairwise combinations. Subsequently, we assessed parameters such as lethality, wing and eye morphology, neuromuscular junction morphology, bang sensitivity and climbing behaviour in comparison between single and pairwise dosage manipulations. We found most stringent evidence for genetic interaction between Ube3a and Mef2 as simultaneous dosage manipulation in different tissues including glia, wing and eye resulted in multiple phenotype modifications. We subsequently found evidence for physical interaction between UBE3A and MEF2C also in human cells. Systematic pairwise assessment of the Drosophila orthologues of five genes implicated in clinically overlapping, severe NDDs and subsequent confirmation in a human cell line revealed interactions between UBE3A/Ube3a and MEF2C/Mef2, thus contributing to the characterization of the underlying molecular commonalities.
Nitrogen Fertilization Restructured Spatial Patterns of Soil Organic Carbon and Total Nitrogen in Switchgrass and Gamagrass Croplands in Tennessee USA
Authors: Li Jianwei , Jian Siyang , Lane Chad S. , Guo Chunlan , Lu YueHan , Deng Qi , Mayes Melanie A. , Dzantor Kudjo E. , Hui Dafeng 
Published: January 2020

AbstractNitrogen (N) fertilizers can potentially alter spatial distribution of soil organic carbon (SOC) and total nitrogen (TN) concentrations in croplands such as switchgrass (SG: Panicum virgatum L.) and gamagrass (GG: Tripsacum dactyloides L.), but it remains unclear whether these effects are the same between crops and under different rates of fertilization. 13C and 15N are two important proxy measures of soil biogeochemistry, but they were rarely examined as to their spatial distributions in soil. Based on a three-year long fertilization experiment in Middle Tennessee, USA, the top mineral horizon soils (0–15 cm) were collected using a spatially explicit design within two 15-m2 plots under three fertilization treatments in SG and GG croplands. A total of 288 samples were collected based on 12 plots and 24 samples in each plot. The fertilization treatments were no N input (NN), low N input (LN: 84 kg N ha−1 in urea) and high N input (HN: 168 kg N ha−1 in urea). The SOC, TN, SOC/TN (C: N), δ13C and δ15N were quantified and their within-plot variations and spatial distributions were achieved via descriptive and geostatistical methods. Results showed that SG generally displayed 10~120% higher plot-level variations in all variables than GG, and the plot-level variations were 20~77% higher in NN plots than LN and HN plots in SG but they were comparable in unfertilized and fertilized plots in GG. Relative to NN, LN and HN showed more significant surface trends and spatial structures in SOC and TN in both croplands, and the fertilization effect appeared more pronounced in SG. Spatial patterns in C: N, δ13C and δ15N were comparable among different fertilization treatments in both croplands. The descending within-plot variations were also identified among variables (SOC > TN > δ15N > C: N > δ13C). This study demonstrated that N fertilizations generally reduced the plot-level variance and simultaneously re-established spatial structures of SOC and TN in bioenergy croplands, which little varied with fertilization rate but was more responsive in switchgrass cropland.
Agro-Climato-Edaphic Zonation of Nigeria for a Cassava Cultivar using GIS-Based Analysis of Data from 1961 to 2017
Authors: Akinwumiju Akinola S. , Adelodun Adedeji A. , Orimoogunje Oluwagbenga I. 
Published: January 2020

AbstractTo investigate the optimal cultivation conditions for cassava cultivar (TMS98/0505) in Nigeria, we employed agro-ecological zoning to delineate the cultivated lands. Using GIS-based multi-criteria analysis, we researched the influence of some meteorological and soil parameters on the clone cultivation. From the multiple-parameter climato-edaphic zoning map, an average yield of 26 t ha−1 was estimated. The dry Rainforest and southern Guinea Savanna account for 80% of the favorable zones. However, with irrigation, the cultivar would yield optimally in the northern marginal zones. Further, the significant climatic parameters are sunshine hour (t = 3.292, α = 0.0064) and rainfall (t = 2.100, α = 0.0575). Thus, the potentials of a location for cassava cultivation in Nigeria largely depend on the soil conditions, sunshine hour, and rainfall. Generally, the cassava yield correlates strongly (+0.88) with the suitability map. Considering future climate variability based on the annual rainfall data, we projected an average annual rainfall range of 565–3,193 mm between 2070 and 2099. Likewise, the projected range of daily temperature for 2046–2100 is 24.57–31.94 °C. Consequently, with currently allotted farmlands, Nigeria can double her current cassava production through soil fertility enhancement and irrigation.
No ontogenetic shift in the realised trophic niche but in Batesian mimicry in an ant-eating spider
Authors: Pekár S. , Petráková Dušátková L. , Haddad C. R. 
Published: January 2020

AbstractIn predators an ontogenetic trophic shift includes change from small to large prey of several different taxa. In myrmecophagous predators that are also mimics of ants, the ontogenetic trophic shift should be accompanied by a parallel mimetic change. Our aim was to test whether ant-eating jumping spider,Mexcala elegans, is myrmecomorphic throughout their ontogenetic development, and whether there is an ontogenetic shift in realised trophic niche and their mimetic models. We performed field observations on the association ofMexcalawith ant species and investigated the natural prey of the ontogenetic classes by means of molecular methods. Then we measured the mimetic similarity of ontogenetic morphs to putative mimetic models. We foundMexcalais an inaccurate mimic of ants both in the juvenile and adult stages. During ontogenesis it shifts mimetic models. The mimetic similarity was rather superficial, so an average bird predator should distinguish spiders from ants based on colouration. The realised trophic niche was narrow, composed mainly of ants of different species. There was no significant difference in the prey composition between ontogenetic stages. Females were more stenophagous than juveniles. We conclude thatMexcalais an ant-eating specialist that reduces its prey spectrum and shifts ant models during ontogenesis.
Machine Learning and Network Analyses Reveal Disease Subtypes of Pancreatic Cancer and their Molecular Characteristics
Authors: Sinkala Musalula , Mulder Nicola , Martin Darren 
Published: January 2020

AbstractGiven that the biological processes governing the oncogenesis of pancreatic cancers could present useful therapeutic targets, there is a pressing need to molecularly distinguish between different clinically relevant pancreatic cancer subtypes. To address this challenge, we used targeted proteomics and other molecular data compiled by The Cancer Genome Atlas to reveal that pancreatic tumours can be broadly segregated into two distinct subtypes. Besides being associated with substantially different clinical outcomes, tumours belonging to each of these subtypes also display notable differences in diverse signalling pathways and biological processes. At the proteome level, we show that tumours belonging to the less severe subtype are characterised by aberrant mTOR signalling, whereas those belonging to the more severe subtype are characterised by disruptions in SMAD and cell cycle-related processes. We use machine learning algorithms to define sets of proteins, mRNAs, miRNAs and DNA methylation patterns that could serve as biomarkers to accurately differentiate between the two pancreatic cancer subtypes. Lastly, we confirm the biological relevance of the identified biomarkers by showing that these can be used together with pattern-recognition algorithms to accurately infer the drug sensitivity of pancreatic cancer cell lines. Our study shows that integrative profiling of multiple data types enables a biological and clinical representation of pancreatic cancer that is comprehensive enough to provide a foundation for future therapeutic strategies.
Annexin A8 regulates Wnt signaling to maintain the phenotypic plasticity of retinal pigment epithelial cells
Authors: Lueck Katharina , Carr Amanda-Jayne F. , Yu Lu , Greenwood John , Moss Stephen E. 
Published: January 2020

AbstractWnt signalling mediates complex cell-cellinteractions during development and proliferation. Annexin A8 (AnxA8), a calcium-dependent phospholipid-binding protein, and canonical Wnt signalling mechanisms have both been implicated in retinal pigment epithelial (RPE) cell differentiation. The aim here was to examine the possibility of cross-talk between AnxA8 and Wnt signalling, as both are down-regulated upon fenretinide (FR)-mediated RPE transdifferentiation. AnxA8 suppression in RPE cells via siRNA or administration of FR induced neuronal-like cell transdifferentiation and reduced expression of Wnt-related genes, as measured by real-time PCR and western blotting. AnxA8 gene expression, on the other hand, remained unaltered upon manipulating Wnt signalling, suggesting Wnt-related genes to be downstream effectors of AnxA8. Co-immunoprecipitation revealed an interaction between AnxA8 and β-catenin, which was reduced in the presence of activated TGF-β1. TGF-β1 signalling also reversed the AnxA8 loss-induced cell morphology changes, and induced β-catenin translocation and GSK-3β phosphorylation in the absence of AnxA8. Ectopic over-expression of AnxA8 led to an increase in active β-catenin and GSK-3β phosphorylation. These data demonstrate an important role for AnxA8 as a regulator of Wnt signalling and a determinant of RPE phenotype, with implications for regenerative medicine approaches that utilise stem cell-derived RPE cells to treat conditions such as age-related macular degeneration.
Serum gamma-glutamyltransferase activity and Parkinson’s disease risk in men and women
Authors: Yoo Dallah , Kim Ryul , Jung Yu Jin , Han Kyungdo , Shin Cheol Min , Lee Jee-Young 
Published: January 2020

AbstractWe evaluated serum gamma-glutamyltransferase (GGT) and the risk of Parkinson’s disease (PD). Using data from the National Health Insurance Service (NHIS) database, we constructed a cohort consisting of individuals aged above 40 years who underwent a health check-up in 2009. After excluding individuals with heavy alcohol consumption, hepatobiliary and pancreatic disorders, and a previous history of PD, each quartile group of baseline serum GGT levels was monitored for the development of PD for 7 years. Adjusted hazard ratios (HRs) for PD were estimated by Cox proportional hazard models adjusting for potential confounding variables. We additionally analyzed the possible interaction between GGT and obesity or metabolic syndrome. Among the 6,098,405 individuals who were included, PD developed in 20,895 individuals during the follow-up (0.34%, 9,512 men and 11,383 women). The top quartile of serum GGT (geometric means, 90.44 IU/L in men and 41.86 IU/L in women) was associated with a lower risk in men (adjusted HR = 0.72 (95% CI: 0.67–0.76)) and a higher risk in women (adjusted HR = 1.30 (95% CI: 1.23–1.37)) using the lower GGT quartiles as a reference. Obesity and metabolic syndrome increased PD risk in both sexes, and there was only a subadditive interaction between serum GGT and obesity in women.
Topographic Analysis of the Isthmus in Mesiobuccal and Mesial Roots of First Molars in a South Korean Population
Authors: Kang Sumi , Yu Hui-Wen , Shin Yooseok , Karabucak Bekir , Kim Sunil , Kim Euiseong 
Published: January 2020

AbstractThe purpose of this study was to evaluate the incidence and microscopic anatomy of the isthmus to provide more precise anatomical information about the mesiobuccal (MB) roots of the maxillary first molars and the mesial (M) roots of the mandibular first molars. Twenty-eight maxillary and 31 mandibular first molars were embedded, sectioned, stained, and observed at 30× magnification to evaluate the incidence and microscopic anatomy of the isthmus. The incidence of an isthmus 3 mm from the apex was 89.3% and 100% in the MB roots of the maxillary first molars and in the M roots of the mandibular first molars, respectively. The mean dentin thickness between the isthmus and the distal root surface was <1 mm at a distance of 3 mm from the apex in both types of roots. In this study, whenever two main canals were located in the MB roots of the maxillary first molars and in the M roots of the mandibular first molars, the likelihood of the presence of an isthmus increased. Therefore, clinicians should be aware of the thinnest dimensions in the distal surface of the MB roots of the maxillary first molars and the M roots of the mandibular first molars during nonsurgical and surgical root canal treatment.