bluuebunny/crossref_metadata_2025_split huggingface dataset:
Reflections on the Development of Digital Humanities
Authors: Orlandi Tito 
Published: September 2020

AbstractLecture presented to the Utrecht Conference of ADHO, 2019: my experience in the field of Humanities Computing/Digital Humanities, collocated in historical perspective, listing and briefly commenting what I have learned to be the essential theories which form our discipline. For this purpose, the fundamental disciplines are proposed, and their role in the discipline: computing theory, information and communication, formalization, algorithms and recursion; and, from humanities side, cybernetics, linguistics, semiotics, relational model, systems theory, modelization.
Founded semantics and constraint semantics of logic rules
Authors: Liu Yanhong A , Stoller Scott D 
Published: September 2020

Abstract
Logic rules and inference are fundamental in computer science and have been studied extensively. However, prior semantics of logic languages can have subtle implications and can disagree significantly, on even very simple programs, including in attempting to solve the well-known Russell’s paradox. These semantics are often non-intuitive and hard-to-understand when unrestricted negation is used in recursion. This paper describes a simple new semantics for logic rules, founded semantics, and its straightforward extension to another simple new semantics, constraint semantics, that unify the core of different prior semantics. The new semantics support unrestricted negation, as well as unrestricted existential and universal quantifications. They are uniquely expressive and intuitive by allowing assumptions about the predicates, rules and reasoning to be specified explicitly, as simple and precise binary choices. They are completely declarative and relate cleanly to prior semantics. In addition, founded semantics can be computed in linear time in the size of the ground program.
On uniform belief revision
Authors: Aravanis Theofanis 
Published: September 2020

Abstract
Rational belief-change policies are encoded in the so-called AGM revision functions, defined in the prominent work of Alchourrón, Gärdenfors and Makinson. The present article studies an interesting class of well-behaved AGM revision functions, called herein uniform-revision operators (or UR operators, for short). Each UR operator is uniquely defined by means of a single total preorder over all possible worlds, a fact that in turn entails a significantly lower representational cost, relative to an arbitrary AGM revision function, and an embedded solution to the iterated-revision problem, at no extra representational cost. Herein, we first demonstrate how weaker, more expressive—yet, more representationally expensive—types of uniform revision can be defined. Furthermore, we prove that UR operators, essentially, generalize a significant type of belief change, namely, parametrized-difference revision. Lastly, we show that they are (to some extent) relevance-sensitive, as well as that they respect the so-called principle of kinetic consistency.
Decomposing the internal faraday rotation of black hole accretion flows
Authors: Ricarte Angelo , Prather Ben S , Wong George N , Narayan Ramesh , Gammie Charles , Johnson Michael D 
Published: September 2020

ABSTRACT
Faraday rotation has been seen at millimeter wavelengths in several low-luminosity active galactic nuclei, including Event Horizon Telescope (EHT) targets M87* and Sgr A*. The observed rotation measure (RM) probes the density, magnetic field, and temperature of material integrated along the line of sight. To better understand how accretion disc conditions are reflected in the RM, we perform polarized radiative transfer calculations using a set of general relativistic magnetohydrodynamic (GRMHD) simulations appropriate for M87*. We find that in spatially resolved millimetre wavelength images on event horizon scales, the RM can vary by orders of magnitude and even flip sign. The observational consequences of this spatial structure include significant time-variability, sign-flips, and non-λ2 evolution of the polarization plane. For some models, we find that internal RM can cause significant bandwidth depolarization even across the relatively narrow fractional bandwidths observed by the EHT. We decompose the linearly polarized emission in these models based on their RM and find that emission in front of the mid-plane can exhibit orders of magnitude less Faraday rotation than emission originating from behind the mid-plane or within the photon ring. We confirm that the spatially unresolved (i.e. image integrated) RM is a poor predictor of the accretion rate, with substantial scatter stemming from time variability and inclination effects. Models can be constrained with repeated observations to characterize time variability and the degree of non-λ2 evolution of the polarization plane.
AMICO galaxy clusters in KiDS-DR3: galaxy population properties and their redshift dependence
Authors: Radovich Mario , Tortora Crescenzo , Bellagamba Fabio , Maturi Matteo , Moscardini Lauro , Puddu Emanuella , Roncarelli Mauro , Roy Nivya , Bardelli Sandro , Marulli Federico , Sereno Mauro , Getman Fedor , Napolitano Nicola R 
Published: September 2020

ABSTRACT
A catalogue of galaxy clusters was obtained in an area of 414 $\deg ^2$ up to a redshift z ∼ 0.8 from the Data Release 3 of the Kilo-Degree Survey (KiDS-DR3), using the Adaptive Matched Identifier of Clustered Objects (amico) algorithm. The catalogue and the calibration of the richness–mass relation were presented in two companion papers. Here, we describe the selection of the cluster central galaxy and the classification of blue and red cluster members, and analyse the main cluster properties, such as the red/blue fraction, cluster mass, brightness, and stellar mass of the central galaxy, and their dependence on redshift and cluster richness. We use the Illustris-TNG simulation, which represents the state-of-the-art cosmological simulation of galaxy formation, as a benchmark for the interpretation of the results. A good agreement with simulations is found at low redshifts (z ≤ 0.4), while at higher redshifts the simulations indicate a lower fraction of blue galaxies than what found in the KiDS-amico catalogue: we argue that this may be due to an underestimate of star-forming galaxies in the simulations. The selection of clusters with a larger magnitude difference between the two brightest central galaxies, which may indicate a more relaxed cluster dynamical status, improves the agreement between the observed and simulated cluster mass and stellar mass of the central galaxy. We also find that at a given cluster mass the stellar mass of blue central galaxies is lower than that of the red ones.
Correlation between optical and γ-ray flux variations in bright flat spectrum radio quasars
Authors: Rajput Bhoomika , Stalin C S , Sahayanathan S 
Published: September 2020

ABSTRACT
Blazars are known to show flux variations over a range of energies from low-energy radio to high-energy γ-rays. Cross-correlation analysis of the optical and γ-ray light curves in blazars shows that flux variations are generally correlated in both bands, however, there are exceptions. We explored this optical–GeV connection in four flat spectrum radio quasars by a systematic investigation of their long-term optical and γ-ray light curves. On analysis of the four sources, namely 3C 273, 3C 279, PKS 1510−089, and CTA 102, we noticed different behaviours between the optical and GeV flux variations. We found instances when (i) the optical and GeV flux variations are closely correlated, (ii) there are optical flares without γ-ray counterparts, and (iii) γ-ray flares without optical counterparts. To understand these diverse behaviours, we carried out broad-band spectral energy distribution (SED) modelling of the sources at different epochs using a one-zone leptonic emission model. The optical–UV emission is found to be dominated by emission from the accretion disc in the sources PKS 1510−089, CTA 102, and 3C 273, while in 3C 279, the synchrotron radiation from the jet dominates the optical–UV emission. Our SED analysis indicates that (i) correlated optical and γ-ray flux variations are caused by changes in the bulk Lorentz factor (Γ), (ii) γ-ray flares without optical counterparts are due to increase in Γ and/or the electron energy density, and (iii) an optical flare without γ-ray counterpart is due to increase in the magnetic field strength.
A spectral study of the black hole X-ray binary MAXI J1820+070 with AstroSat and NuSTAR
Authors: Chakraborty Sudip , Navale Nilam , Ratheesh Ajay , Bhattacharyya Sudip 
Published: September 2020

ABSTRACT
MAXI J1820+070 is a newly discovered transient black hole X-ray binary, which showed several spectral and temporal features. In this work, we analyse the broad-band X-ray spectra from all three simultaneously observing X-ray instruments onboard AstroSat, as well as contemporaneous X-ray spectra from NuSTAR, observed during the hard state of MAXI J1820+070 in 2018 March. Implementing a combination of multicolour disc model, relativistic blurred reflection model relxilllpcp, and a distant reflection in the form of xillvercp, we achieve reasonable and consistent fits for AstroSat and NuSTAR spectra. The best-fitting model suggests a low temperature disc (kTin ∼ 0.3 keV), iron overabundance (AFe ∼ 4–5 solar), a short lamp-post corona height (h ≲ 8Rg), and a high corona temperature (kTe ∼ 115–150 keV). Addition of a second Comptonization component leads to a significantly better fit, with the kTe of the second Comptonization component being ∼14–18 keV. Our results from independent observations with two different satellites in a similar source state indicate an inhomogeneous corona, with decreasing temperature attributed to increasing height. Besides, utilizing the broader energy coverage of AstroSat, we estimate the black hole mass to be 6.7–13.9 M⊙, consistent with independent measurements reported in the literature.
SHαDE: survey description and mass–kinematics scaling relations for dwarf galaxies
Authors: Barat Dilyar , D’Eugenio Francesco , Colless Matthew , Sweet Sarah M , Groves Brent , Cortese Luca 
Published: September 2020

ABSTRACT
The Study of H α from Dwarf Emissions (SHαDE) is a high spectral resolution (R = 13 500) H α integral field survey of 69 dwarf galaxies with stellar masses 106 &lt; M⋆ &lt; 109 M⊙. The survey used FLAMES on the ESO Very Large Telescope. SHαDE is designed to study the kinematics and stellar populations of dwarf galaxies using consistent methods applied to massive galaxies and at matching level of detail, connecting these mass ranges in an unbiased way. In this paper, we set out the science goals of SHαDE, describe the sample properties, outline the data reduction, and analysis processes. We investigate the log M⋆–log S0.5 mass–kinematics scaling relation, which has previously shown potential for combining galaxies of all morphologies in a single scaling relation. We extend the scaling relation from massive galaxies to dwarf galaxies, demonstrating this relation is linear down to a stellar mass of M⋆ ∼ 108.6 M⊙. Below this limit, the kinematics of galaxies inside one effective radius appears to be dominated by the internal velocity dispersion limit of the H α-emitting gas, giving a bend in the log M⋆–log S0.5 relation. Replacing stellar mass with total baryonic mass using gas mass estimate reduces the severity but does not remove the linearity limit of the scaling relation. An extrapolation to estimate the galaxies’ dark matter halo masses, yields a log Mh–log S0.5 scaling relation that is free of any bend, has reduced curvature over the whole mass range, and brings galaxies of all masses and morphologies on to the virial relation.
Observational signatures of disc and jet misalignment in images of accreting black holes
Authors: Chatterjee K , Younsi Z , Liska M , Tchekhovskoy A , Markoff S B , Yoon D , van Eijnatten D , Hesp C , Ingram A , van der Klis M B M 
Published: September 2020

ABSTRACT
Black hole (BH) accretion is one of nature’s most efficient energy extraction processes. When gas falls in, a significant fraction of its gravitational binding energy is either converted into radiation or flows outwards in the form of BH-driven jets and disc-driven winds. Recently, the Event Horizon Telescope (EHT), an Earth-sized submillimetre radio interferometer, captured the first images of M87’s BH. These images were analysed and interpreted using general relativistic magnetohydrodynamics (GRMHD) models of accretion discs with rotation axes aligned with the BH spin axis. However, since infalling gas is often insensitive to the BH spin direction, misalignment between accretion disc and BH spin may be a common occurrence in nature. In this work, we use the general relativistic radiative transfer code bhoss to calculate the first synthetic radio images of (highly) tilted disc/jet models generated by our GPU-accelerated GRMHD code h-amr . While the tilt does not have a noticeable effect on the system dynamics beyond a few tens of gravitational radii from the BH, the warping of the disc and jet can imprint observable signatures in EHT images on smaller scales. Comparing the images from our GRMHD models to the 43 and 230 GHz EHT images of M87, we find that M87 may feature a tilted disc/jet system. Further, tilted discs and jets display significant time variability in the 230 GHz flux that can be further tested by longer-duration EHT observations of M87.
Young stellar cluster dilution near supermassive black holes: the impact of vector resonant relaxation on neighbour separation
Authors: Giral Martínez Juan , Fouvry Jean-Baptiste , Pichon Christophe 
Published: September 2020

ABSTRACT
We investigate the rate of orbital orientation dilution of young stellar clusters in the vicinity of supermassive black holes. Within the framework of vector resonant relaxation, we predict the time evolution of the two-point correlation function of the stellar orbital plane orientations as a function of their initial angular separation and diversity in orbital parameters (semimajor axis, eccentricity). As expected, the larger the spread in initial orientations and orbital parameters, the more efficient the dilution of a given set of co-eval stars, with a characteristic time-scale set up by the coherence time of the background potential fluctuations. A Markovian prescription that matches numerical simulations allows us to efficiently probe the underlying kinematic properties of the unresolved nucleus when requesting consistency with a given dilution efficiency, imposed by the observed stellar disc within the 1 arcsec of Sgr A*. As a proof of concept, we compute maps of constant dilution times as a function of the semimajor axis cusp index and fraction of intermediate-mass black holes in the old background stellar cluster. This computation suggests that vector resonant relaxation should prove useful in this context since it impacts orientations on time-scales comparable to the stars’ age.
Evaluating the Performance of Malaria Genetics for Inferring Changes in Transmission Intensity Using Transmission Modeling
Authors: Watson Oliver J , Okell Lucy C , Hellewell Joel , Slater Hannah C , Unwin H Juliette T , Omedo Irene , Bejon Philip , Snow Robert W , Noor Abdisalan M , Rockett Kirk , Hubbart Christina , Nankabirwa Joaniter I , Greenhouse Bryan , Chang Hsiao-Han , Ghani Azra C , Verity Robert 
Published: September 2020

Abstract
Substantial progress has been made globally to control malaria, however there is a growing need for innovative new tools to ensure continued progress. One approach is to harness genetic sequencing and accompanying methodological approaches as have been used in the control of other infectious diseases. However, to utilize these methodologies for malaria, we first need to extend the methods to capture the complex interactions between parasites, human and vector hosts, and environment, which all impact the level of genetic diversity and relatedness of malaria parasites. We develop an individual-based transmission model to simulate malaria parasite genetics parameterized using estimated relationships between complexity of infection and age from five regions in Uganda and Kenya. We predict that cotransmission and superinfection contribute equally to within-host parasite genetic diversity at 11.5% PCR prevalence, above which superinfections dominate. Finally, we characterize the predictive power of six metrics of parasite genetics for detecting changes in transmission intensity, before grouping them in an ensemble statistical model. The model predicted malaria prevalence with a mean absolute error of 0.055. Different assumptions about the availability of sample metadata were considered, with the most accurate predictions of malaria prevalence made when the clinical status and age of sampled individuals is known. Parasite genetics may provide a novel surveillance tool for estimating the prevalence of malaria in areas in which prevalence surveys are not feasible. However, the findings presented here reinforce the need for patient metadata to be recorded and made available within all future attempts to use parasite genetics for surveillance.
Ecological Load and Balancing Selection in Circumboreal Barnacles
Authors: Nunez Joaquin C B , Rong Stephen , Damian-Serrano Alejandro , Burley John T , Elyanow Rebecca G , Ferranti David A , Neil Kimberly B , Glenner Henrik , Rosenblad Magnus Alm , Blomberg Anders , Johannesson Kerstin , Rand David M 
Published: September 2020

AbstractAcorn barnacle adults experience environmental heterogeneity at various spatial scales of their circumboreal habitat, raising the question of how adaptation to high environmental variability is maintained in the face of strong juvenile dispersal and mortality. Here, we show that 4% of genes in the barnacle genome experience balancing selection across the entire range of the species. Many of these genes harbor mutations maintained across 2 My of evolution between the Pacific and Atlantic oceans. These genes are involved in ion regulation, pain reception, and heat tolerance, functions which are essential in highly variable ecosystems. The data also reveal complex population structure within and between basins, driven by the trans-Arctic interchange and the last glaciation. Divergence between Atlantic and Pacific populations is high, foreshadowing the onset of allopatric speciation, and suggesting that balancing selection is strong enough to maintain functional variation for millions of years in the face of complex demography.
Change in ankle–brachial index and mortality among individuals with chronic kidney disease: findings from the Chronic Renal Insufficiency Cohort Study
Authors: Dorans Kirsten S , He Hua , Chen Jing , Dobre Mirela , Go Alan S , Hamm L Lee , Jaar Bernard G , Mehta Rupal C , Rahman Mahboob , Ricardo Ana C , Rosas Sylvia E , Srivastava Anand , He Jiang ,   the CRIC Study Investigators
Published: September 2020

Abstract

Background
Patients with chronic kidney disease (CKD) have an increased risk of peripheral arterial disease (PAD). The ankle–brachial index (ABI), a noninvasive measure of PAD, is a predictor of adverse events among individuals with CKD. In general populations, changes in ABI have been associated with mortality, but this association is not well understood among patients with CKD.

Methods
We conducted a prospective study of 2920 participants in the Chronic Renal Insufficiency Cohort Study without lower extremity revascularization or amputation at baseline and with at least one follow-up ABI measurement (taken at annual visits) during the first 4 years of follow-up. The ABI was obtained by the standard protocol.

Results
In Cox proportional hazard regression analyses, we found a U-shaped association of average annual change in ABI with all-cause mortality. After adjusting for baseline ABI and other covariates, compared with participants with an average annual change in ABI of 0–&lt;0.02, individuals with an average annual change in ABI &lt;−0.04 or ≥0.04 had multivariable-adjusted hazard ratios (HRs) of 1.81 [95% confidence interval (CI) 1.34–2.44) and 1.42 (95% CI 1.12–1.82) for all-cause mortality, respectively. Compared with the cumulative average ABI of 1.0–&lt;1.4, multivariable-adjusted HRs for those with a cumulative average ABI of &lt;0.9, 0.9–&lt;1.0 and ≥1.4 were 1.93 (95% CI 1.42–2.61), 1.20 (0.90–1.62) and 1.31 (0.94–1.82), respectively.

Conclusions
This study indicates both larger decreases and increases in average annual changes in ABI (&gt;0.04/year) were associated with higher mortality risk. Monitoring changes in ABI over time may facilitate risk stratification for mortality among individuals with CKD.
Intracranial Myxoid Mesenchymal Tumor/Myxoid Subtype Angiomatous Fibrous Histiocytoma: Diagnostic and Prognostic Challenges
Authors: Domingo Ricardo A , Vivas-Buitrago Tito , Jentoft Mark , Quinones-Hinojosa Alfredo 
Published: September 2020

ABSTRACT

BACKGROUND AND IMPORTANCE
In the setting of intracranial neoplasms, EWSR1-cAMP Response Element-Binding Protein (CREB) transcription factor family fusions have been described in myxoid mesenchymal tumors, extremely rare entities with a close histopathologic and immunologic resemblance to myxoid subtype angiomatoid fibrous histiocytomas (AFH). Controversy exists on whether these central nervous system lesions are a subtype of myxoid AFH or a completely separate entity, which entitles a distinct clinical behavior and, consequently, a different approach to management. Upon review of the literature, only 14 cases of intracranial tumors harboring an EWSR1-CREB family fusion were identified, with only 3 cases presenting in middle-aged adults, none of which reported an EWSR1-CREM fusion mutation. Significant variability in reported radiographic and histopathological characteristics, as well as in clinical outcomes, was noted. Their similarity with other soft tissue tumors, added to the scarce information on its clinical behavior, represents a great diagnostic and therapeutic challenge to the treating physician.

CLINICAL PRESENTATION
We present a rare case of EWSR1-CREM mutated intracranial myxoid mesenchymal tumor/myxoid subtype AFH presenting as persistent headaches in a 36-yr-old woman with radiographic evidence of rapid growth and extensive vasogenic edema, for which she underwent surgical resection.

CONCLUSION
This represents a unique case of EWSR1-CREM mutated intracranial myxoid mesenchymal tumor presenting in adulthood, with evidence of aggressive behavior.
Masterpiece Cakeshop and the Foundations of Free Speech and Toleration
Authors: Tedesco Jeremy D 
Published: September 2020

Abstract
What do Masterpiece Cakeshop, Ltd v Colorado Civil Rights Commission, other leading cases from the USA, Canada, and the UK, and Teresa Bejan’s concept of ‘mere civility’, teach us about free speech and toleration? This article seeks to answer that question and suggest a path forward that allows people with deep disagreements about fundamental social and moral issues to live peaceably together despite their differences. This article defends two primary claims: First, ‘mere civility’ is complimentary to a broader legal argument for protecting the freedom of all members of a society to espouse and live out their views within the context of the public square and marketplace; and Second, compelling speech (or agreement) under the guise of civility endangers liberty and genuine equality. When freedom is properly protected, ‘mere civility’ is the natural result, while attempts to achieve something more than ‘mere civility’ invariably jeopardize freedom.