bluuebunny/crossref_metadata_2025_split huggingface dataset:
Mesoscopic cortical network reorganization during recovery of optic nerve injury in GCaMP6s mice
Authors: Groleau Marianne , Nazari-Ahangarkolaee Mojtaba , Vanni Matthieu P. , Higgins Jacqueline L. , Vézina Bédard Anne-Sophie , Sabel Bernhard A. , Mohajerani Majid H. , Vaucher Elvire 
Published: December 2020

AbstractAs the residual vision following a traumatic optic nerve injury can spontaneously recover over time, we explored the spontaneous plasticity of cortical networks during the early post-optic nerve crush (ONC) phase. Using in vivo wide-field calcium imaging on awake Thy1-GCaMP6s mice, we characterized resting state and evoked cortical activity before, during, and 31 days after ONC. The recovery of monocular visual acuity and depth perception was evaluated in parallel. Cortical responses to an LED flash decreased in the contralateral hemisphere in the primary visual cortex and in the secondary visual areas following the ONC, but was partially rescued between 3 and 5 days post-ONC, remaining stable thereafter. The connectivity between visual and non-visual regions was disorganized after the crush, as shown by a decorrelation, but correlated activity was restored 31 days after the injury. The number of surviving retinal ganglion cells dramatically dropped and remained low. At the behavioral level, the ONC resulted in visual acuity loss on the injured side and an increase in visual acuity with the non-injured eye. In conclusion, our results show a reorganization of connectivity between visual and associative cortical areas after an ONC, which is indicative of spontaneous cortical plasticity.
Oxidation suppression of Cu in alkaline aluminophosphate glass and the effects for radiation-induced luminescence characteristics
Authors: Shiratori Daiki , Masai Hirokazu , Kato Takumi , Okada Go , Nakauchi Daisuke , Kawaguchi Noriaki , Yanagida Takayuki 
Published: December 2020

AbstractA glass phosphor is an attractive material for applications in radiation detections because of its high workability and availability with a wide range of chemical compositions. Recently, X-ray-induced luminescence of glasses containing various luminescent activators are actively investigated worldwide. In applications as phosphor, tailoring valence state of activators, which can take multiple valence states in glass, is very important. In this research, we studied effects of glass melting atmosphere on the valence state of copper-activator ion in alkaline aluminophosphate glasses and the radiation-induced luminescence characteristics. Optical absorption and X-ray absorption near edge structure spectra of Cu-doped glasses showed that the glass fused in Ar atmosphere contains higher concentration of Cu+ than those prepared in air. In addition, the presence of Cu+ enhances the photoluminescence (PL) quantum yield and PL kinetic constant. Furthermore, the increase of Cu+ concentration resulted an improvement of the X-ray-induced scintillation and thermally-stimulated luminescence intensity.
Determinants of delay in diagnosis and end stage at presentation among breast cancer patients in Iran: a multi-center study
Authors: Foroozani Elahe , Ghiasvand Reza , Mohammadianpanah Mohammad , Afrashteh Sima , Bastam Dariush , Kashefi Fatemeh , Shakarami Saba , Dianatinasab Mostafa 
Published: December 2020

AbstractOne of the reasons for high mortality of breast cancer (BC) is long delay in seeking medical care and end stage at presentation. This study was designed to measure the association between a wide range of socio-demographic and clinical factors with diagnostic delay in BC and stage at presentation among Iranian patients. From June 2017 to December 2019, 725 patients with newly diagnosed BC in Shiraz and Kermanshah were selected and information on BC diagnosis delay was obtained from the patient’s medical record. Data on socio-economic status was obtained via a structured interview. Our findings suggest that 45.8% of the patients were diagnosed at a late stage (stage 3 or higher). A total of 244 (34%) patients had more than 3 months delay in diagnosis. We found a significant association between stage at diagnosis and place of residence (adjusted odds ratio (aOR rural vs. urban = 1.69, 95% CI 1.49–1.97), marital status (aOR 1.61, 95% CI 1.42–1.88), family history of BC (aOR 1.46, 95% CI 1.01–2.13), and history of benign breast disease (BBD) (aOR 1.94, 95% CI 1.39–2.72) or unaware of breast self-examination (BSE) (aOR 1.42, 95% CI 1.42–1.85), delay time (aOR 3.25, 95% CI 1.04–5.21), and left breast tumor (aOR right vs. left 2.64, 95% CI 1.88–3.71) and smoking (aOR no vs. yes 1.59, 95% CI 1.36–1.97). Also, delay in diagnosis was associated with age, family income, health insurance, place of residence, marital status, menopausal status, history of BBD, awareness of breast self-examination, type of first symptoms, tumor histology type, BMI and comorbidity (p < 0.05 for all). Factors including history of BBD, awareness of BSE, and suffering from chronic diseases were factors associated with both delay in diagnosis and end stage of disease. These mainly modifiable factors are associated with the progression of the disease.
Mild hyperlipidemia in mice aggravates platelet responsiveness in thrombus formation and exploration of platelet proteome and lipidome
Authors: van Geffen Johanna P. , Swieringa Frauke , van Kuijk Kim , Tullemans Bibian M. E. , Solari Fiorella A. , Peng Bing , Clemetson Kenneth J. , Farndale Richard W. , Dubois Ludwig J. , Sickmann Albert , Zahedi René P. , Ahrends Robert , Biessen Erik A. L. , Sluimer Judith C. , Heemskerk Johan W. M. , Kuijpers Marijke J. E. 
Published: December 2020

AbstractHyperlipidemia is a well-established risk factor for cardiovascular diseases. Millions of people worldwide display mildly elevated levels of plasma lipids and cholesterol linked to diet and life-style. While the prothrombotic risk of severe hyperlipidemia has been established, the effects of moderate hyperlipidemia are less clear. Here, we studied platelet activation and arterial thrombus formation in Apoe−/− and Ldlr−/− mice fed a normal chow diet, resulting in mildly increased plasma cholesterol. In blood from both knockout mice, collagen-dependent thrombus and fibrin formation under flow were enhanced. These effects did not increase in severe hyperlipidemic blood from aged mice and upon feeding a high-fat diet (Apoe−/− mice). Bone marrow from wild-type or Ldlr−/− mice was transplanted into irradiated Ldlr−/− recipients. Markedly, thrombus formation was enhanced in blood from chimeric mice, suggesting that the hyperlipidemic environment altered the wild-type platelets, rather than the genetic modification. The platelet proteome revealed high similarity between the three genotypes, without clear indication for a common protein-based gain-of-function. The platelet lipidome revealed an altered lipid profile in mildly hyperlipidemic mice. In conclusion, in Apoe−/− and Ldlr−/− mice, modest elevation in plasma and platelet cholesterol increased platelet responsiveness in thrombus formation and ensuing fibrin formation, resulting in a prothrombotic phenotype.
Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Authors: West Katrina M. , Richards Zoe T. , Harvey Euan S. , Susac Robert , Grealy Alicia , Bunce Michael 
Published: December 2020

AbstractSubterranean ecosystems are understudied and challenging to conventionally survey given the inaccessibility of underground voids and networks. In this study, we conducted a eukaryotic environmental DNA (eDNA) metabarcoding survey across the karst landscape of Christmas Island, (Indian Ocean, Australia) to evaluate the utility of this non-invasive technique to detect subterranean aquatic ‘stygofauna’ assemblages. Three metabarcoding assays targeting the mitochondrial 16S rRNA and nuclear 18S genes were applied to 159 water and sediment samples collected from 23 caves and springs across the island. Taken together, our assays detected a wide diversity of chordates, cnidarians, porifera, arthropods, molluscs, annelids and bryozoans from 71 families across 60 orders. We report a high level of variation between cave and spring subterranean community compositions which are significantly influenced by varying levels of salinity. Additionally, we show that dissolved oxygen and longitudinal gradients significantly affect biotic assemblages within cave communities. Lastly, we combined eDNA-derived community composition and environmental (water quality) data to predict potential underground interconnectivity across Christmas Island. We identified three cave and spring groups that showed a high degree of biotic and abiotic similarity indicating likely local connectivity. This study demonstrates the applicability of eDNA metabarcoding to detect subterranean eukaryotic communities and explore underground interconnectivity.
Heatwaves during low tide are critical for the physiological performance of intertidal macroalgae under global warming scenarios
Authors: Román Marta , Román Salvador , Vázquez Elsa , Troncoso Jesús , Olabarria Celia 
Published: December 2020

AbstractThe abundance and distribution of intertidal canopy-forming macroalgae are threatened by the increase in sea surface temperature and in the frequency and intensity of heatwaves caused by global warming. This study evaluated the physiological response of predominant intertidal macroalgae in the NW Iberian Peninsula (Bifurcaria bifurcata, Cystoseira tamariscifolia and Codium tomentosum) to increased seawater temperature during immersion and increased air temperatures during consecutive emersion cycles. We combined field mensuration and laboratory experiments in which we measured mortality, growth, maximum quantum yield and C:N content of the macroalgae. Air temperature was a critical factor in determining physiological responses and survivorship of all species, whereas high seawater temperature had sublethal effects. Cystoseira tamariscifolia suffered the greatest decreases in Fv/Fm, growth and the highest mortality under higher air temperatures, whereas C. tomentosum was the most resistant and resilient species. Two consecutive cycles of emersion under atmospheric heatwaves caused cumulative stress in all three macroalgae, affecting the physiological performance and increasing the mortality. The potential expansion of the warm-temperate species B. bifurcata, C. tamariscifolia and C. tomentosum in the NW Iberian Peninsula in response to increasing seawater temperature may be affected by the impact of increased air temperature, especially in a region where the incidence of atmospheric heatwaves is expected to increase.
Composition and geographic variation of the bacterial microbiota associated with the coelomic fluid of the sea urchin Paracentrotus lividus
Authors: Faddetta Teresa , Ardizzone Francesco , Faillaci Francesca , Reina Chiara , Palazzotto Emilia , Strati Francesco , De Filippo Carlotta , Spinelli Giovanni , Puglia Anna Maria , Gallo Giuseppe , Cavalieri Vincenzo 
Published: December 2020

AbstractIn the present work, culture-based and culture-independent investigations were performed to determine the microbiota structure of the coelomic fluid of Mediterranean sea urchinParacentrotus lividusindividuals collected from two distinct geographical sites neighboring a high-density population bay and a nature reserve, respectively. Next Generation Sequencing analysis of 16S rRNA gene (rDNA) showed that members of theProteobacteria,BacteroidetesandFusobacteriaphyla, which have been previously reported to be commonly retrieved from marine invertebrates, dominate the overall population of microorganisms colonizing this liquid tissue, with minority bacterial genera exhibiting remarkable differences among individuals. Our results showed that there is a correlation between microbiota structure and geographical location of the echinoderm collection site, highlighting over-representation of metagenomic functions related to amino acid and bioactive peptides metabolism in specimens inhabiting the nature reserve. Finally, we also described the developmental delay and aberrations exhibited by sea urchin embryos exposed to distinct bacterial isolates, and showed that these defects rely upon hydrophilic compound(s) synthesized by the bacterial strains assayed. Altogether, our findings lay the groundwork to decipher the relationships of bacteria with sea urchins in their aquatic environment, also providing an additional layer of information to understand the biological roles of the coelomic fluid.
Non-invasive pulmonary artery pressure estimation by electrical impedance tomography in a controlled hypoxemia study in healthy subjects
Authors: Proença Martin , Braun Fabian , Lemay Mathieu , Solà Josep , Adler Andy , Riedel Thomas , Messerli Franz H. , Thiran Jean-Philippe , Rimoldi Stefano F. , Rexhaj Emrush 
Published: December 2020

AbstractPulmonary hypertension is a hemodynamic disorder defined by an abnormal elevation of pulmonary artery pressure (PAP). Current options for measuring PAP are limited in clinical practice. The aim of this study was to evaluate if electrical impedance tomography (EIT), a radiation-free and non-invasive monitoring technique, can be used for the continuous, unsupervised and safe monitoring of PAP. In 30 healthy volunteers we induced gradual increases in systolic PAP (SPAP) by exposure to normobaric hypoxemia. At various stages of the protocol, the SPAP of the subjects was estimated by transthoracic echocardiography. In parallel, in the pulmonary vasculature, pulse wave velocity was estimated by EIT and calibrated to pressure units. Within-cohort agreement between both methods on SPAP estimation was assessed through Bland–Altman analysis and at subject level, with Pearson’s correlation coefficient. There was good agreement between the two methods (inter-method difference not significant (P > 0.05), bias ± standard deviation of − 0.1 ± 4.5 mmHg) independently of the degree of PAP, from baseline oxygen saturation levels to profound hypoxemia. At subject level, the median per-subject agreement was 0.7 ± 3.8 mmHg and Pearson’s correlation coefficient 0.87 (P < 0.05). Our results demonstrate the feasibility of accurately assessing changes in SPAP by EIT in healthy volunteers. If confirmed in a patient population, the non-invasive and unsupervised day-to-day monitoring of SPAP could facilitate the clinical management of patients with pulmonary hypertension.
Effects of constructal theory on thermal management of a power electronic system
Authors: Asadi Amin , Pourfattah Farzad 
Published: December 2020

AbstractThermal management of power electronics (PE) systems is a long-lasting challenge in their industrial applications. It is important to provide a uniform temperature distribution on the surface of the insulated gate bipolar transistors and diodes. The thermal management of a PE module is the main objective of the present study. The flow characteristics and the effects of the constructal theory on the heat transfer performance of the cooling system have been numerically investigated. The governing equations have been discretized using the finite volume method, and validation has been done to make sure the results are reliable. The effects of different channels configurations on decreasing the chips’ temperature and uniform temperature distribution on the chips’ surface have been studied. The flow characteristics and heat transfer performance at different mass flow rates for different channel configurations have been studied by presenting the results of the average chips’ temperature, Nusselt (Nu) number, pressure loss, and standard temperature deviation. Moreover, different temperature distribution contours have been presented to show the performance of different configurations. The results revealed that by changing the channels’ configuration from the conventional straight channel to leaf-inspired channels (case B and C), the cooling performance is improved.
Dynamic switching between intrinsic and extrinsic mode networks as demands change from passive to active processing
Authors: Riemer Frank , Grüner Renate , Beresniewicz Justyna , Kazimierczak Katarzyna , Ersland Lars , Hugdahl Kenneth 
Published: December 2020

AbstractIn this study we report on the relationship between default and extrinsic mode networks across alternating brief periods of rest and active task processing. Three different visual tasks were used in a classic fMRI ON–OFF block design where task (ON) blocks alternated with equal periods of rest (OFF) blocks: mental rotation, working memory and mental arithmetic. We showed the existence of a generalized task-positive network, labelled the extrinsic mode network (EMN) that is anti-correlated with the default mode network (DMN) as processing demands shifted from rest to active processing. We then identified two key regions of interest (ROIs) in the supplementary motor area (SMA) and precuneus/posterior cingulate cortex (PCC) regions as hubs for the extrinsic and intrinsic networks, and extracted the time-course from these ROIs. The results showed a close to perfect anti-correlation for the SMA and Precuneus/PCC time-courses for ON- and OFF-blocks. We suggest the existence of two large-scale networks, an extrinsic mode network and an intrinsic mode network, which are up- and down-regulated as environmental demands change from active to passive processing.
Extralesional microvascular and structural macular abnormalities in cytomegalovirus retinitis
Authors: Wongchaisuwat Nida , Khongpipatchaisiri Sansanee , Boonsopon Sutasinee , Choopong Pitipol , Tesavibul Nattaporn , Prakhunhungsit Supalert , Thoongsuwan Somanus , Rodanant Nuttawut , Phasukkijwatana Nopasak 
Published: December 2020

AbstractTo evaluate extralesional microvascular and structural changes of the macula using optical coherence tomography angiography (OCTA) and structural OCT in cytomegalovirus retinitis (CMVR). An observational study of CMVR patients were performed. Complete ophthalmic examination, serial color fundus photography, structural OCT and OCTA were performed at baseline and follow-up visits for up to 12 months. The structural OCT was analyzed to evaluate macular areas within, bordering and beyond the CMVR lesions. Extralesional retinal capillary plexus of the macula were evaluated by OCT angiography and compared with the unaffected fellow eyes. Thirteen eyes from 13 patients were enrolled. At baseline, macular areas without CMVR lesions showed decreased vessel density (VD) of both the superficial (P = 0.0002) and deep (P < 0.0001) retinal capillary plexus in eyes with CMVR as compared with the corresponding macular areas of the unaffected fellow eyes. The decrease of VD persisted through the follow-up period for up to 12 months after adjusting for degree of vitreous haze. Structural macular OCT characteristics at the borders and beyond the lesions included intraretinal hyperreflective dots, cystoid macular edema, subretinal fluid and selective ellipsoid zone (EZ) loss. The selective EZ loss found in 6 of 12 eyes showed recovery in 4 eyes after receiving anti-viral treatment. In CMVR eyes, there were microvascular and microstructural abnormalities in the macular area without clinically visible CMVR lesions. Our results provided interesting insights into CMV infection of the retina.
Acclimatization of photosynthetic apparatus and antioxidant metabolism to excess soil cadmium in Buddleja spp.
Authors: Gong Weichang , Dunn Bruce L. , Chen Yaqing , Shen Yunmei 
Published: December 2020

AbstractHeavy metal (HM) pollutants can cause serious phytotoxicity or oxidative stress in plants. Buddleja L., commonly known as “butterfly bushes”, are frequently found growing on HM-contaminated land. However, to date, few studies have focused on the physiological and biochemical responses of Buddleja species to HM stress. In this study, potted seedlings of B. asiatica Lour. and B. macrostachya Wall. ex Benth. were subjected to various cadmium (Cd) concentrations (0, 25, 50, 100, and 200 mg kg−1) for 90 days. Both studied Buddleja species showed restricted Cd translocation capacity. Exposure to Cd, non-significant differences (p > 0.05) were observed, including quantum yield of photosystem II (PSII), effective quantum yield of PSII, photochemical quenching and non-photochemical quenching in both species between all studied Cd concentrations. Moreover, levels of cellular reactive oxygen species (ROS) significantly declined (p < 0.05) with low malondialdehyde concentrations. In B. asiatica, high superoxide dismutase and significantly enhanced (p < 0.05) peroxidase (POD) activity contributed greatly to the detoxification of excess ROS, while markedly enhanced POD activity was observed in B. macrostachya. Additionally, B. macrostachya showed higher membership function values than did B. asiatica. These results suggested that both Buddleja species exhibited high Cd resistance and acclimatization.
Constant neuropilar ratio in the insect brain
Authors: Polilov Alexey A. , Makarova Anastasia A. 
Published: December 2020

AbstractRevealing scaling rules is necessary for understanding the morphology, physiology and evolution of living systems. Studies of animal brains have revealed both general patterns, such as Haller's rule, and patterns specific for certain animal taxa. However, large-scale studies aimed at studying the ratio of the entire neuropil and the cell body rind in the insect brain have never been performed. Here we performed morphometric study of the adult brain in 37 insect species of 26 families and ten orders, ranging in volume from the smallest to the largest by a factor of more than 4,000,000, and show that all studied insects display a similar ratio of the volume of the neuropil to the cell body rind, 3:2. Allometric analysis for all insects shows that the ratio of the volume of the neuropil to the volume of the brain changes strictly isometrically. Analyses within particular taxa, size groups, and metamorphosis types also reveal no significant differences in the relative volume of the neuropil; isometry is observed in all cases. Thus, we establish a new scaling rule, according to which the relative volume of the entire neuropil in insect brain averages 60% and remains constant.
The transcription factor TAL1 and miR-17-92 create a regulatory loop in hematopoiesis
Authors: Meyer Annekarin , Herkt Stefanie , Kunze-Schumacher Heike , Kohrs Nicole , Ringleb Julia , Schneider Lucas , Kuvardina Olga N. , Oellerich Thomas , Häupl Björn , Krueger Andreas , Seifried Erhard , Bonig Halvard , Lausen Joern 
Published: December 2020

AbstractA network of gene regulatory factors such as transcription factors and microRNAs establish and maintain gene expression patterns during hematopoiesis. In this network, transcription factors regulate each other and are involved in regulatory loops with microRNAs. The microRNA cluster miR-17-92 is located within the MIR17HG gene and encodes six mature microRNAs. It is important for hematopoietic differentiation and plays a central role in malignant disease. However, the transcription factors downstream of miR-17-92 are largely elusive and the transcriptional regulation of miR-17-92 is not fully understood. Here we show that miR-17-92 forms a regulatory loop with the transcription factor TAL1. The miR-17-92 cluster inhibits expression of TAL1 and indirectly leads to decreased stability of the TAL1 transcriptional complex. We found that TAL1 and its heterodimerization partner E47 regulate miR-17-92 transcriptionally. Furthermore, miR-17-92 negatively influences erythroid differentiation, a process that depends on gene activation by the TAL1 complex. Our data give example of how transcription factor activity is fine-tuned during normal hematopoiesis. We postulate that disturbance of the regulatory loop between TAL1 and the miR-17-92 cluster could be an important step in cancer development and progression.