bluuebunny/crossref_metadata_2025_split huggingface dataset:
Low frequency transcranial magnetic stimulation of right posterior parietal cortex reduces reaction time to perithreshold low spatial frequency visual stimuli
Authors: Elkin-Frankston Seth , Rushmore Richard J. , Valero-Cabré Antoni 
Published: February 2020

AbstractResearch in humans and animal models suggests that visual responses in early visual cortical areas may be modulated by top-down influences from distant cortical areas, particularly in the frontal and parietal regions. The right posterior parietal cortex is part of a broad cortical network involved in aspects of visual search and attention, but its role in modulating activity in early visual cortical areas is less well understood. This study evaluated the influence of right posterior parietal cortex (PPC) on a direct measure of visual processing in humans. Contrast sensitivity (CS) and detection response times were recorded using a visual detection paradigm to two types of centrally-presented stimuli. Participants were tested on the detection task before, after, and 1 hour after low-frequency repetitive transcranial magnetic stimulation (rTMS) to the right PPC or to the scalp vertex. Low-frequency rTMS to the right PPC did not significantly change measures of contrast sensitivity, but increased the speed at which participants responded to visual stimuli of low spatial frequency. Response times returned to baseline 1-hour after rTMS. These data indicate that low frequency rTMS to the right PPC speeds up aspects of early visual processing, likely due to a disinhibition of the homotopic left posterior parietal cortex.
Folding intermediate states of the parallel human telomeric G-quadruplex DNA explored using Well-Tempered Metadynamics
Authors: Rocca Roberta , Palazzesi Ferruccio , Amato Jussara , Costa Giosuè , Ortuso Francesco , Pagano Bruno , Randazzo Antonio , Novellino Ettore , Alcaro Stefano , Moraca Federica , Artese Anna 
Published: February 2020

AbstractAn increasingly comprehension of the folding intermediate states of DNA G-quadruplexes (G4s) is currently an important scientific challenge, especially for the human telomeric (h-tel) G4s-forming sequences, characterized by a highly polymorphic nature. Despite the G-triplex conformation was proposed as one of the possible folding intermediates for the antiparallel and hybrid h-tel G4s, for the parallel h-tel topology with an all-anti guanine orientation, a vertical strand-slippage involving the G-triplets was proposed in previous works through microseconds-long standard molecular dynamics simulations (MDs). Here, in order to get further insights into the vertical strand-slippage and the folding intermediate states of the parallel h-tel G4s, we have carried out a Well-Tempered Metadynamics simulation (WT-MetaD), which allowed us to retrieve an ensemble of six G4s having two/G-tetrad conformations derived by the G-triplets vertical slippage. The insights highlighted in this work are aimed at rationalizing the mechanistic characterisation of the parallel h-tel G4 folding process.
Age of puberty and Sleep duration: Observational and Mendelian randomization study
Authors: Wang Jiao , Kwok Man Ki , Au Yeung Shiu Lun , Zhao Jie , Li Albert Martin , Lam Hugh Simon , Leung Gabriel Matthew , Schooling Catherine Mary 
Published: February 2020

AbstractEarlier age of puberty has detrimental consequences for many aspects of health. Here, for the first time, we assessed the association of earlier puberty with sleep duration observationally and with validation using Mendelian Randomization. In the “Children of 1997” birth cohort (n = 8,327), we used adjusted multivariable logistic regression to assess the associations of each clinically assessed marker of earlier puberty with self-report sleep duration in adolescence. Using two-sample MR, we assessed the effect of earlier puberty timing based on 203 single nucleotide polymorphisms applied to genome wide association studies of sleep duration in adults (n = 335,410). In “Children of 1997”, cross-sectionally, older age of menarche was associated with longer (9+ hours) sleep duration [odds ratio (OR) 1.11, 95% confidence interval (CI) 1.01 to 1.21] at 13.5 years. The other earlier puberty markers were unrelated to sleep duration. Using inverse variance weighting, later of age at menarche increased adult sleep duration [0.020 per category, 95% CI 0.006 to 0.034]. This study demonstrated a causal effect of age at menarche on adult sleep duration, since age of menarche also affects obesity, our novel finding may be relevant to the observed relation of sleep duration with obesity and poor health.
Resting State Functional Connectivity of the Thalamus in North Korean Refugees with and without Posttraumatic Stress Disorder
Authors: Jeon Sehyun , Lee Yu Jin , Park Inkyung , Kim Nambeom , Kim Soohyun , Jun Jin Yong , Yoo So Young , Lee So Hee , Kim Seog Ju 
Published: February 2020

AbstractIn posttraumatic stress disorder (PTSD), functional connectivity (FC) between the thalamus and other brain areas has yet to be comprehensively investigated. The present study explored resting state FC (rsFC) of thalamus and its associations with trauma-related features. The included subjects were North Korean refugees with PTSD (n = 23), trauma-exposed North Korean refugees without PTSD (trauma-exposed control [TEC] group, n = 22), and South Korean healthy controls (HCs) without traumatic experiences (HC group, n = 40). All participants underwent psychiatric evaluation and functional magnetic resonance imaging (fMRI) procedures using the bilateral thalamus as seeds. In the TEC group, the negative rsFC between each thalamus and its contralateral postcentral cortex was stronger relative to the PTSD and HC groups, while positive rsFC between the left thalamus and left precentral cortex was stronger in the HC group compared to the PTSD and TEC groups. Thalamo-postcentral rsFC was positively correlated with the CAPS total score in the TEC group, and with the number of traumatic experiences in the PTSD group. The present study identified the difference of thalamic rsFC alterations among traumatized refugees and HCs. Negative rsFC between the thalamus and somatosensory cortices might be compensatory changes after multiple traumatic events in refugees.
Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria
Authors: Ajogbasile Fehintola V. , Oguzie Judith U. , Oluniyi Paul E. , Eromon Philomena E. , Uwanibe Jessica N. , Mehta Samar B. , Siddle Katherine J. , Odia Ikponmwosa , Winnicki Sarah M. , Akpede Nosa , Akpede George , Okogbenin Sylvanus , Ogbaini-Emovon Ephraim , MacInnis Bronwyn L. , Folarin Onikepe A. , Modjarrad Kayvon , Schaffner Stephen F. , Tomori Oyewale , Ihekweazu Chikwe , Sabeti Pardis C. , Happi Christian T. 
Published: February 2020

AbstractFifty patients with unexplained fever and poor outcomes presented at Irrua Specialist Teaching Hospital (ISTH) in Edo State, Nigeria, an area endemic for Lassa fever, between September 2018 - January 2019. After ruling out Lassa fever, plasma samples from these epidemiologically-linked cases were sent to the African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer’s University, Ede, Osun State, Nigeria, where we carried out metagenomic sequencing which implicated yellow fever virus (YFV) as the etiology of this outbreak. Twenty-nine of the 50 samples were confirmed positive for YFV by reverse transcriptase-quantitative polymerase chain reaction (RT-qPCR), 14 of which resulted in genome assembly. Maximum likelihood phylogenetic analysis revealed that these YFV sequences formed a tightly clustered clade more closely related to sequences from Senegal than sequences from earlier Nigerian isolates, suggesting that the YFV clade responsible for this outbreak in Edo State does not descend directly from the Nigerian YFV outbreaks of the last century, but instead reflects a broader diversity and dynamics of YFV in West Africa. Here we demonstrate the power of metagenomic sequencing for identifying ongoing outbreaks and their etiologies and informing real-time public health responses, resulting in accurate and prompt disease management and control.
High-energy, Long-cycle-life Secondary Battery with Electrochemically Pre-doped Silicon Anode
Authors: Wang Ying , Satoh Masaharu , Arao Masazumi , Matsumoto Masashi , Imai Hideto , Nishihara Hiroshi 
Published: February 2020

AbstractElectrochemical pre-doping of a silicon electrode was investigated to create a new class of rechargeable battery with higher energy density. The electrochemical reaction during pre-doping formed a high-quality solid electrolyte interface (SEI) on the surface of silicon particles, which improved the charge and discharge cycle life with a small irreversible capacity. The surface composition of the pre-doped silicon particles was characterized using transmission electron microscopy (TEM), solid state magic-angle-spinning (MAS) nuclear magnetic resonance (NMR) and X-ray diffraction analysis (XRD). Pressurization promoted SEI growth and lithium binding with silicon to form Li15Si4 accompanied by the reductive reaction product of Li2CO3 originated from electrolyte. The Li15Si4 was highly stable when the silicon anode was used in a full cell, thus resulting in a silicon anode with a long cycle life.
Abrogation of type-I interferon signalling alters the microglial response to Aβ1–42
Authors: Moore Zachery , Mobilio Frank , Walker Frederick R. , Taylor Juliet M. , Crack Peter J. 
Published: February 2020

AbstractNeuroinflammation and accompanying microglial dysfunction are now appreciated to be involved in Alzheimer’s disease (AD) pathogenesis. Critical to the process of neuroinflammation are the type-I interferon (IFN) family of cytokines. Efforts to phenotypically characterize microglia within AD identify distinct populations associated with type-I IFN signalling, yet how this affects underlying microglial function is yet to be fully elucidated. Here we demonstrate that Aβ1–42 exposure increases bioactive levels of type-I IFN produced by primary microglia alongside increased expression of type-I IFN related genes. Primary microglia isolated from brains of APPswePS1ΔE9 mice with ablated type-I IFN signalling show an increased phagocytic ability to uptake FITC-Aβ1–42. Correlative assessment of plaque sizes in aged APPswePS1ΔE9 mice with abrogated type-I IFN signalling show unchanged deposition levels. Microglia from these mice did however show alterations in morphology. This data further highlights the role of type-I IFN signalling within microglia and identifies a role in phagocytosis. As such, targeting both microglial and global type-I IFN signalling presents as a novel therapeutic strategy for AD management.
Analysis tools to quantify dissemination of pathology in zebrafish larvae
Authors: Stirling David R. , Suleyman Oniz , Gil Eliza , Elks Philip M. , Torraca Vincenzo , Noursadeghi Mahdad , Tomlinson Gillian S. 
Published: February 2020

AbstractWe describe new open source software called QuantiFish for rapid quantitation of fluorescent foci in zebrafish larvae, to support infection research in this animal model. QuantiFish extends the conventional measurements of bacterial load and number of bacterial foci to include measures for dissemination of infection. These are represented by the proportions of bacteria between foci and their spatial distribution. We showcase these measures by comparison of intravenous and hindbrain routes ofMycobacterium marinuminfection, which are indistinguishable by measurement of bacterial load and not consistently differentiated by the number of bacterial foci. The intravenous route showed dose dependent dissemination of infection, reflected by increased spatial dispersion of bacteria and lower proportions of bacteria distributed across many foci. In contrast, hindbrain infection resulted in localised disease, limited to a smaller area and higher proportions of bacteria distributed across fewer foci. The application of QuantiFish may extend beyond models of infection, to study other pathologies such as metastatic cancer.
Potential predictability of skipjack tuna (Katsuwonus pelamis) catches in the Western Central Pacific
Authors: Kim Jihwan , Na Hanna , Park Young-Gyu , Kim Young Ho 
Published: February 2020

AbstractThe Pacific Island countries have a substantial socio-economic dependency on fisheries. Skipjack tuna is one of the most important species in the Western Central Pacific (WCP) and its catches in this region exhibit a spatio-temporal variability influenced by ocean conditions, mainly the El Niño-Southern Oscillation (ENSO). This study investigates the relationship between skipjack tuna catch amounts and environmental variables in the equatorial Pacific during 1990–2014, and evaluates the potential predictability of the catches based on their statistical relationship. A series of regressed and reconstructed spatial patterns of upper-ocean temperature, salinity, currents and precipitation represent ENSO-like variability, and their principal component time series are used to estimate the predictability of skipjack tuna catches in the Federated States of Micronesia (FSM). ENSO-like variability depicted from 100 m temperature and 5 m salinity in the equatorial Pacific exhibit a significant predictability for the annual catch amount in the FSM for several years with a training period of > 20 years. This suggests that the subsurface temperature or near surface salinity can be a better predictor of ecosystem variability than widely used sea surface temperature. Applications of this result to other species could have broad implications for the fishery industry in the WCP.
The role of initial speed in projectile impacts into light granular media
Authors: Huang Kai , Hernández-Delfin Dariel , Rech Felix , Dichtl Valentin , Hidalgo Raúl Cruz 
Published: February 2020

AbstractProjectile impact into a light granular material composed of expanded polypropylene (EPP) particles is investigated systematically with various impact velocities. Experimentally, the trajectory of an intruder moving inside the granular material is monitored with a recently developed non-invasive microwave radar system. Numerically, discrete element simulations together with coarse-graining techniques are employed to address both dynamics of the intruder and response of the granular bed. Our experimental and numerical results of the intruder dynamics agree with each other quantitatively and are in congruent with existing phenomenological model on granular drag. Stepping further, we explore the ‘microscopic’ origin of granular drag through characterizing the response of granular bed, including density, velocity and kinetic stress fields at the mean-field level. In addition, we find that the dynamics of cavity collapse behind the intruder changes significantly when increasing the initial speed . Moreover, the kinetic pressure ahead of the intruder decays exponentially in the co-moving system of the intruder. Its scaling gives rise to a characteristic length scale, which is in the order of intruder size. This finding is in perfect agreement with the long-scale inertial dissipation type that we find in all cases.
Light-induced silencing of neural activity in Rosa26 knock-in and BAC transgenic mice conditionally expressing the microbial halorhodopsin eNpHR3
Authors: Imayoshi Itaru , Tabuchi Sawako , Matsumoto Mami , Kitano Satsuki , Miyachi Hitoshi , Kageyama Ryoichiro , Yamanaka Akihiro 
Published: February 2020

AbstractAn engineered light-inducible chloride pump, Natronomonas pharaonis halorhodopsin 3 (eNpHR3) enables temporally and spatially precise inhibition of genetically defined cell populations in the intact nervous tissues. In this report, we show the generation of new mouse strains that express eNpHR3-EYFP fusion proteins after Cre- and/or Flp-mediated recombination to optically inhibit neuronal activity. In these mouse strains, Cre/Flp recombination induced high levels of opsin expression. We confirmed their light-induced activities by brain slice whole-cell patch clamp experiments. eNpHR3-expressing neurons were optically hyperpolarized and silenced from firing action potentials. In prolonged silencing of action potentials, eNpHR3 was superior to eNpHR2, a former version of the engineered pump. Thus, these eNpHR3 mouse strains offer reliable genetic tools for light-induced inhibiting of neuronal activity in defined sets of neurons.
Tailored for Real-World: A Whole Slide Image Classification System Validated on Uncurated Multi-Site Data Emulating the Prospective Pathology Workload
Authors: Ianni Julianna D. , Soans Rajath E. , Sankarapandian Sivaramakrishnan , Chamarthi Ramachandra Vikas , Ayyagari Devi , Olsen Thomas G. , Bonham Michael J. , Stavish Coleman C. , Motaparthi Kiran , Cockerell Clay J. , Feeser Theresa A. , Lee Jason B. 
Published: February 2020

AbstractStandard of care diagnostic procedure for suspected skin cancer is microscopic examination of hematoxylin & eosin stained tissue by a pathologist. Areas of high inter-pathologist discordance and rising biopsy rates necessitate higher efficiency and diagnostic reproducibility. We present and validate a deep learning system which classifies digitized dermatopathology slides into 4 categories. The system is developed using 5,070 images from a single lab, and tested on an uncurated set of 13,537 images from 3 test labs, using whole slide scanners manufactured by 3 different vendors. The system’s use of deep-learning-based confidence scoring as a criterion to consider the result as accurate yields an accuracy of up to 98%, and makes it adoptable in a real-world setting. Without confidence scoring, the system achieved an accuracy of 78%. We anticipate that our deep learning system will serve as a foundation enabling faster diagnosis of skin cancer, identification of cases for specialist review, and targeted diagnostic classifications.
MultiFRAGing: Rapid and Simultaneous Genotyping of Multiple Alleles in a Single Reaction
Authors: Petree Cassidy , Varshney Gaurav K. 
Published: February 2020

AbstractPowerful and simple, RNA-guided CRISPR/Cas9 technology is a versatile genome editing tool that has revolutionized targeted mutagenesis. CRISPR-based genome editing has enabled large-scale functional genetic studies through the generation of gene knockouts in a variety of model organisms including zebrafish, and can be used to target multiple genes simultaneously. One of the challenges associated with the large scale application of this technique to zebrafish is the lack of a cost-effective method by which to identify mutants. To address this, we optimized the high-throughput, high-resolution fluorescent PCR-based fragment analysis method to develop MultiFRAGing - a robust and cost-effective method to genotype multiple targets in a single reaction. Our approach can identify indels in up to four targets from a single reaction, which represents a four-fold increase in genotyping throughput. This method can be used by any laboratory with access to capillary electrophoresis-based sequencing equipment.
Impaired motor skill learning and altered seizure susceptibility in mice with loss or gain of function of the Kcnt1 gene encoding Slack (KNa1.1) Na+-activated K+ channels
Authors: Quraishi Imran H. , Mercier Michael R. , McClure Heather , Couture Rachael L. , Schwartz Michael L. , Lukowski Robert , Ruth Peter , Kaczmarek Leonard K. 
Published: February 2020

AbstractGain-of-function mutations in KCNT1, the gene encoding Slack (KNa1.1) channels, result in epilepsy of infancy with migrating focal seizures (EIMFS) and several other forms of epilepsy associated with severe intellectual disability. We have generated a mouse model of this condition by replacing the wild type gene with one encoding Kcnt1R455H, a cytoplasmic C-terminal mutation homologous to a human R474H variant that results in EIMFS. We compared behavior patterns and seizure activity in these mice with those of wild type mice and Kcnt1−/− mice. Complete loss of Kcnt1 produced deficits in open field behavior and motor skill learning. Although their thresholds for electrically and chemically induced seizures were similar to those of wild type animals, Kcnt1−/− mice were significantly protected from death after maximum electroshock-induced seizures. In contrast, homozygous Kcnt1R455H/R455H mice were embryonic lethal. Video-EEG monitoring of heterozygous Kcnt1+/R455H animals revealed persistent interictal spikes, spontaneous seizures and a substantially decreased threshold for pentylenetetrazole-induced seizures. Surprisingly, Kcnt1+/R455H mice were not impaired in tasks of exploratory behavior or procedural motor learning. These findings provide an animal model for EIMFS and suggest that Slack channels are required for the development of procedural learning and of pathways that link cortical seizures to other regions required for animal survival.
The impermanent effect of waste incineration on children’s development from 6 months to 8 years: A Taiwan Birth Cohort Study
Authors: Lung For-Wey , Shu Bih-Ching , Chiang Tung-Liang , Lin Shio-Jean 
Published: February 2020

AbstractIncineration is a solution to waste problems; however, it has adverse effects on human health. Our study aimed to investigate the direct and indirect effects of living near an incinerator and breastfeeding on children’s development at 6, 18, 36 and 66 months, and 8 years of age. The Taiwan Birth Cohort Study dataset used included randomized community data on 19,519 children from 6 months to 8 years old. The Taiwan Birth Cohort Study Developmental Instrument was used to measure children’s development at different developmental ages. The results of our study showed that living within 3 km of an incinerator had a negative effect on children’s 6-month development, however the effect dissipated after 18 months. Having been breastfed and living in the city had a more persistent and pervasive positive effect on children’s development. Conversely, living in the city had an adverse effect on children’s social-communication and emotional development when they were 8 years old; possibly due to the Chinese cultural characteristic of collectivism. Further follow-up of the long-term interactive effects of proximity to an incinerator and breastfeeding on children’s development and health is needed.
A randomised controlled trial to assess the feasibility of utilising virtual reality to facilitate analgesia during external cephalic version
Authors: Smith Vinayak , Warty Ritesh Rikain , Kashyap Ravi , Neil Peter , Adriaans Carol , Nair Amrish , Krishnan Sathya , Da Silva Costa Fabricio , Vollenhoven Beverley , Wallace Euan M. 
Published: February 2020

AbstractExternal cephalic version (ECV) is associated with a moderate degree of pain. Virtual reality (VR) is a technology that has shown promise in offering procedural analgesia. We undertook a clinical pilot to assess the viability of VR to reduce pain during ECV. In an open randomised controlled trial (RCT), we randomised 50 women to either VR or standard care each (25 per group). Women receiving VR were administered VR content (Skylights) via a headset. Pre- and post-procedural measures of pain, anxiety, device experience and vital signs were measured. There were no significant differences between groups (VR/no VR) in pain scores (60.68 vs 49.76; p = 0.2), ECV success rates (80% vs 76%; p = 0.7) or anxiety levels. The women receiving VR had a significantly higher anticipation of pain pre-procedurally (70.0 vs 50.0; p = 0.03). 20 (80%) of the VR women indicated that they would use VR again and 22 (88%) indicated they would recommend it to a friend having ECV. There were no significant differences between groups for side effects encountered or changes in vital signs. We have shown that using VR during ECV is feasible and appears safe. Our results inform the design of future RCTs.