bluuebunny/crossref_metadata_2025_split huggingface dataset:
Exposure of the V1 Segment of the Vertebral Artery: Stepwise Cadaveric Surgical Simulation
Authors: Tayebi Meybodi Ali , Borba Moreira Leandro , Gandhi Sirin , Catapano Joshua C , Preul Mark C , Lawton Michael T 
Published: December 2019

Abstract

BACKGROUND
Surgical exposure of the V1 segment of the vertebral artery (V1-VA) at the lower neck may be necessary to address intravascular (atherosclerotic) and extravascular (external compression by neoplastic or degenerative) pathologies. The adjacent anatomy at the lower cervical region is complex and relatively unfamiliar to neurosurgeons compared to that of upper cervical levels. High-quality cadaveric images simulating the surgical approach to V1-VA are important for learning the relevant anatomy.

OBJECTIVE
To provide a brief stepwise depiction of the exposure of the V1-VA using a cadaveric surgical simulation.

METHODS
A cadaveric surgical simulation was performed on the left side to expose the V1-VA using the retrojugular and interjugular carotid approaches. The important adjacent anatomic structures en route to the V1-VA were identified.

RESULTS
A stepwise photographic demonstration of the surgical exposure of the V1-VA is provided.

CONCLUSION
Exposure of the V1-VA can be challenging and requires a clear anatomic understanding of the relevant anatomy. The present work attempts to facilitate this objective.
A cooperative study assessing reproductive performance in sows fed diets supplemented with organic or inorganic sources of trace minerals
Authors: Tsai Tsung , Apgar Gary A , Estienne Mark J , Wilson Mark , Maxwell Charles V 
Published: December 2019

Abstract
Sows from three university research facilities (n = 245) were stratified by parity and initial body weight (BW), and within outcome groups, randomly assigned to fortified corn- and soybean meal-based control or organic trace mineral-supplemented, gestation (3,339 kcal/kg ME; 0.62% standradized ileal digestible [SID] lysine), and lactation (3,374 kcal/kg ME; 0.97% SID lysine) diets. Control gestation and lactation diets were supplemented with inorganic trace minerals (120 ppm Zn from ZnO, 30 ppm Cu from CuSO4, and 50 ppm Mn from MnSO4), and the experimental diets contained the same total level of minerals but complexed organic trace minerals replaced 50% of the inorganic trace minerals. Sows were fed to condition during gestation and on an ad libitum basis during lactation. Sow BW (breeding, d 110 of gestation, 48 h post-farrowing, and weaning) and feed consumed were recorded. During gestation, control sows tended to gain less weight (60.4 vs. 64.6 kg, P = 0.06) and consumed less feed (263.5 vs. 264.8 kg, P = 0.05), and had poorer Gain:Feed (G:F) (0.27 vs. 0.29, P = 0.04) than sows fed the organic trace minerals. Sow average daily feed intake (ADFI) during lactation was similar (P = 0.28) between groups (4.93 vs. 4.74 kg for control and treated sows, respectively). Number of pigs born alive (11.4 vs. 10.9, P = 0.24) and weaned (10.2 vs. 9.8, P = 0.18), and pig pre-weaning average daily gain (ADG) (0.27 vs. 0.27 kg/d, P = 0.77) and mortality (13.1 vs. 12.9%, P = 0.92) were similar for control and treated sows, respectively. Results of the current study demonstrate that sows fed diets supplemented with organic trace minerals displayed similar reproductive performance, but improved weight gain and G:F during gestation compared with sows fed inorganic trace minerals.
A case study of a theory-based method for identifying and reporting core functions and forms of evidence-based interventions
Authors: Kirk M Alexis , Haines Emily R , Rokoske Franziska S , Powell Byron J , Weinberger Morris , Hanson Laura C , Birken Sarah A 
Published: December 2019

AbstractAdaptation of existing evidence-based interventions (EBIs) to improve their fit in new contexts is common. A critical first step in adaptation is to identify core functions (purposes) and forms (activities) of EBIs. Core functions should not be adapted as they are what account for the efficacy of EBIs. Despite their importance, core functions are rarely identified by EBI developers; methods for identifying them post hoc are lacking.We present a case study of theory-based methods for identifying core functions and forms post hoc. We developed these methods as the first step in a larger effort to adapt an existing EBI to improve the timeliness of referrals to hospice to a new patient population and care setting. Our methods were rooted in the Planned Adaptation Model (PAM). Through our case study, we developed six steps for identifying core functions and forms, as well as accompanying tools and methods. Our case study further operationalized PAM in several ways. Where PAM offered guiding tenets for identifying core functions and forms (review existing EBI materials, conduct primary data collection, and identify the theory of change), we produced specific tools (interview guides and codebooks) and methods (sampling approaches and analytic methods). Our case study extended PAM with the addition of two steps in the process of identifying core functions and forms: (a) identifying the usual care pathway, including barriers to the outcome of interest encountered in usual care, and (b) mapping EBI core functions onto an extant theory. Identifying core functions and forms is a critical first step in the adaptation process to ensure adaptations do not inadvertently compromise the efficacy or effectiveness of the EBI by compromising core functions. Our case study presents step-by-step methods that could be used by researchers or practitioners to identify core functions and forms post hoc.
Epipremnum aureum Keratopathy: Case Report and Review of the Literature
Authors: Cohen Adam K. , Theotoka Despoina , Galor Anat 
Published: December 2019

Objectives:
To report a novel case of Epipremnum aureum toxicity masquerading as bilateral infectious keratitis and review the literature on ocular manifestations of Epipremnum exposure.

Methods:
Case report and literature review.

Results:
A 70-year-old man with a history of photorefractive keratectomy presented with a 3-day history of bilateral eye pain. The patient reported exposure to plant debris while performing yard work and also water exposure while cleaning his coral fish tanks. Clinical examination revealed bilateral epitheliopathy progressing to frank epithelial defects with underlying stromal necrosis 6 days after exposure. Empiric topical antibiotic drops were initiated, but multiple cultures, corneal biopsy, and confocal microscopy were all negative for an infectious agent. Over a 2-week period, the epithelial defects worsened and a suspicion for a toxic etiology was raised. The patient later recalled rubbing his eyes after exposure to Epipremnum aureum (Golden Pothos/Devils Ivy) sap. He was thus treated conservatively with artificial tears, topical corticosteroids, and amniotic membrane. After 3 months, the epithelial defects resolved, but with corneal scarring, prominently in the left eye and underwent penetrating keratoplasty. Five years after presentation, best-corrected visual acuity with hard contact lenses was 20/25 in the right eye and 20/20 in the left eye.

Conclusion:

Epipremnum aureum toxicity is a rare cause of keratitis. It can mimic acanthamoeba keratitis or anesthetic abuse and should be considered in cases of culture negative nonhealing corneal ulcerations. Eliciting a history of plant sap exposure can facilitate appropriate supportive care for this toxic keratitis.
Prevalence of Ocular Surface Disease and Corneal Irregularity and Outcomes in Patients Using Therapeutic Scleral Lenses at a Tertiary Care Center
Authors: Scanzera Angelica C. , Bontu Sneha , Joslin Charlotte E. , McMahon Timothy , Rosenblatt Mark , Shorter Ellen 
Published: December 2019

Objectives:
To describe indications for scleral contact lens (ScCL) evaluation, previous treatments, and outcomes of patients prescribed ScCL at a tertiary referral center.

Methods:
This retrospective study reviewed 133 patients evaluated for ScCL between January 1, 2010, and December 31, 2015, at the University of Illinois at Chicago (UIC) Contact Lens Service. Patient demographics, ocular history, indications for evaluation, previous treatments, presence of punctate epithelial erosions, number of lenses ordered, follow-up visits, best-corrected visual acuity before ScCL, and visual acuity with ScCL were evaluated. Patients were categorized based on primary indication for ScCL evaluation as ocular surface disease (OSD) or corneal irregularity (CI). The primary outcome was visual acuity.

Results:
Visual acuity improved from logarithm of the minimal angle of resolution 0.3±0.4 at presentation to 0.1±0.2 with ScCL in all eyes (n=223, P=0.0001), and from 0.3±0.5 to 0.1±0.2 (n=164, P=0.001) in the OSD group and 0.5±0.4 to 0.2±0.2 (n=59, P=0.0001) in the CI group. Seventy percent of patients were evaluated for bilateral ScCL evaluation. Indication for ScCL evaluation was OSD in 71% (n=95) of patients, with 20% having a secondary diagnosis of CI. Corneal irregularity was the primary diagnosis in 29% of patients (n=38), with 50% having a secondary diagnosis of OSD.

Conclusions:
Ocular surface disease was common in this tertiary referral patient population and was a primary or secondary indication for ScCL evaluation in 85.7% (n=114) of patients evaluated for ScCL. Scleral contact lenses improved visual outcomes in patients with both primary diagnoses of CI and OSD.
Use of molecular HIV surveillance data and predictive modeling to prioritize persons for transmission-reduction interventions
Authors: Xia Qiang , Wertheim Joel O. , Braunstein Sarah L. , Misra Kavita , Udeagu Chi-Chi , Torian Lucia V. 
Published: December 2019

Background:
To develop a predictive model to prioritize persons with a transmissible HIV viral load for transmission-reduction interventions.

Methods:
New York City (NYC) HIV molecular surveillance data from 2010 to 2013 were used to build a model to predict the probability that the partial pol gene of the virus of a person with a transmissible HIV viral load (>1500 copies/ml) would be genetically similar to that of a person with a new HIV infection (diagnosis at stage 0 or 1 according to the revised Centers for Disease Control and Prevention classification system). Data from 2013 to 2016 were then used to validate the model and compare it with five other selection strategies that can be used to prioritize persons for transmission-reduction interventions.

Results:
A total of 10 609 persons living with HIV (PLWH) were included in the development dataset, and 8257 were included in the validation dataset. Among the six selection strategies, the predictive model had the highest area under the receiver operating characteristic curve (AUC) [0.86, 95% confidence interval (CI) 0.84--0.88], followed by the ‘Young MSM’ (0.79, 95% CI 0.77--0.82), ‘MSM with high viral loads’ (0.74, 95% CI 0.72--0.76), ‘Random sample of MSM’ (0.73, 95% CI 0.71--0.76), ‘Persons with high viral loads’ (0.56, 95% CI 0.54--0.59), and ‘Random sample’ (0.50, 95% CI 0.48--0.53) strategies.

Conclusions:
Jurisdictions should consider applying predictive modeling to prioritize persons with a transmissible viral load for transmission-reduction interventions and to evaluate its feasibility and effectiveness.
Custom-Made Three-Dimensional Models for Craniosynostosis
Authors: Bowen Luke , Benech Rodolfo , Shafi Ahad , Gallo Pasquale , Kandasamy Jothy , Kaliaperumal Chandrasekaran , Campbell Duncan F. 
Published: December 2019

Abstract
The use of computer-aided design and computer-aided manufacturing in oral and maxillofacial surgery is an ever-growing field.
The availability of 3D models, cutting guides, and customised surgical instruments gives surgeons the opportunity to modify and improve their surgical procedures.
Here, we discuss the use of computer-aided design-computer-aided manufacturing to improve the management of a case of nonsyndromic metopic synostosis through the construction of: A cutting guide for the cranium, custom-made orbital protectors, a 3D model of the predicted postoperative meninges to allow off the table bone recontouring, and a template frontal bar to allow more specific recontouring of the frontal bar.
IRSp53 shapes the plasma membrane and controls polarized transport at the nascent lumen during epithelial morphogenesis
Authors: Bisi Sara , Rizvi Syed Abrar , Marchesi Stefano , Carra Davide , Beznoussenko Galina V. , Ferrara Ines , Deflorian Gianluca , Mironov Alexander , Bertalot Giovanni , Pisati Federica , Oldani Amanda , Cattaneo Angela , Pece Salvatore , Viale Giuseppe , Bachi Angela , Tripodo Claudio , Scita Giorgio , Disanza Andrea 
Published: December 2019

AbstractEstablishment of apical–basal cell polarity is necessary for generation of luminal and tubular structures during epithelial morphogenesis. Molecules acting at the membrane/ actin interface are expected to be crucial in governing these processes. Here, we show that the I-BAR-containing IRSp53 protein is restricted to the luminal side of epithelial cells of various glandular organs, and is specifically enriched in renal tubules in human, mice, and zebrafish. Using three-dimensional cultures of renal MDCK and intestinal Caco-2 cysts, we show that IRSp53 is recruited early after the first cell division along the forming apical lumen, and is essential for formation of a single lumen and for positioning of the polarity determinants aPKC and podocalyxin. Molecularly, IRSp53 directly binds to and controls localization of the inactive form of the small GTPase RAB35, a tethering factor for apical determinants. The interaction of IRSp53 with the actin capping protein EPS8 is critical for restricting IRSp53 localization. Correlative light and electron microscopy shows that IRSp53 loss perturbs the shape and continuity of the opposing apical membrane during the initial phase of lumenogenesis, which leads to preservation of multiple cytoplasmic bridges that interrupt the continuity of the nascent lumen. At the organism level, genetic removal of IRSp53 results in abnormal renal tubulogenesis, with defects in tubular polarity and architectural organization in both IRSp53 zebrafish mutant lines and IRSp53-KO murine models. Thus, IRSp53 acts as a platform for spatiotemporal regulation of assembly of the multi-protein complexes that shape the luminal membrane during the early steps of epithelial lumen morphogenesis.
Whole genome sequences of 23 species from the Drosophila montium species group (Diptera: Drosophilidae): A resource for testing evolutionary hypotheses
Authors: Bronski Michael J. , Martinez Ciera C. , Weld Holli A. , Eisen Michael B. 
Published: December 2019

AbstractLarge groups of species with well-defined phylogenies are excellent systems for testing evolutionary hypotheses. In this paper, we describe the creation of a comparative genomic resource consisting of 23 genomes from the species-rich Drosophila montium species group, 22 of which are presented here for the first time. The montium group is uniquely positioned for comparative studies. Within the montium clade, evolutionary distances are such that large numbers of sequences can be accurately aligned while also recovering strong signals of divergence; and the distance between the montium group and D. melanogaster is short enough so that orthologous sequence can be readily identified. All genomes were assembled from a single, small-insert library using MaSuRCA, before going through an extensive post-assembly pipeline. Estimated genome sizes within the montium group range from 155 Mb to 223 Mb (mean=196 Mb). The absence of long-distance information during the assembly process resulted in fragmented assemblies, with the scaffold NG50s varying widely based on repeat content and sample heterozygosity (min=18 kb, max=390 kb, mean=74 kb). The total scaffold length for most assemblies is also shorter than the estimated genome size, typically by 5 - 15 %. However, subsequent analysis showed that our assemblies are highly complete. Despite large differences in contiguity, all assemblies contain at least 96 % of known single-copy Dipteran genes (BUSCOs, n=2,799). Similarly, by aligning our assemblies to the D. melanogaster genome and remapping coordinates for a large set of transcriptional enhancers (n=3,457), we showed that each montium assembly contains orthologs for at least 91 % of D. melanogaster enhancers. Importantly, the genic and enhancer contents of our assemblies are comparable to that of far more contiguous Drosophila assemblies. The alignment of our own D. serrata assembly to a previously published PacBio D. serrata assembly also showed that our longest scaffolds (up to 1 Mb) are free of large-scale misassemblies. Our genome assemblies are a valuable resource that can be used to further resolve the montium group phylogeny; study the evolution of protein-coding genes and cis-regulatory sequences; and determine the genetic basis of ecological and behavioral adaptations.
Fibrillar Aβ triggers microglial proteome alterations and dysfunction in Alzheimer mouse models
Authors: Monasor Laura Sebastian , Müller Stephan A. , Colombo Alessio , König Jasmin , Roth Stefan , Liesz Arthur , Berghofer Anna , Saito Takashi , Saido Takaomi C. , Herms Jochen , Willem Michael , Haass Christian , Lichtenthaler Stefan F. , Tahirovic Sabina 
Published: December 2019

AbstractMicroglial dysfunction is a key pathological feature of Alzheimeŕs disease (AD), but little is known about proteome-wide changes in microglia during the course of AD pathogenesis and their functional consequences. Here, we performed an in-depth and time-resolved proteomic characterization of microglia in two mouse models of amyloid β (Aβ) pathology, the overexpression APPPS1 and the knock-in APP-NL-G-F (APP-KI) model. We identified a large panel of Microglial Aβ Response Proteins (MARPs) that reflect a heterogeneity of microglial alterations during early, middle and advanced stages of Aβ deposition. Although both mouse models display severe microglial alterations at late stages of amyloid pathology, MARP signatures occur earlier in the APPPS1 mice. Strikingly, the kinetic differences in proteomic profiles correlated with the presence of fibrillar Aβ, rather than dystrophic neurites, suggesting that fibrillar Aβ aggregates are the main drivers of the AD-associated microglial phenotype and the observed functional decline. The identified microglial proteomic fingerprints of AD provide a valuable resource for functional studies of novel molecular targets and potential biomarkers for monitoring AD progression or therapeutic efficacy.
Sensory neurons contacting the cerebrospinal fluid require the Reissner fiber to detect spinal curvature in vivo
Authors: Orts-Del’Immagine Adeline , Cantaut-Belarif Yasmine , Thouvenin Olivier , Roussel Julian , Baskaran Asha , Langui Dominique , Koëth Fanny , Bivas Paul , Lejeune François-Xavier , Bardet Pierre-Luc , Wyart Claire 
Published: December 2019

SummaryRecent evidence indicate active roles for the cerebrospinal fluid (CSF) on body axis development and morphogenesis of the spine implying CSF-contacting neurons (CSF-cNs) in the spinal cord. CSF-cNs project a ciliated apical extension into the central canal that is enriched in the channel PKD2L1 and enables the detection of spinal curvature in a directional manner. Dorsolateral CSF-cNs ipsilaterally respond to lateral bending while ventral CSF-cNs respond to longitudinal bending. Historically, the implication of the Reissner fiber (RF), a long extracellular thread in the CSF, to CSF-cN sensory functions has remained a subject of debate. Here, we reveal using electron microscopy in zebrafish larvae that the RF is in close vicinity with cilia and microvilli of ventral and dorsolateral CSF-cNs. We investigate in vivo the role of cilia and the Reissner fiber in the mechanosensory functions of CSF-cNs by combining calcium imaging with patch-clamp recordings. We show that disruption of cilia motility affects CSF-cN sensory responses to passive and active curvature of the spinal cord without affecting the Pkd2l1 channel activity. Since ciliary defects alter the formation of the Reissner fiber, we investigated whether the Reissner fiber contributes to CSF-cN mechanosensitivity in vivo. Using a hypomorphic mutation in the scospondin gene that forbids the aggregation of SCO-spondin into a fiber, we demonstrate in vivo that the Reissner fiber per se is critical for CSF-cN mechanosensory function. Our study uncovers that neurons contacting the cerebrospinal fluid functionally interact with the Reissner fiber to detect spinal curvature in the vertebrate spinal cord.Abstract FigureeToCThe role of the Reissner fiber, a long extracellular thread running in the cerebrospinal fluid (CSF), has been since its discovery in 1860 a subject of debate. Orts-Del’Immagine et al. report that the Reissner fiber plays a critical role in the detection of spinal curvature by sensory neurons contacting the CSF.HighlightsSince its discovery, the role of the Reissner fiber has long been a subject of debateMechanoreception in CSF-contacting neurons (CSF-cNs) in vivo requires the Reissner fiberCSF-cN apical extension is in close vicinity of the Reissner fiberCSF-cNs and the Reissner fiber form in vivo a sensory organ detecting spinal curvature