bluuebunny/crossref_metadata_2025_split huggingface dataset:
Levels of Polonium-210 in brain and pulmonary tissues: Preliminary study in autopsies conducted in the city of Sao Paulo, Brazil
Authors: Santos Nathalia Villa dos , Vieira Carolina Leticia Zilli , Saldiva Paulo Hilario Nascimento , Paci Mazzilli Barbara , Saiki Mitiko , Saueia Catia Heloisa , De André Carmen Diva Saldiva , Justo Lisie Tocci , Nisti Marcelo Bessa , Koutrakis Petros 
Published: January 2020

AbstractThe accumulation of detectable amounts of radon progeny in human tissues may be a risk factor for development and progression of chronic diseases. In this preliminary study, we analyzed the levels of alpha-emitting radon progeny Polonium-210 (210Po) in the olfactory epithelium, olfactory bulb, frontal lobe, and lung tissues in cadavers from the city of Sao Paulo, SP, Brazil. We also assessed the association between 210Po levels and exposure parameters for urban air pollution using linear regression models adjusted for age, sex, smoke, time living in Sao Paulo, daily commuting, socioeconomic index, and anthracosis (traffic-related black carbon accumulation in the pleural region and in lymph). Our findings show that the concentration of 210Po was associated with anthracosis in lungs of non-smokers (coefficient = 6.0; standard error = 2.9; p = 0.04). Individuals with lower socioeconomic status also had significantly higher 210Po levels in lungs (coefficient = −1.19; standard error = 0.58; p = 0.042). The olfactory bulb had higher 210Po levels than either olfactory epithelium (p = 0.071), frontal lobe (p < 0.001), or lungs (p = 0.037). Our findings of the deposition of 210Po in autopsy tissues suggest that airborne radionuclides may contribute to the development of chronic diseases, including neurodegenerative diseases.
Transfer Learning in ECG Classification from Human to Horse Using a Novel Parallel Neural Network Architecture
Authors: Van Steenkiste Glenn , van Loon Gunther , Crevecoeur Guillaume 
Published: January 2020

AbstractAutomatic or semi-automatic analysis of the equine electrocardiogram (eECG) is currently not possible because human or small animal ECG analysis software is unreliable due to a different ECG morphology in horses resulting from a different cardiac innervation. Both filtering, beat detection to classification for eECGs are currently poorly or not described in the literature. There are also no public databases available for eECGs as is the case for human ECGs. In this paper we propose the use of wavelet transforms for both filtering and QRS detection in eECGs. In addition, we propose a novel robust deep neural network using a parallel convolutional neural network architecture for ECG beat classification. The network was trained and tested using both the MIT-BIH arrhythmia and an own made eECG dataset with 26.440 beats on 4 classes: normal, premature ventricular contraction, premature atrial contraction and noise. The network was optimized using a genetic algorithm and an accuracy of 97.7% and 92.6% was achieved for the MIT-BIH and eECG database respectively. Afterwards, transfer learning from the MIT-BIH dataset to the eECG database was applied after which the average accuracy, recall, positive predictive value and F1 score of the network increased with an accuracy of 97.1%.
Exploring computed tomography in ichnological analysis of cores from modern marine sediments
Authors: Dorador Javier , Rodríguez-Tovar Francisco J. , Titschack Jürgen 
Published: January 2020

AbstractIchnological analysis is considered a very useful tool in several disciplines of Earth Sciences, including palaeoenvironmental studies and hydrocarbon exploration. Sediment cores provide excellent records, despite difficulties encountered during study runs due to specific core features. Previous studies using 2D images have proven the benefits of high-resolution image treatment in improving the visibility of ichnological features, but with limitations. 3D computed tomography (CT) techniques were applied to palaeoichnological studies in lithified cores and other disciplines of palaeontology to solve these limitations, but not used for ichnological studies in unconsolidated sediments due to the low density contrast between host sediment and trace fossils. In this study, a CT processing technique, previously tested in coral research, is applied to facilitate the characterisation of the ichnological signature of cores from modern marine soft sediments. This technique allows for the first time the isolation of burrows within these kinds of sediments and the differentiation of intervals based on burrow orientation. Data obtained from the technique are complemented with the ichnological information from conventional core description, thus providing a more complete characterisation of the trace fossil assemblage with additional ichnological properties such as burrow orientation and branching. This will improve palaeoenvironmental interpretations related to changes in energy or oxygenation, and the analysis of reservoir quality given the impact of burrows on porosity and permeability. Therefore, adopting CT to complement visual core description in the ichnological analysis of soft modern marine cores is a very informative approach.
Serial examination of cardiac function and perfusion in growing rats using SPECT/CT for small animals
Authors: Hiromasa Tomo , Taki Junichi , Wakabayashi Hiroshi , Inaki Anri , Okuda Koichi , Shibutani Takayuki , Shiba Kazuhiro , Kinuya Seigo 
Published: January 2020

AbstractFew studies have evaluated myocardial perfusion and ventricular function in normal, growing rats. We, therefore, evaluated serial changes in cardiac perfusion and function during the growth of normal rats using single photon emission computed tomography (SPECT) with technetium (99mTc)-sestamibi. Gated SPECT was serially performed in six normal rats. The left ventricular end-diastolic volume (EDV), end-systolic volume (ESV), stroke volume (SV) and ejection fraction (EF) were calculated with Quantitative Gated SPECT software. The perfusion distribution was calculated as the percentage uptake of each of the 17 segments using Quantitative Perfusion SPECT software. As expected, the body weight (BW) of the rats increased with growth, but their heart rates (HR) did not change over time. EF decreased very slowly over time and showed a negative correlation with BW. EDV, ESV and SV showed strong positive correlations with BW. There were no significant differences in the percentage segmental uptake in 13 of the 17 segments during growth, except for three basal and one apical segments. Therefore, a single normal database could be applied for the evaluation of perfusion abnormalities in rats of at least 8 to 28 weeks old.
Anosmin-1 activates vascular endothelial growth factor receptor and its related signaling pathway for olfactory bulb angiogenesis
Authors: Matsushima Shoko , Shimizu Akio , Kondo Manami , Asano Hirotsugu , Ueno Nobuhiro , Nakayama Hironao , Sato Naoko , Komeno Masahiro , Ogita Hisakazu , Kurokawa-Seo Misuzu 
Published: January 2020

AbstractAnosmin-1 is a secreted glycoprotein encoded by the ANOS1 gene, and its loss of function causes Kallmann syndrome (KS), which is characterized by anosmia and hypogonadism due to olfactory bulb (OB) dysfunction. However, the physiological function of anosmin-1 remains to be elucidated. In KS, disordered angiogenesis is observed in OB, resulting in its hypoplasia. In this study, we examined the involvement of anosmin-1 in angiogenic processes. Anosmin-1 was detected on the vessel-like structure in OB of chick embryos, and promoted the outgrowth of vascular sprouts as shown by assays of OB tissue culture. Cell migration, proliferation, and tube formation of endothelial cells were induced by treatment with anosmin-1 as well as vascular endothelial growth factor-A (VEGF-A), and further enhanced by treatment with both of them. We newly identified that anosmin-1 activated VEGF receptor-2 (VEGFR2) by binding directly to it, and its downstream signaling molecules, phospholipase Cγ1 (PLCγ1) and protein kinase C (PKC). These results suggest that anosmin-1 plays a key role in the angiogenesis of developing OB through the VEGFR2–PLCγ1–PKC axis by enhancing the VEGF function.
A thirteen-million-year divergence between two lineages of Indonesian coelacanths
Authors: Kadarusman  , Sugeha Hagi Yulia , Pouyaud Laurent , Hocdé Régis , Hismayasari Intanurfemi B. , Gunaisah Endang , Widiarto Santoso B. , Arafat Gulam , Widyasari Ferliana , Mouillot David , Paradis Emmanuel 
Published: January 2020

AbstractCoelacanth fishes of the genus Latimeria are the only surviving representatives of a basal lineage of vertebrates that originated more than 400 million years ago. Yet, much remains to be unveiled about the diversity and evolutionary history of these ‘living fossils’ using new molecular data, including the possibility of ‘cryptic’ species or unknown lineages. Here, we report the discovery of a new specimen in eastern Indonesia allegedly belonging to the species L. menadoensis. Although this specimen was found about 750 km from the known geographical distribution of the species, we found that the molecular divergence between this specimen and others of L. menadoensis was great: 1.8% compared to 0.04% among individuals of L. chalumnae, the other living species of coelacanth. Molecular dating analyses suggested a divergence date of ca. 13 million years ago between the two populations of Indonesian coelacanths. We elaborate a biogeographical scenario to explain the observed genetic divergence of Indonesian coelacanth populations based on oceanic currents and the tectonic history of the region over Miocene to recent. We hypothesize that several populations of coelacanths are likely to live further east of the present capture location, with potentially a new species that remains to be described. Based on this, we call for an international effort to take appropriate measures to protect these fascinating but vulnerable vertebrates which represent among the longest branches on the Tree of Life.
Sugarcane calcineurin B-like (CBL) genes play important but versatile roles in regulation of responses to biotic and abiotic stresses
Authors: Su Weihua , Huang Long , Ling Hui , Mao Huaying , Huang Ning , Su Yachun , Ren Yongjuan , Wang Dongjiao , Xu Liping , Muhammad Khushi , Que Youxiong 
Published: January 2020

AbstractFree calcium ions are common second messengers in plant cells. The calcineurin B-like protein (CBL) is a special calcium sensor that plays an important role in plant growth and stress response. In this study, we obtained three CBL genes (GenBank accession nos. KX013374, KX013375, and KX013376) from sugarcane variety ROC22. The open reading frames of ScCBL genes ranged from 642 to 678 base pairs in length and encoded polypeptides from 213 to 225 amino acids in length. ScCBL2-1, ScCBL3-1, and ScCBL4 were all located in the plasma membrane and cytoplasm. ScCBL2-1 and ScCBL3-1 expression was up-regulated by treatment with salicylic acid (SA), methyl jasmonate (MeJA), hydrogen peroxide (H2O2), polyethylene glycol (PEG), sodium chloride (NaCl), or copper chloride (CuCl2). ScCBL4 expression was down-regulated in response to all of these stresses (abscisic acid (ABA), SA, MeJA, and NaCl) except for H2O2, calcium chloride (CaCl2), PEG, and CuCl2. Expression in Escherichia coli BL21 cells showed that ScCBLs can enhance tolerance to NaCl or copper stress. Overexpression of ScCBLs in Nicotiana benthamiana leaves promoted their resistance to infection with the tobacco pathogen Ralstonia solanacearum. The results from the present study facilitate further research regarding ScCBL genes, and in particular, their roles in the response to various stresses in sugarcane.
Fish Feed Quality Is a Key Factor in Impacting Aquaculture Water Environment: Evidence from Incubator Experiments
Authors: Kong Wenwen , Huang Suiliang , Yang Zhenjiang , Shi Feifei , Feng Yibei , Khatoon Zobia 
Published: January 2020

AbstractThe effect of fish feed quality has gained increasing attention to alleviate the harmful environmental impacts induced by intensive aquaculture. In current research, we have conducted an incubator experiment to highlight the effect of fish feed quality on aquaculture water environment. Fish feed from three manufactures with two different dosages (0.1000 g, 0.2000 g) was added to the culture medium with and without Microcystis aeruginosa. Treatments with Microcystis aeruginosa were named as MHT, MHP and MZT; while the treatments without Microcystis aeruginosa named as HT, HP and ZT. Microcystis aeruginosa densities and nutrients concentrations were measured in the study. Results have shown that fish feed quality (manufactures) has a great effect on nutrients concentrations in the absence of Microcystis aeruginosa (P < 0.05). Meanwhile, fish feed can stimulate Microcystis aeruginosa growth that is also influenced by fish feed quality excluding lag phase (0~12 day) significantly in general (P < 0.05). The maximum Microcystis aeruginosa density (Nmax) is 1221.5, 984.5, 581.0, 2265.9, 2056.8 and 1766.6 1 × 104 cells mL−1 for MHT 0.1 g, MHP 0.1 g, MZT 0.1 g, MHT 0.2 g, MHP 0.2 g and MZT 0.2 g, respectively. In treatments with algae, fish feed quality affect total phosphorus (TP) concentrations (except the difference between MHT and MHP) and total nitrogen (TN) concentrations significantly (P < 0.05). For most of consumed nutrients, the obvious differences among all treatments were observed excluding lag phase in general (P < 0.05), which suggest that the nutrient utilization is also dependent on fish feed quality. Keeping in mind the above facts it is concluded that fish feed quality is a key factor in impacting aquaculture water environment.
Flexible loop and helix 2 domains of TCTP are the functional domains of dimerized TCTP
Authors: Lee Heewon , Kim Mi-Sun , Lee Ji-Sun , Cho Hyunsoo , Park Jimin , Hae Shin Dong , Lee Kyunglim 
Published: January 2020

AbstractTranslationally controlled tumor protein (TCTP), also called histamine releasing factor, is an evolutionarily conserved multifunctional protein in eukaryotes. We previously reported that extracellular TCTP acquires its cytokine-like function following dimerization. This study aims to identify the functional domain involved in the cytokine-like function of dimerized TCTP (dTCTP). We performed X-ray crystallographic studies and a deletion mutant of dTCTP which lacks the flexible loop domain. Synthetic peptides corresponding to TCTP domains and antibodies developed against them were examined for the anti-allergic effect. In an OVA-induced airway inflammation mouse model, inhibitory effect of synthetic peptides was evaluated. dTCTP was mediated by dimers between Cys172s of TCTP monomers. Synthetic peptides corresponding to the flexible loop and helix 2 domain of TCTP, and antibodies against them inhibited dTCTP-induced IL-8 release. In particular, the TCTP mutant lacking the flexible loop domain decreased the inflammatory cytokine activity of dTCTP. We conclude that the flexible loop and helix 2 domain of TCTP are the functional domains of dTCTP. They may have the potential to be therapeutic targets in the suppression of allergic reactions induced by dTCTP.
Impact of local thermal stimulation on the correlation between oxygen saturation and speed-resolved blood perfusion
Authors: Wang Guangjun , Jia Shuyong , Liu Mi , Song Xiaojing , Li Hongyan , Chang Xiaorong , Zhang Weibo 
Published: January 2020

AbstractThe physiologically important relationship between oxygen saturation and blood flow is not entirely understood, particularly with regard to the multiple velocity components of flow and temperature. While our previous studies used classic laser Doppler flowmetry combined with an enhanced perfusion probe to assess local blood flow following thermal stimulation, oxygen saturation signals were not assessed. Thus, the current study used multiscale entropy (MSE) and multiscale fuzzy entropy (MFE) to measure the complexity of oxygen saturation signals following thermal stimulation in healthy subjects. The results indicate that thermal stimulation increases oxygen saturation and affects the measured signal complexity in a temperature-dependent fashion. Furthermore, stimulus temperature not only affects the correlation between speed-resolved blood perfusion and oxygen saturation, but also the correlation between the complexity area indices (CAI) of the two signals. These results reflect the complexity of local regulation and adaptation processes in response to stimuli at different temperatures.
Genome-wide association study identifies novel risk variants from RPS6KA1, CADPS, VARS, and DHX58 for fasting plasma glucose in Arab population
Authors: Hebbar Prashantha , Abu-Farha Mohamed , Alkayal Fadi , Nizam Rasheeba , Elkum Naser , Melhem Motasem , John Sumi Elsa , Channanath Arshad , Abubaker Jehad , Bennakhi Abdullah , Al-Ozairi Ebaa , Tuomilehto Jaakko , Pitkaniemi Janne , Alsmadi Osama , Al-Mulla Fahd , Thanaraj Thangavel Alphonse 
Published: January 2020

AbstractConsanguineous populations of the Arabian Peninsula, which has seen an uncontrolled rise in type 2 diabetes incidence, are underrepresented in global studies on diabetes genetics. We performed a genome-wide association study on the quantitative trait of fasting plasma glucose (FPG) in unrelated Arab individuals from Kuwait (discovery-cohort:n = 1,353; replication-cohort:n = 1,196). Genome-wide genotyping in discovery phase was performed for 632,375 markers from Illumina HumanOmniExpress Beadchip; and top-associating markers were replicated using candidate genotyping. Genetic models based on additive and recessive transmission modes were used in statistical tests for associations in discovery phase, replication phase, and meta-analysis that combines data from both the phases. A genome-wide significant association with high FPG was found at rs1002487 (RPS6KA1) (p-discovery = 1.64E-08, p-replication = 3.71E-04, p-combined = 5.72E-11; β-discovery = 8.315; β-replication = 3.442; β-combined = 6.551). Further, three suggestive associations (p-values < 8.2E-06) with high FPG were observed at rs487321 (CADPS), rs707927 (VARS and 2Kb upstream of VWA7), and rs12600570 (DHX58); the first two markers reached genome-wide significance in the combined analysis (p-combined = 1.83E-12 and 3.07E-09, respectively). Significant interactions of diabetes traits (serum triglycerides, FPG, and glycated hemoglobin) with homeostatic model assessment of insulin resistance were identified for genotypes heterozygous or homozygous for the risk allele. Literature reports support the involvement of these gene loci in type 2 diabetes etiology.
Contrasting seasonal patterns of telomere dynamics in response to environmental conditions in the ectothermic sand lizard, Lacerta agilis
Authors: Axelsson Jannike , Wapstra Erik , Miller Emily , Rollings Nicky , Olsson Mats 
Published: January 2020

AbstractTelomeres, the protective, terminal parts of the chromosomes erode during cell division and as a result of oxidative damage by reactive oxygen species (ROS). Ectotherms rely on the ambient temperature for maintaining temperature-dependent metabolic rate, regulated through behavioural thermoregulation. Their temperature-dependant metabolism, hence also the ROS production, is indirectly regulated through thermoregulation. Consequently, a potential causal chain affecting telomere length and attrition is: temperature (in particular, its deviation from a species-specific optimum) – metabolism - ROS production – anti-oxidation - telomere erosion. We measured telomere length in sand lizards (Lacerta agilis) using qPCR on blood samples from 1998–2006. Effects of climatological parameters (mean temperature and average sunshine hours) in the summer and winter preceding telomere sampling were used as predictors of telomere length in mixed model analysis. During the lizards’ active period (summer), there was a largely negative effect of mean temperature and sun on telomere length, whereas a combined measure of age and size (head length) was positively related to telomere length. During the inactive period of lizards (winter), the results were largely the opposite with a positive relationship between temperature and sunshine hours and telomere length. In all four cases, thermal and age effects on telomere length appeared to be non-linear in the two sexes and seasons, with complex response surface effects on telomere length from combined age and thermal effects.
Quantum information processing with space-division multiplexing optical fibres
Authors: Xavier Guilherme B. , Lima Gustavo 
Published: January 2020

AbstractThe optical fibre is an essential tool for our communication infrastructure since it is the main transmission channel for optical communications. The latest major advance in optical fibre technology is space-division multiplexing, where new fibre designs and components establish multiple co-existing data channels based on light propagation over distinct transverse optical modes. Simultaneously, there have been many recent developments in the field of quantum information processing, with novel protocols and devices in areas such as computing and communication. Here, we review recent results in quantum information based on space-division multiplexing optical fibres, and discuss new possibilities based on this technology.
Immobilized DNA aptamers used as potent attractors for vascular endothelial cell: in vitro study of female rat
Authors: Cha Jung-Joon , Lee Hoyeon , Kim Miyoung , Kang Juyoung , Song Hanlim , Kim Min-Gon , Lee Jong-Hyun 
Published: January 2020

Abstract
Vascular endothelial cells are essential to vascular function and maintenance. Dysfunction of these cells can lead to the development of cardiovascular disease or contribute to tumorigenesis. As such, the therapeutic modulation and monitoring of vascular endothelial cells are of significant clinical interest, and several endothelial-specific ligands have been developed for drug delivery and the monitoring of endothelial function. However, the application of these ligands has been limited by their high cost and tendency to induce immune responses, highlighting a need for alternate methods of targeting vascular endothelial cells. In the present study, we explore the therapeutic potential of DNA aptamers. Using cell-SELEX technology, we identified two aptamers with specific binding affinity for vascular endothelial cells and propose that these molecules show potential for use as new ligands for drug and biomarker research concerning vascular endothelial cells.