bluuebunny/crossref_metadata_2025_split huggingface dataset:
Assessment of the WAP-Myc mouse mammary tumor model for spontaneous metastasis
Authors: Utz Begüm , Turpin Rita , Lampe Johanna , Pouwels Jeroen , Klefström Juha 
Published: October 2020

AbstractBreast cancer is the most common form of cancer in women. Despite significant therapeutic advances in recent years, breast cancer also still causes the greatest number of cancer-related deaths in women, the vast majority of which (> 90%) are caused by metastases. However, very few mouse mammary cancer models exist that faithfully recapitulate the multistep metastatic process in human patients. Here we assessed the suitability of a syngrafting protocol for a Myc-driven mammary tumor model (WAP-Myc) to study autochthonous metastasis. A moderate but robust spontaneous lung metastasis rate of around 25% was attained. In addition, increased T cell infiltration was observed in metastatic tumors compared to donor and syngrafted primary tumors. Thus, the WAP-Myc syngrafting protocol is a suitable tool to study the mechanisms of metastasis in MYC-driven breast cancer.
When a foreign gene meets its native counterpart: computational biophysics analysis of two PgiC loci in the grass Festuca ovina
Authors: Li Yuan , Mohanty Sandipan , Nilsson Daniel , Hansson Bengt , Mao Kangshan , Irbäck Anders 
Published: October 2020

AbstractDuplicative horizontal gene transfer may bring two previously separated homologous genes together, which may raise questions about the interplay between the gene products. One such gene pair is the “native” PgiC1 and “foreign” PgiC2 in the perennial grass Festuca ovina. Both PgiC1 and PgiC2 encode cytosolic phosphoglucose isomerase, a dimeric enzyme whose proper binding is functionally essential. Here, we use biophysical simulations to explore the inter-monomer binding of the two homodimers and the heterodimer that can be produced by PgiC1 and PgiC2 in F. ovina. Using simulated native-state ensembles, we examine the structural properties and binding tightness of the dimers. In addition, we investigate their ability to withstand dissociation when pulled by a force. Our results suggest that the inter-monomer binding is tighter in the PgiC2 than the PgiC1 homodimer, which could explain the more frequent occurrence of the foreign PgiC2 homodimer in dry habitats. We further find that the PgiC1 and PgiC2 monomers are compatible with heterodimer formation; the computed binding tightness is comparable to that of the PgiC1 homodimer. Enhanced homodimer stability and capability of heterodimer formation with PgiC1 are properties of PgiC2 that may contribute to the retaining of the otherwise redundant PgiC2 gene.
Risk of higher dose methotrexate for renal impairment in patients with rheumatoid arthritis
Authors: Hayashi Keigo , Sada Ken-Ei , Asano Yosuke , Asano Sumie Hiramatsu , Yamamura Yuriko , Ohashi Keiji , Morishita Michiko , Watanabe Haruki , Narazaki Mariko , Matsumoto Yoshinori , Wada Jun 
Published: October 2020

AbstractRenal impairment is a major concern in patients taking high-dose methotrexate (MTX) for malignancy, but it has not been fully explored in rheumatoid arthritis (RA) patients taking low-dose MTX. This study aimed to elucidate the dose-dependent effects of MTX on the renal function of patients with RA. We retrospectively reviewed 502 consecutive RA patients who were prescribed MTX for ≥ 1 year at Okayama University Hospital between 2006 and 2018. The primary outcome was the change in estimated glomerular filtration rate (eGFR) over 1 year. The association between MTX dosage (< 8, 8–12, and ≥ 12 mg/week) and the change in eGFR was evaluated using multiple linear regression analysis with adjustment for possible confounding factors including age, sex, disease duration, body weight, comorbidity, baseline eGFR, concomitant treatment, and disease activity. Mean patient age was 63 years; 394 (78%) were female. Median disease duration was 77 months, while mean MTX dosage was 8.6 mg/week. The last 1-year change of eGFR (mean ± SD) in patients treated with MTX < 8 (n = 186), 8–12 (n = 219), ≥ 12 mg/week (n = 97) decreased by 0.2 ± 7.3, 0.6 ± 8.6, and 4.5 ± 7.9 mL/min/1.73 m2/year, respectively (p < 0.0001). After adjustment for the confounding factors, MTX ≥ 12 mg/week was still correlated with a decrease in 1-year eGFR (beta-coefficient: − 2.5; 95% confidence interval, − 4.3 to − 0.6; p = 0.0089) in contrast to MTX 8–12 mg/week. Careful monitoring of renal function is required in patients with MTX ≥ 12 mg/week over the course of RA treatment regardless of disease duration.
Histological evidence for secretory bioluminescence from pectoral pockets of the American Pocket Shark (Mollisquama mississippiensis)
Authors: Claes Julien M. , Delroisse Jérôme , Grace Mark A. , Doosey Michael H. , Duchatelet Laurent , Mallefet Jérôme 
Published: October 2020

AbstractThe function of pocket shark pectoral pockets has puzzled scientists over decades. Here, we show that the pockets of the American Pocket Shark (Mollisquama mississippiensis) contain a brightly fluorescent stratified cubic epithelium enclosed in a pigmented sheath and in close contact with the basal cartilage of the pectoral fins; cells of this epithelium display a centripetal gradient in size and a centrifuge gradient in fluorescence. These results strongly support the idea that pocket shark’s pockets are exocrine holocrine glands capable of discharging a bioluminescent fluid, potentially upon a given movement of the pectoral fin. Such capability has been reported in many other marine organisms and is typically used as a close-range defensive trick. In situ observations would be required to confirm this hypothesis.
ViceCT and whiceCT for simultaneous high-resolution visualization of craniofacial, brain and ventricular anatomy from micro-computed tomography
Authors: Llambrich Sergi , Wouters Jens , Himmelreich Uwe , Dierssen Mara , Sharpe James , Gsell Willy , Martínez-Abadías Neus , Vande Velde Greetje 
Published: October 2020

AbstractUp to 40% of congenital diseases present disturbances of brain and craniofacial development resulting in simultaneous alterations of both systems. Currently, the best available method to preclinically visualize the brain and the bones simultaneously is to co-register micro-magnetic resonance (µMR) and micro-computed tomography (µCT) scans of the same specimen. However, this requires expertise and access to both imaging techniques, dedicated software and post-processing knowhow. To provide a more affordable, reliable and accessible alternative, recent research has focused on optimizing a contrast-enhanced µCT protocol using iodine as contrast agent that delivers brain and bone images from a single scan. However, the available methods still cannot provide the complete visualization of both the brain and whole craniofacial complex. In this study, we have established an optimized protocol to diffuse the contrast into the brain that allows visualizing the brain parenchyma and the complete craniofacial structure in a single ex vivo µCT scan (whiceCT). In addition, we have developed a new technique that allows visualizing the brain ventricles using a bilateral stereotactic injection of iodine-based contrast (viceCT). Finally, we have tested both techniques in a mouse model of Down syndrome, as it is a neurodevelopmental disorder with craniofacial, brain and ventricle defects. The combined use of viceCT and whiceCT provides a complete visualization of the brain and bones with intact craniofacial structure of an adult mouse ex vivo using a single imaging modality.
How the incentive to contribute affects contributions in the one-shot public goods game
Authors: van den Berg Pieter , Dewitte Peter , Aertgeerts Ine , Wenseleers Tom 
Published: October 2020

AbstractEnmeshed in various social structures, humans must often weigh their own interest against the interest of others—including the common interest of groups they belong to. The Public Goods Game (PGG), which succinctly pits individual interest against group interest, has been a staple of research into how people make such decisions. It has been studied in many variations, in the laboratory and (increasingly) online. One of the defining parameters of the PGG is the marginal per capita return of the group project (MPCR), which determines the incentive for contributing to the group project relative to the incentive of keeping points in the personal account. The effect of MPCR on contributions has been investigated before, but its effects have never been characterised with high resolution. Here, we present a systematic and high-resolution investigation of the effect of MPCR in groups of three. We do this in a large-scale online decision making experiment recruiting participants from Amazon Mechanical Turk. Our results provide a fine-grained account of the relationship between incentive to cooperate on the one hand and cooperation on the other, and can help to provide a basis for choosing MPCR magnitudes for future research endeavours using online PGG studies.
Temporal trends of care practices, morbidity, and mortality of extremely preterm infants over 10-years in South Wales, UK
Authors: Boel Lieve , Banerjee Sujoy , Clark Megan , Greenwood Annabel , Sharma Alok , Goel Nitin , Bagga Gautam , Poon Chuen , Odd David , Chakraborty Mallinath 
Published: October 2020

AbstractContemporary outcome data of preterm infants are essential to commission, evaluate and improve healthcare resources and outcomes while also assisting professionals and families in counselling and decision making. We analysed trends in clinical practice, morbidity, and mortality of extremely preterm infants over 10 years in South Wales, UK. This population-based study included live born infants < 28 weeks of gestation in tertiary neonatal units between 01/01/2007 and 31/12/2016. Patient characteristics, clinical practices, mortality, and morbidity were studied until death or discharge home. Temporal trends were examined by adjusted multivariable logistic regression models and expressed as adjusted odds ratios (aOR) with 95% confidence intervals (95% CI). A sensitivity analysis was conducted after excluding infants born at < 24 weeks of gestation. In this population, overall mortality for infants after live birth was 28.2% (267/948). The odds of mortality (aOR 0.93, 95% CI [0.88, 0.99]) and admission to the neonatal unit (0.93 [0.87, 0.98]) significantly decreased over time. Non-invasive ventilation support during stabilisation at birth increased significantly (1.26 [1.15, 1.38]) with corresponding decrease in mechanical ventilation at birth (0.89 [0.81, 0.97]) and following admission (0.80 [0.68–0.96]). Medical treatment for patent ductus arteriosus significantly decreased over the study period (0.90 [0.85, 0.96]). The incidence of major neonatal morbidities remained stable, except for a reduction in late-onset sepsis (0.94 [0.89, 0.99]). Gestation and centre of birth were significant independent factors for several outcomes. The results from our sensitivity analysis were compatible with our main results with the notable exception of death after admission to NICU (0.95 [0.89, 1.01]). There were significant improvements in survival and reduction of late-onset sepsis of extreme preterm infants in South Wales between 2007 and 2016. The sensitivity analysis suggests that some of the temporal changes observed were driven by improved outcomes in the most preterm of infants. Clinical practices related to respiratory support have changed but significant variations in clinical practices and outcomes between centres remain unexplained. The adoption of regional evidence-based clinical guidelines is likely to improve outcomes and reduce variation.
Assessment of the direct quantitation of SARS-CoV-2 by droplet digital PCR
Authors: Deiana Michela , Mori Antonio , Piubelli Chiara , Scarso Salvatore , Favarato Mosè , Pomari Elena 
Published: October 2020

AbstractDroplet digital PCR (ddPCR) is a sensitive and reproducible technology widely used for quantitation of several viruses. The aim of this study was to evaluate the 2019-nCoV CDC ddPCR Triplex Probe Assay (BioRad) performance, comparing the direct quantitation of SARS-CoV-2 on nasopharyngeal swab with the procedure applied to the extracted RNA. Moreover, two widely used swab types were compared (UTM 3 mL and ESwab 1 mL, COPAN). A total of 50 nasopharyngeal swabs (n = 25 UTM 3 mL and n = 25 ESwab 1 mL) from SARS-CoV-2 patients, collected during the pandemic at IRCCS Sacro Cuore Don Calabria Hospital (Veneto Region, North-East Italy), were used for our purpose. After heat inactivation, an aliquot of swab medium was used for the direct quantitation. Then, we compared the direct method with the quantitation performed on the RNA purified from nasopharyngeal swab by automated extraction. We observed that the direct approach achieved generally equal RNA copies compared to the extracted RNA. The results with the direct quantitation were more accurate on ESwab with a sensitivity of 93.33% [95% CI, 68.05 to 99.83] and specificity of 100.00% for both N1 and N2. On the other hand, on UTM we observed a higher rate of discordant results for N1 and N2. The human internal amplification control (RPP30) showed 100% of both sensitivity and specificity independent of swabs and approaches. In conclusion, we described a direct quantitation of SARS-CoV-2 in nasopharyngeal swab. Our approach resulted in an efficient quantitation, without automated RNA extraction and purification. However, special care needs to be taken on the potential bias due to the conservation of samples and to the heating treatment, as we used thawed and heat inactivated material. Further studies on a larger cohort of samples are warranted to evaluate the clinical value of this direct approach.
Histological changes in human skin 32 days after death and the potential forensic significance
Authors: Wei Wang , Michu Qi , Wenjuan Dong , Jianrong Wen , Zhibing Han , Ming Yang , Bo Jin , Xia Lin 
Published: October 2020

AbstractTo observe the histological changes in human skin within 32 days after death to explore its potential significance in forensic practice. The intact full-thickness skin and subcutaneous tissue from the sternum of eight corpses were placed in an environment of 4–6 °C for 4 h, 6 h, 12 h, 18 h, 24 h, 36 h, 48 h, 60 h, 72 h, 84 h, 96 h, 6 d, 8 d, 10 d, 12 d, 16 d, 20 d, 24 d, 28 d, and 32 d. Then, the whole layer of the skin was stained with haematoxylin & eosin. The histological morphology of the epidermis, dermis and appendages (sweat glands, hair follicles, and sebaceous glands) was observed under an light microscope. The epithelial nucleus condensed at 24 h after death, and cell lysis was exhausted after 20 days. The post-mortem changes in the dermis occurred later than that of the epidermis (72 h), but after epidermal changes started, the change was more rapid. At 16 d, the layers had become homogenized. The epidermis and dermis had completely separated 24 d after death. The changes in the sweat glands appeared earlier (24 h) and disappeared later (32 days); the sebaceous glands and hair follicles began to undergo degenerative changes at 96 h after death, and at approximately 20 d, only their contour remained. There were individual and structural differences in the post-mortem histological changes in the skin. At 4–6 °C ambient temperature, some structures of the human skin still exist for a long time after death, and these structures can be used to identify the source of the tissue; post-mortem histological changes in the skin occur at specific times, which can be used to help infer the time of death. A comprehensive observation of changes in the skin composition/structure is required to comprehensively analyse possible death times.
Performance and clinical utility of supervised machine-learning approaches in detecting familial hypercholesterolaemia in primary care
Authors: Akyea Ralph K. , Qureshi Nadeem , Kai Joe , Weng Stephen F. 
Published: October 2020

AbstractFamilial hypercholesterolaemia (FH) is a common inherited disorder, causing lifelong elevated low-density lipoprotein cholesterol (LDL-C). Most individuals with FH remain undiagnosed, precluding opportunities to prevent premature heart disease and death. Some machine-learning approaches improve detection of FH in electronic health records, though clinical impact is under-explored. We assessed performance of an array of machine-learning approaches for enhancing detection of FH, and their clinical utility, within a large primary care population. A retrospective cohort study was done using routine primary care clinical records of 4,027,775 individuals from the United Kingdom with total cholesterol measured from 1 January 1999 to 25 June 2019. Predictive accuracy of five common machine-learning algorithms (logistic regression, random forest, gradient boosting machines, neural networks and ensemble learning) were assessed for detecting FH. Predictive accuracy was assessed by area under the receiver operating curves (AUC) and expected vs observed calibration slope; with clinical utility assessed by expected case-review workload and likelihood ratios. There were 7928 incident diagnoses of FH. In addition to known clinical features of FH (raised total cholesterol or LDL-C and family history of premature coronary heart disease), machine-learning (ML) algorithms identified features such as raised triglycerides which reduced the likelihood of FH. Apart from logistic regression (AUC, 0.81), all four other ML approaches had similarly high predictive accuracy (AUC > 0.89). Calibration slope ranged from 0.997 for gradient boosting machines to 1.857 for logistic regression. Among those screened, high probability cases requiring clinical review varied from 0.73% using ensemble learning to 10.16% using deep learning, but with positive predictive values of 15.5% and 2.8% respectively. Ensemble learning exhibited a dominant positive likelihood ratio (45.5) compared to all other ML models (7.0–14.4). Machine-learning models show similar high accuracy in detecting FH, offering opportunities to increase diagnosis. However, the clinical case-finding workload required for yield of cases will differ substantially between models.
Fatty-acid-induced FABP5/HIF-1 reprograms lipid metabolism and enhances the proliferation of liver cancer cells
Authors: Seo Jieun , Jeong Do-Won , Park Jong-Wan , Lee Kwang-Woong , Fukuda Junji , Chun Yang-Sook 
Published: October 2020

AbstractHypoxia-inducible factor-1 alpha (HIF-1α) is a transcription factor essential for cancer cell survival. The reprogramming of lipid metabolism has emerged as a hallmark of cancer, yet the relevance of HIF-1α to this process remains elusive. In this study, we profile HIF-1α-interacting proteins using proteomics analysis and identify fatty acid-binding protein 5 (FABP5) as a critical HIF-1α-binding partner. In hepatocellular carcinoma (HCC) tissues, both FABP5 and HIF-1α are upregulated, and their expression levels are associated with poor prognosis. FABP5 enhances HIF-1α activity by promoting HIF-1α synthesis while disrupting FIH/HIF-1α interaction at the same time. Oleic-acid treatment activates the FABP5/HIF-1α axis, thereby promoting lipid accumulation and cell proliferation in HCC cells. Our results indicate that fatty-acid-induced FABP5 upregulation drives HCC progression through HIF-1-driven lipid metabolism reprogramming.
Large electromechanical strain and unconventional domain switching near phase convergence in a Pb-free ferroelectric
Authors: Venkateshwarlu Sarangi , Venkataraman Lalitha K. , Segouin Valentin , Marlton Frederick P. , Hin Ho Chin , Chernyshov Dmitry , Ren Yang , Jørgensen Mads R. V. , Nayak Sanjib , Rödel Jürgen , Daniel Laurent , Pramanick Abhijit 
Published: October 2020

AbstractIn many ferroelectrics, large electromechanical strains are observed near regions of composition- or temperature- driven phase coexistence. Phenomenologically, this is attributed to easy re-orientation of the polarization vector and/or phase transition, although their effects are highly convoluted and difficult to distinguish experimentally. Here, we used synchrotron X-ray scattering and digital image correlation to differentiate between the microscopic mechanisms leading to large electrostrains in an exemplary Pb-free piezoceramic Sn-doped barium calcium zirconate titanate. Large electrostrains of ~0.2% measured at room-temperature are attributed to an unconventional effect, wherein polarization switching is aided by a reversible phase transition near the tetragonal-orthorhombic phase boundary. Additionally, electrostrains of ~0.1% or more could be maintained from room temperature to 140 °C due to a succession of different microscopic mechanisms. In situ X-ray diffraction elucidates that while 90° domain reorientation is pertinent below the Curie temperature (TC), isotropic distortion of polar clusters is the dominant mechanism above TC.
A topology of coupled inductor DC–DC converter with large conversion ratio and reduced voltage stress on semiconductors
Authors: Eskandarpour Azizkandi Mahmoodreza , Sedaghati Farzad , Babaei Ebrahim 
Published: October 2020

This study presents a high boost DC–DC converter, integrates voltage multiplier cell, voltage lift capacitor, and coupled‐inductor techniques to achieve a high‐voltage gain. The proposed topology has the capability of extension without utilising any additional winding for a very large voltage conversion ratio. With utilising a passive clamp circuit and without requiring higher duty cycle values, the suggested converter obtains a large conversion ratio, low conduction losses, and reduced voltage stress of semiconductors with a steady value for the whole range of duty cycle. The converter operation principle is discussed and its steady‐state operation is analysed in detail. Also, theoretic efficiency calculation and design guidelines of the topology are explained. Then, the proposed DC–DC converter is compared with similar configurations to indicate its advantages. Eventually, the validity of theoretic analysis is verified using experimental measurement results of the implemented prototype with a power rating of 226 W.
Square‐root cubature Kalman filter‐based vector tracking algorithm in GPS signal harsh environments
Authors: Wang Huibin , Cheng Yongmei , Zhang Youmin 
Published: October 2020

In a vector tracking loop (VTL) architecture, non‐linearities exist in discriminator functions and pseudo‐range/pseudo‐range rate measurement expressions. Generally, normalisation functions are used in discriminators to export the desired code phase or carrier frequency error and the extended Kalman filter is adopted to estimate receiver's states. This process could be accurate enough when the code phase or carrier frequency error approaches zero in the signal moderate environment but begins to distort due to non‐linearity when the tracking errors become large in harsh situations. This finally narrows the applicable range of VTL. To overcome this issue, a square‐root cubature Kalman filter (CKF)‐based VTL is designed in this study. The discriminator functions are employed directly as measurements of navigation filter, and the non‐linear expressions of discriminator functions in terms of the receiver's position, velocity, and time states are derived without normalisation. Then the CKF, which is competitive in high‐dimensional non‐linear systems, is employed in its square‐root version to estimate the position, velocity, acceleration, and time states of the receiver. Comparison trial results between traditional and proposed VTL illustrate that the proposed algorithm can not only keep a superior tracking accuracy but also improves the tracking stability of VTL in <20 dB‐Hz signal harsh circumstances.