bluuebunny/crossref_metadata_2025_split huggingface dataset:
Genassemblage 2.0 software facilitates conservation of genetic variation of captively propagated species
Authors: Kaczmarczyk Dariusz , Wolnicki Jacek 
Published: October 2020

AbstractIn conservation of captively propagated species, conserving genetic diversity is important. Here, we present an example of the use of Genassemblage 2.0 software in conserving the genetic variation of the lake minnow (Eupallasella percnurus). This fish has low genetic variation and is at risk of extinction in the western edge of its range, which includes Poland. Fish from one Polish population were captured (23 males, 25 females). Fin clips were taken, and DNA was extracted. Polymorphic microsatellites (13) were used to prepare genetic profiles, assess genetic variation in the fish and estimate genetic diversity in their progeny. Alleles were scored using an automatic capillary sequencer. The four and eight best variants of spawning pairs, and the optimal sets for group volitional breeding (four males, four females; eight males, eight females) were identified using Genassemblage 2.0. In the sets of 8 and 16 fish for group breeding, the mean heterozygosity, the number of alleles, and the share of “weak” heterozygotes (0.493, 24, 0.239 and 0.479, 23, 0.257, respectively) were better than the mean values for the progeny of all potential breeding pairs. For group volitional breeding, one set of four males and four females, and numerous sets of eight males and eight females would enable transmission of all 33 alleles identified in the potential broodstock and an expected progeny heterozygosity of 0.441 and 0.414, respectively. These expected heterozygosity values are higher than those in the broodstock. For practical purposes, the larger sets would be preferable for avoiding a future inbreeding and genetic drift.
ENSO diversity driving low-frequency change in mesoscale activity off Peru and Chile
Authors: Conejero Carlos , Dewitte Boris , Garçon Véronique , Sudre Joël , Montes Ivonne 
Published: October 2020

AbstractTransient mesoscale oceanic eddies in Eastern Boundary Upwelling Systems are thought to strongly affect key regional scale processes such as ocean heat transport, coastal upwelling and productivity. Understanding how these can be modulated at low-frequency is thus critical to infer their role in the climate system. Here we use 26 years of satellite altimeter data and regional oceanic modeling to investigate the modulation of eddy kinetic energy (EKE) off Peru and Chile by ENSO, the main mode of natural variability in the tropical Pacific. We show that EKE tends to increase during strong Eastern Pacific (EP) El Niño events along the Peruvian coast up to northern Chile and decreases off central Chile, while it is hardly changed during Central Pacific El Niño and La Niña events. However the magnitude of the EKE changes during strong EP El Niño events is not proportional to their strength, with in particular the 1972/1973 El Niño event standing out as an extreme event in terms of EKE increase off Peru reaching an amplitude three times as large as that during the 1997/1998 El Niño event, and the 2015/2016 El Niño having instead a weak impact on EKE. This produces decadal changes in EKE, with a similar pattern than that of strong EP El Niño events, resulting in a significant negative (positive) long-term trend off Peru (central Chile).
Electrophysiological correlates of the brain-derived neurotrophic factor (BDNF) Val66Met polymorphism
Authors: Roy Nikita , Barry Robert J. , Fernandez Francesca E. , Lim Chai K. , Al-Dabbas Mahmoud A. , Karamacoska Diana , Broyd Samantha J. , Solowij Nadia , Chiu Christine L. , Steiner Genevieve Z. 
Published: October 2020

AbstractThe brain-derived neurotrophic factor (BDNF) protein is essential for neuronal development. Val66Met (rs6265) is a functional polymorphism at codon 66 of the BDNF gene that affects neuroplasticity and has been associated with cognition, brain structure and function. The aim of this study was to clarify the relationship between BDNF Val66Met polymorphism and neuronal oscillatory activity, using the electroencephalogram (EEG), in a normative cohort. Neurotypical (N = 92) young adults were genotyped for the BDNF Val66Met polymorphism and had eyes open resting-state EEG recorded for four minutes. Focal increases in right fronto-parietal delta, and decreases in alpha-1 and right hemispheric alpha-2 amplitudes were observed for the Met/Met genotype group compared to Val/Val and Val/Met groups. Stronger frontal topographies were demonstrated for beta-1 and beta-2 in the Val/Met group versus the Val/Val group. Findings highlight BDNF Val66Met genotypic differences in EEG spectral amplitudes, with increased cortical excitability implications for Met allele carriers.
Inhibition of NLRP3 inflammasome by MCC950 improves the metabolic outcome of islet transplantation by suppressing IL-1β and islet cellular death
Authors: Matsuoka Taisuke , Yoshimatsu Gumpei , Sakata Naoaki , Kawakami Ryo , Tanaka Tomoko , Yamada Teppei , Yoshida Yoichiro , Hasegawa Suguru , Kodama Shohta 
Published: October 2020

AbstractEarly rejection is a critical issue to be overcome to achieve successful islet transplantation. NLRP3 inflammasome is a protein complex that mediates the maturation of pro-interleukin (IL)-1β and pro-IL-18 to IL-1β and IL-18, respectively, which induce cellular death. Here, we investigated the impact of NLRP3 inflammasome and the effect of its inhibition by MCC950 in a rodent model of islet transplantation. We assessed the therapeutic effects of MCC950, a specific inhibitor of NLRP3 inflammasome, on gene expression, islet survival ratio and viability, and islet transplantation in mice. NLRP3 inflammasome-related gene (Nlrp3 and Il1b) expression was upregulated in islets stimulated with proinflammatory cytokines and suppressed when incubated with MCC950. Survival ratio and viability of incubated islets were reduced by cytokine stimulation and improved by MCC950. Regarding islet transplantation, the number of apoptotic cells in transplanted islets was reduced by MCC950. Furthermore, the expression of IL-1β in transplanted islets, migration of macrophages around islets, and fluctuation of blood glucose levels were suppressed by MCC950. Our study revealed that NLRP3 inflammasome worsened the therapeutic outcomes of islet transplantation and that MCC950 administration improved glycaemic control in syngeneic mice that underwent islet transplantation by inhibiting inflammation, which suppressed islet death.
Newly established gastrointestinal cancer cell lines retain the genomic and immunophenotypic landscape of their parental cancers
Authors: Hirsch Daniela , Seyfried Steffen , Staib Tobias , Fiedler David , Sauer Christian , Ried Thomas , Witt Stephanie , Rueckert Felix , Gaiser Timo 
Published: October 2020

AbstractHuman cancer cell lines are frequently used as model systems to study molecular mechanisms and genetic changes in cancer. However, the model is repeatedly criticized for its lack of proximity to original patient tumors. Therefore, understanding to what extent cell lines cultured under artificial conditions reflect the phenotypic and genomic profiles of their corresponding parental tumors is crucial when analyzing their biological properties. To directly compare molecular alterations between patient tumors and derived cell lines, we have established new cancer cell lines from four patients with gastrointestinal tumors. Tumor entities comprised esophageal cancer, colon cancer, rectal cancer and pancreatic cancer. Phenotype and genotype of both patient tumors and derived low-passage cell lines were characterized by immunohistochemistry (22 different antibodies), array-based comparative genomic hybridization and targeted next generation sequencing (48-gene panel). The immunophenotype was highly consistent between patient tumors and derived cell lines; the expression of most markers in cell lines was concordant with the respective parental tumor and characteristic for the respective tumor entities in general. The chromosomal aberration patterns of the parental tumors were largely maintained in the cell lines and the distribution of gains and losses was typical for the respective cancer entity, despite a few distinct differences. Cancer gene mutations (e.g., KRAS, TP53) and microsatellite status were also preserved in the respective cell line derivates. In conclusion, the four examined newly established cell lines exhibited a phenotype and genotype closely recapitulating their parental tumor. Hence, newly established cancer cell lines may be useful models for further pharmacogenomic studies.
Effects of temperature variability and extremes on spring phenology across the contiguous United States from 1982 to 2016
Authors: Liu Lingling , Zhang Xiaoyang 
Published: October 2020

AbstractWarming climate and its impact on vegetation phenological trends have been widely investigated. However, interannual variability in temperature is considerably large in recent decades, which is expected to trigger an increasing trend of variation in vegetation phenology. To explore the interannual phenological variation across the contiguous United States (CONUS), we first detected the onset of vegetation greenup using the time series of the daily two-band Enhanced Vegetation Index (EVI2) observed from the AVHRR Long-Term Data Record (1982–1999) and the MODIS Climate Modeling Grid (2000–2016). We then calculated the interannual variation in greenup onset during four decadal periods: 1982–1989, 1990–1999, 2000–2009 and 2010–2016. Further, the trend of interannual variation in greenup onset from 1982 to 2016 was analyzed at pixel and state levels. Extreme phenological events were also determined using a greenup onset anomaly for each pixel. Similar approaches were applied to spring temperatures to detect extreme years and to the temporal trend of interannual variation to explain the phenological variation. The results revealed that 62% of pixels show an increasing interannual variation in greenup onset, and in 44% of pixels, this variation could be explained by the temperature. Although extreme phenology occurred locally in different years, three nationwide extreme phenological years were distinguished. The extreme warm spring that occurred in 2012 resulted in the occurrence of greenup onset as much as 20 days earlier than normal in large parts of the CONUS. In contrast, greenup onset was much later (up to 30 days) in 1983 and 1996 due to cool spring temperatures. These findings suggest that interannual variation in spring phenology could be much stronger in the future in response to climate variation, which could have more significant impacts on terrestrial ecosystems than the regular long-term phenological trend.
Pre-movement changes in sensorimotor beta oscillations predict motor adaptation drive
Authors: Darch Henry T. , Cerminara Nadia L. , Gilchrist Iain D. , Apps Richard 
Published: October 2020

AbstractBeta frequency oscillations in scalp electroencephalography (EEG) recordings over the primary motor cortex have been associated with the preparation and execution of voluntary movements. Here, we test whether changes in beta frequency are related to the preparation of adapted movements in human, and whether such effects generalise to other species (cat). Eleven healthy adult humans performed a joystick visuomotor adaptation task. Beta (15–25 Hz) scalp EEG signals recorded over the motor cortex during a pre-movement preparatory phase were, on average, significantly reduced in amplitude during early adaptation trials compared to baseline, late adaptation, or aftereffect trials. The changes in beta were not related to measurements of reaction time or reach duration. We also recorded local field potential (LFP) activity within the primary motor cortex of three cats during a prism visuomotor adaptation task. Analysis of these signals revealed similar reductions in motor cortical LFP beta frequencies during early adaptation. This effect was present when controlling for any influence of the reaction time and reach duration. Overall, the results are consistent with a reduction in pre-movement beta oscillations predicting an increase in adaptive drive in upcoming task performance when motor errors are largest in magnitude and the rate of adaptation is greatest.
Alterations in the mucosal immune system by a chronic exhausting exercise in Wistar rats
Authors: Ruiz-Iglesias Patricia , Estruel-Amades Sheila , Camps-Bossacoma Mariona , Massot-Cladera Malén , Castell Margarida , Pérez-Cano Francisco J. 
Published: October 2020

AbstractExhausting exercise can disturb immune and gastrointestinal functions. Nevertheless, the impact of it on mucosal-associated lymphoid tissue has not been studied in depth. Here, we aim to establish the effects of an intensive training and exhausting exercise on the mucosal immunity of rats and to approach the mechanisms involved. Rats were submitted to a high-intensity training consisting of running in a treadmill 5 days per week for 5 weeks, involving 2 weekly exhaustion tests. At the end, samples were obtained before (T), immediately after (TE) and 24 h after (TE24) an additional final exhaustion test. The training programme reduced the salivary production of immunoglobulin A, impaired the tight junction proteins’ gene expression and modified the mesenteric lymph node lymphocyte composition and function, increasing the ratio between Tαβ+ and B lymphocytes, reducing their proliferation capacity and enhancing their interferon-γ secretion. As a consequence of the final exhaustion test, the caecal IgA content increased, while it impaired the gut zonula occludens expression and enhanced the interleukin-2 and interferon-γ secretion. Our results indicate that intensive training for 5 weeks followed or not by an additional exhaustion disrupts the mucosal-associated lymphoid tissue and the intestinal epithelial barrier integrity in rats.
MicroRNA-941 regulates the proliferation of breast cancer cells by altering histone H3 Ser 10 phosphorylation
Authors: Surapaneni Sunil Kumar , Bhat Zahid Rafiq , Tikoo Kulbhushan 
Published: October 2020

AbstractBreast cancer including triple negative breast cancer (TNBC) represents an important clinical challenge, as these tumours often develop resistance to conventional chemotherapeutics. MicroRNAs play a crucial role in cell-cycle regulation, differentiation, apoptosis, and migration. Herein, we performed Affymetrix Gene Chip miRNA 4.0 microarray and observed differential regulation of miRNAs (75 upregulated and 199 downregulated) in metastatic MDA-MB-231 cells as compared to immortalized human non-tumorigenic breast epithelial (MCF-10A) cells. MicroRNA-941 was significantly upregulated in MDA-MB-231 cells (almost nine-fold increase) in comparison to MCF-10A cells. Transfection of MiRNA-941 inhibitor significantly decreased the proliferation and migration of MDA-MB-231 cells by altering the expressions of p21, Cyclin D1, PP2B-B1, E-cadherin and MMP-13. Interestingly, we provide first evidence that inhibiting miR-941 prevents cell proliferation and phosphorylation of histone H3 at Ser10 residue. Xenograft model of breast cancer was developed by subcutaneous injection of MDA-MB-231 cells into the mammary fat pad of female athymic nude mice (Crl:NU-Foxn1nu). The tumours were allowed to grow to around 60 mm3, thereafter which we divided the animals into seven groups (n = 5). Notably, intratumoral injection of miR-941 inhibitor significantly abolished the tumour growth in MDA-MB-231 xenograft model. 5-Fluorouracil (10 mg/kg, i.p.) was used as positive control in our study. To the best of our knowledge, we report for the first time that targeting miR-941 improves the sensitivity of MDA-MB-231 cells to 5-fluorouracil. This can be of profound clinical significance, as it provides novel therapeutic approach for treating variety of cancers (overexpressing miRNA-941) in general and breast cancers in particular.
Behaviours indicating cannibalistic necrophagy in ants are modulated by the perception of pathogen infection level
Authors: Maák István , Tóth Eszter , Lenda Magdalena , Lőrinczi Gábor , Kiss Anett , Juhász Orsolya , Czechowski Wojciech , Torma Attila 
Published: October 2020

AbstractCannibalistic necrophagy is rarely observed in social hymenopterans, although a lack of food could easily favour such behaviour. One of the main supposed reasons for the rarity of necrophagy is that eating of nestmate corpses carries the risk of rapid spread of pathogens or parasites. Here we present an experimental laboratory study on behaviour indicating consumption of nestmate corpses in the antFormica polyctena. We examined whether starvation and the fungal infection level of the corpses affects the occurrence of cannibalistic necrophagy. Our results showed that the ants distinguished between corpses of different types and with different levels of infection risk, adjusting their behaviour accordingly. The frequency of behaviours indicating cannibalistic necrophagy increased during starvation, although these behaviours seem to be fairly common inF. polyctenaeven in the presence of other food sources.The occurrence and significance of cannibalistic necrophagy deserve further research because, in addition to providing additional food, it may be part of the hygienic behaviour repertoire. The ability to detect infections and handle pathogens are important behavioural adaptations for social insects, crucial for the fitness of both individual workers and the entire colony.
The endangered California Condor (Gymnogyps californianus) population is exposed to local haemosporidian parasites
Authors: Pacheco M. Andreína , Parish Chris N. , Hauck Timothy J. , Aguilar Roberto F. , Escalante Ananias A. 
Published: October 2020

AbstractThe endangered California Condor (Gymnogyps californianus) is the largest New World Vulture in North America. Despite recovery program success in saving the species from extinction, condors remain compromised by lead poisoning and limited genetic diversity. The latter makes this species especially vulnerable to infectious diseases. Thus, taking advantage of the program of blood lead testing in Arizona, condor blood samples from 2008 to 2018 were screened for haemosporidian parasites using a nested polymerase chain reaction (PCR) protocol that targets the parasite mitochondrial cytochrome b gene. Plasmodium homopolare (Family Plasmodiidae, Order Haemosporida, Phylum Apicomplexa), was detected in condors captured in 2014 and 2017. This is the first report of a haemosporidian species infecting California Condors, and the first evidence of P. homopolare circulating in the Condor population from Arizona. Although no evidence of pathogenicity of P. homopolare in Condors was found, this study showed that the California Condors from Arizona are exposed to haemosporidian parasites that likely are spilling over from other local bird species. Thus, active surveillance should be an essential part of conservation efforts to mitigate the impact of infectious diseases, an increasingly recognized cause of global wildlife extinctions worldwide, particularly in avian populations considered vulnerable or endangered.
New 12S metabarcoding primers for enhanced Neotropical freshwater fish biodiversity assessment
Authors: Milan David T. , Mendes Izabela S. , Damasceno Júnio S. , Teixeira Daniel F. , Sales Naiara G. , Carvalho Daniel C. 
Published: October 2020

AbstractThe megadiverse Neotropical fish fauna lacks a comprehensive and reliable DNA reference database, which hampers precise species identification and DNA based biodiversity assessment in the region. Here, we developed a mitochondrial 12S ribosomal DNA reference database for 67 fish species, representing 54 genera, 25 families, and six major Neotropical orders. We aimed to develop mini-barcode markers (i.e. amplicons with less than 200 bp) suitable for DNA metabarcoding by evaluating the taxonomic resolution of full-length and mini-barcodes and to determine a threshold value for fish species delimitation using 12S. Evaluation of the target amplicons demonstrated that both full-length library (565 bp) and mini-barcodes (193 bp) contain enough taxonomic resolution to differentiate all 67 fish species. For species delimitation, interspecific genetic distance threshold values of 0.4% and 0.55% were defined using full-length and mini-barcodes, respectively. A custom reference database and specific mini-barcode markers are important assets for ecoregion scale DNA based biodiversity assessments (such as environmental DNA) that can help with the complex task of conserving the megadiverse Neotropical ichthyofauna.
Mitigation potential of selenium nanoparticles and riboflavin against arsenic and elevated temperature stress in Pangasianodon hypophthalmus
Authors: Kumar Neeraj , Gupta Sanjay Kumar , Chandan Nitish Kumar , Bhushan Shashi , Singh Dilip Kumar , Kumar Paritosh , Kumar Prem , Wakchaure Goraksha C. , Singh Narendra Pratap 
Published: October 2020

AbstractClimate change impact has disturbed the rainfall pattern worsening the problems of water availability in the aquatic ecosystem of India and other parts of the world. Arsenic pollution, mainly through excessive use of groundwater and other anthropogenic activities, is aggravating in many parts of the world, particularly in South Asia. We evaluated the efficacy of selenium nanoparticles (Se-NPs) and riboflavin (RF) to ameliorate the adverse impacts of elevated temperature and arsenic pollution on growth, anti-oxidative status and immuno-modulation in Pangasianodon hypophthalmus. Se-NPs were synthesized using fish gill employing green synthesis method. Four diets i.e., Se-NPs (0 mg kg−1) + RF (0 mg kg−1); Se-NPs (0.5 mg kg−1) + RF (5 mg kg−1); Se-NPs (0.5 mg kg−1) + RF (10 mg kg−1); and Se-NPs (0.5 mg kg−1) + RF (15 mg kg−1) were given in triplicate in a completely randomized block design. The fish were treated in arsenic (1/10th of LC50, 2.68 mg L−1) and high temperature (34 °C). Supplementation of the Se-NPs and RF in the diets significantly (p < 0.01) enhanced growth performance (weight gain, feed efficiency ratio, protein efficiency ratio, and specific growth rate), anti-oxidative status and immunity of the fish. Nitroblue tetrazolium (NBT), total immunoglobulin, myeloperoxidase and globulin enhanced (p < 0.01) with supplementation (Se-NPs + RF) whereas, albumin and albumin globulin (A:G) ratio (p < 0.01) reduced. Stress biomarkers such as lipid peroxidation in the liver, gill and kidney, blood glucose, heat shock protein 70 in gill and liver as well as serum cortisol reduced (p < 0.01) with supplementation of Se-NPs and RF, whereas, acetylcholine esterase and vitamin C level in both brain and muscle significantly enhanced (p < 0.01) in compared to control and stressors group (As + T) fed with control diet. The fish were treated with pathogenic bacteria after 90 days of experimental trial to observe cumulative mortality and relative survival for a week. The arsenic concentration in experimental water and bioaccumulation in fish tissues was also determined, which indicated that supplementation of Se-NPs and RF significantly reduced (p < 0.01) bioaccumulation. The study concluded that a combination of Se-NPs and RF has the potential to mitigate the stresses of high temperature and As pollution in P. hypophthalmus.