bluuebunny/crossref_metadata_2025_split huggingface dataset:
Interdisciplinary insights from instructor interviews reconciling “structure and function” in biology, biochemistry, and chemistry through the context of enzyme binding
Authors: Yoho Rachel , Foster Tanner , Urban-Lurain Mark , Merrill John , Haudek Kevin C. 
Published: December 2019

AbstractStructure and function is an essential crosscutting concept in undergraduate STEM education and appears in numerous disciplines and contexts from the introductory to advanced levels. This concept is exemplified by enzyme binding, a topic spanning biology, biochemistry, and chemistry. We interviewed 13 instructors with primary instructional appointments in these fields, focusing on how they think about and also teach structure and function in their courses. We focused on how they define the component terms, “structure” and “function,” their personal learning development, and how they view the interactions among these three disciplines. Overall, we found that context and terminology appear to be key factors in these conversations, as well as in the classroom. These instructors, in reflecting on their own educational development, do not consider that they developed their understanding in an undergraduate classroom. Instead, they focused on research experiences, graduate studies, postdoctoral work, or even, teaching appointments as essential points for their own knowledge. These instructors held strong opinions about interactions among the disciplines, both from the perspectives of cross-talk and what their students experience. These opinions generally center on individual instructors’ opinions of other disciplines, apparent inclination to collaborate on teaching across disciplinary lines, and general preconceptions of other fields. Overall, this work has implications on the path forward for undergraduate teaching and learning of structure and function.
Bi-caudate ratio as a MRI marker of white matter atrophy in multiple sclerosis and ischemic leukocencephalopathy
Authors: Serag Dena , Ragab Eman 
Published: December 2019

Abstract
Background
Brain atrophy measurement is now a cornerstone in basic neuro-imaging science. While assessment of white matter atrophy by visual inspection is subjective, volumetric approaches are time-consuming and not often feasible. Bi-caudate ratio represents a linear surrogate parameter of brain volume that can be derived from standard imaging sequences. This study highlights the value of the bi-caudate ratio (BCR) as a MRI marker of white matter atrophy in patients with multiple sclerosis and ischemic leukoencephalopathy and set a cut-off value to differentiate between patients with white matter atrophy and normal subjects.

Results
A total of 115 patients (54 males and 61 females) diagnosed with white matter leukoencephalopathy (MS in 51 patients and ischemic leukoencephalopathy in 64 patients) were included. Another group of 60 subjects with a normal white matter signal was recruited as a control group. BCR for the patient group ranged from 0.13 to 0.27 (mean (± SD) = 0.16 ± 0.02), while for the control group, it ranged from 0.05 mm to 0.13 (mean (± SD) = 0.09 ± 0.01). The difference between the two groups was statistically significant (P value < 0.001). A cut-off value of 0.13 was used to differentiate between the BCR in both patients and control groups with sensitivity, specificity, and accuracy of 99.2%, 100%, and 99%, respectively. The difference in BCR for patients diagnosed with MS and ischemic leukoencephalopathy was also statistically significant (P value < 0.001).

Conclusion
The bi-caudate ratio represents a linear measurement of subcortical atrophy that can be useful as a surrogate marker of global supra-tentorial white matter atrophy instead of the usually performed visual and therefore subjective assessment. It is an easily obtained measure that can be performed without complex time-consuming volumetric studies. Our findings also revealed that the BCR is higher in patients with ischemic leukoencephalopathy than in patients with MS.
Single Islet Autoantibody at Diagnosis of Clinical Type 1 Diabetes is Associated With Older Age and Insulin Resistance
Authors: Redondo Maria J , Sosenko Jay , Libman Ingrid , McVean Jennifer J F , Tosur Mustafa , Atkinson Mark A , Becker Dorothy , Geyer Susan 
Published: December 2019

Abstract

Context
Multiple islet autoantibody positivity usually precedes clinical (stage 3) type 1 diabetes (T1D).

Objective
To test the hypothesis that individuals who develop stage 3 T1D with only a single autoantibody have unique metabolic differences.

Design
Cross-sectional analysis of participants in the T1D TrialNet study.

Setting
Autoantibody-positive relatives of individuals with stage 3 T1D.

Participants
Autoantibody-positive relatives who developed stage 3 T1D (at median age 12.4 years, range = 1.4–58.6) and had autoantibody data close to clinical diagnosis (n = 786, 47.4% male, 79.9% non-Hispanic white).

Main Outcome Measures
Logistic regression modeling was used to assess relationships between autoantibody status and demographic, clinical, and metabolic characteristics, adjusting for potential confounders and correcting for multiple comparisons.

Results
At diagnosis of stage 3 T1D, single autoantibody positivity, observed in 119 (15.1%) participants (72% GAD65, 13% microinsulin antibody assay, 11% insulinoma-associated antigen 2, 1% islet cell antibody, 3% autoantibodies to zinc transporter 8 [ZnT8]), was significantly associated with older age, higher C-peptide measures (fasting, area under the curve, 2-hour, and early response in oral glucose tolerance test), higher homeostatic model assessment of insulin resistance, and lower T1D Index60 (all P &lt; 0.03). While with adjustment for age, 2-hour C-peptide remained statistically different, controlling for body mass index (BMI) attenuated the differences. Sex, race, ethnicity, human leukocyte antigen DR3-DQ2, and/or DR4-DQ8, BMI category, and glucose measures were not significantly associated with single autoantibody positivity.

Conclusions
Compared with multiple autoantibody positivity, single autoantibody at diagnosis of stage 3 T1D was associated with older age and insulin resistance possibly mediated by elevated BMI, suggesting heterogeneous disease pathogenesis. These differences are potentially relevant for T1D prevention and treatment.
Beta-1 and Not Beta-3 Adrenergic Receptors May Be the Primary Regulator of Human Brown Adipocyte Metabolism
Authors: Riis-Vestergaard Mette Ji , Richelsen Bjørn , Bruun Jens Meldgaard , Li Wei , Hansen Jacob B , Pedersen Steen Bønløkke 
Published: December 2019

Abstract

Purpose
Brown adipose tissue (BAT) activation in humans has gained interest as a potential target for treatment of obesity and insulin resistance. In rodents, BAT is primarily induced through beta-3 adrenergic receptor (ADRB3) stimulation, whereas the primary beta adrenergic receptors (ADRBs) involved in human BAT activation are debated. We evaluated the importance of different ADRB subtypes for uncoupling protein 1 (UCP1) induction in human brown adipocytes.

Methods
A human BAT cell model (TERT-hBA) was investigated for subtype-specific ADRB agonists and receptor knockdown on UCP1 mRNA levels and lipolysis (glycerol release). In addition, fresh human BAT biopsies and TERT-hBA were evaluated for expression of ADRB1, ADRB2, and ADRB3 using RT-qPCR.

Results
The predominant ADRB subtype in TERT-hBA adipocytes and BAT biopsies was ADRB1. In TERT-hBA, UCP1 mRNA expression was stimulated 11.0-fold by dibutyryl cAMP (dbcAMP), 8.0-fold to 8.4-fold by isoproterenol (ISO; a pan-ADRB agonist), and 6.1-fold to 12.7-fold by dobutamine (ADRB1 agonist), whereas neither procaterol (ADRB2 agonist), CL314.432, or Mirabegron (ADRB3 agonists) affected UCP1. Similarly, dbcAMP, ISO, and dobutamine stimulated glycerol release, whereas lipolysis was unaffected by ADRB2 and ADRB3 agonists. Selective knockdown of ADRB1 significantly attenuated ISO-induced UCP1 expression.

Conclusion
The adrenergic stimulation of UCP1 and lipolysis may mainly be mediated through ADRB1. Moreover, ADRB1 is the predominant ADRB in both TERT-hBA and human BAT biopsies. Thus, UCP1 expression in human BAT may, unlike in rodents, primarily be regulated by ADRB1. These findings may have implications for ADRB agonists as future therapeutic compounds for human BAT activation.
Low oxygen enhances trophoblast column growth by potentiating differentiation of the extravillous lineage and promoting LOX activity
Authors: Treissman Jenna , Yuan Victor , Baltayeva Jennet , Le Hoa T. , Castellana Barbara , Robinson Wendy P. , Beristain Alexander G. 
Published: December 2019

ABSTRACT
Early placental development and the establishment of the invasive trophoblast lineage take place within a low oxygen environment. However, conflicting and inconsistent findings have obscured the role of oxygen in regulating invasive trophoblast differentiation. In this study, the effect of hypoxic, normoxic and atmospheric oxygen on invasive extravillous pathway progression was examined using a human placental explant model. Here, we show that exposure to low oxygen enhances extravillous column outgrowth and promotes the expression of genes that align with extravillous trophoblast (EVT) lineage commitment. By contrast, supra-physiological atmospheric levels of oxygen promote trophoblast proliferation while simultaneously stalling EVT progression. Low oxygen-induced EVT differentiation coincided with elevated transcriptomic levels of lysyl oxidase (LOX) in trophoblast anchoring columns, in which functional experiments established a role for LOX activity in promoting EVT column outgrowth. The findings of this work support a role for low oxygen in potentiating the differentiation of trophoblasts along the extravillous pathway. In addition, these findings generate insight into new molecular processes controlled by oxygen during early placental development.
Impact of Surgical Margins in Breast Cancer After Preoperative Systemic Chemotherapy on Local Recurrence and Survival
Authors: Wimmer K. , Bolliger M. , Bago-Horvath Z. , Steger G. , Kauer-Dorner D. , Helfgott R. , Gruber C. , Moinfar F. , Mittlböck M. , Fitzal F. 
Published: December 2019

Abstract
Background
While “no tumour on ink” is an accepted margin width for R0 resection in primary surgery, it’s unclear if it’s oncologically safe after neoadjuvant chemotherapy (NAC). Only limited data demonstrate that surgery within new margins in cases of a pathological complete response (pCR) is safe. We therefore investigated the influence of different margins and pCR on local recurrence and survival rates after NAC.

Methods
We retrospectively analysed data of 406 women with invasive breast cancer, treated with NAC and breast-conserving therapy between 1994 and 2014 in two certified Austrian breast health centres. We compared R ≤ 1 mm, R > 1 mm and RX (pCR) for local recurrence-free survival (LRFS), disease-free survival (DFS) and overall survival (OS).

Results
After a median follow-up of 84.3 months, the 5-year LRFS (R ≤ 1 mm: 94.2%, R > 1 mm: 90.6%, RX: 95.0%; p = 0.940), the 5-year DFS (R ≤ 1 mm: 71.9%, R > 1 mm: 74.1%, RX: 87.2%; p = 0.245) and the 5-year OS (R ≤ 1 mm: 85.1%, R > 1 mm: 88.0%, RX: 96.4%; p = 0.236) did not differ significantly between narrow, wide, nor RX resections. Regarding DFS and OS, a negative nodal status reduced the hazard ratio significantly.

Conclusion
There is no significant difference in LRFS, DFS and OS comparing close, wide or unknown margins after pCR. We suggest that resection in new margins after NAC is safe according to “no tumour on ink”. Resection of the clipped area in cases of pCR is emphasized.
Advances in C-C Coupling Reactions Catalyzed by Homogeneous Phosphine Free Palladium Catalysts
Authors: Mannepalli Lakshmi Kantam , Gadipelly Chandrakanth , Deshmukh Gunjan , Likhar Pravin , Pottabathula Srinivas 
Published: December 2019

Abstract
Carbon-carbon coupling reactions are one of the most important systems to be studied and the design of palladium based phosphine free catalysts is crucial. In this account, we present a summary of the work carried out by our research group on the design and synthesis of efficient palladium based phosphine free catalysts for the Heck and Suzuki coupling reactions of deactivated and sterically hindered substrates.
A survey exploring biomedical editors’ perceptions of editorial interventions to improve adherence to reporting guidelines
Authors: Blanco David , Hren Darko , Kirkham Jamie J. , Cobo Erik , Schroter Sara 
Published: December 2019

Background: Improving the completeness of reporting of biomedical research is essential for improving its usability. For this reason, hundreds of reporting guidelines have been created in the last few decades but adherence to these remains suboptimal. This survey aims to inform future evaluations of interventions to improve adherence to reporting guidelines. In particular, it gathers editors’ perceptions of a range of interventions at various stages in the editorial process. Methods: We surveyed biomedical journal editors that were knowledgeable about this topic. The questionnaire included open and closed questions that explored (i) the current practice of their journals, (ii) their perceptions of the ease of implementation of different interventions and the potential effectiveness of these at improving adherence to reporting guidelines, (iii) the barriers and facilitators associated with these interventions, and (iv) suggestions for future interventions and incentives. Results: Of the 99 editors invited, 24 (24%) completed the survey. Involving trained editors or administrative staff was deemed the potentially most effective intervention but, at the same time, it was considered moderately difficult to implement due to logistic and resource issues. Participants believed that checking adherence to guidelines goes beyond the role of peer reviewers and were concerned that the quality of peer review could be compromised. Reviewers are generally not expected to focus on reporting issues but on providing an expert view on the importance, novelty, and relevance of the manuscript. Journals incentivising adherence, and publishers and medical institutions encouraging journals to take action to boost adherence were two recurrent themes. Conclusions: Biomedical journal editors generally believed that engaging trained professionals would be the most effective, yet resource intensive, editorial intervention. Also, they thought that peer reviewers should not be asked to check RGs. Future evaluations of interventions can take into account the barriers, facilitators, and incentives described in this survey.
Evaluation of cropping method for perennial ratoon rice: Adaptation of SALIBU to triple-cropping in Vietnam
Authors: Oda Masato , Nguyen Huu Chiem , Huynh Van Thao 
Published: December 2019

Background: Generally, the yield of ratoon rice is at most 50% of the main crop. However, a cropping method “SALIBU” achieved more yield than the main crop and enables the perennial cropping. Although the SALIBU method is implementing 10 additional management practices to conventional method in Indonesia, the effect of each management practice is unclear. Methodology: We evaluated the effect size using an L 16 orthogonal array design pot experiment in triple-cropping rice in Vietnam. The robustness was checked by duplicating the experiment under standard and poor conditions. Results: Positive large effects were shown in the poor conditions only. Cutting twice most affected the number of ratoon tillers. Importantly, the effect was positive under poor conditions but negative under standard conditions. Late irrigation had a robust negative effect. Discussion: No treatment is effective in the triple-cropping of standard conditions. The SALIBU includes practices with unstable, negative, or minimal effects. The unstable effects show the interaction with the condition. The practices that have negative effects should exclude. Using practice on small effect size should depend on a cost-benefit analysis. Conclusions: No additional practice is effective for changing the triple-cropping to perennial ratoon cropping except harvesting near the ground. However, further work will be conducted to clarify the interaction between cutting twice and the cultivation condition.
Perception of effective access to health services in Territorial Spaces for Training and Reintegration, one year after the peace accords in Colombia: a cross-sectional study
Authors: Fernández-Niño Julián Alfredo , Chaparro Lud Magdy , Vásquez-Rodríguez Ana Beatriz , Rojas-Botero Maylen Liseth , Hernández-Neuta Ginna Esmeralda , Peñuela-Poveda Ana Maria , Rodríguez David Alejandro 
Published: December 2019

Backgrounds: The signing of the peace accords in Colombia created challenges that are inherent to post-conflict transitions. One of those is the process of reintegrating ex-combatants into society, in which ensuring their rights to health is a particularly significant challenge in rural areas affected by armed conflict. These areas, known as Territorial Spaces for Training and Reintegration (ETCR, in Spanish), are geographically dispersed throughout 24 municipalities and 13 departments in Colombia. This study aimed to describe how ex-combatants in ETCR regions perceived access to health services one year after the signing of the peace accords. Methods: A descriptive, cross-sectional study was performed between September and October 2018. It included 591 adults and their families, from 23 ETCRs. The study was designed, culturally validated, and piloted. Interviewers were trained and a structured survey was administered containing five dimensions that characterized the perception of effective access to health services. Results: The majority of interviewees were women, heads of household, young adults, ex-combatants, and residents in an ETCR. In total of 96.4% were enrolled in Colombia’s subsidized health system, and 20.8% indicated that a member of their household required emergency health services. The regional health center provided the majority of the services. Most of those surveyed (96.0%) reported that they did not have to pay for the services, and that they received respectful (91.6%) and good quality (66.6%) care. There were few referrals to disease prevention and health promotion activities, and only 19.0% of households reported having been visited by extramural health care teams, whose activities were highly valued (80%). Lastly, there was little knowledge about community health activities. Conclusions: While residents of ETCR regions have a favorable perception of their access to health services, they need to be made aware of extramural and public health activities.
Preparation and Application of ZnFe2O4/α-Al2O3 for Photocatalytic Degradation of Methylene Blue Dye and Real Textile Effluent
Authors: Hamza Abdulhamid , Umara Alhaji Saleh Zanna , Hasan Diya'uddeen Basheer 
Published: December 2019

Present work was aimed at the development of α-Al2O3 supported ZnFe2O4 visible-light responsive photocatalysts. ZnFe2O4 and α-Al2O3 supported ZnFe2O4 were synthesized using co-precipitation method followed by calcination at 500 °C. The synthesized photocatalysts were characterized using x-ray diffraction (XRD) and scanning electron microscopy (SEM). The synthesized ZnFe2O4 has low crystallinity. The particle size of ZnFe2O4 is much smaller than that of the α-Al2O3 support, and ZnFe2O4 particles are dispersed on the surface of the crystalline α-Al2O3 support. 30 wt % ZnFe2O4/α-Al2O3 exhibited the highest photocatalytic activity for degradation of methylene blue dye than ZnFe2O4 and other α-Al2O3 supported photocatalysts containing 10 wt%, 20 wt% and 40 wt% ZnFe2O4. Kinetics of photocatalytic degradation of methylene blue dye using 30 wt% ZnFe2O4/Al2O3 obeys Langmuir–Hinshelwood kinetic model. Photocatalytic treatment of real textile wastewater resulted in more effective (when compared to photolytic treatment) in the reduction of wastewater’s chemical oxygen demand (COD), pH, conductivity and total dissolved solids (TDS). 30 wt% ZnFe2O4/Al2O3 was found to be more effective than unsupported ZnFe2O4 for the reduction of wastewater’s COD, pH, conductivity and TDS.
C-band 56  Gbit/s on/off keying system over a 100  km dispersion-uncompensated link using only receiver-side digital signal processing
Authors: Zhou Ji , Wang Haide , Liu Long , Yu Changyuan , Feng Yuanhua , Gao Shecheng , Liu Weiping , Li Zhaohui 
Published: December 2019

In this Letter, we present a record C-band 56 Gbit/s intensity-modulation/direct-detection optical on/off keying (OOK) system over a 100 km dispersion-uncompensated link using only the receiver-side digital signal processing (DSP). The proposed DSP mainly includes an adaptive moment estimation (Adam)-based polynomial nonlinear equalizer (PNLE), autoregression (AR)-based post filter, and maximum likelihood sequence estimation (MLSE). Due to square-law detection, chromatic dispersion induces 11 nulls on the 28 GHz spectrum of the 56 Gbit/s OOK signal after the 100 km standard-single-mode-fiber transmission. Adam-based PNLE eliminates major linear and nonlinear distortions, but it cannot compensate the nulls. After the Adam-based PNLE, the AR-based post filter and MLSE further deal with the inter-symbol interference caused by the nulls to improve the system performance. The proposed C-band 56 Gbit/s OOK system shows great potential for future metro networks and data center networks.
Leakage Investigation on a Fired Heater Tube of a Petroleum Refinery due to Carburization
Authors: Adnyana D.N. 
Published: December 2019

The fired heater of a petroleum processing refinery leaks in one of the convection tubes. The tube is made of ASTM A-106 Gr.B. Process fluid in the tube is xylene with a design pressure of 15.8 kg/cm²g and design temperature of 299 °C (at the inlet) and 405 °C (at the outlet). This study aims to determine the type and causes and the mechanism of leakage in the tube. A number of tests have been carried out including visual inspection and macroscopic analysis, chemical analysis, metallographic and hardness testing, and SEM (scanning electron microscopy) analysis which is equipped with EDS (energy dispersive spectroscopy). The results obtained showed that the leak that occurred in the convection tube was caused by carburization and metal dusting. Carburization occurs in the inner walls of the tube that experience some localized overheating due to the formation of coke deposits. AbstrakDapur pemanas pada sebuah kilang pengolahan minyak bumi mengalami kebocoran pada salah satu pipa konveksi. Pipa tersebut terbuat dari baja karbon rendah jenis ASTM A-106 Gr.B. Cairan proses di dalam pipa adalah xylene dengan tekanan desain 15,8 kg/cm²g dan suhu desain yaitu 299 °C (pada saluran masuk) dan 405 °C (pada saluran keluar). Penelitian ini bertujuan untuk menentukan jenis dan faktor penyebab serta mekanisme terjadi kebocoran pada pipa tersebut. Sejumlah pengujian telah dilakukan meliputi pemeriksaan visual dan makroskopik, analisa kimia, pengujian metalografi dan kekerasan, serta analisa SEM (scanning electron microscopy) yang dilengkapi dengan EDS (energy dispersive spectroscopy). Hasil penelitian yang diperoleh menunjukkan bahwa kebocoran yang terjadi pada pipa konveksi disebabkan oleh karburisasi dan pembentukan debu/serbuk logam. Karburisasi terjadi pada dinding bagian dalam pipa yang mengalami panas berlebih secara lokal akibat terbentuknya endapan kokas.
Technical Aspects and Applications of the Low-Bar Back Squat
Authors: Pham Richard D. , Machek Steven B. , Lorenz Kent A. 
Published: December 2019

ABSTRACT
The low-bar back squat (LBBS) is a barbell squat variation that emphasizes hip musculature through use of forward lean. This characteristic, among others, allows greater loads to be lifted and can facilitate rehabilitation in a compromised knee joint. Correct technique should be instructed to promote proper execution. This article aims to discuss the anatomical and technical differences between the high-bar back squat and LBBS, define LBBS-specific technique, and provide practitioners strategies to select the best version for their lifters.