bluuebunny/crossref_metadata_2025_split huggingface dataset:
Dietary diversity and evolution of the earliest flying vertebrates revealed by dental microwear texture analysis
Authors: Bestwick Jordan , Unwin David M. , Butler Richard J. , Purnell Mark A. 
Published: October 2020

AbstractPterosaurs, the first vertebrates to evolve active flight, lived between 210 and 66 million years ago. They were important components of Mesozoic ecosystems, and reconstructing pterosaur diets is vital for understanding their origins, their roles within Mesozoic food webs and the impact of other flying vertebrates (i.e. birds) on their evolution. However, pterosaur dietary hypotheses are poorly constrained as most rely on morphological-functional analogies. Here we constrain the diets of 17 pterosaur genera by applying dental microwear texture analysis to the three-dimensional sub-micrometre scale tooth textures that formed during food consumption. We reveal broad patterns of dietary diversity (e.g.Dimorphodonas a vertebrate consumer;Austriadactylusas a consumer of ‘hard’ invertebrates) and direct evidence of sympatric niche partitioning (Rhamphorhynchusas a piscivore;Pterodactylusas a generalist invertebrate consumer). We propose that the ancestral pterosaur diet was dominated by invertebrates and later pterosaurs evolved into piscivores and carnivores, shifts that might reflect ecological displacements due to pterosaur-bird competition.
Genotype by environment interaction for gene expression in Drosophila melanogaster
Authors: Huang Wen , Carbone Mary Anna , Lyman Richard F. , Anholt Robert R. H. , Mackay Trudy F. C. 
Published: October 2020

AbstractThe genetics of phenotypic responses to changing environments remains elusive. Using whole-genome quantitative gene expression as a model, here we study how the genetic architecture of regulatory variation in gene expression changed in a population of fully sequenced inbred Drosophila melanogaster strains when flies developed in different environments (25 °C and 18 °C). We find a substantial fraction of the transcriptome exhibited genotype by environment interaction, implicating environmentally plastic genetic architecture of gene expression. Genetic variance in expression increases at 18 °C relative to 25 °C for most genes that have a change in genetic variance. Although the majority of expression quantitative trait loci (eQTLs) for the gene expression traits in the two environments are shared and have similar effects, analysis of the environment-specific eQTLs reveals enrichment of binding sites for two transcription factors. Finally, although genotype by environment interaction in gene expression could potentially disrupt genetic networks, the co-expression networks are highly conserved across environments. Genes with higher network connectivity are under stronger stabilizing selection, suggesting that stabilizing selection on expression plays an important role in promoting network robustness.
Fast site-to-site electron transfer of high-entropy alloy nanocatalyst driving redox electrocatalysis
Authors: Li Hongdong , Han Yi , Zhao Huan , Qi Wenjing , Zhang Dan , Yu Yaodong , Cai Wenwen , Li Shaoxiang , Lai Jianping , Huang Bolong , Wang Lei 
Published: October 2020

AbstractDesigning electrocatalysts with high-performance for both reduction and oxidation reactions faces severe challenges. Here, the uniform and ultrasmall (~3.4 nm) high-entropy alloys (HEAs) Pt18Ni26Fe15Co14Cu27 nanoparticles are synthesized by a simple low-temperature oil phase strategy at atmospheric pressure. The Pt18Ni26Fe15Co14Cu27/C catalyst exhibits excellent electrocatalytic performance for hydrogen evolution reaction (HER) and methanol oxidation reaction (MOR). The catalyst shows ultrasmall overpotential of 11 mV at the current density of 10 mA cm−2, excellent activity (10.96 A mg−1Pt at −0.07 V vs. reversible hydrogen electrode) and stability in the alkaline medium. Furthermore, it is also the efficient catalyst (15.04 A mg−1Pt) ever reported for MOR in alkaline solution. Periodic DFT calculations confirm the multi-active sites for both HER and MOR on the HEA surface as the key factor for both proton and intermediate transformation. Meanwhile, the construction of HEA surfaces supplies the fast site-to-site electron transfer for both reduction and oxidation processes.
Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli
Authors: Yashiro Yuka , Sakaguchi Yuriko , Suzuki Tsutomu , Tomita Kozo 
Published: October 2020

AbstractToxin-antitoxin systems in bacteria contribute to stress adaptation, dormancy, and persistence. AtaT, a type-II toxin in enterohemorrhagic E. coli, reportedly acetylates the α-amino group of the aminoacyl-moiety of initiator Met-tRNAfMet, thus inhibiting translation initiation. Here, we show that AtaT has a broader specificity for aminoacyl-tRNAs than initially claimed. AtaT efficiently acetylates Gly-tRNAGly, Trp-tRNATrp, Tyr-tRNATyr and Phe-tRNAPhe isoacceptors, in addition to Met-tRNAfMet, and inhibits global translation. AtaT interacts with the acceptor stem of tRNAfMet, and the consecutive G-C pairs in the bottom-half of the acceptor stem are required for acetylation. Consistently, tRNAGly, tRNATrp, tRNATyr and tRNAPhe also possess consecutive G-C base-pairs in the bottom halves of their acceptor stems. Furthermore, misaminoacylated valyl-tRNAfMet and isoleucyl-tRNAfMet are not acetylated by AtaT. Therefore, the substrate selection by AtaT is governed by the specific acceptor stem sequence and the properties of the aminoacyl-moiety of aminoacyl-tRNAs.
Functional characterization of Schistosoma mansoni fucosyltransferases in Nicotiana benthamiana plants
Authors: van Noort Kim , Nguyen Dieu-Linh , Kriechbaumer Verena , Hawes Chris , Hokke Cornelis H. , Schots Arjen , Wilbers Ruud H. P. 
Published: October 2020

AbstractHelminth parasites secrete a wide variety of immunomodulatory proteins and lipids to dampen host immune responses. Many of these immunomodulatory compounds are modified with complex sugar structures (or glycans), which play an important role at the host–parasite interface. As an example, the human blood fluke Schistosoma mansoni produces highly fucosylated glycan structures on glycoproteins and glycolipids. Up to 20 different S. mansoni fucosyltransferase (SmFucT) genes can be found in genome databases, but thus far only one enzyme has been functionally characterized. To unravel the synthesis of highly fucosylated N-glycans by S. mansoni, we examined the ability of ten selected SmFucTs to modify N-glycans upon transient expression in Nicotiana benthamiana plants. All enzymes were localized in the plant Golgi apparatus, which allowed us to identify the SmFucTs involved in core fucosylation and the synthesis of complex antennary glycan motifs. This knowledge provides a starting point for investigations into the role of specific fucosylated glycan motifs of schistosomes in parasite-host interactions. The functionally characterized SmFucTs can also be applied to synthesize complex N-glycan structures on recombinant proteins to study their contribution to immunomodulation. Furthermore, this plant expression system will fuel the development of helminth glycoproteins for pharmaceutical applications or novel anti-helminth vaccines.
Improvement of Certolizumab Fab′ properties by PASylation technology
Authors: Mazaheri Somayeh , Talebkhan Yeganeh , Mahboudi Fereidoun , Nematollahi Leila , Cohan Reza Ahangari , Mirabzadeh Ardakani Esmat , Bayat Elham , Sabzalinejad Masoumeh , Sardari Soroush , Torkashvand Fatemeh 
Published: October 2020

AbstractCertolizumab pegol is a Fab′ antibody fragment for treatment of rheumatoid arthritis and Crohn’s disease which is conjugated to a 40 kDa PEG molecule in order to increase the protein half-life. PEGylation may have disadvantages including immunogenicity, hypersensitivity, vacuolation, decreased binding affinity and biological activity of the protein. To overcome these problems, PASylation has been developed as a new approach. The nucleotide sequence encoding 400 amino acid PAS residues was genetically fused to the corresponding nucleotide sequences of both chains of certolizumab. Then, the bioactivity as well as physicochemical and pharmacokinetic properties of the recombinant PASylated expressed protein was assayed. Circular dichroism spectroscopy demonstrated that the random coil structure of PAS sequences did not change the secondary structure of the PASylated Fab′ molecule. It was observed that PASylation influenced the properties of the Fab′ molecule by which the hydrodynamic radius and neutralization activity were increased. Also, the antigen binding and binding kinetic parameters improved in comparison to the PEGylated Fab′ antibody. Pharmacokinetic studies also showed prolonged terminal half-life and improved pharmacokinetic parameters in PASylated recombinant protein in comparison to the PEGylated and Fab′ control molecules. The results reconfirmed the efficiency of PASylation approach as a potential alternative method in increasing the half-life of pharmaceutical proteins.
3D echocardiography, arterial stiffness, and biomarkers in early diagnosis and prediction of CHOP-induced cardiotoxicity in non-Hodgkin’s lymphoma
Authors: Mihalcea Diana , Florescu Maria , Bruja Ramona , Patrascu Natalia , Vladareanu Ana-Maria , Vinereanu Dragos 
Published: October 2020

AbstractCHOP (cyclophosphamide, doxorubicin, vincristine, prednisone) represents standard chemotherapy in non-Hodgkin's lymphoma (NHL) with risk of cardiotoxicity. To define new parameters, such as 3D myocardial deformation, arterial stiffness, and biomarkers for early diagnosis and prediction of cardiotoxicity. 110 NHL patients with LVEF > 50%, scheduled for CHOP, were evaluated at baseline, after third cycle and chemotherapy completion. 3DE assessed LVEF and myocardial deformation: longitudinal (LS), radial, circumferential, area strain. Echo-tracking analysed arterial stiffness: PWV, β index, wave intensity. Troponin I and NT-pro-BNP were measured. After chemotherapy completion, 18 patients (16%) (group I) developed cardiotoxicity (LVEF decrease < 50%, with > 10% from baseline); 92 patients (group II) did not. Significant reduction of 3D LV deformation and increase of arterial stiffness developed starting with third cycle, with greater changes in group I. LS reduction and PWV increase after third cycle were the best independent predictors for LVEF decrease; the association of LS decrease by > 19% and PWV increase by > 27% after third cycle predicted cardiotoxicity after chemotherapy completion (90% sensitivity and 81% specificity). 3D LS and PWV can detect early chemotherapy-induced cardiotoxicity and predict LVEF decline. These parameters should be incorporated in clinical protocols to monitor cardiovascular function during chemotherapy and early intervention.
Male Antarctic fur seals: neglected food competitors of bioindicator species in the context of an increasing Antarctic krill fishery
Authors: Lowther A. D. , Staniland I. , Lydersen C. , Kovacs K. M. 
Published: October 2020

AbstractThe fishery for Antarctic krill is currently managed using a precautionary, ecosystem-based approach to limiting catch, with performance indices from a long-term monitoring program focused on several krill-dependent predators that are used to track ecosystem health. Concerns over increased fishing in concentrated areas and ongoing efforts to establish a Marine Protected Area along the Peninsula, a key fishing region, is driving the development of an adaptive management system for the fishery. The cumulative effects of fishing effort and interactions among krill-dependent predators and their performance is at present neglected in the CCAMLR Ecosystem Monitoring Program. However, we show considerable overlap between male Antarctic fur seals and the krill fishery in a complex mosaic, suggesting potential for cumulative impacts on other krill dependent predators. A holistic view is required as part of future efforts to manage the krill fishery that incorporates various sources of potential impacts on the performance of bioindicator species, including the fishery and its interactions with various krill dependent predators.
Non-contact vital-sign monitoring of patients undergoing haemodialysis treatment
Authors: Villarroel Mauricio , Jorge João , Meredith David , Sutherland Sheera , Pugh Chris , Tarassenko Lionel 
Published: October 2020

AbstractA clinical study was designed to record a wide range of physiological values from patients undergoing haemodialysis treatment in the Renal Unit of the Churchill Hospital in Oxford. Video was recorded for a total of 84 dialysis sessions from 40 patients during the course of 1 year, comprising an overall video recording time of approximately 304.1 h. Reference values were provided by two devices in regular clinical use. The mean absolute error between the heart rate estimates from the camera and the average from two reference pulse oximeters (positioned at the finger and earlobe) was 2.8 beats/min for over 65% of the time the patient was stable. The mean absolute error between the respiratory rate estimates from the camera and the reference values (computed from the Electrocardiogram and a thoracic expansion sensor—chest belt) was 2.1 breaths/min for over 69% of the time for which the reference signals were valid. To increase the robustness of the algorithms, novel methods were devised for cancelling out aliased frequency components caused by the artificial light sources in the hospital, using auto-regressive modelling and pole cancellation. Maps of the spatial distribution of heart rate and respiratory rate information were developed from the coefficients of the auto-regressive models. Most of the periods for which the camera could not produce a reliable heart rate estimate lasted under 3 min, thus opening the possibility to monitor heart rate continuously in a clinical environment.
Post-seismic deformation mechanism of the July 2015 MW 6.5 Pishan earthquake revealed by Sentinel-1A InSAR observation
Authors: Wang Sijia , Zhang Yongzhi , Wang Yipeng , Jiao Jiashuang , Ji Zongtong , Han Ming 
Published: October 2020

AbstractOn 3 July 2015, the Mw 6.5 Pishan earthquake occurred at the junction of the southwestern margin of the Tarim Basin and the northwestern margin of the Tibetan Plateau. To understand the seismogenic mechanism and the post-seismic deformation behavior, we investigated the characteristics of the post-seismic deformation fields in the seismic area, using 9 Sentinel-1A TOPS synthetic aperture radar (SAR) images acquired from 18 July 2015 to 22 September 2016 with the Small Baseline Subset Interferometric SAR (SBAS-InSAR) technique. Postseismic LOS deformation displayed logarithmic behavior, and the temporal evolution of the post-seismic deformation is consistent with the aftershock sequence. The main driving mechanism of near-field post-seismic displacement was most likely to be afterslip on the fault and the entire creep process consists of three creeping stages. Afterward, we used the steepest descent method to invert the afterslip evolution process and analyzed the relationship between post-seismic afterslip and co-seismic slip. The results witness that 447 days after the mainshock (22 September 2016), the afterslip was concentrated within one principal slip center. It was located 5–25 km along the fault strike, 0–10 km along with the fault dip, with a cumulative peak slip of 0.18 m. The 447 days afterslip seismic moment was approximately 2.65 × 1017 N m, accounting for approximately 4.1% of the co-seismic geodetic moment. The deep afterslip revealed that a creeping process from steady-state “secondary” creeping to accelerating “tertiary” creep in the deep of fault. The future seismic hazard deserves further attention and research.
Validation of the Third Molar Maturation Index (I3M) to assess the legal adult age in the Portuguese population
Authors: Albernaz Neves João , Antunes-Ferreira Nathalie , Machado Vanessa , Botelho João , Proença Luís , Quintas Alexandre , Delgado Ana Sintra , Mendes José João , Cameriere Roberto 
Published: October 2020

AbstractAge estimation is a major step in forensic and legal procedures. Its relevance has been increasing due to growing society issues, such as identification of missing people, crimes against minors or lack of valid identification papers from locals or foreigners. Evaluation of the cut-off value of the Third Molar Maturation Index (I3M) = 0.08 for discriminating minors from adults in the Portuguese population. The left lower third molars were analysed by applying a specific cut-off value of 0.08 determined by Cameriere et al. in 2008. A sample of 778 digital panoramic radiographs of a representative Portuguese sample (442 females and 336 males), in the age range of 12–24 years (mean age 17.7 ± 2.98 years in females and 18.1 ± 3.0 years in males), was retrospectively evaluated. I3M decreased as the real age gradually increased in both sexes. The 0.08 cut-off score was valuable in discriminating adults from minors. According to the pooled results, the accuracy, by means of area under the curve, was 92.8% (95% confidence interval (CI) 91.0–94.6%). The proportion of correctly classified subjects (sensitivity) was 90.7% (95% CI 88.7–92.8%) and the specificity was 94.9% (95% CI 93.3–96.4%). The results show that I3M is a valuable method to differentiate minors from adults in the Portuguese population.
Piglets vocally express the anticipation of pseudo-social contexts in their grunts
Authors: Villain A. S. , Hazard A. , Danglot M. , Guérin C. , Boissy A. , Tallet C. 
Published: October 2020

AbstractEmotions not only arise in reaction to an event but also while anticipating it, making this context a means of accessing the emotional value of events. Before now, anticipatory studies have rarely considered whether vocalisations carry information about emotional states. We studied both the grunts of piglets and their spatial behaviour as they anticipated two (pseudo)social events known to elicit positive emotions of different intensity: arrival of familiar conspecifics and arrival of a familiar human. Piglets spatially anticipated both pseudo-social contexts, and the spectro temporal features of grunts differed according to the emotional context. Piglets produced low-frequency grunts at a higher rate when anticipating conspecifics compared to anticipating a human. Spectral noise increased when piglets expected conspecifics, whereas the duration and frequency range increased when expecting a human. When the arrival of conspecifics was delayed, the grunt duration increased, whereas when the arrival of the human was delayed, the spectral parameters were comparable to those during isolation. This shows that vocal expressions in piglets during anticipation are specific to the expected reward. Vocal expressions—both their temporal and spectral features- are thus a good way to explore the emotional state of piglets during the anticipation of challenging events.
Predicting stroke severity with a 3-min recording from the Muse portable EEG system for rapid diagnosis of stroke
Authors: Wilkinson Cassandra M. , Burrell Jennifer I. , Kuziek Jonathan W. P. , Thirunavukkarasu Sibi , Buck Brian H. , Mathewson Kyle E. 
Published: October 2020

AbstractIn this study, we demonstrated the use of low-cost portable electroencephalography (EEG) as a method for prehospital stroke diagnosis. We used a portable EEG system to record data from 25 participants, 16 had acute ischemic stroke events, and compared the results to age-matched controls that included stroke mimics. Delta/alpha ratio (DAR), (delta + theta)/(alpha + beta) ratio (DBATR) and pairwise-derived Brain Symmetry Index (pdBSI) were investigated, as well as head movement using the on-board accelerometer and gyroscope. We then used machine learning to distinguish between different subgroups. DAR and DBATR increased in ischemic stroke patients with increasing stroke severity (p = 0.0021, partial η2 = 0.293; p = 0.01, partial η2 = 0.234). Also, pdBSI decreased in low frequencies and increased in high frequencies in patients who had a stroke (p = 0.036, partial η2 = 0.177). Using classification trees, we were able to distinguish moderate to severe stroke patients and from minor stroke and controls, with a 63% sensitivity, 86% specificity and accuracy of 76%. There are significant differences in DAR, DBATR, and pdBSI between patients with ischemic stroke when compared to controls, and these effects scale with severity. We have shown the utility of a low-cost portable EEG system to aid in patient triage and diagnosis as an early detection tool.
Balloon-assisted sacroplasty as a successful procedure for osteoporotic sacral insufficiency fractures after failure of the conservative treatment
Authors: Schwetje D. , Wahd Y. El Sayed Hassan , Bornemann R. , Jansen T. R. , Pflugmacher R. , Kasapovic A. 
Published: October 2020

AbstractOsteoporotic vertebral fractures without prior adequate traumatization are frequent diagnosed in orthopedics because of the increasing life expectancy and incidence of osteoporosis. The associated high mortality is caused by reduced mobilization which leads to a higher risk of infection and a bedridden state. On the other hand the diagnosis of sacral insufficiency fractures is often prolonged because of unspecific symptoms while being associated with similar risks. This article presents an overview of the present scientific literature and a retrospective analysis of patients treated via balloon-assisted sacroplasty. In 8 years, ten patients (three men and seven women) were treated. The average age was 78.4 years and the average time until the diagnosis 4.6 weeks. In most patients a significant pain reduction after the failure of conservative treatment thanks to operative treatment as well as increased mobility was observed. Only one experienced a minor surgical complication being cement leakage with nerval impaction which did not compromise her clinical outcome or satisfaction with the procedure. Balloon-assisted sacroplasty can possibly be seen as an effective symptomatic therapy in osteoporotic insufficiency fractures.
Modulation of solute diffusivity in brain tissue as a novel mechanism of transcranial direct current stimulation (tDCS)
Authors: Xia Yifan , Khalid Wasem , Yin Zhaokai , Huang Guangyao , Bikson Marom , Fu Bingmei M. 
Published: October 2020

AbstractThe breadth of brain disorders and functions reported responsive to transcranial direct current stimulation (tDCS) suggests a generalizable mechanism of action. Prior efforts characterized its cellular targets including neuron, glia and endothelial cells. We propose tDCS also modulates the substance transport in brain tissue. High resolution multiphoton microscopy imaged the spread across rat brain tissue of fluorescently-labeled solutes injected through the carotid artery after tDCS. The effective solute diffusion coefficient of brain tissue (Deff) was determined from the spatio-temporal solute concentration profiles using an unsteady diffusion transport model. 5–10 min post 20 min–1 mA tDCS, Deff increased by ~ 10% for a small solute, sodium fluorescein, and ~ 120% for larger solutes, BSA and Dex-70k. All increases in Deff returned to the control level 25–30 min post tDCS. A mathematical model for Deff in the extracelluar space (ECS) further predicts that this dose of tDCS increases Deff by transiently enhancing the brain ECS gap spacing by ~ 1.5-fold and accordingly reducing the extracellular matrix density. The cascades leading ECS modulation and its impact on excitability, synaptic function, plasticity, and brain clearance require further study. Modulation of solute diffusivity and ECS could explain diverse outcomes of tDCS and suggest novel therapeutic strategies.