bluuebunny/crossref_metadata_2025_split huggingface dataset:
Temporal dynamics of muscle, spinal and cortical excitability and their association with kinematics during three minutes of maximal-rate finger tapping
Authors: Madinabeitia-Mancebo Elena , Madrid Antonio , Jácome Amalia , Cudeiro Javier , Arias Pablo 
Published: February 2020

AbstractWe tested peripheral, spinal and cortical excitability during 3 minutes of unresisted finger tapping at the maximal possible rate, which induced fatigue. Subsequently, we studied the temporal dynamics of muscle fatigue, expressed in the tapping movement profile, and its relationship to neural systems using mixed model analyses. The tapping rate decreased by 40% over the duration of the task. The change in the amplitude of the range of motion was not significant. The excitability of the flexor and extensor muscles of the index finger was tested via evoked potentials obtained with various types of stimulation at various levels of the motor system. The change in spinal excitability with time was evaluated considering the simultaneous changes in muscle excitability; we also considered how spinal excitability changed over time to evaluate cortical excitability. Excitability in the flexor and extensor muscles at the different levels tested changed significantly, but similar excitability levels were observed at notably different tapping rates. Our results showed that only 33% of the decrease in the tapping rate was explained by changes in the excitability of the structures tested in the present work.
Speech Intonation Induces Enhanced Face Perception in Infants
Authors: Sirri Louah , Linnert Szilvia , Reid Vincent , Parise Eugenio 
Published: February 2020

AbstractInfants’ preference for faces with direct compared to averted eye gaze, and for infant-directed over adult-directed speech, reflects early sensitivity to social communication. Here, we studied whether infant-directed speech (IDS), could affect the processing of a face with direct gaze in 4-month-olds. In a new ERP paradigm, the word ‘hello’ was uttered either in IDS or adult-direct speech (ADS) followed by an upright or inverted face. We show that the face-specific N290 ERP component was larger when faces were preceded by IDS relative to ADS. Crucially, this effect is specific to upright faces, whereas inverted faces preceded by IDS elicited larger attention-related P1 and Nc. These results suggest that IDS generates communicative expectations in infants. When such expectations are met by a following social stimulus – an upright face – infants are already prepared to process it. When the stimulus is a non-social one –inverted face – IDS merely increases general attention.
Low doses of ionizing radiation enhance angiogenesis and consequently accelerate post-embryonic development but not regeneration in zebrafish
Authors: Marques Filipa G. , Carvalho Lara , Sousa Joana S. , Rino José , Diegues Isabel , Poli Esmeralda , Pina Filomena , Saúde Leonor , Constantino Rosa Santos Susana 
Published: February 2020

AbstractLow doses of ionizing radiation (LDIR) activate endothelial cells inducing angiogenesis. In zebrafish, LDIR induce vessel formation in the sub-intestinal vessels during post-embryonic development and enhance the inter-ray vessel density in adult fin regeneration. Since angiogenesis is a crucial process involved in both post-embryonic development and regeneration, herein we aimed to understand whether LDIR accelerate these physiological conditions. Our data show that LDIR upregulate the gene expression of several pro-angiogenic molecules, such as flt1, kdr, angpt2a, tgfb2, fgf2 and cyr61in sorted endothelial cells from zebrafish larvae and this effect was abrogated by using a vascular endothelial growth factor receptor (VEGFR)-2 tyrosine kinase inhibitor. Irradiated zebrafish present normal indicators of developmental progress but, importantly LDIR accelerate post-embryonic development in a VEGFR-2 dependent signaling. Furthermore, our data show that LDIR do not accelerate regeneration after caudal fin amputation and the gene expression of the early stages markers of regeneration are not modulated by LDIR. Even though regeneration is considered as a recapitulation of embryonic development and LDIR induce angiogenesis in both conditions, our findings show that LDIR accelerate post-embryonic development but not regeneration. This highlights the importance of the physiological context for a specific phenotype promoted by LDIR.
miRNA Expression Profiles and Potential as Biomarkers in Nontuberculous Mycobacterial Pulmonary Disease
Authors: Han Sun Ae , Jhun Byung Woo , Kim Su-Young , Moon Seong Mi , Yang Bumhee , Kwon O. Jung , Daley Charles L. , Shin Sung Jae , Koh Won-Jung 
Published: February 2020

AbstractPulmonary disease (PD) due to nontuberculous mycobacteria (NTM) is increasing globally, but specific biomarkers for NTM-PD have not been established. As circulating miRNAs are promising biomarkers for various diseases, we investigated whether miRNAs have potential as NTM-PD biomarkers. Sera from 12 NTM-PD patients due toMycobacterium avium,M. intracellulare,M. abscessus, orM. massilienseand three healthy controls were initially evaluated via small RNA sequencing. Multiple miRNAs showed significant differences in expression in patients compared to in healthy controls, with some expression differences unique to PD caused by a specific mycobacterial species. Notably, 14 miRNAs exhibited significant expression differences in PD associated with all four mycobacteria. Validation by quantitative reverse-transcription-PCR in an additional 40 patients with NTM-PD and 40 healthy controls confirmed that four differentially expressed miRNAs (hsa-miR-484, hsa-miR-584-5p, hsa-miR-625-3p, and hsa-miR-4732-5p) showed significantly higher serum expressions in NTM-PD patients than in controls. Receiver operating characteristic curve analysis of these four miRNAs supported the discriminative potential for NTM-PD and their combination provided an improved diagnostic value for NTM-PD. Furthermore, bioinformatics analysis revealed their 125 target genes, which were mostly associated with immune responses. Collectively, this study identified four miRNAs as potential biomarkers for NTM-PD and provided insight into NTM-PD pathophysiology.
Kynurenine Pathway as a New Target of Cognitive Impairment Induced by Lead Toxicity During the Lactation
Authors: Ramirez Ortega Daniela , Ovalle Rodríguez Paulina , Pineda Benjamín , González Esquivel Dinora F. , Ramos Chávez Lucio Antonio , Vázquez Cervantes Gustavo I. , Roldán Roldán Gabriel , Pérez de la Cruz Gonzalo , Díaz Ruiz Araceli , Méndez Armenta Marisela , Marcial Quino Jaime , Gómez Manzo Saul , Ríos Camilo , Pérez de la Cruz Verónica 
Published: February 2020

AbstractThe immature brain is especially vulnerable to lead (Pb2+) toxicity, which is considered an environmental neurotoxin. Pb2+ exposure during development compromises the cognitive and behavioral attributes which persist even later in adulthood, but the mechanisms involved in this effect are still unknown. On the other hand, the kynurenine pathway metabolites are modulators of different receptors and neurotransmitters related to cognition; specifically, high kynurenic acid levels has been involved with cognitive impairment, including deficits in spatial working memory and attention process. The aim of this study was to evaluate the relationship between the neurocognitive impairment induced by Pb2+ toxicity and the kynurenine pathway. The dams were divided in control group and Pb2+ group, which were given tap water or 500 ppm of lead acetate in drinking water ad libitum, respectively, from 0 to 23 postnatal day (PND). The poison was withdrawn, and tap water was given until 60 PND of the progeny. The locomotor activity in open field, redox environment, cellular function, kynurenic acid (KYNA) and 3-hydroxykynurenine (3-HK) levels as well as kynurenine aminotransferase (KAT) and kynurenine monooxygenase (KMO) activities were evaluated at both 23 and 60 PND. Additionally, learning and memory through buried food location test and expression of KAT and KMO, and cellular damage were evaluated at 60 PND. Pb2+ group showed redox environment alterations, cellular dysfunction and KYNA and 3-HK levels increased. No changes were observed in KAT activity. KMO activity increased at 23 PND and decreased at 60 PND. No changes in KAT and KMO expression in control and Pb2+ group were observed, however the number of positive cells expressing KMO and KAT increased in relation to control, which correlated with the loss of neuronal population. Cognitive impairment was observed in Pb2+ group which was correlated with KYNA levels. These results suggest that the increase in KYNA levels could be a mechanism by which Pb2+ induces cognitive impairment in adult mice, hence the modulation of kynurenine pathway represents a potential target to improve behavioural alterations produced by this environmental toxin.
Association of a new 99-bp indel of the CEL gene promoter region with phenotypic traits in chickens
Authors: Wang Xiangnan , Wang Xinlei , Chen Bingjie , Guo Yaping , Tang Hehe , Li Donghua , Liu Danli , Wang Yanbin , Li Guoxi , Kang Xiangtao , Li Zhuanjian , Han Ruili 
Published: February 2020

AbstractCarboxyl ester lipase (CEL) encodes a cholesterol ester hydrolase that is secreted into the duodenum as a component of pancreatic juice. The objective of this study was to characterize the CEL gene, investigate the association between the CEL promoter variants and chicken phenotypic traits, and explore the CEL gene regulatory mechanism. An insertion/deletion (indel) caused by a 99-bp insertion fragment was shown for the first time in the chicken CEL promoter, and large differences in allelic frequency were found among commercial breeds, indigenous and feral birds. Association analysis demonstrated that this indel site had significant effects on shank length, shank girth, chest breadth at 8 weeks (p < 0.01), evisceration weight, sebum weight, breast muscle weight, and leg weight (p < 0.05). Tissue expression profiles showed extremely high levels of the CEL gene in pancreatic tissue. Moreover, the expression levels of the genes APOB, MTTP, APOV1 and SREBF1, which are involved in lipid transport, were significantly reduced by adding a 4% oxidized soybean oil diet treatment at the individual level and transfecting the embryonic primary hepatocytes with a CEL-overexpression vector. Interestingly, the results showed that the expression level of the II homozygous genotype was significantly higher than that of the ID and DD genotypes, while individuals with DD genotypes had higher phenotypic values. Therefore, these data suggested that the CEL gene might affect body growth by participating in hepatic lipoprotein metabolism and that the 99-bp indel polymorphism could be a potentially useful genetic marker for improving the economically important traits of chickens.
Assessing and mapping multi-hazard risk susceptibility using a machine learning technique
Authors: Pourghasemi Hamid Reza , Kariminejad Narges , Amiri Mahdis , Edalat Mohsen , Zarafshar Mehrdad , Blaschke Thomas , Cerda Artemio 
Published: February 2020

AbstractThe aim of the current study was to suggest a multi-hazard probability assessment in Fars Province, Shiraz City, and its four strategic watersheds. At first, we construct maps depicting the most effective factors on floods (12 factors), forest fires (10 factors), and landslides (10 factors), and used the Boruta algorithm to prioritize the impact of each respective factor on the occurrence of each hazard. Subsequently, flood, landslides, and forest fire susceptibility maps prepared using a Random Forest (RF) model in the R statistical software. Results indicate that 42.83% of the study area are not susceptible to any hazards, while 2.67% of the area is at risk of all three hazards. The results of the multi-hazard map in Shiraz City indicate that 25% of Shiraz city is very susceptible to flooding, while 16% is very susceptible to landslide occurrences. For four strategic watersheds, it is notable that in the Dorodzan Watershed, landslides and floods are the most important hazards; whereas, flood occurrences cover the largest area of the Maharlou Watershed. In contrast, the Tashk-Bakhtegan Watershed is so sensible to floods and landslides, respectively. Finally, in the Ghareaghaj Watershed, forest fire ranks as the strongest hazard, followed by floods. The validation results indicate an AUC of 0.834, 0.939, and 0.943 for the flood, landslide, and forest fire susceptibility maps, respectively. Also, other accuracy measures including, specificity, sensitivity, TSS, CCI, and Gini coefficient confirmed results of the AUC values. These results allow us to forecast the spatial behavior of such multi-hazard events, and researchers and stakeholders alike can apply them to evaluate hazards under various mitigation scenarios.
Freezing water at constant volume and under confinement
Authors: Powell-Palm Matthew J. , Rubinsky Boris , Sun Wenhao 
Published: February 2020

AbstractWater expands upon freezing. What happens when water is cooled below 0 °C in an undeformable, constant-volume container? This is a fundamental question in materials thermodynamics, and is also relevant in biological, geological, and technological applications in which ice forms under nano-, meso-, or macroscale confinement. Here, we analyze the phase-equilibria and kinetic behaviors of water and ice-1h in an isochoric (constant-volume) system. By making use of the Helmholtz potential F(temperature, volume), in contrast to the Gibbs potential G(temperature, pressure), we demonstrate significant changes in phase behavior when the specific volume of the container is constrained below that of ice-1h. We construct a T–V (temperature–volume) phase diagram for water and ice that features a broad two-phase equilibrium region, and we further derive an isochoric nucleation theory that reveals the existence of a critical confinement volume, on the order of microns, below which ice-1h is kinetically prohibited from forming.
Copper accumulation and the effect of chelation treatment on cerebral amyloid angiopathy compared to parenchymal amyloid plaques
Authors: Zhu Xiayoue , Victor Tiffany W , Ambi Ashwin , Sullivan Joseph K , Hatfield Joshua , Xu Feng , Miller Lisa M , Van Nostrand William E 
Published: February 2020

Abstract
Accumulation of fibrillar amyloid β-protein (Aβ) in parenchymal plaques and in blood vessels of the brain, the latter condition known as cerebral amyloid angiopathy (CAA), are hallmark pathologies of Alzheimer’s disease (AD) and related disorders. Cerebral amyloid deposits have been reported to accumulate various metals, most notably copper and zinc. Here we show that, in human AD, copper is preferentially accumulated in amyloid-containing brain blood vessels compared to parenchymal amyloid plaques. In light of this observation, we evaluated the effects of reducing copper levels in Tg2576 mice, a transgenic model of AD amyloid pathologies. The copper chelator, tetrathiomolybdate (TTM), was administered to twelve month old Tg2576 mice for a period of five months. Copper chelation treatment significantly reduced both CAA and parenchymal plaque load in Tg2576 mice. Further, copper chelation reduced parenchymal plaque copper content but had no effect on CAA copper levels in this model. These findings indicate that copper is associated with both CAA deposits and parenchymal amyloid plaques in humans, but less in Tg2576 mice. TTM only reduces copper levels in plaques in Tg2576 mice. Reducing copper levels in the brain may beneficially lower amyloid pathologies associated with AD.
Exploration of the Relationship Between Gut Microbiota and Polycystic Ovary Syndrome (PCOS): a Review
Authors: Zhao Xiaoxuan , Jiang Yuepeng , Xi Hongyan , Chen Lu , Feng Xiaoling 
Published: February 2020

AbstractPolycystic ovary syndrome (PCOS) is an endocrine and metabolic syndrome (MS) with a complex etiology, and its pathogenesis is not yet clear. In recent years, the correlation between gut microbiota (GM) and metabolic disease has become a hot topic in research, leading to a number of new ideas about the etiology and pathological mechanisms of PCOS. The literature shows that GM can cause insulin resistance, hyperandrogenism, chronic inflammation and metabolic syndrome (obesity, diabetes) and may contribute to the development of PCOS by influencing energy absorption, the pathways of short chain fatty acids (SCFA), lipopolysaccharides, choline and bile acids, intestinal permeability and the brain–gut axis. As part of the treatment of PCOS, fecal microbiota transplantation, supplementation with prebiotics and traditional Chinese medicine can be used to regulate GM and treat disorders. This article reviews possible mechanisms and treatment options for PCOS, based on methods which target the GM, and offers new ideas for the treatment of PCOS.
Delocalization in two and three-dimensional Rydberg gases
Authors: Abumwis G , Eiles Matthew T , Eisfeld Alexander 
Published: February 2020

Abstract
As was recently shown in Abumwis et al (2020 Phys. Rev. Lett.
124 193401), many eigenstates of a random Rydberg gas with resonant dipole–dipole interactions are highly delocalized. Although the high degree of delocalization is generic to various types of power-law interactions and to both two and three-dimensional systems, in their detailed aspects the coherence distributions are sensitive to these parameters and vary dramatically between different systems. We calculate the eigenstates of both two and three-dimensional gases and quantify their delocalization throughout the atoms in the gas using a coherence measure. By contrasting the angular dependence of the dipole–dipole interaction with an isotropic interaction we obtain additional information about the generic physical principles underlying random interacting systems. We also investigate the density of states and microwave absorption spectra to obtain information about the types of measurements where these delocalized states play a role, and to check that these delocalized eigenstates are robust against various types of perturbation.
Locomotor transition: how squid jet from water to air
Authors: Hou T G , Yang X B , Wang T M , Liang J H , Li S W , Fan Y B 
Published: February 2020

Abstract
The amazing multi-modal locomotion of flying squid helps to achieve fast-speed migration and predator-escape behavior. Observation of flying squid has been rarely reported in recent years, since it is challenging to clearly record the flying squid’s aquatic-aerial locomotion in a marine environment. The existing reports of squid-flying events are rare and merely record the in-air motion. Therefore, the water-air locomotor transition of flying squid is still unknown. This paper proposes the idea of using CFD to simulate the process of the flying squid (Sthenoteuthis oualaniensis (S. oualaniensis)) launching from water into air. The results for the first time reveal the flow field information of squid in launching phase and show the kinematic parameters of flying squid in quantification. Both a trailing jet and pinch-off vortex rings are formed to generate launching thrust, and the formation number L

ω
/D

ω
is 5.22, demonstrating that the jet strategy is to produce greater time-averaged thrust rather than higher propulsion efficiency. The results also indicate that the maximum flying speed negatively correlates with the launch angle, indicating that a lower launch angle could result in a larger flying speed for the flying squid to escape. These findings explore the multi-modal locomotion of flying squid from a new perspective, helping to explain the trade-off strategy of water-to-air transition, and further enhance the performance of aquatic-aerial vehicles.
Perspectives on quantum transduction
Authors: Lauk Nikolai , Sinclair Neil , Barzanjeh Shabir , Covey Jacob P , Saffman Mark , Spiropulu Maria , Simon Christoph 
Published: February 2020

Abstract
Quantum transduction, the process of converting quantum signals from one form of energy to another, is an important area of quantum science and technology. The present perspective article reviews quantum transduction between microwave and optical photons, an area that has recently seen a lot of activity and progress because of its relevance for connecting superconducting quantum processors over long distances, among other applications. Our review covers the leading approaches to achieving such transduction, with an emphasis on those based on atomic ensembles, opto-electro-mechanics, and electro-optics. We briefly discuss relevant metrics from the point of view of different applications, as well as challenges for the future.
Guided patchwork kriging to develop highly transferable thermal conductivity prediction models
Authors: Juneja Rinkle , Singh Abhishek K 
Published: February 2020

Abstract
The machine learning models developed on a dataset comprising particular class of materials show poor transferability across different classes. The problem can be partially solved by increasing the variability in the dataset at the cost of prediction accuracy. To develop a model on a highly variable database, we propose a localized regression based patchwork kriging approach for capturing most of the complex details in the data. In this approach, the data is partitioned into smaller regions with shared patches of few datapoints across the neighboring boundaries. Local regression functions are developed in each partition with a constrain to give similar performance at the boundary. Out of 17 different properties tried for partitioning the data, the decomposition with respect to target output κ

l
gave local models with unprecedented accuracies. The partitioning with respect to κ

l
, however, requires its estimate for any unknown compound beforehand. To address this, we developed a global model for the entire database. The global model accurately predicts the order of magnitude of κ

l
for the compounds in the dataset and hence, directs them towards a particular partition for more accurate prediction. We define this stepwise approach as guided patchwork kriging, which can be applied to develop highly accurate transferable prediction models.
Essentiality-specific pathogenicity prioritization gene score to improve filtering of disease sequence data
Authors: Alyousfi Dareen , Baralle Diana , Collins Andrew 
Published: February 2020

Abstract
The causal genetic variants underlying more than 50% of single gene (monogenic) disorders are yet to be discovered. Many patients with conditions likely to have a monogenic basis do not receive a confirmed molecular diagnosis which has potential impacts on clinical management. We have developed a gene-specific score, essentiality-specific pathogenicity prioritization (ESPP), to guide the recognition of genes likely to underlie monogenic disease variation to assist in filtering of genome sequence data. When a patient genome is sequenced, there are frequently several plausibly pathogenic variants identified in different genes. Recognition of the single gene most likely to include pathogenic variation can guide the identification of a causal variant. The ESPP score integrates gene-level scores which are broadly related to gene essentiality. Previous work towards the recognition of monogenic disease genes proposed a model with increasing gene essentiality from ‘non-essential’ to ‘essential’ genes (for which pathogenic variation may be incompatible with survival) with genes liable to contain disease variation positioned between these two extremes. We demonstrate that the ESPP score is useful for recognizing genes with high potential for pathogenic disease-related variation. Genes classed as essential have particularly high scores, as do genes recently recognized as strong candidates for developmental disorders. Through the integration of individual gene-specific scores, which have different properties and assumptions, we demonstrate the utility of an essentiality-based gene score to improve sequence genome filtering.