bluuebunny/crossref_metadata_2025_split huggingface dataset:
Excitatory and inhibitory lateral interactions effects on contrast detection are modulated by tRNS
Authors: Battaglini L. , Contemori G. , Fertonani A. , Miniussi C. , Coccaro A. , Casco C. 
Published: December 2019

AbstractContrast sensitivity for a Gabor signal is affected by collinear high-contrast Gabor flankers. The flankers reduce (inhibitory effect) or increase (facilitatory effect) sensitivity, at short (2λ) and intermediate (6λ) target-to-flanker separation respectively. We investigated whether these inhibitory/facilitatory sensitivity effects are modulated by transcranial random noise stimulation (tRNS) applied to the occipital and frontal cortex of human observers during task performance. Signal detection theory was used to measure sensitivity (d’) and the Criterion (C) in a contrast detection task, performed with sham or tRNS applied over the occipital or the frontal cortex. After occipital stimulation results show a tRNS-dependent increased sensitivity for the single Gabor signal of low but not high contrast. Moreover, results suggest a dissociation of the tRNS effect when the Gabor signal is presented with the flankers, consisting in a general increased sensitivity at 2λ where the flankers had an inhibitory effect (reduction of inhibition) and a decreased sensitivity at 6λ where the flankers had a facilitatory effect on the Gabor signal (reduction of facilitation). After a frontal stimulation, no specific effect of the tRNS was found. We account for these complex interactions between tRNS and flankers by assuming that tRNS not only enhances feedforward input from the Gabor signal to the cortex, but also enhances the excitatory or inhibitory lateral intracortical input from the flankers. The boosted lateral input depends on the excitation-inhibition (E/I) ratio, namely when the lateral input is weak, it is boosted by tRNS with consequent modification of the contrast-dependent E/I ratio.
Modelling heme-mediated brain injury associated with cerebral malaria in human brain cortical organoids
Authors: Harbuzariu Adriana , Pitts Sidney , Cespedes Juan Carlos , Harp Keri Oxendine , Nti Annette , Shaw Andrew P. , Liu Mingli , Stiles Jonathan K. 
Published: December 2019

AbstractHuman cerebral malaria (HCM), a severe encephalopathy associated with Plasmodium falciparum infection, has a 20–30% mortality rate and predominantly affects African children. The mechanisms mediating HCM-associated brain injury are difficult to study in human subjects, highlighting the urgent need for non-invasive ex vivo human models. HCM elevates the systemic levels of free heme, which damages the blood-brain barrier and neurons in distinct regions of the brain. We determined the effects of heme on induced pluripotent stem cells (iPSCs) and a three-dimensional cortical organoid system and assessed apoptosis and differentiation. We evaluated biomarkers associated with heme-induced brain injury, including a pro-inflammatory chemokine, CXCL-10, and its receptor, CXCR3, brain-derived neurotrophic factor (BDNF) and a receptor tyrosine-protein kinase, ERBB4, in the organoids. We then tested the neuroprotective effect of neuregulin-1 (NRG-1) against heme treatment in organoids. Neural stem and mature cells differentially expressed CXCL-10, CXCR3, BDNF and ERBB4 in the developing organoids and in response to heme-induced neuronal injury. The organoids underwent apoptosis and structural changes that were attenuated by NRG-1. Thus, cortical organoids can be used to model heme-induced cortical brain injury associated with HCM pathogenesis as well as for testing agents that reduce brain injury and neurological sequelae.
Structural basis for the activation and inhibition of Sirtuin 6 by quercetin and its derivatives
Authors: You Weijie , Zheng Wei , Weiss Sandra , Chua Katrin F. , Steegborn Clemens 
Published: December 2019

AbstractMammalian Sirtuin 6 (Sirt6) is an NAD+-dependent protein deacylase regulating metabolism and chromatin homeostasis. Sirt6 activation protects against metabolic and aging-related diseases, and Sirt6 inhibition is considered a cancer therapy. Available Sirt6 modulators show insufficient potency and specificity, and even partially contradictory Sirt6 effects were reported for the plant flavone quercetin. To understand Sirt6 modulation by quercetin-based compounds, we analysed their binding and activity effects on Sirt6 and other Sirtuin isoforms and solved crystal structures of compound complexes with Sirt6 and Sirt2. We find that quercetin activates Sirt6 via the isoform-specific binding site for pyrrolo[1,2-a]quinoxalines. Its inhibitory effect on other isoforms is based on an alternative binding site at the active site entrance. Based on these insights, we identified isoquercetin as a ligand that can discriminate both sites and thus activates Sirt6 with increased specificity. Furthermore, we find that quercetin derivatives that inhibit rather than activate Sirt6 exploit the same general Sirt6 binding site as the activators, identifying it as a versatile allosteric site for Sirt6 modulation. Our results thus provide a structural basis for Sirtuin effects of quercetin-related compounds and helpful insights for Sirt6-targeted drug development.
Parameters Influencing Cavitation Within Vials Subjected to Drop Shock
Authors: Valotta Rodrigues Rafael , Puryear Meagen , Sederstrom Donn , Lengsfeld Corinne S. 
Published: December 2019

AbstractThe pharmaceutical industry has made improvements to mitigate protein degradation during the drug manufacturing process, storage, and transportation. However, there is less quality control after the manufacturer releases the drug. Previous research has shown that drop shock due to mishandling and accidental dropping of therapeutic vials may cause cavitation, aggregation, and particle formation. In this study, the cavitation behavior of Deionized (DI) water and 10mM L-Histidine buffer solution which were subjected to drop shock by hand dropping were investigated to study the effects of vial materials, solutions, fill volumes, drop heights, and internal vial geometries. A Phantom v7 high-speed camera was used to record images at a rate of 66,700 frames per second of the vials as they underwent drop shock. These videos were then reviewed to find the angle of impact, and to determine if there was cavitation. The results indicate that decreasing fill height by using a smaller fill volume or larger diameter vials were found to mitigate cavitation across drop heights. Secondly, results indicate there is a significant difference between the cavitation behavior of glass and plastic vials, and plastic had more cavitation cases. Lastly, there was not a significant difference in the occurrence of cavitation between DI water and L-Histidine buffer solution.
SimpactCyan 1.0: An Open-source Simulator for Individual-Based Models in HIV Epidemiology with R and Python Interfaces
Authors: Liesenborgs Jori , Hendrickx Diana M. , Kuylen Elise , Niyukuri David , Hens Niel , Delva Wim 
Published: December 2019

AbstractSimpactCyan is an open-source simulator for individual-based models in HIV epidemiology. Its core algorithm is written in C++ for computational efficiency, while the R and Python interfaces aim to make the tool accessible to the fast-growing community of R and Python users. Transmission, treatment and prevention of HIV infections in dynamic sexual networks are simulated by discrete events. A generic “intervention” event allows model parameters to be changed over time, and can be used to model medical and behavioural HIV prevention programmes. First, we describe a more efficient variant of the modified Next Reaction Method that drives our continuous-time simulator. Next, we outline key built-in features and assumptions of individual-based models formulated in SimpactCyan, and provide code snippets for how to formulate, execute and analyse models in SimpactCyan through its R and Python interfaces. Lastly, we give two examples of applications in HIV epidemiology: the first demonstrates how the software can be used to estimate the impact of progressive changes to the eligibility criteria for HIV treatment on HIV incidence. The second example illustrates the use of SimpactCyan as a data-generating tool for assessing the performance of a phylodynamic inference framework.
Physiological resistance alters behavioral response of Tetranychus urticae to acaricides
Authors: Adesanya Adekunle W. , Beauchamp Michael J. , Lavine Mark D. , Lavine Laura C. , Zhu Fang , Walsh Doug B. 
Published: December 2019

AbstractMultiple acaricide resistance in Tetranychus urticae continues to threaten crop production globally, justifying the need to adequately study resistance for sustainable pest management. Most studies on acaricide resistance have focused on the acute contact toxicity of acaricides with little or no information on the behavioral responses elicited after acaricide exposure. Furthermore, the impact of physiological resistance on these behavioral responses remains unknown in most pest species, including T. urticae. We tested the effect of acaricide resistance on contact toxicity, irritancy and repellency of mitochondrial electron transport inhibitor of complex I (MET-I) and mite growth inhibitor (MGI) acaricides on multiple T. urticae strains. We also tested whether acaricides with similar physiological target site/mode of action also elicit similar behavioral effects on T. urticae strains. MET-I acaricides (fenazaquin, fenpyroximate, and pyrabiden) and MGIs (clofentezine, hexythiazox and etoxazole) elicited a dose-dependent irritant and repellent effect on T. urticae. Selection of strains for physiological resistance to these acaricides affected the behavioral response of T. urticae, especially in MET-I resistant strains, that showed reduced irritancy and repellency to MET-I acaricides. Behavioral response also affected the oviposition of T. urticae, where strains generally showed preferential oviposition away from the acaricides. The outcome of this study highlights negative consequences of acaricide resistance that can potentially affect T. urticae management.
Effect of diaphragm and abdominal muscle training on pelvic floor strength and endurance: results of a prospective randomized trial
Authors: Zachovajeviene B. , Siupsinskas L. , Zachovajevas P. , Venclovas Z. , Milonas D. 
Published: December 2019

AbstractPelvic floor muscles (PFMs) play a crucial role in urinary continence. Therefore, training the PFMs remains the most popular conservative treatment for urinary incontinence (UI). The effect of training other body muscles on the PFMs is unclear and mostly hypothetical. The objective of our study was to evaluate the effectiveness of postoperative diaphragm muscle, abdominal muscle and PFM training on PFM strength (PFMS) and endurance (PFME) as well as on UI in men after radical prostatectomy (RP). Per-protocol PFMS, PFME and urine loss measurements were performed at 1, 3, and 6 months postoperatively. The primary endpoints were PFMS and PFME differences among the study groups. The secondary endpoint was the correlation between UI and PFMS and PFME. In total, 148 men were randomized to the treatment groups. An increase in PFMS and PFME was observed in all groups compared to baseline (p < 0.001). The greatest difference in PFMS was in the PFM training group, but diaphragm training had the best effect on PFME. The highest (from moderate to strong) correlation between UI and PFME and PFMS (r = −0.61 and r = −0.89, respectively) was observed in the diaphragm training group. Despite different but significant effects on PFMS and PFME, all rehabilitation-training programmes decreased UI in men after RP.
Degradation and mineralization of 4-tert-butylphenol in water using Fe-doped TiO2 catalysts
Authors: Makhatova Ardak , Ulykbanova Gaukhar , Sadyk Shynggys , Sarsenbay Kali , Atabaev Timur Sh. , Inglezakis Vassilis J. , Poulopoulos Stavros G. 
Published: December 2019

AbstractIn the present work, the photocatalytic degradation and mineralization of 4-tert-butylphenol in water was studied using Fe-doped TiO2 nanoparticles under UV light irradiation. Fe-doped TiO2 catalysts (0.5, 1, 2 and 4 wt.%) were prepared using wet impregnation and characterized via SEM/EDS, XRD, XRF and TEM, while their photocatalytic activity and stability was attended via total organic carbon, 4-tert-butyl phenol, acetic acid, formic acid and leached iron concentrations measurements. The effect of H2O2 addition was also examined. The 4% Fe/TiO2 demonstrated the highest photocatalytic efficiency in terms of total organic carbon removal (86%). The application of UV/H2O2 resulted in 31% total organic carbon removal and 100% 4-t-butylphenol conversion, however combining Fe/TiO2 catalysts with H2O2 under UV irradiation did not improve the photocatalytic performance. Increasing the content of iron on the catalyst from 0.5 to 4% considerably decreased the intermediates formed and increased the production of carbon dioxide. The photocatalytic degradation of 4-tert-butylphenol followed pseudo-second order kinetics. Leaching of iron was observed mainly in the case of 4% Fe/TiO2, but it was considered negligible taking into account the iron load on catalysts. The electric energy per order was found in the range of 28–147 kWh/m3/order and increased with increasing the iron content of the catalyst.
Mass spectrometry reveals the presence of specific set of epigenetic DNA modifications in the Norway spruce genome
Authors: Yakovlev Igor A. , Gackowski Daniel , Abakir Abdulkadir , Viejo Marcos , Ruzov Alexey , Olinski Ryszard , Starczak Marta , Fossdal Carl Gunnar , Krutovsky Konstantin V. 
Published: December 2019

Abstract5-Methylcytosine (5mC) is an epigenetic modification involved in regulation of gene expression in metazoans and plants. Iron-(II)/α-ketoglutarate-dependent dioxygenases can oxidize 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC). Although these oxidized forms of 5mC may serve as demethylation intermediates or contribute to transcriptional regulation in animals and fungi, experimental evidence for their presence in plant genomes is ambiguous. Here, employing reversed-phase HPLC coupled with sensitive mass spectrometry, we demonstrated that, unlike 5caC, both 5hmC and 5fC are detectable in non-negligible quantities in the DNA of a conifer, Norway spruce. Remarkably, whereas 5hmC content of spruce DNA is approximately 100-fold lower relative to human colorectal carcinoma cells, the levels of both - 5fC and a thymine base modification, 5-hydroxymethyluracil, are comparable in these systems. We confirmed the presence of modified DNA bases by immunohistochemistry in Norway spruce buds based on peroxidase-conjugated antibodies and tyramide signal amplification. Our results reveal the presence of specific range of noncanonical DNA bases in conifer genomes implying potential roles for these modifications in plant development and homeostasis.
Fast media optimization for mixotrophic cultivation of Chlorella vulgaris
Authors: Ward Valerie C. A. , Rehmann Lars 
Published: December 2019

AbstractMicroalgae can accumulate large proportions of their dry cell weight as storage lipids when grown under appropriate nutrient limiting conditions. While a high ratio of carbon to nitrogen is often cited as the primary mode of triggering lipid accumulation in microalgae, fast optimization strategies to increase lipid production for mixotrophic cultivation have been difficult to developed due to the low cell densities of algal cultures, and consequently the limited amount of biomass available for compositional analysis. Response surface methodologies provide a power tool for assessing complex relationships such as the interaction between the carbon source and nitrogen source. A 15 run Box-Behnken design performed in shaker flasks was effective in studying the effect of carbon, nitrogen, and magnesium on the growth rate, maximum cell density, lipid accumulation rate, and glucose consumption rate. Using end-point dry cell weight and total lipid content as assessed by direct transesterification to FAME, numerical optimization resulted in a significant increase in lipid content from 18.5 ± 0.76% to 37.6 ± 0.12% and a cell density of 5.3 ± 0.1 g/L to 6.1 ± 0.1 g/L between the centre point of the design and the optimized culture conditions. The presented optimization process required less than 2 weeks to complete, was simple, and resulted in an overall lipid productivity of 383 mg/L·d.
Investigation of the cause of reduced sugar content in Kiyomi tangor fruit of Ziyang xiangcheng (Citrus junos Sieb. ex Tanaka) rootstock
Authors: Dong Tiantian , Xiong Bo , Huang Shengjia , Liao Ling , Qiu Xia , Sun Guochao , He Yunzhenzi , Duan Changwen , Wang Xiaojia , Zhang Xu , Li Sichen , Zhu Jin , Wang Zhihui 
Published: December 2019

AbstractZiyang xiangcheng (Citrus junos Sieb. ex Tanaka) (Cj) rootstock is effective in Citrus production; however, when Cj rootstock was used, sugar content in Kiyomi tangor fruit was significantly lower than that in the fruit produced using Poncirus trifoliata (L.) Raf. rootstock (Pt). Therefore, using K. tangor, we explored the cause of this difference, determining sugar accumulation, sucrose-metabolism enzyme activities, and gene expression. Before ripening, sugar content in fruits with Cj rootstock was significantly lower than that in fruits with Pt rootstock, due to low fructose and sucrose content. Sucrose phosphate synthase (SPS) activity of Pt was higher than that of Cj in the early growth stage (at 90–210 days after anthesis), however it was opposite at 240–300 days after anthesis. Additionally, neutral invertase (NI) activity of Pt was higher than that of Cj. Gene expression in Pt was higher than that in Cj, but is was essentially the same at maturity. SPS and NI activities and CitSPS1 expression were positively correlated with sucrose, fructose, and glucose content, but CSCW1 expression was negatively correlated with the sugars. Overall, the weak flavour of K. tangor fruit with Cj rootstock was regulated by the sucrose metabolism-related enzymes and gene expression.
SP-D attenuates LPS-induced formation of human neutrophil extracellular traps (NETs), protecting pulmonary surfactant inactivation by NETs
Authors: Arroyo Raquel , Khan Meraj Alam , Echaide Mercedes , Pérez-Gil Jesús , Palaniyar Nades 
Published: December 2019

AbstractAn exacerbated amount of neutrophil extracellular traps (NETs) can cause dysfunction of systems during inflammation. However, host proteins and factors that suppress NET formation (NETosis) are not clearly identified. Here we show that an innate immune collectin, pulmonary surfactant protein-D (SP-D), attenuates lipopolysaccharide (LPS)-mediated NETosis in human neutrophils by binding to LPS. SP-D deficiency in mice (Sftpd−/−) leads to excess NET formation in the lungs during LPS-mediated inflammation. In the absence of SP-D, NETs inhibit the surface-active properties of lung surfactant, essential to prevent the collapse of alveoli, the air breathing structures of the lungs. SP-D reverses NET-mediated inhibition of surfactant and restores the biophysical properties of surfactant. To the best of our knowledge, this study establishes for the first time that (i) SP-D suppresses LPS-mediated NETosis, (ii) NETs inhibit pulmonary surfactant function in the absence of SP-D, and (iii) SP-D can restore NET-mediated inhibition of the surfactant system.
Immunomodulatory role of the extracellular matrix protein tenascin-C in neuroinflammation
Authors: Wiemann Susanne , Reinhard Jacqueline , Faissner Andreas 
Published: December 2019

The extracellular matrix (ECM) consists of a dynamic network of various macromolecules that are synthesized and released by surrounding cells into the intercellular space. Glycoproteins, proteoglycans and fibrillar proteins are main components of the ECM. In addition to general functions such as structure and stability, the ECM controls several cellular signaling pathways. In this context, ECM molecules have a profound influence on intracellular signaling as receptor-, adhesion- and adaptor-proteins.
Due to its various functions, the ECM is essential in the healthy organism, but also under pathological conditions. ECM constituents are part of the glial scar, which is formed in several neurodegenerative diseases that are accompanied by the activation and infiltration of glia as well as immune cells. Remodeling of the ECM modulates the release of pro- and anti-inflammatory cytokines affecting the fate of immune, glial and neuronal cells.
Tenascin-C is an ECM glycoprotein that is expressed during embryonic central nervous system (CNS) development. In adults it is present at lower levels but reappears under pathological conditions such as in brain tumors, following injury and in neurodegenerative disorders and is highly associated with glial reactivity as well as scar formation. As a key modulator of the immune response during neurodegeneration in the CNS, tenascin-C is highlighted in this mini-review.
In‐situ calibration technology of liquid level with precise laser ranging
Authors: Fan Baixing , Zhou Weihu , Luan Hao , Xiang Minzhi , Wang Deli 
Published: December 2019

Here, in order to calibrate the magnetostrictive liquid‐level meter in situ, a set of in‐situ calibration device for magnetostrictive liquid‐level meter is designed. The structure and working principle of the device are described, and the experimental test and error analysis are carried out for the parts of the in‐situ calibration device. Finally, according to the modern instrument and error theory, the accuracy of the calibration device is assessed, and the field calibration experiment of magnetostrictive liquid level gauge is carried out. The theoretical analysis and field experiment results show that the calibrated device can meet the in‐situ calibration requirements of the magnetostrictive liquid‐level meter with a range of 0–6 m and a precision of 1 mm.
Molecular complexity in pre-stellar cores: a 3 mm-band study of L183 and L1544
Authors: Lattanzi Valerio , Bizzocchi Luca , Vasyunin Anton I. , Harju Jorma , Giuliano Barbara M. , Vastel Charlotte , Caselli Paola 
Published: December 2019

Context.Pre-stellar cores (PSCs) are units of star formation. Besides representing early stages of the dynamical evolution leading to the formation of stars and planets, PSCs also provide a substrate for incipient chemical complexity in the interstellar space.Aims.Our aim is to understand the influence of external conditions on the chemical composition of PSCs. For this purpose, we compared molecular column densities in two typical PSCs, L183 and L1544, which are embedded in different environments.Methods.A single-pointing survey of L183 atλ= 3 mm was conducted using the IRAM 30-m single-dish antenna. This led to the detection of more than 100 emission lines from 46 molecular species. The molecular column densities and excitation temperatures derived from these lines were compared to the corresponding parameters in L1544. The data for L1544 were obtained from literature or publicly available surveys, and they were analysed using the same procedure as adopted for L183. An astrochemical model, previously developed for the interpretation of organic molecule emissions towards the methanol peak of L1544, was used to interpret the combined data.Results.Our analysis reveals clear chemical differences between the two PSCs. While L1544 is richer in carbon-bearing species, in particular carbon chains, oxygen-containing species are generally more abundant in L183. The results are well-reproduced by our chemical model.Conclusions.The observed chemical differentiation between the two PSCs is caused by the different environmental conditions: the core of L183 is deeply buried in the surrounding cloud, whereas L1544 lies close to the edge of the Taurus Molecular Cloud. The obscuration of L183 from the interstellar radiation field (ISRF) allows the carbon atoms to be locked in carbon monoxide, which ultimately leads to a large abundance of O-bearing species. In contrast, L1544, being more affected by the ISRF, can keep a fraction of carbon in atomic form, which is needed for the production of carbon chains.