bluuebunny/crossref_metadata_2025_split huggingface dataset:
Kosterlitz-Thouless melting of magnetic order in the triangular quantum Ising material TmMgGaO4
Authors: Li Han , Liao Yuan Da , Chen Bin-Bin , Zeng Xu-Tao , Sheng Xian-Lei , Qi Yang , Meng Zi Yang , Li Wei 
Published: February 2020

AbstractFrustrated magnets hold the promise of material realizations of exotic phases of quantum matter, but direct comparisons of unbiased model calculations with experimental measurements remain very challenging. Here we design and implement a protocol of employing many-body computation methodologies for accurate model calculations—of both equilibrium and dynamical properties—for a frustrated rare-earth magnet TmMgGaO4 (TMGO), which explains the corresponding experimental findings. Our results confirm TMGO is an ideal realization of triangular-lattice Ising model with an intrinsic transverse field. The magnetic order of TMGO is predicted to melt through two successive Kosterlitz–Thouless (KT) phase transitions, with a floating KT phase in between. The dynamical spectra calculated suggest remnant images of a vanishing magnetic stripe order that represent vortex–antivortex pairs, resembling rotons in a superfluid helium film. TMGO therefore constitutes a rare quantum magnet for realizing KT physics, and we further propose experimental detection of its intriguing properties.
Chemotaxis-driven delivery of nano-pathogenoids for complete eradication of tumors post-phototherapy
Authors: Li Min , Li Shuya , Zhou Han , Tang Xinfeng , Wu Yi , Jiang Wei , Tian Zhigang , Zhou Xuechang , Yang Xianzhu , Wang Yucai 
Published: February 2020

AbstractThe efficacy of nano-mediated drug delivery has been impeded by multiple biological barriers such as the mononuclear phagocyte system (MPS), as well as vascular and interstitial barriers. To overcome the abovementioned obstacles, we report a nano-pathogenoid (NPN) system that can in situ hitchhike circulating neutrophils and supplement photothermal therapy (PTT). Cloaked with bacteria-secreted outer membrane vesicles inheriting pathogen-associated molecular patterns of native bacteria, NPNs are effectively recognized and internalized by neutrophils. The neutrophils migrate towards inflamed tumors, extravasate across the blood vessels, and penetrate through the tumors. Then NPNs are rapidly released from neutrophils in response to inflammatory stimuli and subsequently taken up by tumor cells to exert anticancer effects. Strikingly, due to the excellent targeting efficacy, cisplatin-loaded NPNs combined with PTT completely eradicate tumors in all treated mice. Such a nano-platform represents an efficient and generalizable strategy towards in situ cell hitchhiking as well as enhanced tumor targeted delivery.
A CRISPR-Cas9-based reporter system for single-cell detection of extracellular vesicle-mediated functional transfer of RNA
Authors: de Jong Olivier G. , Murphy Daniel E. , Mäger Imre , Willms Eduard , Garcia-Guerra Antonio , Gitz-Francois Jerney J. , Lefferts Juliet , Gupta Dhanu , Steenbeek Sander C. , van Rheenen Jacco , El Andaloussi Samir , Schiffelers Raymond M. , Wood Matthew J. A. , Vader Pieter 
Published: February 2020

AbstractExtracellular vesicles (EVs) form an endogenous transport system for intercellular transfer of biological cargo, including RNA, that plays a pivotal role in physiological and pathological processes. Unfortunately, whereas biological effects of EV-mediated RNA transfer are abundantly studied, regulatory pathways and mechanisms remain poorly defined due to a lack of suitable readout systems. Here, we describe a highly-sensitive CRISPR-Cas9-based reporter system that allows direct functional study of EV-mediated transfer of small non-coding RNA molecules at single-cell resolution. Using this CRISPR operated stoplight system for functional intercellular RNA exchange (CROSS-FIRE) we uncover various genes involved in EV subtype biogenesis that play a regulatory role in RNA transfer. Moreover we identify multiple genes involved in endocytosis and intracellular membrane trafficking that strongly regulate EV-mediated functional RNA delivery. Altogether, this approach allows the elucidation of regulatory mechanisms in EV-mediated RNA transfer at the level of EV biogenesis, endocytosis, intracellular trafficking, and RNA delivery.
Reactant friendly hydrogen evolution interface based on di-anionic MoS2 surface
Authors: Luo Zhaoyan , Zhang Hao , Yang Yuqi , Wang Xian , Li Yang , Jin Zhao , Jiang Zheng , Liu Changpeng , Xing Wei , Ge Junjie 
Published: February 2020

AbstractEngineering the reaction interface to preferentially attract reactants to inner Helmholtz plane is highly desirable for kinetic advancement of most electro-catalysis processes, including hydrogen evolution reaction (HER). This, however, has rarely been achieved due to the inherent complexity for precise surface manipulation down to molecule level. Here, we build a MoS2 di-anionic surface with controlled molecular substitution of S sites by –OH. We confirm the –OH group endows the interface with reactant dragging functionality, through forming strong non-covalent hydrogen bonding to the reactants (hydronium ions or water). The well-conditioned surface, in conjunction with activated sulfur atoms (by heteroatom metal doping) as active sites, giving rise to up-to-date the lowest over potential and highest intrinsic activity among all the MoS2 based catalysts. The di-anion surface created in this study, with atomic mixing of active sites and reactant dragging functionalities, represents a effective di-functional interface for boosted kinetic performance.
Nrf2 positively regulates autophagy antioxidant response in human bronchial epithelial cells exposed to diesel exhaust particles
Authors: Frias Daniela Perroni , Gomes Raquel Labiapari Nunes , Yoshizaki Kelly , Carvalho-Oliveira Regiani , Matsuda Monique , Junqueira Mara de Souza , Teodoro Walcy Rosolia , Vasconcellos Pérola de Castro , Pereira Daniela Cristina de Almeida , Conceição Paulo Roberto da , Saldiva Paulo Hilário Nascimento , Mauad Thais , Macchione Mariangela 
Published: February 2020

AbstractDiesel exhaust particles (DEP) are known to generate reactive oxygen species in the respiratory system, triggering cells to activate antioxidant defence mechanisms, such as Keap1-Nrf2 signalling and autophagy. The aim of this study was to investigate the relationship between the Keap1-Nrf2 signalling and autophagy pathways after DEP exposure. BEAS-2B cells were transfected with silencing RNA (siRNA) specific to Nrf2 and exposed to DEP. The relative levels of mRNA for Nrf2, NQO1, HO-1, LC3B, p62 and Atg5 were determined using RT-PCR, while the levels of LCB3, Nrf2, and p62 protein were determined using Western blotting. The autophagy inhibitor bafilomycin caused a significant decrease in the production of Nrf2, HO-1 and NQO1 compared to DEPs treatment, whereas the Nrf2 activator sulforaphane increased the LC3B (p = 0.020) levels. BEAS-2B cells exposed to DEP at a concentration of 50 μg/mL for 2 h showed a significant increase in the expression of LC3B (p = 0.001), p62 (p = 0.008), Nrf2 (p = 0.003), HO-1 (p = 0.001) and NQO1 (p = 0.015) genes compared to control. In siRNA-transfected cells, the LC3B (p < 0.001), p62 (p = 0.001) and Atg5 (p = 0.024) mRNA levels and the p62 and LC3II protein levels were decreased, indicating that Nrf2 modulated the expression of autophagy markers (R < 1). These results imply that, in bronchial cells exposed to DEP, the Nrf2 system positively regulates autophagy to maintain cellular homeostasis.
Geoarchaeological evidence of the AD 1642 Yellow River flood that destroyed Kaifeng, a former capital of dynastic China
Authors: Storozum Michael , Lu Peng , Wang Sanying , Chen Panpan , Yang Ruixia , Ge Qifeng , Cao Jinping , Wan Junwei , Wang Hui , Qin Zhen , Liu Haiwang , Park Edward 
Published: February 2020

AbstractRising global temperatures will increase the number of extreme weather events, creating new challenges for cities around the world. Archaeological research on the destruction and subsequent reoccupation of ancient cities has the potential to reveal geological and social dynamics that have historically contributed to making urban settings resilient to these extreme weather events. Using a combination of archaeological and geological methods, we examine how extreme flood events at Kaifeng, a former capital of dynastic China, have shaped the city’s urban resilience. Specifically, we focus on an extreme Yellow River flood event in AD 1642 that historical records suggest killed around 300,000 people living in Kaifeng. Our recent archaeological excavations have discovered compelling geological and archaeological evidence that corroborates these documents, revealing that the AD 1642 Yellow River flood destroyed Kaifeng’s inner city, entombing the city and its inhabitants within meters of silt and clay. We argue that the AD 1642 flood was extraordinarily catastrophic because Kaifeng’s city walls only partly collapsed, entrapping most of the flood waters within the city. Both the geology of the Yellow River floods as well as the socio-political context of Kaifeng shaped the city’s resilience to extreme flood events.
Benchmarking seeding strategies for spreading processes in social networks: an interplay between influencers, topologies and sizes
Authors: Montes Felipe , Jaramillo Ana María , Meisel Jose D. , Diaz-Guilera Albert , Valdivia Juan A. , Sarmiento Olga L. , Zarama Roberto 
Published: February 2020

AbstractThe explosion of network science has permitted an understanding of how the structure of social networks affects the dynamics of social contagion. In community-based interventions with spill-over effects, identifying influential spreaders may be harnessed to increase the spreading efficiency of social contagion, in terms of time needed to spread all the largest connected component of the network. Several strategies have been proved to be efficient using only data and simulation-based models in specific network topologies without a consensus of an overall result. Hence, the purpose of this paper is to benchmark the spreading efficiency of seeding strategies related to network structural properties and sizes. We simulate spreading processes on empirical and simulated social networks within a wide range of densities, clustering coefficients, and sizes. We also propose three new decentralized seeding strategies that are structurally different from well-known strategies: community hubs, ambassadors, and random hubs. We observe that the efficiency ranking of strategies varies with the network structure. In general, for sparse networks with community structure, decentralized influencers are suitable for increasing the spreading efficiency. By contrast, when the networks are denser, centralized influencers outperform. These results provide a framework for selecting efficient strategies according to different contexts in which social networks emerge.
Spatial epidemiological patterns suggest mechanisms of land-sea transmission for Sarcocystis neurona in a coastal marine mammal
Authors: Burgess Tristan L. , Tinker M. Tim , Miller Melissa A. , Smith Woutrina A. , Bodkin James L. , Murray Michael J. , Nichol Linda M. , Saarinen Justin A. , Larson Shawn , Tomoleoni Joseph A. , Conrad Patricia A. , Johnson Christine K. 
Published: February 2020

AbstractSarcocystis neurona was recognised as an important cause of mortality in southern sea otters (Enhydra lutris nereis) after an outbreak in April 2004 and has since been detected in many marine mammal species in the Northeast Pacific Ocean. Risk of S. neurona exposure in sea otters is associated with consumption of clams and soft-sediment prey and is temporally associated with runoff events. We examined the spatial distribution of S. neurona exposure risk based on serum antibody testing and assessed risk factors for exposure in animals from California, Washington, British Columbia and Alaska. Significant spatial clustering of seropositive animals was observed in California and Washington, compared with British Columbia and Alaska. Adult males were at greatest risk for exposure to S. neurona, and there were strong associations with terrestrial features (wetlands, cropland, high human housing-unit density). In California, habitats containing soft sediment exhibited greater risk than hard substrate or kelp beds. Consuming a diet rich in clams was also associated with increased exposure risk. These findings suggest a transmission pathway analogous to that described for Toxoplasma gondii, with infectious stages traveling in freshwater runoff and being concentrated in particular locations by marine habitat features, ocean physical processes, and invertebrate bioconcentration.
Association between subjective symptoms and obesity and postoperative recurrence in differentiated thyroid cancer: a matched-pair analysis
Authors: Wu Yu-Ying , Cheng Shih-Ping , Chiou Piao-Yi , Liu Chieh-Yu 
Published: February 2020

AbstractSeveral patients with thyroid cancer experience symptom distress after diagnosis and surgery. Data on the association between symptomatology and disease recurrence are limited. A retrospective review of a prospectively maintained database was performed, and 57 patients who had recurrence after operation of differentiated thyroid cancer were identified. Controlling for age, sex, surgery, and tumour stage, 114 patients without recurrent disease were selected by case-control matching. Subjective symptoms at follow-up visits were extracted from medical records and classified into three symptom clusters: pharyngolaryngeal, psychoneurological, and gastrointestinal. Compared to the control group, patients with recurrence had higher symptom totals in the pharyngolaryngeal (P < 0.001) and psychoneurological clusters (P = 0.005). Symptom score >3 yielded a sensitivity of 61.4% and a specificity of 80.7% to predict recurrence. Multivariate Cox regression analysis revealed that high symptom score (hazard ratio [HR] = 4.184), family history of thyroid cancer (HR = 2.463), and obesity (HR = 1.981) were independently associated with disease recurrence. Taken together, the likelihood of postoperative recurrence seemed to increase with high self-perceived symptom burden, family history, and obesity in patients with thyroid cancer. The results could be applied to the recurrence surveillance and symptomatic management of thyroid cancer post-operation.
Examining sterically demanding lysine analogs for histone lysine methyltransferase catalysis
Authors: Temimi Abbas H. K. Al , Tran Vu , Teeuwen Ruben S. , Altunc Arthur J. , Amatdjais-Groenen Helene I. V. , White Paul B. , Lenstra Danny C. , Proietti Giordano , Wang Yali , Wegert Anita , Blaauw Richard H. , Qian Ping , Ren Wansheng , Guo Hong , Mecinović Jasmin 
Published: February 2020

AbstractMethylation of lysine residues in histone proteins is catalyzed by S-adenosylmethionine (SAM)-dependent histone lysine methyltransferases (KMTs), a genuinely important class of epigenetic enzymes of biomedical interest. Here we report synthetic, mass spectrometric, NMR spectroscopic and quantum mechanical/molecular mechanical (QM/MM) molecular dynamics studies on KMT-catalyzed methylation of histone peptides that contain lysine and its sterically demanding analogs. Our synergistic experimental and computational work demonstrates that human KMTs have a capacity to catalyze methylation of slightly bulkier lysine analogs, but lack the activity for analogs that possess larger aromatic side chains. Overall, this study provides an important chemical insight into molecular requirements that contribute to efficient KMT catalysis and expands the substrate scope of KMT-catalyzed methylation reactions.
In situ molecular imaging of adsorbed protein films in water indicating hydrophobicity and hydrophilicity
Authors: Yu Jiachao , Zhou Yufan , Engelhard Mark , Zhang Yuchen , Son Jiyoung , Liu Songqin , Zhu Zihua , Yu Xiao-Ying 
Published: February 2020

AbstractIn situ molecular imaging of protein films adsorbed on a solid surface in water was realized by using a vacuum compatible microfluidic interface and time-of-flight secondary ion mass spectrometry (ToF-SIMS). Amino acid fragments from such hydrated protein films are observed and identified in the positive ion mode and the results are in agreement with reported works on dry protein films. Moreover, water clusters from the hydrated protein films have been observed and identified in both the positive and negative ion mode for a series protein films. Thus, the detailed composition of amino acids and water molecules in the hydrated protein films can be characterized, and the protein water microstructures can be revealed by the distinct three-dimensional spatial distribution reconstructed from in situ liquid ToF-SIMS molecular imaging. Furthermore, spectral principal component analysis of amino acid fragment peaks and water cluster peaks provides unique insights into the water cluster distribution, hydrophilicity, and hydrophobicity of hydrated adsorbed protein films in water.
The GEF Cytohesin-2/ARNO Mediates Resistin induced Phenotypic Switching in Vascular Smooth Muscle Cells
Authors: Heun Yvonn , Gräff Pascal , Lagara Aikaterini , Schelhorn Romina , Mettler Ramona , Pohl Ulrich , Mannell Hanna 
Published: February 2020

AbstractThe pro-inflammatory adipokine resistin induces a phenotypic switch of vascular smooth muscle cells (VSMC), a process decisive for atherosclerosis, including morphological changes, increased synthetic activity, proliferation and migration. The guanine-exchange factor ARNO (Cytohesin-2) has been shown to be important for morphological changes and migration of other cell types. In this study we dissected the role of ARNO in resistin induced VSMC phenotypic switching and signalling. Firstly, treatment with the cytohesin inhibitor Secin H3 prevented the resistin mediated induction of morphological changes in VSMC. Secondly, Secin H3 treatment as well as expression of an inactive ARNO (EK) reduced resistin induced VSMC synthetic activity, as assessed by matrix metalloproteinase 2 (MMP-2) expression, as well as the migration into a wound in vitro compared to ARNO WT expression. Thirdly, we found ARNO to influence MMP-2 expression and migration via activation of p38 MAPK and the JNK/AP-1 pathway. Interestingly, these processes were shown to be dependent on the binding of PIP3, as mutation of the ARNO PH-domain inhibited VSMC migration, MMP-2 expression as well as p38 MAPK and JNK signalling. Thus, we demonstrate that ARNO is an important link in resistin dependent cell signalling leading to morphological changes, MMP-2 production and migration of VSMC.
Surface Dielectric Barrier Discharge plasma: a suitable measure against fungal plant pathogens
Authors: Ambrico Paolo F. , Šimek Milan , Rotolo Caterina , Morano Massimo , Minafra Angelantonio , Ambrico Marianna , Pollastro Stefania , Gerin Donato , Faretra Francesco , De Miccolis Angelini Rita M. 
Published: February 2020

AbstractFungal diseases seriously affect agricultural production and the food industry. Crop protection is usually achieved by synthetic fungicides, therefore more sustainable and innovative technologies are increasingly required. The atmospheric pressure low-temperature plasma is a novel suitable measure. We report on the effect of plasma treatment on phytopathogenic fungi causing quantitative and qualitative losses of products both in the field and postharvest. We focus our attention on thein vitrodirect inhibitory effect of non-contact Surface Dielectric Barrier Discharge on conidia germination ofBotrytis cinerea,Monilinia fructicola,Aspergillus carbonariusandAlternaria alternata. A few minutes of treatment was required to completely inactivate the fungi on an artificial medium. Morphological analysis of spores by Scanning Electron Microscopy suggests that the main mechanism is plasma etching due to Reactive Oxygen Species or UV radiation. Spectroscopic analysis of plasma generated in humid air gives the hint that the rotational temperature of gas should not play a relevant role being very close to room temperature.In vivoexperiments on artificially inoculated cherry fruits demonstrated that inactivation of fungal spores by the direct inhibitory effect of plasma extend their shelf life. Pre-treatment of fruits before inoculation improve the resistance to infections maybe by activating defense responses in plant tissues.
Quantification of the content of cannabidiol in commercially available e-liquids and studies on their thermal and photo-stability
Authors: Mazzetti Carlo , Ferri Emanuele , Pozzi Monica , Labra Massimo 
Published: February 2020

AbstractCannabidiol (CBD) has become a buzzword in many products that have bloomed on the market. The scientific community and some authorities have recently raised concerns on the quality of these products. In particular, the discrepancy between the labelled and the real content of cannabidiol in liquids for e-cigarettes seems to be emerging as a major issue. Furthermore, to-date no studies have been carried out on the chemical stability upon storage of these type of products. The aim of this work was to investigate the accuracy in labelling of thirteen commercially e-liquids containing CBD and the effects of different storage conditions on their quality. The results showed that only 38% of samples were labelled within a ±10% variance from their labels. Stability tests showed a maximum degradation of CBD when samples were stored at 37 °C for 30 days with average values up to 20%. The effect of light was lower but still significant with averages values up to 15% degradation after 30 days. In conclusion, we believe that health authorities should regulate and control this market more stringently to protect customers and their health. Furthermore, our stability tests have shown that if clear indications are provided on the best storage conditions, the quality of these products can be mostly preserved.
Genetic and pharmacological inhibition of inflammasomes reduces the survival of Mycobacterium tuberculosis strains in macrophages
Authors: Subbarao Sathyavani , Sanchez-Garrido Julia , Krishnan Nitya , Shenoy Avinash R. , Robertson Brian D. 
Published: February 2020

AbstractMycobacterium tuberculosis infection causes high rates of morbidity and mortality. Host-directed therapy may enhance the immune response, reduce tissue damage and shorten treatment duration. The inflammasome is integral to innate immune responses but over-activation has been described in tuberculosis (TB) pathology and TB-immune reconstitution syndrome. Here we explore how clinical isolates differentially activate the inflammasome and how inflammasome inhibition can lead to enhanced bacterial clearance. Wild-type, Nlrp3−/−/Aim2−/−, Casp1/11−/− and Asc−/− murine bone-marrow derived macrophages (BMDMs) were infected with laboratory strain M. tuberculosis H37Rv or clinical isolates from various lineages. Inflammasome activation and bacterial numbers were measured, and pharmacological inhibition of NLRP3 was achieved using MCC950. Clinical isolates of M. tuberculosis differed in their ability to activate inflammasomes. Beijing isolates had contrasting effects on IL-1β and caspase-1 activation, but all clinical isolates induced lower IL-1β release than H37Rv. Our studies suggest the involvement of NLRP3, AIM2 and an additional unknown sensor in IL-1β maturation. Pharmacological blockade of NLRP3 with MCC950 reduced bacterial survival, and combined treatment with the antimycobacterial drug rifampicin enhanced the effect. Modulating the inflammasome is an attractive adjunct to current anti-mycobacterial therapy that warrants further investigation.