bluuebunny/crossref_metadata_2025_split huggingface dataset:
Diverse sensitivities of TRPA1 from different mosquito species to thermal and chemical stimuli
Authors: Li Tianbang , Saito Claire T. , Hikitsuchi Tomoyuki , Inoguchi Yoshihiro , Mitsuishi Honami , Saito Shigeru , Tominaga Makoto 
Published: December 2019

AbstractTemperature and odors profoundly affect the behavior of animals. Transient receptor potential channel, subfamily A, member 1 (TRPA1) functions as a polymodal nociceptor for sensing both vital environmental cues in insects. Mosquitoes are recognized as disease vectors, and many efforts have been devoted to investigations of their host-seeking behaviors and repellents. However, the physiological characteristics of mosquito TRPA1 have not been systematically studied. We identified multiple alternative splice variants of the TrpA1 gene from Anopheles gambiae, Anopheles stephensi, Aedes aegypti and Culex pipiens pallens mosquitoes. And we performed comparative analyses of the responses of mosquito TRPA1s to heat or chemical stimuli with calcium-imaging and whole-cell patch-clamp methods. Comparison of TRPA1 among four mosquito species from different thermal niches revealed that TRPA1 of Culex pipiens pallens inhabiting the temperate zone had a lower temperature threshold for heat-evoked activation, which was supported by the in vivo heat-avoidance test. Notably, the chemosensitivity of mosquito TRPA1 channels revealed differences not only between variants but also among species. Moreover, we discovered three novel mosquito TRPA1 agonists. Thermal niches selection and evolutionary trajectories significantly affect the functional properties of mosquito TRPA1, which represents a hallmark of the behaviors that may permit the design of improved mosquito control methods.
A genetic characterization of Korean waxy maize (Zea mays L.) landraces having flowering time variation by RNA sequencing
Authors: Yi Gibum , Shin Hosub , Yu Seung Hwa , Park Jeong Eun , Kang Taegu , Huh Jin Hoe 
Published: December 2019

AbstractMaize is the second-most produced crop in the Korean peninsula and has been continuously cultivated since the middle of the 16th century, when it was originally introduced from China. Even with this extensive cultivation history, the diversity and properties of Korean landraces have not been investigated at the nucleotide sequence level. We collected 12 landraces with various flowering times and performed RNA-seq in the early vegetative stage. The transcriptomes of 12 Korean landraces have been analyzed for their genetic variations in coding sequence and genetic relationships to other maize germplasm. The Korean landraces showed specific genetic characteristics and were closely related to a Chinese inbred line. Flowering-time related gene profiles pointed to multiple causes for the variation of flowering time within Korean landraces; the profiles revealed significant positive and negative correlations among genes, allowing us to infer possible mechanisms for flowering time variation in maize. Our results demonstrate the value of transcriptome-based genetic and gene expression profiles for information on possible breeding resources, which is particularly needed in Korean waxy landraces.
Identification of a key gene module associated with glucocorticoid- induced derangement in bone mineral density in patients with asthma
Authors: Lee Suh-Young , Won Ha-Kyeong , Kim Byung-Keun , Kim Sae-Hoon , Chang Yoon-Seok , Cho Sang-Heon , Kelly H. William , Tantisira Kelan G. , Park Heung-Woo 
Published: December 2019

AbstractDerangement in bone mineral density (BMD) caused by glucocorticoid is well-known. The present study aimed to find key biological pathways associated with low BMD after glucocorticoid treatment in asthmatics using gene expression profiles of peripheral blood cells. We utilized immortalized B cells (IBCs) from 32 childhood asthmatics after multiple oral glucocorticoid bursts and peripheral blood mononuclear cells (PBMCs) from 17 adult asthmatics after a long-term use of oral glucocorticoid. We searched co-expressed gene modules significantly related with the BMD Z score in childhood asthmatics and tested if these gene modules were preserved and significantly associated with the BMD Z score in adult asthmatics as well. We identified a gene module composed of 199 genes significantly associated with low BMD in both childhood and adult asthmatics. The structure of this module was preserved across gene expression profiles. We found that the cellular metabolic pathway was significantly enriched in this module. Among 18 hub genes in this module, we postulated that 2 genes, CREBBP and EP300, contributed to low BMD following a literature review. A novel biologic pathway identified in this study highlighted a gene module and several genes as playing possible roles in the pathogenesis of glucocorticoid- induced derangement in BMD.
Pilot in vivo studies on transcutaneous boiling histotripsy in porcine liver and kidney
Authors: Khokhlova Tatiana D. , Schade George R. , Wang Yak-Nam , Buravkov Sergey V. , Chernikov Valeriy P. , Simon Julianna C. , Starr Frank , Maxwell Adam D. , Bailey Michael R. , Kreider Wayne , Khokhlova Vera A. 
Published: December 2019

AbstractBoiling histotripsy (BH) is a High Intensity Focused Ultrasound (HIFU) method for precise mechanical disintegration of target tissue using millisecond-long pulses containing shocks. BH treatments with real-time ultrasound (US) guidance allowed by BH-generated bubbles were previously demonstrated ex vivo and in vivo in exposed porcine liver and small animals. Here, the feasibility of US-guided transabdominal and partially transcostal BH ablation of kidney and liver in an acute in vivo swine model was evaluated for 6 animals. BH parameters were: 1.5 MHz frequency, 5–30 pulses of 1–10 ms duration per focus, 1% duty cycle, peak acoustic powers 0.9–3.8 kW, sonication foci spaced 1–1.5 mm apart in a rectangular grid with 5–15 mm linear dimensions. In kidneys, well-demarcated volumetric BH lesions were generated without respiratory gating and renal medulla and collecting system were more resistant to BH than cortex. The treatment was accelerated 10-fold by using shorter BH pulses of larger peak power without affecting the quality of tissue fractionation. In liver, respiratory motion and aberrations from subcutaneous fat affected the treatment but increasing the peak power provided successful lesion generation. These data indicate BH is a promising technology for transabdominal and transcostal mechanical ablation of tumors in kidney and liver.
Determining the Efficacy of a Hybridizing Agent in Wheat (Triticum aestivum L.)
Authors: Easterly Amanda C. , Stroup Walter W. , Garst Nicholas , Belamkar Vikas , Sarazin Jean-Benoit , Moittié Thierry , Ibrahim Amir M. H. , Rudd Jackie C. , Souza Edward , Baenziger P. Stephen 
Published: December 2019

AbstractHybrid wheat (Triticumspp.) has the potential to boost yields and enhance production under changing climates to feed the growing global population. Production of hybrid wheat seed relies on male sterility, the blocking of pollen production, to prevent self-pollination. One method of preventing self-pollination in the female plants is to apply a chemical hybridizing agent (CHA). However, some combinations of CHA and genotypes have lower levels of sterility, resulting in decreased hybrid purity. Differences in CHA efficacy are a challenge in producing hybrid wheat lines for commercial and experimental use. Our primary research questions were to estimate the levels of sterility for wheat genotypes treated with a CHA and determine the best way to analyze differences. We applied the CHA sintofen (1-(4-chlorphyl)-1,4-dihydro-5-(2-methoxyethoxy)-4-oxocinnoline-3-carboxylic acid; Croisor 100) to 27 genotypes in replicate. After spraying, we counted seed in bagged female heads to evaluate CHA efficacy and CHA-by-genotype interaction. Using logit and probit models with a threshold of 7 seeds, we found differences among genotypes in 2015. Sterility was higher in 2016 and fewer genotypic differences were found. When CHA-induced sterilization is less uniform as in 2015, zero-inflated and hurdle count models were superior to standard mixed models. These models calculate mean seed number and fit data with limit-bounded scales collected by agronomists and plant breeders to compare genotypic differences. These analyses can assist in selecting parents and identifying where additional optimization of CHA application needs to occur. There is little work in the literature examining the relationship between CHAs and genotypes, making this work fundamental to the future of hybrid wheat breeding.
Low vector competence in sylvatic mosquitoes limits Zika virus to initiate an enzootic cycle in South America
Authors: Fernandes Rosilainy S. , Bersot Maria I. , Castro Marcia G. , Telleria Erich Loza , Ferreira-de-Brito Anielly , Raphael Lidiane M. , Bonaldo Myrna C. , Lourenço-de-Oliveira Ricardo 
Published: December 2019

AbstractZika virus (ZIKV) has spread in the Americas since 2015 and the potential establishment of a sylvatic transmission cycle in the continent has been hypothesized. We evaluated vector competence of five sylvatic Neotropical mosquito species to two ZIKV isolates. Distinct batches of Haemagogus leucoceleanus, Sabethes albiprivus, Sabethes identicus, Aedes terrens and Aedes scapularis females were respectively orally challenged and inoculated intrathoracically with ZIKV. Orally challenged mosquitoes were refractory or exhibited low infection rates. Viral dissemination was detected only in Hg. leucocelaenus, but with very low rates. Virus was not detected in saliva of any mosquito orally challenged with ZIKV, regardless of viral isolate and incubation time. When intrathoracically injected, ZIKV disseminated in high rates in Hg. leucocelaenus, Sa. identicus and Sa. albpiprivus, but low transmission was detected in these species; very low dissemination and no transmission was detected in Ae. terrens and Ae. scapularis. Together these results suggest that genetically determined tissue barriers, especially in the midgut, play a vital role in inhibiting ZIKV for transmission in the tested sylvatic mosquito species. Thus, an independent enzootic transmission cycle for ZIKV in South America is very unlikely.
Neferine induces autophagy-dependent cell death in apoptosis-resistant cancers via ryanodine receptor and Ca2+-dependent mechanism
Authors: Law Betty Yuen Kwan , Michelangeli Francesco , Qu Yuan Qing , Xu Su-Wei , Han Yu , Mok Simon Wing Fai , Dias Ivo Ricardo de Seabra Rodrigues , Javed Masood-ul-Hassan , Chan Wai-Kit , Xue Wei-Wei , Yao Xiao-Jun , Zeng Wu , Zhang Hui , Wang Jing-Rong , Liu Liang , Wong Vincent Kam Wai 
Published: December 2019

AbstractResistance of cancer cells to chemotherapy is a significant clinical concern and mechanisms regulating cell death in cancer therapy, including apoptosis, autophagy or necrosis, have been extensively investigated over the last decade. Accordingly, the identification of medicinal compounds against chemoresistant cancer cells via new mechanism of action is highly desired. Autophagy is important in inducing cell death or survival in cancer therapy. Recently, novel autophagy activators isolated from natural products were shown to induce autophagic cell death in apoptosis-resistant cancer cells in a calcium-dependent manner. Therefore, enhancement of autophagy may serve as additional therapeutic strategy against these resistant cancers. By computational docking analysis, biochemical assays, and advanced live-cell imaging, we identified that neferine, a natural alkaloid from Nelumbo nucifera, induces autophagy by activating the ryanodine receptor and calcium release. With well-known apoptotic agents, such as staurosporine, taxol, doxorubicin, cisplatin and etoposide, utilized as controls, neferine was shown to induce autophagic cell death in a panel of cancer cells, including apoptosis-defective and -resistant cancer cells or isogenic cancer cells, via calcium mobilization through the activation of ryanodine receptor and Ulk-1-PERK and AMPK-mTOR signaling cascades. Taken together, this study provides insights into the cytotoxic mechanism of neferine-induced autophagy through ryanodine receptor activation in resistant cancers.
Dynamics of clusterin protein expression in the brain and plasma following experimental traumatic brain injury
Authors: Das Gupta Shalini , Lipponen Anssi , Paldanius Kaisa M. A. , Puhakka Noora , Pitkänen Asla 
Published: December 2019

AbstractProgress in the preclinical and clinical development of neuroprotective and antiepileptogenic treatments for traumatic brain injury (TBI) necessitates the discovery of prognostic biomarkers for post-injury outcome. Our previous mRNA-seq data revealed a 1.8–2.5 fold increase in clusterin mRNA expression in lesioned brain areas in rats with lateral fluid-percussion injury (FPI)-induced TBI. On this basis, we hypothesized that TBI leads to increases in the brain levels of clusterin protein, and consequently, increased plasma clusterin levels. For evaluation, we induced TBI in adult male Sprague-Dawley rats (n = 80) by lateral FPI. We validated our mRNA-seq findings with RT-qPCR, confirming increased clusterin mRNA levels in the perilesional cortex (FC 3.3, p < 0.01) and ipsilateral thalamus (FC 2.4, p < 0.05) at 3 months post-TBI. Immunohistochemistry revealed a marked increase in extracellular clusterin protein expression in the perilesional cortex and ipsilateral hippocampus (7d to 1 month post-TBI), and ipsilateral thalamus (14d to 12 months post-TBI). In the thalamus, punctate immunoreactivity was most intense around activated microglia and mitochondria. Enzyme-linked immunoassays indicated that an acute 15% reduction, rather than an increase in plasma clusterin levels differentiated animals with TBI from sham-operated controls (AUC 0.851, p < 0.05). Our findings suggest that plasma clusterin is a candidate biomarker for acute TBI diagnosis.
Long-range propagation of protons in single-crystal VO2 involving structural transformation to HVO2
Authors: Muraoka Keita , Kanki Teruo 
Published: December 2019

AbstractVanadium dioxide (VO2) is a strongly correlated electronic material with a metal-insulator transition (MIT) near room temperature. Ion-doping to VO2 dramatically alters its transport properties and the MIT temperature. Recently, insulating hydrogenated VO2 (HVO2) accompanied by a crystal structure transformation from VO2 was experimentally observed. Despite the important steps taken towards realizing novel applications, essential physics such as the diffusion constant of intercalated protons and the crystal transformation energy between VO2 and HVO2 are still lacking. In this work, we investigated the physical parameters of proton diffusion constants accompanied by VO2 to HVO2 crystal transformation with temperature variation and their transformation energies. It was found that protons could propagate several micrometers with a crystal transformation between VO2 and HVO2. The proton diffusion speed from HVO2 to VO2 was approximately two orders higher than that from VO2 to HVO2. The long-range propagation of protons leads to the possibility of realizing novel iontronic applications and energy devices.
KCTD15 is overexpressed in human childhood B-cell acute lymphoid leukemia
Authors: Smaldone Giovanni , Beneduce Giuliana , Incoronato Mariarosaria , Pane Katia , Franzese Monica , Coppola Luigi , Cordella Angela , Parasole Rosanna , Ripaldi Mimmo , Nassa Giovanni , Soricelli Andrea , Vitagliano Luigi , Mirabelli Peppino , Salvatore Marco 
Published: December 2019

AbstractLeukemic cells originate from the malignant transformation of undifferentiated myeloid/lymphoid hematopoietic progenitors normally residing in bone marrow. As the precise molecular mechanisms underlying this heterogeneous disease are yet to be disclosed, the identification and the validation of novel actors in leukemia is of extreme importance. Here, we show that KCTD15, a member of the emerging class of KCTD ((K)potassium Channel Tetramerization Domain containing) proteins, is strongly upregulated in patients affected by B-cell type acute lymphoblastic leukemia (B-ALL) and in continuous cell lines (RS4;11, REH, TOM-1, SEM) derived from this form of childhood leukemia. Interestingly, KCTD15 downregulation induces apoptosis and cell death suggesting that it has a role in cellular homeostasis and proliferation. In addition, stimulation of normal lymphocytes with the pokeweed mitogen leads to increased KCTD15 levels in a fashion comparable to those observed in proliferating leukemic cells. In this way, the role of KCTD15 is likely not confined to the B-ALL pathological state and extends to activation and proliferation of normal lymphocytes. Collectively, data here presented indicate that KCTD15 is an important and hitherto unidentified player in childhood lymphoid leukemia, and its study could open a new scenario for the identification of altered and still unknown molecular pathways in leukemia.
Maskless, rapid manufacturing of glass microfluidic devices using a picosecond pulsed laser
Authors: Wlodarczyk Krystian L. , Hand Duncan P. , Maroto-Valer M. Mercedes 
Published: December 2019

AbstractConventional manufacturing of glass microfluidic devices is a complex, multi-step process that involves a combination of different fabrication techniques, typically photolithography, chemical/dry etching and thermal/anodic bonding. As a result, the process is time-consuming and expensive, in particular when developing microfluidic prototypes or even manufacturing them in low quantity. This report describes a fabrication technique in which a picosecond pulsed laser system is the only tool required to manufacture a microfluidic device from transparent glass substrates. The laser system is used for the generation of microfluidic patterns directly on glass, the drilling of inlet/outlet ports in glass covers, and the bonding of two glass plates together in order to enclose the laser-generated patterns from the top. This method enables the manufacturing of a fully-functional microfluidic device in a few hours, without using any projection masks, dangerous chemicals, and additional expensive tools, e.g., a mask writer or bonding machine. The method allows the fabrication of various types of microfluidic devices, e.g., Hele-Shaw cells and microfluidics comprising complex patterns resembling up-scaled cross-sections of realistic rock samples, suitable for the investigation of CO2 storage, water remediation and hydrocarbon recovery processes. The method also provides a route for embedding small 3D objects inside these devices.
Individual and seasonal variation in contact rate, connectivity and centrality in red fox (Vulpes vulpes) social groups
Authors: Dorning Jo , Harris Stephen 
Published: December 2019

AbstractExamining temporal variation in social connectivity and relating this to individual behaviour can help understand the role of individuals within social groups. Although red foxes are solitary foragers, they form social groups at higher population densities. To investigate the effects of season, sex and status on social connectivity in red fox social groups, we set camera traps for four consecutive seasons to record contact rates and social network metrics at food patches in seven fox territories. Higher food availability was associated with higher contact rates. Individual contact rates peaked in different seasons depending on sex and social status. Dominant foxes held central network positions in all seasons but there was no consistent pattern in social connections within territories, suggesting a greater influence of features such as group size and composition on network structure than seasonal behaviour. Increased extraterritorial movements by males during winter contributed to a significant reduction in local network connectivity. Female network strength did not vary with season, suggesting that females play an important role in maintaining year-round group cohesion. These data advance our understanding of canid social systems, the benefits of group-living in solitary foraging carnivores, and the impacts of management interventions for an ecologically important species.
Straw phytolith for less hazardous open burning of paddy straw
Authors: Nguyen Anh T. Q. , Nguyen Minh N. 
Published: December 2019

AbstractRice production helps feed at least half of the world’s population but generates approximately one billion tonnes of straw residue per annum. On-site open burning of rice straw after harvesting is common in recent times because there has been less demand for rice straw to use as fuel and fodder. Due to health and climate change concerns, open burning, which results in biomass losses, smog and emissions of green house gases, e.g., CO2, has been widely criticized and banned in many countries. Little is known about the positive benefits of straw burning, such as field care (eradication of biotic diseases) or nutrient cycling. Herein, we propose a new viewpoint in which the burning of rice straw followed by cycling of the burned materials, including silica material (so-called phytolith), into soil is demonstrated as a CO2-sequestration strategy via buffering the soil CO2 flux and coupling CO2 with the silicon cycle.
An optimized, robust and reproducible protocol to generate well-differentiated primary nasal epithelial models from extremely premature infants
Authors: Martens Anke , Amann Gabriele , Schmidt Katy , Gaupmann René , Böhm Bianca , Dehlink Eleonora , Szépfalusi Zsolt , Förster-Waldl Elisabeth , Berger Angelika , Fyhrquist Nanna , Alenius Harri , Wisgrill Lukas 
Published: December 2019

AbstractExtremely premature infants are prone to severe respiratory infections, and the mechanisms underlying this exceptional susceptibility are largely unknown. Nasal epithelial cells (NEC) represent the first-line of defense and adult-derived ALI cell culture models show promising results in mimicking in vivo physiology. Therefore, the aim of this study was to develop a robust and reliable protocol for generating well-differentiated cell culture models from NECs of extremely premature infants. Nasal brushing was performed in 13 extremely premature infants at term corrected age and in 11 healthy adult controls to obtain NECs for differentiation at air-liquid interface (ALI). Differentiation was verified using imaging and functional analysis. Successful isolation and differentiation was achieved for 5 (38.5%) preterm and 5 (45.5%) adult samples. Preterm and adult ALI-cultures both showed well-differentiated morphology and ciliary function, however, preterm cultures required significantly longer cultivation times for acquiring full differentiation (44 ± 3.92 vs. 23 ± 1.83 days; p < 0.0001). Moreover, we observed that recent respiratory support may impair successful NECs isolation. Herewithin, we describe a safe, reliable and reproducible method to generate well-differentiated ALI-models from NECs of extremely premature infants. These models provide a valuable foundation for further studies regarding immunological and inflammatory responses and respiratory disorders in extremely premature infants.