bluuebunny/crossref_metadata_2025_split huggingface dataset:
Photodynamic inactivation of Leishmania braziliensis doubly sensitized with uroporphyrin and diamino-phthalocyanine activates effector functions of macrophages in vitro
Authors: Sharma Rohit , Viana Sayonara M. , Ng Dennis K. P. , Kolli Bala K. , Chang Kwang Poo , de Oliveira Camila I. 
Published: October 2020

AbstractPhotodynamic inactivation ofLeishmaniahas been shown to render them non-viable, but retain their immunological activities. Installation of dual photodynamic mechanisms ensures complete inactivation of species in theLeishmaniasubgenus, raising the prospect of their safe and effective application as whole-cell vaccines against leishmaniasis. Here, we report the successful extension of this approach toL. braziliensisin theVianniasubgenus, viz. genetic engineering of promastigotes for cytosolic accumulation of UV-sensitive uroporphyrin (URO) and their loading with red light excitable phthalocyanines (PC) that was cationized by chemical engineering. The transgenic strategy used previously producedL. braziliensistransfectants, which gave the same phenotype of aminolevulinate (ALA)-inducible uroporphyria as found inLeishmaniasubgenus, indicative of pre-subgenus evolutionary origin for similar genetic deficiencies in porphyrin/heme biosynthesis. In the present study, 12 independent clones were obtained and were invariably ALA-responsive, albeit to different extent for uroporphyrinogenesis and UV-inactivation. In a separate study,L. braziliensiswas also found, like otherLeishmaniaspp., to take up diamino-PC (PC2) for red light inactivation. In vitro interactions of a highly uroporphyrinogenic clone with primary macrophages were examined with the intervention of URO/PC2-medated double-photodynamic inactivation to ascertain its complete loss of viability. Doubly sensitizedL. braziliensistransfectants were photo-inactivated before (Strategy #1) or after (Strategy #2) loading of macrophages. In both cases, macrophages were found to take upL. braziliensisand degrade them rapidly in contrast to liveLeishmaniainfection. The effector functions of macrophages became upregulated following their loading withL. braziliensisphotodynamically inactivated by both strategies, including CD86 expression, and IL6 and NO production. This was in contrast to the immunosuppressive infection of macrophages with live parasites, marked by IL10 production. The results provide evidence that photodynamically inactivatedL. braziliensisare susceptible to the degradative pathway of macrophages with upregulation of immunity relevant cytokine and co-stimulatory markers. The relative merits of the two loading strategies with reference to previous experimental vaccination were discussed in light of the present findings withL. braziliensis.
Deep amoA amplicon sequencing reveals community partitioning within ammonia-oxidizing bacteria in the environmentally dynamic estuary of the River Elbe
Authors: Malinowski M. , Alawi M. , Krohn I. , Ruff S. , Indenbirken D. , Alawi M. , Karrasch M. , Lüschow R. , Streit W. R. , Timmermann G. , Pommerening-Röser A. 
Published: October 2020

AbstractThe community composition of betaproteobacterial ammonia-oxidizing bacteria (ß-AOB) in the River Elbe Estuary was investigated by high throughput sequencing of ammonia monooxygenase subunit A gene (amoA) amplicons. In the course of the seasons surface sediment samples from seven sites along the longitudinal profile of the upper Estuary of the Elbe were investigated. We observed striking shifts of the ß-AOB community composition according to space and time. Members of the Nitrosomonas oligotropha-lineage and the genus Nitrosospira were found to be the dominant ß-AOB within the river transect, investigated. However, continuous shifts of balance between members of both lineages along the longitudinal profile were determined. A noticeable feature was a substantial increase of proportion of Nitrosospira-like sequences in autumn and of sequences affiliated with the Nitrosomonas marina-lineage at downstream sites in spring and summer. Slightly raised relative abundances of sequences affiliated with the Nitrosomonas europaea/Nitrosomonas mobilis-lineage and the Nitrosomonas communis-lineage were found at sampling sites located in the port of Hamburg. Comparisons between environmental parameters and AOB-lineage (ecotype) composition revealed promising clues that processes happening in the fluvial to marine transition zone of the Elbe estuary are reflected by shifts in the relative proportion of ammonia monooxygenase sequence abundance, and hence, we propose ß-AOB as appropriate indicators for environmental dynamics and the ecological condition of the Elbe Estuary.
Essential roles of oncostatin M receptor β signaling in renal crystal formation in mice
Authors: Yamashita Shimpei , Komori Tadasuke , Kohjimoto Yasuo , Miyajima Atsushi , Hara Isao , Morikawa Yoshihiro 
Published: October 2020

AbstractOncostatin M (OSM), a member of the IL-6 family of cytokines, has important roles in renal diseases. The relationship between OSM and kidney stone disease, however, remains unclear. To investigate the roles of OSM in the development of kidney stone disease, we generated a mouse model of renal crystal formation using OSM receptor β (OSMRβ)-deficient mice (OSMRβ−/−mice). There were fewer renal crystal deposits in OSMRβ−/−mice than in wild-type (WT) mice. Crystal-binding molecules (osteopontin, annexin A1, and annexin A2), inflammatory cytokines (TNF-α and IL-1β), and fibrosis markers (TGF-β, collagen 1a2, and α-smooth muscle actin) were also decreased in the kidneys of OSMRβ−/−mice compared with those in WT mice. Immunofluorescence staining showed that OSMRβ was expressed in renal tubular epithelial cells (RTECs) and renal fibroblasts in the model of renal crystal formation. In the cultured RTECs and renal fibroblasts, OSM directly induced the expression of crystal-binding molecules and fibrosis markers. Expressions of inflammatory cytokines were increased by stimulation with OSM in cultured renal fibroblasts. OSM may promote the formation of renal crystal deposits by directly acting on RTECs and renal fibroblasts to produce crystal-binding molecules and inflammatory cytokines.
Effects of controlled-release urea combined with fulvic acid on soil inorganic nitrogen, leaf senescence and yield of cotton
Authors: Geng Jibiao , Yang Xiuyi , Huo Xianqi , Chen Jianqiu , Lei Shutong , Li Hui , Lang Ying , Liu Qianjin 
Published: October 2020

AbstractA split-plot field experiment was conducted in 2018–2019 to study the effects of nitrogen fertilizer types and fulvic acid (FA) rates on soil nitrogen and cotton growth. The nitrogen fertilizers included controlled-release urea (CRU) and urea, which were applied combined with three FA rates (90, 180 and 270 kg ha-1). The main plot was the nitrogen fertilizer type, and the subplot was the FA rate. The results showed that the lint yield of the FA180 treatment was 5.2–8.6% higher than the FA90 and FA270 treatments. Moreover, moderate FA application markedly improved the cotton leaf SPAD value (chlorophyll relative value), photosynthesis and chlorophyll fluorescence parameters compared with low and high FA rates. Replacing urea with CRU significantly increased the soil inorganic nitrogen and nitrogen use efficiency and also improved cotton fiber quality parameters. Meanwhile, the boll weight and seed yield of the CRU treatments were 1.5–8.4% and 3.3–19.1% higher, respectively, than the urea treatments. The interaction between nitrogen type and FA rate had a positive effect on cotton growth. Thus, the application of CRU combined with 180 kg ha-1 FA on cotton can not only improve the fiber quality and delay leaf senescence but also increase the yield and economic benefit.
Prevalence and viral loads of polyomaviruses BKPyV, JCPyV, MCPyV, TSPyV and NJPyV and hepatitis viruses HBV, HCV and HEV in HIV-infected patients in China
Authors: Zhou Xianfeng , Nakashima Kenji , Ito Masahiko , Zhang Xiaoling , Sakai Satoshi , Feng Changhua , Sun Huabao , Chen Haiying , Li Tian-Cheng , Suzuki Tetsuro 
Published: October 2020

AbstractHuman polyomaviruses (PyVs) and hepatitis viruses are often more prevalent or persistent in human immunodeficiency virus (HIV)-infected persons and the associated diseases are more abundant than in immunocompetent individuals. Here, we evaluated seroreactivities and viral loads of human PyVs and hepatitis viruses in HIV/AIDS patients and the general population in China in the combination antiretroviral therapy (cART) era. A total of 810 HIV-1-infected patients and age- and sex-matched HIV-negative individuals were enrolled to assess seroprevalence of PyVs BKPyV, JCPyV, MCPyV, TSPyV, and NJPyV and hepatitis viruses HBV, HCV, and HEV. 583 (72%) patients received cART, and among them, 31.2% had undetectable HIV RNA. While no significant difference was observed in prevalence of anti-PyV antibodies between HIV-positive and -negative groups, serum DNA positivity and DNA copy level of MCPyV were higher in the HIV-positive group. Among HIV-infected patients, BKPyV DNA positivity was significantly higher in patients with CD4 + cell counts < 200 cells/mm3 compared to those with CD4 + cell counts > 500 cells/mm3, suggesting possible reactivation caused by HIV-induced immune suppression. Higher HBV and HCV seropositivities but not HEV seropositivity were also observed in the HIV-positive group. Further correlation analyses demonstrated that HBV and HEV are potential risk factors for increased prevalence of PyV infection.
Antimicrobial activity, phytochemical screening of crude extracts, and essential oils constituents of two Pulicaria spp. growing in Sudan
Authors: Mohamed Ebtihal Alsadig Ahmed , Muddathir Ali Mahmoud , Osman Magda Abker 
Published: October 2020

AbstractThe search for plant extracts with highly antimicrobial activity has been increased nowadays. This study evaluated the antimicrobial activity of Pulicaria crispa (Forsk.) Oliv., and Pulicaria undulata (L.) C.A.Mey., which have been used traditionally in Sudan as insect replants. The antimicrobial activity was evaluated against six pathogenic microorganisms, four bacteria (two Gram-positive; Bacillus subtilis and Staphylococcus aureus, two Gram-negative; Escherichia coli, and Pseudomonas aeruginosa), and two fungi (Aspergillus niger and Candida albicans) using disc diffusion method. The extraction of the crude extracts was done by maceration. The essential oils were extracted by hydro-distillation. Phytochemical screening was done using reference method. Essential oils were analyzed using Gas Chromatography Mass Spectrometry. The results indicated that all used the microorganisms were sensitive to the plants extracts. Results of the preliminary phytochemical screening showed the presence of saponins, comarins, tannins, sterols, and triterpenes, and absence of alkaloids, anthraquinones, and flavonoids. Twenty-eight and forty-five constituents were identified in P. crispa and P. undulata, essential oils, respectively. The main constituents in the essential oil of P. crispa were 1,4-ditert butylbenzene (22.81%), caryophyllene (13.19%), carvone (11.80%), and neryl(s)-2-methylbutanoate (10.33%), and for P. undulata were camphor (44.48%), and thymyl acetate (10.31%). Data from this study could be used for developing of natural bioactive agents to improve human health.
Evidence of interactions between white sharks and large squids in Guadalupe Island, Mexico
Authors: Becerril-García Edgar E. , Bernot-Simon Daniela , Arellano-Martínez Marcial , Galván-Magaña Felipe , Santana-Morales Omar , Hoyos-Padilla Edgar M. 
Published: October 2020

AbstractShark-cephalopod interactions have been documented in trophic ecology studies around the world. However, there is little information about the encounters between white sharks Carcharodon carcharias and squids in the eastern North Pacific Ocean. Here we provide evidence of interactions between white sharks and large squids in the waters of Guadalupe Island, Mexico. Through the use of non-invasive techniques, we found the presence of evident scars made by large squids on the body of the white sharks, mainly on the head and trunk, of at least 14 sharks recorded during August–December in the years 2008, 2012, 2013, 2017 and 2019. The mean length of the white sharks was 3.7 m (SD ± 0.6; total length), although the majority of the sharks with scars were adult and subadult males (n = 9; 64%). One of these males was photographically recaptured during the same season in which the individual showed new scars, confirming that the squid-white shark interaction likely occurs near Guadalupe Island. Our results highlight the importance of the twilight zone for white sharks and the use of shared habitat and trophic interactions between squid and white sharks, in which future ecosystem studies should consider both species for management and conservation purposes.
Validation of a survival benefit estimator tool in a cohort of European kidney transplant recipients
Authors: Coca Armando , Arias-Cabrales Carlos , Valencia Ana Lucía , Burballa Carla , Bustamante-Munguira Juan , Redondo-Pachón Dolores , Acosta-Ochoa Isabel , Crespo Marta , Bustamante Jesús , Mendiluce Alicia , Pascual Julio , Pérez-Saéz María José 
Published: October 2020

AbstractPre-transplant prognostic scores help to optimize donor/recipient allocation and to minimize organ discard rates. Since most of these scores come from the US, direct application in non-US populations is not advisable. The Survival Benefit Estimator (SBE), built upon the Estimated Post-Transplant Survival (EPTS) and the Kidney Donor Profile Index (KDPI), has not been externally validated. We aimed to examine SBE in a cohort of Spanish kidney transplant recipients. We designed a retrospective cohort-based study of deceased-donor kidney transplants carried out in two different Spanish hospitals. Unadjusted and adjusted Cox models were applied for patient survival. Predictive models were compared using Harrell’s C statistics. SBE, EPTS and KDPI were independently associated with patient survival (p ≤ 0.01 in all models). Model discrimination measured with Harrell’s C statistics ranged from 0.57 (KDPI) to 0.69 (SBE) and 0.71 (EPTS). After adjustment, SBE presented similar calibration and discrimination power to that of EPTS. SBE tended to underestimate actual survival, mainly among high EPTS recipients/high KDPI donors. SBE performed acceptably well at discriminating post-transplant survival in a cohort of Spanish deceased-donor kidney transplant recipients, although its use as the main allocation guide, especially for high KDPI donors or high EPTS recipients requires further testing.
Determination of reference ranges for normal upper trapezius elasticity during different shoulder abduction using shear wave elastography: a preliminary study
Authors: Wang Lei , Xiang Xi , Zhu Bi-Hui , Qiu Li 
Published: October 2020

AbstractThe purpose of this study was to determine the reference ranges of normal upper trapezius (UT) elasticity during different shoulder abduction using shear wave elastography (SWE). Mean shear wave velocity (SWV) of UT elasticity in eighty healthy participants were measured at left and right shoulder 0° abduction and 90° passive abduction (L0°, R0°, L90°, R90°) with SWE. The effects of potential factors (gender, UT thickness, age, and body mass index) on UT elasticity were analyzed. The reference ranges of normal UT elasticity were calculated by using the normal distribution method. UT elasticity was significantly different among various shoulder abduction (P < 0.0001). UT elasticity was significantly higher in males at both L90° (P < 0.05) and R90° (P < 0.01) than in females. The reference ranges of normal UT elasticity were 2.90–4.01 m/s at L0° and 3.01–4.29 m/s at R0°, and were 4.90–6.40 m/s in males and 4.40–6.20 m/s in females at L90°, 5.20–7.02 m/s in males and 4.71–6.80 m/s in females at R90°. Our results suggest that gender should be considered when determining the reference ranges of normal UT elasticity at L90° and R90° with SWE. These values may provide quantitative baseline measurements for the assessment of UT muscle strain in the future.
The causality from solar irradiation to ocean heat content detected via multi-scale Liang–Kleeman information flow
Authors: Wang Gang , Zhao Chang , Zhang Min , Zhang Yuanling , Lin Min , Qiao Fangli 
Published: October 2020

AbstractSolar irradiation is the primary driving force for the Earth’s climate system. However, we are still short of powerful tools to study the variability of the Earth’s climate due to the solar activity. Here we apply the Liang–Kleeman information flow to quantify the causality from Total Solar Irradiance (TSI) to the global ocean heat content anomaly (OHCA). It reveals that the information flow from TSI to OHCA varies in both time and space. We adapt the method into a multi-scale version which describes the variation of information flow on different timescales. In different ocean basins, the significant information flow from TSI to OHCA varies on different timescales, which could be several decades, much longer than the timescale of the correlation revealed by wavelet coherence. Then we calculate the information flow from TSI to the first three expansion coefficients of the OHCA Empirical Orthogonal Functions. The results indicate that TSI is a part cause of the El Niño-Southern Oscillation (ENSO), especially in the 1970s. In the recent 40 years, the contribution of TSI to the variation of the OHCA becomes less significant probably due to the increasing influence of human activity on the climate system.
Parental contribution to trisomy in heterozygous androgenetic complete moles
Authors: Usui Hirokazu , Sato Asuka , Shozu Makio 
Published: October 2020

AbstractComplete hydatidiform moles (CHMs) comprise a proliferative trophoblastic disorder and are known to be androgenetic and diploid. Androgenetic CHMs are classified as having monospermic and dispermic origins. Rarely, some CHMs have other genetic constitutions, such as biparental diploid or tetraploid. Previous studies have shown the possibility that androgenetic heterozygous CHMs have an additional chromosome with high frequency. This study aimed to comprehensively analyse the molecular karyotyping of androgenetic dispermic CHMs and the parental contribution of their additional chromosomes. Single-nucleotide polymorphism arrays were performed with the genomic DNA of CHMs and patients. The B allele frequency and selected B allele frequency plotting of CHM were visualised. Among the 31 dispermic CHMs, eight showed trisomy and one showed double trisomy; of the 10 additional chromosomes, seven were of maternal original and three were of paternal origin. In addition, three disomic chromosomes comprised one maternal and one paternal chromosome, although these should theoretically have had two paternal chromosomes in the case of androgenetic CHMs. The subclassification of heterozygous CHMs, with or without maternal contribution, is a new approach and could be a candidate indicator of gestational trophoblastic neoplasia risk.
Study on the spatial-temporal variation in evapotranspiration in China from 1948 to 2018
Authors: Zhang Feng , Geng Mengqing , Wu Qiulan , Liang Yong 
Published: October 2020

AbstractIt is of great significance for the efficient utilization of water resources and the construction of the ecological environment in China to fully understand the evolution process of the spatial-temporal pattern of evapotranspiration (ET). With the use of the v2.0 and v2.1 ET data sets combined with the Global Land Data Assimilation System and Noah model, this paper selects pixels as the basic research object to analyse the spatial-temporal variation in ET in China during the 71 years from 1948 to 2018. We first applied the TFPW-MK test to study the annual ET trend in China throughout the 71-year period, including the ET trend of each month from January to December and the annual total ET trend. Moreover, we examined the spatial variation in these trends. In addition, we calculated the variation coefficient of the time series of each pixel’s ET throughout the 71-year period and the variation coefficient of the spatial distribution of ET in each year to analyse the spatial-temporal fluctuations in ET in the study area. Finally, the Hurst index was adopted to evaluate the future ET trend. Based on these analyses, we observed the following novel spatial-temporal characteristics of ET: from 1948 to 2018, (1) the ET in most regions covered by 89.5% of all pixels in China exhibits an increasing trend. (2) The ET trend in China varies greatly with the change in months, and many regions show the most or least obvious increasing trend (or decreasing trend) at different times. (3) The area with an increasing trend is the largest in May and the smallest in December, and more than half of the pixels in all months of a year reveal an increasing trend. (4) In the northeast, west and south regions of China, the monthly fluctuation in the ET trend is relatively large, which indicates that the ET trend in these regions is greatly affected by the month. (5) The fluctuation in ET in China is larger in the north than it is in the south and larger in the west than it is in the east. The most stable fluctuation occurs in East China. (6) The ET trend of almost all the pixels in the study area remains consistent from 1948 to 2018, and there are large areas with a notable continuity. This results in the spatial variation in ET in the study area increasing.
FAM20C directly binds to and phosphorylates Periostin
Authors: Lin Ju-Hsien , Lin I-Ping , Ohyama Yoshio , Mochida Hanna , Kudo Akira , Kaku Masaru , Mochida Yoshiyuki 
Published: October 2020

AbstractIt is widely accepted that FAM20C functions as a Golgi casein kinase and has large numbers of kinase substrates within the secretory pathway. It has been previously reported that FAM20C is required for maintenance of healthy periodontal tissues. However, there has been no report that any extracellular matrix molecules expressed in periodontal tissues are indeed substrates of FAM20C. In this study, we sought to identify the binding partner(s) of FAM20C. FAM20C wild-type (WT) and its kinase inactive form D478A proteins were generated. These proteins were electrophoresed and the Coomassie Brilliant Blue (CBB)-positive bands were analyzed to identify FAM20C-binding protein(s) by Mass Spectrometry (MS) analysis. Periostin was found by the analysis and the binding between FAM20C and Periostin was investigated in cell cultures and in vitro. We further determined the binding region(s) within Periostin responsible for FAM20C-binding. Immunolocalization of FAM20C and Periostin was examined using mouse periodontium tissues by immunohistochemical analysis. In vitro kinase assay was performed using Periostin and FAM20C proteins to see whether FAM20C phosphorylates Periostin in vitro. We identified Periostin as one of FAM20C-binding proteins by MS analysis. Periostin interacted with FAM20C in a kinase-activity independent manner and the binding was direct in vitro. We further identified the binding domain of FAM20C in Periostin, which was mapped within Fasciclin (Fas) I domain 1–4 of Periostin. Immunolocalization of FAM20C was observed in periodontal ligament (PDL) extracellular matrix where that of Periostin was also immunostained in murine periodontal tissues. FAM20C WT, but not D478A, phosphorylated Periostin in vitro. Consistent with the overlapped expression pattern of FAM20C and Periostin, our data demonstrate for the first time that Periostin is a direct FAM20C-binding partner and that FAM20C phosphorylates Periostin in vitro.