bluuebunny/crossref_metadata_2025_split huggingface dataset:
New perspectives on Neanderthal dispersal and turnover from Stajnia Cave (Poland)
Authors: Picin Andrea , Hajdinjak Mateja , Nowaczewska Wioletta , Benazzi Stefano , Urbanowski Mikołaj , Marciszak Adrian , Fewlass Helen , Bosch Marjolein D. , Socha Paweł , Stefaniak Krzysztof , Żarski Marcin , Wiśniewski Andrzej , Hublin Jean-Jacques , Nadachowski Adam , Talamo Sahra 
Published: September 2020

AbstractThe Micoquian is the broadest and longest enduring cultural facies of the Late Middle Palaeolithic that spread across the periglacial and boreal environments of Europe between Eastern France, Poland, and Northern Caucasus. Here, we present new data from the archaeological record of Stajnia Cave (Poland) and the paleogenetic analysis of a Neanderthal molar S5000, found in a Micoquian context. Our results demonstrate that the mtDNA genome of Stajnia S5000 dates to MIS 5a making the tooth the oldest Neanderthal specimen from Central-Eastern Europe. Furthermore, S5000 mtDNA has the fewest number of differences to mtDNA of Mezmaiskaya 1 Neanderthal from Northern Caucasus, and is more distant from almost contemporaneous Neanderthals of Scladina and Hohlenstein-Stadel. This observation and the technological affinity between Poland and the Northern Caucasus could be the result of increased mobility of Neanderthals that changed their subsistence strategy for coping with the new low biomass environments and the increased foraging radius of gregarious animals. The Prut and Dniester rivers were probably used as the main corridors of dispersal. The persistence of the Micoquian techno-complex in South-Eastern Europe infers that this axis of mobility was also used at the beginning of MIS 3 when a Neanderthal population turnover occurred in the Northern Caucasus.
Chemical pollution imposes limitations to the ecological status of European surface waters
Authors: Posthuma Leo , Zijp Michiel C. , De Zwart Dick , Van de Meent Dik , Globevnik Lidija , Koprivsek Maja , Focks Andreas , Van Gils Jos , Birk Sebastian 
Published: September 2020

AbstractAquatic ecosystems are affected by man-made pressures, often causing combined impacts. The analysis of the impacts of chemical pollution is however commonly separate from that of other pressures and their impacts. This evolved from differences in the data available for applied ecology vis-à-vis applied ecotoxicology, which are field gradients and laboratory toxicity tests, respectively. With this study, we demonstrate that the current approach of chemical impact assessment, consisting of comparing measured concentrations to protective environmental quality standards for individual chemicals, is not optimal. In reply, and preparing for a method that would enable the comprehensive assessment and management of water quality pressures, we evaluate various quantitative chemical pollution pressure metrics for mixtures of chemicals in a case study with 24 priority substances of Europe-wide concern. We demonstrate why current methods are sub-optimal for water quality management prioritization and that chemical pollution currently imposes limitations to the ecological status of European surface waters. We discuss why management efforts may currently fail to restore a good ecological status, given that to date only 0.2% of the compounds in trade are considered in European water quality assessment and management.
Pressure effect on the order–disorder transformation in L10 FeNi
Authors: Tian Li-Yun , Eriksson Olle , Vitos Levente 
Published: September 2020

AbstractThe ordered phase of the FeNi system is known for its promising magnetic properties that make it a first-class rare-earth free permanent magnet. Mapping out the parameter space controlling the order–disorder transformation is an important step towards finding growth conditions that stabilize the $$L1_0$$

L

1
0

phase of FeNi. In this work, we study the magnetic properties and chemical order-disorder transformation in FeNi as a function of lattice expansion by utilizing ab initio alloy theory. The largest volume expansion considered here is 29% which corresponds to a pressure of $${-25}$$

-
25

GPa. The thermodynamic and magnetic calculations are formulated in terms of a long-range order parameter, which is subsequently used to find the ordering temperature as a function of pressure. We show that negative pressure promotes ordering, meaning that synthetic routes involving an increase of the volume of FeNi are expected to expand the stability field of the $$L1_0$$

L

1
0

phase.
Immune suppressed tumor microenvironment by exosomes derived from gastric cancer cells via modulating immune functions
Authors: Liu Juan , Wu Shaoxian , Zheng Xiao , Zheng Panpan , Fu Yuanyuan , Wu Changping , Lu Binfeng , Ju Jingfang , Jiang Jingting 
Published: September 2020

AbstractGastric cancer is one of the leading causes of cancer-related death due to late diagnosis with high metastatic frequency. In this study, the impact of tumor secreted exosomes on immune function in the tumor environment was investigated using exosomes isolated from gastric cancer cell lines MKN-28, MKN-45, and SGC-7901. Results show that exosomes derived from all of these cell lines changed the gene expression and cytokine secretion levels of CD8+ T cells. They also block cell cycle progression, induced apoptosis in CD8+ T cells. Image analysis of fluorescent labeled exosomes derived from three cell lines injected systemically into C57BL/6 mice revealed these exosomes primarily localize to the lungs. We further showed exosomes were mainly taken up by natural killer cells and macrophages in the lung. After long-term exposure to inject exosomes from MKN-45 cells, mice developed an immunosuppressive tumor microenvironment in the lung with increased frequency of effector memory CD4+ T and MDSC, decreased CD8+ T cell and NK frequency. This immune suppressive environment promotes gastric cancer lung metastasis. Lung metastasis sites developed after mice were exposed to exosomes isolated from all three gastric cancer cell lines when the mice were injected with MFC cells. Results suggest that exosomes derived from gastric cancer cells (especially MKN-45 and MKN-28) changed CD8+ T cell gene expression and cytokine secretion patterns to create an immunosuppressive condition for metastatic niche formation in the lung. Overall, this study provides new insights into how gastric cancer derived exosomes modulate the immune response to promote lung tumor metastasis.
A therapeutic oxygen carrier isolated from Arenicola marina decreased P. gingivalis induced inflammation and tissue destruction
Authors: Batool Fareeha , Stutz Céline , Petit Catherine , Benkirane-Jessel Nadia , Delpy Eric , Zal Franck , Leize-Zal Elisabeth , Huck Olivier 
Published: September 2020

AbstractThe control of inflammation and infection is crucial for periodontal wound healing and regeneration. M101, an oxygen carrier derived from Arenicola marina, was tested for its anti-inflammatory and anti-infectious potential based on its anti-oxidative and tissue oxygenation properties. In vitro, no cytotoxicity was observed in oral epithelial cells (EC) treated with M101. M101 (1 g/L) reduced significantly the gene expression of pro-inflammatory markers such as TNF-α, NF-κΒ and RANKL in P. gingivalis-LPS stimulated and P. gingivalis-infected EC. The proteome array revealed significant down-regulation of pro-inflammatory cytokines (IL-1β and IL-8) and chemokine ligands (RANTES and IP-10), and upregulation of pro-healing mediators (PDGF-BB, TGF-β1, IL-10, IL-2, IL-4, IL-11 and IL-15) and, extracellular and immune modulators (TIMP-2, M-CSF and ICAM-1). M101 significantly increased the gene expression of Resolvin-E1 receptor. Furthermore, M101 treatment reduced P. gingivalis biofilm growth over glass surface, observed with live/dead analysis and by decreased P. gingivalis 16 s rRNA expression (51.7%) (p < 0.05). In mice, M101 reduced the clinical abscess size (50.2%) in P. gingivalis-induced calvarial lesion concomitant with a decreased inflammatory score evaluated through histomorphometric analysis, thus, improving soft tissue and bone healing response. Therefore, M101 may be a novel therapeutic agent that could be beneficial in the management of P. gingivalis associated diseases.
The evolution of pueriparity maintains multiple paternity in a polymorphic viviparous salamander
Authors: Alarcón-Ríos Lucía , Nicieza Alfredo G. , Lourenço André , Velo-Antón Guillermo 
Published: September 2020

AbstractThe reduction in fecundity associated with the evolution of viviparity may have far-reaching implications for the ecology, demography, and evolution of populations. The evolution of a polygamous behaviour (e.g. polyandry) may counteract some of the effects underlying a lower fecundity, such as the reduction in genetic diversity. Comparing patterns of multiple paternity between reproductive modes allows us to understand how viviparity accounts for the trade-off between offspring quality and quantity. We analysed genetic patterns of paternity and offspring genetic diversity across 42 families from two modes of viviparity in a reproductive polymorphic species, Salamandra salamandra. This species shows an ancestral (larviparity: large clutches of free aquatic larvae), and a derived reproductive mode (pueriparity: smaller clutches of larger terrestrial juveniles). Our results confirm the existence of multiple paternity in pueriparous salamanders. Furthermore, we show the evolution of pueriparity maintains, and even increases, the occurrence of multiple paternity and the number of sires compared to larviparity, though we did not find a clear effect on genetic diversity. High incidence of multiple paternity in pueriparous populations might arise as a mechanism to avoid fertilization failures and to ensure reproductive success, and thus has important implications in highly isolated populations with small broods.
Brazilian Maternal and Child Nutrition Consortium: establishment, data harmonization and basic characteristics
Authors: Carrilho Thaís Rangel Bousquet , Farias Dayana Rodrigues , Batalha Mônica Araújo , Costa Nathalia Cristina Freitas , Rasmussen Kathleen M. , Reichenheim Michael E. , Ohuma Eric O. , Hutcheon Jennifer A. , Kac Gilberto ,   Brazilian Maternal and Child Nutrition Consortium, Oliveira Adauto Emmerich , Esteves-Pereira Ana Paula , Sato Ana Paula Sayuri , da Silva Antônio Augusto Moura , Costa Bárbara Miranda Ferreira , de Moraes Claudia Leite , Saunders Claudia , Parada Cristina Maria Garcia de Lima , Rocha Daniela da Silva , Gigante Denise Petrucci , dos Santos-Neto Edson Theodoro , Lacerda Elisa Maria de Aquino , Fujimori Elizabeth , Surita Fernanda Garanhani , Gomes-Filho Isaac Suzart , Bierhals Isabel Oliveira , Capelli Jane de Carlos Santana , Cecatti José Guilherme , Vaz Juliana dos Santos , Cesar Juraci Almeida , Mastroeni Marco Fábio , Carvalhaes Maria Antonieta de Barros Leite , da Silveira Mariângela Freitas , Domingues Marlos Rodrigues , Fernandes Mayra Pacheco , Drehmer Michele , Gonzalez Mylena Maciel , Padilha Patrícia de Carvalho , Junior Renato Passini , Souza Renato Teixeira , Alves Ronaldo Fernandes Santos , Batista Rosângela Fernandes Lucena , Mastroeni Silmara Salete de Barros Silva , Saldiva Silvia Regina Dias Medici , da Cruz Simone Seixas , Morais Sirlei Siani , Mengue Sotero Serrate 
Published: September 2020

AbstractPooled data analysis in the field of maternal and child nutrition rarely incorporates data from low- and middle-income countries and existing studies lack a description of the methods used to harmonize the data and to assess heterogeneity. We describe the creation of the Brazilian Maternal and Child Nutrition Consortium dataset, from multiple pooled longitudinal studies, having gestational weight gain (GWG) as an example. Investigators of the eligible studies published from 1990 to 2018 were invited to participate. We conducted consistency analysis, identified outliers, and assessed heterogeneity for GWG. Outliers identification considered the longitudinal nature of the data. Heterogeneity was performed adjusting multilevel models. We identified 68 studies and invited 59 for this initiative. Data from 29 studies were received, 21 were retained for analysis, resulting in a final sample of 17,344 women with 72,616 weight measurements. Fewer than 1% of all weight measurements were flagged as outliers. Women with pre-pregnancy obesity had lower values for GWG throughout pregnancy. GWG, birth length and weight were similar across the studies and remarkably similar to a Brazilian nationwide study. Pooled data analyses can increase the potential of addressing important questions regarding maternal and child health, especially in countries where research investment is limited.
Validation of a novel functional test for assessing metamorphopsia using epiretinal membranes as a model
Authors: Wang Henrietta , Khuu Sieu K. , Lam Sheila , Lin Clarissa , Kalloniatis Michael , Phu Jack 
Published: September 2020

AbstractCurrent tests for assessing metamorphopsia do not account for confounders such as perceptual filling-in and spatial redundancy, which affect its sensitivity and repeatability. This proof-of-concept study aimed to assess the performance of a novel laboratory-based psychophysical test (Line Sag Test, LST) which addresses these issues for quantification of metamorphopsia in idiopathic epiretinal membranes. The LST quantifies perpendicular metamorphopsia at three eccentricities (3°, 6°, and 9°) along eight meridians (45° steps). Metamorphopsia was assessed using the LST and Amsler grid and the hit rates of both tests for detecting metamorphopsia were compared. Normal metamorphopsia scores using the LST did not differ significantly from 0 and fell within one step-size (p = 0.500). The LST detected significantly more cases of metamorphopsia than the Amsler grid (14/21 versus 3/21) (p = 0.003). Similarly, significantly more cases of visual distortions in asymptomatic iERMs were detected using the LST than the Amsler grid (11/18 versus 0/18) (p = 0.008). The LST has a higher hit rate compared to the Amsler grid (67% versus 14%). This work demonstrates a psychophysically-robust functional test addressing perceptual confounders is more sensitive for quantifying and localising metamorphopsia in macular disease, particularly in asymptomatic disease.
Glomerular clusterin expression is increased in diabetic nephropathy and protects against oxidative stress-induced apoptosis in podocytes
Authors: He Junling , Dijkstra Kyra L. , Bakker Kim , Bus Pascal , Bruijn Jan A. , Scharpfenecker Marion , Baelde Hans J. 
Published: September 2020

AbstractClusterin, a glycoprotein encoded by the CLU gene, is expressed in many tissues, including the kidney, and clusterin expression is upregulated in the glomeruli of patients with various forms of kidney disease. Here, we investigated the role of clusterin in diabetic nephropathy (DN). In this study, we found that glomerular clusterin expression was increased in both patients with DN and streptozotocin-induced diabetic mice and that it co-localised with the podocyte marker WT1, indicating clusterin is expressed in podocytes. In our in vitro analysis, we found no significant change in CLU mRNA expression in podocytes following stimulation with high glucose and angiotensin II; in contrast, CLU mRNA expression was significantly upregulated following methylglyoxal stimulation. Methylglyoxal treatment also significantly decreased the mRNA expression of the slit diaphragm markers ZO-1 and NEPH1 and significantly increased the mRNA expression of the oxidative stress marker HO-1. Lastly, we showed that pre-incubating podocytes with recombinant human clusterin protein increased podocyte survival, prevented slit diaphragm damage, and reduced oxidative stress‒induced apoptosis following methylglyoxal stimulation. Taken together, our results indicate that glomerular clusterin is upregulated in DN, and this increase in clusterin expression may protect against oxidative stress-induced apoptosis in podocytes, providing a possible new therapeutic target for DN and other kidney diseases.
Demystifying the spectral collapse in two-photon Rabi model
Authors: Lo C. F. 
Published: September 2020

AbstractWe have investigated the eigenenergy spectrum of the two-photon Rabi model at the critical coupling, particularly the special feature “spectral collapse”, by means of an elementary quantum mechanics approach. The eigenenergy spectrum is found to consist of both a set of discrete energy levels and a continuous energy spectrum. Each of these eigenenergies has a two-fold degeneracy corresponding to the spin degree of freedom. The discrete eigenenergy spectrum has a one-to-one mapping with that of a particle in a “Lorentzian function” potential well, and the continuous energy spectrum can be derived from the scattering problem associated with a potential barrier. The number of bound states available at the critical coupling is determined by the energy difference between the two atomic levels so that the extent of the “spectral collapse” can be monitored in a straightforward manner.
The type VII secretion system protects Staphylococcus aureus against antimicrobial host fatty acids
Authors: Kengmo Tchoupa Arnaud , Watkins Kate E. , Jones Rebekah A. , Kuroki Agnès , Alam Mohammad Tauqeer , Perrier Sebastien , Chen Yin , Unnikrishnan Meera 
Published: September 2020

AbstractThe Staphylococcus aureus type VII secretion system (T7SS) exports several proteins that are pivotal for bacterial virulence. The mechanisms underlying T7SS-mediated staphylococcal survival during infection nevertheless remain unclear. Here we report that S. aureus lacking T7SS components are more susceptible to host-derived antimicrobial fatty acids. Unsaturated fatty acids such as linoleic acid (LA) elicited an increased inhibition of S. aureus mutants lacking T7SS effectors EsxC, EsxA and EsxB, or the membrane-bound ATPase EssC, compared to the wild-type (WT). T7SS mutants generated in different S. aureus strain backgrounds also displayed an increased sensitivity to LA. Analysis of bacterial membrane lipid profiles revealed that the esxC mutant was less able to incorporate LA into its membrane phospholipids. Although the ability to bind labelled LA did not differ between the WT and mutant strains, LA induced more cell membrane damage in the T7SS mutants compared to the WT. Furthermore, proteomic analyses of WT and mutant cell fractions revealed that, in addition to compromising membranes, T7SS defects induce oxidative stress and hamper their response to LA challenge. Thus, our findings indicate that T7SS contribute to maintaining S. aureus membrane integrity and homeostasis when bacteria encounter antimicrobial fatty acids.
A CRISPR-based method for testing the essentiality of a gene
Authors: You Yan , Ramachandra Sharmila G. , Jin Tian 
Published: September 2020

AbstractThe CRISPR/Cas9 system is a powerful method of editing genes by randomly introducing errors into the target sites. Here, we describe a CRISPR-based test for gene essentiality (CRISPR-E test) that allows the identification of essential genes. Specifically, we use sgRNA-mediated CRISPR/Cas9 to target the open reading frame of a gene in the genome and analyze the in-frame (3n) and frameshift (3n + 1 and 3n + 2) mutations in the targeted region of the gene in surviving cells. If the gene is non-essential, the cells would carry both in-frame (3n) and frameshift (3n + 1 and 3n + 2) mutations. In contrast, the cells would carry only in-frame (3n) mutations if the targeted gene is essential, and this selective elimination of frameshift (3n + 1 and 3n + 2) mutations of the gene indicate its essentiality. As a proof of concept, we have used this CRISPR-E test in the model organism Dictyostelium discoideum to demonstrate that Dync1li1 is an essential gene while KIF1A and fAR1 are not. We further propose a simple method for quantifying the essentiality of a gene using the CRISPR-E test.
Room temperature and high response ethanol sensor based on two dimensional hybrid nanostructures of WS2/GONRs
Authors: Ahmadvand Hassan , Iraji zad Azam , Mohammadpour Raheleh , Hosseini-Shokouh Seyed Hossein , Asadian Elham 
Published: September 2020

AbstractHere in this research, room temperature ethanol and humidity sensors were prepared based on two dimensional (2D) hybrid nanostructures of tungsten di-sulfide (WS2) nanosheets and graphene oxide nanoribbons (GONRs) as GOWS. The characterization results based on scanning electron microscopy (SEM), energy dispersive X-ray spectroscopy (ESD), Raman spectroscopy and X-ray diffraction (XRD) analysis confirmed the hybrid formations. Ethanol sensing of drop-casted GOWS films on SiO2 substrate indicated increasing in gas response up to 5 and 55 times higher compared to pristine GONRs and WS2 films respectively. The sensing performance of GOWS hybrid nanostructures was investigated in different concentrations of WS2, and the highest response was about 126.5 at 1 ppm of ethanol in 40% relative humidity (R.H.) for WS2/GONRs molar ratio of 10. Flexibility of GOWS was studied on Kapton substrate with bending radius of 1 cm, and the gas response decreased less than 10% after 30th bending cycles. The high response and flexibility of the sensors inspired that GOWS are promising materials for fabrication of wearable gas sensing devices.
Wavelength of light and photophobia in inherited retinal dystrophy
Authors: Otsuka Yuki , Oishi Akio , Miyata Manabu , Oishi Maho , Hasegawa Tomoko , Numa Shogo , Ikeda Hanako Ohashi , Tsujikawa Akitaka 
Published: September 2020

AbstractInherited retinal dystrophy (IRD) patients often experience photophobia. However, its mechanism has not been elucidated. This study aimed to investigate the main wavelength of light causing photophobia in IRD and difference among patients with different phenotypes. Forty-seven retinitis pigmentosa (RP) and 22 cone-rod dystrophy (CRD) patients were prospectively recruited. We designed two tinted glasses: short wavelength filtering (SWF) glasses and middle wavelength filtering (MWF) glasses. We classified photophobia into three types: (A) white out, (B) bright glare, and (C) ocular pain. Patients were asked to assign scores between one (not at all) and five (totally applicable) for each symptom with and without glasses. In patients with RP, photophobia was better relieved with SWF glasses {“white out” (p < 0.01) and “ocular pain” (p = 0.013)}. In CRD patients, there was no significant difference in the improvement wearing two glasses (p = 0.247–1.0). All RP patients who preferred MWF glasses had Bull’s eye maculopathy. Meanwhile, only 15% of patients who preferred SWF glasses had the finding (p < 0.001). Photophobia is primarily caused by short wavelength light in many patients with IRD. However, the wavelength responsible for photophobia vary depending on the disease and probably vary according to the pathological condition.