bluuebunny/crossref_metadata_2025_split huggingface dataset:
Chromatin loop anchors contain core structural components of the gene expression machinery in maize
Authors: Deschamps Stephane , Crow John A , Chaidir Nadia , Peterson-Burch Brooke , Kumar Sunil , Lin Haining , Zastrow-Hayes Gina , May Gregory D. 
Published: December 2020

Abstract
BackgroundThree-dimensional chromatin loop structures connect regulatory elements to their target genes in regions known as anchors. In complex plant genomes, such as maize, it has been proposed that loops span heterochromatic regions marked by higher repeat content, but little is known on their spatial organization and genome-wide occurrence in relation to transcriptional activity. ResultsHere, ultra-deep Hi-C sequencing of maize B73 leaf tissue was combined with gene expression and open chromatin sequencing for chromatin loop discovery and correlation with hierarchical topologically-associating domains (TADs) and transcriptional activity. A majority of all anchors are shared between multiple loops from previous public maize high-resolution interactome datasets, suggesting a highly dynamic environment, with a conserved set of anchors involved in multiple interaction networks. Chromatin loop interiors are marked by higher repeat contents than the anchors flanking them. A small fraction of high-resolution interaction anchors, fully embedded in larger chromatin loops, co-locate with active genes and putative protein-binding sites. Combinatorial analyses indicate that all anchors studied here co-locate with at least 81.5% of expressed genes and 74% of open chromatin regions. Approximately 38% of all Hi-C chromatin loops are fully embedded within hierarchical TAD-like domains, while the remaining ones share anchors with domain boundaries or with distinct domains. Those various loop types exhibit specific patterns of overlap for open chromatin regions and expressed genes, but no apparent pattern of gene expression. In addition, up to 63% of all unique variants derived from a prior public maize eQTL dataset overlap with Hi-C loop anchors. Anchor annotation suggests that <7% of all loops detected here are potentially devoid of any genes or regulatory elements. The overall organization of chromatin loop anchors in the maize genome suggest a loop modeling system hypothesized to resemble phase separation of repeat-rich regions. ConclusionsSets of conserved chromatin loop anchors mapping to hierarchical domains contains core structural components of the gene expression machinery in maize. The data presented here will be a useful reference to further investigate their function in regard to the formation of transcriptional complexes and the regulation of transcriptional activity in the maize genome.
Association between Colic and sleep problems in infancy and subsequent development, emotional and behavioral problems: A Longitudinal study
Authors: Valla Lisbeth , Småstuen Milada Cvancarova , Andenæs Randi , Misvær Nina , Olbjørn Christine , Helseth Sølvi 
Published: December 2020

Abstract
Background: Sleep and colic problems in infancy have been linked to adverse health outcome, but there is limited knowledge of the association between sleep and colic problems in infancy and subsequent development, emotional and behavior problems in young children. The aim of the present study was to examine whether there is an associations between infants’ crying and sleep problems at 6 months and behavioral and development problems at 18 months, 3 and 5 years Methods: This study is based on the Norwegian Mother, Father and Child Cohort Study (MoBa),conducted at the Norwegian Institute of Public Health from June 1999 to December 2008. A total of 86,724 children were included. Colic and sleep (sleep duration, nocturnal awakenings and easy to put to bed) was assessed by mother-reports. Z-scores were used to assess differences between groups of children (e.g. having colic or not, having a sleep problem or not). Emotional and behavioral problems were measured with items from the Child Behavior Checklist. Development problems were measured with items from The Ages and Stages Questionnaire. Results: Infants with colic scored significantly lower on development at 5 years (B=-0.10, CI [-0.14-; - 0.06]) and higher on internalizing problems both at 3years ( B=-0.15 .CI [0.11-; 0.18] ) and 5 years ( B=-0.17 .CI [0.12-; 0.21] ) than the reference population. Children who awoke frequently (≥ 3 times) and were more difficult to put to bed at 6 months scored significantly lower on development at 18 months and 3 and 5 years, and higher on internalizing behavior problems at 3 and 5 years (B=0.18 and B=0.16).Children with shorter sleep duration (≤ 10 hours) at 6 months had more internalizing behavior problems at 3 years (B=-0.14. CI [0.07; - 0.02]) and 5 years (B=-0.15 .CI [0.05-; - 0.25]) than the reference population.Conclusions: Colic and disruptive sleep early in life are risk factors for development, emotional and behavioral problems within the first five years of a child’s life. It is important to be aware that disruptive sleep and colic in infancy may have long-term negative consequences.
Genome-wide identification, characterization, and expression analysis of tea plant autophagy-related genes (CsARGs) demonstrates that they play diverse roles during development and under abiotic stress
Authors: Wang Huan , Ding ZhaoTang , Gou Mengjie , Hu Jianhui , Wang Yu , Wang Lu , Wang Yuchun , Di Taimei , Zhang Xinfu , Hao Xinyuan , Wang Xinchao , Yang Yajun , Qian Wenjun 
Published: December 2020

Abstract
Background: Autophagy, meaning ‘self-eating’, is required for the degradation and recycling of cytoplasmic constituents under stressful and non-stressful conditions, which helps to maintain cellular homeostasis and delay aging and longevity in eukaryotes. To date, the functions of autophagy have been heavily studied in yeast, mammals and model plants, but few studies have focused on economically important crops, especially tea plants (Camellia sinensis). The roles played by autophagy in coping with various environmental stimuli have not been fully elucidated to date. Therefore, investigating the functions of autophagy-related genes in tea plants may help to elucidate the mechanism governing autophagy in response to stresses in woody plants.Results: In this study, we identified 35 C. sinensis autophagy-related genes (CsARGs). Each CsARG is highly conserved with its homologues from other plant species, except for CsATG14. Tissue-specific expression analysis demonstrated that the abundances of CsARGs varied across different tissues, but CsATG8c/i showed a degree of tissue specificity. Under hormone and abiotic stress conditions, most CsARGs were upregulated at different time points during the treatment. In addition, the expression levels of 10 CsARGs were higher in the cold-resistant cultivar ‘Longjing43’ than in the cold-susceptible cultivar ‘Damianbai’ during the CA period; however, the expression of CsATG101 showed the opposite tendency.Conclusions: We performed a comprehensive bioinformatic and physiological analysis of CsARGs in tea plants, and these results may help to establish a foundation for further research investigating the molecular mechanisms governing autophagy in tea plant growth, development and response to stress. Meanwhile, some CsARGs could serve as putative molecular markers for the breeding of cold-resistant tea plants in future research.
A retrospective observational study of anesthesia management during the flexible or rigid bronchoscopy in patients with central airway obstruction: Safety application of muscle relaxants and the traditional Low-frequency ventilation
Authors: Li Jing-Jin , Li Nan , Ma Wei-Jia , Bao Ming-Xue , Chen Zi-Yang , Ding Zheng-Nian 
Published: December 2020

Abstract
Background: Bronchoscopy treatments of central airway obstruction (CAO) under general anesthesia are high-risky procedures, and posing a giant challenge to the anesthesiologists. We summarized and analyzed our clinical experience in anesthesia management in patients with CAO undergoing flexible or rigid bronchoscopy, including the use of muscle relaxants , the traditional Low-frequency ventilation.Methods: Clinical data of 375 patients with CAO who underwent urgent endoscopic treatments in general anesthesia from January 2016 to October 2019 were retrospectively reviewed. The use ratio of skeletal muscle relaxants, dose of skeletal muscle relaxants used, the incidence of perioperative adverse events, adequacy of ventilation and gas exchange, post-operative recovery between rigid bronchoscopy and flexible bronchoscopy therapy, and risk factors for postoperative ICU admission were evaluated.Results: There was a high usage rate (96.5%) of skeletal muscle relaxants in patients with CAO who underwent either flexible bronchoscopy or rigid bronchoscopy therapy and a higher dosage of skeletal muscle relaxants used in rigid bronchoscopy compared with flexible bronchoscopy therapy. This procedure had a low incidence of perioperative adverse events, with no significant difference between flexible and rigid bronchoscopy therapy. Sufficient ventilation was successfully established using the traditional Low-frequency ventilation both in flexible and rigid bronchoscopy group. There was a low mortality (0.8%) during the post-operative recovery, and the higher grade of American Society of Anesthesiologists (ASA) and obvious dyspnea or orthopnea were the independent risk factors for postoperative ICU admission.Conclusion: The muscle relaxants and low-frequency traditional ventilation can be safely used both in flexible and rigid bronchoscopy treatments in patients with CAO These results may provide strong clinical evidence for optimizing the anesthesia management of bronchoscopy for such patients.
The transverse diameter of right common femoral vein by ultrasound in the supine position for predicting post-spinal hypotension during cesarean delivery.
Authors: Yao Shi-Fa , Zhao Yan-Hong , Zheng Jing , Qian Jie-Yan , Zhang Chen , Xu Zifeng , Xu Tao 
Published: December 2020

Abstract
Background: Post-spinal anesthesia hypotension during cesarean delivery is caused by decreased systemic vascular resistance due to the blockage of autonomic nerves, which is further worsened by inferior vena cava (IVC) compression by the gravid uterus. The aim of this study was to assess whether peak velocity and diameter of IVC below the xiphoid or the right common femoral vein (RCFV) in the inguinal region, as measured on ultrasound, could reflect the degree of IVC compression and further identify parturients at risk of post-spinal hypotension.Methods: After 56 parturients underwent elective cesarean section with spinal anesthesia were included in this study, peak velocities and anteroposterior diameters of the IVC and peak velocities and transverse diameters of the RCFV were measured by ultrasound before anesthesia. The primary outcome was ultrasound measurements of IVC and RCFV, and their association with post-spinal hypotension during cesarean delivery. Hypotension was defined as having a drop of systolic arterial pressure >20% from the baseline. Multinomial logistic regression analysis was used to identify the association between the measurements of IVC, RCFV and post-spinal hypotension during cesarean delivery. Receiver operating characteristic curves were used to test the abilities of the identified parameters to predict post-spinal hypotension, and the areas under the curve and the optimum cut-off values for the predictive parameters were calculated.Results: Longer transverse diameter of the RCFV was associated with the occurrence of post-spinal hypotension (odds ratio = 2.022, 95% confidence interval [CI] 1.261–3.243). The area under the receiver operating characteristics curve for the prediction of post-spinal hypotension was 0.759 (0.628–0.890; P = 0.001). A transverse diameter of the RCFV >12.2 mm could predict post-spinal hypotension during cesarean delivery.Conclusions: We demonstrated a longer transverse diameter of RCFV was associated with hypotension and it could predict parturients at major risk of hypotension before anesthesia.Trial Registration: This study was registered at http://www.chictr.org.cn on 16, May, 2018. No. ChiCTR1800016163
Effects of a Randomized Controlled Trial of a Brief, Student-Nurse Led, Parent-Based Sexual Health Intervention on Parental Protective Factors and HPV Vaccination Uptake
Authors: Maria Diane Santa , Markham Christine , Sanghamitra Misra M. , Coleman Deidra C. , Lyons Mandi , Desormeaux Christina , Cron Stanley , Guilamo-Ramos Vincent 
Published: December 2020

Abstract
Background: Parents play a pivotal role in adolescent sexual health and Human Papillomavirus (HPV) vaccination. Nurses are on the frontlines of healthcare and play a critical role in promoting HPV vaccination and parent-child sexual health communication. We enhanced the Families Talking Together (FTT) parent-based sexual health curriculum to include adolescent vaccinations herein, FTT+HPV, and trained student nurses to provide a strong HPV vaccination and parent-child sexual health communication endorsement. Methods: Using a randomized attention-controlled trial design, we examined the efficacy of FTT+HPV among 519 parents and their 11-14 year old youth recruited from medically underserved communities between 2015 and 2018. Participants were recruited from 22 after-school programs (e.g., Boys and Girls Clubs) and 19 charter schools. For parents, we examined protective factors including parent-child sexual health communication and parental involvement. For youth, we examined sexual health knowledge, parent-child sexual health communication, and parent-child connectedness. To assess HPV vaccination initiation and completion, we searched IMMTRAC immunization registry records for 85% of youth and used parental report for youth without registry records. Group differences were calculated using the estimated mean difference at one- and six months post-intervention with significance set at the p< 0.05 level. Results: Baseline rates of HPV vaccination were low at 55.7%. No significant difference between the groups was seen in vaccination initiation or completion rates by one-month post-intervention. However, by six-months post intervention, there was a significant difference between the groups with 70.3% of the intervention group initiating the HPV vaccination series vs. 60.6% for the control group (p = 0.02). No difference between the groups was found for HPV series completion at six-months. There were significant differences in condom knowledge (p = 0.04), parent-child connectedness (p = 0.04), and communication frequency (p = 0.001) with greater improvement in the intervention vs. the control group. Rates of sexual activity remained low in both groups throughout the six-month follow-up period. Conclusion: A brief parent-based adolescent sexual health and HPV vaccination intervention delivered by student nurses can improve sexual health outcomes including protective parental factors, adolescent sexual health knowledge, and HPV vaccination initiation rates.
Parathyroid carcinoma with sarcomatoid differentiation: A case report and literature review
Authors: Hu Liang , Xie Xiaojun 
Published: December 2020

Abstract
BackgroundParathyroid carcinoma (PC) is a rare thyroid tumor. PC with sarcomatoid differentiation(PCSD) is even rarer and its exact etiology remains unclear. We here report a case of PCSD, and present the clinicopathological features and pathological diagnosis and review the literature.Case presentationA 71-year-old man presented with a mass of 4.5 cm × 3.5 cm in the right neck. The tumor was composed of nest-like transparent cells, and the septum had heterotypic rhabdoid cells with sarcomatoid differentiation. Immunophenotype was as follows: myogenic differentiation 1(MyoD1), myogenin and desmin were positive; clear cells were positive for chromogranin A(CGA), synaptophysin(Syn) and GATA-3; and Ki-67 proliferation index was 40%. Hematoxylin and eosin staining and immunohistochemistry were performed. The patient was diagnosed with PCSD, and died 6 months after surgery.ConclusionsPCSD is a rare type of primary parathyroid tumor with high malignancy and poor prognosis. Definitive diagnosis should be based on histopathological morphology and immunophenotype, and surgical treatment should be performed as soon as possible.
Perceptions, emotional reactions and needs of adolescent psychiatric inpatients during the COVID-19 pandemic: A qualitative analysis of in-depth interviews
Authors: Giannakopoulos George , Mylona Savvina , Zisimopoulou Anastasia , Belivanaki Maria , Charitaki Stella , Kolaitis Gerasimos 
Published: December 2020

Abstract
Background: The new coronavirus pandemic (COVID-19) has been accompanied by severe psychological pressure on the entire population. However, little is known about how this pandemic could affect the more vulnerable population with severe mental illness.Aims: To explore adolescent psychiatric inpatients' perceptions, emotional reactions and needs during the first wave of the COVID-19 pandemic.Methods: Individual in-depth interviews were conducted with nine psychiatric inpatients aged 12-17 years. Through open-ended questions, interviewers initiated five themes: (1) knowledge about the coronavirus pandemic, (2) changes in everyday routine, (3) pandemic-related emotions, (4) helpful thoughts and attitudes and (5) practices for helping adolescents deal with the hardships brought about by the pandemic. A thematic analysis was conducted using line-by-line open coding.Results: With regard to their knowledge of the impact of the current pandemic, almost all adolescents focused on information about the nature of coronavirus and also on existing crisis management practices. Almost all patients identified predominantly negative changes due to the quarantine state, including restrictions on both social life and personal freedom as well as excessive contact with family members during home isolation. As far as their emotions was concerned, adolescents did acknowledge anxiety about self-harm and harming their loved ones as well as mood swings within the family nucleus; anxiety was also manifested about the unknown and the management of the pandemic in other countries. Avoidance of thought rumination about the coronavirus and its consequences, positive thinking and looking towards the future were reported as constructive strategies for coping with challenging emotions. Additionally, a sense of belongingness (provided that they are not alone and share a common experience) seems to have been playing a pivotal role in the adolescents coping strategies. Trust in the authorities and the community was another quite noteworthy point that emerged during the interviews. Lastly, our findings indicated adolescents' benefit from receiving balanced health messaging coupled with balanced thinking within both their social and family environment.Conclusions: Enhanced comprehension of possible mediating psychological pathways is needed to help clinicians, researchers and decision-makers to avert the deterioration of mental disorders and overall functioning, as well as additional stress-related disorders.
Mixing of cogenetic magmas in the Cretaceous Zhangzhou calc-alkaline granite from southeast China recorded by in-situ apatite geochemistry
Authors: Zhang Xiaobing , Guo Feng , Zhang Bo , Zhao Liang , Wang Guoqing 
Published: December 2020

AbstractMixing of cogenetic magmas represents an important process in granite petrogenesis but is difficult to identify and is consequently often overlooked due to the absence of obvious isotopic distinctions between the mixed melts. We have conducted in situ elemental and O isotope analyses on apatite from Cretaceous Zhangzhou calc-alkaline granite in southeast China. We integrated these data with micro-analyses on other minerals (plagioclase, zircon, and titanite) as well as whole-rock geochemistry to decipher the mixing history of this granitic complex. The apatite occurs as an early crystallizing phase forming inclusions in biotite, plagioclase, and titanite, and is characterized by core-rim zonation textures with a dark core and bright rims in backscattered images. The core domains have remarkably higher SO3 and Li concentrations but much lower SiO2, REE, and Y concentrations than the rim domains. However, both the cores and rims show geochemical compositions similar to that from typical I-type granite and also have mantle-like O isotope compositions (the core has δ18O = 5.3–6.8‰ and the rim has δ18O = 5.2–6.4‰, respectively), indicating crystallization from granitic melts derived from newly accreted crust. The combined major and trace element and O isotope compositions of apatite and whole-rock geochemistry suggest that compositional evolution of the Zhangzhou granite involved mixing between two cogenetic magma batches, with variable degrees of subsequent differentiation. Batch I magma was a low-SiO2 and high-SO3 melt, whereas Batch II magma was a high-SiO2 and low-SO3 melt that experienced devolatilization. The high-S content in apatite cores further suggests the parental magma of the Zhangzhou granite likely originated from a sulfur-rich source comprising mainly newly accreted arc crust in response to subduction of the paleo-Pacific Ocean. The geochemical records of these magmatic processes are rarely observed in coeval zircon, titanite, and plagioclase. Our study, therefore, demonstrates that apatite geochemistry is potentially a more suitable monitor of complex magmatic evolution, including devolatilization and mixing of isotopically indistinguishable magmas.
Evaluation of China's water-resource utilization efficiency based on a DEA-Tobit two-stage model
Authors: Yang Y. 
Published: December 2020

Abstract
In this paper, a Data Envelopment Analysis-Tobit (DEA-Tobit) two-stage model was used to evaluate the efficiency of water-resource utilization, and the regional differences and influencing factors on water-resource utilization were analyzed. The results of the analysis of regional differences show that China's water-use efficiency is relatively low. Only Beijing, Shanghai, and Fujian have water-use efficiency higher than 0.8, whereas most other provinces and cities have an efficiency of 0.3–0.8. The eastern region demonstrates a higher water-resource utilization efficiency than the central and western regions. The analysis of the influencing factors of regional differences in water-use efficiency found that per capita water resources, per capita domestic water use, and the proportion of primary and secondary industries all have a negative impact on the efficiency of water use, and per capita GDP has a positive impact on the efficiency of water use. Agricultural water consumption, industrial water consumption, domestic water consumption, and total ecological water consumption all have a negative impact on water-resource utilization efficiency, of which domestic water consumption and industrial water consumption have a greater impact. Technological level and water-resource utilization efficiency show a significant positive correlation.
Regulative Action of Birds Upon Insect Oscillations
Authors: Forbes Stephen A. 
Published: December 2020

Reports on gut contents of birds taken from an apple orchard severely infested with cankerworm in Tazewell County, Illinois in two sampling periods (May 1881 and May 1882). In 1881, fifty-four birds representing twenty-four species were taken, with seven other species noted present. In 1882, ninety-two birds representing thirty-one species were taken, with four other species noted present. Insect development was more advanced at the time of the 1881 sample than the 1882 sample. For common species in the sample, the author compares findings from the orchard to samples of the same species of birds taken from other “ordinary” locations.