bluuebunny/crossref_metadata_2025_split huggingface dataset:
Causal effects of population dynamics and environmental changes on spatial variability of marine fishes
Authors: Wang Jheng-Yu , Kuo Ting-Chun , Hsieh Chih-hao 
Published: May 2020

AbstractPopulations with homogeneous distributions have better bet-hedging capacity than more heterogeneously distributed populations. Both population dynamics and environmental factors may influence the spatial variability of a population, but clear empirical evidence of such causal linkages is sparse. Using 25-year fish survey data from the North Sea, we quantify causal effects of age structure, abundance, and environment on nine fish species. We use empirical dynamic modeling—an approach based on state-space reconstruction rather than correlation—to demonstrate causal effects of those factors on population spatial variability. The causal effects are detected in most study species, though direction and strength vary. Specifically, truncated age structure elevates population spatial variability. Warming and spatially heterogeneous temperatures may enhance population spatial variability, whereas abundance and large-scale environmental effects are inconclusive. Fishing may affect population spatial variability directly or indirectly by altering age structure or abundance. We infer potential harmful effects of fishing and environmental changes on fish population stability, highlighting the importance of considering spatial dynamics in fisheries management.
Enabling safe aqueous lithium ion open batteries by suppressing oxygen reduction reaction
Authors: Chen Long , Cao Longsheng , Ji Xiao , Hou Singyuk , Li Qin , Chen Ji , Yang Chongyin , Eidson Nico , Wang Chunsheng 
Published: May 2020

AbstractDue to the non-flammable nature of water-based electrolytes, aqueous lithium-ion batteries are resistant to catching fire. However, they are not immune to the risk of explosion, since the sealing structure adopted by current batteries limits the dissipation of heat and pressure within the cells. Here, we report a safe aqueous lithium-ion battery with an open configuration using water-in-salt electrolytes and aluminum oxide coated anodes. The design can inhibit the self-discharge by substantially suppressing the oxygen reduction reaction on lithiated anodes and enable good cycle performance over 1000 times. Our study may open a pathway towards safer lithium-ion battery designs.
Soil fungal networks maintain local dominance of ectomycorrhizal trees
Authors: Liang Minxia , Johnson David , Burslem David F. R. P. , Yu Shixiao , Fang Miao , Taylor Joe D. , Taylor Andy F. S. , Helgason Thorunn , Liu Xubing 
Published: May 2020

AbstractThe mechanisms regulating community composition and local dominance of trees in species-rich forests are poorly resolved, but the importance of interactions with soil microbes is increasingly acknowledged. Here, we show that tree seedlings that interact via root-associated fungal hyphae with soils beneath neighbouring adult trees grow faster and have greater survival than seedlings that are isolated from external fungal mycelia, but these effects are observed for species possessing ectomycorrhizas (ECM) and not arbuscular mycorrhizal (AM) fungi. Moreover, survival of naturally-regenerating AM seedlings over ten years is negatively related to the density of surrounding conspecific plants, while survival of ECM tree seedlings displays positive density dependence over this interval, and AM seedling roots contain greater abundance of pathogenic fungi than roots of ECM seedlings. Our findings show that neighbourhood interactions mediated by beneficial and pathogenic soil fungi regulate plant demography and community structure in hyperdiverse forests.
Temperatures, diagnostics and treatment in pediatric cancer patients with fever in neutropenia, NCT01683370
Authors: Brack Eva , Wagner Stéphanie , Stutz-Grunder Eveline , Agyeman Philipp K. A. , Ammann Roland A. 
Published: May 2020

AbstractIn pediatric oncology, there is no evidence-based definition of the temperature limit defining fever (TLDF), which itself is essential for the definition of fever in chemotherapy-induced severe neutropenia (FN). Lowering the TLDF can increase the number of FN episodes diagnosed. This prospective, single center observational study collected data on all temperature measurements, complete blood counts (CBCs), and measures of diagnostics and therapy performed at and after FN diagnosis in pediatric oncology patients using a high standard TLDF (39 °C ear temperature). In 45 FN episodes in 20 patients, 3391 temperature measurements and 318 CBCs, plus information on antibiotics, anti-fungal therapy, antipyretics, blood cultures taken and on discharge were collected. These data can mainly be used to study the influence of virtually lowering the TLDF on diagnostic measures, treatment and length of hospitalization in pediatric FN, which in turn are directly related to costs of FN therapy, and quality of life. This approach can be expanded to include as well different definitions of neutropenia.
Multi-beam two-photon polymerization for fast large area 3D periodic structure fabrication for bioapplications
Authors: Maibohm Christian , Silvestre Oscar F. , Borme Jérôme , Sinou Maina , Heggarty Kevin , Nieder Jana B. 
Published: May 2020

AbstractTwo-photon polymerization (TPP) is capable of fabricating 3D structures with dimensions from sub-µm to a few hundred µm. As a direct laser writing (DLW) process, fabrication time of 3D TPP structures scale with the third order, limiting its use in large volume fabrication. Here, we report on a scalable fabrication method that cuts fabrication time to a fraction. A parallelized 9 multi-beamlets DLW process, created by a fixed diffraction optical element (DOE) and subsequent stitching are used to fabricate large periodic high aspect ratio 3D microstructured arrays with sub-micron features spanning several hundred of µm2. The wall structure in the array is designed with a minimum of traced lines and is created by a low numerical aperture (NA) microscope objective, leading to self-supporting lines omitting the need for line-hatching. The fabricated periodic arrays are applied in a cell – 3D microstructure interaction study using living HeLa cells. First indications of increased cell proliferation in the presence of 3D microstructures compared to planar surfaces are obtained. Furthermore, the cells adopt an elongated morphology when attached to the 3D microstructured surfaces. Both results constitute promising findings rendering the 3D microstructures a suited tool for cell interaction experiments, e.g. for cell migration, separation or even tissue engineering studies.
Beyond Forcing Scenarios: Predicting Climate Change through Response Operators in a Coupled General Circulation Model
Authors: Lembo Valerio , Lucarini Valerio , Ragone Francesco 
Published: May 2020

AbstractGlobal Climate Models are key tools for predicting the future response of the climate system to a variety of natural and anthropogenic forcings. Here we show how to use statistical mechanics to construct operators able to flexibly predict climate change. We perform our study using a fully coupled model - MPI-ESM v.1.2 - and for the first time we prove the effectiveness of response theory in predicting future climate response to CO2 increase on a vast range of temporal scales, from inter-annual to centennial, and for very diverse climatic variables. We investigate within a unified perspective the transient climate response and the equilibrium climate sensitivity, and assess the role of fast and slow processes. The prediction of the ocean heat uptake highlights the very slow relaxation to a newly established steady state. The change in the Atlantic Meridional Overturning Circulation (AMOC) and of the Antarctic Circumpolar Current (ACC) is accurately predicted. The AMOC strength is initially reduced and then undergoes a slow and partial recovery. The ACC strength initially increases due to changes in the wind stress, then undergoes a slowdown, followed by a recovery leading to a overshoot with respect to the initial value. Finally, we are able to predict accurately the temperature change in the North Atlantic.
Monti Sabatini and Colli Albani: the dormant twin volcanoes at the gates of Rome
Authors: Marra F. , Castellano C. , Cucci L. , Florindo F. , Gaeta M. , Jicha B. R. , Palladino D. M. , Sottili G. , Tertulliani A. , Tolomei C. 
Published: May 2020

AbstractThis multi-disciplinary work provides an updated assessment of possible future eruptive scenarios for the city of Rome. Seven new 40Ar/39Ar ages from selected products of the Monti Sabatini and Vulsini volcanic districts, along with a compilation of all the literature ages on the Colli Albani and Vico products, are used to reconstruct and compare the eruptive histories of the Monti Sabatini and Colli Albani over the last 900 ka, in order to define their present state of activity. Petrographic analyses of the dated units characterize the crystal cargo, and Advanced-InSAR analysis highlights active deformation in the MS. We also review the historical and instrumental seismicity affecting this region. Based on the chronology of the most recent phases and the time elapsed between the last eruptions, we conclude that the waning/extinguishment of eruptive activity shifted progressively from NW to SE, from northern Latium toward the Neapolitan area, crossing the city of Rome. Although Monti Sabatini is unaffected by the unrest indicators presently occurring at the Colli Albani, it should be regarded as a dormant volcanic district, as the time of 70 kyr elapsed since the last eruption is of the same order of the longest dormancies occurred in the past.
A deep learning approach for designed diffraction-based acoustic patterning in microchannels
Authors: Raymond Samuel J. , Collins David J. , O’Rorke Richard , Tayebi Mahnoush , Ai Ye , Williams John 
Published: May 2020

AbstractAcoustic waves can be used to accurately position cells and particles and are appropriate for this activity owing to their biocompatibility and ability to generate microscale force gradients. Such fields, however, typically take the form of only periodic one or two-dimensional grids, limiting the scope of patterning activities that can be performed. Recent work has demonstrated that the interaction between microfluidic channel walls and travelling surface acoustic waves can generate spatially variable acoustic fields, opening the possibility that the channel geometry can be used to control the pressure field that develops. In this work we utilize this approach to create novel acoustic fields. Designing the channel that results in a desired acoustic field, however, is a non-trivial task. To rapidly generate designed acoustic fields from microchannel elements we utilize a deep learning approach based on a deep neural network (DNN) that is trained on images of pre-solved acoustic fields. We use then this trained DNN to create novel microchannel architectures for designed microparticle patterning.
Instrumentation for quantitative analysis of volatile compounds emission at elevated temperatures. Part 2: Analysis of carbon fibre reinforced epoxy composite
Authors: Lourenço Célia , Francis Daniel , Fowler Dawn P. , Staines Stephen E. , Hodgkinson Jane , Walton Christopher , Bergin Sarah , Tatam Ralph P. 
Published: May 2020

AbstractWe have investigated the release of gases and volatile organic compounds (VOCs) from a carbon fibre reinforced epoxy composite matrix used in aircraft structural components. Analysis was performed at several temperatures both up to and above the recommended operating temperature (121 °C) for the material, to a maximum of 250 °C. Gas chromatography-mass spectrometry (GC-MS) combined with thermal desorption (TD-GC-MS) was used to identify and quantify VOCs, and in parallel real-time gas detection with commercial off-the-shelf (COTS) gas sensors. Under hydrocarbon free air, CO, SO2, NO, NO2and VOCs (mainly aldehydes, ketones and a carboxylic acid) were detected as the gaseous products released during the thermal exposure of the material up to 250 °C, accompanied by increased relative humidity (4%). At temperatures up to 150 °C, gas and volatile emission was limited.
Snow depths’ impact on soil microbial activities and carbon dioxide fluxes from a temperate wetland in Northeast China
Authors: Wang Xue , Bai Xueyuan , Ma Liang , He Chunguang , Jiang Haibo , Sheng Lianxi , Luo Wenbo 
Published: May 2020

AbstractSnow depth may have a complex influence on carbon cycling in winter. Here we set up a field experiment to investigate how different snow depths (0 cm, 60 cm, 90 cm) influenced carbon dioxide (CO2) in a wetland. The mean ± standard error of CO2 emissions under snow addition treatments (60 cm and 90 cm snow depths) were 0.92 ± 0.16 g·cm−2·s−1 and 0.53 ± 0.16 g·cm−2·s−1, respectively, compared with snow removal treatment (0 cm snow depth), 0.11 ± 0.05 g·cm−2·s−1. In general, snow addition increased CO2 fluxes significantly. As snow depths increased, microbial biomass carbon (MBC) and bacterial diversities increased drastically. More important, the community of bacteria differed under different treatments. Firmicutes, which can resist dehydration and extremely low temperatures, was widely distributed in the snow removal treatment, where it sustained soil biochemical processes. Overall, our study indicates that snow cover counteracts the negative effects on soil microbial activities caused by low temperatures and could play a critical role in winter carbon cycling in wetlands.
Ionisation processes and laser induced periodic surface structures in dielectrics with mid-infrared femtosecond laser pulses
Authors: Tsibidis George D. , Stratakis Emmanuel 
Published: May 2020

AbstractIrradiation of solids with ultrashort pulses and laser processing in the mid-Infrared (mid-IR) spectral region is a yet predominantly unexplored field with a large potential for a wide range of applications. In this work, laser driven physical phenomena associated with processes following irradiation of fused silica (SiO2) with ultrashort laser pulses in the mid-IR region are investigated in detail. A multiscale modelling approach is performed that correlates conditions for formation of perpendicular or parallel to the laser polarisation low spatial frequency periodic surface structures for low and high intensity mid-IR pulses (not previously explored in dielectrics at those wavelengths), respectively. Results demonstrate a remarkable domination of tunneling effects in the photoionisation rate and a strong influence of impact ionisation for long laser wavelengths. The methodology presented in this work is aimed to shed light on the fundamental mechanisms in a previously unexplored spectral area and allow a systematic novel surface engineering with strong mid-IR fields for advanced industrial laser applications.
Cultural familiarity and musical expertise impact the pleasantness of consonance/dissonance but not its perceived tension
Authors: Lahdelma Imre , Eerola Tuomas 
Published: May 2020

AbstractThe contrast between consonance and dissonance is vital in making music emotionally meaningful. Consonance typically denotes perceived agreeableness and stability, while dissonance disagreeableness and a need of resolution. This study addresses the perception of consonance/dissonance in single intervals and chords with two empirical experiments conducted online. Experiment 1 explored the perception of a representative sample of intervals and chords to investigate the overlap between the seven most used concepts (Consonance, Smoothness, Purity, Harmoniousness, Tension, Pleasantness, Preference) denoting consonance/dissonance in all the available (60) empirical studies published since 1883. The results show that the concepts exhibit high correlations, albeit these are somewhat lower for non-musicians compared to musicians. In Experiment 2 the stimuli’s cultural familiarity was divided into three levels, and the correlations between the key concepts of Consonance, Tension, Harmoniousness, Pleasantness, and Preference were further examined. Cultural familiarity affected the correlations drastically across both musicians and non-musicians, but in different ways. Tension maintained relatively high correlations with Consonance across musical expertise and cultural familiarity levels, making it a useful concept for studies addressing both musicians and non-musicians. On the basis of the results a control for cultural familiarity and musical expertise is recommended for all studies investigating consonance/dissonance perception.
Features of soil behavior in the near-fault zones during the 2011 Tohoku mega-thrust earthquake Mw 9
Authors: Pavlenko Olga V. 
Published: May 2020

AbstractSoil behavior is studied during the Tohoku earthquake, where abnormally high accelerations > 1 g were recorded. Based on vertical array records, models of soil behavior are constructed at 28 sites in northern Honshu (Tohoku region). They are compared with previously studied models of soil behavior in southern Tohoku and Kanto regions, where shock waves were identified as possible causes of the recorded high accelerations. Shear moduli did not reduce during strong motion at many sites, and the behavior of softer and denser soils was similar to a large extent. The nonlinearity of soil response during the Tohoku earthquake was weaker than that observed earlier during the 1995 Kobe and 2000 Tottori earthquakes (Mw ~6.7–6.8). Instead, a widespread soil hardening was found, most expressed at stations recorded the highest PGAs. To explain the observed features of soil behavior, two possible mechanisms are suggested, such as, 1) shock wave fronts generated by rupture propagation along the fault plane induce soil hardening and high PGAs; 2) soil compaction and hardening is a soil response to long-lasting dynamic loadings during the earthquake. Most likely we may expect similar effects of soil hardening and generation of high PGAs during other mega-thrust earthquakes in future.
Complete genome sequence of a methicillin-resistant Staphylococcus lugdunensis strain and characteristics of its staphylococcal cassette chromosome mec
Authors: Shibuya Rie , Uehara Yuki , Baba Tadashi , Teruya Kuniko , Satou Kazuhito , Hirano Takashi , Kirikae Teruo , Hiramatsu Keiichi 
Published: May 2020

AbstractSymptoms of Staphylococcus lugdunensis infection are often similar to those of Staphylococcus aureus infection, including skin and soft-tissue lesions, bacteremia and infective endocarditis. Despite the severity of these infections, S. lugdunensis is regarded as a less important pathogen than drug-resistant S. aureus. To investigate its ability to cause infectious diseases, a methicillin-resistant S. lugdunensis (MRSL) strain JICS135 was isolated from a patient with bacteremia and subjected to whole genome sequencing. Similar to most strains of methicillin-resistant S. aureus (MRSA), this MRSL strain possessed the staphylococcal cassette chromosome mec (SCCmec) located close to the origin of replication. However, the SCCmec in this MRSL strain, with three ccr complexes, was structurally unique and currently untypable. Moreover, the SCCmec of this MRSL strain was found to carry two genes encoding microbial surface components recognizing adhesive matrix molecules (MSCRAMM)-like proteins accompanied by glycosyl transferases, one of which may have been derived from S. aureus and the other from S. epidermidis, indicating that this MRSL evolved to carry virulence factors from other staphylococci. The emergence of this strain, the first MRSL strain whose genome has been sequenced completely, may be of public concern.
Loss of the conserved PKA sites of SIK1 and SIK2 increases sleep need
Authors: Park Minjeong , Miyoshi Chika , Fujiyama Tomoyuki , Kakizaki Miyo , Ikkyu Aya , Honda Takato , Choi Jinhwan , Asano Fuyuki , Mizuno Seiya , Takahashi Satoru , Yanagisawa Masashi , Funato Hiromasa 
Published: May 2020

AbstractAlthough sleep is one of the most conserved behaviors, the intracellular mechanism regulating sleep/wakefulness remains unknown. We recently identified a protein kinase, SIK3, as a sleep-regulating molecule. Mice that lack a well-conserved protein kinase A (PKA) phosphorylation site, S551, showed longer non-rapid eye movement (NREM) sleep and increased NREMS delta density. S551 of SIK3 is conserved in other members of the SIK family, such as SIK1 (S577) and SIK2 (S587). Here, we examined whether the PKA phosphorylation sites of SIK1 and SIK2 are involved in sleep regulation by generating Sik1S577A and Sik2S587A mice. The homozygous Sik1S577A mice showed a shorter wake time, longer NREMS time, and higher NREMS delta density than the wild-type mice. The heterozygous and homozygous Sik2S587A mice showed increased NREMS delta density. Both the Sik1S577A and Sik2S587A mice exhibited proper homeostatic regulation of sleep need after sleep deprivation. Despite abundant expression of Sik1 in the suprachiasmatic nucleus, the Sik1S577A mice showed normal circadian behavior. Although Sik2 is highly expressed in brown adipose tissue, the male and female Sik2S587A mice that were fed either a chow or high-fat diet showed similar weight gain as the wild-type littermates. These results suggest that PKA-SIK signaling is involved in the regulation of sleep need.
Adaptation to transients disrupts spatial coherence in binocular rivalry
Authors: Naber Marnix , Stuit Sjoerd , De Kloe Yentl , Van der Stigchel Stefan , Paffen Chris L. E. 
Published: May 2020

AbstractWhen one eye is presented with an image that is distinct from the image presented to the other eye, the eyes start to rival and suppress each other’s image. Binocular rivalry leads to perceptual alternations between the images of each eye, during which only one of the images is perceived at a time. However, when the eyes exert weak and shallow suppression, participants tend to perceive both images intermixed more often. A recent study proposed that the precedence of mixed percepts positively correlates with the degree of adaptation to conflict between the eyes. However, this study neglected the role of visual transients, which covaried with the degree of conflict in the stimulus design. Here we report that not the conflict between the eyes but prolonged and repeated observations of strong visual transients cause participants to report more mixed percepts. We conclude that visual transients, such as sudden changes in contrast, draw attention, strengthen both eyes’ image representations, and facilitate the adaptation to interocular suppression, which consequentially disrupts the spatial coherence in binocular rivalry. This finding is relevant to virtual- and augmented reality for which it is crucial to design stereoscopic environments in which binocular rivalry is limited.