bluuebunny/crossref_metadata_2025_split huggingface dataset:
Microbial therapeutics for acute colitis based on genetically modified Lactococcus lactis hypersecreting IL-1Ra in mice
Authors: Namai Fu , Shigemori Suguru , Ogita Tasuku , Sato Takashi , Shimosato Takeshi 
Published: September 2020

AbstractThe increased incidence of inflammatory bowel disease (IBD) in Western and rapidly Westernizing developing countries poses a global pandemic threat. The development of affordable drugs for treating IBD worldwide is thus a priority. Genetically modified lactic acid bacteria (gmLAB) as microbial therapeutics are inexpensive protein producers suitable for use as carriers of protein to the intestinal mucosa. Here, we successfully constructed gmLAB hypersecreting interleukin 1 receptor antagonist (IL-1Ra). Oral administration of these gmLAB suppressed body weight reduction and exacerbation of the disease activity index score in mice with acute colitis and decreased the number of CD4+IL-17A+cells in the mesenteric lymph nodes. These data suggest that the gmLAB deliver IL-1Ra to the colon, where it inhibits IL-1 signaling. We thus developed a novel IBD therapeutic that blocks IL-1 signaling using a gmLAB protein delivery system. This system could be an inexpensive oral microbial therapeutic.
Loss of desmoglein-2 promotes gallbladder carcinoma progression and resistance to EGFR-targeted therapy through Src kinase activation
Authors: Lee Sang-Hyun , Kim Jin-Man , Lee Dong Gwang , Lee Jangwook , Park Jong-Gil , Han Tae-Su , Cho Hyun-Soo , Cho Young-Lai , Bae Kwang-Hee , Park Young-Jun , Lee Seon-Jin , Lee Moo-Seung , Huh Yong-Min , Jo Deog Yeon , Yun Hwan-Jung , Jeon Heung Jin , Kim Nayoung , Joo Mina , Kim Jang-Seong , Lee Hyo Jin , Min Jeong-Ki 
Published: September 2020

AbstractGallbladder carcinoma (GBC) exhibits poor prognosis due to local recurrence, metastasis, and resistance to targeted therapies. Using clinicopathological analyses of GBC patients along with molecular in vitro and tumor in vivo analysis of GBC cells, we showed that reduction of Dsg2 expression was highly associated with higher T stage, more perineural, and lymphatic invasion. Dsg2-depleted GBC cells exhibited significantly enhanced proliferation, migration, and invasiveness in vitro and tumor growth and metastasis in vivo through Src-mediated signaling activation. Interestingly, Dsg2 binding inhibited Src activation, whereas its loss activated cSrc-mediated EGFR plasma membrane clearance and cytoplasmic localization, which was associated with acquired EGFR-targeted therapy resistance and decreased overall survival. Inhibition of Src activity by dasatinib enhanced therapeutic response to anti-EGFR therapy. Dsg2 status can help stratify predicted patient response to anti-EGFR therapy and Src inhibition could be a promising strategy to improve the clinical efficacy of EGFR-targeted therapy.
Material design of nanocellulose/polymer composites via Pickering emulsion templating
Authors: Fujisawa Shuji 
Published: September 2020

AbstractCellulose nanofiber (CNF) is a crystalline fiber composed of a bundle of cellulose molecular chains and is expected to be used as a new biomass-derived nanomaterial. The CNF has a unique morphology: a few to tens of nanometer width and a submicrometer to micrometer length. Its application to various materials, in particular its utilization as a polymer reinforcing material, has been anticipated due to its excellent mechanical properties. However, CNFs and plastics are generally hard to mix, and thus, it is difficult to combine them at the nanolevel. In this review, we describe the CNF/polymer nanocompositing process from Pickering emulsion. We use ~3 nm-wide wood-derived CNFs and report on the preparation of CNF/polymer homogenous composite films. We also introduce a new type of CNF/polymer composite, a core-shell microparticle, using this Pickering emulsion as a template.
Keep it simple: streamlining book illustrations improves attention and comprehension in beginning readers
Authors: Eng Cassondra M. , Godwin Karrie E. , Fisher Anna V. 
Published: September 2020

AbstractThis study used eye-tracking to examine whether extraneous illustration details—a common design in beginning reader storybooks—promote attentional competition and hinder learning. The study used a within-subject design with first- and second-grade children. Children (n = 60) read a story in a commercially available Standard condition and in a Streamlined condition, in which extraneous illustrations were removed while an eye-tracker recorded children’s gaze shifts away from the text, fixations to extraneous illustrations, and fixations to relevant illustrations. Extraneous illustrations promoted attentional competition and hindered reading comprehension: children made more gaze shifts away from text in the Standard compared to the Streamlined condition, and reading comprehension was significantly higher in the Streamlined condition compared to the Standard condition. Importantly, fixations toward extraneous details accounted for the unique variance in reading comprehension controlling for reading proficiency and attending to relevant illustrations. Furthermore, a follow-up control experiment (n = 60) revealed that these effects did not solely stem from enhanced text saliency in the Streamlined condition and reproduced the finding of a negative relationship between fixations to extraneous details and reading comprehension. This study provides evidence that the design of reading materials can be optimized to promote literacy development in young children.
Global quantitative analysis of the human brain proteome and phosphoproteome in Alzheimer’s disease
Authors: Ping Lingyan , Kundinger Sean R. , Duong Duc M. , Yin Luming , Gearing Marla , Lah James J. , Levey Allan I. , Seyfried Nicholas T. 
Published: September 2020

AbstractAlzheimer’s disease (AD) is characterized by an early, asymptomatic phase (AsymAD) in which individuals exhibit amyloid-beta (Aβ) plaque accumulation in the absence of clinically detectable cognitive decline. Here we report an unbiased multiplex quantitative proteomic and phosphoproteomic analysis using tandem mass tag (TMT) isobaric labeling of human post-mortem cortex (n = 27) across pathology-free controls, AsymAD and symptomatic AD individuals. With off-line high-pH fractionation and liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS) on an Orbitrap Lumos mass spectrometer, we identified 11,378 protein groups across three TMT 11-plex batches. Immobilized metal affinity chromatography (IMAC) was used to enrich for phosphopeptides from the same TMT-labeled cases and 51,736 phosphopeptides were identified. Of these, 48,992 were quantified by TMT reporter ions representing 33,652 unique phosphosites. Two reference standards in each TMT 11-plex were included to assess intra- and inter-batch variance at the protein and peptide level. This comprehensive human brain proteome and phosphoproteome dataset will serve as a valuable resource for the identification of biochemical, cellular and signaling pathways altered during AD progression.
Vegetation traits of pre-Alpine grasslands in southern Germany
Authors: Schucknecht Anne , Krämer Alexander , Asam Sarah , Mejia-Aguilar Abraham , Garcia-Franco Noelia , Schuchardt Max A. , Jentsch Anke , Kiese Ralf 
Published: September 2020

AbstractThe data set contains information on aboveground vegetation traits of > 100 georeferenced locations within ten temperate pre-Alpine grassland plots in southern Germany. The grasslands were sampled in April 2018 for the following traits: bulk canopy height; weight of fresh and dry biomass; dry weight percentage of the plant functional types (PFT) non-green vegetation, legumes, non-leguminous forbs, and graminoids; total green area index (GAI) and PFT-specific GAI; plant water content; plant carbon and nitrogen content (community values and PFT-specific values); as well as leaf mass per area (LMA) of PFT. In addition, a species specific inventory of the plots was conducted in June 2020 and provides plot-level information on grassland type and plant species composition. The data set was obtained within the framework of the SUSALPS project (“Sustainable use of alpine and pre-alpine grassland soils in a changing climate”;https://www.susalps.de/) to providein-situdata for the calibration and validation of remote sensing based models to estimate grassland traits.
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Authors: Carradec Quentin , Poulain Julie , Boissin Emilie , Hume Benjamin C. C. , Voolstra Christian R. , Ziegler Maren , Engelen Stefan , Cruaud Corinne , Planes Serge , Wincker Patrick 
Published: September 2020

AbstractMolecular characterization of the coral host and the microbial assemblages associated with it (referred to as the coral holobiont) is currently undertaken via marker gene sequencing. This requires bulky instruments and controlled laboratory conditions which are impractical for environmental experiments in remote areas. Recent advances in sequencing technologies now permit rapid sequencing in the field; however, development of specific protocols and pipelines for the effective processing of complex microbial systems are currently lacking. Here, we used a combination of 3 marker genes targeting the coral animal host, its symbiotic alga, and the associated bacterial microbiome to characterize 60 coral colonies collected and processed in situ, during the Tara Pacific expedition. We used Oxford Nanopore Technologies to sequence marker gene amplicons and developed bioinformatics pipelines to analyze nanopore reads on a laptop, obtaining results in less than 24 h. Reef scale network analysis of coral-associated bacteria reveals broadly distributed taxa, as well as host-specific associations. Protocols and tools used in this work may be applicable for rapid coral holobiont surveys, immediate adaptation of sampling strategy in the field, and to make informed and timely decisions in the context of the current challenges affecting coral reefs worldwide.
Genetic defects of CHM and visual acuity outcome in 24 choroideremia patients from 16 Japanese families
Authors: Hayashi Takaaki , Kameya Shuhei , Mizobuchi Kei , Kubota Daiki , Kikuchi Sachiko , Yoshitake Kazutoshi , Mizota Atsushi , Murakami Akira , Iwata Takeshi , Nakano Tadashi 
Published: September 2020

AbstractChoroideremia (CHM) is an incurable progressive chorioretinal dystrophy. Little is known about the natural disease course of visual acuity in the Japanese population. We aimed to investigate the genetic spectrum of the CHM gene and visual acuity outcomes in 24 CHM patients from 16 Japanese families. We measured decimal best-corrected visual acuity (BCVA) at presentation and follow-up, converted to logMAR units for statistical analysis. Sanger and/or whole-exome sequencing were performed to identify pathogenic CHM variants/deletions. The median age at presentation was 37.0 years (range, 5–76 years). The mean follow-up interval was 8.2 years. BCVA of the better-seeing eye at presentation was significantly worsened with increasing age (r = 0.515, p < 0.01), with a high rate of BCVA decline in patients > 40 years old. A Kaplan–Meier survival curve suggested that a BCVA of Snellen equivalent 20/40 at follow-up remains until the fifties. Fourteen pathogenic variants, 6 of which were novel [c.49 + 5G > A, c.116 + 5G > A, p.(Gly176Glu, Glu177Ter), p.Tyr531Ter, an exon 2 deletion, and a 5.0-Mb deletion], were identified in 15 families. No variant was found in one family only. Our BCVA outcome data are useful for predicting visual prognosis and determining the timing of intervention in Japanese patients with CHM variants.
Effects of HIV-1 genotype on baseline CD4+ cell count and mortality before and after antiretroviral therapy
Authors: Cao Zhiqiang , Li Jianjun , Chen Huanhuan , Song Chang , Shen Zhiyong , Zhou Xinjuan , Lan Guanghua , Zhu Qiuying , Liang Shujia , Xing Hui , Liao Lingjie , Feng Yi , Shao Yiming , Ruan Yuhua 
Published: September 2020

AbstractTo assess whether human immunodeficiency virus type 1 (HIV-1) genotype influences baseline CD4+ T lymphocyte (CD4+) cell count and mortality of patients. The study was conducted from 2014 to 2019 in Guangxi, China, and included 2845 newly diagnosed HIV patients. We used a median regression model to compare CD4+ cell counts in patients newly diagnosed with different HIV-1 genotypes, and a Cox regression model to analyze the associations between HIV-1 genotypes and mortality before and after antiretroviral treatment (ART). In newly diagnosed HIV patients, the baseline CD4+ cell counts of patients with CRF01_AE were significantly lower than those of patients with CRF07_BC, CRF08_BC, and other genotypes. Compared with CRF01_AE, patients infected with CRF07_BC (hazard ratio, 0.55; 95% CI 0.36–0.85), CRF08_BC (hazard ratio, 0.67; 95% CI 0.52–0.85), or other genotypes (hazard ratio, 0.52; 95% CI 0.29–0.94) had significantly lower mortality rates before ART. There were no significant associations between different HIV-1 genotypes and mortality after ART. HIV-1 genotype significantly influences baseline CD4+ cell count and mortality before ART in newly diagnosed HIV patients. We find no significant difference in the outcome of death after ART in patients with different HIV-1 genotypes.
Immune dysfunction following COVID-19, especially in severe patients
Authors: Song Cong-Ying , Xu Jia , He Jian-Qin , Lu Yuan-Qiang 
Published: September 2020

AbstractThe coronavirus disease 2019 (COVID-19) has been spreading worldwide. Severe cases quickly progressed with unfavorable outcomes. We aim to investigate the clinical features of COVID-19 and identify the risk factors associated with its progression. Data of confirmed SARS-CoV-2-infected patients and healthy participants were collected. Thirty-seven healthy people and 79 confirmed patients, which include 48 severe patients and 31 mild patients, were recruited. COVID-19 patients presented with dysregulated immune response (decreased T, B, and NK cells and increased inflammatory cytokines). Also, they were found to have increased levels of white blood cell, neutrophil count, and D-dimer in severe cases. Moreover, lymphocyte, CD4+ T cell, CD8+ T cell, NK cell, and B cell counts were lower in the severe group. Multivariate logistic regression analysis showed that CD4+ cell count, neutrophil-to-lymphocyte ratio (NLR) and D-dimer were risk factors for severe cases. Both CT score and clinical pulmonary infection score (CPIS) were associated with disease severity. The receiver operating characteristic (ROC) curve analysis has shown that all these parameters and scores had quite a high predictive value. Immune dysfunction plays critical roles in disease progression. Early and constant surveillance of complete blood cell count, T lymphocyte subsets, coagulation function, CT scan and CPIS was recommended for early screening of severe cases.
Soft channel formation and symmetry breaking in exotic active emulsions
Authors: Carenza L. N. , Gonnella G. , Lamura A. , Marenduzzo D. , Negro G. , Tiribocchi A. 
Published: September 2020

AbstractWe use computer simulations to study the morphology and rheological properties of a bidimensional emulsion resulting from a mixture of a passive isotropic fluid and an active contractile polar gel, in the presence of a surfactant that favours the emulsification of the two phases. By varying the intensity of the contractile activity and of an externally imposed shear flow, we find three possible morphologies. For low shear rates, a simple lamellar state is obtained. For intermediate activity and shear rate, an asymmetric state emerges, which is characterized by shear and concentration banding at the polar/isotropic interface. A further increment in the active forcing leads to the self-assembly of a soft channel where an isotropic fluid flows between two layers of active material. We characterize the stability of this state by performing a dynamical test varying the intensity of the active forcing and shear rate. Finally, we address the rheological properties of the system by measuring the effective shear viscosity, finding that this increases as active forcing is increased—so that the fluid thickens with activity.
Impairment of cerebellar long-term depression and GABAergic transmission in prion protein deficient mice ectopically expressing PrPLP/Dpl
Authors: Kishimoto Yasushi , Hirono Moritoshi , Atarashi Ryuichiro , Sakaguchi Suehiro , Yoshioka Tohru , Katamine Shigeru , Kirino Yutaka 
Published: September 2020

AbstractPrion protein (PrPC) knockout mice, named as the “Ngsk” strain (Ngsk Prnp0/0 mice), show late-onset cerebellar Purkinje cell (PC) degeneration because of ectopic overexpression of PrPC-like protein (PrPLP/Dpl). Our previous study indicated that the mutant mice also exhibited alterations in cerebellum-dependent delay eyeblink conditioning, even at a young age (16 weeks of age) when neurological changes had not occurred. Thus, this electrophysiological study was designed to examine the synaptic function of the cerebellar cortex in juvenile Ngsk Prnp0/0 mice. We showed that Ngsk Prnp0/0 mice exhibited normal paired-pulse facilitation but impaired long-term depression of excitatory synaptic transmission at synapses between parallel fibres and PCs. GABAA-mediated inhibitory postsynaptic currents recorded from PCs were also weakened in Ngsk Prnp0/0 mice. Furthermore, we confirmed that Ngsk Prnp0/0 mice (7–8-week-old) exhibited abnormalities in delay eyeblink conditioning. Our findings suggest that these alterations in both excitatory and inhibitory synaptic transmission to PCs caused deficits in delay eyeblink conditioning of Ngsk Prnp0/0 mice. Therefore, the Ngsk Prnp0/0 mouse model can contribute to study underlying mechanisms for impairments of synaptic transmission and neural plasticity, and cognitive deficits in the central nervous system.
Towards valorizing natural coals in sodium-ion batteries: impact of coal rank on energy storage
Authors: Abou-Rjeily John , Laziz Noureddine Ait , Autret-Lambert Cecile , Outzourhit Abdelkader , Sougrati Moulay-Tahar , Ghamouss Fouad 
Published: September 2020

AbstractCoal samples of different ranks were investigated through various compositional, morphological/structural, and textural experiments prior to their electrochemical implementation in Na-ion half-cells. The purity of coals proved insignificant while distinctions in the flake size, pore width, pore distribution, ID/IG ratio, crystallite parameters (La and Lc) along with adjacent parameters, such as the R-empirical parameter, i.e., limited parallel graphene stacking proved more relevant for Na+ storage into the negative host electrodes. Coal powders were identified via a two-step TGA analysis technique displaying the overall carbon content of the coals and the impurities. Coal-based anode materials were prepared from raw and pyrolyzed coals (at 800 °C under argon gas-flow) and cycled in Na-ion half-cells to further investigate the impact of the coal rank on the energetic properties. High volatile bituminous coal with lower graphene stacking and augmented nanoscopic pores delivered higher reversible capacity in comparison with semi-anthracite coal, whether in their raw (67 vs. 54 mAh/g) or pyrolyzed (214 vs. 64 mAh/g) states, respectively vs. Na/Na+. The dominance of HVBC over SAC due to enhanced properties as R-empirical parameter, ID/IG ratio, and internal porosity. This study provides an exhaustive methodology to assess other carbonaceous anode materials further to evaluate their energy storage capabilities.
The moderating role of underlying predictors of survival in patients with brain stroke: a statistical modeling
Authors: Someeh Nasrin , Shamshirgaran Seyed Morteza , Farzipoor Farshid , Asghari-Jafarabadi Mohammad 
Published: September 2020

AbstractDetermining subclinical Brain stroke (BS) risk factors may allow for early and more operative BS prevention measures to find the main risk factors and moderating effects of survival in patients with BS. In this prospective study, a total of 332 patients were recruited from 2004 up to 2018. Cox's proportional hazard regressions were used to analyze the predictors of survival and the moderating effect by introducing the interaction effects. The survival probability 1-, 5- and 10-year death rates were 0.254, 0.053, and 0. 023, respectively. The most important risk factors for predicting BS were age category, sex, history of blood pressure, history of diabetes, history of hyperlipoproteinemia, oral contraceptive pill, hemorrhagic cerebrovascular accident. Interestingly, the age category and education level, smoking and using oral contraceptive pill moderates the relationship between the history of cerebrovascular accident, history of heart disease, and history of blood pressure with the hazard of BS, respectively. Instead of considerable advances in the treatment of the patient with BS, effective BS prevention remains the best means for dropping the BS load regarding the related factors found in this study.
Age-specific modulation of intermuscular beta coherence during gait before and after experimentally induced fatigue
Authors: dos Santos Paulo Cezar Rocha , Lamoth Claudine J. C. , Barbieri Fabio Augusto , Zijdewind Inge , Gobbi Lilian Teresa Bucken , Hortobágyi Tibor 
Published: September 2020

AbstractWe examined the effects of age on intermuscular beta-band (15–35 Hz) coherence during treadmill walking before and after experimentally induced fatigue. Older (n = 12) and younger (n = 12) adults walked on a treadmill at 1.2 m/s for 3 min before and after repetitive sit-to-stand, rSTS, to induce muscle fatigability. We measured stride outcomes and coherence from 100 steps in the dominant leg for the synergistic (biceps femoris (BF)-semitendinosus, rectus femoris (RF)-vastus lateralis (VL), gastrocnemius lateralis (GL)-Soleus (SL), tibialis anterior (TA)-peroneus longus (PL)) and for the antagonistic (RF-BF and TA-GL) muscle pairs at late swing and early stance. Older vs. younger adults had 43–62% lower GL-SL, RF-VL coherence in swing and TA-PL and RF-VL coherence in stance. After rSTS, RF-BF coherence in late swing decreased by ~ 20% and TA-PL increased by 16% independent of age (p = 0.02). Also, GL-SL coherence decreased by ~ 23% and increased by ~ 23% in younger and older, respectively. Age affects the oscillatory coupling between synergistic muscle pairs, delivered presumably via corticospinal tracts, during treadmill walking. Muscle fatigability elicits age-specific changes in the common fluctuations in muscle activity, which could be interpreted as a compensation for muscle fatigability to maintain gait performance.