bluuebunny/crossref_metadata_2025_split huggingface dataset:
Needle Heating During Interventional Magnetic Resonance Imaging at 1.5- and 3.0-T Field Strengths
Authors: Khodarahmi Iman , Bonham Luke W. , Weiss Clifford R. , Fritz Jan 
Published: March 2020

Objectives
The aim of this study was to test the hypothesis that clinically used magnetic resonance (MR)–conditional needles of varying lengths, orientations, locations, and pulse sequences can result in excessive heating during MR imaging (MRI)–guided interventions that can be minimized to physiological ranges with proper selection of the needle length, needle position, and modification of pulse sequence parameters.

Materials and Methods
We simulated a clinical interventional MRI setting with 2 standard American Society for Testing and Materials F2182-11A phantoms and measured temperatures with fiber optic sensors. Temperature profiles were monitored for commercial 10, 15 and 20 cm MR-conditional cobalt-chromium needles in clinically relevant perpendicular, 45-degree oblique, and parallel orientations relative to the static magnetic field (B0) and center, right off-center, and left off-center needle tip locations in the z = 0 plane. Clinically available interventional MRI pulse sequences including turbo spin echo (TSE), fast TSE, slice encoding for metal artifact correction, compressed sensing slice encoding for metal artifact correction, half-Fourier acquisition single-shot TSE (HASTE), HASTE inversion recovery, fluoroscopic steady-state gradient echo (3.0 T only), fast low-angle shot gradient echo, and volumetric interpolated breath-hold examination gradient echo pulse sequences were tested at 1.5 and 3.0 T field strengths. Acquired temperature data were analyzed using Friedman and Wilcoxon signed-rank tests with Bonferroni correction.

Results
After 5-minute of continuous MRI, less than 2.5°C heating occurred when needles were oriented perpendicular and 45-degree oblique to B0, regardless of field strengths. Higher temperature rises capable of causing permanent tissue damage were observed when needles were oriented in parallel to B0 (1.5 T: 22°C with 20 cm needles, 3.0 T: 8°C with 10 and 15 cm needles) using higher radiofrequency energy pulse sequences, such as TSE and HASTE. Left off-center location, parallel orientation, and needle lengths close to half of the radiofrequency pulse wavelength were positively associated with higher temperature rises.

Conclusions
Under the herein used experimental conditions, clinically used MR-conditional needles can heat to supraphysiologic temperatures during prolonged MRI at 1.5 and 3.0 T field strengths; however, the temperature rise can be balanced to physiological ranges with proper selection of needle length, needle orientation, and pulse sequence parameters. Caution must be exercised when using different MRI systems, as results may not directly translate.
Lesion Detectability and Radiation Dose in Spiral Breast CT With Photon-Counting Detector Technology
Authors: Shim Sojin , Saltybaeva Natalia , Berger Nicole , Marcon Magda , Alkadhi Hatem , Boss Andreas 
Published: March 2020

Objectives
The aim of the article was to evaluate the lesion detectability, image quality, and radiation dose of a dedicated clinical spiral breast computed tomography (CT) system equipped with a photon-counting detector, and to propose optimal scan parameter settings to achieve low patient dose levels and optimal image quality.

Methods
A breast phantom containing inserts mimicking microcalcifications (diameters 196, 290, and 400 μm) and masses (diameters 1.8, 3.18, 4.76, and 6.32 mm) was examined in a spiral breast CT system with systematic variations of x-ray tube currents between 5 and 125 mA, using 2 slabs of 100 and 160 mm. Signal-to-noise ratio and contrast-to-noise ratio measurements were performed by region of interest analysis. Two experienced radiologists assessed the detectability of the inserts. The average absorbed dose was calculated in Monte Carlo simulations.

Results
Microcalcifications in diameters of 290 and 400 μm and masses in diameters of 3.18, 4.76, and 6.32 mm were visible for all tube currents between 5 and 125 mA. Soft tissue masses in a diameter of 1.8 mm were visible at tube currents of 25 mA and higher. Microcalcifications with a diameter of 196 μm were detectable at a tube current of 25 mA and higher in the small, and at a tube current of 40 mA and higher in the large slab. For the small and large breast, at a tube current of 25 and 40 mA, an average dose value of 4.30 ± 0.01 and 5.70 ± 0.02 mGy was calculated, respectively.

Conclusions
Optimizing tube current of spiral breast CT according to the breast size enables the visualization of microcalcifications as small as 196 μm while keeping dose values in the range of conventional mammography.
The Future of Computed Tomography
Authors: Alkadhi Hatem , Euler André 
Published: March 2020

Abstract
Modern medicine cannot be imagined without the diagnostic capabilities of computed tomography (CT). Although the past decade witnessed a tremendous increase in scan speed, volume coverage, and temporal resolution, along with a considerable reduction of radiation dose, current trends in CT aim toward more patient-centric, tailored imaging approaches that deliver diagnostic information being personalized to each individual patient. Functional CT with dual-and multienergy, as well as dynamic, perfusion imaging became clinical reality and will further prosper in the near future, and upcoming photon-counting detectors will deliver images at a heretofore unmatched spatial resolution.
This article aims to provide an overview of current trends in CT imaging, taking into account the potential of photon-counting detector systems, and seeks to illustrate how the future of CT will be shaped.
Continuum thermomechanics of nonlinear micromorphic, strain and stress gradient media
Authors: Forest Samuel 
Published: March 2020

A comprehensive constitutive theory for the thermo-mechanical behaviour of generalized continua is established within the framework of continuum thermodynamics of irreversible processes. It represents an extension of the class of generalized standard materials to higher order and higher grade continuum theories. It reconciles most existing frameworks and proposes some new extensions for micromorphic and strain gradient media. The special case of strain gradient plasticity is also included as a contribution to the current debate on the consideration of energetic and dissipative mechanisms. Finally, the stress gradient continuum theory emerges as a new research field for which an elastic-viscoplastic theory at finite deformations is provided for the first time.
This article is part of the theme issue ‘Fundamental aspects of nonequilibrium thermodynamics’.
Relationships between rational extended thermodynamics and extended irreversible thermodynamics
Authors: Jou David 
Published: March 2020

We consider a few conceptual questions on extended thermodynamics, with the aim to contribute to a higher contact between rational extended thermodynamics and extended irreversible thermodynamics. Both theories take a number of fluxes as independent variables, but they differ in the formalism being used to deal with the exploitation of the second principle (rational thermodynamics in the first one and classical irreversible thermodynamics in the second one). Rational extended thermodynamics is more restricted in the range of systems to be analysed, but it is able to obtain a wider number of restrictions and deeper specifications from the second law. By contrast, extended irreversible thermodynamics is more phenomenological, its mathematical formalism is more elementary, but it may deal with a wider diversity of systems although with less detail. Further comparison and dialogue between both branches of extended thermodynamics would be useful for a fuller deployment and deepening of extended thermodynamics. Besides these two approaches, one should also consider the Hamiltonian approach, formalisms with internal variables, and more microscopic approaches, based on kinetic theory or on non-equilibrium ensemble formalisms.
This article is part of the theme issue ‘Fundamental aspects of nonequilibrium thermodynamics’.
Comparative Genomic Analysis of Rapidly Evolving SARS-CoV-2 Viruses Reveal Mosaic Pattern of Phylogeographical Distribution
Authors: Kumar Roshan , Verma Helianthous , Singhvi Nirjara , Sood Utkarsh , Gupta Vipin , Singh Mona , Kumari Rashmi , Hira Princy , Nagar Shekhar , Talwar Chandni , Nayyar Namita , Anand Shailly , Rawat Charu Dogra , Verma Mansi , Negi Ram Krishan , Singh Yogendra , Lal Rup 
Published: March 2020

AbstractThe Coronavirus Disease-2019 (COVID-19) that started in Wuhan, China in December 2019 has spread worldwide emerging as a global pandemic. The severe respiratory pneumonia caused by the novel SARS-CoV-2 has so far claimed more than 60,000 lives and has impacted human lives worldwide. However, as the novel SARS-CoV-2 displays high transmission rates, their underlying genomic severity is required to be fully understood. We studied the complete genomes of 95 SARS-CoV-2 strains from different geographical regions worldwide to uncover the pattern of the spread of the virus. We show that there is no direct transmission pattern of the virus among neighboring countries suggesting that the outbreak is a result of travel of infected humans to different countries. We revealed unique single nucleotide polymorphisms (SNPs) in nsp13-16 (ORF1b polyprotein) and S-Protein within 10 viral isolates from the USA. These viral proteins are involved in RNA replication, indicating highly evolved viral strains circulating in the population of USA than other countries. Furthermore, we found an amino acid addition in nsp16 (mRNA cap-1 methyltransferase) of the USA isolate (MT188341) leading to shift in amino acid frame from position 2540 onwards. Through the construction of SARS-CoV-2-human interactome, we further revealed that multiple host proteins (PHB, PPP1CA, TGF-β, SOCS3, STAT3, JAK1/2, SMAD3, BCL2, CAV1 & SPECC1) are manipulated by the viral proteins (nsp2, PL-PRO, N-protein, ORF7a, M-S-ORF3a complex, nsp7-nsp8-nsp9-RdRp complex) for mediating host immune evasion. Thus, the replicative machinery of SARS-CoV-2 is fast evolving to evade host challenges which need to be considered for developing effective treatment strategies.
Mitigation and herd immunity strategy for COVID-19 is likely to fail
Authors: Adamik Barbara , Bawiec Marek , Bezborodov Viktor , Bock Wolfgang , Bodych Marcin , Burgard Jan Pablo , Götz Thomas , Krueger Tyll , Migalska Agata , Pabjan Barbara , Ożański Tomasz , Rafajłowicz Ewaryst , Rafajłowicz Wojciech , Skubalska-Rafajłowicz Ewa , Ryfczyńska Sara , Szczurek Ewa , Szymański Piotr 
Published: March 2020

AbstractOn the basis of a semi-realistic SIR microsimulation for Germany and Poland, we show that the R0 parameter interval for which the COVID-19 epidemic stays overcritical but below the capacity limit of the health care system to reach herd immunity is so narrow that a successful implementation of this strategy is likely to fail, which is in contrast to results obtained from classical differential equation models. Our microsimulation is based on official census data and involves household composition and age distribution as the main population structure variables. Outside household contacts are characterised by an out-reproduction number R* which is the only free parameter of the model. For a subcritical domain we compute the time till extinction and prevalence as a function of the initial number of infected individuals and R*. For the Polish city of Wrocław we also discuss the combined impact of testing coverage and contact reduction. For both countries we estimate R* for disease progression until 20th of March 2020.
A novel full-reduced HMGB1 and kartogenin-containing bio-active scaffold for meniscus regeneration
Authors: Xu Hongyao , Dai Zhihong , Zou Xiangjie , Xia Pengcheng , Aboudi Mohammad Ahmad , Wang Jingwen , Foon Warren Alexander Lam Sung , Huang He 
Published: March 2020

AbstractA novel bio-active scaffold for enhancing wounded meniscus healing has been developed by combination of High mobility group box 1 protein (HMGB1) and kartogenin (KGN) with alginate gel. The properties of the bio-active scaffold were also investigated using anin vitrocell culture model andin vivorat wounded meniscus healing model. This HMGB1-KGN-containing bioactive scaffold released HMGB1 and KGN into wound area and kept high concentrations of HMGB1 and KGN in the system for more than two weeks. This HMGB1-KGN-containing bioactive scaffold also activated rat bone marrow stem cells (BMSCs) from G0to GAlertstage and promoted cell proliferation as evidenced by 5-bromo-2-deoxyuridine (BrdU) incorporation testing. Our results also demonstrated that the HMGB1-KGN-containing bioactive scaffold induced cell migrationin vitroand recruited the cells to wound area to promote wounded rat meniscus healingin vivo.
First month of the epidemic caused by COVID-19 in Italy: current status and real-time outbreak development forecast
Authors: Megna Rosario 
Published: March 2020

AbstractBackgroundThe first outbreaks of COVID-19 in Italy occurred during the second half of February 2020 in some areas in the North of the country. Due to the high contagiousness of the infection, further spread by asymptomatic people, Italy has become in a few weeks the country with the greatest number of infected people after China. The large number of severe cases among infected people in Italy led to the hospitalization of thousands of patients, with a heavy burden on the National Health Service.MethodsWe analyzed data provided daily by Italian Authorities for the period from 24 February 2020 to 26 March 2020. Considering such information, we developed a forecast model in real-time, based on the cumulative logistic distribution. We then produced an estimate of the overall number of potentially infected individuals and epidemic duration at a national and Regional level, for the most affected Regions.ResultsWe reported the daily distribution of performed swabs and confirmed cases, and the cumulative distribution of confirmed cases, of patients quarantined at home (42%), hospitalized in non-intensive care (31%), recovered or discharged (13%), deceased (10%), and hospitalized in intensive care (4%). The forecast model estimated a number of infected persons for Italy of 115,000 about, and a duration of the epidemic not less than 2 months.ConclusionsOnce month after the first outbreaks there seems to be the first signs of a decrease in the number of infections, showing that we could be now facing the descending phase of the epidemic. The forecast obtained thanks to our model could be used by decision-makers to implement coordinative and collaborative efforts in order to control the epidemic.
Can ocular dominance plasticity provide a general index to visual plasticity to personalize treatment in amblyopia?
Authors: Tao Chunwen , He Zhifen , Chen Yiya , Zhou Jiawei , Hess Robert F. 
Published: March 2020

AbstractPurposeRecently, Lunghi et al showed that amblyopic eye’s visual acuity per se after 2 months of occlusion therapy could be predicted by a homeostatic plasticity, i.e., the temporary shift of ocular dominance observed after a 2-hour monocular deprivation, in children with anisometropic amblyopia(Lunghi et al., 2016). In this study, we assess whether the visual acuity improvement of the amblyopic eye measured after 2 months of occlusion therapy could be predicted by this plasticity.MethodsSeven children (6.86 ± 1.46 years old; SD) with anisometropic amblyopia participated in this study. All patients were newly diagnosed and had no treatment history before participating in our study. They had finished 2 months of refractive adaptation and then received a 4-hour daily fellow eye patching therapy with an opaque patch for a 2-month period. Best-corrected visual acuity of the amblyopic eye was measured before and after the patching therapy. The homeostatic plasticity was assessed by measuring the temporary shift of ocular dominance observed after 2 hours of occlusion for the amblyopic eye before the treatment started. A binocular phase combination paradigm was used for this test.ResultsWe found that there was no significant correlation between the temporary shift of ocular dominance observed after 2 hours of occlusion for the amblyopic eye before the treatment started and the visual acuity gain obtained by the amblyopic eye from 2-month of classical patching therapy. This result involving the short-term patching of the amblyopic eye is consistent with a reanalysis of Lunghi et al’ s data.ConclusionsOcular dominance plasticity does not provide an index of cortical plasticity in the general sense such that it could be used to predict acuity outcomes from longer term classical patching.
Homeostatic control of synaptic rewiring in recurrent networks induces the formation of stable memory engrams
Authors: Gallinaro Júlia V. , Gašparović Nebojša , Rotter Stefan 
Published: March 2020

AbstractBrain networks store new memories using functional and structural synaptic plasticity. Memory formation is generally attributed to Hebbian plasticity, while homeostatic plasticity is thought to have an ancillary role in stabilizing network dynamics. Here we report that homeostatic plasticity alone can also lead to the formation of stable memories. We analyze this phenomenon using a new theory of network remodeling, combined with numerical simulations of recurrent spiking neural networks that exhibit structural plasticity based on firing rate homeostasis. These networks are able to store repeatedly presented patterns and recall them upon the presentation of incomplete cues. Storage is fast, governed by the homeostatic drift. In contrast, forgetting is slow, driven by a diffusion process. Joint stimulation of neurons induces the growth of associative connections between them, leading to the formation of memory engrams. These memories are stored in a distributed fashion throughout connectivity matrix, and individual synaptic connections have only a small influence. Although memory-specific connections are increased in number, the total number of inputs and outputs of neurons undergo only small changes during stimulation. We find that homeostatic structural plasticity induces a specific type of “silent memories”, different from conventional attractor states.
Soybean Yellow Stripe-like7 is a symbiosome membrane peptide transporter essential for nitrogen fixation
Authors: Gavrin A , Loughlin PC , Brear EM , Griffith OW , Bedon F , Suter Grotemeyer M , Escudero V , Reguera M , Qu Y , Mohd-Noor SN , Chen C , Osorio MB , Rentsch D , González-Guerrero M , Day DA , Smith PMC 
Published: March 2020

ABSTRACTLegumes form a symbiosis with rhizobia that convert atmospheric nitrogen (N2) to ammonia which they provide to the plant in return for a carbon and nutrient supply. Nodules, developed as part of the symbiosis, harbor rhizobia which are enclosed in the plant-derived symbiosome membrane (SM), to form a symbiosome. In the mature nodule all exchanges between the symbionts occur across the SM. Here we characterize GmYSL7, a member of Yellow stripe-like family which is localized to the SM in soybean nodules. It is expressed specifically in nodule infected cells with expression peaking soon after nitrogenase becomes active. Although most members of the family transport metal complexed with phytosiderophores, GmYSL7 does not. It transports oligopeptides of between four and 12 amino acids. Silencing of GmYSL7 reduces nitrogenase activity and blocks development when symbiosomes contain a single bacteroid. RNAseq of nodules in which GmYSL7 is silenced suggests that the plant initiates a defense response against the rhizobia. There is some evidence that metal transport in the nodules is dysregulated, with upregulation of genes encoding ferritin and vacuolar iron transporter family and downregulation of a gene encoding nicotianamine synthase. However, it is not clear whether the changes are a result of the reduction of nitrogen fixation and the requirement to store excess iron or an indication of a role of GmYSL7 in regulation of metal transport in the nodules. Further work to identify the physiological substrate for GmYSL7 will allow clarification of this role.One sentence summaryGmYSL7 is a symbiosome membrane peptide transporter that is essential for symbiotic nitrogen fixation that when silenced blocks symbiosome development.
Differential Effects of Propofol and Ketamine on Critical Brain Dynamics
Authors: Varley Thomas F. , Sporns Olaf , Puce Aina , Beggs John 
Published: March 2020

AbstractWhether the brain operates at a critical ‘‘tipping” point is a long standing scientific question, with evidence from both cellular and systems-scale studies suggesting that the brain does sit in, or near, a critical regime. Neuroimaging studies of humans in altered states of consciousness have prompted the suggestion that maintenance of critical dynamics is necessary for the emergence of consciousness and complex cognition, and that reduced or disorganized consciousness may be associated with deviations from criticality. Unfortunately, many of the cellular-level studies reporting signs of criticality were performed in non-conscious systems (in vitro neuronal cultures) or unconscious animals (e.g. anaesthetized rats). Here we attempted to address this knowledge gap by exploring critical brain dynamics in invasive ECoG recordings from multiple sessions with a single macaque as the animal transitioned from consciousness to unconsciousness under different anaesthetics (ketamine and propofol). We use a previously-validated test of criticality: avalanche dynamics to assess the differences in brain dynamics between normal consciousness and both drug-states. Propofol and ketamine were selected due to their differential effects on consciousness (ketamine, but not propofol, is known to induce an unusual state known as ‘dissociative anaesthesia”). Our analyses indicate that propofol dramatically restricted the size and duration of avalanches, while ketamine allowed for more awake-like dynamics to persist. In addition, propofol, but not ketamine, triggered a large reduction in the complexity of brain dynamics. All states, however, showed some signs of persistent criticality when testing for exponent relations and universal shape-collapse. Further, maintenance of critical brain dynamics may be important for regulation and control of conscious awareness.Author summaryHere we explore how different anaesthetic drugs change the nature of brain dynamics, using neural activity recorded from sub-dural electrophysiological arrays implanted in a macaque brain. Previous research has suggested that loss of consciousness under anaesthesia is associated with a movement away from critical brain dynamics, towards a less flexible regime. When comparing ketamine and propofol, two anaesthetics with largely different effects on consciousness, we find that propofol, but not ketamine, produces a dramatic reduction in the complexity of brain activity and restricts the range of scales where critical dynamics are plausible. These results suggest that maintenance of critical dynamics may be important for regulation and control of conscious awareness.