bluuebunny/crossref_metadata_2025_split huggingface dataset:
Reflection of strengthening results in values of generalized degrees of metallicity and covalence is principle to new strategy of designing alloys
Authors: Protopopov Evgeny , Dobrykh Syuzanna , Trofimova Yulia , Malenko Pavel , Valter Alexander , Protopopov Alexander 
Published: February 2020

AbstractTo the best of our knowledge, the general approach of designing alloys with specified mechanical properties does not exist. This is due to the unresolved problem of analysing the set of heterogeneous variables that affect the mechanical properties along its production line from the smelting of the alloy to the manufacture of the final product. Here, we show that in principle this problem can be solved by analysing all the strengthening mechanisms in a common reference frame with reference to the single factor namely, the generalized degree of metallicity and covalence, which characterizes the entire interatomic bonds in all phases of the alloy. Such factors are able to reflect the results of hardening by various mechanisms because of the correlation with the mechanical properties. From the energy view point, these factors correspond to the proportion of the metallic and covalent bonds energy in the total energy of all chemical bonds in the alloy. Based on the approach being developed, we considered a method for predicting new doping systems for dispersively strengthening aluminum alloys according to the criterion of a given strength and have considered the methodology of optimizing chemical composition in steel smelting which is used for mass production of parts according to the criterion of the desired mechanical properties obtained due to solid solution hardening.
A three-dimensional momentum-space calculation of three-body bound state in a relativistic Faddeev scheme
Authors: Hadizadeh M. R. , Radin M. , Mohseni K. 
Published: February 2020

AbstractIn this paper, we study the relativistic effects in a three-body bound state. For this purpose, the relativistic form of the Faddeev equations is solved in momentum space as a function of the Jacobi momentum vectors without using a partial wave decomposition. The inputs for the three-dimensional Faddeev integral equation are the off-shell boost two-body t–matrices, which are calculated directly from the boost two-body interactions by solving the Lippmann-Schwinger equation. The matrix elements of the boost interactions are obtained from the nonrelativistic interactions by solving a nonlinear integral equation using an iterative scheme. The relativistic effects on three-body binding energy are calculated for the Malfliet-Tjon potential. Our calculations show that the relativistic effects lead to a roughly 2% reduction in the three-body binding energy. The contribution of different Faddeev components in the normalization of the relativistic three-body wave function is studied in detail. The accuracy of our numerical solutions is tested by calculation of the expectation value of the three-body mass operator, which shows an excellent agreement with the relativistic energy eigenvalue.
Subsurface Cooling Rates and Microstructural Response during Laser Based Metal Additive Manufacturing
Authors: Thampy Vivek , Fong Anthony Y. , Calta Nicholas P. , Wang Jenny , Martin Aiden A. , Depond Philip J. , Kiss Andrew M. , Guss Gabe , Xing Qingfeng , Ott Ryan T. , van Buuren Anthony , Toney Michael F. , Weker Johanna Nelson , Kramer Matthew J. , Matthews Manyalibo J. , Tassone Christopher J. , Stone Kevin H. 
Published: February 2020

AbstractLaser powder bed fusion (LPBF) is a method of additive manufacturing characterized by the rapid scanning of a high powered laser over a thin bed of metallic powder to create a single layer, which may then be built upon to form larger structures. Much of the melting, resolidification, and subsequent cooling take place at much higher rates and with much higher thermal gradients than in traditional metallurgical processes, with much of this occurring below the surface. We have used in situ high speed X-ray diffraction to extract subsurface cooling rates following resolidification from the melt and above the β-transus in titanium alloy Ti-6Al-4V. We observe an inverse relationship with laser power and bulk cooling rates. The measured cooling rates are seen to correlate to the level of residual strain borne by the minority β-Ti phase with increased strain at slower cooling rates. The α-Ti phase shows a lattice contraction which is invariant with cooling rate. We also observe a broadening of the diffraction peaks which is greater for the β-Ti phase at slower cooling rates and a change in the relative phase fraction following LPBF. These results provide a direct measure of the subsurface thermal history and demonstrate its importance to the ultimate quality of additively manufactured materials.
Statin treatment can reduce incidence of early seizure in acute ischemic stroke: A propensity score analysis
Authors: Matsubara Soichiro , Tanaka Tomotaka , Tomari Shinya , Fukuma Kazuki , Ishiyama Hiroyuki , Abe Soichiro , Arimizu Takuro , Yamaguchi Yoshitaka , Ogata Soshiro , Nishimura Kunihiro , Koga Masatoshi , Ando Yukio , Toyoda Kazunori , Ihara Masafumi 
Published: February 2020

AbstractA previous study showed early statin administration in patients with acute ischemic stroke (AIS) was associated with a lower risk of early-onset seizure (ES), which is a high risk of epilepsy, but this retrospective study design may not have eliminated confounding factor effects. We aimed to verify the determinants and prognostic significance of ES and clarify the effects of statin administration. Consecutive AIS patients without a history of epilepsy were enrolled. The relationship between ES (within 7 days of index-stroke) and statin treatment was assessed using multivariate and propensity scores (PS). Of 2,969 patients with AIS, 1,623 (54.6%) were treated with statin, and 66 (2.2%) developed ES. In logistic regression models, cortical stroke lesion [odds ratio (OR), 2.82; 95% confidence interval (CI), 1.29–7.28) and pre-morbid modified Rankin Scale (per 1 point) (OR, 1.39; 95% CI, 1.18–1.65) were higher risks for ES, while statin significantly reduced the risk of ES (OR, 0.44; 95% CI, 0.24–0.79). In accordance with PS-matching, statin treatment produced consistent results for ES after adjusting by inverse probability of treatment-weighting PS (OR, 0.41; 95% CI, 0.22–0.75). In conclusion, as previously, statin treatment was independently associated with a lower risk of ES in AIS.
Ocular Manifestations of Leukemia and Results of Treatment with Intravitreal Methotrexate
Authors: Vishnevskia-Dai Vicktoria , Sella King Sara , Lekach Ruth , Fabian Ido Didi , Zloto Ofira 
Published: February 2020

AbstractOcular involvement in leukemia is considered rare. Ocular symptoms can be the presenting signs of leukemia, they can appear after diagnosis has been established, or they can be the first manifestation of a relapse after remission. We report, to the best of our knowledge for the first time, the ocular manifestation of a series of patients with ocular leukemia and the result of their treatment with intravitreal methotrexate (MTX) injections. This is a retrospective cohort study. The medical records of 12 consecutive patients with ocular leukemia (24 eyes, 11 eyes treated with MTX) treated at the Sheba Medical Center from January 2010 to December 2017 were retrospectively reviewed. Details on ocular inflammatory reaction and tumor cell infiltration at presentation and the end of follow-up were recorded as main outcome measures. The 12 patients included 7 women and 5 men (mean age ± standard deviation at diagnosis 25.92 ± 23.91 years, range 2–82 years). Eleven eyes of 6 patients were treated with intravitreal MTX injections. The indication for treatment was biopsy proven, tumor cell infiltration. The mean number of MTX injections was 3.37 ± 5.35 (range 1–18). The mean follow-up was 27.08 ± 36.79 months (range 1–93). All treated eyes showed improvement in the inflammatory reaction and tumor cell infiltration. In conclusion we found that Intravitreal MTX injections may be an effective therapeutic approach for eyes with intraocular leukemic tumor cell infiltration.
Charge transport mechanism in networks of armchair graphene nanoribbons
Authors: Richter Nils , Chen Zongping , Tries Alexander , Prechtl Thorsten , Narita Akimitsu , Müllen Klaus , Asadi Kamal , Bonn Mischa , Kläui Mathias 
Published: February 2020

AbstractIn graphene nanoribbons (GNRs), the lateral confinement of charge carriers opens a band gap, the key feature that enables novel graphene-based electronics. Despite great progress, reliable and reproducible fabrication of single-ribbon field-effect transistors (FETs) is still a challenge, impeding the understanding of the charge transport. Here, we present reproducible fabrication of armchair GNR-FETs based on networks of nanoribbons and analyze the charge transport mechanism using nine-atom wide and, in particular, five-atom-wide GNRs with large conductivity. We show formation of reliable Ohmic contacts and a yield of functional FETs close to unity by lamination of GNRs to electrodes. Modeling the charge transport in the networks reveals that transport is governed by inter-ribbon hopping mediated by nuclear tunneling, with a hopping length comparable to the physical GNR length. Overcoming the challenge of low-yield single-ribbon transistors by the networks and identifying the corresponding charge transport mechanism is a key step forward for functionalization of GNRs.
First Report of Kosakonia radicincitans Bacteraemia from Europe (Austria) - Identification and Whole-Genome Sequencing of Strain DSM 107547
Authors: Mertschnigg Tanja , Patz Sascha , Becker Matthias , Feierl Gebhard , Ruppel Silke , Bunk Boyke , Spröer Cathrin , Overmann Jörg , Zarfel Gernot 
Published: February 2020

AbstractKosakonia radicincitans is a species within the new genus Kosakonia. Many strains of this genus have been isolated from plants, but some strains are assumed to act as facultative human pathogens. In this study, an in-depth analysis of a Kosakonia isolate from human blood was performed. The strain was originally isolated from blood and identified as a member of the Enterobacter cloacae complex, exhibiting an atypical result in susceptibility testing. Therefore, the genetic background was examined, including phylogenetic classification and screening for virulence factors. Using whole-genome sequencing, the isolate was identified as a K. radicincitans strain, revealing a virulence gene cluster for yersiniabactin biosynthesis in contrast to all other strains of the species. Whole-genome sequencing was the perfect method for identifying putative virulence factors of a particular Kosakonia strain and will help distinguish beneficial strains from pathogenic strains in the future. To our knowledge, this is the first report of Kosakonia-related bacteraemia from Europe.
Robust RNA-Seq of aRNA-amplified single cell material collected by patch clamp
Authors: Kim Jae Mun “Hugo” , Camarena Adrian , Walker Christopher , Lin Ming Yi , Wolseley Victoria , Souaiaia Tade , Thornton Matthew , Grubbs Brendan , Chow Robert H. , Evgrafov Oleg V. , Knowles James A. 
Published: February 2020

AbstractMost single cell RNA sequencing protocols start with single cells dispersed from intact tissue. High-throughput processing of the separated cells is enabled using microfluidics platforms. However, dissociation of tissue results in loss of information about cell location and morphology and potentially alters the transcriptome. An alternative approach for collecting RNA from single cells is to re-purpose the electrophysiological technique of patch clamp recording. A hollow patch pipette is attached to individual cells, enabling the recording of electrical activity, after which the cytoplasm may be extracted for single cell RNA-Seq (“Patch-Seq”). Since the tissue is not disaggregated, the location of cells is readily determined, and the morphology of the cells is maintained, making possible the correlation of single cell transcriptomes with cell location, morphology and electrophysiology. Recent Patch-Seq studies utilizes PCR amplification to increase amount of nucleic acid material to the level required for current sequencing technologies. PCR is prone to create biased libraries – especially with the extremely high degrees of exponential amplification required for single cell amounts of RNA. We compared a PCR-based approach with linear amplifications and demonstrate that aRNA amplification (in vitro transcription, IVT) is more sensitive and robust for single cell RNA collected by a patch clamp pipette.
Manganese-enhanced T1 mapping to quantify myocardial viability: validation with 18F-fluorodeoxyglucose positron emission tomography
Authors: Spath Nick , Tavares Adriana , Gray Gillian A. , Baker Andrew H. , Lennen Ross J. , Alcaide-Corral Carlos J. , Dweck Marc R. , Newby David E. , Yang Phillip C. , Jansen Maurits A. , Semple Scott I. 
Published: February 2020

AbstractGadolinium chelates are widely used in cardiovascular magnetic resonance imaging (MRI) as passive intravascular and extracellular space markers. Manganese, a biologically active paramagnetic calcium analogue, provides novel intracellular myocardial tissue characterisation. We previously showed manganese-enhanced MRI (MEMRI) more accurately quantifies myocardial infarction than gadolinium delayed-enhancement MRI (DEMRI). Here, we evaluated the potential of MEMRI to assess myocardial viability compared to gold-standard 18F-fluorodeoxyglucose (18F-FDG) positron emission tomography (PET) viability. Coronary artery ligation surgery was performed in male Sprague-Dawley rats (n = 13) followed by dual MEMRI and 18F-FDG PET imaging at 10–12 weeks. MEMRI was achieved with unchelated (EVP1001-1) or chelated (mangafodipir) manganese. T1 mapping MRI was followed by 18F-FDG micro-PET, with tissue taken for histological correlation. MEMRI and PET demonstrated good agreement with histology but native T1 underestimated infarct size. Quantification of viability by MEMRI, PET and MTC were similar, irrespective of manganese agent. MEMRI showed superior agreement with PET than native T1. MEMRI showed excellent agreement with PET and MTC viability. Myocardial MEMRI T1 correlated with 18F-FDG standard uptake values and influx constant but not native T1. Our findings indicate that MEMRI identifies and quantifies myocardial viability and has major potential for clinical application in myocardial disease and regenerative therapies.
Claudin-1 decrease impacts epidermal barrier function in atopic dermatitis lesions dose-dependently
Authors: Bergmann Sophia , von Buenau Barbara , Vidal-y-Sy Sabine , Haftek Marek , Wladykowski Ewa , Houdek Pia , Lezius Susanne , Duplan Hélène , Bäsler Katja , Dähnhardt-Pfeiffer Stephan , Gorzelanny Christian , Schneider Stefan W. , Rodriguez Elke , Stölzl Dora , Weidinger Stephan , Brandner Johanna M. 
Published: February 2020

AbstractThe transmembrane protein claudin-1 is a major component of epidermal tight junctions (TJs), which create a dynamic paracellular barrier in the epidermis. Claudin-1 downregulation has been linked to atopic dermatitis (AD) pathogenesis but variable levels of claudin-1 have also been observed in healthy skin. To elucidate the impact of different levels of claudin-1 in healthy and diseased skin we determined claudin-1 levels in AD patients and controls and correlated them to TJ and skin barrier function. We observed a strikingly broad range of claudin-1 levels with stable TJ and overall skin barrier function in healthy and non-lesional skin. However, a significant decrease in TJ barrier function was detected in lesional AD skin where claudin-1 levels were further reduced. Investigations on reconstructed human epidermis expressing different levels of claudin-1 revealed that claudin-1 levels correlated with inside-out and outside-in barrier function, with a higher coherence for smaller molecular tracers. Claudin-1 decrease induced keratinocyte-autonomous IL-1β expression and fostered inflammatory epidermal responses to non-pathogenic Staphylococci. In conclusion, claudin-1 decrease beyond a threshold level results in TJ and epidermal barrier function impairment and induces inflammation in human epidermis. Increasing claudin-1 levels might improve barrier function and decrease inflammation and therefore be a target for AD treatment.
AMST: Alignment to Median Smoothed Template for Focused Ion Beam Scanning Electron Microscopy Image Stacks
Authors: Hennies Julian , Lleti José Miguel Serra , Schieber Nicole L. , Templin Rachel M. , Steyer Anna M. , Schwab Yannick 
Published: February 2020

AbstractAlignment of stacks of serial images generated by Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) is generally performed using translations only, either through slice-by-slice alignments with SIFT or alignment by template matching. However, limitations of these methods are two-fold: the introduction of a bias along the dataset in the z-direction which seriously alters the morphology of observed organelles and a missing compensation for pixel size variations inherent to the image acquisition itself. These pixel size variations result in local misalignments and jumps of a few nanometers in the image data that can compromise downstream image analysis. We introduce a novel approach which enables affine transformations to overcome local misalignments while avoiding the danger of introducing a scaling, rotation or shearing trend along the dataset. Our method first computes a template dataset with an alignment method restricted to translations only. This pre-aligned dataset is then smoothed selectively along the z-axis with a median filter, creating a template to which the raw data is aligned using affine transformations. Our method was applied to FIB-SEM datasets and showed clear improvement of the alignment along the z-axis resulting in a significantly more accurate automatic boundary segmentation using a convolutional neural network.
Excessive antibiotics use increased in-hospital mortality in intracerebral hemorrhage patients with stroke-associated infection
Authors: Wang Fei , Wang Yinghua , Shi Junfeng , Shen Lijuan , Xu Xinyu , Jiang Ting-ting , Wang Li , Chang Qing , Hu Shanyou , Wu Xiao 
Published: February 2020

AbstractIntracerebral hemorrhage (ICH) is associated with higher incidence of stroke-associated infection (SAI) as well as antibiotic use. However, there were few methods for judging proper antibiotic use in clinical manner. We introduce an index of antibiotic use, called personal antibiotic use density (PAUD), to evaluate the relation between antibiotic use and prognosis of ICH patients with SAI. A total of 162 in 570 ICH patients were observed to diagnose as SAI. Comparing with the survival patients, PAUD, ICH volume, National Institutes of Health Stroke Scale (NIHSS) score and ICH score were significantly higher among those who died, while the Glasgow Coma Scale score and the length of stay were significantly lower (P < 0.05). PAUD was identified as an independent risk factor of in-hospital death (OR 2.396, 95% CI 1.412–4.067, P = 0.001). In-hospital mortality was significantly lower in the low (P = 0.027) and intermediate PAUD (P < 0.001) groups than that in the high PAUD group. Cumulative in-hospital survival was significantly higher in low and intermediate PAUD groups (log rank test, P < 0.001). PAUD correlated positively with NIHSS score (r = 0.224, P < 0.001) and in-hospital mortality (r = 0.268, P = 0.001). The study indicated that PAUD is closely related to in-hospital prognosis of ICH patients with SAI. Higher PAUD may not be associated with better prognosis, but instead, higher risk of death.
Assessing right ventricular deformation in hypertrophic cardiomyopathy patients with preserved right ventricular ejection fraction: a 3.0-T cardiovascular magnetic resonance study
Authors: Li Xiang , Shi Ke , Yang Zhi-gang , Guo Ying-kun , Huang Shan , Xia Chun-chao , He Sen , Li Zhen-lin , Li Chen , He Yong 
Published: February 2020

AbstractTo assess the global and regional right ventricular (RV) deformation in hypertrophic cardiomyopathy (HCM) patients with preserved right ventricular ejection fraction (RVEF) using 3.0-T cardiovascular magnetic resonance tissue tracking (CMR-TT). Eighty-two HCM patients and 32 age- and sex-matched healthy controls were enrolled. HCM patients were divided into groups depending on the presence or absence of right ventricular hypertrophy (RVH), RV late gadolinium enhancement (RV-LGE), and left ventricular outflow tract obstruction (LVOTO), respectively. The RV global and apical longitudinal peak strain (LPS) in HCM patients with RVH were significantly lower than that in HCM patients without RVH and controls (P < 0.05). The global, apical and mid-ventricular LPS in HCM patients with RV-LGE were significantly lower than that in HCM patients without RV-LGE and controls (P < 0.05). Lower LPS was demonstrated in HCM patients without RV-LGE compared with controls in apical and mid-ventricular levels (P < 0.05). No significant difference was found regarding global and regional LPS in HCM patients with LVOTO compared without LVOTO (all P > 0.05). CMR-TT was able to detect subclinical RV myocardial deformation prior to RVEF impairment, which was more severe in the presence of RVH and RV-LGE.
Identifying multi-hit carcinogenic gene combinations: Scaling up a weighted set cover algorithm using compressed binary matrix representation on a GPU
Authors: Al Hajri Qais , Dash Sajal , Feng Wu-chun , Garner Harold R. , Anandakrishnan Ramu 
Published: February 2020

AbstractDespite decades of research, effective treatments for most cancers remain elusive. One reason is that different instances of cancer result from different combinations of multiple genetic mutations (hits). Therefore, treatments that may be effective in some cases are not effective in others. We previously developed an algorithm for identifying combinations of carcinogenic genes with mutations (multi-hit combinations), which could suggest a likely cause for individual instances of cancer. Most cancers are estimated to require three or more hits. However, the computational complexity of the algorithm scales exponentially with the number of hits, making it impractical for identifying combinations of more than two hits. To identify combinations of greater than two hits, we used a compressed binary matrix representation, and optimized the algorithm for parallel execution on an NVIDIA V100 graphics processing unit (GPU). With these enhancements, the optimized GPU implementation was on average an estimated 12,144 times faster than the original integer matrix based CPU implementation, for the 3-hit algorithm, allowing us to identify 3-hit combinations. The 3-hit combinations identified using a training set were able to differentiate between tumor and normal samples in a separate test set with 90% overall sensitivity and 93% overall specificity. We illustrate how the distribution of mutations in tumor and normal samples in the multi-hit gene combinations can suggest potential driver mutations for further investigation. With experimental validation, these combinations may provide insight into the etiology of cancer and a rational basis for targeted combination therapy.