bluuebunny/crossref_metadata_2025_split huggingface dataset:
Expert opinion—management of chronic myeloid leukemia after resistance to second-generation tyrosine kinase inhibitors
Authors: Hochhaus Andreas , Breccia Massimo , Saglio Giuseppe , García-Gutiérrez Valentín , Réa Delphine , Janssen Jeroen , Apperley Jane 
Published: May 2020

AbstractRegardless of line of therapy, treatment goals in chronic phase chronic myeloid leukemia (CML) are: avoid progression to accelerated phase or blast crisis CML such that patients achieve a life expectancy comparable with that of the general population; avoid adverse events (AEs); and restore and maintain quality of life. The most important prognostic factor for achieving these goals is response to tyrosine kinase inhibitors (TKIs) at key milestones. For patients failing a TKI, a treatment change is mandatory to limit the risk of progression and death. There is currently no precise guideline for patients that fail a second-generation TKI, and there is a paucity of data to guide clinical decision making in this setting. There is, therefore, an unmet need for practical and actionable guidance on how to manage patients who fail a second-generation TKI. Although the term ‘failure’ includes patients failing for resistance or intolerance, the focus of this paper is failure of a second-generation TKI because of resistance. CML patients who fail their first second-generation TKI for true resistance need a more potent therapy. In these patients, the key issues to consider are the relative appropriateness of early allogeneic hematopoietic stem cell transplantation or the use of a further TKI. Selection of the next line of treatment after second-generation TKI resistance should be individualized and must be based on patient-specific factors including cytogenetics, mutation profile, comorbidities, age, previous history of AEs with prior TKI therapy, and risk profile for AEs on specific TKIs. This expert opinion paper is not in conflict with existing recommendations, but instead represents an evolution of previous notions, based on new data, insights, and clinical experience. We review the treatment options for patients resistant to second-generation TKI therapy and provide our clinical opinions and guidance on key considerations for treatment decision making.
Isocitrate dehydrogenase 2 contributes to radiation resistance of oesophageal squamous cell carcinoma via regulating mitochondrial function and ROS/pAKT signalling
Authors: Chen Xuan , Zhuo Shichao , Xu Wenzhe , Chen Xue , Huang Di , Sun Xiaozheng , Cheng Yufeng 
Published: May 2020

Abstract
Background
Antioxidase alleviates the accumulation of radiation-induced reactive oxygen species (ROS) and therefore has strong connections with radioresistance. Isocitrate dehydrogenase 2 (IDH2) facilitates the turnover of antioxidase, but its role in radiotherapeutic efficiency in oesophageal squamous cell carcinoma (ESCC) still remains elusive.

Methods
The involvement of IDH2 in radiotherapeutic efficacy in ESCC was investigated in vitro and vivo by IDH2 knockdown. IDH2 expression in biopsy specimens of 141 patients was identified to evaluate its clinical significance.

Results
We found that Kyse510 and Kyse140 cells were more radioresistant and had higher IDH2 expression. In these two cell lines, IDH2 knockdown intensified the radiation-induced ROS overload and oxidative damage on lipid, protein, and nucleic acids. In addition, IDH2 silencing aggravated the radiation-induced mitochondrial dysfunction and cell apoptosis and ultimately promoted radiosensitisation via inhibiting AKT phosphorylation in a ROS-dependent manner. Furthermore, IDH2 depletion facilitated the radiation-induced growth inhibition and cell apoptosis in murine xenografts. Finally, IDH2 expression was correlated with definite chemoradiotherapy (dCRT) efficacy and served as an independent prognostic factor for survival of ESCC patients.

Conclusions
IDH2 plays a key role in the radioresistance of ESCC. Targeting IDH2 could be a promising regimen to improve radiotherapeutic efficiency in ESCC patients.
Internalization mechanisms of brain-derived tau oligomers from patients with Alzheimer’s disease, progressive supranuclear palsy and dementia with Lewy bodies
Authors: Puangmalai Nicha , Bhatt Nemil , Montalbano Mauro , Sengupta Urmi , Gaikwad Sagar , Ventura Frank , McAllen Salome , Ellsworth Anna , Garcia Stephanie , Kayed Rakez 
Published: May 2020

AbstractTau aggregates propagate in brain cells and transmit to neighboring cells as well as anatomically connected brain regions by prion-like mechanisms. Soluble tau aggregates (tau oligomers) are the most toxic species that initiate neurodegeneration in tauopathies, such as Alzheimer’s disease (AD), progressive supranuclear palsy (PSP), and dementia with Lewy bodies (DLB). Exogenous tau aggregates have been shown to be internalized by brain cells; however, the precise cellular and molecular mechanisms that underlie the internalization of tau oligomers (TauO) remain elusive. Using brain-derived tau oligomers (BDTOs) from AD, PSP, and DLB patients, we investigated neuronal internalization mechanisms of BDTOs, including the heparan sulfate proteoglycan (HSPG)-mediated pathway, clathrin-mediated pathway, and caveolae-mediated pathway. Here, we demonstrated that the HSPG-mediated pathway regulates internalization of BDTOs from AD and DLB, while HSPG-mediated and other alternative pathways are involved in the internalization of PSP-derived tau oligomers. HSPG antagonism significantly reduced the internalization of TauO, prevented tau translocation to the endosomal–lysosomal system, and decreased levels of hyperphosphorylated tau in neurons, the well-known contributor for neurofibrillary tangles (NFT) accumulation, degeneration of neurons, and cognitive decline. Furthermore, siRNA-mediated silencing of heparan sulfate (HS)-synthesizing enzyme, exostosin-2, leads to decreased internalization of BDTOs, prevented tau-induced autophagy–lysosomal pathway impairment, and decreased hyperphosphorylated tau levels. Collectively, these findings suggest that HSPG-mediated endocytosis and exostsin-2 are involved in neuronal internalization of TauO and subsequent tau-dependent neuropathology in AD and DLB.
Oncogenic driver genes and tumor microenvironment determine the type of liver cancer
Authors: Wang Gang , Wang Qian , Liang Ning , Xue Hongyuan , Yang Tao , Chen Xuguang , Qiu Zhaoyan , Zeng Chao , Sun Tao , Yuan Weitang , Liu Chaoxu , Chen Zhangqian , He Xianli 
Published: May 2020

AbstractPrimary liver cancer (PLC) may be mainly classified as the following four types: hepatocellular carcinoma (HCC), intrahepatic cholangiocarcinoma (ICC), hepatoblastoma (HB), and combined hepatocellular carcinoma and intrahepatic cholangiocarcinoma (cHCC-ICC). The majority of PLC develops in the background of tumor microenvironment, such as inflammatory microenvironments caused by viral hepatitis, alcoholic or nonalcoholic steatohepatitis, carbon tetrachloride (CCl4), 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC), and necroptosis-associated hepatic cytokine microenvironment caused by necroptosis of hepatocytes. However, the impact of different types of microenvironments on the phenotypes of PLC generated by distinct oncogenes is still unclear. In addition, the cell origin of different liver cancers have not been clarified, as far as we know. Recent researches show that mature hepatocytes retain phenotypic plasticity to differentiate into cholangiocytes. More importantly, our results initially demonstrated that HCC, ICC, and cHCC-ICC could originate from mature hepatocytes rather than liver progenitor cells (LPCs), hepatic stellate cells (HSCs) and cholangiocytes in AKT-driven, AKT/NICD-driven and AKT/CAT-driven mouse PLC models respectively by using hydrodynamic transfection methodology. Therefore, liver tumors originated from mature hepatocytes embody a wide spectrum of phenotypes from HCC to CC, possibly including cHCC-ICC and HB. However, the underlying mechanism determining the cancer phenotype of liver tumors has yet to be delineated. In this review, we will provide a summary of the possible mechanisms for directing the cancer phenotype of liver tumors (i.e., ICC, HCC, and cHCC-ICC) in terms of oncogenic driver genes and tumor microenvironment. Moreover, this study initially revealed the cell origin of different types of liver cancer.
Atypical chemokine receptor ACKR3/CXCR7 controls postnatal vasculogenesis and arterial specification by mesenchymal stem cells via Notch signaling
Authors: Wei Sung-Tai , Huang Yen‐Chih , Hsieh Mei-Ling , Lin Yu-Jung , Shyu Woei-Cherng , Chen Hui-Chen , Hsieh Chia-Hung 
Published: May 2020

AbstractMesenchymal stem cells (MSCs) are known to play a role in postnatal vasculogenesis and hold great promise for vascular regeneration. However, the mechanisms by which the endothelial differentiation and specification of MSCs remain unclear. We examined the potential role and molecular mechanisms of atypical chemokine receptor ACKR3/CXCR7 in MSC-mediated endothelial cell differentiation and specification. Here, we showed that vascular endothelial growth factor (VEGF) and platelet-derived growth factor (PDGF) activate CXCR7 expression on MSCs through PDGF receptors, PDGFRα and PDGFRβ-mediated phosphoinositide 3-kinase (PI3K)/Akt signaling. Genetic and pharmacologic blockage of CXCR7 on MSCs suppressed the VEGF or stromal cell-derived factor 1 (SDF)-1-induced the capacity for vasculogenesis in vitro and in vivo. Moreover, CXCR7 gain of function markedly promoted vasculogenesis by MSCs in vitro and in vivo and induced endothelial differentiation along the arterial endothelial cell lineage via upregulation of Notch signaling. However, blockade of Notch signaling inhibited CXCR7-induced vasculogensis by MSCs. These results indicate CXCR7 is a critical regulator of MSC-mediated postnatal vasculogenesis and arterial specification via Notch signaling.
Formate induces a metabolic switch in nucleotide and energy metabolism
Authors: Oizel Kristell , Tait-Mulder Jacqueline , Fernandez-de-Cossio-Diaz Jorge , Pietzke Matthias , Brunton Holly , Lilla Sergio , Dhayade Sandeep , Athineos Dimitri , Blanco Giovanny Rodriguez , Sumpton David , Mackay Gillian M. , Blyth Karen , Zanivan Sara R. , Meiser Johannes , Vazquez Alexei 
Published: May 2020

AbstractFormate is a precursor for the de novo synthesis of purine and deoxythymidine nucleotides. Formate also interacts with energy metabolism by promoting the synthesis of adenine nucleotides. Here we use theoretical modelling together with metabolomics analysis to investigate the link between formate, nucleotide and energy metabolism. We uncover that endogenous or exogenous formate induces a metabolic switch from low to high adenine nucleotide levels, increasing the rate of glycolysis and repressing the AMPK activity. Formate also induces an increase in the pyrimidine precursor orotate and the urea cycle intermediate argininosuccinate, in agreement with the ATP-dependent activities of carbamoyl-phosphate and argininosuccinate synthetase. In vivo data for mouse and human cancers confirms the association between increased formate production, nucleotide and energy metabolism. Finally, the in vitro observations are recapitulated in mice following and intraperitoneal injection of formate. We conclude that formate is a potent regulator of purine, pyrimidine and energy metabolism.
Tumor suppressor death-associated protein kinase 1 inhibits necroptosis by p38 MAPK activation
Authors: Wu Yung-Hsuan , Chou Ting-Fang , Young Leslie , Hsieh Fu-Yi , Pan Hsuan-Yin , Mo Shu-Ting , Brown Shani Bialik , Chen Ruey-Hwa , Kimchi Adi , Lai Ming-Zong 
Published: May 2020

AbstractDeath-associated protein kinase 1 (DAPK1, DAPk, DAPK) is known for its involvement in apoptosis and autophagy-associated cell death. Here, we identified an unexpected function of DAPK1 in suppressing necroptosis. DAPK1-deficiency renders macrophages and dendritic cells susceptible to necroptotic death. We also observed an inhibitory role for DAPK1 in necroptosis in HT-29 cells, since knockdown or knockout of DAPK1 in such cells increased their sensitivity to necroptosis. Increased necroptosis was associated with enhanced formation of the RIPK1–RIPK3–MLKL complex in these DAPK1-deficient cells. We further found that DAPK1-deficiency led to decreased MAPK activated kinase 2 (MK2) activation and reduced RIPK1 S321 phosphorylation, with this latter representing a critical step controlling necrosome formation. Most TNF signaling pathways, including ERK, JNK, and AKT, were not regulated by DAPK. In contrast, DAPK bound p38 MAPK and selectively promoted p38 MAPK activation, resulting in enhanced MK2 phosphorylation. Our results reveal a novel role for DAPK1 in inhibiting necroptosis and illustrate an unexpected selectivity for DAPK1 in promoting p38 MAPK-MK2 activation. Importantly, our study suggests that modulation of necroptosis and p38/MK2-mediated inflammation may be achieved by targeting DAPK1.
Molecular architecture of the luminal ring of the Xenopus laevis nuclear pore complex
Authors: Zhang Yanqing , Li Sai , Zeng Chao , Huang Gaoxingyu , Zhu Xuechen , Wang Qifan , Wang Kunpeng , Zhou Qiang , Yan Chuangye , Zhang Wusheng , Yang Guangwen , Liu Minhao , Tao Qinghua , Lei Jianlin , Shi Yigong 
Published: May 2020

AbstractThe nuclear pore complex (NPC) mediates the flow of substances between the nucleus and cytoplasm in eukaryotic cells. Here we report the cryo-electron tomography (cryo-ET) structure of the luminal ring (LR) of the NPC from Xenopus laevis oocyte. The observed key structural features of the LR are independently confirmed by single-particle cryo-electron microscopy (cryo-EM) analysis. The LR comprises eight butterfly-shaped subunits, each containing two symmetric wings. Each wing consists of four elongated, tubular protomers. Within the LR subunit, the eight protomers form a Finger domain, which directly contacts the fusion between the inner and outer nuclear membranes and a Grid domain, which serves as a rigid base for the Finger domain. Two neighboring LR subunits interact with each other through the lateral edges of their wings to constitute a Bumper domain, which displays two major conformations and appears to cushion neighboring NPCs. Our study reveals previously unknown features of the LR and potentially explains the elastic property of the NPC.
Tuning lithium-peroxide formation and decomposition routes with single-atom catalysts for lithium–oxygen batteries
Authors: Song Li-Na , Zhang Wei , Wang Ying , Ge Xin , Zou Lian-Chun , Wang Huan-Feng , Wang Xiao-Xue , Liu Qing-Chao , Li Fei , Xu Ji-Jing 
Published: May 2020

AbstractLithium-oxygen batteries with ultrahigh energy density have received considerable attention as of the future energy storage technologies. The development of effective electrocatalysts and a corresponding working mechanism during cycling are critically important for lithium-oxygen batteries. Here, a single cobalt atom electrocatalyst is synthesized for lithium-oxygen batteries by a polymer encapsulation strategy. The isolated moieties of single atom catalysts can effectively regulate the distribution of active sites to form micrometre-sized flower-like lithium peroxide and promote the decomposition of lithium peroxide by a one-electron pathway. The battery with single cobalt atoms can operate with high round-trip efficiency (86.2%) and long-term stability (218 days), which is superior to a commercial 5 wt% platinum/carbon catalyst. We reveal that the synergy between a single atom and the support endows the catalyst with excellent stability and durability. The promising results provide insights into the design of highly efficient catalysts for lithium-oxygen batteries and greatly expand the scope of future investigation.
Turbulent coherent structures and early life below the Kolmogorov scale
Authors: Krieger Madison S. , Sinai Sam , Nowak Martin A. 
Published: May 2020

AbstractMajor evolutionary transitions, including the emergence of life, likely occurred in aqueous environments. While the role of water’s chemistry in early life is well studied, the effects of water’s ability to manipulate population structure are less clear. Population structure is known to be critical, as effective replicators must be insulated from parasites. Here, we propose that turbulent coherent structures, long-lasting flow patterns which trap particles, may serve many of the properties associated with compartments — collocalization, division, and merging — which are commonly thought to play a key role in the origins of life and other evolutionary transitions. We substantiate this idea by simulating multiple proposed metabolisms for early life in a simple model of a turbulent flow, and find that balancing the turnover times of biological particles and coherent structures can indeed enhance the likelihood of these metabolisms overcoming extinction either via parasitism or via a lack of metabolic support. Our results suggest that group selection models may be applicable with fewer physical and chemical constraints than previously thought, and apply much more widely in aqueous environments.
Water acting as a catalyst for electron-driven molecular break-up of tetrahydrofuran
Authors: Wang Enliang , Ren Xueguang , Baek WoonYong , Rabus Hans , Pfeifer Thomas , Dorn Alexander 
Published: May 2020

AbstractLow-energy electron-induced reactions in hydrated molecular complexes are important in various fields ranging from the Earth’s environment to radiobiological processes including radiation therapy. Nevertheless, our understanding of the reaction mechanisms in particular in the condensed phase and the role of water in aqueous environments is incomplete. Here we use small hydrogen-bonded pure and mixed dimers of the heterocyclic molecule tetrahydrofuran (THF) and water as models for biochemically relevant systems. For electron-impact-induced ionization of these dimers, a molecular ring-break mechanism is observed, which is absent for the THF monomer. Employing coincident fragment ion mass and electron momentum spectroscopy, and theoretical calculations, we find that ionization of the outermost THF orbital initiates significant rearrangement of the dimer structure increasing the internal energy and leading to THF ring-break. These results demonstrate that the local environment in form of hydrogen-bonded molecules can considerably affect the stability of molecular covalent bonds.
Comprehensive aptamer-based screening identifies a spectrum of urinary biomarkers of lupus nephritis across ethnicities
Authors: Stanley Samantha , Vanarsa Kamala , Soliman Samar , Habazi Deena , Pedroza Claudia , Gidley Gabriel , Zhang Ting , Mohan Shree , Der Evan , Suryawanshi Hemant , Tuschl Thomas , Buyon Jill , Putterman Chaim , Mok Chi Chiu , Petri Michelle , Saxena Ramesh , Mohan Chandra 
Published: May 2020

AbstractEmerging urinary biomarkers continue to show promise in evaluating lupus nephritis (LN). Here, we screen urine from active LN patients for 1129 proteins using an aptamer-based platform, followed by ELISA validation in two independent cohorts comprised of 127 inactive lupus, 107 active LN, 67 active non-renal lupus patients and 74 healthy controls, of three different ethnicities. Urine proteins that best distinguish active LN from inactive disease are ALCAM, PF-4, properdin, and VCAM-1 among African-Americans, sE-selectin, VCAM-1, BFL-1 and Hemopexin among Caucasians, and ALCAM, VCAM-1, TFPI and PF-4 among Asians. Most of these correlate significantly with disease activity indices in the respective ethnic groups, and surpass conventional metrics in identifying active LN, with better sensitivity, and negative/positive predictive values. Several elevated urinary molecules are also expressed within the kidneys in LN, based on single-cell RNAseq analysis. Longitudinal studies are warranted to assess the utility of these biomarkers in tracking lupus nephritis.
Locally coupled electromechanical interfaces based on cytoadhesion-inspired hybrids to identify muscular excitation-contraction signatures
Authors: Cai Pingqiang , Wan Changjin , Pan Liang , Matsuhisa Naoji , He Ke , Cui Zequn , Zhang Wei , Li Chengcheng , Wang Jianwu , Yu Jing , Wang Ming , Jiang Ying , Chen Geng , Chen Xiaodong 
Published: May 2020

AbstractCoupling myoelectric and mechanical signals during voluntary muscle contraction is paramount in human–machine interactions. Spatiotemporal differences in the two signals intrinsically arise from the muscular excitation–contraction process; however, current methods fail to deliver local electromechanical coupling of the process. Here we present the locally coupled electromechanical interface based on a quadra-layered ionotronic hybrid (named as CoupOn) that mimics the transmembrane cytoadhesion architecture. CoupOn simultaneously monitors mechanical strains with a gauge factor of ~34 and surface electromyogram with a signal-to-noise ratio of 32.2 dB. The resolved excitation–contraction signatures of forearm flexor muscles can recognize flexions of different fingers, hand grips of varying strength, and nervous and metabolic muscle fatigue. The orthogonal correlation of hand grip strength with speed is further exploited to manipulate robotic hands for recapitulating corresponding gesture dynamics. It can be envisioned that such locally coupled electromechanical interfaces would endow cyber–human interactions with unprecedented robustness and dexterity.
A chemically self-charging aqueous zinc-ion battery
Authors: Zhang Yan , Wan Fang , Huang Shuo , Wang Shuai , Niu Zhiqiang , Chen Jun 
Published: May 2020

AbstractSelf-charging power systems integrating energy harvesting technologies and batteries are attracting extensive attention in energy technologies. However, the conventional integrated systems are highly dependent on the availability of the energy sources and generally possess complicated configuration. Herein, we develop chemically self-charging aqueous zinc-ion batteries with a simplified two-electrode configuration based on CaV6O16·3H2O electrode. Such system possesses the capability of energy harvesting, conversion and storage simultaneously. It can be chemically self-recharged by the spontaneous redox reaction between the discharged cathode and oxygen from the ambient environment. Chemically self-recharged zinc-ion batteries display an initial open-circuit voltage of about 1.05 V and a considerable discharge capacity of about 239 mAh g−1, indicating the excellent self-rechargeability. Impressively, such chemically self-charging zinc-ion batteries can also work well at chemical or/and galvanostatic charging hybrid modes. This work not only provides a route to design chemically self-charging energy storage, but also broadens the horizons of aqueous zinc-ion batteries.
Exercise enhances motor skill learning by neurotransmitter switching in the adult midbrain
Authors: Li Hui-quan , Spitzer Nicholas C. 
Published: May 2020

AbstractPhysical exercise promotes motor skill learning in normal individuals and those with neurological disorders but its mechanism of action is unclear. We find that one week of voluntary wheel running enhances the acquisition of motor skills in normal adult mice. One week of running also induces switching from ACh to GABA expression in neurons in the caudal pedunculopontine nucleus (cPPN). Consistent with regulation of motor skills, we show that the switching neurons make projections to the substantia nigra (SN), ventral tegmental area (VTA) and ventrolateral-ventromedial nuclei of the thalamus (VL-VM). Use of viral vectors to override transmitter switching blocks the beneficial effect of running on motor skill learning. We suggest that neurotransmitter switching provides the basis by which sustained running benefits motor skill learning, presenting a target for clinical treatment of movement disorders.