bluuebunny/crossref_metadata_2025_split huggingface dataset:
3D modelling of AGB stars with CO5BOLD
Authors: Freytag Bernd , Höfner Susanne , Liljegren Sofie 
Published: January 2020

AbstractLocal three-dimensional radiation-hydrodynamics simulations of patches of the surfaces of solar-type stars, that are governed by small-scale granular convection, have helped analyzing and interpreting observations for decades. These models contributed considerably to the understanding of the atmospheres and indirectly also of the interiors and the active layers above the surface of these stars. Of great help was of course the availability of a close-by prototype of these stars – the sun.In the case of an asymptotic-giant-branch (AGB) star, the convective cells have sizes comparable to the radius of the giant. Therefore, the extensions of the solar-type-star simulations to AGB stars have to be global and cover the entire object, including a large part of the convection zone, the molecule-formation layers in the inner atmosphere, and the dust-formation region in the outer atmosphere. Three-dimensional radiation-hydrodynamics simulations with CO5BOLD show how the interplay of large and small convection cells, waves, pulsations, and shocks, but also molecular and dust opacities of AGB stars create conditions very different from those in the solar atmosphere.Recent CO5BOLD models account for frequency-dependent radiation transport and the formation of two independent dust species for an oxygen-rich composition. The drop of the comparably smooth temperature distribution below a threshold determines to onset of dust formation, further in, at higher temperatures, for aluminium oxides (Al2O3) than for silicates (Mg2SiO4). An uneven dust distribution is mostly caused by inhomogeneities in the density of the shocked gas.
Mid-IR colors and surface brightness fluctuations as tracers of stellar mass-loss in the TP-AGB
Authors: González-Lópezlira Rosa A. 
Published: January 2020

AbstractI present integrated colors and surface brightness fluctuation magnitudes in the mid-IR, derived from stellar population synthesis models that include the effects of the dusty envelopes around TP-AGB stars. The models are based on the Bruzual & Charlot CB* isochrones; they are single-burst, range in age from a few Myr to 14 Gyr, and comprise metallicities between Z = 0.0001 and Z = 0.04. I compare these models to mid-IR data of AGB stars and star clusters in the Magellanic Clouds, and study the effects of varying self-consistently the mass-loss rate, the stellar parameters, and the output spectra of the stars plus their dusty envelopes.
Are the silicate crystallinities of oxygen-rich evolved stars related to their mass loss rates?
Authors: Jiang Biwei , Liu Jiaming , Li Aigen 
Published: January 2020

AbstractA sample of 28 oxygen-rich evolved stars is selected based on the presence of crystalline silicate emission features in their ISO/SWS spectra. The crystallinity, measured as the flux fraction of crystalline silicate features, is found not to be related to mass loss rate that is derived from fitting the spectral energy distribution.
K–Type Supergiants in the Large Magellanic Cloud
Authors: Wing Robert F. 
Published: January 2020

AbstractTwo-dimensional spectral classifications, on a narrow-band photometric system that measures near-infrared bands of TiO and CN, are being obtained for several hundred previously unclassified “suspected late-type supergiants” in the Large Magellanic Cloud. The objective is to identify supergiants of spectral type K, which are known to be plentiful in the Small Magellanic Cloud but were thought to be rare in the LMC. In the fields examined to date, 35 % of the targets are found to be K-type supergiants, while 25 % are early-M supergiants and 40 % are foreground stars of lower luminosity.
Updates on the Ultraviolet Emission from Asymptotic Giant Branch Stars
Authors: Montez Rodolfo , Ramstedt Sofia , Kastner Joel H. , Vlemmings Wouter 
Published: January 2020

AbstractA comprehensive study of UV emission from asymptotic giant branch (AGB) stars with the Galaxy Evolution Explorer (GALEX) revealed that out of the 316 observed AGB stars, 57% were detected in the near-UV (NUV) bandpass and 12% were detected in the far-UV (FUV) bandpass (Montez et al. 2017). A cross-match between our sample and Gaia DR2 results in parallax estimates for 90% of the sample of AGB stars, compared to only 30% from Hipparcos. This increase allowed us to further probe trends and conclusions of our initial study. Specifically, that the detection of UV emission from AGB stars is subject to proximity and favorable lines of sight in our Galaxy. These improved results support the notion that some of the GALEX-detected UV emission is intrinsic to AGB stars, likely due to a combination of photospheric and chromospheric emission.
High angular-resolution infrared imaging and spectra of the carbon-rich AGB star V Hya
Authors: Sahai Raghvendra , Rajagopal Jayadev , Hinkle Kenneth , Joyce Richard , Morris Mark 
Published: January 2020

AbstractThe carbon-rich AGB star V Hya is believed to be in the very brief transition phase between the AGB and a planetary nebula (PN). Using HST/STIS, we previously found a high-velocity (> 200 kms−1) jet or blob of gas ejected only a few years ago from near (< 0.3 arcsec or 150 AU) the star (Sahai et al. 2003, Sahai et al. 2016). From multi-epoch high-resolution spectroscopy we found time-variable high-velocity absorption features in the CO 4.6 μm vibration-rotation lines of V Hya (Sahai et al. 2009). Modeling shows that these are produced in compact clumps of outflowing gas with significant radial temperature gradients consistent with strong shocks. Here, we present very high resolution (∼100 milliarcsecond) imaging of the central region of V Hya using the coronagraphic mode of the Gemini Planet Imager (GPI) in the 1 μm band and spectral-spatial imaging of 4.6 μm CO 1-0 transitions using the Phoenix spectrometer. We report the detection of a compact central dust disk from GPI, and molecular emission from the Phoenix observations at relatively larger scales. We discuss models for the central structures in V Hya, in particular disks and outflows, using these and complementary images in the optical and radio.
The role of AGB stars in Galactic and cosmic chemical enrichment
Authors: Kobayashi Chiaki , Haynes Christopher J. , Vincenzo Fiorenzo 
Published: January 2020

AbstractThe role of asymptotic giant branch (AGB) stars in chemical enrichment is significant for producing 12,13C, 14N, F, 25,26Mg, 17O and slow neutron-capture process (s-process) elements. The contribution from super-AGB stars is negligible in classical, one-zone chemical evolution models, but the mass ranges can be constrained through the contribution from electron-capture supernovae and possibly hybrid C+O+Ne white dwarfs, if they explode as Type Iax supernovae. In addition to the recent s-process yields of AGB stars, we include various sites for rapid neutron-capture processes (r-processes) in our chemodynamical simulations of a Milky Way type galaxy. We find that neither electron-capture supernovae or neutrino-driven winds are able to adequately produce heavy neutron-capture elements such as Eu in quantities to match observations. Both neutron-star mergers (NSMs) and magneto-rotational supernovae (MRSNe) are able to produce these elements in sufficient quantities. Using the distribution in [Eu/(Fe, α)] – [Fe/H], we predict that NSMs alone are unable to explain the observed Eu abundances, but may be able to together with MRSNe. In order to discuss the role of long-lifetime sources such as NSMs and AGB stars at the early stages of galaxy formation, it is necessary to use a model that can treat inhomogeneous chemical enrichment, such as in our chemodynamical simulations. In our cosmological, chemodynamical simulations, we succeed in reproducing the observed N/O-O/H relations both for global properties of galaxies and for local inter-stellar medium within galaxies, without rotation of stars. We also predict the evolution of CNO abundances of disk galaxies, from which it will be possible to constrain the star formation histories.
Radial velocity variability in post-AGB stars: V448 Lac
Authors: Van de Steene G. C. , Hrivnak B. J. , Van Winckel H. 
Published: January 2020

AbstractTo investigate the binary hypothesis in the formation of planetary nebulae, we have been doing long-term photometry and radial velocity (RV) monitoring of bright post-AGB stars which possess bipolar or ellipsoidal nebulae but no indication of a disk in their spectral energy distribution, indicative of a binary companion. RV’s are determined by cross correlating high-resolution spectra with a line mask. Stellar variability and companions both deform the cross correlation function (CCF) and induce periodic variations in the RV. To uniformly quantify the asymmetry of the CCF from a Gaussian, we propose to fit the CCF profile with a Gauss-Hermite series and determine all CCF parameters (RV, skewness, FWHM, and depth) in one single fit. We analyze the correlation and time series of these CCF parameters for V448 Lac and conclude that its RV variability is most likely due to stellar pulsation and not to an orbiting body.
RAMSES II Raman Search for Extragalactic Symbiotic Stars
Authors: Angeloni Rodolfo , Gonçalves Denise R. , Diaz Ruben J. ,   the RAMSES II Team
Published: January 2020

AbstractSymbiotic stars (SySts) are long-period interacting binaries composed of a hot compact star, an evolved giant star, and a tangled network of gas and dust nebulae. Presently, we know 252 SySts in the Milky Way and 62 in external galaxies. However, these numbers are still in striking contrast with the predicted population of SySts in our Galaxy. In this contribution, I present the concept and the early results from RAMSES II (Raman Search for Extragalactic Symbiotic Stars), a Gemini/GMOS Upgrade Project which makes use of the Raman OVI 6830Å band as a powerful photometric tool to identify new SySts, within and beyond the Galaxy.
Planetary Nebulae, Morphology and Binarity, and the relevance to AGB Stars
Authors: Sahai Raghvendra 
Published: January 2020

AbstractThe dramatic transformation of the spherical outflows of AGB stars into the extreme aspherical geometries seen during the planetary nebula (PN) phase is widely believed to be linked to binarity and is likely driven by the associated production of fast jets and central disks/torii. We first briefly summarize results from the imaging surveys of large samples of young PNe and pre-PNe with HST which show that almost all objects have bipolar, multipolar and elliptical morphologies, with widespread presence of point-symmetric structure. We describe a relatively new technique of using UV photometic observations of large AGB star samples to search for binarity and associated accretion activity, and follow-up studies using UV spectroscopy and X-ray observations. We present results from studies of individual objects in transition to the PN phase, highlighting observational techniques being used to determine jet properties that can constrain the accretion modes that power these jets.
Observational Properties of Miras in the KELT Survey
Authors: Arnold R. A. , McSwain M. Virginia , Pepper Joshua , Stassun Keivan G. ,   the KELT Collaboration
Published: January 2020

AbstractWe present a catalog of the observed properties of Mira-type variable stars detected with the Kilodegree Extremely Little Telescope (KELT). Asymptotic giant branch (AGB) candidates were identified in KELT using a combination of photometric data from KELT and 2MASS colors. Of the 4 million objects with KELT photometry, 3332 Mira-like variables were identified. Here, we present their observed periods and luminosities which will place important constraints on future theoretical work on the effect convection has on pulsation periods and mode stability.
Summer Monsoon Rainfall Patterns and Predictability over Southeast China
Authors: Dai Lun , Cheng Tat Fan , Lu Mengqian 
Published: January 2020

AbstractThis study advances the use of the Self‐organizing Map (SOM) to identify the summer monsoon rainfall patterns over Southeast China (SEC), using 272 gauge records from May to August. Three distinct rain belts over the Huai River basin (HRB), the Lower Yangtze River basin (LYRB) and the South Coast region (SCR) are found. Their subseasonal variability strongly agrees with the northward progression of the East Asian Summer Monsoon (EASM) front in a stepwise fashion. We find that precipitation in the SCR and HRB rain belts exhibit significant changes in the mid‐1990s, while the 1990s is the most active decade for the LYRB rain belt. Promising predictability of average daily rainfall over these three regions is obtained, with about 39% to 50% of the total variance explained by the circulation informed regression models. Both leave‐one‐year‐out cross‐validation and blind prediction verify the regression performance. The western North Pacific Subtropical High phases, mid‐latitude blocking high anomaly over northeast China and upper‐level divergence in SEC are found to best explain the variability of the rain belts. The newly proposed Russia‐China wave patterns (western/central Russia → north of Tibetan Plateau → SEC) and teleconnection between the El Niño‐Southern Oscillation and the rain belts also offer additional predictability. Findings from this work may advance the understanding of the EASM rain belts, and offer insights to the source of bias for numerical simulations of daily summer monsoon rainfall in the region.
Inside out: microbiota dynamics during host-plant adaptation of whiteflies
Authors: Santos-Garcia Diego , Mestre-Rincon Natividad , Zchori-Fein Einat , Morin Shai 
Published: January 2020

Abstract
While most insect herbivores are selective feeders, a small proportion of them feed on a wide range of plants. This polyphagous habit requires overcoming a remarkable array of defenses, which often necessitates an adaptation period. Efforts for understanding the mechanisms involved mostly focus on the insect’s phenotypic plasticity. Here, we hypothesized that the adaptation process might partially rely on transient associations with bacteria. To test this, we followed in a field-like experiment, the adaptation process of Bemisia tabaci, a generalist sap feeder, to pepper (a less-suitable host), after switching from watermelon (a suitable host). Amplicon sequencing of 16S rRNA transcripts from hundreds of dissected guts revealed the presence of active “core” and “transient” bacterial communities, dominated by the phyla Proteobacteria, Actinobacteria, and Firmicutes, and increasing differences between populations grown on watermelon and pepper. Insects grown on pepper for over two generations presented a significant increase in specific genera, mainly Mycobacterium, with a predicted enrichment in degradative pathways of xenobiotics and secondary metabolites. This result correlated with a significant increase in the insect’s survival on pepper. Taken together, our findings suggest that gut-associated bacteria can provide an additional flexible metabolic “tool-box” to generalist sap feeders for facilitating a quick host switching process.
The effect of phage genetic diversity on bacterial resistance evolution
Authors: Broniewski Jenny M , Meaden Sean , Paterson Steve , Buckling Angus , Westra Edze R 
Published: January 2020

Abstract
CRISPR-Cas adaptive immune systems are found in bacteria and archaea and provide defence against phage by inserting phage-derived sequences into CRISPR loci on the host genome to provide sequence specific immunological memory against re-infection. Under laboratory conditions the bacterium Pseudomonas aeruginosa readily evolves the high levels of CRISPR-based immunity against clonal populations of its phage DMS3vir, which in turn causes rapid extinction of the phage. However, in nature phage populations are likely to be more genetically diverse, which could theoretically impact the frequency at which CRISPR-based immunity evolves which in turn can alter phage persistence over time. Here we experimentally test these ideas and found that a smaller proportion of infected bacterial populations evolved CRISPR-based immunity against more genetically diverse phage populations, with the majority of the population evolving a sm preventing phage adsorption and providing generalised defence against a broader range of phage genotypes. However, those cells that do evolve CRISPR-based immunity in response to infection with more genetically diverse phage acquire greater numbers of CRISPR memory sequences in order to resist a wider range of phage genotypes. Despite differences in bacterial resistance evolution, the rates of phage extinction were similar in the context of clonal and diverse phage infections suggesting selection for CRISPR-based immunity or sm-based resistance plays a relatively minor role in the ecological dynamics in this study. Collectively, these data help to understand the drivers of CRISPR-based immunity and their consequences for bacteria-phage coexistence, and, more broadly, when generalised defences will be favoured over more specific defences.
Phage-specific metabolic reprogramming of virocells
Authors: Howard-Varona Cristina , Lindback Morgan M , Bastien G Eric , Solonenko Natalie , Zayed Ahmed A , Jang HoBin , Andreopoulos Bill , Brewer Heather M , Glavina del Rio Tijana , Adkins Joshua N , Paul Subhadeep , Sullivan Matthew B , Duhaime Melissa B 
Published: January 2020

Abstract
Ocean viruses are abundant and infect 20–40% of surface microbes. Infected cells, termed virocells, are thus a predominant microbial state. Yet, virocells and their ecosystem impacts are understudied, thus precluding their incorporation into ecosystem models. Here we investigated how unrelated bacterial viruses (phages) reprogram one host into contrasting virocells with different potential ecosystem footprints. We independently infected the marine Pseudoalteromonas bacterium with siphovirus PSA-HS2 and podovirus PSA-HP1. Time-resolved multi-omics unveiled drastically different metabolic reprogramming and resource requirements by each virocell, which were related to phage–host genomic complementarity and viral fitness. Namely, HS2 was more complementary to the host in nucleotides and amino acids, and fitter during infection than HP1. Functionally, HS2 virocells hardly differed from uninfected cells, with minimal host metabolism impacts. HS2 virocells repressed energy-consuming metabolisms, including motility and translation. Contrastingly, HP1 virocells substantially differed from uninfected cells. They repressed host transcription, responded to infection continuously, and drastically reprogrammed resource acquisition, central carbon and energy metabolisms. Ecologically, this work suggests that one cell, infected versus uninfected, can have immensely different metabolisms that affect the ecosystem differently. Finally, we relate phage–host genome complementarity, virocell metabolic reprogramming, and viral fitness in a conceptual model to guide incorporating viruses into ecosystem models.
Symbiont-mediated protection varies with wasp genotype in the Drosophila melanogaster–Spiroplasma interaction
Authors: Jones Jordan Elouise , Hurst Gregory David Douglas 
Published: January 2020

AbstractThe ability of an insect to survive attack by natural enemies can be modulated by the presence of defensive symbionts. Study of aphid–symbiont–enemy interactions has indicated that protection may depend on the interplay of symbiont, host and attacking parasite genotypes. However, the importance of these interactions is poorly understood outside of this model system. Here, we study interactions within a Drosophila model system, in which Spiroplasma protect their host against parasitoid wasps and nematodes. We examine whether the strength of protection conferred by Spiroplasma to its host, Drosophila melanogaster varies with strain of attacking Leptopilina heterotoma wasp. We perform this analysis in the presence and absence of ethanol, an environmental factor that also impacts the outcome of parasitism. We observed that Spiroplasma killed all strains of wasp. However, the protection produced by Spiroplasma following wasp attack depended on wasp strain. A composite measure of protection, including both the chance of the fly surviving attack and the relative fecundity/fertility of the survivors, varied from a <4% positive effect of the symbiont following attack of the fly host by the Lh14 strain of wasp to 21% for the Lh-Fr strain in the absence of ethanol. We also observed that environmental ethanol altered the pattern of protection against wasp strains. These data indicate that the dynamics of the Spiroplasma–Drosophila–wasp tripartite interaction depend upon the genetic diversity within the attacking wasp population, and that prediction of symbiont dynamics in natural systems will thus require analysis across natural enemy genotypes and levels of environmental ethanol.
Ultrafast charge ordering by self-amplified exciton–phonon dynamics in TiSe2
Authors: Lian Chao , Zhang Sheng-Jie , Hu Shi-Qi , Guan Meng-Xue , Meng Sheng 
Published: January 2020

AbstractThe origin of charge density waves (CDWs) in TiSe$${}_{2}$$

2

has long been debated, mainly due to the difficulties in identifying the timescales of the excitonic pairing and electron–phonon coupling (EPC). Without a time-resolved and microscopic mechanism, one has to assume simultaneous appearance of CDW and periodic lattice distortions (PLD). Here, we accomplish a complete separation of ultrafast exciton and PLD dynamics and unravel their interplay in our real-time time-dependent density functional theory simulations. We find that laser pulses knock off the exciton order and induce a homogeneous bonding–antibonding transition in the initial 20 fs, then the weakened electronic order triggers ionic movements antiparallel to the original PLD. The EPC comes into play after the initial 20 fs, and the two processes mutually amplify each other leading to a complete inversion of CDW ordering. The self-amplified dynamics reproduces the evolution of band structures in agreement with photoemission experiments. Hence we resolve the key processes in the initial dynamics of CDWs that help elucidate the underlying mechanism.
Realization of Lieb lattice in covalent-organic frameworks with tunable topology and magnetism
Authors: Cui Bin , Zheng Xingwen , Wang Jianfeng , Liu Desheng , Xie Shijie , Huang Bing 
Published: January 2020

AbstractLieb lattice has been predicted to host various exotic electronic properties due to its unusual Dirac-flat band structure. However, the realization of a Lieb lattice in a real material is still unachievable. Based on tight-binding modeling, we find that the lattice distortion can significantly determine the electronic and topological properties of a Lieb lattice. Importantly, based on first-principles calculations, we predict that the two existing covalent organic frameworks (COFs), i.e., sp2C-COF and sp2N-COF, are actually the first two material realizations of organic-ligand-based Lieb lattice. Interestingly, the sp2C-COF can experience the phase transitions from a paramagnetic state to a ferromagnetic one and then to a Néel antiferromagnetic one, as the carrier doping concentration increases. Our findings not only confirm the first material realization of Lieb lattice in COFs, but also offer a possible way to achieve tunable topology and magnetism in organic lattices.