bluuebunny/crossref_metadata_2025_split huggingface dataset:
Noble gases confirm plume-related mantle degassing beneath Southern Africa
Authors: Gilfillan S. M. V. , Györe D. , Flude S. , Johnson G. , Bond C. E. , Hicks N. , Lister R. , Jones D. G. , Kremer Y. , Haszeldine R. S. , Stuart F. M. 
Published: November 2019

AbstractSouthern Africa is characterised by unusually elevated topography and abnormal heat flow. This can be explained by thermal perturbation of the mantle, but the origin of this is unclear. Geophysics has not detected a thermal anomaly in the upper mantle and there is no geochemical evidence of an asthenosphere mantle contribution to the Cenozoic volcanic record of the region. Here we show that natural CO2 seeps along the Ntlakwe-Bongwan fault within KwaZulu-Natal, South Africa, have C-He isotope systematics that support an origin from degassing mantle melts. Neon isotopes indicate that the melts originate from a deep mantle source that is similar to the mantle plume beneath Réunion, rather than the convecting upper mantle or sub-continental lithosphere. This confirms the existence of the Quathlamba mantle plume and importantly provides the first evidence in support of upwelling deep mantle beneath Southern Africa, helping to explain the regions elevation and abnormal heat flow.
Restructuring of the ‘Macaronesia’ biogeographic unit: A marine multi-taxon biogeographical approach
Authors: Freitas Rui , Romeiras Maria , Silva Luís , Cordeiro Ricardo , Madeira Patrícia , González José Antonio , Wirtz Peter , Falcón Jesús M. , Brito Alberto , Floeter Sergio R. , Afonso Pedro , Porteiro Filipe , Viera-Rodríguez María Ascensión , Neto Ana Isabel , Haroun Ricardo , Farminhão João N. M. , Rebelo Ana Cristina , Baptista Lara , Melo Carlos S. , Martínez Alejandro , Núñez Jorge , Berning Björn , Johnson Markes E. , Ávila Sérgio P. 
Published: November 2019

AbstractThe Azores, Madeira, Selvagens, Canary Islands and Cabo Verde are commonly united under the term “Macaronesia”. This study investigates the coherency and validity of Macaronesia as a biogeographic unit using six marine groups with very different dispersal abilities: coastal fishes, echinoderms, gastropod molluscs, brachyuran decapod crustaceans, polychaete annelids, and macroalgae. We found no support for the current concept of Macaronesia as a coherent marine biogeographic unit. All marine groups studied suggest the exclusion of Cabo Verde from the remaining Macaronesian archipelagos and thus, Cabo Verde should be given the status of a biogeographic subprovince within the West African Transition province. We propose to redefine the Lusitanian biogeographical province, in which we include four ecoregions: the South European Atlantic Shelf, the Saharan Upwelling, the Azores, and a new ecoregion herein named Webbnesia, which comprises the archipelagos of Madeira, Selvagens and the Canary Islands.
Human oocytes and zygotes are ready for ultra-fast vitrification after 2 minutes of exposure to standard CPA solutions
Authors: Gallardo Miguel , Saenz Jaime , Risco Ramon 
Published: November 2019

AbstractVitrification of human oocytes and embryos in different stages of development is a key element of daily clinical practice of in vitro fertilization treatments. Despite the cooling and warming of the cells is ultra-fast, the procedure as a whole is time consuming. Most of the duration is employed in a long (8–15 minutes), gradual or direct exposure to a non-vitrifying cryoprotectant solution, which is followed by a short exposure to a more concentrated vitrifying solution. A reduction in the duration of the protocols is desirable to improve the workflow in the IVF setting and reduce the time of exposure to suboptimal temperature and osmolarity, as well as potentially toxic cryoprotectants. In this work it is shown that this reduction is feasible. In silico (MatLab program using two-parameter permeability model) and in vitro observations of the oocytes’ osmotic behaviour indicate that the dehydration upon exposure to standard cryoprotectant solutions occurs very fast: the point of minimum volume of the shrink-swell curve is reached within 60 seconds. At that point, intracellular water ejection is complete, which coupled with the permeation of low molecular weight cryoprotectants results in similar intracellular and extracellular solute concentrations. This shows that prolonging the exposure to the cryoprotectant solutions does not improve the cytosolic glass forming tendency and could be avoided. To test this finding, human oocytes and zygotes that were donated for research were subjected to a shortened, dehydration-based protocol, consisting of two consecutive exposures of one-minute to two standard cryoprotectant solutions, containing ethylene glycol, dimethyl sulfoxide and sucrose. At the end of this two-minute dehydration protocol, the critical intracellular solute concentration necessary for successful vitrification was attained, confirmed by the post-warming survival and ability to resume cytokinesis of the cells. Further studies of the developmental competency of oocytes and embryos would be necessary to determine the suitability of this specific dehydration protocol for clinical practice, but based on our results, short times of exposure to increasingly hypertonic solutions could be a more time-efficient strategy to prepare human oocytes and embryos for vitrification.
Synthesis of new isoquinoline-base-oxadiazole derivatives as potent inhibitors of thymidine phosphorylase and molecular docking study
Authors: Zaman Khalid , Rahim Fazal , Taha Muhammad , Wadood Abdul , Shah Syed Adnan Ali , Ahmed Qamar Uddin , Zakaria Zainul Amiruddin 
Published: November 2019

AbstractHere in this study regarding the over expression of TP, which causes some physical, mental and socio problems like psoriasis, chronic inflammatory disease, tumor angiogenesis and rheumatoid arthritis etc. By this consideration, the inhibition of this enzyme is vital to secure life from serious threats. In connection with this, we have synthesized twenty derivatives of isoquinoline bearing oxadiazole (1–20), characterized through different spectroscopic techniques such as HREI-MS, 1H- NMR and 13C-NMR and evaluated for thymidine phosphorylase inhibition. All analogues showed outstanding inhibitory potential ranging in between 1.10 ± 0.05 to 54.60 ± 1.50 µM. 7-Deazaxanthine (IC50 = 38.68 ± 1.12 µM) was used as a positive control. Through limited structure activity relationships study, it has been observed that the difference in inhibitory activities of screened analogs are mainly affected by different substitutions on phenyl ring. The effective binding interactions of the most active analogs were confirmed through docking study.
Formation of a photocatalytic WO3 surface layer on electrodeposited Al–W alloy coatings by selective dissolution and heat treatment
Authors: Higashino Shota , Miyake Masao , Ikenoue Takumi , Hirato Tetsuji 
Published: November 2019

AbstractIn this study, we explored the feasibility of WO3 surface layer formation on electrodeposited Al–W alloy coatings by selective dissolution and heat treatment, with the aim of providing corrosion-resistant Al–W alloy coatings with photocatalytic self-cleaning properties under visible light illumination. The selective dissolution of Al and oxidation of residual W was carried out by immersing Al–W alloy films in an aqueous solution of nitric acid. A nanostructured H2WO4·H2O surface layer was formed on the alloy film by this process. The H2WO4·H2O layer was dehydrated to WO3 by heat treatment, yielding a multilayered WO3/Al–W alloy film with an approximately 300 nm thick WO3 layer. The WO3/Al–W alloy film exhibited photocatalytic self-cleaning, as demonstrated by the photodegradation of stearic acid and methylene blue. We also confirmed that selective dissolution and heat treatment did not significantly diminish the corrosion resistance of the Al–W alloy films.
Road related pollutants induced DNA damage in dragonfly nymphs (Odonata, Anisoptera) living in highway sedimentation ponds
Authors: Meland Sondre , Gomes Tânia , Petersen Karina , Håll Johnny , Lund Espen , Kringstad Alfhild , Grung Merete 
Published: November 2019

AbstractNowadays, stormwater sedimentation ponds are popular in stormwater management because of their ability to mitigate flooding and treat polluted runoff from e.g. roads. In addition, they may provide other ecosystem services such as biodiversity. These man-made habitats will inevitably be polluted and the organisms living therein may be negatively affected by the chemical cocktail present in both the water and sediment compartments. The present study explored DNA damage in dragonfly nymphs (Odonata, Anisoptera) living in highway sedimentation ponds in comparison with natural ponds. The concentrations of Polycyclic aromatic hydrocarbons (PAHs), alkylated PAHs and metals were also determined in sediment samples from the different ponds. The results showed that DNA damage was significantly higher in dragonfly nymphs living in sedimentation ponds compared to nymphs living in natural ponds. DNA damage was also highly and significantly correlated with the pollution levels in the sediment, i.e., PAH and Zinc. Finally, we report the concentrations of various alkylated PAHs which appeared to be very dominant in the sedimentation ponds. Our results show that there may be a conflict between the sedimentation ponds’ primary function of protecting natural water bodies from polluted runoff and their secondary function as habitats for organisms. Overall, we suggest that this must be considered when planning and designing stormwater measures.
Gamma Attenuation Coefficients of Nano Cadmium Oxide/High density Polyethylene Composites
Authors: El-Khatib Ahmed M. , Abbas Mahmoud I. , Elzaher Mohamed Abd , Badawi Mohamed S. , Alabsy Mahmoud T. , Alharshan Gharam A. , Aloraini Dalal A. 
Published: November 2019

AbstractIn the present work, high density polyethylene (HDPE) matrix mixed with micro-sized and nano-sized Cadmium oxide (CdO) particles of different concentrations were prepared by compression molding technique. The aim of the study is to investigate the effect of particle size and weight percentage of CdO particles on the gamma radiation shielding ability of CdO/HDPE composites. The mass attenuation coefficients of pure HDPE, micro-CdO/HDPE and nano-CdO/HDPE composites were evaluated at photon energies ranging from 59.53 keV to 1408.01 keV using standard radioactive point sources [241Am, 133Ba, 137Cs, 60Co and 152Eu]. Adding micro and nano CdO particles to the HDPE matrix clearly increases the mass attenuation coefficients of the composites and the improvement is more significant at low γ-ray energies. The effect of particle size of CdO filler has an important role on the shielding ability of the composite. The experimental results reveal that, the composites filled with nano-CdO have better γ-radiation shielding ability compared to that filled with micro-CdO at the same weight fraction. A relative increase rate of about 16% is obtained with nano-CdO content of 40 wt% at 59.53 keV, which attributed to the higher probability of interaction between γ-rays and nanoparticles. From this study, it can be concluded that nano-CdO has a good performance shielding characteristic than micro-CdO in HDPE based radiation shielding material.
Exciton Absorption and Luminescence in i-Motif DNA
Authors: Reveguk Zakhar V. , Khoroshilov Evgeny V. , Sharkov Andrey. V. , Pomogaev Vladimir A. , Buglak Andrey A. , Tarnovsky Alexander N. , Kononov Alexei I. 
Published: November 2019

AbstractWe have studied the excited-state dynamics for the i-motif form of cytosine chains (dC)10, using the ultrafast fluorescence up-conversion technique. We have also calculated vertical electronic transition energies and determined the nature of the corresponding excited states in a model tetramer i-motif structure. Quantum chemical calculations of the excitation spectrum of a tetramer i-motif structure predict a significant (0.3 eV) red shift of the lowest-energy transition in the i-motif form relative to its absorption maximum, which agrees with the experimental absorption spectrum. The lowest excitonic state in i-(dC)10 is responsible for a 2 ps red-shifted emission at 370 nm observed in the decay-associated spectra obtained on the femtosecond time-scale. This delocalized (excitonic) excited state is likely a precursor to a long-lived excimer state observed in previous studies. Another fast 310 fs component at 330 nm is assigned to a monomer-like locally excited state. Both emissive states form within less than the available time resolution of the instrument (100 fs). This work contributes to the understanding of excited-state dynamics of DNA within the first few picoseconds, which is the most interesting time range with respect to unraveling the photodamage mechanism, including the formation of the most dangerous DNA lesions such as cyclobutane pyrimidine dimers.
Cowpea (Vigna unguiculata (L.) Walp) for food security: an evaluation of end-user traits of improved varieties in Swaziland
Authors: Gondwe Therese Mwatitha , Alamu Emmanuel Oladeji , Mdziniso Phumzile , Maziya-Dixon Busie 
Published: November 2019

Abstract Improved varieties have agronomic advantages over local varieties,but not much attention has been given to understand the nutritional content of the improved cowpea varieties released in Swaziland. This study investigated the physical and nutritional properties of improved cowpea varieties released in Swaziland. Five improved varieties (IT-04K-321-2, IT-97K-390-2, IT-18, IT-16, and IT-99K-494-6) and one local variety (Mtilane, as check) were analyzed for physical and chemical properties. The results showed that there were variations in seed weight as the values ranged between 12.5 and 18.5 g per 100 g seed weight. The protein content ranged from 25.38% to 27.56% with no significant difference (P < 0.05) between the improved varieties and the local variety, ash content ranged between 3.47 and 6.84%, crude fiber was between 5.81 and 15.08%, and carbohydrate ranged from 45.64 to 57.12%. Contents of calcium ranged from 9 to 36 mg/100 g and of iron from 2.0 to 2.4 mg/kg, with significant differences (P  < 0.05) between the varieties with highest and the lowest values. Zinc content ranged from 7 mg/kg to 8 mg/kg, with no significant difference (P >0.05) among the varieties. The improved varieties have high seed weight, which is an essential factor that farmers consider when choosing a variety to adopt. In terms of addressing nutritional security, the crop is suitable for addressing protein-energy malnutrition and formulating blends for baby foods in Swaziland.
A Novel Semiconductor-Based Flow Cytometer with Enhanced Light-Scatter Sensitivity for the Analysis of Biological Nanoparticles
Authors: Brittain George C. , Chen Yong Q. , Martinez Edgar , Tang Vera A. , Renner Tyler M. , Langlois Marc-André , Gulnik Sergei 
Published: November 2019

AbstractThe CytoFLEX is a novel semiconductor-based flow cytometer that utilizes avalanche photodiodes, wavelength-division multiplexing, enhanced optics, and diode lasers to maximize light capture and minimize optical and electronic noise. Due to an increasing interest in the use of extracellular vesicles (EVs) as disease biomarkers, and the growing desire to use flow cytometry for the analyses of biological nanoparticles, we assessed the light-scatter sensitivity of the CytoFLEX for small-particle detection. We found that the CytoFLEX can fully resolve 70 nm polystyrene and 98.6 nm silica beads by violet side scatter (VSSC). We further analyzed the detection limit for biological nanoparticles, including viruses and EVs, and show that the CytoFLEX can detect viruses down to 81 nm and EVs at least as small as 65 nm. Moreover, we could immunophenotype EV surface antigens, including directly in blood and plasma, demonstrating the double labeling of platelet EVs with CD61 and CD9, as well as triple labeling with CD81 for an EV subpopulation in one donor. In order to assess the refractive indices (RIs) of the viruses and EVs, we devised a new method to inversely calculate the RIs using the intensity vs. size data together with Mie-theory scatter efficiencies scaled to reference-particle measurements. Each of the viruses tested had an equivalent RI, approximately 1.47 at 405 nm, which suggests that flow cytometry can be more broadly used to easily determine virus sizes. We also found that the RIs of EVs increase as the particle diameters decrease below 150 nm, increasing from 1.37 for 200 nm EVs up to 1.61 for 65 nm EVs, expanding the lower range of EVs that can be detected by light scatter. Overall, we demonstrate that the CytoFLEX has an unprecedented level of sensitivity compared to conventional flow cytometers. Accordingly, the CytoFLEX can be of great benefit to virology and EV research, and will help to expand the use of flow cytometry for minimally invasive liquid biopsies by allowing for the direct analysis of antigen expression on biological nanoparticles within patient samples, including blood, plasma, urine and bronchoalveolar lavages.
Satellite-based monitoring of groundwater depletion in California’s Central Valley
Authors: Vasco Donald W. , Farr Tom G. , Jeanne Pierre , Doughty Christine , Nico Peter 
Published: November 2019

AbstractRange change data, obtained from Synthetic Aperture Radar satellites, form the basis for estimates of aquifer volume change in California’s Central Valley. The estimation algorithm incorporates a function penalizing changes far from known well locations, linking the aquifer volume changes to agricultural, industrial, and municipal pumping within the Tulare basin. We show that the range changes are compatible with the hypothesis that the source of aquifer volume changes are variations in effective pressure around documented wells. Specifically, inclusion of the well distance penalty does not degrade the fit to the observations, inversions with and without it both give variance reductions of 99.6%. The patterns of aquifer volume change vary significantly from the drought year, between October 2015 and October 2016, to a wet year in 2017, and into 2018, a year with near average rainfall. The 2.3 million acre-feet of estimated volume reduction, a lower bound on the amount of water extracted from the basin between October 2015 and 2016, agrees with independent estimates of 1.8 and 2.3 million acre-feet. The aquifer volume reduction is also compatible with a loss of 3.1 km3 (2.5 million acre-feet) in groundwater volume derived from Gravity Recovery and Climate Experiment (GRACE) satellite data.
Efficient Degradation of Poly(ethylene terephthalate) with Thermobifida fusca Cutinase Exhibiting Improved Catalytic Activity Generated using Mutagenesis and Additive-based Approaches
Authors: Furukawa Makoto , Kawakami Norifumi , Tomizawa Atsushi , Miyamoto Kenji 
Published: November 2019

AbstractCutinases are promising agents for poly(ethylene terephthalate) (PET) bio-recycling because of their ability to produce the PET monomer terephthalic acid with high efficiency under mild reaction conditions. In this study, we found that the low-crystallinity PET (lcPET) hydrolysis activity of thermostable cutinase from Thermobifida fusca (TfCut2), was increased by the addition of cationic surfactant that attracts enzymes near the lcPET film surface via electrostatic interactions. This approach was applicable to the mutant TfCut2 G62A/F209A, which was designed based on a sequence comparison with PETase from Ideonella sakaiensis. As a result, the degradation rate of the mutant in the presence of cationic surfactant increased to 31 ± 0.1 nmol min−1 cm−2, 12.7 times higher than that of wild-type TfCut2 in the absence of surfactant. The long-duration reaction showed that lcPET film (200 μm) was 97 ± 1.8% within 30 h, the fastest biodegradation rate of lcPET film thus far. We therefore believe that our approach would expand the possibility of enzyme utilization in industrial PET biodegradation.
Statistical Evolutionary Laws in Music Styles
Authors: Nakamura Eita , Kaneko Kunihiko 
Published: November 2019

AbstractIf a cultural feature is transmitted over generations and exposed to stochastic selection when spreading in a population, its evolution may be governed by statistical laws and be partly predictable, as in the case of genetic evolution. Music exhibits steady changes of styles over time, with new characteristics developing from traditions. Recent studies have found trends in the evolution of music styles, but little is known about their relations to the evolution theory. Here we analyze Western classical music data and find statistical evolutionary laws. For example, distributions of the frequencies of some rare musical events (e.g. dissonant intervals) exhibit steady increase in the mean and standard deviation as well as constancy of their ratio. We then study an evolutionary model where creators learn their data-generation models from past data and generate new data that will be socially selected by evaluators according to the content dissimilarity (novelty) and style conformity (typicality) with respect to the past data. The model reproduces the observed statistical laws and can make non-trivial predictions for the evolution of independent musical features. In addition, the same model with different parameterization can predict the evolution of Japanese enka music, which is developed in a different society and has a qualitatively different tendency of evolution. Our results suggest that the evolution of musical styles can partly be explained and predicted by the evolutionary model incorporating statistical learning, which can be important for other cultures and future music technologies.
Repeated long-distance dispersal and convergent evolution in hazel
Authors: Helmstetter Andrew J. , Buggs Richard J. A. , Lucas Stuart J. 
Published: November 2019

AbstractClosely related species with a worldwide distribution provide an opportunity to understand evolutionary and biogeographic processes at a global scale. Hazel (Corylus) is an economically important genus of tree and shrub species found in temperate regions of Asia, North America and Europe. Here we use multiple nuclear and chloroplast loci to estimate a time-calibrated phylogenetic tree of the genus Corylus. We model the biogeographic history of this group and the evolutionary history of tree and shrub form. We estimate that multiple Corylus lineages dispersed long distances between Europe and Asia and colonised North America from Asia in multiple independent events. The geographic distribution of tree versus shrub form of species appears to be the result of 4–5 instances of convergent evolution in the past 25 million years. We find extensive discordance between our nuclear and chloroplast trees and potential evidence for chloroplast capture in species with overlapping ranges, suggestive of past introgression. The important crop species C. avellana is estimated to be closely related to C. maxima, C. heterophylla var. thunbergii and the Colurnae subsection. Our study provides a new phylogenetic hypothesis or Corylus and reveals how long-distance dispersal can shape the distribution of biodiversity in temperate plants.