bluuebunny/crossref_metadata_2025_split huggingface dataset:
Carbon and Calcium Carbonate Export Driven by Appendicularian Faecal Pellets in the Humboldt Current System off Chile
Authors: Eduardo Menschel A. , González Humberto E. 
Published: November 2019

AbstractThe role of appendicularian faecal pellet (FPa) size fractions on coccolithophore-derived particulate organic carbon (POC) and calcium carbonate (CaCO3) export to the deep sea was assessed from sediment traps within a period of ten years (1995–2004) off Coquimbo (CQ, 30°S) and five years (2005–2009) off Concepción (CC, 36°S) in the Humboldt Current System (HCS) off Chile. The composition and size distribution of 1,135 FPa samples from sediment traps deployed at 2,300 and 1,000 m depths showed non-linear, inverse relationships between the FPa size-fractions and their volume-specific POC and CaCO3 contents, which were up to ten times higher for small (<100 µm in diameter) than large (>100 µm) FPa. On average, 13 and 2% of the total POC and CaCO3 fluxes, respectively, were contributed mainly by small FPa (90%), with maxima during the autumn and summer. Thus, a non-linear, exponential model of volume-specific POC and CaCO3 contents of FPa substantially improved vertical flux rate estimates. In the HCS, annual carbon flux based on a non-linear FPa carbon load was double the estimate assuming a linear-volume to carbon load for FPa (345 and 172 kton C y−1). We recommend a widespread consideration of this non-linear model in global carbon estimates.
Interference between the glass, gel, and gas-liquid transitions
Authors: Olais-Govea José Manuel , López-Flores Leticia , Zepeda-López Jesús Benigno , Medina-Noyola Magdaleno 
Published: November 2019

AbstractRecent experiments and computer simulations have revealed intriguing phenomenological fingerprints of the interference between the ordinary equilibrium gas-liquid phase transition and the non-equilibrium glass and gel transitions. We thus now know, for example, that the liquid-gas spinodal line and the glass transition loci intersect at a finite temperature and density, that when the gel and the glass transitions meet, mechanisms for multistep relaxation emerge, and that the formation of gels exhibits puzzling latency effects. In this work we demonstrate that the kinetic perspective of the non-equilibrium self-consistent generalized Langevin equation (NE-SCGLE) theory of irreversible processes in liquids provides a unifying first-principles microscopic theoretical framework to describe these and other phenomena associated with spinodal decomposition, gelation, glass transition, and their combinations. The resulting scenario is in reality the competition between two kinetically limiting behaviors, associated with the two distinct dynamic arrest transitions in which the liquid-glass line is predicted to bifurcate at low densities, below its intersection with the spinodal line.
Postmenopausal Osteoporosis reference genes for qPCR expression assays
Authors: de Lima Camilla Albertina Dantas , de Lima Suelen Cristina , Barbosa Alexandre Domingues , Sandrin-Garcia Paula , de Barros Pita Will , de Azevêdo Silva Jaqueline , Crovella Sergio 
Published: November 2019

AbstractOsteoporosis (OP) is a multifactorial disease influenced by genetic factors in more than half of the cases. In spite of the efforts to clarify the relationship among genetic factors and susceptibility to develop OP, many genetic associations need to be further functionally validated. Besides, some limitations as the choice of stably expressed reference genes (RG) should be overcome to ensure the quality and reproducibility of gene expression assays. To our knowledge, a validation study for RG in OP is still missing. We compared the expression levels, using polymerase chain reaction quantitative real time (qPCR) of 10 RG (G6PD, B2M, GUSB, HSP90, EF1A, RPLP0, GAPDH, ACTB, 18 S and HPRT1) to assess their suitability in OP analysis by using GeNorm, Normfinder, BestKeeper and RefFinder programs. A minimal number of two RG was recommended by GeNorm to obtain a reliable normalization. RPLP0 and B2M were identified as the most stable genes in OP studies while ACTB, 18 S and HPRT1 were inadequate for normalization in our data set. Moreover, we showed the dramatic effects of suboptimal RG choice on the quantification of a target gene, highlighting the importance in the identification of the most appropriate reference gene to specific diseases. We suggest the use of RPLP0 and B2M as the most stable reference genes while we do not recommend the use of the least stable reference genes HPRT1, 18 S and ACTB in OP expression assays using PBMC as biological source. Additionally, we emphasize the importance of individualized and careful choice in software and reference genes selection.
Early stimulation of the left posterior parietal cortex promotes representation change in problem solving
Authors: Debarnot Ursula , Schlatter Sophie , Monteil Julien , Guillot Aymeric 
Published: November 2019

AbstractWhen you suddenly understand how to solve a problem through an original and efficient strategy, you experience the so-called “Eureka” effect. The appearance of insight usually occurs after setting the problem aside for a brief period of time (i.e. incubation), thereby promoting unconscious and novel associations on problem-related representations leading to a new and efficient solving strategy. The left posterior parietal cortex (lPPC) has been showed to support insight in problem solving, when this region is activated during the initial representations of the task. The PPC is further activated during the next incubation period when the mind starts to wander. The aim of this study was to investigate whether stimulating the lPPC, either during the initial training on the problem or the incubation period, might enhance representation change in problem solving. To address this question, participants performed the Number Reduction Task (NRT, convergent problem-solving), while excitatory or sham (placebo) transcranial direct current stimulation (tDCS) was applied over the lPPC. The stimulation was delivered either during the initial problem representation or during the subsequent incubation period. Impressively, almost all participants (94%) with excitatory tDCS during the initial training gained representational change in problem solving, compared to only 39% in the incubation period and 33% in the sham groups. We conclude that the lPPC plays a role during the initial problem representation, which may be considerably strengthened by means of short brain stimulation.
The potential for using smartphones as portable soil nutrient analyzers on suburban farms in central East China
Authors: Golicz Karolina , Hallett Stephen H. , Sakrabani Ruben , Pan Genxing 
Published: November 2019

AbstractSoil testing is frequently conducted to specify nutrient supply recommendations. By adjusting fertilizer type and application rates, farmers can achieve desired crop yields with lower production costs and are thereby less likely to contribute to eutrophication of nearby waterbodies. However, traditional methods of soil testing can be costly, time-consuming and are often impractical in rural and resource-poor regions in China, where rapid population growth and consequent food demand must be balanced against potential environment risks. Smartphones are nearly ubiquitous and offer a ready capability for providing additional support for existing extension advice. In this study, we used an Android-based smartphone application, in conjunction with commercially-available Quantofix test strips, to analyze soil samples with a goal of providing specific fertilizer recommendations. The app transforms the smartphone into a portable reflectometer, relating the reaction color of the test strips to the concentration of soil nutrients available. A 6-month long field study involving two growing seasons of vegetables was conducted in a suburban area of Nanjing, Jiangsu Province of China to evaluate the accuracy and precision of smartphone-mediated soil analysis. Results obtained via the smartphone correlated well with the yield response of the common green vegetable Ipomoea aquatica (water spinach) and could be applied in calculations of necessary off-farm inputs throughout the open-field vegetable growing season. Together, the smartphone and test strip in combination were shown to offer an acceptable screening tool for soil nutrient concentration assessment with the potential to result in substantial monetary savings and reduction of nutrient loss to the environment.
Autonomic adaptations mediate the effect of hydration on brain functioning and mood: Evidence from two randomized controlled trials
Authors: Young Hayley A. , Cousins Alecia , Johnston Stephen , Fletcher John M. , Benton David 
Published: November 2019

AbstractDehydration (water loss >2.0% of body weight) has significant negative effects on physical and mental performance. In two studies the effects of minor hypo-hydration (water loss <1.0% of body weight) on CNS function, mood and cardiovascular functioning were measured. Study 1: On two mornings twelve male participants were exposed to a temperature of 30 °C for four hours and either did or did not drink two 150 ml glasses of water during that time. Study 2: Fifty-six (25 M) individuals were exposed to the same 30 °C environment and randomly allocated to either drink (2 × 150 ml) or not drink. When not given water 0.59% (Study 1) and 0.55% (Study 2) bodyweight was lost. Participant’s heart rate variability (HRV) was measured, and they rated their thirst and mood. In study 1, participants participated in an fMRI protocol during which they completed a modified version of the Paced Auditory Serial Addition Test (PASAT), at the end of which they rated its difficulty. Decreases in fMRI BOLD activity in the orbito-frontal cortex, ventral cingulate gyrus, dorsal cingulate cortex, hypothalamus, amygdala, right striatum, post-central gyrus and superior parietal cortex were observed when participants were hypo-hydrated. These deactivations were associated with reduced HRV, greater perceived effort, and more anxiety. In study 2 declines in HRV were found to mediate the effect of hypo-hydration on ratings of anxiety. These data are discussed in relation to a model that describes how autonomic regulatory and interoceptive processes may contribute to the affective consequences of minor hypo-hydration.
Impact of bacteria motility in the encounter rates with bacteriophage in mucus
Authors: Joiner Kevin L. , Baljon Arlette , Barr Jeremy , Rohwer Forest , Luque Antoni 
Published: November 2019

AbstractBacteriophages—or phages—are viruses that infect bacteria and are present in large concentrations in the mucosa that cover the internal organs of animals. Immunoglobulin (Ig) domains on the phage surface interact with mucin molecules, and this has been attributed to an increase in the encounter rates of phage with bacteria in mucus. However, the physical mechanism behind this phenomenon remains unclear. A continuous time random walk (CTRW) model simulating the diffusion due to mucin-T4 phage interactions was developed and calibrated to empirical data. A Langevin stochastic method for Escherichia coli (E. coli) run-and-tumble motility was combined with the phage CTRW model to describe phage-bacteria encounter rates in mucus for different mucus concentrations. Contrary to previous theoretical analyses, the emergent subdiffusion of T4 in mucus did not enhance the encounter rate of T4 against bacteria. Instead, for static E. coli, the diffusive T4 mutant lacking Ig domains outperformed the subdiffusive T4 wild type. E. coli’s motility dominated the encounter rates with both phage types in mucus. It is proposed, that the local fluid-flow generated by E. coli’s motility combined with T4 interacting with mucins may be the mechanism for increasing the encounter rates between the T4 phage and E. coli bacteria.
Multifactorial motor behavior assessment for real-time evaluation of emerging therapeutics to treat neurologic impairments
Authors: Islam Riazul , Cuellar Carlos A. , Felmlee Ben , Riccelli Tori , Silvernail Jodi , Boschen Suelen Lucio , Grahn Peter , Lavrov Igor 
Published: November 2019

AbstractIntegrating multiple assessment parameters of motor behavior is critical for understanding neural activity dynamics during motor control in both intact and dysfunctional nervous systems. Here, we described a novel approach (termed Multifactorial Behavioral Assessment (MfBA)) to integrate, in real-time, electrophysiological and biomechanical properties of rodent spinal sensorimotor network activity with behavioral aspects of motor task performance. Specifically, the MfBA simultaneously records limb kinematics, multi-directional forces and electrophysiological metrics, such as high-fidelity chronic intramuscular electromyography synchronized in time to spinal stimulation in order to characterize spinal cord functional motor evoked potentials (fMEPs). Additionally, we designed the MfBA to incorporate a body weight support system to allow bipedal and quadrupedal stepping on a treadmill and in an open field environment to assess function in rodent models of neurologic disorders that impact motor activity. This novel approach was validated using, a neurologically intact cohort, a cohort with unilateral Parkinsonian motor deficits due to midbrain lesioning, and a cohort with complete hind limb paralysis due to T8 spinal cord transection. In the SCI cohort, lumbosacral epidural electrical stimulation (EES) was applied, with and without administration of the serotonergic agonist Quipazine, to enable hind limb motor functions following paralysis. The results presented herein demonstrate the MfBA is capable of integrating multiple metrics of motor activity in order to characterize relationships between EES inputs that modulate mono- and polysynaptic outputs from spinal circuitry which in turn, can be used to elucidate underlying electrophysiologic mechanisms of motor behavior. These results also demonstrate that proposed MfBA is an effective tool to integrate biomechanical and electrophysiology metrics, synchronized to therapeutic inputs such as EES or pharmacology, during body weight supported treadmill or open field motor activities, to target a high range of variations in motor behavior as a result of neurological deficit at the different levels of CNS.
High ellipticity reduces semi-circular canal sensitivity in squamates compared to mammals
Authors: Goyens Jana 
Published: November 2019

AbstractThe semi-circular canals in the inner ear sense head rotations. It is widely recognised that the anatomy of the semi-circular canals is often adapted to the species-specific agility, in order to provide the necessary sensitivity. Based on research on mammals, the ellipticity of the semi-circular canal was so far considered as a non-important factor herein. A dataset of 125 squamate species and 156 mammalian species, now shows that the posterior semi-circular canal of squamates is much more elliptical (eccentricities ranging between 0.76 and 0.94) than that of mammals (eccentricities ranging between 0 and 0.71). Fluid-Structure Interaction computer models show that the effect of the ellipticity on sensitivity is strongest in small semi-circular canals. This new insight indicates that the high ellipticity in squamates leads to a severe reduction in sensitivity of up to 45%. In mammals, on the other hand, the reduction in sensitivity is limited to 13%, which is consistent with previous literature that found a limited effect of semi-circular canal ellipticity in mammals. Further, there is a strongly negative correlation between semi-circular canal size and eccentricity in squamates, which is absent in mammals. Hence, the smallest squamates have the most elliptical semi-circular canals. In general, the smaller the semi-circular canal, the less sensitive it is. Therefore, the highly elliptical squamate canals are probably the result of fitting the largest possible canal in small and flat head. Miniaturising the canals while maintaining a circular shape would reduce the sensitivity by another 73% compared to the highly elliptical canals.
ERICH3 in Primary Cilia Regulates Cilium Formation and the Localisations of Ciliary Transport and Sonic Hedgehog Signaling Proteins
Authors: Alsolami Mona , Kuhns Stefanie , Alsulami Manal , Blacque Oliver E. 
Published: November 2019

AbstractIntraflagellar transport (IFT) is essential for the formation and function of the microtubule-based primary cilium, which acts as a sensory and signalling device at the cell surface. Consisting of IFT-A/B and BBSome cargo adaptors that associate with molecular motors, IFT transports protein into (anterograde IFT) and out of (retrograde IFT) the cilium. In this study, we identify the mostly uncharacterised ERICH3 protein as a component of the mammalian primary cilium. Loss of ERICH3 causes abnormally short cilia and results in the accumulation of IFT-A/B proteins at the ciliary tip, together with reduced ciliary levels of retrograde transport regulators, ARL13B, INPP5E and BBS5. We also show that ERICH3 ciliary localisations require ARL13B and BBSome components. Finally, ERICH3 loss causes positive (Smoothened) and negative (GPR161) regulators of sonic hedgehog signaling (Shh) to accumulate at abnormally high levels in the cilia of pathway-stimulated cells. Together, these findings identify ERICH3 as a novel component of the primary cilium that regulates cilium length and the ciliary levels of Shh signaling molecules. We propose that ERICH3 functions within retrograde IFT-associated pathways to remove signaling proteins from cilia.
The Resistome, Mobilome, Virulome and Phylogenomics of Multidrug-Resistant Escherichia coli Clinical Isolates from Pretoria, South Africa
Authors: Mbelle Nontombi Marylucy , Feldman Charles , Osei Sekyere John , Maningi Nontuthuko Excellent , Modipane Lesedi , Essack Sabiha Yusuf 
Published: November 2019

AbstractAntibiotic-resistantEscherichia coliis a common occurrence in food, clinical, community and environmental settings worldwide. The resistome, mobilome, virulome and phylogenomics of 20 multidrug resistant (MDR) clinicalE. coliisolates collected in 2013 from Pretoria, South Africa, were characterised. The isolates were all extended-spectrum β-lactamase producers, harbouring CTX-M (n = 16; 80%), TEM-1B (n = 10; 50%) and OXA (n = 12, 60%) β-lactamases alongside genes mediating resistance to fluoroquinolones, aminoglycosides, tetracyclines etc. Most resistance determinants were found on contigs containing IncF plasmid replicons and bracketed by composite transposons (Tn3), diverse ISs and class 1 integrons (In13, In54, In369, and In467). Gene cassettes such asblaOXA,dfrA5-psp-aadA2-cmlA1a-aadA1-qacandestX3-psp-aadA2-cmlA1a-aadA1a-qacwere encompassed by Tn3and ISs; several isolates had same or highly similar genomic antibiotic resistance islands. ST131 (n = 10), ST617 (n = 2) and singletons of ST10, ST73, ST95, ST410, ST648, ST665, ST744 and ST998 clones were phylogenetically related to clinical (human and animal) strains from Egypt, Kenya, Niger, Nigeria, Tanzania, and UK. A rich repertoire of virulence genes, includingiss, gad and ihawere identified. MDRE. coliharbouring chromosomal and plasmid-borne resistance genes in same and multiple clones exist in South Africa, which is very worrying for clinical epidemiology and infectious diseases management.
Halszkaraptor escuilliei and the evolution of the paravian bauplan
Authors: Brownstein Chase D. 
Published: November 2019

AbstractThe evolution of birds from dinosaurs is a subject that has received great attention among vertebrate paleontologists. Nevertheless, the early evolution of the paravians, the group that contains birds and their closest non-avian dinosaur relatives, remains very poorly known. Even the most basal members of one paravian lineage, the Dromaeosauridae, already show a body plan that differs substantially from their closest non-paravian relatives. Recently, the dromaeosauridHalszkaraptor escuillieiwas described from the Cretaceous of Mongolia.Halszkaraptorpossesses numerous unserrated premaxillary teeth, a platyrostral rostrum with a developed neurovascular system, an elongate neck, bizarrely-proportioned forearms, and a foreword-shifted center of mass, differing markedly from other paravians. A reevaluation of the anatomy, taphonomy, environmental setting, and phylogenetic position ofH.escuillieibased on additional comparisons with other maniraptorans suggests that, rather than indicating it was a semiaquatic piscivore, the body plan of this dinosaur bears features widely distributed among maniraptorans and in some cases intermediate between the conditions in dromaeosaurids and related clades. I find no evidence for a semiaquatic lifestyle inHalszkaraptor. A phylogenetic reevaluation of Halszkaraptorinae places it as the sister clade to Unenlagiinae, indicating the bizarre features of unenlagiines previously interpreted as evidence of piscivory may also represent a mosaic of plesiomorphic, derived, and intermediate features. The anatomy ofHalszkaraptorreveals that dromaeosaurids still possessed many features found in more basal maniraptoran and coelurosaur clades, including some that may have been tied to herbivory. Rather than being a semiaquatic piscavore,Halszkaraptorwas a basal dromaeosaurid showing transitional features.
Band-dependent superconducting gap in SrFe2(As0.65P0.35)2 studied by angle-resolved photoemission spectroscopy
Authors: Suzuki H. , Kobayashi T. , Miyasaka S. , Okazaki K. , Yoshida T. , Horio M. , Ambolode L. C. C. , Ota Y. , Yamamoto H. , Shin S. , Hashimoto M. , Lu D. H. , Shen Z.-X. , Tajima S. , Fujimori A. 
Published: November 2019

AbstractThe isovalent-substituted iron pnictide compound SrFe2(As1−xPx)2 exhibits multiple evidence for nodal superconductivity via various experimental probes, such as the penetration depth, nuclear magnetic resonance and specific heat measurements. The direct identification of the nodal superconducting (SC) gap structure is challenging, partly because the presence of nodes is not protected by symmetry but instead caused by an accidental sign change of the order parameter, and also because of the three-dimensionality of the electronic structure. We have studied the SC gaps of SrFe2(As0.65P0.35)2 in three-dimensional momentum space by synchrotron and laser-based angle-resolved photoemission spectroscopy. The three hole Fermi surfaces (FSs) at the zone center have SC gaps with different magnitudes, whereas the SC gaps of the electron FSs at the zone corner are almost isotropic and kz-independent. As a possible nodal SC gap structure, we propose that the SC gap of the outer hole FS changes sign around the Z-X [(0, 0, 2π) − (π, π, 2π)] direction.