bluuebunny/crossref_metadata_2025_split huggingface dataset:
LENGTH VARIATION AND HETEROPLASMY ARE FREQUENT IN MITOCHONDRIAL DNA FROM PARTHENOGENETIC AND BISEXUAL LIZARDS (GENUS CNEMIDOPHORUS)
Authors: Densmore Llewellyn D , Wright John W , Brown Wesley M 
Published: January 2021

ABSTRACT
Samples of mtDNA isolated from each of 92 lizards representing all color pattern classes of Cnemidophorus tesselatus and two populations of C. tigris marmoratus were digested with the restriction endonucleases MboI, TaqI, RsaI and MspI. The mtDNA fragment sizes were compared after radioactive labeling and gel electrophoresis. Three features were notable in the comparisons: (1) there was little variation due to gain or loss of cleavage sites, (2) two fragments varied noticeably in length among the samples, one by a variable amount up to a maximum difference of ∼370 base pairs (bp) and the other by a discrete amount of 35 bp, (3) these two fragments occasionally varied within, as well as between, samples. Two regions that corresponded in size to these variants were identified by restriction endonuclease cleavage mapping. One of these is adjacent to the D-loop. Heteroplasmy, heretofore rarely observed, occurred frequently in these same two regions. Variability in the copy number of a tandemly repeated 64-bp sequence appears to be one component of the variation, but others (e.g., base substitutions or small additions/deletions) must also be involved. The frequent occurrence of these length variations suggests either that they can be generated rapidly or that they were inherited from a highly polymorphic ancestor. The former interpretation is favored.
TWO RECESSIVE SUPPRESSORS OF SACCHAROMYCES CEREVISIAE CHO1 THAT ARE UNLINKED BUT FALL IN THE SAME COMPLEMENTATION GROUP
Authors: Atkinson Katharine D 
Published: January 2021

ABSTRACT
Phenotypic reversion of ethanolamine-requiring Saccharomyces cerevisiae cho 1 mutants is predominantly due to recessive mutations at genes unlinked to the chromosome V cho 1 locus. The recessive suppressors do not correct the primary cho 1 defect in phosphatidylserine synthesis but circumvent it with a novel endogenous supply of ethanolamine. One suppressor (eam1) was previously mapped to chromosome X, and 135 suppressor isolates were identified as eam1 alleles by complementation analysis. Additional meiotic recombination studies have identified a second genetic locus, eam2, that falls in the eam1 complementation group but maps close to the centromere of chromosome IV. Although the normal EAM1 and EAM2 alleles are fully dominant over recessive mutant alleles, their dominance fails in diploids heterozygous for defects in both genes simultaneously. The unusual complementation pattern could be explained by interaction of the gene products in formation of the same enzyme.
COUPLED INSTABILITY OF TWO X-LINKED GENES IN DROSOPHILA MAURITIANA: GERMINAL AND SOMATIC MUTABILITY
Authors: Jacobson James W , Hartl Daniel L 
Published: January 2021

ABSTRACT
A highly unstable allele has been isolated at the white locus of Drosophila mauritiana, a sibling species of D. melanogaster. This allele, white-peach (wpch), mutates spontaneously in males and females to give both wild-type and bleached-white derivatives. The mutation frequency is about 10-3 mutations/generation. There is no evidence for clustering among mutant progeny, and phenotypically wpch flies with mosaic patches of wild-type tissue in the eyes are frequently recovered. Another X-linked locus, plum, is destabilized when wpch is on the same X chromosome.
THE EFFECT OF TRANSFORMER, DOUBLESEX AND INTERSEX MUTATIONS ON THE SEXUAL BEHAVIOR OF DROSOPHILA MELANOGASTER
Authors: McRobert Scott P , Tompkins Laurie 
Published: January 2021

ABSTRACT
We have identified the effects of genes that regulate sex determination on female-specific tissues in the abdomen that produce sex pheromones and parts of the central nervous system that function when a male performs courtship. To do this, we monitored the sexual behaviors of flies with mutations in the transformer (tra), doublesex (dsx) and intersex (ix) genes. Except for tra, which transforms diplo-X flies so that they look and function like normal males, these mutations do not have the same effect on pheromone-producing tissues and the central nervous system as they do on the appearance of the fly. The dsx and ix mutations, which make diplo-X-flies look like intersexes, do not transform the flies so that they can perform courtship, suggesting that these genes do not regulate the development of sex-specific parts of the central nervous system. Conversely, the ix mutation, which has no effect on the appearance of haplo-X flies, makes the flies sexually attractive and impairs their ability to perform courtship, which implies that the ix gene is active in internal tissues of males.
JOINT DISTRIBUTION OF INSERTION ELEMENTS IS4 AND IS5 IN NATURAL ISOLATES OF ESCHERICHIA COLI
Authors: Dykhuizen Daniel E , Sawyer Stanley A , Green Louis , Miller Raymond D , Hartl Daniel L 
Published: January 2021

ABSTRACT
A reference collection of natural isolates of Escherichia coli has been studied in order to determine the distribution, abundance and joint occurence of DNA insertion elements IS4 and IS5. Among these isolates, 36% were found to contain IS4 and 30% were found to contain IS5. Among strains containing IS4 the mean number of copies per strain was 4.4 ± 0.8; the comparable figure for IS5 was 3.7 ± 1.0. Although the presence of the elements among the isolates was independent, among those isolates containing both IS4 and IS5, there was a significant negative correlation in the number of copies of the elements.— The reference collection was also studied for the presence of the DNA sequences flanking the single copy of IS4 in the chromosome of E. coli K12. Homologous sequences were found in only 26% of the isolates. The sequences flanking the IS4 invariably occur together, and their presence is significantly correlated with the presence of IS4. In eight of the strains that carry these flanking sequences, an IS4 is located between them, and the sequences are present at the homologous position as in the K12 strain. We suggest that IS4 and its flanking sequences share a common mechanism of dissemination, such as plasmids, and we present evidence that they are included in a much larger transposable element.
AMYLASE VARIATION IN THE SALT MARSH AMPHIPOD, GAMMARUS PALUSTRIS
Authors: Borowsky Richard , Borowsky Betty , Milani Haleh , Greenberg Pietra 
Published: January 2021

ABSTRACT
There are two common alleles at the Amylase-2 locus in populations of Gammarus palustris, the salt marsh amphipod. Intensive sampling of individuals from two localities at Jamaica Bay revealed a consistent pattern of heterozygote deficiency.ߝFive possible sources of heterozygote deficiency were examined in this study. Four of themߝselection against heterozygotes, null alleles at the locus, assortative mating for amylase genotype and inbreedingߝare inconsistent with the evidence and are rejected. The fifth possibility, Wahlund effects due to genetic differentiation of the population, is tentatively accepted. Although there is no direct evidence for differentiation within this population, separate populations along the Eastern seaboard are highly differentiated in a nonclinal pattern. Furthermore, the Wahlund hypothesis is consistent with observations on differences in degree of deficiency exhibited among collections at Jamaica Bay.ߝAnimals from this population exhibit feeding preferences correlated with genotype. Given the choice of two green algae, Enteromorpha or Ulva, the frequency of the slow allele among individuals choosing Enteromorpha was higher than among those choosing Ulva. This suggests that the animals assort themselves in the field into subpopulations with different allelic frequencies. This assortment could contribute to the maintenance of the polymorphism and to the observed heterozygote deficiency. We hypothesize that genotype influences behavior in this system through the action of enzyme on substrate, which determines the nature of the oligosaccharide pool liberated early in amylolysis.
TRANSPOSABLE ELEMENT-INDUCED RESPONSE TO ARTIFICIAL SELECTION IN DROSOPHILA MELANOGASTER
Authors: Mackay Trudy F C 
Published: January 2021

ABSTRACT
The P family of transposable elements in Drosophila melanogaster transpose with exceptionally high frequency when males from P strains carrying multiple copies of these elements are crossed to females from M strains that lack P elements, but with substantially lower frequency in the reciprocal cross. Transposition is associated with enhanced mutation rates, caused by insertion and deletion of P elements, and chromosome rearrangements. If P element mutagenesis creates additional variation for quantitative traits, accelerated response to artificial selection of progeny of M♀♀ × P♂♂ strain crosses is expected, compared with that from progeny of P♀♀ × M♂♂ strain crosses.—Divergent artificial selection for number of bristles on the last abdominal tergite was carried out for 16 generations among the progeny of P–strain males (Harwich) and M–strain females (Canton-S) and also of M–strain males (Canton-S) and P-strain females (Harwich). Each cross was replicated four times. Average realized heritability of abdominal bristle score for the crosses in which P transposition was expected was 0.244 ± 0.017, 1.5 times greater than average heritability estimated from crosses in which transposition was expected to be rare (0.163 ± 0.010). Phenotypic variance of abdominal bristle score increased by a factor of four in lines selected from M♀♀ × P♂♂ crosses when compared with those selected from P♀♀ × M♂♂ hybrids. Not all quantitative genetic variation induced by P elements is additive. A substantial fraction of nonadditive genetic variation is implicated by chromosomal analysis, which demonstrates deleterious fitness effects of the mutations when homozygous.—Several putative "quantitative" mutations were identified from chromosomes extracted from the selected lines; these will form the basis for further investigation at the molecular level of the genes controlling quantitative inheritance.
POPULATION BOTTLENECKS AND NONEQUILIBRIUM MODELS IN POPULATION GENETICS. III. GENIC HOMOZYGOSITY IN POPULATIONS WHICH EXPERIENCE PERIODIC BOTTLENECKS
Authors: Maruyama Takeo , Fuerst Paul A 
Published: January 2021

ABSTRACT
The amount of variability in a population that experiences repeated restrictions in population size has been calculated. The restrictions in size occur cyclically with a fixed cycle length. Analytical formulas for describing the gene identity at any specific time in the expanded and restricted phases of the cycle, and for the average and second moment of the gene identity, have been derived. It is shown that the level of genetic diversity depends critically on the two parameters that account for the population size, mutation rate and the time of duration for each of the two phases in the cycle. If one or both of these composite parameters are small, the gene diversity will be much reduced, and population gene diversity will then be predictable from knowledge of the harmonic mean population size over the entire cycle. If these parameters take on intermediate values, diversity changes constantly during the cycle, fluctuating steadily from a high to a low value and back again. If these parameters are large, gene diversity will fluctuate rapidly between extreme values and will stay at the extremes for long periods of time.
GENETIC VARIABILITY OF FLIGHT METABOLISM IN DROSOPHILA MELANOGASTER. II. RELATIONSHIP BETWEEN POWER OUTPUT AND ENZYME ACTIVITY LEVELS
Authors: Laurie-Ahlberg C C , Barnes P T , Curtsinger J W , Emigh T H , Karlin B , Morris R , Norman R A , Wilton A N 
Published: January 2021

ABSTRACT
The major goal of the studies reported here was to determine the extent to which genetic variation in the activities of the enzymes participating in flight metabolism contributes to variation in the mechanical power output of the flight muscles in Drosophila melanogaster. Isogenic chromosome substitution lines were used to partition the variance of both types of quantitative trait into genetic and environmental components. The mechanical power output was estimated from the wingbeat frequency, wing amplitude and wing morphology of tethered flies by applying the aerodynamic models of Weis-Fogh and Ellington. There were three major results. (1) Chromosomes sampled from natural populations provide a large and repeatable genetic component to the variation in the activities of most of the 15 flight metabolism enzymes investigated and to the variation in the mechanical power output of the flight muscles. (2) The mechanical power output is a sensitive indicator of the rate of flight metabolism (i.e., rate of oxygen consumption during tethered flight). (3) In spite of (1) and (2), no convincing cases of individual enzyme effects on power output were detected, although the number and sign of the significant enzyme-power correlations suggests that such effects are not totally lacking.
CHROMOSOMAL EFFECTS ON MUTABILITY IN THE P-M SYSTEM OF HYBRID DYSGENESIS IN DROSOPHILA MELANOGASTER
Authors: Simmons Michael J , Raymond John D , Laverty Todd R , Doll Rhonda F , Raymond Nancy C , Kocur Gordon J , Drier Eric A 
Published: January 2021

ABSTRACT
Two manifestations of hybrid dysgenesis were studied in flies with chromosomes derived from two different P strains. In one set of experiments, the occurrence of recessive X-linked lethal mutations in the germ cells of dysgenic males was monitored. In the other, the behavior of an X-linked P-element insertion mutation, snw, was studied in dysgenic males and also in dysgenic females. The chromosomes of one P strain were more proficient at causing dysgenesis in both sets of experiments. However, there was variation among the chromosomes of each strain in regard to the ability to induce lethals or to destabilize snw. The X chromosome, especially when it came from the stronger P strain, had a pronounced effect on both measures of dysgenesis, but in combination with the major autosomes, these effects were reduced. For the stronger P strain, the autosomes by themselves contributed significantly to the production of X-linked lethals and also had large effects on the behavior of snw, but they did not act additively on these two characters. For this strain, the effects of the autosomes on the X-linked lethal mutation rate suggest that only 1/100 P element transpositions causes a recessive lethal mutation. For the weaker P strain, the autosomes had only slight effects on the behavior of snw and appeared to have negligible effects on the X-linked lethal mutation rate. Combinations of chromosomes from either the strong or the weak P strain affected both aspects of dysgenesis in a nonadditive fashion, suggesting that the P elements on these chromosomes competed with each other for transposase, the P-encoded function that triggers P element activity. Age and sex also influenced the ability of chromosomes and combinations of chromosomes to cause dysgenesis.
PAIRING COMPETITION BETWEEN IDENTICAL AND HOMOLOGOUS CHROMOSOMES IN AUTOTETRAPLOID RYE. I. SUBMETACENTRIC CHROMOSOMES
Authors: Orellana J , Santos J L 
Published: January 2021

ABSTRACT
Meiotic pairing preferences between identical and homologous but not identical chromosomes were analyzed in ten induced tetraploid/diploid chimaeral rye plants (Secale cereale) heterozygous for telomeric heerochromatin C-bands in both arms of chromosome 1R. These plants were the progeny of two crosses between only one plant of cv. Petkus, used as male, and two plants of the inbred lines E and R, respectively. Different pairing preferences for chromosome 1R were found: (1) between plants, (2) between chromosome arms within the same plant and (3) between bivalents and multivalents within the same plant. The possible influence in the preferences of several factors such as differences in C-heterochromatin content in the chromosomes analyzed, specific genetic control and independence in pairing behavior between both arms and partner exchange is discussed.
THE Mu TRANSPOSABLE ELEMENTS OF MAIZE: EVIDENCE FOR TRANSPOSITION AND COPY NUMBER REGULATION DURING DEVELOPMENT
Authors: Alleman Mary , Freeling Michael 
Published: January 2021

ABSTRACT
The Mu transposon of maize exists in a highly mutagenic strain called Robertson's Mutator. Plants of this strain contain 10-50 copies of the Mu element, whereas most maize strains and other plants have none. When Mutator plants are crossed to plants of the inbred line 1S2P, which does not have copies of Mu, the progeny plants have approximately the same number of Mu sequences as did their Mutator parent. Approximately one-half of these copies have segregated from their parent and one-half have arisen by transposition and are integrated into new positions in the genome. This maintenance of copy number can be accounted for by an extremely high rate of transposition of the Mu elements (10-15 transpositions per gamete per generation). When Mutator plants are self-pollinated, the progeny double their Mu copy number in the first generation, but maintain a constant number of Mu sequences with subsequent self-pollinations. Transposition of Mu and the events that lead to copy number maintenance occur very late in the development of the germ cells but before fertilization. A larger version of the Mu element transposes but is not necessary for transposition of the Mu sequences. The progeny of crosses with a Mutator plant occasionally lack Mutator activity; these strains retain copies of the Mu element, but these elements no longer transpose.
A TWO-LOCUS NEUTRALITY TEST: APPLICATIONS TO HUMANS, E. COLI AND LODGEPOLE PINE
Authors: Hedrick Philip W , Thomson Glenys 
Published: January 2021

ABSTRACT
The expected disequilibrium between two loci with k alleles at one locus and l alleles at the other is given for a sample of size n drawn from a population under neutrality equilibrium. Three different measures of disequilibrium with 95% intervals are tabulated for combinations of n, k, l and 4Nc, where N is the effective population size and c is the amount of recombination between the loci. The extent and pattern of disequilibrium are strongly dependent upon 4Nc and are somewhat dependent on n, k and l. The 95% intervals are large, particularly for low numbers of alleles and low values of 4Nc. As examples, observed disequilibrium from histocompatibility loci in humans (HLA) and electrophoretic data in E. coli and lodgepole pine were compared to these theoretical values. Using information about recombination rates, the HLA data showed more disequilibrium than neutrality expectations, whereas electrophoretic data from E. coli and lodgepole pine had somewhat less disequilibrium than neutrality expectations.
THE USE OF RESTRICTION FRAGMENT LENGTH POLYMORPHISMS AND DNA DUPLICATIONS TO STUDY THE ORGANIZATION OF THE ACTIN MULTIGENE FAMILY IN DICTYOSTELIUM DISCOIDEUM
Authors: Welker Dennis L , Hirth K Peter , Romans Patricia , Noegel Angelika , Firtel Richard A , Williams Keith L 
Published: January 2021

ABSTRACT
The techniques of restriction fragment length polymorphism analysis and examination of gene copy number in duplication-bearing Dictyostelium discoideum strains have been used to map four actin genes of the wild-type strain NC4 to specific linkage groups. In part, this was accomplished by identification of restriction fragments corresponding to particular cloned actin genes using genespecific probes from unique sequence 5' and 3' untranslated regions. Cloned gene Actin 8 (designation act-8) maps to linkage group I; Actins 12 (act-12) and M6 (actM6) to linkage group II. An uncloned gene (act-100) also maps to linkage group II in the same region as actM6, as defined by a chromosomal duplication. From analysis of other wild isolates of D. discoideum, it was determined that in these isolates at least two actin genes map to linkage group I and at least four map to linkage group II. These results demonstrate the utility of molecular techniques in genetic analysis of Dictyostelium, particularly for developmentally regulated genes that have been cloned but that have no identified mutant phenotypes.
MOLECULAR GENETIC ANALYSIS OF THE DILUTE-SHORT EAR (d-se) REGION OF THE MOUSE
Authors: Rinchik Eugene M , Russell Liane B , Copeland Neal G , Jenkins Nancy A 
Published: January 2021

ABSTRACT
Genes of the dilute-short ear (d-se) region of mouse chromosome 9 comprise an array of loci important to the normal development of the animal. Over 200 spontaneous, chemically induced and radiation-induced mutations at these loci have been identified, making it one of the most genetically well-characterized regions of the mouse. Molecular analysis of this region has recently become feasible by the identification of a dilute mutation that was induced by integration of an ecotropic murine leukemia virus genome. Several unique sequence cellular DNA probes flanking this provirus have now been identified and used to investigate the organization of wild-type chromosomes and chromosomes with radiation-induced d-se region mutations. As expected, several of these mutations are associated with deletions, and, in general, the molecular and genetic complementation maps of these mutants are concordant. Furthermore, a deletion break-point fusion fragment has been identified and has been used to orient the physical map of the d-se region with respect to the genetic complementation map. These experiments provide important initial steps for analyzing this developmentally important region at the molecular level, as well as for studying in detail how a diverse group of mutagens acts on the mammalian germline.
ON THE IDENTIFICATION OF THE ROSY LOCUS DNA IN DROSOPHILA MELANOGASTER: INTRAGENIC RECOMBINATION MAPPING OF MUTATIONS ASSOCIATED WITH INSERTIONS AND DELETIONS
Authors: Clark S H , McCarron M , Love C , Chovnick A 
Published: January 2021

ABSTRACT
DNA extracts of several rosy-mutation-bearing strains were associated with large insertions and deletions in a defined region of the molecular map believed to include the rosy locus DNA. Large-scale, intragenic mapping experiments were carried out that localized these mutations within the boundaries of the previously defined rosy locus structural element. Molecular characterization of the wild-type recombinants provides conclusive evidence that the rosy locus DNA is localized to the DNA segment marked by these lesions.—One of the mutations, ry 2101, arose from a P-M hybrid dysgenesis experiment and is associated with a copia insertion. Experiments are described which suggest that copia mobilizes in response to P-M hybrid dysgenesis.—Relevance of the data to recombination in higher organisms is considered.
TOWARD A SATURATED LINKAGE MAP IN TOMATO BASED ON ISOZYMES AND RANDOM cDNA SEQUENCES
Authors: Bernatzky Robert , Tanksley Steven D 
Published: January 2021

ABSTRACT
A linkage map in tomato has been developed based on isozyme and random cDNA clones derived from mRNA. Interspecific backcross and F2 populations of Lycopersicon esculentum and L. pennellii were employed in the linkage analysis. Allelic differences in cDNA markers were based on restriction fragment length polymorphisms detected through Southern analysis. A total of 57 unique cDNA clones have been analyzed. The majority of cDNA markers correspond to single loci and are dispersed throughtout the genome. Of those clones that hybridize to two or more loci, most show genetic independence (ie., they are unlinked). The combination of isozyme, cDNA and previously mapped DNA markers total 112 loci. It is estimated that approximately 92% of the genome can be monitored during segregation with these markers. Molecular maps, such as the one being constructed in tomato, may allow genetic and breeding experiments that previously were not possible.