bluuebunny/crossref_metadata_2025_split huggingface dataset:
Oral microbial dysbiosis and its performance in predicting oral cancer
Authors: Su Shih-Chi , Chang Lun-Ching , Huang Hsien-Da , Peng Chih-Yu , Chuang Chun-Yi , Chen Yi-Tzu , Lu Ming-Yi , Chiu Yu-Wei , Chen Pei-Yin , Yang Shun-Fa 
Published: July 2020

Abstract
Dysbiosis of oral microbiome may dictate the progression of oral squamous cell carcinoma (OSCC). Yet, the composition of oral microbiome fluctuates by saliva and distinct sites of oral cavity and is affected by risky behaviors (smoking, drinking and betel quid chewing) and individuals’ oral health condition. To characterize the disturbances in the oral microbial population mainly due to oral tumorigenicity, we profiled the bacteria within the surface of OSCC lesion and its contralateral normal tissue from discovery (n = 74) and validation (n = 42) cohorts of male patients with cancers of the buccal mucosa. Significant alterations in the bacterial diversity and relative abundance of specific oral microbiota (most profoundly, an enrichment for genus Fusobacterium and the loss of genus Streptococcus in the tumor sites) were identified. Functional prediction of oral microbiome shown that microbial genes related to the metabolism of terpenoids and polyketides were differentially enriched between the control and tumor groups, indicating a functional role of oral microbiome in formulating a tumor microenvironment via attenuated biosynthesis of secondary metabolites with anti-cancer effects. Furthermore, the vast majority of microbial signatures detected in the discovery cohort was generalized well to the independent validation cohort, and the clinical validity of these OSCC-associated microbes was observed and successfully replicated. Overall, our analyses reveal signatures (a profusion of Fusobacterium nucleatum CTI-2 and a decrease in Streptococcus pneumoniae) and functions (decreased production of tumor-suppressive metabolites) of oral microbiota related to oral cancer.
Increased Arginase1 expression in tumor microenvironment promotes mammary carcinogenesis via multiple mechanisms
Authors: Croce Michela , Damonte Patrizia , Morini Monica , Pigozzi Simona , Chiossone Laura , Vacca Paola , Bronte Vincenzo , Barbieri Ottavia , Astigiano Simonetta 
Published: July 2020

Abstract
Arginine metabolism plays a significant role in regulating cell function, affecting tumor growth and metastatization. To study the effect of the arginine-catabolizing enzyme Arginase1 (ARG1) on tumor microenvironment, we generated a mouse model of mammary carcinogenesis by crossbreeding a transgenic mouse line overexpressing ARG1 in macrophages (FVBArg+/+) with the MMTV-Neu mouse line (FVBNeu+/+). This double transgenic line (FVBArg+/−;Neu+/+) showed a significant shortening in mammary tumor latency, and an increase in the number of mammary nodules. Transfer of tumor cells from FVBNeu+/+ into either FVB wild type or FVBArg+/+ mice resulted in increase regulatory T cells in the tumor infiltrate, suggestive of an impaired antitumor immune response. However, we also found increased frequency of tumor stem cells in tumors from FVBArg+/−;Neu+/+ transgenic compared with FVBNeu+/+ mice, suggesting that increased arginine metabolism in mammary tumor microenvironment may supports the cancer stem cells niche. We provide in vivo evidence of a novel, yet unexploited, mechanism through which ARG1 may contribute to tumor development.
NF-κB-miR-155 axis activation mediates ovulation-induced oncogenic effects in fallopian tube epithelium
Authors: Brand Hadar , Barnabas Georgina D , Sapoznik Stav , Bahar-Shany Keren , Pozniak Yair , Yung Yuval , Hourvitz Ariel , Geiger Tamar , Jacob-Hirsch Jasmine , Levanon Keren 
Published: July 2020

Abstract
The fallopian tube secretory epithelial cells (FTSECs) are the cell-of-origin of most high-grade serous ovarian carcinomas (HGSOC). FTSECs are repeatedly exposed to inflammation induced by follicular fluid (FF) that is released with every ovulation cycle throughout a woman’s reproductive years. Uninterrupted ovulation cycles are an established risk factor for HGSOC. Stimuli present in the FF induce an inflammatory environment which may cause DNA damage eventually leading to serous tumorigenesis. With the aim of elucidating possible mechanistic pathways, we established an ‘ex vivo persistent ovulation model’ mimicking the repeated exposure of human benign fallopian tube epithelium (FTE) to FF. We performed mass spectrometry analysis of the secretome of the ex vivo cultures as well as confirmatory targeted expressional and functional analyses. We demonstrated activation of the NF-κB pathway and upregulation of miR-155 following short-term exposure of FTE to human FF. Increased expression of miR-155 was also detected in primary HGSOC tumors compared with benign primary human FTE and corresponded with changes in the expression of miR-155 target genes. The phenotype of miR-155 overexpression in FTSEC cell line is of increased migratory and altered adhesion capacities. Overall, activation of the NF-κB-miR-155 axis in FTE may represent a possible link between ovulation-induced inflammation, DNA damage, and transcriptional changes that may eventually lead to serious carcinogenesis.
Parietal Oscillatory Dynamics Mediate Developmental Improvement in Motor Performance
Authors: Heinrichs-Graham Elizabeth , Taylor Brittany K , Wang Yu-Ping , Stephen Julia M , Calhoun Vince D , Wilson Tony W 
Published: July 2020

Abstract
Numerous recent studies have sought to determine the developmental trajectories of motor-related oscillatory responses from youth to adulthood. However, most of this work has relied on simple movements, and rarely have these studies linked developmental neural changes with maturational improvements in motor performance. In this study, we recorded magnetoencephalography during a complex finger-tapping task in a large sample of 107 healthy youth aged 9–15 years old. The relationships between region-specific neural activity, age, and performance metrics were examined using structural equation modeling. We found strong developmental effects on behavior and beta oscillatory activity during movement planning, as well as associations between planning-related beta activity and activity within the same region during the movement execution period. However, when all factors were tested, we found that only right parietal cortex beta dynamics mediated the relationship between age and performance on the task. These data suggest that strong, sustained beta activity within the right parietal cortex enhances motor performance, and that these sustained oscillations develop through childhood into early adolescence. In sum, these are the first data to link developmental trajectories in beta oscillatory dynamics with distinct motor performance metrics and implicate the right parietal cortex as a crucial hub in movement execution.
A Rapid and Sensitive HPLC Method for Simultaneous Determination of Irinotecan Hydrochloride and Curcumin in Co-delivered Polymeric Nanoparticles
Authors: Xiao Haijun , Sedlařík Vladimír 
Published: July 2020

Abstract
In recent years, a great deal of attention has been paid to the combined use of multiple antitumor drugs for better cancer treatment. The aims of the study are to construct a nanoparticle drug delivery system for the co-delivery of irinotecan hydrochloride and curcumin and to develop an analytical method for simultaneously quantifying these molecules, which is essential for further studies of the co-delivered nano system. The irinotecan hydrochloride and curcumin co-delivered nanoparticle (ICN) were prepared by combinatorially entrapping them into polyethylene glycol–poly lactic acid-co-glycolic acid (PEG–PLGA) polymeric nanoparticles. A simple, sensitive and rapid high-performance liquid chromatography method was developed and validated to simultaneously quantify the compounds in the co-delivered nanoparticle system. Acetonitrile and ultrapure water containing sodium dodecyl sulfate (0.08 mol/L), disodium phosphate (Na2HPO4, 0.002 mol/L) and acetic acid (4%, v/v) were used as the mobile phase and their ratio was set at 50:50. The flow rate was set to 1.0 mL/min, and the temperature in the column oven was maintained at 40°C. The analysis was carried out at 256 and 424 nm to assess irinotecan hydrochloride and curcumin, respectively. Detectors with only one channel can also visualize both analytes in one chromatogram at 379 nm and still demonstrate acceptable sensitivity. The retention times for irinotecan hydrochloride and curium were 3.317 and 5.560 min, respectively. The method developed was confirmed to be sensitive, accurate (recovery, 100 ± 2%), precise (relative standard deviation, RSD ≤ 1%), robust and linear (R2 ≥ 0.9996) in the range from 2.05 to 1050 μg/mL. The presented method has been used to quantify irinotecan hydrochloride and curcumin in the co-delivered ICN nano system to assess the drug delivery quality of the nanoparticles and can also be used for routine analysis because of its simplicity and accuracy.
Piping Plover population increase after Hurricane Sandy mediated by immigration and reproductive output
Authors: Robinson Samantha G , Gibson Daniel , Riecke Thomas V , Fraser James D , Bellman Henrietta A , DeRose-Wilson Audrey , Karpanty Sarah M , Walker Katie M , Catlin Daniel H 
Published: July 2020

AbstractEvaluating population-level responses to conservation action following large-scale disturbance can improve the efficacy of future habitat conservation measures. In October 2012, Hurricane Sandy storm surges cleared vegetation and opened inlets through the barrier islands, Fire Island and Westhampton Island, New York, creating Piping Plover (Charadrius melodus) habitat. Storm effects prompted an island-wide stabilization project, which had the potential to negatively affect novel Piping Plover habitat. Certain sections of Fire Island were designed to create and/or improve habitat (hereafter, restoration areas) to mitigate possible habitat loss or degradation. Since Piping Plovers in New York appear to be habitat-limited, we anticipated positive population growth following habitat creation. From 2013 to 2018, we captured and banded 152 adults and 353 chicks, and monitored 279 nests and 160 broods. We developed an integrated population model to assess demographic processes in response to hurricane created-habitat (2013–2018) and the creation of restoration areas (2015–2018). We observed positive population growth in 3 of 5 yr, and overall growth throughout the period (λ¯ = 1.13). Immigration and reproductive output were correlated with population growth (r = 0.92 [95% CI: 0.22 to 0.98] and 0.84 [95% CI: –0.47 to 0.95], respectively). Compared with the rest of the study area, restoration areas had higher chick survival, and lower nest survival and after second-year site fidelity. The result was population growth in restoration areas (λ¯= 1.14) similar to the whole study area. In the short term, restoration areas seemed to mimic natural Piping Plover habitat. Vegetation removal, an important process in renewing natural Piping Plover habitat, likely will be necessary to maintain habitat suitability. Efforts to increase immigration of new breeding adults into the system, and to improve reproductive output, primarily by habitat creation or maintenance, are likely to have the greatest local effect on population growth.
Multicenter study on the diagnostic performance of multiframe volumetric laser endomicroscopy targets for Barrett’s esophagus neoplasia with histopathology correlation
Authors: Struyvenberg M R , de Groof A J , Kahn A , Weusten B L A M , Fleischer D E , Ganguly E K , Konda V J A , Lightdale C J , Pleskow D K , Sethi A , Smith M S , Trindade A J , Wallace M B , Wolfsen H C , Tearney G J , Meijer S L , Leggett C L , Bergman J J G H M , Curvers W L 
Published: July 2020

AbstractVolumetric laser endomicroscopy (VLE) has been shown to improve detection of early neoplasia in Barrett’s esophagus (BE). However, diagnostic performance using histopathology-correlated VLE regions of interest (ROIs) has not been adequately studied. We evaluated the diagnostic accuracy of VLE assessors for identification of early BE neoplasia in histopathology-correlated VLE ROIs. In total, 191 ROIs (120 nondysplastic and 71 neoplastic) from 50 BE patients were evaluated in a random order using a web-based module. All ROIs contained histopathology correlations enabled by VLE laser marking. Assessors were blinded to endoscopic BE images and histology. ROIs were first scored as nondysplastic or neoplastic. Level of confidence was assigned to the predicted diagnosis. Outcome measures were: (i) diagnostic performance of VLE assessors for identification of BE neoplasia in all VLE ROIs, defined as accuracy, sensitivity, and specificity; (ii) diagnostic performance of VLE assessors for only high level of confidence predictions; and (iii) interobserver agreement. Accuracy, sensitivity, and specificity for BE neoplasia identification were 79% (confidence interval [CI], 75–83), 75% (CI, 71–79), and 81% (CI, 76–86), respectively. When neoplasia was identified with a high level of confidence, accuracy, sensitivity, and specificity were 88%, 83%, and 90%, respectively. The overall strength of interobserver agreement was fair (k = 0.29). VLE assessors can identify BE neoplasia with reasonable diagnostic accuracy in histopathology-correlated VLE ROIs, and accuracy is enhanced when BE neoplasia is identified with high level of confidence. Future work should focus on renewed VLE image reviewing criteria and real-time automatic assessment of VLE scans.
Esophageal contractile segment impedance from high-resolution impedance manometry correlates with mean nocturnal baseline impedance and acid exposure time from 24-hour pH-impedance monitoring
Authors: Horton Anthony , Posner Shai , Sullivan Brian , Cornejo Jennifer , Davis Andrea , Fields Monika , McIntosh Thasha , Gellad Ziad , Shimpi Rahul , Gyawali C Prakash , Patel Amit 
Published: July 2020

Summary
Esophageal baseline impedance (BI) acquired during esophageal contraction (contractile segment impedance [CSI]) is proposed to improve BI accuracy in gastroesophageal reflux disease (GERD). We evaluated associations between CSI and conventional and novel GERD metrics. We analyzed high-resolution impedance manometry (HRIM) and ambulatory pH-impedance studies from 51 patients (58.6 ± 1.5 years; 26% F) with GERD symptoms studied off antisecretory therapy. Patients with achalasia or absent contractility were excluded. CSI (averaged across 10 swallows) and BI-HRIM (from the resting landmark phase) were acquired from the distal impedance sensors (distal sensor and 5 cm above the lower esophageal sphincter). Acid exposure time (AET) and mean nocturnal baseline impedance (MNBI) were calculated. Associations between CSI, BI-HRIM, MNBI, and AET were evaluated using correlation (Pearson) and receiver operating characteristic (ROC) analysis. Presenting symptoms included heartburn (67%), regurgitation (12%), cough (12%), and chest pain (10%). CSI-distal and CSI-5 each correlated with BI-HRIM, AET, and distal MNBI. Associations with AET were numerically stronger for CSI-distal (r = −0.46) and BI-HRIM-distal (r = −0.44) than CSI-5 (r = −0.33), BI-HRIM-5 (r = −0.28), or distal MNBI (r &lt; −0.36). When compared to AET &lt;4%, patients with AET &gt;6% had significantly lower CSI-distal and BI-HRIM-distal values but not CSI-5, BI-HRIM-5, or MNBI. ROC areas under the curve for AET &gt;6% were numerically higher for CSI-distal (0.81) than BI-HRIM-distal (0.77), distal MNBI (0.68–0.75), CSI-5 (0.68), or BI-HRIM-5 (0.68). CSI from HRIM studies inversely correlates with pathologic AET and has potential to augment the evaluation of GERD.
Capturing Spatiotemporal Patterns in Presence-Absence Data to Inform Monitoring and Sampling Designs for the Threatened Dakota Skipper (Lepidoptera: Hesperiidae) in the Great Plains of the United States
Authors: Post van der Burg Max , Austin Jane E , Wiltermuth Mark T , Newton Wesley , MacDonald Garrett 
Published: July 2020

AbstractDeclines among species of insect pollinators, especially butterflies, has garnered attention from scientists and managers. Often these declines have spurred governments to declare some species as threatened or endangered. We used existing presence–absence data from surveys for the threatened Dakota skipper Hesperia dacotae (Skinner) to build statistical maps of species presence that could be used to inform future monitoring designs. We developed a hierarchical Bayesian modeling approach to estimate the spatial distribution and temporal trend in Dakota skipper probability of presence. Our model included a spatial random effect and fixed effects for the proportion of two grassland habitat types: those on well-drained soils and those on poorly drained soils; as well as the topographic slope. The results from this model were then used to assess sampling strategies with two different monitoring objectives: locating new Dakota skipper colonies or monitoring the proportion of historically (pre-2000) extant colonies. Our modeling results suggested that the distribution of Dakota skippers followed the distribution of remnant grasslands and that probabilities of presence tended to be higher in topographically diverse grasslands with well-drained soils. Our analysis also showed that the probability of presence declined throughout the northern Great Plains range. Our simulations of the different sampling designs suggested that new detections were expected when sampling where Dakota skippers likely occurred historically, but this may lead to a tradeoff with monitoring existing sites. Prior information about the extant sites may help to ameliorate this tradeoff.
Contemporary rationale for non-invasive imaging of adverse coronary plaque features to identify the vulnerable patient: a Position Paper from the European Society of Cardiology Working Group on Atherosclerosis and Vascular Biology and the European Association of Cardiovascular Imaging
Authors: Dweck Marc R , Maurovich-Horvat Pál , Leiner Tim , Cosyns Bernard , Fayad Zahi A , Gijsen Frank J H , Van der Heiden Kim , Kooi M Eline , Maehara Akiko , Muller James E , Newby David E , Narula Jagat , Pontone Gianluca , Regar Evelyn , Serruys Patrick W , van der Steen Antonius F W , Stone Peter H , Waltenberger Johannes L , Yuan Chun , Evans Paul C , Lutgens Esther , Wentzel Jolanda J , Bäck Magnus 
Published: July 2020

AbstractAtherosclerotic plaques prone to rupture may cause acute myocardial infarction (MI) but can also heal without causing an event. Certain common histopathological features, including inflammation, a thin fibrous cap, positive remodelling, a large necrotic core, microcalcification, and plaque haemorrhage are commonly found in plaques causing an acute event. Recent advances in imaging techniques have made it possible to detect not only luminal stenosis and overall coronary atherosclerosis burden but also to identify such adverse plaque characteristics. However, the predictive value of identifying individual adverse atherosclerotic plaques for future events has remained poor. In this Position Paper, the relationship between vulnerable plaque imaging and MI is addressed, mainly for non-invasive assessments but also for invasive imaging of adverse plaques in patients undergoing invasive coronary angiography. Dynamic changes in atherosclerotic plaque development and composition may indicate that an adverse plaque phenotype should be considered at the patient level rather than for individual plaques. Imaging of adverse plaque burden throughout the coronary vascular tree, in combination with biomarkers and biomechanical parameters, therefore holds promise for identifying subjects at increased risk of MI and for guiding medical and invasive treatment.
New insights of tricuspid regurgitation: a large-scale prospective cohort study
Authors: Vieitez José María , Monteagudo Juan Manuel , Mahia Patricia , Perez Leopoldo , Lopez Teresa , Marco Irene , Perone Francesco , González Teresa , Sitges Marta , Bouzas Alberto , González Violeta , Li Pedro , Alonso David , Carrasco Fernando , Adeba Antonio , de la Heras José María , Fernandez-Golfin Covadonga , Zamorano José Luis 
Published: July 2020

Abstract

Aims
To evaluate the burden of tricuspid regurgitation (TR) in a large cohort, determine the right ventricle involvement of patients with TR and determine the characteristics of isolated TR.

Methods and results
Prospective study where consecutive patients undergoing an echocardiographic study in 10 centres were included. All studies with significant TR (at least moderate) were selected. We considered that patients with one of pulmonary systolic hypertension &gt;50 mmHg, left ventricular ejection fraction &lt;35%, New York Heart Association III–IV, or older than 85 years, had a high surgical risk. A total of 35 088 echocardiograms were performed. Significant TR was detected in 6% of studies. Moderate TR was found in 69.6%, severe in 25.5%, massive in 3.9%, and torrential in 1.0% of patients. Right ventricle was dilated in 81.7% of patients with massive/torrential TR, in 55.9% with severe TR, and in 29.3% with moderate TR (P &lt; 0.001). Primary TR was present in 7.4% of patients whereas secondary TR was present in 92.6%. Mitral or aortic valve disease was the most common aetiology (54.6%), following by isolated TR (16%). Up to 51.9% of patients with severe, massive, or torrential primary TR and 57% of patients with severe, massive, or torrential secondary TR had a high surgical risk.

Conclusion
Significant TR is a prevalent condition and a high proportion of these patients have an indication for valve intervention. More than a half of patients with severe, massive, or torrential TR had a high surgical risk. Massive/torrential TR may have implications regarding selection and monitoring patients for percutaneous treatment.
Long-term results of large-calibre expanded polytetrafluoroethylene-valved conduits with bulging sinuses
Authors: Fujita Shuhei , Yamagishi Masaaki , Miyazaki Takako , Maeda Yoshinobu , Itatani Keiichi , Yamamoto Yusuke , Asada Satoshi , Hongu Hisayuki , Nakatsuji Hiroki , Yaku Hitoshi 
Published: July 2020

Abstract

OBJECTIVES

In Japan, homograft and bovine jugular vein are available in very limited institutions for the reconstruction of the right ventricular outflow tract, and handmade expanded polytetrafluoroethylene (ePTFE)-valved conduits have been widely used instead. This study aimed to clarify the long-term outcomes and the durability of the ePTFE-valved conduits purely by narrowing down to those with large sizes to eliminate the influence of the body growth.

METHODS
Between January 2002 and December 2015, patients who underwent right ventricular outflow tract reconstruction in 34 Japanese institutions using ePTFE-valved conduits with a diameter of ≥18 mm were included. All the valved conduits were made in the authors’ institution and delivered to each participating institution.

RESULTS
Overall, 502 patients were included. Early mortality was 1.4% and not related to conduit failure. The overall survival rate was 98.2% at 5 years and 96.6% at 10 years. Freedom from conduit explantation was 99.5% at 5 years and 89.0% at 10 years. Three patients (0.13 per 100 patient-years) developed infective endocarditis of the conduit, and only 1 patient required conduit removal. Pulmonary insufficiency was mild or less in 480 (96%) patients, and conduit stenosis was mild or less in 436 (88%) patients at the latest follow-up.

CONCLUSIONS
By narrowing the analyses down to only ePTFE conduits with a large size, satisfactory long-term outcomes of these conduits with a fan-shaped valve and bulging sinuses were shown. These conduits would be among the optimal choices for right ventricular outflow tract reconstruction.