bluuebunny/crossref_metadata_2025_split huggingface dataset:
Does Channel Narrowing by Floodplain Growth Necessarily Indicate Sediment Surplus? Lessons From Sediment Transport Analyses in the Green and Colorado Rivers, Canyonlands, Utah
Authors: Dean David J. , Topping David J. , Grams Paul E. , Walker Alexander E. , Schmidt John C. 
Published: October 2020

AbstractAnalyses of suspended sediment transport provide valuable insight into the role that sediment supply plays in causing geomorphic change. The sediment supply within a river system evolves depending on the discharge, flood frequency and duration, changes in sediment input, and ecohydraulic conditions that modify sediment transport processes. Changes in supply can be evaluated through analyses of coupled changes in suspended sediment concentration and grain size. The concentration of sand in transport in the Green and Colorado Rivers is most strongly controlled by discharge and the bed sand grain size distribution. Since the 1950s, sand loads have decreased in response to declines in peak discharge in the Green River and coarsening of the bed sand in the Colorado River. However, changes in the bed sand grain size distribution are associated with large changes in suspended sand concentration in both rivers; concentration varies by a factor of ~3 in the Green River and a factor of ~8 in the Colorado River, depending on the bed sand grain size distribution. Analyses of hysteresis in suspended sediment measurements show that sediment depletion during annual floods is most strongly controlled by flood duration, with peak discharge being nearly equally important in the Green River. Despite channel narrowing in both rivers, periods of bed sand coarsening and sediment depletion during annual floods indicate that these rivers are not necessarily in sediment surplus. Channel narrowing appears to be strongly controlled by short‐term declines in flood magnitude and the ecohydraulic effects of vegetation and may not be indicative of the long‐term sediment budget.
An Introduction to the E3SM Special Collection: Goals, Science Drivers, Development, and Analysis
Authors: Leung L. Ruby , Bader David C. , Taylor Mark A. , McCoy Renata B. 
Published: October 2020

AbstractSupported by the U.S. Department of Energy (DOE), the Energy Exascale Earth System Model (E3SM) project aims to optimize the use of DOE resources to address the grand challenge of actionable predictions of Earth system variability and change. This requires sustained advancement to (1) integrate model development with leading‐edge computational advances toward ultra‐high‐resolution modeling; (2) represent the coupled human‐Earth system to address energy sector vulnerability to variability and change; and (3) address uncertainty in model simulations and projections. Scientific development of the E3SM modeling system is driven by the simulation requirements in three overarching science areas centering on understanding the Earth's water cycle, biogeochemistry, and cryosphere systems and their future changes. This paper serves as an introduction to the E3SM special collection, which includes 50 papers published in several AGU journals. It provides an overview of the E3SM project, including its goals and science drivers. It also provides a brief history of the development of E3SM version 1 and highlights some key findings from papers included in the special collection.
Annual Net Community Production of Particulate and Dissolved Organic Carbon From a Decade of Biogeochemical Profiling Float Observations in the Northeast Pacific
Authors: Haskell W. Z. , Fassbender A. J. , Long J. S. , Plant J. N. 
Published: October 2020

AbstractCarbon export out of the surface ocean via the biological pump is a critical sink for atmospheric carbon dioxide. This process transports organic carbon to the deep ocean through sinking particulate organic carbon (POC) and the downward transport of suspended POC and dissolved organic carbon (DOC). Changes in the relative contribution of each pathway can significantly affect the magnitude and efficiency of carbon export to depth. Net community production (NCP), an analog of carbon export under steady state assumptions, is typically estimated using budgets of biologically important chemical tracers in the upper ocean constrained by ship‐board or autonomous platform observations. In this study, we use measurements from biogeochemical profiling floats, the Ocean Station Papa mooring, and recently developed algorithms for carbonate system parameters to constrain budgets for three tracers (nitrate, dissolved inorganic carbon, and total alkalinity) and estimate NCP in the Northeast Pacific from 2009 to 2017. Using our multiple‐tracer approach, and constraining end‐member nutrient ratios of the POC and DOC produced, we not only calculate regional NCP throughout the annual cycle and across multiple depth horizons, but also partition this quantity into particulate and dissolved portions. We also use a particle backscatter‐based approach to estimate POC attenuation with depth and present a new method to constrain particle export across deeper horizons and estimate in situ export efficiency. Our results agree well with previously published estimates of regional carbon export annually and suggest that the approaches presented here could be used to assess the magnitude and efficiency of carbon export in other regions of the world's oceans.
Ionospheric Responses at Low Latitudes to the Annular Solar Eclipse on 21 June 2020
Authors: Huang Fuqing , Li Qiaoling , Shen Xuhui , Xiong Chao , Yan Rui , Zhang Shun‐Rong , Wang Wenbin , Aa Ercha , Zhong Jiahao , Dang Tong , Lei Jiuhou 
Published: October 2020

AbstractIn this study, we utilized both ground‐based and space‐borne observations including total electron content (TEC) from Beidou geostationary satellites, two‐dimensional TEC maps from the worldwide dense Global Navigation Satellite System receivers, ionosondes, and in situ electron density (Ne) and electron temperature (Te) from both Swarm and China Seismo‐Electromagnetic Satellite satellites, to investigate the low‐latitude ionospheric responses to the annular solar eclipse on 21 June 2020. The decrease in TEC during the eclipse at low latitudes showed a local time dependence with the largest depletions in the noon and afternoon sectors. It was also found that the TEC depletions at different latitudes in the equatorial ionization anomaly (EIA) region over the East Asian sector cannot solely be explained by the solar flux changes associated with the obscuration rate. The differences in TEC reduction between stations can be more than a factor of 2 at latitudes with the same obscuration rate of over 90%. Compared with TEC variations in the Northern Hemisphere, the TEC also underwent a considerable decrease in the EIA region in the conjugate hemisphere without eclipse shadow. Meanwhile, the hmF2 near the magnetic equator increased around the onset of the eclipse, indicating an enhancement of the eastward equatorial electric field. Furthermore, the TEC decrease during the eclipse in the EIA region in both hemispheres lasted for a long period of more than 7 hr after the eclipse, with a TEC depletion of 2–6 TEC units. The Ne from Swarm and China Seismo‐Electromagnetic Satellite satellites showed a complicated variation after the eclipse, whereas no visible change was observed in Te. The enhanced equatorial electric field, neutral wind changes, and the associated plasma transport act together to generate the observed ionospheric effects at low latitudes during the eclipse. Our results also suggest that the eclipse‐induced perturbations of dynamic processes can continue to impact the ionosphere after the eclipse.
Seismic Structure of a Postspreading Seamount Emplaced on the Fossil Spreading Center in the Southwest Subbasin of the South China Sea
Authors: Zhang Jie , Li Jiabiao , Ruan Aiguo , Ding Weiwei , Niu Xiongwei , Wang Wei , Tan Pingchuan , Wu Zhenli , Yu Zhiteng , Wei Xiaodong , Zhao Yanghui , Zhou Zhiyuan 
Published: October 2020

AbstractPostspreading seamounts are unique seamounts built by volcanism after seafloor spreading had ceased. Limited understanding of their formation processes is mainly due to the lack of investigation. Therefore, we conducted a three‐dimensional wide‐angle seismic experiment in the Southwest Subbasin of the South China Sea and four profiles were acquired within the inactive spreading center over a postspreading seamount. Based on ocean bottom seismometer data, we report two‐dimensional velocity structures of the Longnan seamount. Our results show that a low P wave velocity body (2.9–5.0 km/s, 4 km thick) is observed within the seamount summit, suggesting that material has extensively erupted as volcaniclastic rocks and high‐porosity basalts. The extrusive/intrusive boundary is depressed beneath the seamount, indicating the absence of an intrusive core. Our results further show that the ratio of extrusive to intrusive volume is as high as 3.0 and that the accretion to the oceanic crust occurs in layer 2. Combined with an analysis of velocity structures of seamounts worldwide including seamounts in the South China Sea, we propose that the extrusive/intrusive ratio and type of crustal thickening are related to the magma supply mechanisms, and intrusive cores are more likely to be associated with a hot spot. The above analysis also suggests that the Longnan Seamount is a nonplume origin seamount and structurally different from other seamounts in the South China Sea. Ridge jumps in the South China Sea increase the duration or amount of volcanism, which could explain seamount structural differences.
Impact of Lake/Reservoir Expansion and Shrinkage on Energy and Water Vapor Fluxes in the Surrounding Area
Authors: Guo Ailun , Liu Shaomin , Zhu Zhongli , Xu Ziwei , Xiao Qing , Ju Qian , Zhang Yuan , Yang Xiaofan 
Published: October 2020

AbstractLakes and reservoirs are important components of freshwater. The expansion and shrinkage of lakes/reservoirs may have impacts on meteorological characteristics and the underlying surface conditions in the surrounding areas, which would further affect energy and water vapor fluxes. In this study, the expansion and shrinkage of the Guanting Reservoir during 2013–2017 were analyzed using remote sensing data. Data collected from the Huailai Remote Sensing Experiment Station were used to analyze the impact of reservoir expansion/shrinkage on energy and water vapor fluxes in the surrounding area. Results showed the annual expansion of the Guanting Reservoir from 2013 to 2017 and a seasonal variation characterized by expansion in spring, shrinkage in summer and autumn, and expansion again in winter was exhibited. Meanwhile, the evapotranspiration (ET) in the surrounding area increased by about 96%, from 446.6 mm in 2013 to 874.7 mm in 2017. In growing season (May to September), the seasonal shrinkage of the reservoir affected ET through net radiation, normalized difference vegetation index (NDVI), and deep soil moisture, while in nongrowing season (January to April and October to December), the seasonal expansion increased ET through the distance between 40‐m tower and the reservoir, net radiation, and surface soil moisture. In addition, with the reservoir expanding year by year, the difference in ET between the closer site and further site from the reservoir increased obviously, especially in the nongrowing season during the seasonal expansion of the reservoir. The findings of this study are beneficial for ecosystem restoration and sustainable development of lakes/reservoirs in arid and semiarid areas.
Arctic Ozone Loss in March 2020 and its Seasonal Prediction in CFSv2: A Comparative Study With the 1997 and 2011 Cases
Authors: Rao Jian , Garfinkel Chaim I. 
Published: October 2020

AbstractUsing reanalysis data, observations, and seasonal forecasts, the March Arctic ozone loss events in 1997, 2011, and 2020 and their predictability are compared. All of the three ozone loss events were accompanied by an extremely strong and cold polar vortex, with the shape and centroid of the ozone loss controlled by the polar vortex. The high autocorrelation of the March Arctic ozone at a lead/lag time of 1–2 months from observations might suggest that a reasonable prediction can be obtained if one initializes 1–2 months in advance. Based on the chemical scheme assessment in CFSv2 and several empirical models using the forecasted metric(s) of the stratospheric polar vortex as predictor(s), the predictability of the 2011 ozone loss event is shown to be longer (1–2 months) than the other two (~1 month), possibly due to a moderate La Niña and quasi‐biennial oscillation westerly winds favorable for the formation of a strong polar vortex. However, the overall predictive skills of ozone from empirical models (using a forecasted substitute index to forecast the Arctic ozone) during 1982–2020 are lower than the chemical module assessment in the forecast system, though empirical models have some skill. Contrary to the ozone predictions, the lower tropospheric temperature pattern in March 2011 is less reasonable than in 1997 and 2020. Similar conclusions are also true in other years (2005 versus 2016). Those findings might indicate a weak relationship between the Arctic ozone and the surface climate in the Northern Hemisphere.
Influence of Dunes on Channel‐Scale Flow and Sediment Transport in a Sand Bed Braided River
Authors: Unsworth Christopher A. , Nicholas Andrew P. , Ashworth Philip J. , Best James L. , Lane Stuart N. , Parsons Daniel R. , Sambrook Smith Gregory H. , Simpson Christopher J. , Strick Robert J. P. 
Published: October 2020

AbstractCurrent understanding of the role that dunes play in controlling bar and channel‐scale processes and river morphodynamics is incomplete. We present results from a combined numerical modeling and field monitoring study that isolates the impact of dunes on depth‐averaged and near‐bed flow structure, with implications for morphodynamic modeling. Numerical simulations were conducted using the three‐dimensional computational fluid dynamics code OpenFOAM to quantify the time‐averaged flow structure within a 400 m × 100 m channel using digital elevation models (DEMs) for which (i) dunes and bars were present within the model and (ii) only bar‐scale topographic features were resolved (dunes were removed). Comparison of these two simulations shows that dunes enhance lateral flows and reduce velocities over bar tops by as much as 30%. Dunes influence the direction of modeled sediment transport at spatial scales larger than individual bedforms due to their effect on topographic steering of the near‐bed flow structure. We show that dunes can amplify, dampen, or even reverse the deflection of sediment down lateral bar slopes, and this is closely associated with 3‐D and obliquely orientated dunes. Sediment transport patterns calculated using theory implemented in depth‐averaged morphodynamic models suggest that gravitational deflection of sediment is still controlled by bar‐scale topography, even in the presence of dunes. However, improved parameterizations of flow and sediment transport in depth‐averaged morphodynamic models are needed that account for the effects of both dune‐ and bar‐scale morphology on near‐bed flow and sediment transport.
Impacts of Assimilation Frequency on Ensemble Kalman Filter Data Assimilation and Imbalances
Authors: He Huan , Lei Lili , Whitaker Jeffrey S. , Tan Zhe‐Min 
Published: October 2020

AbstractThe ensemble Kalman filter (EnKF) has been widely used in atmosphere, ocean, and land applications. The observing network has been significantly developed, and thus, observations with highly dense temporal resolutions have become available. To better extract information from dense temporal observations, one straightforward strategy is to increase the assimilation frequency. However, more frequent assimilation may exacerbate the model imbalance and result in degraded forecasts. To combat the imbalance caused by ensemble‐based data assimilation due to sampling error and covariance localization, three‐ and four‐dimensional incremental analysis update (IAU) were proposed, which gradually introduce the analysis increments into model rather than intermittently updating the state. The trade‐off between the assimilation frequency and imbalance is systematically explored here by using an idealized two‐layer model and the NOAA GFS. Results from the idealized two‐layer model show that increasing assimilation frequency can reduce errors for state variables that are not sensitive to imbalances. For state variable that carries the signal of the external gravity mode and is sensitive to imbalances, increasing assimilation frequency without (with) IAU reduces (increases) errors. Without IAU, more frequent updates result in smaller increments and less insertion noise, while the initialization of IAU cannot effectively mitigate the imbalances with increased assimilation frequency. Results with a low‐resolution version of the NOAA GFS demonstrate that increasing assimilation frequency from 6 to 2 h improves the errors and biases of forecasts verified with conventional and radiance observations, although gravity wave noise in the forecast is increased.
Exposure and Possible Risks of Engineered Nanomaterials in the Environment—Current Knowledge and Directions for the Future
Authors: Wigger Henning , Kägi Ralf , Wiesner Mark , Nowack Bernd 
Published: October 2020

AbstractThe consequences that engineered nanomaterials (ENMs) may cause in the environment have been under investigation for more than 15 years. Hundreds of millions of euros/dollars have been invested into safety issues of ENMs, and much progress has been made in the understanding of their fate and effects in the environment. After an initial phase of “observing the effects,” research has shifted toward elucidating the mechanisms of fate and ecotoxicological effects. This also included a stronger focus on exposure issues and the development of analytical methods and computational models to predict exposure. First environmental risk assessments for ENM were performed, and much progress has been achieved on the way to nanospecific and material‐specific assessments. The release of ENM from products and their transformation in technical and natural compartments profoundly affect the form in which the ENMs are present in the environment. A crucial aspect in all areas isifthere are truly nanospecific issues of the novel‐added functionalities of ENM that are different from dissolved metals, larger particles, or natural particles. This review outlines progress in understanding the environmental dimensions of ENMs and areas that merit further investigation: To what extent are ENMs different from their natural counterparts and how “long” do we need to track them in natural and technical systems? A major challenge will be in developing methods for studying particle‐mediated processes and their effects on ecosystems and organisms in a more general sense, going beyond just ENM, for example, to natural nanoparticles, microplastics, and extracellular vesicles.
Inactivation of ribosomal protein S27-like impairs DNA interstrand cross-link repair by destabilization of FANCD2 and FANCI
Authors: Sun Siyuan , He Hengqian , Ma Yuanyuan , Xu Jie , Chen Guoan , Sun Yi , Xiong Xiufang 
Published: October 2020

AbstractRibosomal protein S27-like (RPS27L), an evolutionarily conserved ribosomal protein and a direct p53 target, plays an important role in maintenance of genome integrity. We have previously reported that RPS27L regulates radiation sensitivity via the MDM2-p53 and MDM2-MRN-ATM axes. Whether and how RPS27L modulates DNA interstrand cross-link (ICL) repair is unknown. Here we identified that RPS27L binds to FANCD2 and FANCI, two Fanconi anemia (FA) proteins functioning in ICL repair pathway. Upon RPS27L knockdown, the levels of FANCD2 and FANCI are reduced due to accelerated degradation via p62-mediated autophagy-lysosome pathway, which is abrogated by chloroquine (CQ) treatment or Beclin 1 knockdown. Biologically, RPS27L knockdown suppresses FANCD2 foci formation and impairs ICL repair upon exposure to ICL-inducing agent mitomycin C (MMC) in lung cancer cells. This effect of MMC sensitization can be partially reversed by CQ treatment. Together, our study shows that RPS27L positively regulates ICL repair by binding with FANCD2 and FANCI to prevent their degradation via autophagy-lysosome system.
Nanoparticle-directed and ionically forced polyphosphate coacervation: a versatile and reversible core–shell system for drug delivery
Authors: Müller Werner E. G. , Tolba Emad , Wang Shunfeng , Neufurth Meik , Lieberwirth Ingo , Ackermann Maximilian , Schröder Heinz C. , Wang Xiaohong 
Published: October 2020

AbstractA drug encapsulation/delivery system using a novel principle is described that is based on an intra-particle migration of calcium ions between a central Ca2+-enriched nanoparticle core and the surrounding shell compartment. The supply of Ca2+ is needed for the formation of a coacervate shell around the nanoparticles, acting as the core of drug-loadable core–shell particles, using the physiological inorganic polymer polyphosphate (polyP). This polyanion has the unique property to form, at an alkaline pH and in the presence of a stoichiometric surplus of calcium ions, water-insoluble and stabile amorphous nanoparticles. At neutral pH a coacervate, the biologically active form of the polymer, is obtained that is composed of polyP and Ca2+. The drug-loaded core–shell particles, built from the Ca–polyP core and the surrounding Ca–polyP shell, were fabricated in two successive steps. First, the formation of the nanoparticle core at pH 10 and a superstoichiometric 2:1 molar ratio between CaCl2 and Na–polyP into which dexamethasone, as a phosphate derivative, was incorporated. Second, the preparation of the coacervate shell, loaded with ascorbic acid, by exposure of the Ca–polyP core to soluble Na–polyP and L-ascorbate (calcium salt). EDX analysis revealed that during this step the Ca2+ ions required for coacervate formation migrate from the Ca–polyP core (with a high Ca:P ratio) to the shell. Electron microscopy of the particles show an electron-dense 150–200 nm sized core surrounded by a less sharply delimited electron-sparse shell. The core–shell particles exhibited strong osteogenic activity in vitro, based on the combined action of polyP and of dexamethasone and ascorbic acid, which reversibly bind to the anionic polyP via ionic Ca2+ bonds. Drug release from the particles occurs after contact with a peptide/protein-containing serum, a process which is almost complete after 10 days and accompanied by the conversion of the nanoparticles into a coacervate. Human osteosarcoma SaOS-2 cells cultivated onto or within an alginate hydrogel matrix showed increased growth/viability and mineralization when the hybrid particles containing dexamethasone and ascorbic acid were embedded in the matrix. The polyP-based core–shell particles have the potential to become a suitable, pH-responsive drug encapsulation/release system, especially for bone, cartilage and wound healing.