bluuebunny/crossref_metadata_2025_split huggingface dataset:
The effect of substrate wettability and modulus on gecko and gecko-inspired synthetic adhesion in variable temperature and humidity
Authors: Mitchell Christopher T. , Dayan Cem Balda , Drotlef Dirk-M. , Sitti Metin , Stark Alyssa Y. 
Published: November 2020

AbstractGecko adhesive performance increases as relative humidity increases. Two primary mechanisms can explain this result: capillary adhesion and increased contact area via material softening. Both hypotheses consider variable relative humidity, but neither fully explains the interactive effects of temperature and relative humidity on live gecko adhesion. In this study, we used live tokay geckos (Gekko gecko) and a gecko-inspired synthetic adhesive to investigate the roles of capillary adhesion and material softening on gecko adhesive performance. The results of our study suggest that both capillary adhesion and material softening contribute to overall gecko adhesion, but the relative contribution of each depends on the environmental context. Specifically, capillary adhesion dominates on hydrophilic substrates, and material softening dominates on hydrophobic substrates. At low temperature (12 °C), both capillary adhesion and material softening likely produce high adhesion across a range of relative humidity values. At high temperature (32 °C), material softening plays a dominant role in adhesive performance at an intermediate relative humidity (i.e., 70% RH).
Coral cover surveys corroborate predictions on reef adaptive potential to thermal stress
Authors: Selmoni Oliver , Lecellier Gaël , Vigliola Laurent , Berteaux-Lecellier Véronique , Joost Stéphane 
Published: November 2020

AbstractAs anomalous heat waves are causing the widespread decline of coral reefs worldwide, there is an urgent need to identify coral populations tolerant to thermal stress. Heat stress adaptive potential is the degree of tolerance expected from evolutionary processes and, for a given reef, depends on the arrival of propagules from reefs exposed to recurrent thermal stress. For this reason, assessing spatial patterns of thermal adaptation and reef connectivity is of paramount importance to inform conservation strategies. In this work, we applied a seascape genomics framework to characterize the spatial patterns of thermal adaptation and connectivity for coral reefs of New Caledonia (Southern Pacific). In this approach, remote sensing of seascape conditions was combined with genomic data from three coral species. For every reef of the region, we computed a probability of heat stress adaptation, and two indices forecasting inbound and outbound connectivity. We then compared our indicators to field survey data, and observed that decrease of coral cover after heat stress was lower at reefs predicted with high probability of adaptation and inbound connectivity. Last, we discussed how these indicators can be used to inform local conservation strategies and preserve the adaptive potential of New Caledonian reefs.
Evaluation of chemotherapy and P2Et extract combination in ex-vivo derived tumor mammospheres from breast cancer patients
Authors: Urueña Claudia , Sandoval Tito A. , Lasso Paola , Tawil Mauricio , Barreto Alfonso , Torregrosa Lilian , Fiorentino Susana 
Published: November 2020

AbstractThe main cause of death by cancer is metastasis rather than local complications of primary tumors. Recent studies suggest that breast cancer stem cells (BCSCs), retains the ability to self-renew and differentiate to repopulate the entire tumor, also, they have been associated with resistance to chemotherapy and tumor recurrence, even after tumor resection. Chemotherapy has been implicated in the induction of resistant phenotypes with highly metastatic potential. Naturally occurring compounds, especially phytochemicals such as P2Et, can target different populations of cancer cells as well as BCSC, favoring the activation of immune response via immunogenic tumor death. Here, we evaluated the presence of BCSC as well as markers related to drug resistance in tumors obtained from 78 patients who had received (or not) chemotherapy before surgery. We evaluated the ex vivo response of patient tumor-derived organoids (or mammospheres) to chemotherapy alone or in combination with P2Et. A xenotransplant model engrafted with MDA-MB-468 was used to evaluate in vivo the activity of P2Et, in this model P2Et delay tumor growth. We show that patients with luminal and TNBC, and those who received neoadjuvant therapy before surgery have a higher frequency of BCSC. Further, the treatment with P2Et in mammospheres and human breast cancer cell lines improve the in vitro tumor death and decrease its viability and proliferation together with the release of immunogenic signals. P2Et could be a good co-adjuvant in antitumor therapy in patients, retarding the tumor growth by enabling the activation of the immune response.
Mathematical modelling of the dynamics and containment of COVID-19 in Ukraine
Authors: Kyrychko Yuliya N. , Blyuss Konstantin B. , Brovchenko Igor 
Published: November 2020

AbstractCOVID-19 disease caused by the novel SARS-CoV-2 coronavirus has already brought unprecedented challenges for public health and resulted in huge numbers of cases and deaths worldwide. In the absence of effective vaccine, different countries have employed various other types of non-pharmaceutical interventions to contain the spread of this disease, including quarantines and lockdowns, tracking, tracing and isolation of infected individuals, and social distancing measures. Effectiveness of these and other measures of disease containment and prevention to a large degree depends on good understanding of disease dynamics, and robust mathematical models play an important role in forecasting its future dynamics. In this paper we focus on Ukraine, one of Europe’s largest countries, and develop a mathematical model of COVID-19 dynamics, using latest data on parameters characterising clinical features of disease. For improved accuracy, our model includes age-stratified disease parameters, as well as age- and location-specific contact matrices to represent contacts. We show that the model is able to provide an accurate short-term forecast for the numbers and age distribution of cases and deaths. We also simulated different lockdown scenarios, and the results suggest that reducing work contacts is more efficient at reducing the disease burden than reducing school contacts, or implementing shielding for people over 60.
Impact of drought associated with high temperatures on Coffea canephora plantations: a case study in Espírito Santo State, Brazil
Authors: Venancio Luan Peroni , Filgueiras Roberto , Mantovani Everardo Chartuni , do Amaral Cibele Hummel , da Cunha Fernando França , dos Santos Silva Francisco Charles , Althoff Daniel , dos Santos Robson Argolo , Cavatte Paulo Cezar 
Published: November 2020

AbstractDroughts are major natural disasters that affect many parts of the world all years and recently affected one of the major conilon coffee-producing regions of the world in state of Espírito Santo, which caused a huge crisis in the sector. Therefore, the objective of this study was to conduct an analysis with technical-scientific basis of the real impact of drought associated with high temperatures and irradiances on the conilon coffee (Coffea canephora Pierre ex Froehner) plantations located in the north, northwest, and northeast regions of the state of Espírito Santo, Brazil. Data from 2010 to 2016 of rainfall, air temperature, production, yield, planted area and surface remote sensing were obtained from different sources, statistically analyzed, and correlated. The 2015/2016 season was the most affected by the drought and high temperatures (mean annual above 26 °C) because, in addition to the adverse weather conditions, coffee plants were already damaged by the climatic conditions of the previous season. The increase in air temperature has higher impact (negative) on production than the decrease in annual precipitation. The average annual air temperatures in the two harvest seasons that stood out for the lowest yields (i.e. 2012/2013 and 2015/2016) were approximately 1 °C higher than in the previous seasons. In addition, in the 2015/2016 season, the average annual air temperature was the highest in the entire series. The spatial and temporal distribution of Enhanced Vegetation Index values enabled the detection and perception of droughts in the conilon coffee-producing regions of Espírito Santo. The rainfall volume accumulated in the periods from September to December and from April to August are the ones that most affect coffee yield. The conilon coffee plantations in these regions are susceptible to new climate extremes, as they continue to be managed under irrigation and full sun. The adoption of agroforestry systems and construction of small reservoirs can be useful to alleviate these climate effects, reducing the risk of coffee production losses and contributing to the sustainability of crops in Espírito Santo.
Power-law scaling to assist with key challenges in artificial intelligence
Authors: Meir Yuval , Sardi Shira , Hodassman Shiri , Kisos Karin , Ben-Noam Itamar , Goldental Amir , Kanter Ido 
Published: November 2020

AbstractPower-law scaling, a central concept in critical phenomena, is found to be useful in deep learning, where optimized test errors on handwritten digit examples converge as a power-law to zero with database size. For rapid decision making with one training epoch, each example is presented only once to the trained network, the power-law exponent increased with the number of hidden layers. For the largest dataset, the obtained test error was estimated to be in the proximity of state-of-the-art algorithms for large epoch numbers. Power-law scaling assists with key challenges found in current artificial intelligence applications and facilitates an a priori dataset size estimation to achieve a desired test accuracy. It establishes a benchmark for measuring training complexity and a quantitative hierarchy of machine learning tasks and algorithms.
Emergent initiation of dialysis is related to an increase in both mortality and medical costs
Authors: Shimizu Yuki , Nakata Junichiro , Yanagisawa Naotake , Shirotani Yuka , Fukuzaki Haruna , Nohara Nao , Suzuki Yusuke 
Published: November 2020

AbstractThe number of patients with end-stage renal disease (ESRD) has been increasing, with dialysis treatment being a serious economic problem. To date, no report in Japan considered medical costs spent at the initiation of dialysis treatment, although some reports in other countries described high medical costs in the first year. This study focused on patient status at the time of initiation of dialysis and examined how it affects prognosis and the medical costs. As a result, all patients dying within 4 months experienced emergent dialysis initiation. Emergent dialysis initiation and high medical costs were risk factors for death within 2 years. High C-reactive protein levels and emergent dialysis initiation were associated with increasing medical costs. Acute kidney injury (AKI) contributed most to emergent dialysis initiation followed by stroke, diabetes, heart failure, and short-term care by nephrologists. Therefore, emergent dialysis initiation was a contributing factor to both death and increasing medical costs. To avoid the requirement for emergent dialysis initiation, patients with ESRD should be referred to nephrologists earlier. Furthermore, ESRD patients with clinical histories of AKI, stroke, diabetes, or heart failure should be observed carefully and provided pre-planned initiation of dialysis.
Rotating and stacking genes can improve crop resistance durability while potentially selecting highly virulent pathogen strains
Authors: Crété Rémi , Pires Rodrigo Neto , Barbetti Martin J. , Renton Michael 
Published: November 2020

AbstractRotating crop cultivars with different resistance genes could slow the evolution of virulent strains of fungal pathogens, but could also produce highly virulent pathogen strains. We present a new model that links polycyclic pathogen epidemiology and population genetics in order to predict how different strategies of rotating cultivars with different resistances will affect the evolution of pathogen virulence and the breakdown of crop resistance. We modelled a situation where there were four different resistance genes that can be deployed within each crop cultivar, and four virulence genes that may be present within the pathogen. We simulated four different rotational management strategies: (i) no rotation; (ii) a different gene every year; (iii) a different gene every 5 years; and (iv) a different combination of two stacked genes each year. Results indicate that rotating cultivars can lead to longer periods of disease suppression but also to the selection of highly virulent strains. The efficacy and relative advantage of different resistant cultivar rotation strategies depended on the fitness penalties, initial virulence allele frequencies, and ability of non-virulent pathogen genotypes to grow and reproduce on resistant cultivars. By capturing the essential processes involved, our model provides a useful new tool for investigating the evolutionary dynamics of pathogen virulence and crop resistance breakdown.
Dyssynergic patterns of defecation in constipated adolescents and young adults with anorectal malformations
Authors: Bjørsum-Meyer Thomas , Christensen Peter , Baatrup Gunnar , Jakobsen Marianne Skytte , Asmussen Jon , Qvist Niels 
Published: November 2020

AbstractWe aimed to evaluate the etiologies of constipation in patients with anorectal malformations having a good prognosis for bowel control but a high risk of constipation. We included twenty-five patients from the Odense university hospital in Denmark. Patients were subjected to colon transit time examination and high resolution anorectal manometry (HRAM). The median age was 18 (14–24) and 48% (12/25) were females. Fifty-two % (13/25) of patients were diagnosed with constipation. Types of anorectal malformation were perineal fistula (9/25), rectovestibular fistula (8/25), rectourethral bulbar fistula (5/25) and no fistula (3/25). No difference in neither total colon transit time nor segmental colon transit times were found based on the presence of constipation. Only four of the constipated patients fulfilled criteria for dyssynergic defecation with a dyssynergic pattern at HRAM and prolonged colon transit time. A Type I dyssynergic pattern was dominant in constipated patients (7/13). A Dyssynergic defecation pattern was due to isolated contraction of puborectalis muscle in 9 out of 13constipated patients. We found a dyssynergic pattern during attempted defecation in patients with anorectal malformations disregarded the presence of constipation. In the majority of constipated patients an isolated contraction of the puborectalis muscle was visualized with HRAM.
Synergy between NIR luminescence and thermal emission toward highly sensitive NIR operating emissive thermometry
Authors: Marciniak Lukasz , Trejgis Karolina , Lisiecki Radosław , Bednarkiewicz Artur 
Published: November 2020

AbstractThere are many figures of merit, which determine suitability of luminescent thermometers for practical applications. These include thermal sensitivity, thermal accuracy as well as ease and cost effectivness of technical implementation. A novel contactless emission thermometer is proposed, which takes advantage of the coexistence of photoluminescence from Nd3+ doping ions and black body emission in transparent Nd3+ doped-oxyfluorotellurite glass host matrix. The opposite temperature dependent emission from these two phenomena, enables to achieve exceptionally high relative sensitivity SR = 8.2%/°C at 220 °C. This enables to develop new type of emissive noncontact temperature sensors.
The effect of Rbfox2 modulation on retinal transcriptome and visual function
Authors: Gu Lei , Kawaguchi Riki , Caprioli Joseph , Piri Natik 
Published: November 2020

AbstractRbfox proteins regulate alternative splicing, mRNA stability and translation. These proteins are involved in neurogenesis and have been associated with various neurological conditions. Here, we analyzed Rbfox2 expression in adult and developing mouse retinas and the effect of its downregulation on visual function and retinal transcriptome. In adult rodents, Rbfox2 is expressed in all retinal ganglion cell (RGC) subtypes, horizontal cells, as well as GABAergic amacrine cells (ACs). Among GABAergic AC subtypes, Rbfox2 was colocalized with cholinergic starburst ACs, NPY (neuropeptide Y)- and EBF1 (early B-cell factor 1)-positive ACs. In differentiating retinal cells, Rbfox2 expression was observed as early as E12 and, unlike Rbfox1, which changes its subcellular localization from cytoplasmic to predominantly nuclear at around P0, Rbfox2 remains nuclear throughout retinal development. Rbfox2 knockout in adult animals had no detectable effect on retinal gross morphology. However, the visual cliff test revealed a significant abnormality in the depth perception of Rbfox2-deficient animals. Gene set enrichment analysis identified genes regulating the RNA metabolic process as a top enriched class of genes in Rbfox2-deficient retinas. Pathway analysis of the top 100 differentially expressed genes has identified Rbfox2-regulated genes associated with circadian rhythm and entrainment, glutamatergic/cholinergic/dopaminergic synaptic function, calcium and PI3K-AKT signaling.
Systematic comparison and assessment of RNA-seq procedures for gene expression quantitative analysis
Authors: Corchete Luis A. , Rojas Elizabeta A. , Alonso-López Diego , De Las Rivas Javier , Gutiérrez Norma C. , Burguillo Francisco J. 
Published: November 2020

AbstractRNA-seq is currently considered the most powerful, robust and adaptable technique for measuring gene expression and transcription activation at genome-wide level. As the analysis of RNA-seq data is complex, it has prompted a large amount of research on algorithms and methods. This has resulted in a substantial increase in the number of options available at each step of the analysis. Consequently, there is no clear consensus about the most appropriate algorithms and pipelines that should be used to analyse RNA-seq data. In the present study, 192 pipelines using alternative methods were applied to 18 samples from two human cell lines and the performance of the results was evaluated. Raw gene expression signal was quantified by non-parametric statistics to measure precision and accuracy. Differential gene expression performance was estimated by testing 17 differential expression methods. The procedures were validated by qRT-PCR in the same samples. This study weighs up the advantages and disadvantages of the tested algorithms and pipelines providing a comprehensive guide to the different methods and procedures applied to the analysis of RNA-seq data, both for the quantification of the raw expression signal and for the differential gene expression.
Functional impacts of the ubiquitin–proteasome system on DNA damage recognition in global genome nucleotide excision repair
Authors: Sakai Wataru , Yuasa-Sunagawa Mayumi , Kusakabe Masayuki , Kishimoto Aiko , Matsui Takeshi , Kaneko Yuki , Akagi Jun-ichi , Huyghe Nicolas , Ikura Masae , Ikura Tsuyoshi , Hanaoka Fumio , Yokoi Masayuki , Sugasawa Kaoru 
Published: November 2020

AbstractThe ubiquitin–proteasome system (UPS) plays crucial roles in regulation of various biological processes, including DNA repair. In mammalian global genome nucleotide excision repair (GG-NER), activation of the DDB2-associated ubiquitin ligase upon UV-induced DNA damage is necessary for efficient recognition of lesions. To date, however, the precise roles of UPS in GG-NER remain incompletely understood. Here, we show that the proteasome subunit PSMD14 and the UPS shuttle factor RAD23B can be recruited to sites with UV-induced photolesions even in the absence of XPC, suggesting that proteolysis occurs at DNA damage sites. Unexpectedly, sustained inhibition of proteasome activity results in aggregation of PSMD14 (presumably with other proteasome components) at the periphery of nucleoli, by which DDB2 is immobilized and sequestered from its lesion recognition functions. Although depletion of PSMD14 alleviates such DDB2 immobilization induced by proteasome inhibitors, recruitment of DDB2 to DNA damage sites is then severely compromised in the absence of PSMD14. Because all of these proteasome dysfunctions selectively impair removal of cyclobutane pyrimidine dimers, but not (6–4) photoproducts, our results indicate that the functional integrity of the proteasome is essential for the DDB2-mediated lesion recognition sub-pathway, but not for GG-NER initiated through direct lesion recognition by XPC.
The effects of repeated inhaler device handling education in COPD patients: a prospective cohort study
Authors: Ahn June Hong , Chung Jin Hong , Shin Kyeong-Cheol , Jin Hyun Jung , Jang Jong Geol , Lee Mi Suk , Lee Kwan Ho 
Published: November 2020

AbstractInhaler education for chronic obstructive pulmonary disease (COPD) patients improves inhaler technique and adherence. However, the effects of such education on the quality of life and inhaler satisfaction remain unclear. Here, we evaluated inhaler handling and adherence, and changes in quality of life and inhaler satisfaction, after repeated education for COPD patients. We prospectively enrolled COPD patients who had used inhalers for over 1 month and evaluated the effects of repeated education. Three visits were made over 6 months; an advanced practice nurse evaluated inhaler technique and adherence, and instructed the patients in inhaler technique during face-to-face sessions. Inhaler technique and adherence were assessed at every visits, and the modified Medical Research Council (mMRC) test, COPD Assessment Test (CAT), EuroQol-5D (EQ-5D), Patient Health Questionnaire (PHQ-9), and Feeling of Satisfaction with Inhaler questionnaire (FSI-10) were administered before (visit 1) and after two educational sessions (visit 3). A total of 261 COPD patients (308 inhalers) were included. Education significantly reduced the proportion of critical errors after two educational sessions (visit 3), from 43.2 to 8.8% (p < 0.001). The proportion of highly compliant patients increased after two visits, from 81.6% to 87.7% (p = 0.005). The FSI-10 score improved significantly after education, from 44.36 ± 4.69 to 47.64 ± 4.08 (p < 0.001); the scores on the other instruments (mMRC, CAT, EQ-5D, and PHQ-9) did not improve. Repeated face-to-face inhaler education by an advanced practice nurse significantly improved inhaler satisfaction, technique, and adherence. However, inhaler education did not significantly improve quality of life.
The state grid corporation of China's practice and outlook for promoting new energy development
Authors: Pan Ersheng , Liu Siwei , Liu Jianqin , Qi Qingru , Guo Zun 
Published: November 2020

AbstractThe rapid development and effective accommodation of new energy gradually became the focus of various sectors of Chinese society in the period of 2011–2020. Based on the State Grid Corporation of China's development of new energy and its accommodation patterns, the mechanisms of new energy accommodation, and the continuous 'double‐decline' effect in recent years, this article analyses a series of measures adopted by State Grid Corporation of China to promote new energy accommodation in China. These measures include guiding scientific grid‐integration of new energy, enhancing the adjusting capability of sources, constructing new energy transmission channels, strengthening source‐grid‐load‐storage coordinated dispatch, realising the full role of the market, and creating a new energy cloud platform. This article looks ahead to the trend and characteristics of the future development of new energy. Furthermore, several recommendations for comprehensive measures for larger‐scale and high‐quality development and accommodation of new energy in the future are also summarized, from the perspectives of flexible operation, cross‐regional accommodation, multi‐energy synergy, market regulation, digital information technology, and co‐action of the government and enterprises.