bluuebunny/crossref_metadata_2025_split huggingface dataset:
Pengaruh dosis bokashi jerami padi sebagai sumber silika (Si) terhadap pertumbuhan dan hasil tiga varietas padi sawah (Oryza sativa L.)
Authors: Birnadi Suryaman , Frasetya Budy , Sundawa Eko Prastio 
Published: December 2019

Penurunan ketersediaan unsur silikon (Si) di dalam tanah berdampak terhadap produktivitas padi, padahal jerami padi merupakan sumber pupuk Si yang memiliki kandungan silika 5-6%. Respons pemupukan silika pada setiap varietas padi berbeda. Penelitian ini bertujuan untuk mengetahui interaksi dan dosis rekomendasi bokashi jerami padi untuk setiap jenis varietas padi yang diteliti. Penelitian menggunakan Rancangan Acak Kelompok Faktorial dua faktor dengan tiga ulangan. Faktor pertama yaitu dosis bokashi jerami (J) terdiri dari 4 taraf yaitu: j0=tanpa bokashi jerami, j1= 7,5 t ha-1 bokashi jerami padi (Si=961,5 kg ha-1), j2=15 t ha-1 bokashi jerami padi (Si=1923 kg ha-1), j3=22,5 t ha-1 bokashi jerami padi (Si=2884,5 kg ha-1). Faktor kedua varietas padi (V) yaitu: v1= Inpari 19, v2= Inpari 13 dan v3= Ciherang. Parameter yang diamati: tinggi tanaman, jumlah anakan, berat gabah 1000 butir, berat gabah per rumpun dan berat gabah per hektar. Data hasil pengamatan dianalisis menggunakan analisis varians pada taraf 5%, dilanjutkan dengan uji beda jarak Duncan pada taraf 5%. Hasil analisis varians menunjukkan terdapat interaksi antara dosis bokashi jerami padi dengan jenis varietas padi pada berat gabah 1000 butir dan pengaruh mandiri terhadap parameter lainnya. Aplikasi bokashi jerami 15 t ha-1 meningkatkan produktivitas tiga varietas padi.ABSTRACTDeclining silicon availability in the soil affects paddy productivity, meanwhile paddy straw as a source of silica contains 5-6% silica. Response of application silica fertilizer is different for each paddy cultivar. This study aimed to determine the interaction and dosage recommendations of paddy straw bokashi for each type of paddy varieties observed. This study used a factorial randomized block design two factors with three replications. The first factor was bokashi paddy straw dose (J) consisted of 4 levels, namely: j0 = without bokashi straw, j1 = 7.5 t ha-1 bokashi rice straw (Si = 961.5 kg ha-1), j2 = 15 t ha- 1 bokashi straw rice (Si = 1923 kg ha-1), j3 = 22.5 t ha-1 bokashi rice straw (Si = 2884.5 kg ha-1). The second factor was paddy cultivar (V), i.e: v1 = Inpari 19, v2 = Inpari 13 and v3 = Ciherang. Parameters observed were plant height, number of tillers, 1000 grains weight, weight of grain per clump, and weight of grain per hectare. The data were analyzed with analysis of variance at the significance level of 5% than continued with Duncan multiple range test at a significant level of 5%. The results showed that there was an interaction between the bokashi doses of paddy straw and the rice varieties on the grain weight of 1000 grains, yet independent effects occured on the other parameters. The application of 15 t ha-1 bokashi straw increases the productivity of three rice varieties.
Efektivitas bintil akar kedelai edemame (Glycine max (L.) Merr.) dengan pemberian TKKS di tailing pasir pasca tambang timah
Authors: Santi Ratna , Aini Sitti Nurul , Alfajri Alfajri 
Published: December 2019

Efektivitas bintil akar kedelai edamame dipengaruhi oleh penggunaan pupuk sebagai sumber energi mikroba. Pemanfaatan kompos tandan kosong kelapa sawit (TKKS) merupakan solusi alternatif pupuk organik. Penelitian ini bertujuan untuk mengetahui pengaruh kompos TKKS terhadap efektivitas bintil akar dan perkembangan fase generatif edamame di tailing pasca tambang timah. Metode penelitian yang digunakan adalah Rancangan Acak Kelompok dengan tiga ulangan. Perlakuan kompos terdiri atas tujuh taraf, yaitu: K0 (tanpa kompos TKKS dan legin), K1 (10 t ha-1), K2 (15 t ha-1), K3 (20 t ha-1), K4 (25 t ha-1), K5 (30 t ha-1)dan Legin. Hasil penelitian penggunaan kompos tandan kosong kelapa sawit dapat meningkatkan efektivitas bintil akar dan perkembangan fase generatif edamame di tailing pasir pasca tambang timah. Persentase bintil akar efektif, jumlah polong dan bobot polong terbanyak pada perlakuan 20 t ha-1. ABSTRACT Edamame soybean nodule effectivity was influenced by the optimalization of fertilizer as a microbial energy sources. Utilization of palm oil empty fruit bunch compost (POEFBC) is an alternative solution for organic fertilizer. This study was to determine the effect of POEFBC on root nodules effectivity and edamame soybean generative stage in sandy tailing post tin mining. Experimental method used Randomized Block Design with three replications. The treatments consist of seven levels i.e. K0 (without POEFBC and legin), K1 (10 t ha-1), K2 (15 t ha-1), K3 (20 t ha-1), K4 (25 t ha-1), K5 (30 t ha-1) and Legin. The results showed that the use of palm oil empty fruit bunches compost can increase the activity of edamame soybean root nodules and develop the generative stage of edamame in sandy tailing post tin mining. The treatment 20 t ha-1 showed the best treatment for the effective percentage of root nodules, number of pods and pod weight.
Karakterisasi Gelembung Renang Ikan Tuna Sirip Kuning (Thunnus sp.) dan Kolagen yang dihasilkan melalui ekstrasi Asam Asetat
Authors: Hadinoto Sugeng , Kolanus Joice P. M. , Idrus Syarifuddin 
Published: December 2019

Gelembung renang dapat dimanfaatkan sebagai bahan baku kolagen karena mempunyai kandungan protein kolagen yang cukup tinggi. Penelitian ini bertujuan untuk mengetahui komposisi kimia gelembung renang ikan tuna sirip kuning dan karakteristik kolagen yang diperoleh melalui ekstraksi menggunakan asam asetat 0,2 M. Gelembung renang ikan tuna sirip kuning diuji kandungan komposisi proksimat, logam berat (Hg, Pb, Cd dan As) dan asam amino. Kuantitas dan kualitas kolagen hasil ekstraksi dilihat melalui parameter rendemen, komposisi proksimat, logam berat, cemaran mikroba dan karakteristik fisikokimia (gugus fungsi, berat molekul, asam amino, dan stabilitas termal). Hasil penelitian menunjukkan bahwa gelembung renang ikan tuna sirip kuning mengandung protein 19,17%, yang didominasi oleh jenis asam amino glisin 5,71 mg/g, arginin 3,72 mg/g dan alanin 3,95 mg/g. Kandungan logam berat gelembung renang masih berada di bawah ambang batas. Ekstraksi kolagen dari gelembung renang ikan tuna sirip kuning menggunakan asam asetat 0,2 M menghasilkan rendemen kolagen sebesar 1,15%. Kolagen yang dihasilkan mengandung protein sebesar 94,14%, yang didominasi oleh asam amino glisin 1957,75 mg/g, arginin 827,96 mg/g dan alanin 825,98 mg/g; tidak terdeteksi logam berat (Hg, Pb, Cd dan As); dan bebas dari cemaran Escherichia coli, Salmonella dan Coliform. Karakteristik gugus fungsi dan berat molekul menunjukkan kolagen yang diperoleh tergolong kolagen Tipe I, dan kolagen yang dihasilkan memiliki kestabilan termal yang tinggi sehingga dapat diaplikasikan pada industri makanan, farmasi dan kosmetik.
Relembrando Suzana Alice Cardoso
Authors: Mota Jacyra Andrade 
Published: December 2019

Este texto traz para esta homenagem realizada pela ANPOLL, em seu XXIV Encontro Nacional, pequenos recortes da vida de Suzana Alice Cardoso, pesquisadora, professora, escritora, colega e amiga, que nos recordam a sua presença marcante nos vários caminhos que percorreu até 2 de maio de 2018, sempre com muita determinação, coragem, competência e sensibilidade.Os recortes se distribuem pela sua vida acadêmica, pela sua atividade como cidadã, pelas suas produções científicas e pelos relatos ficcionais, que se relacionam à sua vida pessoal.
Molla Câmî Tefsiri’nde İşârî Yorumlar
Authors: Ağbal Davut 
Published: December 2019

Abdurrahmân Câmî (ö. 898/1492), XV. yüzyılın çok yönlü
âlimlerindendir. O hem tasavvufun önemli nazariyyatçılarından hem de önde gelen
edebî şahsiyetlerden biri olmasının yanı sıra bir tefsir müellifidir. Bu makale,
Câmî’nin tefsir eserindeki işârî yorumları konu edinmektedir. Bakara 40. âyete
kadar kaleme alınan bu tefsirinde dil tahlillerinin yanı sıra tasavvufî
bahislerin de önemli bir yer işgal ettiği görülmektedir. Bu çalışmada, Molla
Câmî Tefsiri’ndeki işârî yorumların yoğunlaştığı konular ve bu yorumların
sunumunda izlenen yöntemin tespit edilmesi amaçlanmaktadır. Çalışma neticesinde ulaşılan sonuçlara göre;
Câmî, eserinde yer verdiği dil ile ilgili açıklamalar ve temas ettiği konular
bakımından Zemahşerî’nin (ö. 538/1144) Keşşâf’ını esas almakla birlikte
birçok dil ve tefsir âliminin görüşlerine yer vermiştir. Tasavvufî konularda ve
âyetlere getirdiği işârî yorumlarda ise onun bakış açısını belirleyen iki sûfî;
Muhyiddîn İbnü’l-‘Arabî (ö. 638/1240) ve Sadreddîn Konevî’dir (ö. 673/1274).
Câmî, eserinin baş tarafında tasavvufî yorumları, diğer açıklamalarla iç içe
sunarken, Bakara Sûresi’nin ilk beş âyetiyle birlikte bu tür yorumları âyet
tefsirinin sonunda toplamıştır. Âyet metninin arasına yerleştirdiği kısa
açıklamalar şeklinde yaptığı bu yorumlarda vahdet-i vücûd düşüncesinin temel
kavramlarını görmek mümkündür. Bunun yanı sıra onun, tasavvufun âmelî boyutuna
dair açıklamalarına da rastlanılmaktadır.
Morphological and molecular characterization of Fusarium spp. associated to the regional occurrence of wilt and dry bud rot in Agave tequilana
Authors: López-Bautista Viridiana , Mora-Aguilera Gustavo , Gutiérrez-Espinosa María Alejandra , Mendoza-Ramos Coral , Martínez-Bustamante Verónica Inés , Coria-Contreras Juan José , Acevedo-Sánchez Gerardo , Santana-Peñaloza Baldemar 
Published: December 2019

<p>La marchitez y pudrición seca del cogollo del agave (<em>Agave tequilana</em> var. azul) son enfermedades de alto impacto económico para este cultivo. En este trabajo se planteó determinar la implicación de <em>Fusarium</em> spp. en ambas enfermedades bajo un enfoque regional. Se colectaron muestras de raíz y suelo en 40 plantaciones comerciales ubicadas en 13 municipios de Los Altos Jalisco, importante región de cultivo de agave azul en México. De cada plantación de colecta se estimó carga de inóculo mediante un índice de <em>Fusarium</em> obtenido de unidades formadoras de colonias (<em>Fusarium</em> vs hongos totales) y se analizó su relación con pH y materia orgánica. Se obtuvieron 109 aislados caracterizados morfológicamente como <em>Fusarium</em> spp. de los cuales se seleccionaron 25 para identificación molecular con ITS y EF-1a. La selección consideró sintomatología, caracteres macro y microscópicos y prevalencia de tipologías de colonia observadas <em>in vitro</em> en medios Komada, Sabouraud, SNA y CLA. Los caracteres culturales y morfológicos evaluados fueron: coloración micelial, tamaño, forma y septación de macro y microconidios, y longitud y número de fiálides. Se asociaron cinco especies con marchitez y/o pudrición seca ubicadas en tres complejos filogenéticos: <em>F. oxysporum</em> del complejo de especies <em>Fusarium oxysporum</em> (FOSC) con 56% (46.2% suelo y 66.7% raíz) de representatividad regional; <em>F. solani, F. falciforme</em> y <em>Fusarium</em> sp. del complejo <em>Fusarium solani</em> (FSSC) (40%); y <em>Fusarium</em> sp. del complejo <em>Fusarium fujikuroi</em> (FFSC) (4%). MO y pH tuvieron correlación inversamente proporcional con Índice de <em>Fusarium</em> (<em>r2</em> = 0.68-0.70). Se postula que la marchitez y pudrición seca del cogollo de agave azul constituyen un síndrome en el cual se asocian y especializan parasíticamente diversas especies de <em>Fusarium</em>. Se encontró un aislado de los tres complejos de <em>Fusarium</em> asociados específicamente a cada tipo de síntoma y la combinación de ellos. La mayoría se asociaron a marchitez con predominancia de<em> F. oxysporum. </em> </p><p> </p>
Unraveling Disability Participation in Indigenous Peoples
Authors: Yulianti Isnenningtyas , Utomo Nurrahman Aji 
Published: December 2019

Abstract
The issue of disability in indigenous peoples is closely related to the issue of full enjoyment in development and inclusive citizenship. Indigenous peoples have the potential to face discrimination and exclusion from every development from every aspect of life. This condition becomes more vulnerable if it occurs in persons with disabilities. The issue of disability in indigenous peoples, still often neglected in its environment and its own group, and even in the system of society and state. Toraja, Bali, and Maros became the representation of the research area. Based on facts and analyzes, disabilities in indigenous peoples face various layers of discrimination and violations of gender and disability status. The characteristics of indigenous peoples determine the treatment of persons with disabilities in their communities. Most noticeable is the lack of friendly service for persons with disabilities in their own societies. Therefore, people with disabilities in indigenous peoples need open opportunities to participate in customary institutions and emancipation beyond the scope of protection and the fulfillment of rights by the government.
Safety of Use of Tantalum in Total Hip Arthroplasty
Authors: Brüggemann Anders , Mallmin Hans , Bengtsson Mats , Hailer Nils P. 
Published: December 2019

Background:
Tantalum implants have been used in >500,000 orthopaedic patients. Although the risks of metallosis and aseptic lymphocyte-dominated vasculitis-associated lesions (ALVAL) after total hip arthroplasty (THA) are being debated, we are not aware of any studies investigating the liberation of tantalum ions and their potential effects on the immune system. We evaluated whether tantalum concentrations are elevated after THA with acetabular tantalum implants and assessed potential alterations in T-cell subpopulations.

Methods:
After a mean follow-up of 4 years (range, 0.5 to 8.9 years) of 144 patients who had undergone THA, blood samples were analyzed regarding blood tantalum concentrations, total white blood-cell counts, and lymphocyte subsets in 3 groups of patients: those treated with non-tantalum primary THA (“primary non-tantalum,” n = 30), those treated with primary THA with a tantalum cup (“primary tantalum,” n = 30), and those who underwent revision surgery with a tantalum shell (“revision tantalum,” n = 84). Blood donors served as controls for immunological parameters (n = 59). Correlations between tantalum concentrations and human leukocyte antigen (HLA)-DR+ T cells were calculated, radiographic signs of implant loosening were assessed, and the Harris hip score (HHS) was used to evaluate hip function.

Results:
The median tantalum concentration was similar to the detection limit both in the primary non-tantalum group (0.05 µg/L, 95% confidence interval [CI] = 0.05 to 0.05 µg/L) and in the primary tantalum group (0.051 µg/L, 95% CI = 0.050 to 0.055 µg/L), and it was 0.091 µg/L (95% CI = 0.083 to 0.112 µg/L) in the revision tantalum group (p < 0.0001 in the group-wise comparison with both primary non-tantalum and primary tantalum). We found a weak negative correlation of higher tantalum concentration with the concentration of HLA-DR+/CD8+ T cells (r = −0.22, 95% CI = −0.35 to −0.05, p = 0.01) but no correlation of tantalum concentration with the concentration of HLA-DR+/CD4+ T cells (r = −0.11, 95% CI = −0.27 to 0.06, p = 0.24). The values for all lymphocyte subgroups were within normal ranges. No implants were deemed loose. The median HHS was good to excellent.

Conclusions:
Exposure to stable tantalum cups is associated with low blood concentrations of tantalum. Signs of T-cell activation typical of ALVAL seem to be lacking.

Level of Evidence:
Therapeutic Level III. See Instructions for Authors for a complete description of levels of evidence.
Building a geometric part finite element model of one kind of porous structures
Authors: Naprasnikov V. V. , Polozkov J. V. , Borodulya A. V. , Kunkevich D. P. 
Published: December 2019

When creating porous materials, one of the tasks is to increase the insulating properties of products made from such materials. The properties of the porous material depends on the geometry of the pores and their relative position. Another area of use of porous materials is associated with their use for filtration. Thus, it is necessary to be able to obtain the results of virtual tests of the porous structure for the study of fluid flow in this structure or patterns of the distribution of temperature fields in the material.In both cases, to perform the simulation, you must first create the geometric part of the finite element model. Note that in the first problem, the geometric region is the material of the pores, and in the second case, the liquid contained in the pores.
TP53 and PTEN Mutations Were Shared in Concurrent Germ Cell Tumor and Acute Megakaryoblastic Leukemia
Authors: Akizuki Keiichi , Sekine Masaaki , Kogure Yasunori , Kameda Takuro , Shide Kotaro , Koya Junji , Kamiunten Ayako , Kubuki Yoko , Tahira Yuki , Hidara Tomonori , Kiwaki Takumi , Tanaka Hiroyuki , Sato Yuichiro , Kataoka Hiroaki , Kataoka Keisuke , Shimoda Kazuya 
Published: December 2019

Abstract
Background: The occurrence of a mediastinal germ cell tumor (GCT) and hematological malignancy in the same patient is very rare. Due to its rarity, there have been only two reports of the concurrent cases undergoing detailed genetic analysis with whole-exome sequencing (WES), and the possible clonal relationship between the both tumors remained not fully elucidated.Methods: We performed whole-exome sequencing analysis of mediastinal GCT and acute myeloid leukemia (AML) samples obtained from one young Japanese male adult patient with concurrent both tumors, and investigated the possible clonal relationship between them.Results: 16 somatic mutations were detected in the mediastinal GCT sample and 18 somatic mutations in the AML sample. Mutations in nine genes, including TP53 and PTEN both known as tumor suppressor genes, were shared in both tumors.
Conclusions: All in our case and in the previous two cases with concurrent mediastinal GCT and AML undergoing with whole-exome sequencing analysis, TP53 and PTEN mutations were commonly shared in both tumors. These data not only suggest that these tumors share a common founding clone, but also indicate that associated mediastinal GCT and AML harboring TP53 and PTEN mutations represent a unique biological entity.
A Sense of Place: Transcriptomics Identifies Environmental Signatures in Cabernet Sauvignon Berry Skins in the Late Stages of Ripening.
Authors: Cramer Grant R. , Cochetel Noé , Ghan Ryan , Destrac-Irvine Agnès , Delrot Serge 
Published: December 2019

Abstract
Background Grape berry ripening is influenced by climate, the main component of the “terroir” of a place. Light and temperature are major factors in the vineyard that affect berry development and fruit metabolite composition. Results To better understand the effect of “place” on berry ripening, transcript abundances in Cabernet Sauvignon berries grown in Bordeaux were compared to those in Reno during the late stages of berry development at similar berry sugar levels (19 to 26 °Brix, total soluble solids (TSS)). Day lengths were similar in both locations but day temperatures were warmer and night temperatures were cooler in Reno. TSS was lower in Bordeaux berries compared to Reno at maturity levels considered optimum for harvest. RNA-seq analysis identified 4,455 differentially expressed genes (DEGs) between Bordeaux and Reno grape skins at 22°Brix. Top DEG gene ontology categories involved response to stimulus (1464 genes), biosynthesis (1260 genes) and response to stress (834 genes). Some DEGS included genes encoding terpene synthases, cell wall enzymes, kinases, transporters, transcription factors and photoreceptors. Most circadian clock genes had higher transcript abundance in Bordeaux. The plant temperature sensor phytochrome B was linked with Reveille 1 expression, which is part of the circadian clock output pathway that affects seed dormancy. Bordeaux berries had higher transcript abundance with DEGs associated with seed dormancy, light, auxin, ethylene signaling, powdery mildew infection, phenylpropanoid, carotenoid and terpenoid metabolism, whereas Reno berries were enriched with DEGs involved in water deprivation, cold response, ABA signaling and Fe homeostasis. Conclusions Transcript abundance profiles in the berry skins at maturity were highly dynamic. RNA-seq analysis identified a common core set of ripening genes that do not depend on rootstock, vineyard management, plant age, soil and climatic conditions. Most DEGs could be associated with different environmental conditions that affected the berries in the two locations and may be potentially controlled in different ways by the vinegrower to adjust final berry composition and reach a desired result. Temperature, light, water status and fungal infection were identified to be some of the most influential factors that affected differential gene expression and the quality trait pathways associated with them.
High index of suspicion for brucellosis in a highly cosmopolitan city in southern China
Authors: Ye Hai-Yan , Xing Fan-Fan , Yang Jin , Lo Simon Kam-Fai , Lau Ricky Wing-Tong , Chen Jonathan Hon-Kwan , Chiu Kelvin Hei-Yeung , Yuen Kwok-Yung 
Published: December 2019

Abstract
Background: Brucellosis is one of the most widespread zoonosis in the world. In China, 90% of human brucellosis occurs in six northern agricultural provinces. However, there is a recent increase in the trend of human brucellosis in southern provinces with limited cases reported in the literature. Our study aims to describe the clinical features and epidemiology of brucellosis in a tertiary hospital in southern China. Methods: A retrospective case series of brucellosis was conducted between January 1, 2014 and October 31. 2018. Cases were identified based on positive Brucella serology by tube agglutination test, or positive culture from clinical specimen identified by Vitek 2 and MALDL-TOF MS. Clinical details of brucellosis including patients’ occupation, risk factors, and complications were analyzed. Clinical characteristics between patients from Guangdong and other provinces were also compared. Results: A total of 13 cases of laboratory-confirmed brucellosis were identified. 7 (53.8%) of the patients were male, 6 (46.2%) were female, with age ranging from 29 to 73 years old (median age: 51 years). 5 patients (38.5%) were from Guangdong province, while the remaining patients (61.5%) were from other provinces. The commonest risk factors of acquisition were consumption of undercooked meat and goat placenta. Patients from Guangdong province were found to be more likely to have prior placenta consumption. The commonest clinical presentations were fever, osteoarticular pain, urinary symptoms, splenomegaly, and lymphadenopathy. Spondylodiscitis/ peripheral joint arthritis (5 patients, 38.5%) was the most prevalent complication, while extra-osteoarticular complications including abdominal aortitis, hepatosplenic abscess, chest wall abscess, and epididymo-orchitis were observed in 4 other patients. Furthermore, it was demonstrated that MALDI-TOF MS is reliable in Brucella identification after additional of reference spectra with standard Brucella strain.Conclusions: Brucellosis, previously thought to be only found in northern China, is now increasingly seen in highly cosmopolitan part of southern China. MALDI-TOF MS in hospitals in China should include reference spectra with standard Brucella strain to aid bacterial identification in routine clinical practice. In addition to tuberculosis, typhoid fever and typhus, brucellosis should be considered in patients with fever of unknown origin in this locality.