bluuebunny/crossref_metadata_2025_split huggingface dataset:
Deficiency of microRNA-628-5p promotes the progression of gastric cancer by upregulating PIN1
Authors: Chen Yang , Wu Yaran , Yu Shuhui , Yang Hongying , Wang Xiya , Zhang Yali , Zhu Shunqin , Jie Mengmeng , Liu Cheng , Li Xinzhe , Zhou You , Yang Shiming , Yang Yingbin 
Published: July 2020

AbstractGastric cancer is one of the most common cancer and is the second leading cause of cancer-related mortality in the world. PIN1, belonging to peptidyl-prolyl cis-trans isomerase family, uniquely catalyzes the structural transformation of phosphorylated Ser/Thr-Pro motif. It’s high expressed in most cancers and promotes their progression. However, the mechanism of PIN1 high expression and its function in gastric cancer progression are still unclear. In this research, we revealed that PIN1 not only promotes the proliferation and colony formation of gastric cancer, but also increases its migration and invasion. The PIN1 expression in metastasis lesion is usually higher than the corresponding primary site. Inhibiting PIN1 by shRNA suppresses the progression of gastric cancer significantly. Besides, we demonstrated that miR-628-5p is a novel PIN1-targeted microRNA, and the expression of miR-628-5p is negatively correlated with PIN1 in gastric cancer. Exogenous expression of miR-628-5p inhibits the progression of gastric cancer that revered by restoring PIN1 expression. However, miR-628-5p is downregulated in majority of gastric cancer tissue especially in metastasis lesion. The lower miR-628-5p level indicates poorer prognosis. In summary, our study demonstrated that deficient miR-628-5p expression facilitates the expression of PIN1, and consequently promotes the progression of gastric cancer.
Ambient methane functionalization initiated by electrochemical oxidation of a vanadium (V)-oxo dimer
Authors: Deng Jiao , Lin Sheng-Chih , Fuller Jack , Iñiguez Jesus A. , Xiang Danlei , Yang Di , Chan Gary , Chen Hao Ming , Alexandrova Anastassia N. , Liu Chong 
Published: July 2020

AbstractThe abundant yet widely distributed methane resources require efficient conversion of methane into liquid chemicals, whereas an ambient selective process with minimal infrastructure support remains to be demonstrated. Here we report selective electrochemical oxidation of CH4to methyl bisulfate (CH3OSO3H) at ambient pressure and room temperature with a molecular catalyst of vanadium (V)-oxo dimer. This water-tolerant, earth-abundant catalyst possesses a low activation energy (10.8 kcal mol‒1) and a high turnover frequency (483 and 1336 hr−1at 1-bar and 3-bar pure CH4, respectively). The catalytic system electrochemically converts natural gas mixture into liquid products under ambient conditions over 240 h with a Faradaic efficiency of 90% and turnover numbers exceeding 100,000. This tentatively proposed mechanism is applicable to other d0early transition metal species and represents a new scalable approach that helps mitigate the flaring or direct emission of natural gas at remote locations.
Microbial diversity drives carbon use efficiency in a model soil
Authors: Domeignoz-Horta Luiz A. , Pold Grace , Liu Xiao-Jun Allen , Frey Serita D. , Melillo Jerry M. , DeAngelis Kristen M. 
Published: July 2020

AbstractEmpirical evidence for the response of soil carbon cycling to the combined effects of warming, drought and diversity loss is scarce. Microbial carbon use efficiency (CUE) plays a central role in regulating the flow of carbon through soil, yet how biotic and abiotic factors interact to drive it remains unclear. Here, we combine distinct community inocula (a biotic factor) with different temperature and moisture conditions (abiotic factors) to manipulate microbial diversity and community structure within a model soil. While community composition and diversity are the strongest predictors of CUE, abiotic factors modulated the relationship between diversity and CUE, with CUE being positively correlated with bacterial diversity only under high moisture. Altogether these results indicate that the diversity × ecosystem-function relationship can be impaired under non-favorable conditions in soils, and that to understand changes in soil C cycling we need to account for the multiple facets of global changes.
Prevalence and socio-demographic correlates of poor sleep quality among older adults in Hebei province, China
Authors: Zhang Yun-Shu , Jin Yu , Rao Wen-Wang , Jiang Yuan-Yuan , Cui Li-Jun , Li Jian-Feng , Li Lin , Ungvari Gabor S. , Ng Chee H. , Li Ke-Qing , Xiang Yu-Tao 
Published: July 2020

AbstractPoor sleep quality is associated with negative health outcomes and high treatment burden. This study investigated the prevalence of poor sleep quality and its socio-demographic correlates among older adults in Hebei province, which is a predominantly agricultural region of China. A large-scale cross-sectional epidemiological survey was conducted from April to August 2016. The study used a multistage, stratified, cluster random sampling method. Sleep quality was assessed by the Pittsburgh Sleep Quality Index (PSQI). A total of 3,911 participants were included. The prevalence of poor sleep quality (defined as PSQI > 7) was 21.0% (95% CI 19.7–22.2%), with 22.3% (95% CI 20.9–23.8%) in rural areas and 15.9% (95% CI 13.4–18.4%) in urban areas. Multivariable logistic regression analyses found that female gender (P < 0.001, OR 2.4, 95% CI 2.00–2.82), rural areas (P = 0.002, OR 1.5, 95% CI 1.14–1.86), presence of major medical conditions (P < 0.001, OR 2.4, 95% CI 2.02–2.96) and family history of psychiatric disorders (P < 0.001, OR 2.7, 95% CI 1.60–4.39) were independently associated with higher risk of poor sleep quality. Poor sleep quality was common among older adults in Hebei province of China. Regular assessment of sleep quality and accessible sleep treatments for older population should be provided in agricultural areas of China.
PI3K-targeting strategy using alpelisib to enhance the antitumor effect of paclitaxel in human gastric cancer
Authors: Kim Kui-Jin , Kim Ji-Won , Sung Ji Hea , Suh Koung Jin , Lee Ji Yun , Kim Se Hyun , Lee Jeong-Ok , Kim Jin Won , Kim Yu Jung , Kim Jee Hyun , Bang Soo-Mee , Lee Jong Seok , Kim Hark Kyun , Lee Keun-Wook 
Published: July 2020

AbstractPIK3CA mutations are frequently observed in various human cancers including gastric cancer (GC). This study was conducted to investigate the anti-tumor effects of alpelisib, a PI3K p110α-specific inhibitor, using preclinical models of GC. In addition, the combined effects of alpelisib and paclitaxel on GC were evaluated. Among the SNU1, SNU16, SNU484, SNU601, SNU638, SNU668, AGS, and MKN1 GC cells, three PIK3CA-mutant cells were predominantly sensitive to alpelisib. Alpelisib monotherapy decreased AKT and S6K1 phosphorylation and induced G0/G1 phase arrest regardless of PIK3CA mutational status. The alpelisib and paclitaxel combination demonstrated synergistic anti-proliferative effects, preferentially on PIK3CA-mutant cells, resulting in increased DNA damage response and apoptosis. In addition, alpelisib and paclitaxel combination potentiated anti-migratory activity in PIK3CA-mutant cells. Alpelisib partially reversed epithelial–mesenchymal transition markers in PIK3CA-mutant cells. In a xenograft model of MKN1 cells, the alpelisib and paclitaxel combination significantly enhanced anti-tumor activity by decreasing Ki-67 expression and increasing apoptosis. Moreover, this combination tended to prolong the survival of tumor-bearing mice. Our data suggest promising anti-tumor efficacy of alpelisib alone or in combination with paclitaxel in PIK3CA-mutant GC cells.
Contribution of plant-induced pressurized flow to CH4 emission from a Phragmites fen
Authors: van den Berg Merit , van den Elzen Eva , Ingwersen Joachim , Kosten Sarian , Lamers Leon P. M. , Streck Thilo 
Published: July 2020

AbstractThe widespread wetland species Phragmites australis (Cav.) Trin. ex Steud. has the ability to transport gases through its stems via a pressurized flow. This results in a high oxygen (O2) transport to the rhizosphere, suppressing methane (CH4) production and stimulating CH4 oxidation. Simultaneously CH4 is transported in the opposite direction to the atmosphere, bypassing the oxic surface layer. This raises the question how this plant-mediated gas transport in Phragmites affects the net CH4 emission. A field experiment was set-up in a Phragmites-dominated fen in Germany, to determine the contribution of all three gas transport pathways (plant-mediated, diffusive and ebullition) during the growth stage of Phragmites from intact vegetation (control), from clipped stems (CR) to exclude the pressurized flow, and from clipped and sealed stems (CSR) to exclude any plant-transport. Clipping resulted in a 60% reduced diffusive + plant-mediated flux (control: 517, CR: 217, CSR: 279 mg CH4 m−2 day−1). Simultaneously, ebullition strongly increased by a factor of 7–13 (control: 10, CR: 71, CSR: 126 mg CH4 m−2 day−1). This increase of ebullition did, however, not compensate for the exclusion of pressurized flow. Total CH4 emission from the control was 2.3 and 1.3 times higher than from CR and CSR respectively, demonstrating the significant role of pressurized gas transport in Phragmites-stands.
Cardioprotective effects of miR-34a silencing in a rat model of doxorubicin toxicity
Authors: Piegari Elena , Cozzolino Anna , Ciuffreda Loreta Pia , Cappetta Donato , De Angelis Antonella , Urbanek Konrad , Rossi Francesco , Berrino Liberato 
Published: July 2020

AbstractCardiotoxicity remains a serious problem in anthracycline-treated oncologic patients. Therapeutic modulation of microRNA expression is emerging as a cardioprotective approach in several cardiovascular pathologies. MiR-34a increased in animals and patients exposed to anthracyclines and is involved in cardiac repair. In our previous study, we demonstrated beneficial effects of miR-34a silencing in rat cardiac cells exposed to doxorubicin (DOXO). The aim of the present work is to evaluate the potential cardioprotective properties of a specific antimiR-34a (Ant34a) in an experimental model of DOXO-induced cardiotoxicity. Results indicate that in our model systemic administration of Ant34a completely silences miR-34a myocardial expression and importantly attenuates DOXO-induced cardiac dysfunction. Ant34a systemic delivery in DOXO-treated rats triggers an upregulation of prosurvival miR-34a targets Bcl-2 and SIRT1 that mediate a reduction of DOXO-induced cardiac damage represented by myocardial apoptosis, senescence, fibrosis and inflammation. These findings suggest that miR-34a therapeutic inhibition may have clinical relevance to attenuate DOXO-induced toxicity in the heart of oncologic patients.
Immune expression signatures as candidate prognostic biomarkers of age and gender survival differences in cutaneous melanoma
Authors: Kim Yi-Jun , Kim Kyubo , Lee Kye Hwa , Kim Jiyoung , Jung Wonguen 
Published: July 2020

AbstractThis study aims to investigate the difference of gene expression and its prognostic significance in younger women with melanoma. Significantly upregulated genes in tumors compared to normal skin tissues were extracted. Among these genes, genes that significantly affected survival according to expression level were selected, and pathway annotation was performed. The patient proportion with high/low expression of the most significant pathways was analyzed in each age (< 50, 50–59, ≥ 60) and gender group. Survival was analyzed according to age, gender, and pathways. The most significant pathways that were upregulated in tumor tissues and also had impacts on survival were programmed cell death protein [PD]-1, interferon-γ, and interferon-α/β pathways. In women, the immune signaling rate in patients was higher than men and decreased with age (63.5%, 53.8%, and 47.6%). In men, the decreasing tendency was minimal (47.6%, 50.0%, and 41.6%). In patients aged < 60 years, women had a favorable survival rate than men (p = 0.055). Except for patients with high immune signaling, no survival difference was observed between genders (p = 0.6). In conclusion, younger female melanoma patients had high immune signaling than older women and men. This immune signaling improved survival of the younger female patients.
Sources of solutes and carbon cycling in perennially ice-covered Lake Untersee, Antarctica
Authors: Marsh Nicole B. , Lacelle Denis , Faucher Benoit , Cotroneo Sarina , Jasperse Liam , Clark Ian D. , Andersen Dale T. 
Published: July 2020

AbstractPerennially ice-covered lakes that host benthic microbial ecosystems are present in many regions of Antarctica. Lake Untersee is an ultra-oligotrophic lake that is substantially different from any other lakes on the continent as it does not develop a seasonal moat and therefore shares similarities to sub-glacial lakes where they are sealed to the atmosphere. Here, we determine the source of major solutes and carbon to Lake Untersee, evaluate the carbon cycling and assess the metabolic functioning of microbial mats using an isotope geochemistry approach. The findings suggest that the glacial meltwater recharging the closed-basin and well-sealed Lake Untersee largely determines the major solute chemistry of the oxic water column with plagioclase and alumino-silicate weathering contributing < 5% of the Ca2+–Na+ solutes to the lake. The TIC concentration in the lake is very low and is sourced from melting of glacial ice and direct release of occluded CO2 gases into the water column. The comparison of δ13CTIC of the oxic lake waters with the δ13C in the top microbial mat layer show no fractionation due to non-discriminating photosynthetic fixation of HCO3– in the high pH and carbon-starved water. The 14C results indicate that phototrophs are also fixing respired CO2 from heterotrophic metabolism of the underlying microbial mats layers. The findings provide insights into the development of collaboration in carbon partitioning within the microbial mats to support their growth in a carbon-starved ecosystem.
Presence of intrinsically disordered proteins can inhibit the nucleation phase of amyloid fibril formation of Aβ(1–42) in amino acid sequence independent manner
Authors: Ikeda Koki , Suzuki Shota , Shigemitsu Yoshiki , Tenno Takeshi , Goda Natsuko , Oshima Atsunori , Hiroaki Hidekazu 
Published: July 2020

AbstractThe molecular shield effect was studied for intrinsically disordered proteins (IDPs) that do not adopt compact and stable protein folds. IDPs are found among many stress-responsive gene products and cryoprotective- and drought-protective proteins. We recently reported that some fragments of human genome-derived IDPs are cryoprotective for cellular enzymes, despite a lack of relevant amino acid sequence motifs. This sequence-independent IDP function may reflect their molecular shield effect. This study examined the inhibitory activity of IDPs against fibril formation in an amyloid beta peptide (Aβ(1–42)) model system. Four of five human genome-derived IDPs (size range 20 to 44 amino acids) showed concentration-dependent inhibition of amyloid formation (IC50 range between 60 and 130 μM against 20 μM Aβ(1–42)). The IC50 value was two orders of magnitude lower than that of polyethylene-glycol and dextran, used as neutral hydrophilic polymer controls. Nuclear magnetic resonance with 15 N-labeled Aβ(1–42) revealed no relevant molecular interactions between Aβ(1–42) and IDPs. The inhibitory activities were abolished by adding external amyloid-formation seeds. Therefore, IDPs seemed to act only at the amyloid nucleation phase but not at the elongation phase. These results suggest that IDPs (0.1 mM or less) have a molecular shield effect that prevents aggregation of susceptible molecules.
Effects of bacterial lipopolysaccharides on platelet function: inhibition of weak platelet activation
Authors: Martyanov Alexey A. , Maiorov Aleksandr S. , Filkova Aleksandra A. , Ryabykh Alexander A. , Svidelskaya Galina S. , Artemenko Elena O. , Gambaryan Stepan P. , Panteleev Mikhail A. , Sveshnikova Anastasia N. 
Published: July 2020

AbstractPlatelets are anucleate blood cells with reported roles in hemostasis and immune responses, which possess a functional receptor for bacterial lipopolysaccharides (LPSs), the well-known inducers of inflammation. However, LPSs effects on platelets are contradictory. Here we aim to investigate mechanisms of platelet functioning in the presence of LPS and to find the cause of the discrepancy in the previously published data. Cell activity was analyzed by flow cytometry, western blotting, and aggregometry. Thrombus growth was assessed by fluorescent microscopy. LPS' activity was checked by their capability to induce PMN activation. However, LPSs did not substantially affect either thrombus growth in flow chambers, irreversible platelet aggregation, or platelet responses to strong activation. Platelet aggregation in response to 1 μM of ADP was significantly inhibited by LPSs. Flow cytometry analysis revealed that platelet activation responses to weak stimulation were also diminished by LPSs, while VASP phosphorylation was weakly increased. Additionally, LPSs were capable of inhibition of ADP-induced P2-receptor desensitization. Incubation of platelets with a pan-PDE inhibitor IBMX significantly enhanced the LPSs-induced platelet inhibition, implying cAMP/cGMP dependent mechanism. The discrepancy in the previously published data could be explained by LPS-induced weak inhibition of platelet activation and the prevention of platelet desensitization.
Biases in estimation of insect herbivory from herbarium specimens
Authors: Kozlov Mikhail V. , Sokolova Irina V. , Zverev Vitali , Egorov Alexander A. , Goncharov Mikhail Y. , Zvereva Elena L. 
Published: July 2020

AbstractInformation regarding plant damage by insects in the past is essential to explore impacts of climate change on herbivory. We asked whether insect herbivory measured from herbarium specimens reflects the levels of herbivory occurring in nature at the time of herbarium sampling. We compared herbivory measurements between herbarium specimens collected by botany students and ecological samples collected simultaneously by the authors by a method that minimized unconscious biases, and asked herbarium curators to select one of two plant specimens, which differed in leaf damage, for their collections. Both collectors and curators generally preferred specimens with lesser leaf damage, but the strength of this preference varied among persons. In addition, the differences in measured leaf damage between ecological samples and herbarium specimens varied among plant species and increased with the increase in field herbivory. Consequently, leaf damage in herbarium specimens did not correlate with the actual level of herbivory. We conclude that studies of herbarium specimens produce biased information on past levels of herbivory, because leaf damage measured from herbarium specimens not only underestimates field herbivory, but it is not proportional to the level of damage occurring in nature due to multiple factors that cannot be controlled in data analysis.
TaqMan-MGB probe quantitative PCR assays to genotype and quantify three mtDNA mutations of Leber hereditary optic neuropathy
Authors: Xue Bingqian , Li Yang , Wang Xin , Li Rui , Zeng Xin , Yang Meihua , Xu Xiaohui , Ye Tingbo , Bao Liming , Huang Yi 
Published: July 2020

AbstractLeber hereditary optic neuropathy (LHON) is a degenerative disease of the optic nerve associated with one of three mitochondrial DNA (mtDNA) m.3460G>A, m.11778G>A and m.14484T>C mutations. Although several procedures are available to genotype these mutations, quantitative approaches with rapid, low-cost and easy to handle advantages for three LHON mtDNA mutations are rarely reported. Here, we firstly developed a “one-step” tetra-primer amplification-refractory mutation system (T-ARMS) PCR for qualitative genotyping of three LHON mtDNA mutations. Subsequently, we established single, duplex and triplex TaqMan MGB probe-based fluorescence quantitative PCR (qPCR) assays to perform both qualitative and quantitative analyses of three LHON mtDNA mutations. Standard curves based on tenfold diluted plasmid standard exhibited high specificity and sensitivity, stable repeatability and reliable detectable ability of TaqMan probe qPCR assays without cross-reactivity upon probes combination. Moreover, by comparing with SYBR Green qPCR, we further validated the feasibility of the triplex-probe qPCR assay for the quantitative detection of mtDNA copy number in blood samples. In conclusion, our study describes a rapid, low-cost, easy to-handle, and high-throughput TaqMan-MGB probe qPCR assay to perform both qualitative and quantitative analysis of three primary LHON mtDNA mutations, offering a promising approach for genetic screening and testing of LHON mutations.
Time-saving method for directly amplifying and capturing a minimal amount of pancreatic tumor-derived mutations from fine-needle aspirates using digital PCR
Authors: Ono Yusuke , Hayashi Akihiro , Maeda Chiho , Suzuki Mayumi , Wada Reona , Sato Hiroki , Kawabata Hidemasa , Okada Tetsuhiro , Goto Takuma , Karasaki Hidenori , Mizukami Yusuke , Okumura Toshikatsu 
Published: July 2020

AbstractIt is challenging to secure a cytopathologic diagnosis using minute amounts of tumor fluids and tissue fragments. Hence, we developed a rapid, accurate, low-cost method for detecting tumor cell-derived DNA from limited amounts of specimens and samples with a low tumor cellularity, to detect KRAS mutations in pancreatic ductal carcinomas (PDA) using digital PCR (dPCR). The core invention is based on the suspension of tumor samples in pure water, which causes an osmotic burst; the crude suspension could be directly subjected to emulsion PCR in the platform. We examined the feasibility of this process using needle aspirates from surgically resected pancreatic tumor specimens (n = 12). We successfully amplified and detected mutant KRAS in 11 of 12 tumor samples harboring the mutation; the positive mutation frequency was as low as 0.8%. We used residual specimens from fine-needle aspiration/biopsy and needle flush processes (n = 10) for method validation. In 9 of 10 oncogenic KRAS pancreatic tumor samples, the "water-burst" method resulted in a positive mutation call. We describe a dPCR-based, super-sensitive screening protocol for determining KRAS mutation availability using tiny needle aspirates from PDAs processed using simple steps. This method might enable pathologists to secure a more accurate, minimally invasive diagnosis using minute tissue fragments.
Growth dynamics of galls and chemical defence response of Pinus thunbergii Parl. to the pine needle gall midge, Thecodiplosis japonensis Uchida & Inouye (Diptera: Cecidomyiidae)
Authors: Qi Yukun , Duan Chunhua , Ren Lili , Wu Haiwei 
Published: July 2020

AbstractThe pine needle gall midge, Thecodiplosis japonensis Uchida et Inouye, is a newly invasive pest in China that mainly harms Pinus thunbergii and P. densiflora. The occurrence and damage caused by T. japonensis in pure stands of P. thunbergii were investigated, and the needle growth and needle compound content were measured. Based on the above steps, the growth dynamics of galls and chemical defense response of P. thunbergii to attack by the gall midge were revealed. The results showed that the adults of T. japonensis in Qingdao city, China, emerged from the end of May to late July, with a peak in mid-June. Needles of P. thunbergii began to differentiate in late June and stopped growing in mid-September. The length of infested needles was 60.17% less than that of healthy needles. On average, there were 9 ± 4 larvae in each gall, 22 at most and 1 at least. The number of larvae within a gall had no significant effect on the size of the gall or larvae. Compared with that in the ungalled tissues, the content of amino acids in the galled pine needle tissues increased by 40.83%, while the content of total polyphenols, tannins, carotenoids, total triterpenes, total alkaloids and other secondary substances decreased to varying degrees, which was favourable for the growth and development of the T. japonensis larvae.