bluuebunny/crossref_metadata_2025_split huggingface dataset:
LIN28B affects gene expression at the hypothalamic-pituitary axis and serum testosterone levels
Authors: Leinonen Jaakko T. , Chen Yu-Chia , Pennonen Jana , Lehtonen Leevi , Junna Nella , Tukiainen Taru , Panula Pertti , Widén Elisabeth 
Published: December 2019

AbstractGenome-wide association studies (GWAS) have recurrently associated sequence variation nearby LIN28B with pubertal timing, growth and disease. However, the biology linking LIN28B with these traits is still poorly understood. With our study, we sought to elucidate the mechanisms behind the LIN28B associations, with a special focus on studying LIN28B function at the hypothalamic-pituitary (HP) axis that is ultimately responsible for pubertal onset. Using CRISPR-Cas9 technology, we first generated lin28b knockout (KO) zebrafish. Compared to controls, the lin28b KO fish showed both accelerated growth tempo, reduced adult size and increased expression of mitochondrial genes during larval development. Importantly, data from the knockout zebrafish models and adult humans imply that LIN28B expression has potential to affect gene expression in the HP axis. Specifically, our results suggest that LIN28B expression correlates positively with the expression of ESR1 in the hypothalamus and POMC in the pituitary. Moreover, we show how the pubertal timing advancing allele (T) for rs7759938 at the LIN28B locus associates with higher testosterone levels in the UK Biobank data. Overall, we provide novel evidence that LIN28B contributes to the regulation of sex hormone pathways, which might help explain why the gene associates with several distinct traits.
Regulation of vanillate and syringate catabolism by a MarR-type transcriptional regulator DesR in Sphingobium sp. SYK-6
Authors: Araki Takuma , Umeda Shusuke , Kamimura Naofumi , Kasai Daisuke , Kumano Shuta , Abe Tomokuni , Kawazu Chika , Otsuka Yuichiro , Nakamura Masaya , Katayama Yoshihiro , Fukuda Masao , Masai Eiji 
Published: December 2019

AbstractVanillate and syringate are major intermediate metabolites generated during the microbial degradation of lignin. In Sphingobium sp. SYK-6, vanillate is O demethylated to protocatechuate by LigM; protocatechuate is then catabolized via the protocatechuate 4,5-cleavage pathway. Syringate is O demethylated to gallate by consecutive reactions catalyzed by DesA and LigM, and then gallate is subjected to ring cleavage by DesB. Here, we investigated the transcriptional regulation of desA, ligM, and desB involved in vanillate and syringate catabolism. Quantitative reverse transcription-PCR analyses indicated that the transcription of these genes was induced 5.8–37-fold in the presence of vanillate and syringate. A MarR-type transcriptional regulator, SLG_12870 (desR), was identified as the gene whose product bound to the desB promoter region. Analysis of a desR mutant indicated that the transcription of desB, ligM, and desR is negatively regulated by DesR. Purified DesR bound to the upstream regions of desB, ligM, and desR, and the inverted repeat sequences similar to each other in these regions were suggested to be essential for DNA binding of DesR. Vanillate and syringate inhibited DNA binding of DesR, indicating that these compounds are effector molecules of DesR. The transcription of desA was found to be regulated by an as-yet unidentified regulator.
Prediction of leukocyte counts during paediatric acute lymphoblastic leukaemia maintenance therapy
Authors: Karppinen Santeri , Lohi Olli , Vihola Matti 
Published: December 2019

AbstractMaintenance chemotherapy with oral 6-mercaptopurine and methotrexate remains a cornerstone of modern therapy for acute lymphoblastic leukaemia. The dosage and intensity of therapy are based on surrogate markers such as peripheral blood leukocyte and neutrophil counts. Dosage based leukocyte count predictions could provide support for dosage decisions clinicians face trying to find and maintain an appropriate dosage for the individual patient. We present two Bayesian nonlinear state space models for predicting patient leukocyte counts during the maintenance therapy. The models simplify some aspects of previously proposed models but allow for some extra flexibility. Our second model is an extension which accounts for extra variation in the leukocyte count due to a treatment adversity, infections, using C-reactive protein as a surrogate. The predictive performances of our models are compared against a model from the literature using time series cross-validation with patient data. In our experiments, our simplified models appear more robust and deliver competitive results with the model from the literature.
Impact of Q-Griffithsin anti-HIV microbicide gel in non-human primates: In situ analyses of epithelial and immune cell markers in rectal mucosa
Authors: Günaydın Gökçe , Edfeldt Gabriella , Garber David A. , Asghar Muhammad , Noȅl-Romas Laura , Burgener Adam , Wählby Carolina , Wang Lin , Rohan Lisa C. , Guenthner Patricia , Mitchell James , Matoba Nobuyuki , McNicholl Janet M. , Palmer Kenneth E. , Tjernlund Annelie , Broliden Kristina 
Published: December 2019

AbstractNatural-product derived lectins can function as potent viral inhibitors with minimal toxicity as shownin vitroand in small animal models. We here assessed the effect of rectal application of an anti-HIV lectin-based microbicide Q-Griffithsin (Q-GRFT) in rectal tissue samples from rhesus macaques. E-cadherin+cells, CD4+cells and total mucosal cells were assessed usingin situstaining combined with a novel customized digital image analysis platform. Variations in cell numbers between baseline, placebo and Q-GRFT treated samples were analyzed using random intercept linear mixed effect models. The frequencies of rectal E-cadherin+cells remained stable despite multiple tissue samplings and Q-GRFT gel (0.1%, 0.3% and 1%, respectively) treatment. Whereas single dose application of Q-GRFT did not affect the frequencies of rectal CD4+cells, multi-dose Q-GRFT caused a small, but significant increase of the frequencies of intra-epithelial CD4+cells (placebo: median 4%; 1% Q-GRFT: median 7%) and of the CD4+lamina propria cells (placebo: median 30%; 0.1–1% Q-GRFT: median 36–39%). The resting time between sampling points were further associated with minor changes in the total and CD4+rectal mucosal cell levels. The results add to general knowledge ofin vivoevaluation of anti-HIV microbicide application concerning cellular effects in rectal mucosa.
Chest CTA in children younger than two years – a retrospective comparison of three contrast injection protocols
Authors: Nagy Eszter , Tschauner Sebastian , Marterer Robert , Riedl Regina , Sorantin Erich 
Published: December 2019

AbstractTo obtain the highest diagnostic information with least side effects when performing thoracic CT angiography (CTA) is challenging in young children. The current study aims to compare three contrast agent (CA) injection protocols regarding image quality and CA characteristic: a standard CTA, a fixed-bolus delay protocol, and the “microbolus technique (MBT)” developed in our institution. Seventy chest CTA scans of patients (<2 years) were divided into three groups. MBT was applied in group I, the standard protocol in group II and a fixed bolus delay in group III. Objective image quality was assessed by measuring peak enhancement, image noise, signal-to-noise (SNR) and contrast-to-noise ratios (CNR). Two observers scored subjective image quality and artifacts. Significantly lower amounts of CA (mean ± SD) were used in the MBT group compared to Group II (9.0 ± 3.7 ml vs. 12.9 ± 4.5 ml). A lower, but still diagnostic (>400 HU) enhancement was registered in all major thoracic vessels in group I without significant differences regarding SNR and CNR in most regions (p < 0.05). The best scores for image quality and artifacts were reached in group I. All three chest CTA contrast injection protocols offered diagnostic vessel enhancement in young patients. MBT was associated with reduced image artifacts and less injected CA.
Three-Dimensional Printing of a LiFePO4/Graphite Battery Cell via Fused Deposition Modeling
Authors: Maurel Alexis , Grugeon Sylvie , Fleutot Benoît , Courty Matthieu , Prashantha Kalappa , Tortajada Hugues , Armand Michel , Panier Stéphane , Dupont Loïc 
Published: December 2019

AbstractAmong the 3D-printing technologies, fused deposition modeling (FDM) represents a promising route to enable direct incorporation of the battery within the final 3D object. Here, the preparation and characterization of lithium iron phosphate/polylactic acid (LFP/PLA) and SiO2/PLA 3D-printable filaments, specifically conceived respectively as positive electrode and separator in a lithium-ion battery is reported. By means of plasticizer addition, the active material loading within the positive electrode is raised as high as possible (up to 52 wt.%) while still providing enough flexibility to the filament to be printed. A thorough analysis is performed to determine the thermal, electrical and electrochemical effect of carbon black as conductive additive in the positive electrode and the electrolyte uptake impact of ceramic additives in the separator. Considering both optimized filaments composition and using our previously reported graphite/PLA filament for the negative electrode, assembled and “printed in one-shot” complete LFP/Graphite battery cells are 3D-printed and characterized. Taking advantage of the new design capabilities conferred by 3D-printing, separator patterns and infill density are discussed with a view to enhance the liquid electrolyte impregnation and avoid short-circuits.
Renin Angiotensin Aldosterone System Blockades Does Not Protect Residual Renal Function in Patients with Hemodialysis at 1 Year After Dialysis Initiation: A Prospective Observational Cohort Study
Authors: Yoo Kyung Don , Kim Clara Tammy , Kwon Soie , Lee Jeonghwan , Oh Yun Kyu , Kang Shin-Wook , Yang Chul Woo , Kim Yong-Lim , Kim Yon Su , Lim Chun Soo , Lee Jung Pyo 
Published: December 2019

AbstractThe beneficial effects of renin angiotensin aldosterone system (RAAS) blockade on residual renal function (RRF) in patients who have just initiated hemodialysis (HD) have been inconclusive. In this study, 935 patients with incident HD from a nationwide prospective observational cohort in Korea were included for analysis. The primary outcome showed that RRF as demonstrated by urine volume changes over 0, 3, and 12 months differed between the RAAS blockade and control groups. Mixed-effects linear regression was used to compare RRF between the groups. Patients in the RAAS group had a greater proportion of higher urine volume at study enrollment compared to the control group, but there was no difference in baseline characteristics, heart function, and dialysis-related indices. After adjusting for confounding factors, the RAAS group did not provide a significant benefit to RRF in a mixed-effects linear regression (p = 0.51). Male gender, high Charlson comorbidity index, diuretic use, and high weekly ultrafiltration volume were associated with faster decline in RRF. The RAAS group failed to provide a protective effect for the development of anuria 1 year after initiating dialysis based on the multivariate logistic regression (OR 0.73 95% CI 0.25–2.13, p = 0.57). In Korean patients with incident HD, RAAS blockade did not provide a protective effect for RRF after 1 year. Further research is needed to clarify the optimal treatment for preserving RRF in HD patients.
Prognostic classification of endometrial cancer using a molecular approach based on a twelve-gene NGS panel
Authors: López-Reig Raquel , Fernández-Serra Antonio , Romero Ignacio , Zorrero Cristina , Illueca Carmen , García-Casado Zaida , Poveda Andrés , López-Guerrero José Antonio 
Published: December 2019

AbstractEndometrial Cancer (EC) is one of the most common malignancies in women in developed countries. Molecular characterization of different biotypes may improve clinical management of EC. The Cancer Genome Atlas (TCGA) project has revealed four prognostic EC subgroups: POLE, MSI; Copy Number Low (CNL) and Copy Number High (CNH). The goal of this study was to develop a method to classify tumors in any of the four EC prognostic groups using affordable molecular techniques. Ninety-six Formalin-Fixed Paraffin-embedded (FFPE) samples were sequenced following a NGS TruSeq Custom Amplicon low input (Illumina) protocol interrogating a multi-gene panel. MSI analysis was performed by fragment analysis using eight specific microsatellite markers. A Random Forest classification algorithm (RFA), considering NGS results, was developed to stratify EC patients into different prognostic groups. Our approach correctly classifies the EC patients into the four TCGA prognostic biotypes. The RFA assigned the samples to the CNH and CNL groups with an accuracy of 0.9753 (p < 0.001). The prognostic value of these groups was prospectively reproduced on our series both for Disease-Free Survival (p = 0.004) and Overall Survival (p = 0.030).Hence, with the molecular approach herein described, a precise and suitable tool that mimics the prognostic EC subtypes has been solved and validated. Procedure that might be introduced into routine diagnostic practices.
Terahertz coherent receiver using a single resonant tunnelling diode
Authors: Nishida Yousuke , Nishigami Naoki , Diebold Sebastian , Kim Jaeyoung , Fujita Masayuki , Nagatsuma Tadao 
Published: December 2019

AbstractTowards exploring advanced applications of terahertz (THz) electromagnetic waves, great efforts are being applied to develop a compact and sensitive THz receiver. Here, we propose a simple coherent detection system using a single resonant tunnelling diode (RTD) oscillator through self-oscillating mixing with an RTD oscillator injection-locked by a carrier wave. Coherent detection is successfully demonstrated with an enhancement in the sensitivity of >20 dB compared to that of direct detection. As a proof of concept, we performed THz wireless communications using an RTD coherent receiver and transmitter. We achieved 30-Gbit/s real-time error-free transmission, which is the highest among all electronic systems without error correction to date. Our results show that the proposed system can reduce the size and power consumption of various THz systems including sensing, imaging and ranging, which would enable progress to be made in a wide range of fields in such as material science, medicine, chemistry, biology, physics, astronomy, security, robotics and motor vehicle.
Muropeptides Stimulate Growth Resumption from Stationary Phase in Escherichia coli
Authors: Jõers Arvi , Vind Kristiina , Hernández Sara B. , Maruste Regina , Pereira Marta , Brauer Age , Remm Maido , Cava Felipe , Tenson Tanel 
Published: December 2019

AbstractWhen nutrients run out, bacteria enter a dormant metabolic state. This low or undetectable metabolic activity helps bacteria to preserve their scant reserves for the future needs, yet it also diminishes their ability to scan the environment for new growth-promoting substrates. However, neighboring microbial growth is a reliable indicator of a favorable environment and can thus serve as a cue for exiting dormancy. Here we report that for Escherichia coli and Pseudomonas aeruginosa this cue is provided by the basic peptidoglycan unit (i.e. muropeptide). We show that several forms of muropeptides from a variety of bacterial species can stimulate growth resumption of dormant cells and the sugar – peptide bond is crucial for this activity. These results, together with previous research that identifies muropeptides as a germination signal for bacterial spores, and their detection by mammalian immune cells, show that muropeptides are a universal cue for bacterial growth.
Mediating role of attenuated physiological arousal on the association between psychopathic traits and fairness norm violation
Authors: Osumi Takahiro 
Published: December 2019

AbstractThe low-fear model of primary psychopathy has been supported by empirical findings such as attenuated physiological arousal in anticipation of threatening stimuli. The somatic marker hypothesis proposes that salient changes in the bodily state are processed as signals of whether a situation is good or bad and guide an individual to avoid potential adverse consequences. The present study aimed to elucidate the role that attenuated physiological arousal plays in the relationship between primary psychopathy and fairness norm violations both under the threat of punishment and under no potential for punishment. Primary psychopathy was associated with an attenuated skin conductance response prior to the choice of unfair monetary offers to another person, regardless of the potential for punishment. Attenuated skin conductance mediated the association between primary psychopathy and the choice of an unfair offer, especially in the no-punishment condition. However, in the punishment condition, primary psychopathy significantly predicted the choice of unfair offers even after controlling for the magnitude of skin conductance. The bodily response may have only a marginal effect on interpersonal decision-making under a threat of punishment. The present results suggest that the low-fear account of social norm violations as a function of primary psychopathy should be re-discussed.
A mouse model of subacute liver failure with ascites induced by step-wise increased doses of (-)-epigallocatechin-3-gallate
Authors: Wang Xiaoxiao , Yang Lumin , Wang Jiajia , Zhang Yafei , Dong Ruixia , Wu Ximing , Yang Chung S. , Zhang Zhenhua , Zhang Jinsong 
Published: December 2019

AbstractAcute liver failure is divided into hyperacute, acute and subacute liver failure. Ascites is a common complication of subacute liver failure. Although animal models of acute liver failure have been established, the study of the pathogenesis of subacute liver failure with ascites complication is hampered by the lack of experimental animal model. The present study aimed at providing a mouse model of subacute liver failure with ascites complication. Kunming mice were intraperitoneally injected with (-)-epigallocatechin-3-gallate (EGCG), a redox-active polyphenol from green tea, for 32 consecutive days with step-wise increased dosage. The EGCG treatment resulted in liver failure as evidenced by extensive hepatocyte necrosis observed histologically along with significant elevation of serum alanine aminotransferase, aspartate aminotransferase, total bilirubin and direct bilirubin levels as well as significant reduction of serum albumin. Liver fibrosis was not observed by Masson staining and fibrosis-associated proteins were not increased. The mortality was less than 12% and the survival mice developed noticeable ascites. Hepatic thioredoxin and glutathione systems were activated by the EGCG. These adaptive responses might render most mice tolerable to the EGCG treatment. The EGCG treatment significantly up-regulated renal urea transporter A1 and promoted its trafficking to apical membrane. These alterations, known to increase water reabsorption, may be responsible, at least in part, for the formation of the ascites. Overall, the mice treated with gradually elevated doses of EGCG exhibits some of the features observed in patients with subacute liver failure, especially ascites. This mouse model is a useful tool for investigating the pathogenesis of subacute liver failure with ascites complication.
The prognostic value of B7-H6 in esophageal squamous cell carcinoma
Authors: Zhou Huan , Dong Jun , Guo Liyi , Wang Xicheng , Wang Kailin , Cai Xiuyu , Yang Shu 
Published: December 2019

AbstractB7-H6, a member of the B7 family molecules, participates in the clearance of tumor cells by binding to NKp30 on NK cells. B7-H6 expression level in esophageal squamous cell carcinoma (ESCC) and the clinical value remain unknown. The goal of this study was to determine the expression of B7-H6 in ESCC and further explore its clinical significance. We retrospectively collected the clinical data of 145 patients diagnosed with ESCC between January 2007 and December 2008. The expression of B7-H6 of the pathological tissue samples was detected by immunohistochemistry. The chi-square (χ2) test was used to analyse the relationships of B7-H6 and clinicopathological characteristics. Survival and hazard functions were estimated using the Kaplan-Meier method, and survival between groups was compared using the two-sided log-rank test. The Cox proportional hazards regression model was used to adjust for the risk factors related to overall survival (OS). 133/145 (91.72%) of the ESCC tissue samples exhibited B7-H6 expression. The expression level of B7-H6 was correlated with T stage (P = 0.036) and lymphatic metastasis status (P = 0.044). High B7-H6 expression (P = 0.003) was associated with a significantly worse OS than low B7-H6 expression. Multivariate Cox proportional hazards regression analysis demonstrated that tumour size (P = 0.021), B7-H6 expression (P = 0.025) and lymphatic metastasis status (P = 0.049) were independent prognostic factors of OS for ESCC. Collectively, our findings suggest that B7-H6 is widely expressed in ESCC samples. And B7-H6 may represent a predictor of poor prognosis for ESCC.
The Characteristics of Absorbency Under Load (AUL) for Superabsorbent and Soil Mixtures
Authors: Misiewicz Jakub , Lejcuś Krzysztof , Dąbrowska Jolanta , Marczak Daria 
Published: December 2019

AbstractVarious applications of superabsorbent polymers (SAP) include the use of these materials in agriculture and environmental engineering to increase soil water retention. Under such conditions, there is water absorption of the SAP in soil under load. This paper presents the results of absorbency under load (AUL) of a cross-linked copolymer of acrylamide and potassium acrylate mixed at ratios of 0.3%, 0.5% and 1.0% with coarse sand and sandy loam. The mixtures were subjected to loads equivalent to 10, 20 and 40 cm of soil. The highest differences in AUL values for both soils, compared to the control sample, were obtained after 24 hours and at a maximum load of 5.9 kPa, which corresponds to a load of a 40 cm thick topsoil layer. The AUL was 71.4 g∙g−1 for coarse sand and 52.7 g∙g−1 for sandy loam with a 1.0% SAP addition, which corresponded to 24.0% and 18.0%, respectively, of the absorption in the control sample. All the conducted tests revealed a significantly low rate of water absorbency, which is especially important for capturing the water that infiltrates into the soil profile. The results demonstrate that water absorption by SAPs decreased with the increase in SAP addition.