bluuebunny/crossref_metadata_2025_split huggingface dataset:
Identification of non-Fermi liquid fermionic self-energy from quantum Monte Carlo data
Authors: Xu Xiao Yan , Klein Avraham , Sun Kai , Chubukov Andrey V. , Meng Zi Yang 
Published: September 2020

AbstractQuantum Monte Carlo (QMC) simulations of correlated electron systems provide unbiased information about system behavior at a quantum critical point (QCP) and can verify or disprove the existing theories of non-Fermi liquid (NFL) behavior at a QCP. However, simulations are carried out at a finite temperature, where quantum critical features are masked by finite-temperature effects. Here, we present a theoretical framework within which it is possible to separate thermal and quantum effects and extract the information about NFL physics at T = 0. We demonstrate our method for a specific example of 2D fermions near an Ising ferromagnetic QCP. We show that one can extract from QMC data the zero-temperature form of fermionic self-energy Σ(ω) even though the leading contribution to the self-energy comes from thermal effects. We find that the frequency dependence of Σ(ω) agrees well with the analytic form obtained within the Eliashberg theory of dynamical quantum criticality, and obeys ω2/3 scaling at low frequencies. Our results open up an avenue for QMC studies of quantum critical metals.
Identification of the Wallenda JNKKK as an Alk suppressor reveals increased competitiveness of Alk-expressing cells
Authors: Wolfstetter Georg , Pfeifer Kathrin , Backman Mattias , Masudi Tafheem A. , Mendoza-García Patricia , Chen Sa , Sonnenberg Hannah , Sukumar Sanjay K. , Uçkun Ezgi , Varshney Gaurav K. , Uv Anne , Palmer Ruth H. 
Published: September 2020

AbstractAnaplastic lymphoma kinase (Alk) is a receptor tyrosine kinase of the insulin receptor super-family that functions as oncogenic driver in a range of human cancers such as neuroblastoma. In order to investigate mechanisms underlying Alk oncogenic signaling, we conducted a genetic suppressor screen in Drosophila melanogaster. Our screen identified multiple loci important for Alk signaling, including members of Ras/Raf/ERK-, Pi3K-, and STAT-pathways as well as tailless (tll) and foxo whose orthologues NR2E1/TLX and FOXO3 are transcription factors implicated in human neuroblastoma. Many of the identified suppressors were also able to modulate signaling output from activated oncogenic variants of human ALK, suggesting that our screen identified targets likely relevant in a wide range of contexts. Interestingly, two misexpression alleles of wallenda (wnd, encoding a leucine zipper bearing kinase similar to human DLK and LZK) were among the strongest suppressors. We show that Alk expression leads to a growth advantage and induces cell death in surrounding cells. Our results suggest that Alk activity conveys a competitive advantage to cells, which can be reversed by over-expression of the JNK kinase kinase Wnd.
Self-propelled droplet transport on shaped-liquid surfaces
Authors: Launay Gaby , Sadullah Muhammad Subkhi , McHale Glen , Ledesma-Aguilar Rodrigo , Kusumaatmaja Halim , Wells Gary G. 
Published: September 2020

AbstractThe transport of small amounts of liquids on solid surfaces is fundamental for microfluidics applications. Technologies allowing control of droplets of liquid on flat surfaces generally involve the generation of a wettability contrast. This approach is however limited by the resistance to motion caused by the direct contact between the droplet and the solid. We show here that this resistance can be drastically reduced by preventing direct contact with the help of dual-length scale micro-structures and the concept of “liquid-surfaces”. These new surfaces allow the gentle transport of droplets along defined paths and with fine control of their speed. Moreover, their high adhesion permits the capture of impacting droplets, opening new possibilities in applications such as fog harvesting and heat transfer.
Differentiated ovine tracheal epithelial cells support the colonisation of pathogenic and non-pathogenic strains of Mannheimia haemolytica
Authors: O’Boyle Nicky , Berry Catherine C. , Davies Robert L. 
Published: September 2020

AbstractMannheimia haemolytica is the primary bacterial species associated with respiratory disease of ruminants. A lack of cost-effective, reproducible models for the study of M. haemolytica pathogenesis has hampered efforts to better understand the molecular interactions governing disease progression. We employed a highly optimised ovine tracheal epithelial cell model to assess the colonisation of various pathogenic and non-pathogenic M. haemolytica isolates of bovine and ovine origin. Comparison of single representative pathogenic and non-pathogenic ovine isolates over ten time-points by enumeration of tissue-associated bacteria, histology, immunofluorescence microscopy and scanning electron microscopy revealed temporal differences in adhesion, proliferation, bacterial cell physiology and host cell responses. Comparison of eight isolates of bovine and ovine origin at three key time-points (2 h, 48 h and 72 h), revealed that colonisation was not strictly pathogen or serotype specific, with isolates of serotype A1, A2, A6 and A12 being capable of colonising the cell layer regardless of host species or disease status of the host. A trend towards increased proliferative capacity by pathogenic ovine isolates was observed. These results indicate that the host-specific nature of M. haemolytica infection may result at least partially from the colonisation-related processes of adhesion, invasion and proliferation at the epithelial interface.
Single-step genome-wide association study for social genetic effects and direct genetic effects on growth in Landrace pigs
Authors: Hong Joon-Ki , Lee Jae-Bong , Ramayo-Caldas Yuliaxis , Kim Si-Dong , Cho Eun-Seok , Kim Young-Sin , Cho Kyu-Ho , Lee Deuk-Hwan , Park Hee-Bok 
Published: September 2020

AbstractIn livestock social interactions, social genetic effects (SGE) represent associations between phenotype of one individual and genotype of another. Such associations occur when the trait of interest is affected by transmissible phenotypes of social partners. The aim of this study was to estimate SGE and direct genetic effects (DGE, genetic effects of an individual on its own phenotype) on average daily gain (ADG) in Landrace pigs, and to conduct single-step genome-wide association study using SGE and DGE as dependent variables to identify quantitative trait loci (QTLs) and their positional candidate genes. A total of 1,041 Landrace pigs were genotyped using the Porcine SNP 60K BeadChip. Estimates of the two effects were obtained using an extended animal model. The SGE contributed 16% of the total heritable variation of ADG. The total heritability estimated by the extended animal model including both SGE and DGE was 0.52. The single-step genome-wide association study identified a total of 23 QTL windows for the SGE on ADG distributed across three chromosomes (i.e., SSC1, SSC2, and SSC6). Positional candidate genes within these QTL regions included PRDM13, MAP3K7, CNR1, HTR1E, IL4, IL5, IL13, KIF3A, EFHD2, SLC38A7, mTOR, CNOT1, PLCB2, GABRR1, and GABRR2, which have biological roles in neuropsychiatric processes. The results of biological pathway and gene network analyses also support the association of the neuropsychiatric processes with SGE on ADG in pigs. Additionally, a total of 11 QTL windows for DGE on ADG in SSC2, 3, 6, 9, 10, 12, 14, 16, and 17 were detected with positional candidate genes such as ARL15. We found a putative pleotropic QTL for both SGE and DGE on ADG on SSC6. Our results in this study provide important insights that can help facilitate a better understanding of the molecular basis of SGE for socially affected traits.
A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome
Authors: Vijaya Kumar Sushmitha , Abraham Paul E. , Hurst Gregory B. , Chourey Karuna , Bible Amber N. , Hettich Robert L. , Doktycz Mitchel J. , Morrell-Falvey Jennifer L. 
Published: September 2020

AbstractMembrane organization plays an important role in signaling, transport, and defense. In eukaryotes, the stability, organization, and function of membrane proteins are influenced by certain lipids and sterols, such as cholesterol. Bacteria lack cholesterol, but carotenoids and hopanoids are predicted to play a similar role in modulating membrane properties. We have previously shown that the loss of carotenoids in the plant-associated bacteria Pantoea sp. YR343 results in changes to membrane biophysical properties and leads to physiological changes, including increased sensitivity to reactive oxygen species, reduced indole-3-acetic acid secretion, reduced biofilm and pellicle formation, and reduced plant colonization. Here, using whole cell and membrane proteomics, we show that the deletion of carotenoid production in Pantoea sp. YR343 results in altered membrane protein distribution and abundance. Moreover, we observe significant differences in the protein composition of detergent-resistant membrane fractions from wildtype and mutant cells, consistent with the prediction that carotenoids play a role in organizing membrane microdomains. These data provide new insights into the function of carotenoids in bacterial membrane organization and identify cellular functions that are affected by the loss of carotenoids.
The relationship between alertness and spatial attention under simulated shiftwork
Authors: Chandrakumar D. , Dorrian J. , Banks S. , Keage H. A. D. , Coussens S. , Gupta C. , Centofanti S. A. , Stepien J. M. , Loetscher T. 
Published: September 2020

AbstractHigher and lower levels of alertness typically lead to a leftward and rightward bias in attention, respectively. This relationship between alertness and spatial attention potentially has major implications for health and safety. The current study examined alertness and spatial attention under simulated shiftworking conditions. Nineteen healthy right-handed participants (M = 24.6 ± 5.3 years, 11 males) completed a seven-day laboratory based simulated shiftwork study. Measures of alertness (Stanford Sleepiness Scale and Psychomotor Vigilance Task) and spatial attention (Landmark Task and Detection Task) were assessed across the protocol. Detection Task performance revealed slower reaction times and higher omissions of peripheral (compared to central) stimuli, with lowered alertness; suggesting narrowed visuospatial attention and a slight left-sided neglect. There were no associations between alertness and spatial bias on the Landmark Task. Our findings provide tentative evidence for a slight neglect of the left side and a narrowing of attention with lowered alertness. The possibility that one’s ability to sufficiently react to information in the periphery and the left-side may be compromised under conditions of lowered alertness highlights the need for future research to better understand the relationship between spatial attention and alertness under shiftworking conditions.
Grouping strategies in number estimation extend the subitizing range
Authors: Maldonado Moscoso Paula A. , Castaldi Elisa , Burr David C. , Arrighi Roberto , Anobile Giovanni 
Published: September 2020

AbstractWhen asked to estimate the number of items in a visual array, educated adults and children are more precise and rapid if the items are clustered into small subgroups rather than randomly distributed. This phenomenon, termed “groupitizing”, is thought to rely on the recruitment of the subitizing system (dedicated to the perception of very small numbers), with the aid of simple arithmetical calculations. The aim of current study is to verify whether the advantage for clustered stimuli does rely on subitizing, by manipulating attention, known to strongly affect attention. Participants estimated the numerosity of grouped or ungrouped arrays in condition of full attention or while attention was diverted with a dual-task. Depriving visual attention strongly decreased estimation precision of grouped but not of ungrouped arrays, as well as increasing the tendency for numerosity estimation to regress towards the mean. Additional explorative analyses suggested that calculation skills correlated with the estimation precision of grouped, but not of ungrouped, arrays. The results suggest that groupitizing is an attention-based process that leverages on the subitizing system. They also suggest that measuring numerosity estimation thresholds with grouped stimuli may be a sensitive correlate of math abilities.
Hydrochemical composition and potentially toxic elements in the Kyrgyzstan portion of the transboundary Chu-Talas river basin, Central Asia
Authors: Ma Long , Li Yaoming , Abuduwaili Jilili , Abdyzhapar uulu Salamat , Liu Wen 
Published: September 2020

AbstractWater chemistry and the assessment of health risks of potentially toxic elements have important research significance for water resource utilization and human health. However, not enough attention has been paid to the study of surface water environments in many parts of Central Asia. Sixty water samples were collected from the transboundary river basin of Chu-Talas during periods of high and low river flow, and the hydrochemical composition, including major ions and potentially toxic elements (Zn, Pb, Cu, Cr, and As), was used to determine the status of irrigation suitability and risks to human health. The results suggest that major ions in river water throughout the entire basin are mainly affected by water–rock interactions, resulting in the dissolution and weathering of carbonate and silicate rocks. The concentrations of major ions change to some extent with different hydrological periods; however, the hydrochemical type of calcium carbonate remains unchanged. Based on the water-quality assessment, river water in the basin is classified as excellent/good for irrigation. The relationship between potentially toxic elements (Zn, Pb, Cu, Cr, and As) and major ions is basically the same between periods of high and low river flow. There are significant differences between the sources of potentially toxic elements (Zn, Pb, Cu, and As) and major ions; however, Cr may share the same rock source as major ions. The risk assessment revealed low non-carcinogenic and carcinogenic risks for human health; however, the maximum carcinogenic risk for As exceeded the allowable value, which requires further consideration. These results provide a scientific basis for the management of agricultural irrigation uses and also infill existing gaps regarding the hydrochemical composition in the Chu-Talas river basin, Central Asia.
Predicting county-scale maize yields with publicly available data
Authors: Jiang Zehui , Liu Chao , Ganapathysubramanian Baskar , Hayes Dermot J. , Sarkar Soumik 
Published: September 2020

AbstractMaize (corn) is the dominant grain grown in the world. Total maize production in 2018 equaled 1.12 billion tons. Maize is used primarily as an animal feed in the production of eggs, dairy, pork and chicken. The US produces 32% of the world’s maize followed by China at 22% and Brazil at 9% (https://apps.fas.usda.gov/psdonline/app/index.html#/app/home). Accurate national-scale corn yield prediction critically impacts mercantile markets through providing essential information about expected production prior to harvest. Publicly available high-quality corn yield prediction can help address emergent information asymmetry problems and in doing so improve price efficiency in futures markets. We build a deep learning model to predict corn yields, specifically focusing on county-level prediction across 10 states of the Corn-Belt in the United States, and pre-harvest prediction with monthly updates from August. The results show promising predictive power relative to existing survey-based methods and set the foundation for a publicly available county yield prediction effort that complements existing public forecasts.
Effects of polydopamine coatings on nucleation modes of surface mineralization from simulated body fluid
Authors: Murari Giovannimaria , Bock Nathalie , Zhou Huan , Yang Lei , Liew Teresa , Fox Kate , Tran Phong A. 
Published: September 2020

AbstractPolydopamine (PDA) has been recently used as a versatile priming layer for further functionalization of a biomaterial surface, particularly in biomimetic mineralization of biomaterials. Yet most of the existing literature is on inorganic substrates and the underlying effects of the PDA layer coatings on the nucleation and mineralization process and the mineral-substrate interface have not been clearly identified. Here we aimed to investigate the effects of the PDA layer on the nucleation and growth and interfacial morphology of calcium phosphate mineral layer (CaP) from 10× simulated body fluid (10× SBF) on polymeric substrates. It is found that the nucleation of CaP on PDA-coated surface favors a mixed “islanding” and planar growth mode (Stranski–Krastanov) while the “islanding” mode (Volmer–Weber) was observed on the surface without PDA. This different early nucleation stage of mineralization was found to correlate with a more “bonded” interface between the mineral layer and the PDA-coated substrates, a slight increase in the interfacial strength and a different delamination mode. This study therefore provided new insights on how polydopamine priming layer influenced the mineralization process and the interface between the mineral layer and the substrate.
The interplay of emotion expressions and strategy in promoting cooperation in the iterated prisoner’s dilemma
Authors: de Melo Celso M. , Terada Kazunori 
Published: September 2020

AbstractThe iterated prisoner’s dilemma has been used to study human cooperation for decades. The recent discovery of extortion and generous strategies renewed interest on the role of strategy in shaping behavior in this dilemma. But what if players could perceive each other’s emotional expressions? Despite increasing evidence that emotion signals influence decision making, the effects of emotion in this dilemma have been mostly neglected. Here we show that emotion expressions moderate the effect of generous strategies, increasing or reducing cooperation according to the intention communicated by the signal; in contrast, expressions by extortionists had no effect on participants’ behavior, revealing a limitation of highly competitive strategies. We provide evidence that these effects are mediated mostly by inferences about other’s intentions made from strategy and emotion. These findings provide insight into the value, as well as the limits, of behavioral strategies and emotion signals for cooperation.
Central serous chorioretinopathy and heart rate variability analysis with a smartphone application
Authors: Takeshima Keigo , Tanaka Koji , Mori Ryusaburo , Wakatsuki Yu , Onoe Hajime , Sakakibara Takuya , Kitagawa Yorihisa , Nakashizuka Hiroyuki , Tsuchiya Norihiro 
Published: September 2020

AbstractThe purpose of this study was to quantitatively analyze heart rate variability (HRV) in patients with central serous chorioretinopathy (CSC) by using a smartphone-based application (ANBAI: DUMSCO Inc.) for measurement, and to clarify its relationships with CSC. The subjects were 64 CSC patients (mean age 48.7 ± 7.6 years, 57 males and 7 females). After providing consent, the patients downloaded ANBAI apps to their smartphones. HRV was measured by photoelectric volume pulse wave measurement with a smartphone camera each morning for a minimum of 1 week. The primary outcome was to analyze HRV by calculating log LF/HF (Low Frequency/High Frequency components), an index of autonomic tone, which was then compared with a control group of 35,226 individuals from the application. Secondary outcome measures included disease duration, body mass index, exercise habits, smoking history, steroid use, occupation, lifestyle regularity, psychological fatigue, physical fatigue, and average sleep time. The log LF/HF was significantly higher in the patient group than in the control group (P < 0.001). Log LF/HF was significantly lower in patients with exercise habits as a factor contributing to log LF/HF in the patient group (P = 0.019). Analysis of HRV in CSC patients showed an impairment of the autonomic nervous system. Exercise habits may also be associated with CSC.
In vivo assessment of cerebrospinal fluid efflux to nasal mucosa in humans
Authors: Melin Erik , Eide Per Kristian , Ringstad Geir 
Published: September 2020

AbstractExtra-vascular molecular clearance routes from the brain and cerebrospinal fluid (CSF) remain insufficiently characterized in humans. Animal studies consistently suggest that the cribriform plate and nasal lymphatic vessels are crucial for molecular clearance from CSF. In this study, we aimed to examine human in vivo transport of a CSF tracer from CSF to nasal mucosa. We hypothesised a CSF tracer would enrich in nasal mucosa provided that nasal lymphatic drainage has a significant role in CSF molecular clearance. Consecutive magnetic resonance imaging during 48 h after intrathecal administration of a tracer (gadobutrol) was performed in 24 patients. Despite a strong enrichment of CSF tracer in CSF spaces nearby the cribriform plate, there was no significant enrichment of CSF tracer in nasal mucosa, as measured in superior, medial and inferior turbinates, or in the nasal septum. Therefore, this in vivo study questions the importance of CSF drainage to the human nasal mucosa and emphasizes the need of further human studies.
Diagnostic value of four neuroendocrine markers in small cell neuroendocrine carcinomas of the cervix: a meta-analysis
Authors: Huang Rui , Yu Li , Zheng Chunying , Liang Qingchun , Suye Suye , Yang Xue , Yin Huan , Ren Zhen , Shi Liye , Zhang Zhibang , Chen Hongliang , Fu Chun 
Published: September 2020

AbstractSmall cell neuroendocrine carcinoma of the cervix (SCNECC) is a highly invasive cervical cancer. The immunohistochemical criteria is an important aspect for assistant diagnosis of SCNECC. However, which markers can be appropriate selection for diagnosing SCNECC were not determined. The aim was to systematically evaluate expression levels of four neuroendocrine markers (containing synaptophysin (Syn), neural cell adhesion molecules (CD56), neuron-specific enolase (NSE) and chromograninA (CgA)) and to find out the appropriate selection for diagnosing SCNECC. Four English and three Chinese libraries were retrieved between 1984 and 2020. 23 studies about NSE, 36 studies about Syn, 23 studies about CD56 and 36 studies about CgA (all studies containing 581 patients) were eligible for meta-analyses. The pooled positive expression percentages (95% CI; I2) were as follows: 84.84% (79.41–90.27%; 76.7%) for Syn, 84.53% (79.43–89.96%; 37.5%) for CD56, 77.94% (69.13–86.76%; 83.5%) for NSE, and 72.90% (67.40–78.86%; 59.7%) for CgA. The positive proportions (95% CI; I2) ranked top three of simultaneous expressions of two markers were 87.75% (82.03–93.87%, 33.3%) for Syn and CD56, 70.92% (50.50–87.68%, 82.7%) for Syn and NSE, 65.65% (53.33–76.98%, 73.5%) for Syn and CgA. This confirms that Syn and CD56 are reliable indicators for diagnosing SCNECC.