bluuebunny/crossref_metadata_2025_split huggingface dataset:
Low ETV1 mRNA expression is associated with recurrence in gastrointestinal stromal tumors
Authors: Sakamaki Keiichi , Funasaka Kohei , Miyahara Ryoji , Furukawa Kazuhiro , Yamamura Takeshi , Ohno Eizaburo , Nakamura Masanao , Kawashima Hiroki , Hirooka Yoshiki , Fujishiro Mitsuhiro , Goto Hidemi 
Published: September 2020

AbstractAlthough the majority of gastrointestinal stromal tumors (GISTs) possess KIT mutations that induce constitutive signal transduction, the clinical outcomes are variable. The ETS translocation variant 1 (ETV1) gene encodes a transcription factor that is reported to cooperate with KIT in GISTs. However, the clinical role of ETV1 is largely unknown. The aim of this study was to examine ETV1 expression and its associations with clinical features in GISTs. We conducted a cohort study involving 64 patients with GISTs who underwent surgical resection between October 2008 and February 2015. ETV1 mRNA expression was compared with that in non-GISTs and was analyzed among risk classifications or clinical outcomes. The GIST samples exhibited significantly higher ETV1 mRNA expression than the non-GIST samples (P < 0.0001). Sixty-four GISTs were stratified into high or low ETV1 mRNA expression groups based on the median relative abundance of ETV1 mRNA. The multivariate analysis showed that low ETV1 expression, as well as tumor size and mitotic index, was an independent factor of recurrence (hazard ratio: 8.1). Patients with high ETV1 expression achieved significantly longer recurrence-free survival (RFS) times than those with low ETV1 expression (P = 0.025). Our study revealed that low ETV1 expression is an independent factor of recurrence after surgery in patients with GISTs, and thus, low ETV1 expression might be a marker of more aggressive malignant GISTs.
Environmental filtering and spillover explain multi-species edge responses across agricultural boundaries in a biosphere reserve
Authors: van Schalkwyk J. , Pryke J. S. , Samways M. J. , Gaigher R. 
Published: September 2020

AbstractTo ensure integrity of protected areas we need to understand how species respond to anthropogenic borders. We investigate, from a metacommunity perspective, the direct and indirect mechanisms by which transformed areas affect distribution patterns of ground-living arthropod assemblages inhabiting an extensive protected area adjacent to fruit orchards in an important biosphere reserve. Arthropods and environmental variables were sampled along transects perpendicular to natural-orchard edges. Influence of distance from orchard boundary, degree of impermeability of the boundary, orchard habitat quality (local scale land-use intensity), and edge-induced changes in local environmental variables on arthropod species richness and composition in non-crop habitats were assessed. Arthropod groups were assessed in terms of habitat fidelity: species associated with natural habitat (stenotopic species), those within crop habitat (cultural species), and those showing no preference for either habitat (ubiquitous species). Spillover resulted in higher cultural species richness near edges, but not higher overall species richness. Environmental filtering was important for stenotopic species composition, which was influenced by edge-induced changes in environmental variables. Ubiquitous species composition was determined by orchard impermeability. Increased orchard habitat quality was associated with higher cultural and ubiquitous species richness. The effects of orchards on assemblages in natural habitats can be variable, but predictable when using species habitat specificity in conjunction with a metacommunity framework. High intensity orchards may act as sink habitats, especially for species that readily disperse between crop and natural habitats. Here we recommend that local buffer strips are > 85 m wide, which will reduce the influence of cultural species spillover on sensitive natural ecosystems.
A water droplet-cleaning of a dusty hydrophobic surface: influence of dust layer thickness on droplet dynamics
Authors: Hassan Ghassan , Yilbas Bekir S. , Bahatab Saeed , Al-Sharafi Abdullah , Al-Qahtani Hussain 
Published: September 2020

AbstractWater droplet cleaning of a dusty hydrophobic surface is examined. Environmental dust are used in the experiments and cloaking velocity of a dust layer by a droplet fluid is measured and hemi-wicking conditions for the dust layer are analyzed adopting the pores media wick structure approach. A droplet motion on dusty and inclined hydrophobic surface is analyzed using a high speed digital imaging system. Influences of dust layer thickness, droplet volume, and surface inclination angle on the mechanisms of dust removal by a rolling droplet are evaluated. The findings revealed that dust cloaking velocity decreases exponentially with time. The droplet fluid can cloak the dust layer during its transition on the dusty surface. The transition period of droplet wetted length on the dusty surface remains longer than the cloaking time of the dust layer by the droplet fluid. Translational velocity of rolling droplet is affected by the dust layer thickness, which becomes apparent for small volume droplets. Small volume droplet (20 µL) terminates on the thick dust layer (150 µm) at low surface inclination angle (1°). The quantity of dust picked up by the rolling droplet increases as the surface inclination angle increases. The amount of dust residues remaining on the rolling droplet path is relatively larger for the thick dust layer (150 µm) as compared to its counterpart of thin dust layer (50 µm).
Effects of age and speed on the ankle–foot system’s power during walking
Authors: da Silva Lucas Santana , Fukuchi Reginaldo Kisho , Watanabe Renato Naville , Fukuchi Claudiane Arakaki , Duarte Marcos 
Published: September 2020

AbstractStructural and functional changes in the foot have been associated with age-related changes in gait mechanics, but walking speed may be a confounding factor in this relationship. The aim of this study was to investigate the effect of aging and speed on the ankle–foot power output during level walking. The effects of speed and aging on features of the mechanical power and work of the ankle and foot were quantified with a gait analysis of 24 young and 16 older individuals walking at different speeds. We observed gait speed having a significant effect on all the investigated features: peak power and positive and negative work of the ankle, foot, and sum of the ankle and foot (average effect size: 0.64 ± 0.22, from 0.26 to 0.87). We observed age having no effect on these same features (average effect size: 0.23 ± 0.12, from 0.03 to 0.39), with the exception of age’s effect when combined with speed on the negative work of the foot. We performed additional analysis to illustrate how the speed can become a confounding factor to the understanding of the age effect on the gait biomechanics. Based on the influence of gait speed on the mechanical power of the ankle–foot system, it is essential that studies control for the effect of gait speed if there is interest in understanding age-related effects, particularly when studying frail older individuals.
Halogenation as a tool to tune antimicrobial activity of peptoids
Authors: Molchanova Natalia , Nielsen Josefine Eilsø , Sørensen Kristian B. , Prabhala Bala Krishna , Hansen Paul Robert , Lund Reidar , Barron Annelise E. , Jenssen Håvard 
Published: September 2020

AbstractAntimicrobial peptides have attracted considerable interest as potential new class of antibiotics against multi-drug resistant bacteria. However, their therapeutic potential is limited, in part due to susceptibility towards enzymatic degradation and low bioavailability. Peptoids (oligomers of N-substituted glycines) demonstrate proteolytic stability and better bioavailability than corresponding peptides while in many cases retaining antibacterial activity. In this study, we synthesized a library of 36 peptoids containing fluorine, chlorine, bromine and iodine atoms, which vary by length and level of halogen substitution in position 4 of the phenyl rings. As we observed a clear correlation between halogenation of an inactive model peptoid and its increased antimicrobial activity, we designed chlorinated and brominated analogues of a known peptoid and its shorter counterpart. Short brominated analogues displayed up to 32-fold increase of the activity against S. aureus and 16- to 64-fold against E. coli and P. aeruginosa alongside reduced cytotoxicity. The biological effect of halogens seems to be linked to the relative hydrophobicity and self-assembly properties of the compounds. By small angle X-ray scattering (SAXS) we have demontrated how the self-assembled structures are dependent on the size of the halogen, degree of substitution and length of the peptoid, and correlated these features to their activity.
Micro-climatic effects on plant phenolics at the community level in a Mediterranean savanna
Authors: Moreira Xoaquín , Abdala-Roberts Luis , Hidalgo-Galvez M. Dolores , Vázquez-González Carla , Pérez-Ramos Ignacio M. 
Published: September 2020

AbstractResearch has shown that warming and drought change plant phenolics. However, much of this work has centered on the effects of individual abiotic stressors on single plant species rather than the concurrent effects of multiple stressors at the plant community level. To address this gap, we manipulated rainfall and air temperature to test for their individual and interactive effects on the expression of leaf phenolics at the community level for annual plant species occurring in two habitat types (under oak tree canopies or in open grasslands) in a Mediterranean savanna. We found that augmented temperature had a significant positive effect on the community-weighted mean of total phenolics whereas reduced rainfall had no effect. In addition, we found no evidence of interactive effects between climatic stressors and these patterns remained consistent across habitat types. Overall, this study points at increasing efforts to investigate the linkages between climate change and community-level shifts in plant secondary chemistry.
2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) dysregulates hepatic one carbon metabolism during the progression of steatosis to steatohepatitis with fibrosis in mice
Authors: Fling Russell R. , Doskey Claire M. , Fader Kelly A. , Nault Rance , Zacharewski Tim R. 
Published: September 2020

Abstract2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD), a persistent environmental contaminant, induces steatosis that can progress to steatohepatitis with fibrosis, pathologies that parallel stages in the development of non-alcoholic fatty liver disease (NAFLD). Coincidently, one carbon metabolism (OCM) gene expression and metabolites are often altered during NAFLD progression. In this study, the time- and dose-dependent effects of TCDD were examined on hepatic OCM in mice. Despite AhR ChIP-seq enrichment at 2 h, OCM gene expression was not changed within 72 h following a bolus dose of TCDD. Dose-dependent repression of methionine adenosyltransferase 1A (Mat1a), adenosylhomocysteinase (Achy) and betaine-homocysteine S-methyltransferase (Bhmt) mRNA and protein levels following repeated treatments were greater at 28 days compared to 8 days. Accordingly, levels of methionine, betaine, and homocysteic acid were dose-dependently increased, while S-adenosylmethionine, S-adenosylhomocysteine, and cystathionine exhibited non-monotonic dose-dependent responses consistent with regulation by OCM intermediates and repression of glycine N-methyltransferase (Gnmt). However, the dose-dependent effects on SAM-dependent metabolism of polyamines and creatine could not be directly attributed to alterations in SAM levels. Collectively, these results demonstrate persistent AhR activation disrupts hepatic OCM metabolism at the transcript, protein and metabolite levels within context of TCDD-elicited progression of steatosis to steatohepatitis with fibrosis.
Defective development and microcirculation of intestine in Npr2 mutant mice
Authors: Sogawa-Fujiwara Chizuru , Hanagata Atsuki , Fujiwara Yasuhiro , Ishida Yukisato , Tomiyasu Hirotaka , Kunieda Tetsuo , Nakatomi Hirofumi , Hori Masatoshi 
Published: September 2020

AbstractIntractable gastrointestinal (GI) diseases often develop during infancy. Our group previously reported that natriuretic peptide receptor B (NPR-B)-deficient Npr2slw/slw mice exhibit severe intestinal dysfunction, such as stenosis and distention, which resembles the dysfunction observed in Hirschsprung’s disease-allied disorders. However, the root cause of intestinal dysfunction and the detailed of pathophysiological condition in the intestine are not yet clear. Here, we report that the intestine of preweaning Npr2slw/slw mice showed bloodless blood vessels, and nodes were found in the lymphatic vessel. Additionally, the lacteals, smooth muscle, blood vessel, and nerves were barely observed in the villi of preweaning Npr2slw/slw mice. Moreover, intramuscular interstitial cells of Cajal (ICC-IM) were clearly reduced. In contrast, villi and ICC-IM were developed normally in surviving adult Npr2slw/slw mice. However, adult Npr2slw/slw mice exhibited partially hypoplastic blood vessels and an atrophied enteric nervous. Furthermore, adult Npr2slw/slw mice showed markedly reduced white adipose tissue. These findings suggest that the cause of GI dysfunction in preweaning Npr2slw/slw mice is attributed to defective intestinal development with microcirculation disorder. Thus, it is suggested that NPR-B signaling is involved in intestinal development and control of microcirculation and fat metabolism. This report provides new insights into intractable GI diseases, obesity, and NPR-B signaling.
The effectiveness of nonsteroidal anti-inflammatory drugs and acetaminophen in reduce the risk of amyotrophic lateral sclerosis? A meta-analysis
Authors: Chang Min Cheol , Kwak Sang Gyu , Park Jin-Sung , Park Donghwi 
Published: September 2020

AbstractTo test the hypothesis that aspirin, non-aspirin nonsteroidal anti-infammatory drugs (NA-NSAIDs), or acetaminophen can reduce the risk of ALS, we conducted a systematic review and meta-analysis of related previous studies. A comprehensive search was conducted on the PubMed, Embase, Cochrane Library and SCOPUS databases. It included studies published up to 29 February 2020 that fulfilled our inclusion criteria. Aspirin, acetaminophen and NA-NSAIDs use information, between the ALS and control groups, was collected for the meta-analysis. Rates of aspirin, NA-NSAID, and acetaminophen use in ALS group, compared with control group were investigated. In the results, only three studies that relate the risk of ALS to aspirin, NA-NSAIDs and acetaminophen use satisfied the inclusion criteria for the meta-analysis. Regarding aspirin, the studies did not show any statistically significant difference in aspirin use between the ALS and control groups (Odds ratio, 1.04 [95% confidence interval, 0.90–1.21]). NA-NSAIDs and acetaminophen use, however, did show up statistically significant differences in between the ALS and control groups. (Odds ratio, 0.82 [95% confidence interval, 0.73–0.91]) and (Odds ratio, 0.80 [95% confidence interval, 0.69–0.93]). However, our study has some limitations. Firstly, we only included a small number of studies. Secondly, the included studies did not control for past medical history, which may have confounded their results, and in turn, could have caused bias in our study. Thirdly, in this meta-analysis, the ALS patients were not subdivided into sporadic or familial type. Lastly, the studies also did not consider the types of NSAIDs and dosages used of each drug. For more convincing evidence regarding the effectiveness of aspirin, NA-NSAIDs and acetaminophen to reduce the risk of ALS occurrence, more qualified prospective studies are required. In conclusion, the use of NA-NSAIDs and acetaminophen is associated with a decreased risk for the development of ALS. In contrast, aspirin did not have any effect on the reduction of the risk of ALS occurrence.
Seasonal variability of net sea-air CO2 fluxes in a coastal region of the northern Antarctic Peninsula
Authors: Monteiro Thiago , Kerr Rodrigo , Machado Eunice da Costa 
Published: September 2020

AbstractWe show an annual overview of the sea-air CO2 exchanges and primary drivers in the Gerlache Strait, a hotspot for climate change that is ecologically important in the northern Antarctic Peninsula. In autumn and winter, episodic upwelling events increase the remineralized carbon in the sea surface, leading the region to act as a moderate or strong CO2 source to the atmosphere of up to 40 mmol m–2 day–1. During summer and late spring, photosynthesis decreases the CO2 partial pressure in the surface seawater, enhancing ocean CO2 uptake, which reaches values higher than − 40 mmol m–2 day–1. Thus, autumn/winter CO2 outgassing is nearly balanced by an only 4-month period of intense ocean CO2 ingassing during summer/spring. Hence, the estimated annual net sea-air CO2 flux from 2002 to 2017 was 1.24 ± 4.33 mmol m–2 day–1, opposing the common CO2 sink behaviour observed in other coastal regions around Antarctica. The main drivers of changes in the surface CO2 system in this region were total dissolved inorganic carbon and total alkalinity, revealing dominant influences of both physical and biological processes. These findings demonstrate the importance of Antarctica coastal zones as summer carbon sinks and emphasize the need to better understand local/regional seasonal sensitivity to the net CO2 flux effect on the Southern Ocean carbon cycle, especially considering the impacts caused by climate change.
Surface-plasmon-coupled optical force sensors based on metal–insulator–metal metamaterials with movable air gap
Authors: Okatani Taiyu , Sekiguchi Shota , Hane Kazuhiro , Kanamori Yoshiaki 
Published: September 2020

AbstractWe proposed surface-plasmon-coupled optical force sensors based on metal–insulator–metal (MIM) metamaterials with a movable air gap as an insulator layer. The MIM metamaterial was composed of an air gap sandwiched by a metal nanodot array and a metal diaphragm, the resonant wavelength of which was red-shifted when the air gap was narrowed by applying a normal force. We designed and fabricated a prototype of the proposed sensor and confirmed that the MIM metamaterial could be used as a force sensor with larger sensitivity than a force sensor based on Fabry-Pérot interferometer (FPI).
Greenbug (Schizaphis graminum) herbivory significantly impacts protein and phosphorylation abundance in switchgrass (Panicum virgatum)
Authors: Zogli Prince , Alvarez Sophie , Naldrett Michael J. , Palmer Nathan A. , Koch Kyle G. , Pingault Lise , Bradshaw Jeffrey D. , Twigg Paul , Heng-Moss Tiffany M. , Louis Joe , Sarath Gautam 
Published: September 2020

AbstractSwitchgrass (Panicum virgatum L.) is an important crop for biofuel production but it also serves as host for greenbugs (Schizaphis graminum Rondani; GB). Although transcriptomic studies have been done to infer the molecular mechanisms of plant defense against GB, little is known about the effect of GB infestation on the switchgrass protein expression and phosphorylation regulation. The global response of the switchgrass cultivar Summer proteome and phosphoproteome was monitored by label-free proteomics shotgun in GB-infested and uninfested control plants at 10 days post infestation. Peptides matching a total of 3,594 proteins were identified and 429 were differentially expressed proteins in GB-infested plants relative to uninfested control plants. Among these, 291 and 138 were up and downregulated by GB infestation, respectively. Phosphoproteome analysis identified 310 differentially phosphorylated proteins (DP) from 350 phosphopeptides with a total of 399 phosphorylated sites. These phosphopeptides had more serine phosphorylated residues (79%), compared to threonine phosphorylated sites (21%). Overall, KEGG pathway analysis revealed that GB feeding led to the enriched accumulation of proteins important for biosynthesis of plant defense secondary metabolites and repressed the accumulation of proteins involved in photosynthesis. Interestingly, defense modulators such as terpene synthase, papain-like cysteine protease, serine carboxypeptidase, and lipoxygenase2 were upregulated at the proteome level, corroborating previously published transcriptomic data.
An artificial cationic oligosaccharide combined with phosphorothioate linkages strongly improves siRNA stability
Authors: Irie Atsushi , Sato Kazuki , Hara Rintaro Iwata , Wada Takeshi , Shibasaki Futoshi 
Published: September 2020

AbstractSmall interfering RNAs (siRNAs) are potential tools for gene-silencing therapy, but their instability is one of the obstacles in the development of siRNA-based drugs. To improve siRNA stability, we synthesised a double-stranded RNA-binding cationic oligodiaminogalactose 4mer (ODAGal4) and investigated here its characteristics for siRNA stabilisation in vitro. ODAGal4 improved the resistance of various siRNAs against serum degradation. The effect of ODAGal4 on siRNA stabilisation was further amplified by introduction of modified nucleotides into the siRNA. In particular, a combination of ODAGal4 and incorporation of phosphorothioate linkages into the siRNA prominently prevented degradation by serum. The half-lives of fully phosphorothioate-modified RNA duplexes with ODAGal4 were more than 15 times longer than those of unmodified siRNAs without ODAGal4; this improvement in serum stability was superior to that observed for other chemical modifications. Serum degradation assays of RNAs with multiple chemical modifications showed that ODAGal4 preferentially improves the stability of RNAs with phosphorothioate modification among chemical modifications. Furthermore, melting temperature analysis showed that ODAGal4 greatly increases the thermal stability of phosphorothioate RNAs. Importantly, ODAGal4 did not interrupt gene-silencing activity of all the RNAs tested. Collectively, these findings demonstrate that ODAGal4 is a potent stabiliser of siRNAs, particularly nucleotides with phosphorothioate linkages, representing a promising tool in the development of gene-silencing therapies.
Global, regional, and national burden and trend of diabetes in 195 countries and territories: an analysis from 1990 to 2025
Authors: Lin Xiling , Xu Yufeng , Pan Xiaowen , Xu Jingya , Ding Yue , Sun Xue , Song Xiaoxiao , Ren Yuezhong , Shan Peng-Fei 
Published: September 2020

AbstractDiabetes mellitus is a leading cause of mortality and reduced life expectancy. We aim to estimate the burden of diabetes by type, year, regions, and socioeconomic status in 195 countries and territories over the past 28 years, which provide information to achieve the goal of World Health Organization Global Action Plan for the Prevention and Control of Noncommunicable Diseases in 2025. Data were obtained from the Global Burden of Disease Study 2017. Overall, the global burden of diabetes had increased significantly since 1990. Both the trend and magnitude of diabetes related diseases burden varied substantially across regions and countries. In 2017, global incidence, prevalence, death, and disability-adjusted life-years (DALYs) associated with diabetes were 22.9 million, 476.0 million, 1.37 million, and 67.9 million, with a projection to 26.6 million, 570.9 million, 1.59 million, and 79.3 million in 2025, respectively. The trend of global type 2 diabetes burden was similar to that of total diabetes (including type 1 diabetes and type 2 diabetes), while global age-standardized rate of mortality and DALYs for type 1 diabetes declined. Globally, metabolic risks (high BMI) and behavioral factors (inappropriate diet, smoking, and low physical activity) contributed the most attributable death and DALYs of diabetes. These estimations could be useful in policy-making, priority setting, and resource allocation in diabetes prevention and treatment.