bluuebunny/crossref_metadata_2025_split huggingface dataset:
A quantum solution for efficient use of symmetries in the simulation of many-body systems
Authors: Schmitz Albert T. , Johri Sonika 
Published: January 2020

AbstractA many-body Hamiltonian can be block-diagonalized by expressing it in terms of symmetry-adapted basis states. Finding the group orbit representatives of these basis states and their corresponding symmetries is currently a memory/computational bottleneck on classical computers during exact diagonalization. We apply Grover’s search in the form of a minimization procedure to solve this problem. Our quantum solution provides an exponential reduction in memory, and a quadratic speedup in time over classical methods. We discuss explicitly the full circuit implementation of Grover minimization as applied to this problem, finding that the oracle only scales as polylog in the size of the group, which acts as the search space. Further, we design an error mitigation scheme that, with no additional qubits, reduces the impact of bit-flip errors on the computation, with the magnitude of mitigation directly correlated with the error rate, improving the utility of the algorithm in the Noisy Intermediate Scale Quantum era.
Clinical Implications of Suspended Scattering Particles in Motion Observed by Optical Coherence Tomography Angiography
Authors: Ahn Jaemoon , Han Sangheon , Ahn So Min , Kim Seong-Woo , Oh Jaeryung 
Published: January 2020

AbstractThe objective of this study was to investigate the relationship between suspended scattering particles in motion (SSPiM) in optical coherence tomography angiography (OCTA) and treatment response in diabetic macular edema (DME). We retrospectively reviewed the medical records of patients diagnosed with DME who had undergone intravitreal injection. The optical density ratio (ODR) of the intraretinal cyst and the numbers of hyperreflective foci from OCT images and SSPiM from OCTA images were compared, and their association with treatment response was analyzed. Forty-five eyes from 45 patients were included in this study. Twenty-four patients were treated with anti-vascular endothelial growth factor, and 21 patients were treated with a steroid. Binary logistic regression model showed that SSPiM in OCTA images was associated with hyperreflective foci numbers (P = 0.038) and mean ODR of the intraretinal cyst (P = 0.006). Linear regression model showed that SSPiM in the inner nuclear layer was related to treatment response (P = 0.006). SSPiM on OCTA images is related to the poor structural response to treatment in DME.
Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments
Authors: Maus Deborah , Heinz Jacob , Schirmack Janosch , Airo Alessandro , Kounaves Samuel P. , Wagner Dirk , Schulze-Makuch Dirk 
Published: January 2020

AbstractThe current understanding of the Martian surface indicates that briny environments at the near-surface are temporarily possible, e.g. in the case of the presumably deliquescence-driven Recurring Slope Lineae (RSL). However, whether such dynamic environments are habitable for terrestrial organisms remains poorly understood. This hypothesis was tested by developing a Closed Deliquescence System (CDS) consisting of a mixture of desiccated Martian Regolith Analog (MRA) substrate, salts, and microbial cells, which over the course of days became wetted through deliquescence. The methane produced via metabolic activity for three methanogenic archaea: Methanosarcina mazei, M. barkeri and M. soligelidi, was measured after exposing them to three different MRA substrates using either NaCl or NaClO4 as a hygroscopic salt. Our experiments showed that (1) M. soligelidi rapidly produced methane at 4 °C, (2) M. barkeri produced methane at 28 °C though not at 4 °C, (3) M. mazei was not metabolically reactivated through deliquescence, (4) none of the species produced methane in the presence of perchlorate, and (5) all species were metabolically most active in the phyllosilicate-containing MRA. These results emphasize the importance of the substrate, microbial species, salt, and temperature used in the experiments. Furthermore, we show here for the first time that water provided by deliquescence alone is sufficient to rehydrate methanogenic archaea and to reactivate their metabolism under conditions roughly analogous to the near-subsurface Martian environment.
Selection and functional identification of a synthetic partial ABA agonist, S7
Authors: Min Myung Ki , Kim Rigyeong , Moon Seok-Jun , Lee Yongsang , Han Seungsu , Lee Sangho , Kim Beom-Gi 
Published: January 2020

AbstractThe stress hormone abscisic acid (ABA) helps plants to survive under abiotic stresses; however, its use as an agrochemical is limited by its chemical instability and expense. Here, we report the development of an in vivo screening system to isolate chemicals able to induce ABA signalling responses in rice (Oryza sativa) protoplasts. This system consists of an ABA-hypersensitive synthetic promoter containing ABRE and DRE motifs driving a luciferase reporter gene. After efficiently transfecting rice protoplasts with this construct, we screened chemicals library with a similar molecular weight and chemical structure to ABA and identified one chemical, S7, that induced ABA signalling by mediating interactions between the group I and II OsPYL receptors and certain OsPP2CAs in a yeast two-hybrid assay. In an in vitro pulldown assay, S7 was found to mediate a weak interaction between OsPYL5/8 and various OsPP2CAs. S7 treatments did not affect seedling growth or seed germination, but could reduce water loss. Rice seedlings treated with S7 exhibited transcriptome profiles that partially overlapped those treated with ABA. Taken together, we concluded that S7 is a new partial ABA agonist, which has potential use in future dissections of ABA signalling and as an agrochemical.
An Amazon stingless bee foraging activity predicted using recurrent artificial neural networks and attribute selection
Authors: Gomes Pedro A. B. , Suhara Yoshihiko , Nunes-Silva Patrícia , Costa Luciano , Arruda Helder , Venturieri Giorgio , Imperatriz-Fonseca Vera Lucia , Pentland Alex , Souza Paulo de , Pessin Gustavo 
Published: January 2020

AbstractBees play a key role in pollination of crops and in diverse ecosystems. There have been multiple reports in recent years illustrating bee population declines worldwide. The search for more accurate forecast models can aid both in the understanding of the regular behavior and the adverse situations that may occur with the bees. It also may lead to better management and utilization of bees as pollinators. We address an investigation with Recurrent Neural Networks in the task of forecasting bees’ level of activity taking into account previous values of level of activity and environmental data such as temperature, solar irradiance and barometric pressure. We also show how different input time windows, algorithms of attribute selection and correlation analysis can help improve the accuracy of our model.
Association between excessive daytime sleepiness, REM phenotype and severity of obstructive sleep apnea
Authors: Gabryelska Agata , Białasiewicz Piotr 
Published: January 2020

AbstractThe aim of the study was to compare REM-dependent and REM-independent, obstructive sleep apnea syndrome (OSA) patients in relation to their daily sleepiness assessed by Epworth sleepiness scale (ESS). The study included 1863 consecutive patients, who were referred to a sleep centre with a presumed diagnosis of OSA. Following polysomnography, 292 patients fulfilled criteria for either REM-dependent OSA (REM-OSA, n = 102) or REM-independent OSA (nREM-OSA, n = 190). Both study groups were matched regarding sex and age. REM-OSA group had two times lower median apnoea-hypopnea index (AHI) compared to nREM-OSA (p < 0.001), yet day-time sleepiness measured by ESS was similar: median score 9.0 (6.0–11.0) and 8.0 (4.8–11.0), p = 0.109, respectively. Subsequent post-hoc ANCOVA analysis, with covariates (BMI, percent of total sleep time spent in REM stage, percent of total sleep time spent in the supine position), has shown statistically significant difference between study groups regarding AHI (p < 0.001) and no difference regarding ESS score (p = 0.063). Despite two times lower AHI, patients with REM-OSA present with similar day-time sleepiness as those with REM independent OSA. Daily sleepiness may be stronger associated with apneas/hypopneas occurring in REM than nREM sleep.
Comparison between 5-day decitabine and 7-day azacitidine for lower-risk myelodysplastic syndromes with poor prognostic features: a retrospective multicentre cohort study
Authors: Lee Byung-Hyun , Kang Ka-Won , Jeon Min Ji , Yu Eun Sang , Kim Dae Sik , Choi Hojoon , Lee Se Ryeon , Sung Hwa Jung , Kim Byung Soo , Choi Chul Won , Park Yong 
Published: January 2020

AbstractNumerous studies have analysed the clinical efficacies of hypomethylating agents (HMAs) in patients with myelodysplastic syndromes (MDS). However, reports that compare the two HMAs, decitabine and azacitidine, in patients with lower-risk (low and intermediate-1) MDS are limited. We compared 5-day decitabine and 7-day azacitidine regimens in terms of treatment responses, survival outcomes, and adverse events in patients with lower-risk MDS with poor prognostic features. The overall response rates (ORRs) were 67.2% and 44.0% in the patients treated with decitabine and azacitidine, respectively (P = 0.014). While the median progression-free survival (PFS) was significantly better in the patients treated with decitabine than in those treated with azacitidine (P = 0.019), no significant differences in event-free and overall survival rates were observed between the two groups. Multivariate analysis revealed that compared with azacitidine treatment, decitabine treatment is significantly associated with a higher ORR (P = 0.026) and longer PFS (P = 0.037). No significant differences were observed in the incidence of grade 3 or higher haematologic adverse events in response to the two HMAs. In conclusion, in lower-risk MDS, especially with poor prognostic features, ORR and PFS were significantly better with 5-day decitabine treatment than with 7-day azacitidine treatment, with comparable safety.
Endoscopic diagnosis and treatment planning for colorectal polyps using a deep-learning model
Authors: Song Eun Mi , Park Beomhee , Ha Chun-Ae , Hwang Sung Wook , Park Sang Hyoung , Yang Dong-Hoon , Ye Byong Duk , Myung Seung-Jae , Yang Suk-Kyun , Kim Namkug , Byeon Jeong-Sik 
Published: January 2020

AbstractWe aimed to develop a computer-aided diagnostic system (CAD) for predicting colorectal polyp histology using deep-learning technology and to validate its performance. Near-focus narrow-band imaging (NBI) pictures of colorectal polyps were retrieved from the database of our institution. Of these, 12480 image patches of 624 polyps were used as a training set to develop the CAD. The CAD performance was validated with two test datasets of 545 polyps. Polyps were classified into three histological groups: serrated polyp (SP), benign adenoma (BA)/mucosal or superficial submucosal cancer (MSMC), and deep submucosal cancer (DSMC). The overall kappa value measuring the agreement between the true polyp histology and the expected histology by the CAD was 0.614–0.642, which was higher than that of trainees (n = 6, endoscopists with experience of 100 NBI colonoscopies in <6 months; 0.368–0.401) and almost comparable with that of the experts (n = 3, endoscopists with experience of 2,500 NBI colonoscopies in ≥5 years) (0.649–0.735). The areas under the receiver operating curves for CAD were 0.93–0.95, 0.86–0.89, and 0.89–0.91 for SP, BA/MSMC, and DSMC, respectively. The overall diagnostic accuracy of the CAD was 81.3–82.4%, which was significantly higher than that of the trainees (63.8–71.8%, P < 0.01) and comparable with that of experts (82.4–87.3%). The kappa value and diagnostic accuracies of the trainees improved with CAD assistance: that is, the kappa value increased from 0.368 to 0.655, and the overall diagnostic accuracy increased from 63.8–71.8% to 82.7–84.2%. CAD using a deep-learning model can accurately assess polyp histology and may facilitate the diagnosis of colorectal polyps by endoscopists.
Origin of tuberculosis in the Paleolithic predicts unprecedented population growth and female resistance
Authors: Cardona Pere-Joan , Català Martí , Prats Clara 
Published: January 2020

AbstractCurrent data estimate the origin of Mycobacterium tuberculosis complex (MtbC) infection around 73,000 years before the common era (BCE), and its evolution to “modern” lineages around 46,000 BCE. Being MtbC a major killer of humanity, the question is how both species could persist. To answer this question, we have developed two new epidemiological models (SEIR type), adapted to sex dimorphism and comparing coinfection and superinfection for different MtbC lineages. We have attributed a higher resistance/tolerance to females to explain the lower incidence noted in this sex, a better health status in the Paleolithic compared to the Neolithic, and a higher dissemination of “modern” lineages compared to “ancient” ones. Our findings show the extraordinary impact caused by “modern” lineages, provoking the extinction of the groups infected. This could only be overcomed by an unprecedented population increase (x20 times in 100 years) and helped with the protection generated by previous infection with “ancient” lineages. Our findings also suggest a key role of female resistance against MtbC. This data obliges us to rethink the growth population parameters in the Paleolithic, which is crucial to understanding the survival of both MtbC and humans, and to decipher the nature of human female resistance against TB.
New predictions of 137Cs dynamics in forests after the Fukushima nuclear accident
Authors: Hashimoto Shoji , Imamura Naohiro , Kaneko Shinji , Komatsu Masabumi , Matsuura Toshiya , Nishina Kazuya , Ohashi Shinta 
Published: January 2020

AbstractMost of the area contaminated by the Fukushima Daiichi Nuclear Power Plant accident is covered by forest. In this paper, we updated model predictions of temporal changes in the 137Cs dynamics using the latest observation data and newly provided maps of the predicted 137Cs activity concentration for wood, which is the most commercially important part of the tree body. Overall, the previous prediction and latest observation data were in very good agreement. However, further validation revealed that the migration from the soil surface organic layer to the mineral soil was overestimated for evergreen needleleaf forests. The new prediction of the 137Cs inventory showed that although the 137Cs distribution within forests differed among forest types in the first 5 years, the difference diminished in the later phase. Besides, the prediction of the wood 137Cs activity concentrations reproduced the different trends of the 137Cs activity concentrations for cedar, oak, and pine trees. Our simulation suggests that the changes of the wood 137Cs activity concentration over time will slow down after 5–10 years. Although the model uncertainty should be considered and monitoring and model updating must continue, the study provides helpful information on the 137Cs dynamics within forest ecosystems and the changes in wood contamination.
Pain perception during social interactions is modulated by self-related and moral contextual cues
Authors: Nicolardi Valentina , Panasiti Maria Serena , D’Ippolito Mariagrazia , Pecimo Gian Luigi , Aglioti Salvatore Maria 
Published: January 2020

AbstractDespite the growing interest on the effect of the social context on pain, whether and how different facets of interpersonal interactions modulate pain are still unclear. We tested whether personal (i.e., convenient for the self), moral (i.e., equitability of the transaction) or social (i.e., positive vs. negative feedback from others) valence of an interpersonal interaction differentially affects pain and the perceived fairness. Thirty-two healthy participants played the role of Receivers in a Dictator Game, where a player, the Dictator, determined how to divide a payoff between her/himself and the other player, the Receiver. We manipulated the payoff (pain vs. money), the personal valence (favorable vs. unfavorable offer to participants), the moral valence of the offer (from very iniquitous to equitable), and social valence of the Dictator (social acceptance vs. rejection). Moral and personal valence differentially modulated pain. Lower pain was elicited by iniquity, but also by favorable offers. Moreover, unfavorable offers in the economic game were rated as more unfair, whereas only very iniquitous offers elicited such ratings in the pain game, suggesting that participants valued when Dictators endured extra pain for their benefit. Together, we show that the valence of a social interaction at different levels can independently modulate pain and fairness perception.
Maternal high fat diet consumption reduces liver alpha7 nicotinic cholinergic receptor expression and impairs insulin signalling in the offspring
Authors: Costa S. O. , Souza C. M. , Lanza P. G. , Sartori J. O. , Ignacio-Souza L. M. , Candreva T. , Rodrigues H. G. , Torsoni A. S. , Milanski M. , Torsoni M. A. 
Published: January 2020

AbstractThe activation of nicotinic acetylcholine receptor α7 subunit (α7nAChR) has been associated to anti-inflammatory response in macrophages. High-fat diet (HFD) consumption during pregnancy and lactation impairs the cholinergic anti-inflammatory pathway in liver and white adipose tissue of offspring. In order to evaluate the relationship between damage in the cholinergic anti-inflammatory pathway and insulin resistance (IR) development, the liver of offspring of obese dams was investigated. Additionally, the capacity of α7nAChR activation to reduce IR induced by saturated fatty acid was investigated in hepatoma cell line. Initially, female mice were subjected to either standard chow (SC) or HFD during pregnancy and lactation period. After weaning, only male offspring from HFD dams (HFD-O) and SC dams (SC-O) were fed with the SC diet. Hepatic α7nAChR expression was downregulated, and hepatic TNF-α, IL-1β, and pIKK level, but not pJNK, were elevated in the HFD-O compared to SC-O mice. Besides, hepatic expression of TNF-α in response to lipopolysaccharide (LPS) was higher in HFD-O than SC-O mice. Insulin-stimulated phosphorylation of the AKT was lower in HFD-O compared to SC-O. Additionally, insulin-stimulated phosphorylation of the AKT in KOα7Alb-Cre mice fed HFD was lower than WT mice fed HFD. In hepatoma cell line, palmitate increased IL-6 and TNF-α expressions and pJNK level. These effects were accompanied by reduced capacity of insulin to stimulate AKT phosphorylation. PNU or nicotine reduced cytokine expression and JNK activation, but improved insulin resistance induced by palmitate. Our results suggest that maternal obesity impairs hepatic α7nAChR expression and AKT phosphorylation in the offspring. In vitro studies suggest that α7nAChR activation has potential to reduce deleterious effect of saturated fatty acids on insulin signalling.
Confinement Effect on Porosity and Permeability of Shales
Authors: Goral Jan , Panja Palash , Deo Milind , Andrew Matthew , Linden Sven , Schwarz Jens-Oliver , Wiegmann Andreas 
Published: January 2020

AbstractPorosity and permeability are the key factors in assessing the hydrocarbon productivity of unconventional (shale) reservoirs, which are complex in nature due to their heterogeneous mineralogy and poorly connected nano- and micro-pore systems. Experimental efforts to measure these petrophysical properties posse many limitations, because they often take weeks to complete and are difficult to reproduce. Alternatively, numerical simulations can be conducted in digital rock 3D models reconstructed from image datasets acquired via e.g., nanoscale-resolution focused ion beam–scanning electron microscopy (FIB-SEM) nano-tomography. In this study, impact of reservoir confinement (stress) on porosity and permeability of shales was investigated using two digital rock 3D models, which represented nanoporous organic/mineral microstructure of the Marcellus Shale. Five stress scenarios were simulated for different depths (2,000–6,000 feet) within the production interval of a typical oil/gas reservoir within the Marcellus Shale play. Porosity and permeability of the pre- and post-compression digital rock 3D models were calculated and compared. A minimal effect of stress on porosity and permeability was observed in both 3D models. These results have direct implications in determining the oil-/gas-in-place and assessing the production potential of a shale reservoir under various stress conditions.
Changes in dietary carbon footprint over ten years relative to individual characteristics and food intake in the Västerbotten Intervention Programme
Authors: Hjorth Therese , Huseinovic Ena , Hallström Elinor , Strid Anna , Johansson Ingegerd , Lindahl Bernt , Sonesson Ulf , Winkvist Anna 
Published: January 2020

AbstractThe objective was to examine 10-year changes in dietary carbon footprint relative to individual characteristics and food intake in the unique longitudinal Västerbotten Intervention Programme, Sweden. Here, 14 591 women and 13 347 men had been followed over time. Food intake was assessed via multiple two study visits 1996–2016, using a 64-item food frequency questionnaire. Greenhouse gas emissions (GHGE) related to food intake, expressed as kg carbon dioxide equivalents/1000 kcal and day, were estimated. Participants were classified into GHGE quintiles within sex and 10-year age group strata at both visits. Women and men changing from lowest to highest GHGE quintile exhibited highest body mass index within their quintiles at first visit, and the largest increase in intake of meat, minced meat, chicken, fish and butter and the largest decrease in intake of potatoes, rice and pasta. Women and men changing from highest to lowest GHGE quintile exhibited basically lowest rates of university degree and marriage and highest rates of smoking within their quintiles at first visit. Among these, both sexes reported the largest decrease in intake of meat, minced meat and milk, and the largest increase in intake of snacks and, for women, sweets. More research is needed on how to motivate dietary modifications to reduce climate impact and support public health.
Non-invasive molecular tracking method that measures ocular drug distribution in non-human primates
Authors: Normand Guillaume , Maker Michael , Penraat Jan , Kovach Kellyann , Ghosh Joy G. , Grosskreutz Cynthia , Chandra Sudeep 
Published: January 2020

AbstractIntravitreal (IVT) injection has become the standard route for drug administration in retinal diseases. However, the ability to measure biodistribution of ocular therapeutics in large species remains limited, due to the invasive nature of some techniques or their lack of spatial information. The aim of this study was to develop in cynomolgus monkeys a non-invasive fluorescence imaging technology that enables tracking of IVT-dosed drugs and could be easily translated into humans. Here, we show a proof-of-concept for labeled ranibizumab with observed half-lives of 3.34 and 4.52 days at the retina and in the vitreous, respectively. We further investigate a long acting anti-VEGF antibody, which remains as an agglomerate with some material leaking out until the end of the study at Day 35. Overall, we were able to visualize and measure differences in the in vivo behavior between short and long-acting antibodies, demonstrating the power of the technology for ocular pharmacokinetics.