bluuebunny/crossref_metadata_2025_split huggingface dataset:
Response of vertebrate scavengers to power line and road rights-of-way and its implications for bird fatality estimates
Authors: Bernardino Joana , Bispo Regina , Martins Ricardo C. , Santos Sara , Moreira Francisco 
Published: September 2020

AbstractLinear infrastructures, such as power lines and roads, are an important source of bird mortality. However, little is known on the potential effect of these infrastructures on local scavenger guilds, their foraging activity and the resulting bird carcass removal patterns. This is an important source of bias in studies aiming to quantify bird fatalities due to linear infrastructures. We used camera-traps to record scavenger identity and persistence patterns of bird carcasses placed close to linear infrastructure and nearby controls in two Mediterranean agricultural regions. We found that linear infrastructure influence on scavenger identity varied depending on the region. Contrary to expectations, linear infrastructure presence had either none or a positive effect on carcass persistence, meaning that carcasses placed within power line or road rights-of-way were not removed faster than the ones placed in controls. We conclude that linear infrastructure effect on vertebrate scavenging patterns is likely to be region-specific, and that reliable correction factors for carcass removal-bias in bird fatality estimates require site-specific experiments to characterize local scavenging processes.
Environmental impact of utilization of “produced water” from oil and gas operations in turfgrass systems
Authors: Shaikh Sameera S. , Abu-Dieyeh Mohammed H. , Al Naemi Fatima A. , Ahmed Talaat , Al-Ghouti Mohammad A. 
Published: September 2020

AbstractThis study attempted to use produced water (PW) to irrigate turfgrass species, Cynodon dactylon and Paspalum sp. Assessment on established grasses, heavy metal accumulation and germination tests for weeds and turf grass seeds were conducted to evaluate the impact of PW irrigation. C. dactylon depicted lower tolerance while Paspalum sp. showed better tolerance capacity towards PW. C. dactylon grown from seeds under greenhouse conditions were not able to tolerate more than 30% concentration of PW (4.5% salinity). In comparison to tap water irrigated turf grass, Paspalum sp. was found to accumulate higher concentrations of V and Pb in shoots and Cr, Ni and As in roots. The results of seed germination tests recommended that irrigation with PW is to be performed after turfgrass establishment. Germination tests also revealed that PW could encourage growth of the weed—Chloris virgata while it could discourage growth of Amaranthus viridis and Launaea mucronata. This study suggests that PW could be used for turfgrass as an alternative water resource but only after further research on the long-term scale.
Integrative genomic analysis of salivary duct carcinoma
Authors: Kim Youngwook , Song Sanghoon , Lee Miran , Swatloski Teresa , Kang Joon Ho , Ko Young-Hyeh , Park Woong-Yang , Jeong Han-Sin , Park Keunchil 
Published: September 2020

AbstractSalivary duct carcinoma (SDC) is one of the most aggressive subtypes of salivary gland cancers. Conventional chemotherapy and/or radiation have shown only limited clinical efficacy in the treatment of recurrent or metastatic SDC. Currently, clinically approved targeted-therapeutics are not generally applicable except in very limited cases, and there exists a strong need for the development of treatment against this unique tumor type. To further interrogate genomic features of SDC, we have conducted multi-omic profiling of the SDC to describe the genomic alterations prevalent in this disease. Whole-genome sequencing, whole exome-sequencing and transcriptome sequencing were performed on a discovery cohort of 10 SDC samples. Targeted genomic profiling was performed in additional 32 SDC samples to support the findings obtained from the original discovery cohort. The cancer cohort was characterized by an average mutation burden of 85 somatic exonic mutations per tumor sample. The cohort harbored a mutational signature of BRCA and APOBEC/AID. Several genes, including TP53, RB1, SMAD4, HRAS, APC, PIK3CA and GNAQ were recurrently somatically altered in SDC. A novel fusion gene, generated by genomic rearrangement, MYB-NHSL1, was also noted. Our findings represent a significant layer in the systematic understanding of potentially clinically useful genomic and molecular targets for a subset of recurrent/metastatic SDC.
UQCRH downregulation promotes Warburg effect in renal cell carcinoma cells
Authors: Luo Yanting , Medina Bengtsson Louise , Wang Xuechun , Huang Tianhe , Liu Guoqiang , Murphy Sean , Wang Caiqin , Koren John , Schafer Zachary , Lu Xin 
Published: September 2020

AbstractUbiquinol-cytochrome c reductase hinge protein (UQCRH) is the hinge protein for the multi-subunit complex III of the mitochondrial electron transport chain and is involved in the electron transfer reaction between cytochrome c1 and c. Recent genome-wide transcriptomic and epigenomic profiling of clear cell renal cell carcinoma (ccRCC) by The Cancer Genome Atlas (TCGA) identified UQCRH as the top-ranked gene showing inverse correlation between DNA hypermethylation and mRNA downregulation. The function and underlying mechanism of UQCRH in the Warburg effect metabolism of ccRCC have not been characterized. Here, we verified the clinical association of low UQCRH expression and shorter survival of ccRCC patients through in silico analysis and identified KMRC2 as a highly relevant ccRCC cell line that displays hypermethylation-induced UQCRH extinction. Ectopic overexpression of UQCRH in KMRC2 restored mitochondrial membrane potential, increased oxygen consumption, and attenuated the Warburg effect at the cellular level. UQCRH overexpression in KMRC2 induced higher apoptosis and slowed down in vitro and in vivo tumor growth. UQCRH knockout by CRISPR/Cas9 had little impact on the metabolism and proliferation of 786O ccRCC cell line, suggesting the dispensable role of UQCRH in cells that have entered a Warburg-like state through other mechanisms. Together, our study suggests that loss of UQCRH expression by hypermethylation may promote kidney carcinogenesis through exacerbating the functional decline of mitochondria thus reinforcing the Warburg effect.
Breath methane to hydrogen ratio as a surrogate marker of intestinal dysbiosis in head and neck cancer
Authors: Dharmawardana Nuwan , Goddard Thomas , Woods Charmaine , Watson David I. , Butler Ross , Ooi Eng H. , Yazbeck Roger 
Published: September 2020

AbstractExhaled breath compounds can non-invasively detect head and neck squamous cell carcinoma (HNSCC). Here we investigated exhaled compounds related to intestinal bacterial carbohydrate fermentation. Fasting breath samples were collected into 3 litre FlexFoil PLUS bags from patients awaiting a biopsy procedure for suspected HNSCC. Samples were analysed using a Syft selected ion flow-tube mass spectrometer and a Quintron BreathTracker. Two tailed non-parametric significance testing was conducted with corrections for multiple imputations. 74 patients were diagnosed (histological) with HNSCC and 61 patients were benign (controls). The methane to hydrogen ratio was significantly different between cancer and non-cancer controls (p = 0.0440). This ratio increased with tumour stage with a significant difference between T1 and T4 tumours (p = 0.0259). Hydrogen levels were significantly higher in controls who were smokers (p = 0.0129), with no smoking dependent methane changes. There were no differences in short chain fatty acids between groups. Exhaled compounds of intestinal carbohydrate fermentation can detect HNSCC patients. These findings suggest a modified carbohydrate fermentation profile in HNSCC patients that is tumour stage and smoking status dependent.
Overexpression of ATP sulfurylase improves the sulfur amino acid content, enhances the accumulation of Bowman–Birk protease inhibitor and suppresses the accumulation of the β-subunit of β-conglycinin in soybean seeds
Authors: Kim Won-Seok , Sun-Hyung Jeong , Oehrle Nathan W. , Jez Joseph M. , Krishnan Hari B. 
Published: September 2020

AbstractATP sulfurylase, an enzyme which catalyzes the conversion of sulfate to adenosine 5′-phosphosulfate (APS), plays a significant role in controlling sulfur metabolism in plants. In this study, we have expressed soybean plastid ATP sulfurylase isoform 1 in transgenic soybean without its transit peptide under the control of the 35S CaMV promoter. Subcellular fractionation and immunoblot analysis revealed that ATP sulfurylase isoform 1 was predominantly expressed in the cell cytoplasm. Compared with that of untransformed plants, the ATP sulfurylase activity was about 2.5-fold higher in developing seeds. High-resolution 2-D gel electrophoresis and immunoblot analyses revealed that transgenic soybean seeds overexpressing ATP sulfurylase accumulated very low levels of the β-subunit of β-conglycinin. In contrast, the accumulation of the cysteine-rich Bowman–Birk protease inhibitor was several fold higher in transgenic soybean plants when compared to the non-transgenic wild-type seeds. The overall protein content of the transgenic seeds was lowered by about 3% when compared to the wild-type seeds. Metabolite profiling by LC–MS and GC–MS quantified 124 seed metabolites out of which 84 were present in higher amounts and 40 were present in lower amounts in ATP sulfurylase overexpressing seeds compared to the wild-type seeds. Sulfate, cysteine, and some sulfur-containing secondary metabolites accumulated in higher amounts in ATP sulfurylase transgenic seeds. Additionally, ATP sulfurylase overexpressing seeds contained significantly higher amounts of phospholipids, lysophospholipids, diacylglycerols, sterols, and sulfolipids. Importantly, over expression of ATP sulfurylase resulted in 37–52% and 15–19% increases in the protein-bound cysteine and methionine content of transgenic seeds, respectively. Our results demonstrate that manipulating the expression levels of key sulfur assimilatory enzymes could be exploited to improve the nutritive value of soybean seeds.
Effects of SF6 decomposition components and concentrations on the discharge faults and insulation defects in GIS equipment
Authors: Zhuang Yuan , Hu Xiaotong , Tang Bin , Wang Siwei , Cui Anyang , Hou Keyong , He Yunhua , Zhu Liangqing , Li Wenwu , Chu Junhao 
Published: September 2020

AbstractGas-insulated switchgear (GIS) is widely used across multiple electric stages and different power grid levels. However, the threat from several inevitable faults in the GIS system surrounds us for the safety of electricity use. In order to improve the evaluation ability of GIS system safety, we propose an efficient strategy by using machine learning to conduct SF6 decomposed components analysis (DCA) for further diagnosing discharge fault types in GIS. Note that the empirical probability function of different faults fitted by the Arrhenius chemical reaction model has been investigated into the robust feature engineering for machine learning based GIS diagnosing model. Six machine learning algorithms were used to establish models for the severity of discharge fault and main insulation defects, where identification algorithms were trained by learning the collection dataset composing the concentration of the different gas types (SO2, SOF2, SO2F2, CF4, and CO2, etc.) in the system and their ratios. Notably, multiple discharge fault types coexisting in GIS can be effectively identified based on a probability model. This work would provide a great insight into the development of evaluation and optimization on solving discharge fault in GIS.
Norepinephrine depleting toxin DSP-4 and LPS alter gut microbiota and induce neurotoxicity in α-synuclein mutant mice
Authors: Song Sheng , Liu Jie , Zhang Feng , Hong Jau-Shyong 
Published: September 2020

AbstractThis study examined the genetic mutation and toxicant exposure in producing gut microbiota alteration and neurotoxicity. Homozygous α-synuclein mutant (SNCA) mice that overexpress human A53T protein and littermate wild-type mice received a single injection of LPS (2 mg/kg) or a selective norepinephrine depleting toxin DSP-4 (50 mg/kg), then the motor activity, dopaminergic neuron loss, colon gene expression and gut microbiome were examined 13 months later. LPS and DSP-4 decreased rotarod and wirehang activity, reduced dopaminergic neurons in substantia nigra pars compacta (SNpc), and SNCA mice were more vulnerable. SNCA mice had 1,000-fold higher human SNCA mRNA expression in the gut, and twofold higher gut expression of NADPH oxidase (NOX2) and translocator protein (TSPO). LPS further increased expression of TSPO and IL-6 in SNCA mice. Both LPS and DSP-4 caused microbiome alterations, and SNCA mice were more susceptible. The altered colon microbiome approximated clinical findings in PD patients, characterized by increased abundance of Verrucomicrobiaceae, and decreased abundance of Prevotellaceae, as evidenced by qPCR with 16S rRNA primers. The Firmicutes/Bacteroidetes ratio was increased by LPS in SNCA mice. This study demonstrated a critical role of α-synuclein and toxins interactions in producing gut microbiota disruption, aberrant gut pro-inflammatory gene expression, and dopaminergic neuron loss.
Male-lure type, lure dosage, and fly age at feeding all influence male mating success in Jarvis’ fruit fly
Authors: Wee Suk-Ling , Clarke Anthony R. 
Published: September 2020

AbstractMales of certain Dacini fruit flies are strongly attracted to, and feed upon, plant secondary compounds such as methyl eugenol, raspberry ketone and zingerone. The consumed lure is generally found to induce physiological and behavioural changes that enhance the mating performance of lure-fed males. Male Bactrocera jarvisi respond strongly to zingerone from a young age, but only weakly respond to raspberry ketone. We hypothesized that this selective lure-response would be reflected in the physiological importance of the lure to the fly. We found that zingerone feeding by young males resulted in significantly greater mating success in competitive mating trials with lure-deprived flies, but the mating advantage was lost in older males. Lure dosage had a significant effect on the duration of the mating advantage, for example when fed 20 µg of zingerone, the advantage lasted only 1 day post-feeding, but when fed of 50 µg zingerone the advantage lasted 7 days. Raspberry ketone feeding did not confer any mating advantage to males except at one dosage (50 µg) for 1 day after feeding. When given a choice, B. jarvisi females preferred to mate with zingerone-fed versus to raspberry ketone-fed males. This study revealed lure, dosage and age of fly at time of lure administration are all important factors for maximising lure-enhanced fruit fly mating performance. These findings contribute to a better theoretical understanding of the evolution of fruit fly-lure interactions and may help improve fruit fly pest management via the Sterile Insect Technique through semiochemical-mediated enhancement of sterile male mating performance.
Temporal self-similarity of quantum dynamical maps as a concept of memorylessness
Authors: Utagi Shrikant , Srikanth R. , Banerjee Subhashish 
Published: September 2020

AbstractThe problem of defining quantum non-Markovianity has proven elusive, with various in-equivalent criteria put forth to address it. The concept of CP-indivisibility and the hierarchy of stronger divisibility criteria going up to P-indivisibility, capture a fundamental aspect of memory in quantum non-Markovianity. In practice, however, there can be a memory-like influence associated with divisible channels in the form of weakening, if not reversing, the effects of decoherence. Arguably, such a facet of memory relates to CP-indivisibility as quantum discord relates to entanglement. We concretize this weaker notion of non-Markovianity by identifying it with deviation from “temporal self-similarity”, the property of a system dynamics whereby the propagator between two intermediate states is independent of the initial time $$t_0$$

t
0

. We illustrate this idea through examples, and propose a geometric quantification of temporal self-similarity, and show how our approach complements the divisibility-based criterion of quantum non-Markovianity.
The future of digital health with federated learning
Authors: Rieke Nicola , Hancox Jonny , Li Wenqi , Milletarì Fausto , Roth Holger R. , Albarqouni Shadi , Bakas Spyridon , Galtier Mathieu N. , Landman Bennett A. , Maier-Hein Klaus , Ourselin Sébastien , Sheller Micah , Summers Ronald M. , Trask Andrew , Xu Daguang , Baust Maximilian , Cardoso M. Jorge 
Published: September 2020

AbstractData-driven machine learning (ML) has emerged as a promising approach for building accurate and robust statistical models from medical data, which is collected in huge volumes by modern healthcare systems. Existing medical data is not fully exploited by ML primarily because it sits in data silos and privacy concerns restrict access to this data. However, without access to sufficient data, ML will be prevented from reaching its full potential and, ultimately, from making the transition from research to clinical practice. This paper considers key factors contributing to this issue, explores how federated learning (FL) may provide a solution for the future of digital health and highlights the challenges and considerations that need to be addressed.
The origin of Rhinocerotoidea and phylogeny of Ceratomorpha (Mammalia, Perissodactyla)
Authors: Bai Bin , Meng Jin , Zhang Chi , Gong Yan-Xin , Wang Yuan-Qing 
Published: September 2020

AbstractRhinoceroses have been considered to have originated from tapiroids in the middle Eocene; however, the transition remains controversial, and the first unequivocal rhinocerotoids appeared about 4 Ma later than the earliest tapiroids of the Early Eocene. Here we describe 5 genera and 6 new species of rhinoceroses recently discovered from the early Eocene to the early middle Eocene deposits of the Erlian Basin of Inner Mongolia, China. These new materials represent the earliest members of rhinocerotoids, forstercooperiids, and/or hyrachyids, and bridge the evolutionary gap between the early Eocene ceratomorphs and middle Eocene rhinocerotoids. The phylogenetic analyses using parsimony and Bayesian inference methods support their affinities with rhinocerotoids, and also illuminate the phylogenetic relationships and biogeography of Ceratomorpha, although some discrepancies are present between the two criteria. The nearly contemporary occurrence of various rhinocerotoids indicates that the divergence of different rhinocerotoid groups occurred no later than the late early Eocene, which is soon after the split between the rhinocerotoids and the tapiroids in the early early Eocene. However, the Bayesian tip-dating estimate suggests that the divergence of different ceratomorph groups occurred in the middle Paleocene.
Extreme precipitation in the tropics is closely associated with long-lived convective systems
Authors: Roca Rémy , Fiolleau Thomas 
Published: September 2020

AbstractWater and energy cycles are linked to global warming through the water vapor feedback and heavy precipitation events are expected to intensify as the climate warms. For the mid-latitudes, extreme precipitation theory has been successful in explaining the observations, however, studies of responses in the tropics have diverged. Here we present an analysis of satellite-derived observations of daily accumulated precipitation and of the characteristics of convective systems throughout the tropics to investigate the relationship between the organization of mesoscale convective systems and extreme precipitation in the tropics. We find that 40% of the days with more than 250 mm precipitation over land are associated with convective systems that last more than 24 hours, although those systems only represent 5% of mesoscale convective systems overall. We conclude that long-lived mesoscale convective systems that are well organized contribute disproportionally to extreme tropical precipitation.
Development of the Autonomic Nervous System: Clinical Implications
Authors: Lefcort Frances 
Published: September 2020

AbstractInvestigations of the cellular and molecular mechanisms that mediate the development of the autonomic nervous system have identified critical genes and signaling pathways that, when disrupted, cause disorders of the autonomic nervous system. This review summarizes our current understanding of how the autonomic nervous system emerges from the organized spatial and temporal patterning of precursor cell migration, proliferation, communication, and differentiation, and discusses potential clinical implications for developmental disorders of the autonomic nervous system, including familial dysautonomia, Hirschsprung disease, Rett syndrome, and congenital central hypoventilation syndrome.
Differences in Trochlear Morphology from Native Using a Femoral Component Interfaced with an Anatomical Patellar Prosthesis in Kinematic Alignment and Mechanical Alignment
Authors: Hull Maury L. , Howell Stephen M. 
Published: September 2020

AbstractPatellofemoral complications following total knee arthroplasty can be traced in part to alignment of the femoral component. Kinematic alignment (KA) and mechanical alignment (MA) use the same femoral component but align the component differently. Our objective was to determine differences in trochlear morphology from native for a femoral component interfaced with an anatomical patellar prosthesis in KA and MA. Ten three-dimensional femur-cartilage models were created by combining computed tomography and laser scans of native human cadaveric femurs free of skeletal abnormalities. The femoral component was positioned using KA and MA. Measurements of the prosthetic and native trochlea were made along the arc length of the native trochlear groove and differences from native were computed for the medial-lateral and radial locations of the groove and sulcus angle. Mean medial-lateral locations of the prosthetic groove were within 1.5 and 3.5 mm of native for KA and MA, respectively. Mean radial locations of the prosthetic groove were as large as 5 mm less than native for KA and differences were greater for MA. Sulcus angles of the prosthetic trochlea were 10 degrees steeper proximally, and 10 degrees flatter distally than native for both KA and MA. Largest differences from native occurred for radial locations and sulcus angles for both KA and MA. The consistency of these results with those of other fundamentally different designs which use a modified dome (i.e., sombrero hat) patellar prosthesis highlights the need to reassess the design of the prosthetic trochlea on the part of multiple manufacturers worldwide.