bluuebunny/crossref_metadata_2025_split huggingface dataset:
Adenylosuccinic acid therapy ameliorates murine Duchenne Muscular Dystrophy
Authors: Timpani Cara A. , Goodman Craig A. , Stathis Christos G. , White Jason D. , Mamchaoui Kamel , Butler-Browne Gillian , Gueven Nuri , Hayes Alan , Rybalka Emma 
Published: January 2020

AbstractArising from the ablation of the cytoskeletal protein dystrophin, Duchenne Muscular Dystrophy (DMD) is a debilitating and fatal skeletal muscle wasting disease underpinned by metabolic insufficiency. The inability to facilitate adequate energy production may impede calcium (Ca2+) buffering within, and the regenerative capacity of, dystrophic muscle. Therefore, increasing the metabogenic potential could represent an effective treatment avenue. The aim of our study was to determine the efficacy of adenylosuccinic acid (ASA), a purine nucleotide cycle metabolite, to stimulate metabolism and buffer skeletal muscle damage in the mdx mouse model of DMD. Dystrophin-positive control (C57BL/10) and dystrophin-deficient mdx mice were treated with ASA (3000 µg.mL−1) in drinking water. Following the 8-week treatment period, metabolism, mitochondrial density, viability and superoxide (O2−) production, as well as skeletal muscle histopathology, were assessed. ASA treatment significantly improved the histopathological features of murine DMD by reducing damage area, the number of centronucleated fibres, lipid accumulation, connective tissue infiltration and Ca2+ content of mdx tibialis anterior. These effects were independent of upregulated utrophin expression in the tibialis anterior. ASA treatment also increased mitochondrial viability in mdx flexor digitorum brevis fibres and concomitantly reduced O2− production, an effect that was also observed in cultured immortalised human DMD myoblasts. Our data indicates that ASA has a protective effect on mdx skeletal muscles.
Size discrimination in adult zebrafish (Danio rerio): Normative data and individual variation
Authors: Santacà Maria , Caja Tiziano , Miletto Petrazzini Maria Elena , Agrillo Christian , Bisazza Angelo 
Published: January 2020

AbstractIn humans, aging and neurodegenerative diseases have been found to be associated with impairment in both mathematical abilities and estimation of continuous quantities such as size, weight or distance. Zebrafish (Danio rerio) is rapidly becoming a model for human aging and brain disorders but we currently lack any instrument for rapid assessment of quantity estimation abilities in this species. Here we developed a simple method based on spontaneous preference of zebrafish for using the larger available hole to pass an obstacle. We collected a large amount of data from small groups of zebrafish moving between compartments of their tank and we used these normative data to compare the performance of individually tested fish. Zebrafish significantly discriminated size ratios from 0.60 to 0.91 with their performance decreasing while increasing the size ratio between the smaller and the larger hole presented. On average, individually tested fish showed the same performance, but a large inter-individual variability was observed. Test-retest analyses revealed a good reliability of this test, with 0.60 and 0.75 ratios being the most informative. Experience did not affect individual performance, suggesting the suitability of this test to measure the longitudinal changes and the effects of pharmacological treatments on cognitive abilities.
The role of detours in individual human navigation patterns of complex networks
Authors: Gulyás András , Bíró József , Rétvári Gábor , Novák Márton , Kőrösi Attila , Slíz Mariann , Heszberger Zalán 
Published: January 2020

AbstractDespite its importance for public transportation, communication within organizations or the general understanding of organized knowledge, our understanding of how human individuals navigate complex networked systems is still limited owing to the lack of datasets recording a sufficient amount of navigation paths of individual humans. Here, we analyse 10587 paths recorded from 259 human subjects when navigating between nodes of a complex word-morph network. We find a clear presence of systematic detours organized around individual hierarchical scaffolds guiding navigation. Our dataset is the first enabling the visualization and analysis of scaffold hierarchies whose presence and role in supporting human navigation is assumed in existing navigational models. By using an information-theoretic argumentation, we argue that taking short detours following the hierarchical scaffolds is a clear sign of human subjects simplifying the interpretation of the complex networked system by an order of magnitude. We also discuss the role of these scaffolds in the phases of learning to navigate a network from scratch.
Simultaneous co-localized super-resolution fluorescence microscopy and atomic force microscopy: combined SIM and AFM platform for the life sciences
Authors: Gómez-Varela Ana I. , Stamov Dimitar R. , Miranda Adelaide , Alves Rosana , Barata-Antunes Cláudia , Dambournet Daphné , Drubin David G. , Paiva Sandra , De Beule Pieter A. A. 
Published: January 2020

AbstractCorrelating data from different microscopy techniques holds the potential to discover new facets of signaling events in cellular biology. Here we report for the first time a hardware set-up capable of achieving simultaneous co-localized imaging of spatially correlated far-field super-resolution fluorescence microscopy and atomic force microscopy, a feat only obtained until now by fluorescence microscopy set-ups with spatial resolution restricted by the Abbe diffraction limit. We detail system integration and demonstrate system performance using sub-resolution fluorescent beads and applied to a test sample consisting of human bone osteosarcoma epithelial cells, with plasma membrane transporter 1 (MCT1) tagged with an enhanced green fluorescent protein (EGFP) at the N-terminal.
Repeatability of anterior segment measurements by optical coherence tomography combined with Placido disk corneal topography in eyes with keratoconus
Authors: Schiano-Lomoriello Domenico , Bono Valeria , Abicca Irene , Savini Giacomo 
Published: January 2020

AbstractCorneal tomography is an important tool to identify and follow up eyes with keratoconus. Our study evaluate the repeatability of the automatic measurements provided in keratoconic eyes by a new anterior-segment optical coherence tomographer (AS-OCT) combined with Placido-disk topography (MS-39, CSO) and assess their agreement with the corresponding measurements taken with a rotating Scheimpflug camera combined with Placido-disk topography (Sirius, CSO). Mean simulated keratometry, posterior and total corneal power, total corneal astigmatism, corneal asphericity, thinnest corneal thickness, epithelial thickness, corneal diameter, and aqueous depth were evaluated. Repeatability was assessed using test–retest variability, the coefficient of variation, and the intraclass correlation coefficient; agreement was assessed by the 95% limits of agreement. Good repeatability was achieved for most parameters. Moderate repeatability was found for total corneal astigmatism measurements. The repeatability of mean simulated keratometry and total corneal power measurements worsened with more severe stages of keratoconus with a statistically significant relationship between the individual coefficient of variation and corneal power values. Agreement with the Scheimpflug camera was moderate for aqueous depth and thinnest corneal thickness and poor for most other measured parameters. The good repeatability of automatic measurements suggests the new AS-OCT device to be a viable option in clinical practice of eyes with keratoconus.
Plasma microRNA levels in male and female children with cystic fibrosis
Authors: Mooney C. , McKiernan P. J. , Raoof R. , Henshall D. C. , Linnane B. , McNally P. , Glasgow A. M. A. , Greene C. M. 
Published: January 2020

AbstractA gender gap exists in cystic fibrosis (CF). Here we investigate whether plasma microRNA expression profiles differ between the sexes in CF children. MicroRNA expression was quantified in paediatric CF plasma (n = 12; six females; Age range:1–6; Median Age: 3; 9 p.Phe508del homo- or heterozygotes) using TaqMan OpenArray Human miRNA Panels. Principal component analysis indicated differences in male versus female miRNA profiles. The miRNA array analysis revealed two miRNAs which were significantly increased in the female samples (miR-885-5p; fold change (FC):5.07, adjusted p value: 0.026 and miR-193a-5p; FC:2.6, adjusted p value: 0.031), although only miR-885-5p was validated as increased in females using specific qPCR assay (p < 0.0001). Gene ontology analysis of miR-885-5p validated targets identified cell migration, motility and fibrosis as processes potentially affected, with RAC1-mediated signalling featuring significantly. There is a significant increase in miR-885-5p in plasma of females versus males with CF under six years of age.
Neutrophils do not impact viral load or the peak of disease severity during RSV infection
Authors: Kirsebom Freja , Michalaki Christina , Agueda-Oyarzabal Marina , Johansson Cecilia 
Published: January 2020

AbstractLung and airway neutrophils are a hallmark of severe disease in infants with respiratory syncytial virus (RSV)-induced lower respiratory tract infections. Despite their abundance in the lungs during RSV infection of both mice and man, the role of neutrophils in viral control and in immune pathology is not clear. Here, antibody mediated neutrophil depletion was used to investigate the degree to which neutrophils impact the lung immune environment, the control of viral replication and the peak severity of disease after RSV infection of mice. Neutrophil depletion did not substantially affect the levels of inflammatory mediators such as type I interferons, IL-6, TNF-α or IL-1β in response to RSV. In addition, the lack of neutrophils did not change the viral load during RSV infection. Neither neutrophil depletion nor the enhancement of lung neutrophils by administration of the chemoattractant CXCL1 during RSV infection affected disease severity as measured by weight loss. Therefore, in this model of RSV infection, lung neutrophils do not offer obvious benefits to the host in terms of increasing anti-viral inflammatory responses or restricting viral replication and neutrophils do not contribute to disease severity.
Nanodisc technology facilitates identification of monoclonal antibodies targeting multi-pass membrane proteins
Authors: Gardill Bernd , Huang Jerry , Tu Lawrence , Van Petegem Filip , Oxenoid Kirill , Thomson Christy A. 
Published: January 2020

AbstractMulti-pass membrane proteins are important targets of biologic medicines. Given the inherent difficulties in working with membrane proteins, we sought to investigate the utility of membrane scaffold protein nanodiscs as a means of solubilizing membrane proteins to aid antibody discovery. Using a model multi-pass membrane protein, we demonstrate how incorporation of a multi-pass membrane protein into nanodiscs can be used in flow cytometry to identify antigen-specific hybridoma. The use of target protein-loaded nanodiscs to sort individual hybridoma early in the screening process can reduce the time required to identify antibodies against multi-pass membrane proteins.
Exceptional Concentrations of Gold Nanoparticles in 1,7 Ga Fluid Inclusions From the Kola Superdeep Borehole, Northwest Russia
Authors: Prokofiev V. Yu. , Banks D. A. , Lobanov K. V. , Selektor S. L. , Milichko V. A. , Akinfiev N. N. , Borovikov A. A. , Lüders V. , Chicherov M. V. 
Published: January 2020

AbstractIn the drill core of the Kola super-deep borehole (SG-3, 12,262 m depth) gold-bearing rocks of Archaean age have been located at depths of 9,500 to 11,000 m. In veins, between 9,052 and 10,744 m, within this gold zone, quartz contains fluid inclusions with gold nanoparticles. There are 4 types of fluid inclusions (1) gas inclusions of dense CO2, (2) liquid-vapor two-phase aqueous inclusions, (3) three-phase inclusions with NaCl daughter crystals, and (4) CO2-aqueous inclusions. In all inclusion types, there are extremely high concentrations of gold. The highest gold concentrations were found in the type 3 and 4 fluid inclusions with an average concentration of c. 750 ppm and may be as high as 6,000 ppm. The presence of gold as nanoparticles in the solutions of these fluid inclusions was determined by optical and spectroscopic methods. We suggest that these fluids could be a precursor of “orogenic gold fluids” which, at the gold concentrations determined, would reduce the requirements for large volumes of metamorphic fluids to form orogenic ore deposits. Further, as nanoparticles, gold could be transported in larger amounts than in true solution.
Hypoxic environment may enhance migration/penetration of endocrine resistant MCF7- derived breast cancer cells through monolayers of other non-invasive cancer cells in vitro
Authors: Barrak Nora H. , Khajah Maitham A. , Luqmani Yunus A. 
Published: January 2020

Abstract The response of cancer cells to hypoxic conditions found within the interior of a tumor mass is mediated through the hypoxia inducible factor (HIF) cascade and is thought to promote metastasis. However, given their distant proximity from blood vessels as compared to normoxic cells at the vascularised tumor periphery, it is uncertain if these cells can migrate through the tumor mass to gain access. Hypoxia was simulated by exposure to cobalt chloride or deferoxamine in normal (MCF10A) and cancerous [estrogen receptor (ER)−ve (pII), and ER +ve (YS1.2/ EII)] cells. In this report, HIF1α expression and localization was measured using western blotting, ELISA, and immunofluorescence, cell proliferation by MTT assay, motility and invasion by wound healing, live cell imaging, matrigel and co-culture in chambered slides. We found that the expression and nuclear translocation of HIF1α was significantly elevated by hypoxia, which inhibited cell proliferation, but significantly increased motility of pII cells and their penetration into and through a dense layer of adjacent EII cells, as well as their selective emergence out of a co-culture. These data suggest that endocrine resistant pII cancer cells, having undergone epithelial to mesenchymal transition are able to penetrate through other cell layers, with possible enhancement in response to hypoxia.
Trueness and precision of intraoral scanners in the maxillary dental arch: an in vivo analysis
Authors: Winkler Jonas , Gkantidis Nikolaos 
Published: January 2020

AbstractIntraoral three-dimensional imaging has gained great interest in dentistry as a mean to generate risk-free imprints of the oral cavity. Accurate intraoral models facilitate proper diagnosis, growth assessment, outcome evaluation, and 3D printing applications. Here, in an actual clinical setup on 12 subjects, we evaluate the trueness and precision of two widely used intraoral scanners (TRIOS 3, 3Shape and CS 3600, Carestream), using an industrial scanner (Artec Space Spider) as a reference. Surface based matching was implemented using the iterative closest point algorithm (ICP). Trueness of the intraoral scans was analyzed by measuring their distance from the reference scan, in the upper buccal front area. Precision was tested through the distance of repeated scans regarding the whole dental arch, following superimpositions in the buccal front and in the whole dental arch area. TRIOS 3 displayed slightly higher precision (approximately 10 μm) compared to CS 3600, only after superimposition on the whole dental arch (p < 0.05). Both intraoral scanners showed good performance and comparable trueness (median: 0.0154 mm; p> 0.05). However, in individual cases and in various, not spatially defined areas, higher imprecision was evident. Thus, the intraoral scanners’ appropriateness for highly demanding, spatially extended clinical applications remains questionable.
Association Between a Comprehensive Movement Assessment and Metabolically Healthy Overweight Obese Adults
Authors: MacLeod Luke , Bouchard Danielle R. , Hébert Jeffrey J. , Boudreau Jonathan G. , Sénéchal Martin 
Published: January 2020

AbstractPhysical activity (PA) and sedentary behavior are associated with metabolic health in overweight and obese individuals. However, the role of comprehensive health-related movement guidelines on PA, recreational screen time, and sleep among Metabolically Healthy Overweight-Obese (MHO) individuals is unknown. We investigated differences in comprehensive movement assessment scores between adults classified as MHO or Non-MHO. The sample included 513 adults (46.2% male), aged 19 to 85 years, body mass index (BMI) ≥ 25, from cycle 2005–2006 of the National Health and Nutrition Examination Survey. Comprehensive movement assessment outcomes were defined as meeting modified 24-Hour Movement Guidelines criteria, with thresholds adapted for adults. 13.8% of participants were MHO (normal serum glucose, triglycerides, HDL-cholesterol, and systolic and diastolic blood pressure). Only 1.4% of MHO participants met all guidelines. MHO and Non-MHO participants had similar comprehensive movement assessment scores (MHO: 18.3% vs. Non-MHO: 10.9%; p = 0.072). MHO individuals had less continuous recreational screen time than Non-MHO individuals (1.8 ± 1.4 hrs/day vs. 2.5 ± 1.6 hrs/day; p < 0.001). Meeting the recreational screen time recommendation was the only variable associated with the MHO phenotype (OR:4.84 95%CI: 2.33–10.07). This association remained after adjusting for age, sex, ethnicity, education, and BMI (OR: 3.53 95%CI: 1.72–7.24). Our results suggest the importance of limiting recreational screen time in adults to optimize cardiometabolic risk profile in individuals living with overweight or obesity. Using movement guidelines with a screen time component to assess the risk associated with health outcomes in adults appears to provide a better assessment.
DNA hypomethylation during MSC chondrogenesis occurs predominantly at enhancer regions
Authors: Barter Matt J. , Bui Catherine , Cheung Kathleen , Falk Julia , Gómez Rodolfo , Skelton Andrew J. , Elliott Hannah R. , Reynard Louise N. , Young David A. 
Published: January 2020

AbstractRegulation of transcription occurs in a cell type specific manner orchestrated by epigenetic mechanisms including DNA methylation. Methylation changes may also play a key role in lineage specification during stem cell differentiation. To further our understanding of epigenetic regulation in chondrocytes we characterised the DNA methylation changes during chondrogenesis of mesenchymal stem cells (MSCs) by Infinium 450 K methylation array. Significant DNA hypomethylation was identified during chondrogenic differentiation including changes at many key cartilage gene loci. Integration with chondrogenesis gene expression data revealed an enrichment of significant CpGs in upregulated genes, while characterisation of significant CpG loci indicated their predominant localisation to enhancer regions. Comparison with methylation profiles of other tissues, including healthy and diseased adult cartilage, identified chondrocyte-specific regions of hypomethylation and the overlap with differentially methylated CpGs in osteoarthritis. Taken together we have associated DNA methylation levels with the chondrocyte phenotype. The consequences of which has potential to improve cartilage generation for tissue engineering purposes and also to provide context for observed methylation changes in cartilage diseases such as osteoarthritis.
Matrix metallopeptidase expression and modulation by transforming growth factor-β1 in equine endometrosis
Authors: Szóstek-Mioduchowska Anna , Słowińska Mariola , Pacewicz Joanna , Skarzynski Dariusz J. , Okuda Kiyoshi 
Published: January 2020

AbstractEquine endometrial fibrosis (endometrosis) is described as a degenerative chronic condition in the uterus. Its characteristic feature is excessive deposition of extracellular matrix (ECM) components around the endometrial glands and stroma. Although matrix metallopeptidases (MMPs) that mediate ECM turnover are important factors in the process of fibrosis, knowledge of their expression and regulation in endometrosis is limited. In other species, one of the important regulators of MMPs and tissue inhibitors of MMPs (TIMPs) is transforming growth factor (TGF)-β1. The goal of this study was to determine (i) endometrial expression of MMPs and TIMPs during endometrosis and (ii) the effect of TGF-β1 on expression of MMPs and TIMPs in equine endometrial fibroblasts and epithelial cells. In the follicular phase of the estrous cycle, MMP-1, -2, -9, and TIMP concentrations were higher during endometrosis than in healthy endometrium (P < 0.05). In the midluteal phase, MMP-3 concentration was lower in severe endometrosis compared to healthy endometrium (P < 0.05). In fibroblasts, TGF-β1 upregulated MMP-1, -9, -13, and TIMP1, but downregulated MMP-3 secretion (P < 0.05). In epithelial cells, TGF-β1 upregulated MMP-1, -9, -13, and TIMP secretion (P < 0.05). Endometrial expression of MMPs and TIMPs is altered during endometrosis. TGF-β1 is a regulator of endometrial ECM remodeling via its effect on MMPs and TIMPs in equine endometrial fibroblasts and epithelial cells.
Serum miRNA as a possible biomarker in the diagnosis of bipolar II disorder
Authors: Lee Sheng-Yu , Lu Ru-Band , Wang Liang-Jen , Chang Cheng-Ho , Lu Ti , Wang Tzu-Yun , Tsai Kuo-Wang 
Published: January 2020

AbstractThe diagnosis of Bipolar II disorder (BD-II) is currently based on the patients’ description of symptoms and clinical behavioral observations. This study explored the possibility of miRNA in peripheral blood (serum) as a specific biomarker for BD-II. We identified 6 candidate miRNAs to differentiate BD-II patients from controls using next-generation sequencing. We then examined these candidate miRNAs using real-time PCR in the first cohort (as training group) of 79 BD-II and 95 controls. A diagnostic model was built based on these candidate miRNAs and then tested on an individual testing group (BD-II: n = 20, controls: n = 20). We found that serum expression levels of miR-7-5p, miR-23b-3p, miR-142-3p, miR-221-5p, and miR-370-3p significantly increased in BD-II compared with controls in the first cohort, whereas that of miR-145-5p showed no significant difference. The diagnostic power of the identified miRNAs was further analyzed using receiver-operating characteristic (ROC). Support vector machine (SVM) measurements revealed that a combination of the significant miRNAs reached good diagnostic accuracy (AUC: 0.907). We further examined an independent testing group and the diagnostic power reached fair for BD-II (specificity = 90%, sensitivity = 85%). We constructed miRNA panels using SVM model, which may aid in the diagnosis for BD-II.