bluuebunny/crossref_metadata_2025_split huggingface dataset:
Change in age distribution of the injuries and comparison of different scoring tools in predicting mortality among geriatric trauma patients
Authors: Jiang Libing , Zheng Zhongjun , Zhang Mao 
Published: September 2020

Abstract
Purpose: The aim of this study was to describe the age change tendency of trauma patients and to test the accuracy of different scoring tools in prediction of in-hospital mortality in case of geriatric trauma.Methods: Annual reports released by the National Trauma Database (NTDB) in the United States from 2005 to 2015 and the Trauma Register DGU® in German from 1994 to 2012 were used to describe the age change tendency of trauma patients. Secondary analysis of a single-center cohort study conducted among 311 severely injured geriatric trauma patients in a level Ⅰ trauma center in Switzerland was completed. According to the in-hospital survival status, patients were divided into survival group and non-survival group. Receiver Operating Characteristic Curve (ROC) analysis was used to evaluated the predictive performance of the ISS (injury severity score); NISS (new injury severity score), APACHE Ⅱ (Acute Physiology and Chronic Health Evaluation Ⅱ), SPAS Ⅱ (simplified acute physiology score Ⅱ) and TRISS (Trauma and Injury Severity Score) in prediction of in-hospital mortality among geriatric trauma patients. Results: The analysis of the NTDB showed the proportion of geriatric trauma increased from 18% to 30% from 2005 to 2015. The analysis of the DGU® showed the mean age of trauma patients rose from 39.11 in 1993 to 51.10 in 2013, and the proportion of patients aged ≥60 rose from 16.5% to 37.5%. The secondary analysis indicated one hundred and sixty-four (52.73%) patients died in the hospital. The ISS, NISS, APACHE Ⅱ, and SAPS Ⅱ in the death group were significantly higher than those in the survival group, and the TRISS in the death group was significantly lower than those in the survival group. The AUC of the ISS, NISS, TRISS, APACHE Ⅱ, and SAPS Ⅱ was 0.807, 0.850, 0.828, 0.715 and 0.725, respectively.Conclusion: The total number of geriatric trauma is increasing as the population ages. The accuracy of ISS, NISS and TRISS was higher than the accuracy of the APACHE Ⅱ and SAPS Ⅱ to predict in-hospital mortality in case of geriatric trauma.
Extra-Hepatic Comorbidity Burden Significantly Increases 90-day Mortality in Patients with Cirrhosis and High Model for Endstage Liver Disease
Authors: Coppel Scott , Mathur Karan , Ekser Burcin , Patidar Kavish R , Orman Eric , Desai Archita P , Gomez Eduardo Vilar , Kubal Chandrashekhar , Chalasani Naga P , Nephew Lauren , Ghabril Marwan 
Published: September 2020

Abstract
BackgroundWe examined how extra-hepatic comorbidity burden impacts mortality in patients with cirrhosis referred for liver transplantation (LT).MethodsAdults with cirrhosis evaluated for their first LT in 2012 were followed through their clinical course with last follow up in 2019. Extra-hepatic comorbidity burden was measured using the Charlson Comorbidity Index (CCI). The endpoints were 90-day transplant free survival (Cox-Proportional Hazard regression), and overall mortality (competing risk analysis).ResultsThe study included 340 patients, mean age 56±11, 63% male and MELD-Na 17.2±6.6. The CCI was 0 (no comorbidities) in 44%, 1-2 in 44% and >2 (highest decile) in 12%, with no differences based on gender but higher CCI in patients with fatty and cryptogenic liver disease. Thirty-three (10%) of 332 patients not receiving LT within 90 days died. Beyond MELD-Na, the CCI was independently associated with 90-day mortality (hazard ratio (HR), 1.32 (95% confidence interval (CI) 1.02–1.72). Ninety-day mortality was specifically increased with higher CCI category and MELD ≥ 18 (12% (CCI=0), 22% (CCI=1-2) and 33% (CCI>2), (p=0.002)) but not MELD-Na ≤17. At last follow-up, 69 patients were alive, 100 underwent LT and 171 died without LT. CCI was associated with increased overall mortality in the competing risk analysis (Sub-HR 1.24, 95%CI 1.1-1.4 ).ConclusionsExtra-hepatic comorbidity burden significantly impacts short-term mortality in patients with cirrhosis and high MELD-Na. This has implications in determining urgency of LT and mortality models in cirrhosis and LT waitlisting, especially with an ageing population with increasing prevalence of fatty liver disease.
Choroidal vessel density in unilateral hyperopic amblyopia using en-face optical coherence tomography
Authors: Araki Syunsuke , Miki Atsushi , Goto Katsutoshi , Yamashita Tsutomu , Yoneda Tsuyoshi , Fujiwara Atsushi , Haruishi Kazuko , Ieki Yoshiaki , Kiryu Junichi , Maehara Goro , Yaoeda Kiyoshi 
Published: September 2020

Abstract
Background Structural changes of the choroid, such as choroidal thickening, have been indicated in amblyopic eyes with hyperopic anisometropia as compared to fellow or healthy eyes. The purpose of the present study was to investigate choroidal vascular density (CVD) in children with unilateral hyperopic amblyopia.Methods This study included 88 eyes of 44 patients with unilateral amblyopia due to hyperopic anisometropia with or without strabismus and 29 eyes of 29 age-matched normal controls. The CVD of Haller's layer was quantified from en-face images constructed by 3-dimensional swept-source optical coherence tomography images flattened relative to Bruch's membrane. The analysis area was a 3×3-mm square of macula after magnification correction. Relationships between CVD and other parameters [best-corrected visual acuity (BCVA), refractive error, axial length and subfoveal choroidal thickness (SFCT)] were investigated, and CVDs were compared between amblyopic, fellow, and normal control eyes.Results Mean CVD was 59.11 ± 0.66% in amblyopic eyes, 59.23 ± 0.81% in fellow eyes, and 59.29 ± 0.74% in normal control eyes. CVD showed a significant positive relationship with SFCT (p=0.005), but no relationships with other parameters. No significant differences in CVD were evident among amblyopic, fellow, and normal control eyes after adjusting for SFCT (p=0.502).Conclusions CVD was unrelated to BCVA, and CVD did not differ significantly among amblyopic, fellow and normal control eyes. These results suggest that the local CVD of Haller's layer is unaffected in unilateral hyperopic amblyopic eyes.
Rapidly Reversible Organic Crystalline Switch for Conversion of Heat into Mechanical Energy
Authors: Gassensmith Jeremiah , Dharmarwardana Madushani , Pakhira Srimanta , Welch Raymond , Caicedo-Narvaez Carlos , Luzuriagaa Michael , Arimillia Bhargav , McCandlessa Gregory , Fahimib Babak , Mendoza-Cortes Jose 
Published: September 2020

Abstract
Solid state thermosalience—a sudden exertion of an expansive or contractive physical force following a temperature change in a solid state compound—is rare, few are reversible systems, and most of these are limited to a dozen or so cycles before the crystal degrades or they reverse slowly over the course of many minutes or even hours. In this work, we show a fully reversible actuator that is stable at room temperature for multiple years and is capable of actuation for more than two hundred cycles at near ambient temperature. Specifically, the crystals shrink to 90% of its original length instantaneously upon heating beyond 45 °C and expands back to its original length upon cooling below 35 °C. This temperature regime is important because it occurs around physiologically important temperatures. Furthermore, the phase transition occurs instantaneously, with little obvious hysteresis, allowing us to create real-time actuating thermal fuses that cycle between on and off rapidly.
A Proteomic Repertoire of Autoantigens Identified from the Classic Autoantibody Clinical Test Substrate HEp-2 Cells
Authors: Wang Julia Y , Zhang Wei , Rho Jung-hyun , Roehrl Michael W , Roehrl Michael H. 
Published: September 2020

Abstract
Background: Autoantibodies are a hallmark of autoimmune diseases. Autoantibody screening by indirect immunofluorescence staining of HEp-2 cells with patient sera is a current standard in clinical practice. Differential diagnosis of autoimmune disorders is based on commonly recognizable nuclear and cytoplasmic staining patterns. In this study, we attempted to identify as many autoantigens as possible from HEp-2 cells using a unique proteomic DS-affinity enrichment strategy.Methods: HEp-2 cells were cultured and lysed. Total proteins were extracted from cell lysate and fractionated with DS-Sepharose resins. Proteins were eluted with salt gradients, and fractions with low to high affinity were collected and sequenced by mass spectrometry. Literature text mining was conducted to verify the autoantigenicity of each protein. Protein interaction network and pathway analyses were performed on all identified proteins.Results: This study identified 107 proteins from fractions with low to high DS-affinity. Of these, 78 are verified autoantigens with previous reports as targets of autoantibodies, whereas 29 might be potential autoantigens yet to be verified. Among the 107 proteins, 82 can be located to nucleus and 15 to the mitotic cell cycle, which may correspond to the dominance of nuclear and mitotic staining patterns in HEp-2 test. There are 55 vesicle-associated proteins and 12 ribonucleoprotein granule proteins, which may contribute to the diverse speckled patterns in HEp-2 stains. There are also 32 proteins related to the cytoskeleton. Protein network analysis indicates that these proteins have significantly more interactions among themselves than would be expected of a random set, with the top 3 networks being mRNA metabolic process regulation, apoptosis, and DNA conformation change.Conclusions: This study provides a proteomic repertoire of confirmed and potential autoantigens for future studies, and the findings are consistent with a mechanism for autoantigenicity: how self-molecules may form molecular complexes with DS to elicit autoimmunity. Our data contribute to the molecular etiology of autoimmunity and may deepen our understanding of autoimmune diseases.
Inhibition of Ref(2)P, the Drosophila homologue of p62/SQSTM1, increases lifespan and leads to motor function decline
Authors: Hurley Emily P. , Staveley Brian Ernest 
Published: September 2020

Abstract
Objective Sequestosome 1 (p62/SQSTM1) is a multifunctional scaffold/adaptor protein encoded by the p62/SQSTM1 gene with function in cellular homeostasis. Mutations in the p62/SQSTM1 gene have been known to be associated with patients with Amyotrophic Lateral Sclerosis (ALS), Frontotemporal Dementia (FTD), and Parkinson Disease (PD). The aim of the present study was to create a novel model of human neurogenerative disease in Drosophila melanogaster by altering the expression of Ref(2)P, the Drosophila orthologue of the human p62/SQSTM1 gene. Ref(2)P expression was altered in all neurons, the dopaminergic neurons and in the motor neurons, with longevity and locomotor function assessed over time.Results Inhibition of Ref(2)P resulted in a significantly increased median lifespan in the motor neurons, followed by a severe decline in motor skills. Inhibition of Ref(2)P in the dopaminergic neurons resulted in a significant, but minimal increase in median lifespan, accompanied by a drastic decline in locomotor function. Inhibition of Ref(2)P in the ddc-Gal4-expressing neurons resulted in a significant increase in median lifespan, while dramatically reducing motor function.
Squeezed lasing
Authors: Muñoz Carlos Sánchez , Jaksch Dieter 
Published: September 2020

Abstract
We introduce the idea of a squeezed laser, in which a squeezed cavity mode develops a macroscopic photonic occupation powered by stimulated emission. Above the lasing threshold, the emitted light retains both the spectral purity inherent of a laser and the photon correlations characteristic of a photonic mode with squeezed quadratures. Our proposal, which can be implemented in optical setups, relies on the parametric driving of the cavity and dissipative stabilization by a broadband squeezed vacuum. We show that the squeezed laser can find applications going beyond those of standard lasers thanks to the squeezed character, such as enhanced operation in multi-photon microscopy or Heisenberg scaling of the Fisher information in quantum parameter estimation.
Comparative Studies on the Diagnostic Validity of Widal and Evaluation of Interferon Gamma Response in Patients Investigated for Typhoid Fever
Authors: Nura Mujahid , Mohammed Yusuf , Ibrahim Yusuf , Sani Nura , Abdulkadir Bashir , Wada Mudassir 
Published: September 2020

Abstract
Typhoid fever remains a public health challenge in developing countries. In Nigeria, patients usually come with complains of fever and other symptoms typical of febrile illnesses where resource limitation in healthcare facilities necessitates the use of screening tests for diagnosis. Widal test is widely used due to its simplicity. However, the specificity of this test has been debated. The present study compared the diagnostic validity of Widal to blood culture and evaluated interferon gamma response among the study participants. A total of 90 patients with complain of fever and other symptoms suggestive of typhoid fever were recruited for the study. Widal serology, automated blood culture and interferon gamma concentration were conducted using rapid antibody detection kit, BACTEC and sandwich enzyme linked immunosorbent assay (ELISA) respectively. Of the 90 samples tested, 63 (70.0%) were positive for anti Typhi O antigen while 42 (46.7%) were positive for anti- Typhi H antigen. Similarly, 18 (20%) of the patients had non-S. Typhi culture positivity while 72 (80%) had no bacteria isolated. Overall, 0 (0%) of the cases had S. Typhi positive culture. Fisher’s exact test suggests a significant difference between blood culture status and prevalence of anti-S. Typhi H antigen. Interferon gamma concentration was found to be significantly associated with blood culture status as plasma interferon gamma levels increased with bacteraemia. Fisher’s exact test showed a strong statistical relationship between interferon gamma concentration and blood culture (p=0.003). Interferon gamma has a direct proportionality with non- S. Typhi culture as such, could be a good marker for the development of an alternative screening test, possibly an interferon gamma based detection system for typhoid fever. However, further research is required to implement that.
MolDiscovery: Learning Mass Spectrometry Fragmentation of Small Molecules
Authors: Mohimani Hosein , Cao Liu , Guler Mustafa , Tagirdzhanov Azat , Gurevich Alexey 
Published: September 2020

Abstract
Identification of small molecules is a critical task in various areas of life science. Recent advances in mass spectrometry have enabled the collection of tandem mass spectra of small molecules from hundreds of thousands of environments. To identify which molecules are present in a sample, one can search mass spectra collected from the sample against millions of molecular structures in small molecule databases. This is a challenging task as currently it is not clear how small molecules are fragmented in mass spectrometry. The existing approaches use the domain knowledge from chemistry to predict fragmentation of molecules. However, these rule-based methods fail to explain many of the peaks in mass spectra of small molecules. Recently, spectral libraries with tens of thousands of labelled mass spectra of small molecules have emerged, paving the path for learning more accurate fragmentation models for mass spectral database search. We present molDiscovery, a mass spectral database search method that improves both efficiency and accuracy of small molecule identification by (i) utilizing an efficient algorithm to generate mass spectrometry fragmentations, and (ii) learning a probabilistic model to match small molecules with their mass spectra. We show our database search is an order of magnitude more efficient than the state-of-the-art methods, which enables searching against databases with millions of molecules. A search of over 8 million spectra from the Global Natural Product Social molecular networking infrastructure shows that our probabilistic model can correctly identify nearly six times more unique small molecules than previous methods. Moreover, by applying molDiscovery on microbial datasets with both mass spectral and genomics data we successfully discovered the novel biosynthetic gene clusters of three families of small molecules.

Availability: The command-line version of molDiscovery and its online web service through the GNPS infrastructure are available at https://github.com/mohimanilab/molDiscovery.
Effects of Briquettes with Different Crack Structures on Propagation Characteristics of Ultrasonic Waves under Wetting Conditions
Authors: Wang Gang , Li Jinzhou , Li Huaixing , Liu Zhiyuan , Guo Yanpei , Liu Xianglan 
Published: September 2020

Abstract
In order to examine the effect of briquettes with different crack structures on ultrasonic characteristics under different wetting conditions, a series of ultrasonic testing are carried out on briquettes at different wetting heights and the ultrasonic characteristics in these coal samples are explored. The results show that ultrasonic amplitude is positively correlated with the emission voltage, whereas ultrasonic frequency is negatively correlated with the emission voltage. Changes in both are closely related to the particle size and density. The ultrasonic velocity is positively correlated with the wetting degree. Sample mass has the greatest effect on the ultrasonic velocity, followed by particle size, and pressure has the smallest effect. At dry stage, ultrasonic velocity in gas coal is less than that in bituminous coal. The opposite is true in the fully wet state. The influence of crack thickness on ultrasonic velocity gradually increases with the wetting degree increasing. At dry stage, the velocity gradually increases with the crack dip increasing, while as the wetting height increasing, magnitude of velocity increase gradually decreases with the dip increasing. The ultrasonic attenuation in the briquettes reduces with the emission voltage enhancing. The attenuation decreases with sample particle size, crack thickness and crack size decreasing and with sample mass, pressure and crack dip increasing. The ultrasonic attenuation shows a trend of increase before decrease with the wetting height increasing. The attenuation of ultrasonic wave increases with wave velocity increasing for intact samples and shows a trend of increase before decrease for cracked samples.
Silicon thin film transistor-based aptamer sensor for COVID-19 detection
Authors: Farrow Thomas , Laumier Siriny , Sandall Ian , Zalinge Harm van 
Published: September 2020

Abstract
Since the beginning of the coronavirus disease 2019 (COVID-19) in December 2019 and the current lack to date of specific drugs or vaccinations to cope with the disease, it has become apparent that the surest way of dealing with this is through early diagnosis and management. Current testing has shown to be unable to rapidly and accurately provide the results required to restrict the spread. Here we report the use of an intrinsic silicon thin film transistor functionalised with aptamers designed to attach to the spike protein of COVID-19. It is shown that a linear response can be obtained in a concentration of 10 fM and 10 pM, and that the relative response is independent of the applied potential allowing a sensory system to fine tune the applied potential to facilitate the interpretation of the results.
Elovanoids downregulate canonical SARS-CoV-2 cell-entry mediators and enhance protective signaling in human alveolar cells
Authors: Calandria Jorgelina , Bhattacharjee Surjyadipta , Kautzmann Marie-Audrey I. , Asatryan Aram , Gordon William C. , Do Khanh V. , Jun Bokkyoo , Mukherjee Pranab K. , Petasis Nicos A. , Bazan Nicolas G. 
Published: September 2020

Abstract
The pro-homeostatic lipid mediators elovanoids (ELVs) attenuate cell binding and entrance of the SARS-CoV-2 receptor-binding domain (RBD) in human primary alveoli cells in culture. We uncovered that very-long-chain polyunsaturated fatty acid precursors (VLC-PUFA,n-3) activate ELV biosynthesis in lung cells. Both ELVs and their precursors reduce the binding to RBD. ELVs downregulate angiotensin-converting enzyme 2 (ACE2) and enhance the expression of a set of protective proteins hindering cell surface virus binding and upregulating defensive proteins against lung damage. These findings open avenues for potential preventive and disease-modifiable therapeutic approaches for COVID-19.
Country distancing increase reveals the effectiveness of travel restrictions in stopping COVID-19 transmission
Authors: Zhong Lu , Diagne Mamadou , Wang Weiping , Gao Jianxi 
Published: September 2020

Abstract
Non-pharmaceutical interventions are the current central strategy to stop transmitting the novel coronavirus disease (COVID-19) globally. Despite remarkably successful approaches in predicting the ongoing pandemic's spatiotemporal patterns, we lack an intrinsic understanding of the travel restrictions' efficiency and effectiveness. We fill this gap by examining the countries' closeness based on disease spread using country distancing that is analogical to the effective resistance in series and parallel circuits and captures the propagation backbone tree from the outbreak locations globally. Our method estimates that 53.6\% of travel restrictions as of June 1, 2020, are ineffective. Our analytical results unveil that the optimal and coordinated travel restrictions postpone per geographical area by 22.56 [95\% credible interval (CI), 18.57 to 26.59] days of the disease's arrival time and protect the world by reducing 1,872,295 (95\% CI, 216,029 to 23,606,312) infected cases till June 1, 2020, which are significantly better than the existing travel restrictions achieving 12.87 (95\% CI, 10.59 to 15.17) days of arrival time delay and 861,867 (95\% CI, 238,250 to 3,879,638) infected cases reduction. Our approach offers a practical guide that indicates when and where to implement travel restrictions, tailed to the real-time national context.
COVID-19 infection data encode a dynamic reproduction number in response to policy decisions with secondary wave implications
Authors: Rowland Michael A. , Swannack Todd , Mayo Michael L. , Parno Matthew , Farthing Matthew , Dettwiller Ian , George Glover , England William , Reif Molly , Cegan Jeffrey , Trump Benjamin , Linkov Igor , Lafferty Brandon , Bridges Todd 
Published: September 2020

Abstract
The SARS-CoV-2 virus is responsible for the novel coronavirus disease 2019 (COVID-19), which continues to spread to populations throughout the continental United States. Most state and local governments have adopted some level of “social distancing” policy, but infections have continued to spread despite these efforts. Absent a vaccine, authorities have few other tools by which to mitigate further spread of the virus. This begs the question of how effective social policy really is at reducing new infections that, left alone, would likely overwhelm the existing hospitalization capacity of many states. We developed a mathematical model that captures correlations between state-level “social distancing” policies and infection kinetics for all U.S. states, and use it to illustrate the link between social policy decisions, disease dynamics, and an effective reproduction number that changes over time, for case studies of Massachusetts, New Jersey, and Washington states. In general, our findings indicate that the potential for second waves of infection, which result after reopening states without an increase to immunity, can be mitigated by a return of social distancing policies as soon as possible after the waves are detected.