Datasets:

Languages:
English
ArXiv:
License:
gabrielaltay commited on
Commit
c0b9958
1 Parent(s): 4c91f67

upload hub_repos/tmvar_v3/README.md to hub from bigbio repo

Browse files
Files changed (1) hide show
  1. README.md +46 -0
README.md ADDED
@@ -0,0 +1,46 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+
2
+ ---
3
+ language:
4
+ - en
5
+ license: unknown
6
+ license_bigbio_shortname: UNKNOWN
7
+ pretty_name: tmVar v3
8
+ ---
9
+
10
+
11
+ # Dataset Card for tmVar v3
12
+
13
+ ## Dataset Description
14
+
15
+ - **Homepage:** https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/tmvar/
16
+ - **Pubmed:** True
17
+ - **Public:** True
18
+ - **Tasks:** Named Entity Recognition, Named Entity Disambiguation
19
+
20
+
21
+ This dataset contains 500 PubMed articles manually annotated with mutation mentions of various kinds and dbsnp normalizations for each of them. In addition, it contains variant normalization options such as allele-specific identifiers from the ClinGen Allele Registry It can be used for NER tasks and NED tasks, This dataset does NOT have splits.
22
+
23
+
24
+
25
+ ## Citation Information
26
+
27
+ ```
28
+ @misc{https://doi.org/10.48550/arxiv.2204.03637,
29
+ title = {tmVar 3.0: an improved variant concept recognition and normalization tool},
30
+ author = {
31
+ Wei, Chih-Hsuan and Allot, Alexis and Riehle, Kevin and Milosavljevic,
32
+ Aleksandar and Lu, Zhiyong
33
+ },
34
+ year = 2022,
35
+ publisher = {arXiv},
36
+ doi = {10.48550/ARXIV.2204.03637},
37
+ url = {https://arxiv.org/abs/2204.03637},
38
+ copyright = {Creative Commons Attribution 4.0 International},
39
+ keywords = {
40
+ Computation and Language (cs.CL), FOS: Computer and information sciences,
41
+ FOS: Computer and information sciences
42
+ }
43
+ }
44
+
45
+
46
+ ```