# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Collection of brain xray images for fine-grain classification.""" import datasets import numpy as np import pandas as pd from pathlib import Path import os _CITATION = """\ @misc{kaggle-brain-tumor-classification, title={Kaggle: Brain Tumor Classification (MRI)}, howpublished={\\url{https://www.kaggle.com/datasets/sartajbhuvaji/brain-tumor-classification-mri?resource=download}}, note = {Accessed: 2022-06-30}, } """ _DESCRIPTION = """\ This dataset is intended as a test case for classification tasks (4 different kinds of brain xrays). The dataset consists of almost 1400 JPEG images grouped into two splits - training and validation. Each split contains 4 categories labeled as n0~n3, each corresponding to a cancer result of the mrt. | Label | Xray Category | Train Images | Validation Images | | ----- | --------------------- | ------------ | ----------------- | | n0 | glioma_tumor | 826 | 100 | | n1 | meningioma_tumor | 822 | 115 | | n2 | pituitary_tumor | 827 | 74 | | n3 | no_tumor | 395 | 105 | """ _HOMEPAGE = "https://www.kaggle.com/datasets/sartajbhuvaji/brain-tumor-classification-mri?resource=download" _LICENSE = "cc0-1.0" _URLS = { "original": "https://ibm.ent.box.com/index.php?rm=box_download_shared_file&shared_name=5ich3fqgpnbmkdho2eoe7fe4uwrplcfi&file_id=f_978363130854" } LABELS = [ "Glioma Tumor", "Meningioma Tumor", "Pituitary Tumor", "No Tumor" ] class BrainTumorCollectionGenerator(datasets.GeneratorBasedBuilder): """Collection of brain xray images for fine-grain classification.""" VERSION = datasets.Version("1.0.0") BUILDER_CONFIGS = [ datasets.BuilderConfig(name="original", version=VERSION, description="Original JPEG files: images are 400x300 px or larger; ~550 MB"), ] DEFAULT_CONFIG_NAME = "original" def _info(self): features = datasets.Features( { "image": datasets.Image(), "label": datasets.ClassLabel(names=LABELS) } ) supervised_keys = ("image", "label") return datasets.DatasetInfo( description=_DESCRIPTION, features=features, supervised_keys=supervised_keys, homepage=_HOMEPAGE, license=_LICENSE, citation=_CITATION, ) def _split_generators(self, dl_manager): url = _URLS[self.config.name] data_dir = dl_manager.download_and_extract(url) print("Test"+data_dir) return [ datasets.SplitGenerator( name=datasets.Split.TRAIN, gen_kwargs={ "filepath": os.path.join(data_dir, "xrays", "training", "training"), "split": "train", }, ), datasets.SplitGenerator( name=datasets.Split.TEST, gen_kwargs={ "filepath": os.path.join(data_dir, "xrays", "validation", "validation"), "split": "test", }, ), ] def _generate_examples(self, filepath, split): paths = list(Path(filepath).glob("**/*.jpg")) data = [] for path in paths: tumor_folder = str(path).split("/")[-2] index = int(tumor_folder[1]) label = LABELS[index] data.append({"file": str(path), "label": label}) df = pd.DataFrame(data) print(df) df.sort_values("file", inplace=True) for idx_, row in df.iterrows(): yield idx_, { "image": row["file"], "label": row["label"] }