Patent SG-11201907418Y-A (SG)
Title: Method and apparatus for the compact representation of bioinformatics data using multiple genomic descriptors
Inventor: ALBERTI CLAUDIO
IPC: G06F7/00
Filed: 2018-02-14
Abstract: W O 20 18/ 15 2143 Al 2110 Figure 21 „ L , \"E axterna7' .4 L2-- 217 2C c 17; Transformed reference \ 2113 2114 219 2111 Layer 1 decoder Entropy decoder Reference ransformatio descriptors 2112 Layer N decoder 214 Class P decoder Class N decoder Class M decoder Class I decoder Class U decoder Class HIV decoder Metada to decoder (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date 23 August 2018 (23.08.2018) WIPO I PCT ~~ll~~~~~~~~ 011101VIIIVIIIVIII olo HE 010VIII01111111 ow (10) International Publication Number WO 2018/152143 Al (51) (21) (22) (25) (26) (30) (71) (72) (71) (72) International Patent Classification: GOOF 7/00 (2006.01) International Application Number: PCT/US2018/018092 International Filing Date: 14 February 2018 (14.02.2018) Filing Language: English Publication Language: English Priority Data: PCT/US2017/017842 14 February 2017 (14.02.2017) US PCT/US2017/041591 11 July 2017 (11.07.2017) US Applicant: GENOMSYS SA [CH/CH]; Chemin De La Raye 13, CH-1024 Ecublens (CH). Inventor; and Applicant: BALUCH, Mohamed, Khoso [US/US]; 4439 Woodsedge Ct, Chantilly, VA 20151 (US). Inventors: ALBERTI, Claudio; Chemin Des Esserts 1, CH-1213 Petit-Lancy (CH). ZOIA, Giorgio; Chemin Des Croix-rouges 10, CH-1007 Lausanne (CH). RENZI, Daniele; Route Aloys-Fauquez 105, CH-1018 Lausanne (CH). (74) Agent: ETTEHADIEH, Aslan; Aslan Law, P.C., 7804 Holmes Run Drive, Falls Church, VA 22042 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). (54) Title: METHOD AND APPARATUS FOR THE COMPACT REPRESENTATION OF BIOINFORMATICS DATA USING MULTIPLE GENOMIC DESCRIPTORS (57) : Method and apparatus for the compression of genome sequence data produced by genome sequencing machines. Sequence reads are coded by aligning them with respect to pre-existing or con- structed reference sequences, the coding process is composed of a clas- sification of the reads into data classes followed by the coding of each class in terms of a multiplicity of descriptors blocks. Specific source models and entropy coders are used for each data class in which the data is partitioned, and each associated descriptor block. [Continued on next page] WO 2018/152143 Al MIDEDIMOMMIDIREEMOMOMMOMEMOVOIMIE Published: — with international search report (Art. 21(3))