Patent SG-11201811025V-A (SG)
Title: Systems and methods for automated annotation and screening of biological sequences
Inventor: DIGGANS JAMES
IPC: G06F17/50
Filed: 2017-06-09
Abstract: INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property 11111110111101110101011111010111110 0101110101111110011111111111111# 1111 Organization International Bureau (10) International Publication Number 0 (43) International Publication Date .....0\"\" WO 2017/214574 Al 14 December 2017 (14.12.2017) W I PO I PC T (51) International Patent GO6F 17/50 (2006.01) GO6F 19/22 (2011.01) (21) International Application (22) International Filing Date: (25) Filing Language: (26) Publication Language: (30) Priority Data: 62/348,786 10 62/375,858 16 (71) Applicant: TWIST [US/US]; 455 Mission Francisco, California 94158 Classification: (72) Inventor: DIGGANS, James; 1324 Cordilleras Avenue, G06F 19/28 (2011.01) San Carlos, California 94070 (US). C12N 15/10 (2006.01) (74) Agent: HARBURGER, David; WILSON SONSINI Number: GOODRICH & ROSATI, 650 Page Mill Road, Palo Alto, PCT/US2017/036868 California 94304 (US). (81) Designated States (unless otherwise indicated, for every 09 June 2017 (09.06.2017) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, English CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, English DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, June 2016 (10.06.2016) US KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, August 2016 (16.08.2016) US MG, MK, MN, MW, MX, MY, MZ, NA, NG, NE NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, BIOSCIENCE CORPORATION SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, Bay Boulevard South, Suite 545, San TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (US). METHODS FOR AUTOMATED ANNOTATION AND SCREENING OF BIOLOGICAL SEQUENCES knowledge and participa- science on the link to broaden both interest empowered to evaluate the described herein provide biological sequences from (54) Title: SYSTEMS AND Query File Protein database multiple or In Blast Report Restricted lists Restricted lists disclosure describes software tools for effective biosecurity herein provide assistance and negative outcomes. Screening so that practitioners and biological sequence than waiting until synthesis or even expression. across the same or based on community community to track emerging enables the community construct providers are addition, screening tools associated with harmful Screen report FIG. 3A to the synthetic biology tools described herein orders for sequences ,-, 7 r (57) : The present IN in tion. Annotation tools described 71. between individual proteins N and effective practice of biosecurity ---, safety of order requests rather I N for screening of polynucleotides 1-1 C a reference database. ei C [Continued on next page] WO 2017/214574 Al MIDEDIMOMOIDEIRMEM0011010HEINEHMEMOIMIE (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). Declarations under Rule 4.17: — as to applicant's entitlement to apply for and be granted a patent (Rule 4.17(ii)) — as to the applicant's entitlement to claim the priority of the earlier application (Rule 4.17(iii)) Published: — with international search report (Art. 21(3))