Patent SG-11201903269Q-A (SG)
Title: Method and apparatus for the access to bioinformatics data structured in access units
Inventor: ALBERTI CLAUDIO
IPC: H03M7/30
Filed: 2017-07-11
Abstract: PUBLISHEDUNDER THE PATENT COOPERATION TREATY (PCT) () INTERNATIONAL APPLICATION (19) World Intellectual Property Organization International Bureau (43) International Publication Date Iiiimmomiolollmonoloolomoionitiomovoimill (10) International Publication Number WO 2018/071078 Al 0 CC mode %anomie Region Aft Cies 1 M F.11 ,M AURJA 1 t•Uk). AUS.„1 19 April 2018 (19.04.2018) WIPO I PCT (51) International Patent Classification: 11 October 2016 (11.10.2016) EP GO6F 19/18 (2011.01) GO6F 21/12 (2013.01) PCT/EP2016/74301 GOOF 19/20 (2011.01) HO3M 7/30 (2006.01) 11 October 2016 (11.10.2016) EP GOOF 19/22 (2011.01) PCT/EP2017/017842 (21) International Application Number: 14 February 2017 (14.02.2017) PCT/EP2017/017841 US PCT/US2017/041579 14 February 2017 (14.02.2017) US (22) International Filing Date: (71) Applicant: GENOMSYS SA; Chemin De La Raye 13, 11 July 2017 (11.07.2017) 1024 Ecublens Vd (CH). (25) Filing Language: English (72) Inventor; and (26) Publication Language: English (71) Applicant: BALUCH, Mohamed, Khoso [US/US]; 4439 Woodsedge Ct, Chantilly, VA 20151 (US). (30) Priority Data: PCT/EP2016/074307 (72) Inventors: ALBERTI, Claudio; Chemin Des Esserts 1, 11 October 2016 (11.10.2016) EP PCT/EP2016/074297 11 October 2016 (11.10.2016) EP PCT/EP2016/074311 1213 Petit-lancy (CH). ZOIA, Giorgio; Chemin Des Croix- rouges 10, 1007 Lausanne (CH). RENZI, Daniele; Route Aloys-fauquez 105, 1018 Lausanne (CH). (54) Title: METHOD AND APPARATUS FOR THE ACCESS TO BIOINFORMATICS DATA STRUCTURED IN ACCESS UNITS GRC mode AUO_CI AtiiO Region 1 Figure 17 (57) : Method and apparatus for the coding and selective access of compressed genomic sequence data produced by genomic sequencing machines. The coding process is based on aligning sequence reads with respect to pre-existing or constructed reference sequences, on classifying and coding the sequence reads by means of sets of descriptors, and further partitioning the descriptor sets into access units of different types. Efficient selective access to specific genomic regions with the guarantee of retrieving all sequence reads mapped to those regions, is provided by: signaling the type of data mapping configuration used to store or transmit the descriptor sets, determining the minimum number of access units that need to be retrieved and decoded to access a genomic region, providing a master index table that contain all information for optimizing the data access process. [Continued on next page] GC N O N O GC O O WO 2018/071078 Al MIDEDIMOMOIDEIREEMONOMOIONMEMOVOIS (74) Agent: BILICKI, Byron et al.; The Bilicki Law Finn, P.C., 1285 North Main Street, Jamestown, NY 14701 (US). (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). Declarations under Rule 4.17: — as to the identity of the inventor (Rule 4.17(0) Published: — with international search report (Art. 21(3))