Patent SG-11201808219P-A (SG)
Title: Genomic, metabolomic, and microbiomic search engine
Inventor: LAVRENKO VICTOR
IPC: G16B50/50
Filed: 2017-03-21
Abstract: INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication 28 September 2017 (28.09.2017) 111111 1111111111111111111111111111111111111 Publication Number 2017/165444 A9 CORRECTED VERSION ,11,,,„,,,,,, ,,,„,1111111111111111111111111111 --, (10) International Date .......\"' WO WI PO I PCT (25) Filing Language: (26) (30) (71) Applicant: HUMAN LONGEVITY, INC. [US/US]; 4570 (51) International (21) International (22) International Patent Classification: (72) Inventors: LAVRENKO, Victor; 1759/B Springer Road, GO6F 19/24 (2011.01) GO6F 19/28 (2011.01) Mountain View, California 94040 (US). TELENTI, Amalio; 1642 Kearsarge Road, La Jolla, California 92037 Application Number: (US). OCH, Franz Josef; 1640 Hollingworth Drive, Moun- PCT/US2017/023449 tain View, California 94040 (US). Filing Date: (74) Agent: NOVAK, Jason, J.; McDermott Will & Emery 21 March 2017 (21.03.2017) LLP, 275 Middlefield Road, Suite 100, Menlo Park, CA English 94025 (US). Publication Language: English (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, Priority Data: AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, 62/311,333 21 March 2016 (21.03.2016) US CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, 62/311,337 21 March 2016 (21.03.2016) US DZ, EC, EE, EG, ES, FL GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KH, KN, KP, KR, Executive Drive, San Diego, California 92121 (US). KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, GENOMIC, METABOLOMIC, AND MICROBIOMIC SEARCH ENGINE 702 s kid 704 Disclosed are systems, recorded in the computer storage, the indices comprising tokenized genomic data; a software module providing an indexing the indexing pipeline ingesting gene names and gene variant names, and updating the indices with the tokenized data; and a software module presenting a allowing a user to enter a user query; a software module providing a query engine, the query engine accepting the user selecting one or more relevant indices, and applying a ranking formula to the selected indices to return ranked results. Fig. 7 (54) Title: -amoryi --g , c ad pathogenici , c kyli;,, t ,wi w% r. 1 , ing .iy?\";reM\"` media, and methods for providing a genomic search engine application comprising: a plurality genomic data and annotation associated with the genomic data, tokenizing the data while (:: 7 1. (57) : ll• of indices, 7 r pipeline, in preserving Il user interface -- j r:--- query, 1-1 0 ei o [Continued on next page] WO 2017/165444 A9 IMEDIMOM0101011MOIDEMOMMEMINIMMEMO# MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG). Declarations under Rule 4.17: — as to applicant's entitlement to apply for and be granted a patent (Rule 4.17(H)) — as to the applicant's entitlement to claim the priority of the earlier application (Rule 4.17(iii)) Published: — with international search report (Art. 21(3)) (48) Date of publication of this corrected version: 20 September 2018 (20.09.2018) (15) Information about Correction: see Notice of 20 September 2018 (20.09.2018)