interstitial deletion of chromosome 3 is rare . to our knowledge , there are only 11 cases of 3p deletion reported in english literature .
we report a girl with interstitial deletion of the short arm of chromosome 3 ( 46 , xx , del 3 ( p13 p21 ) ) with features of joubert 's syndrome ( js ) .
js is a rare brain malformation characterized by the absence or underdevelopment of the cerebellar vermis- an area of the brain that controls balance and coordination .
this saudi female baby born to g4 p3 mother at 38 weeks gestation by emergency caesarian section due to fetal bradycardia .
parents were non - consanguineous saudi couple and the mother is 34-year - old and father 40-year - old .
family history was unremarkable . during antenatal period , there was no history of medication intake or exposure to radiation .
birth weight was 1980 g ( 10 centile ) ; length : 43 cm ( 10 centile ) ; head circumference : 31.5 cm ( 10 centile ) .
after birth , severe respiratory distress was encountered , which required intubation and mechanical ventilation .
bilateral choanal atresia diagnosed and surgical repair of choanal atresia was performed at 1 week .
poor and uncoordinated sucking was noticed , which necessitated tube feeding initially , and later on gastrostomy tube feeding .
the subject had a broad fore head , low frontal hair line , hypertelorism , a short broad based nose with anteverted nares , bilateral microopththalmia , a short philtram , high and vaulted palate , small low set ears with hypoplasia of the upper part of helix .
finger positioning showed camptodactyly of the second finger with the third and fourth finger overlapping the index finger .
hands were positioned in an ulnar deviation and transverse crease was found in the palms .
the magnetic resonance imaging showed molar tooth sign , absence of vermis with partial agenesis of corpus collosum , figure 3a and b. analysis of g - banded chromosomes showed an interstitial deletion of p13 to p21 in the proximal short arm of chromosome 3 , figures 4 and 5 .
patient died at the age of 5 and 1/2 months due to escherichia coli sepsis .
facial features of the patient with 3p deletionsupine position features of the patientlateral view molar tooth sign in magnetic resonance imaging , absence of vermis with partial agenesis of corpus collosum magnetic resonance imaging showing the molar tooth sign an interstitial deletion of p13 to p21 in the proximal short arm of chromosome 3
to our knowledge , total of 11 cases of the proximal interstitial deletion of the short arm of chromosome 3 have been published , deletion of the short arm of chromosome 3 in association with js was not reported .
js is an autosomal - recessive disorder , characterized by hypotonia , ataxia , global developmental delay and molar tooth sign on magnetic resonance imaging . a variety of other abnormalities described in children with js , including abnormal breathing , abnormal eye movements , a characteristic facial appearance , delayed language , hypersensitivity to noise , autism , ocular and oculomotor abnormalities , meningoencephaloceles , microcephaly , low - set ears , polydactyly , retinal dysplasia , kidney abnormalities ( renal cysts ) , soft - tissue tumor of the tongue , liver disease and duodenal atresia .
even within siblings the phenotype may vary , making it difficult to establish clinical diagnostic boundaries of js .
dagmar wieczorek et al . reported a case of interstitial deletion of the short arm of chromosome 3 and charge like phenotype association .
our patient has overlapping chromosomal breaking points and strikingly similar facial appearance ; in addition , our patient had bilateral hydronephrosis , but no coloboma of iris .
neri et al . reported a proximal 3p deletion phenotype including four major manifestations ; the first being a characteristic facial phenotype was characterized by a low fore head , epicanthic folds hypertelorism , broad nasal bridge , short stubby nose with anteverted nares , short philtrum , small mouth , micrognathia , low set and dysplastic ears .
thus , in comparison with proximal 3p deletion , our patient has recognizable facial phenotype . in 3 of the 5 reports with the proximal break points in 3p 13
, the patient of kogame and kudo and wyandt et al . illustrated , but show a different facial phenotype , neri et al .
reported 3 major manifestations of the proximal 3p deletion phenotype are limitations of joint movements , deformities , including ulnar deviation of the hands , comptodactyly and calcaneous feet and delayed psychomotor development .
other reported anomalies such as heart defects and intestinal malformations including agenesis of gall bladder , posteriorly placed anus and meckel 's diverticulum seems to be non - specific .
being also present in other chromosomal rearrangements , they do not defining the proximal interstitial 3p phenotype .
in addition to the clinical manifestations mentioned above , which fit into the spectrum of an interstitial deletion of 3p , our patient had bilateral choanal atresia , congenital heart disease ( patent ductus arteriosus , atreal and ventricular septal defects ) .
she had also growth retardation , bilateral hydronephrosis , low set , dysplastic protruding ears , absence of cerebellar vermis and partial agenesis of corpus collosum , which is consistent with js .
lin et al . reported a case of direct interstitial duplication of chromosome 4 from 4q28.1 to 4q35 associated with bilateral choanal atresia .
the child also had dysmorphic features including a broad nasal bridge , telecanthus , downward slanting palpebral fissures , prominent ears , and mild bilateral clinodactyly of the fifth fingers and bilateral hypoplasia of the second to fifth toenails .
there was also a slightly dilated renal collecting system . at the age of 2.5 years , he had moderate global developmental delay , short , wide , tapering fingers and short toes with hypo plastic toenails .
reported a case of a 22-month - old boy with developmental and psychomotor retardation as well as craniofacial dysmorphism , including a cleft lip .
analysis of g - banded chromosomes of the propositus showed a de novo interstitial deletion of the short arm of chromosome 3 , del ( 3 ) ( p13p11 ) .
hertz reported de novo interstitial deletion of the short arm of chromosome 3 prenatally diagnosed in a male fetus , karyotype 46 , xy , del ( 3 ) ( pter  p14.2::p11qter ) .
the fetus had craniofacial dysmorphisms , a single transverse palmar crease , ulnar deviation in the wrists , cardiovascular anomalies , a slight ureteric dilatation and a mobile caecum .
short et al . reported deletions of 3p usually involve the terminal portion ( 3p25 ) .
an interstitial deletion of a proximal 3p segment ( 3p14 ) was detected at amniocentesis .
the clinical and cytogenetic characteristics of this case and of three previously published cases are reviewed .
reported a girl with delayed growth in body height and weight , retarded psychomotor development , facial dysmorphism , high - arched palate , extension defects of elbows , and a probable hearing impairment is presented . a chromosome investigation by both conventional and high - resolution banding techniques revealed an apparently pure interstitial deletion of the proximal segment of the short arm of chromosome 3 ( 46 , xx , del ( 3 ) ( p11 p14.2 ) de novo ) . the paternal karyotype is 47 , xyy .
the clinical features of the patient are compared with those of two previously reported cases in the literature with an interstitial 3p deletion .
he was found to have an interstitial deletion of band p14 from the proximal short arm of chromosome 3 .
examination of the father 's chromosomes indicates an  inserted para centric inversion  in chromosome 3 as the probable origin of the deletion in the child .
from the above discussion we believe that our patient with the typical phenotype features of 3p ( p13-p21 ) has a unique findings in association the js , which is characterized by the dysgenesis of the cerebellar vermis with the brain stem malformation comprising the molar tooth sign in magnetic resonance imaging .
 we report a case of 4 weeks old girl with a de novo interstitial deletion of the short arm of chromosome 3 ( p13-p21 ) and clinical findings typical of proximal 3p deletion together with heart defects , choanal atresia , ear anomalies , central nervous system anomalies , renal anomalies and associated joubert 's syndrome ( js ) . 
 family history is unremarkable and parenteral chromosomes were normal . 
 the clinical manifestations of the patient are compared with those of 11 patients previously described with a proximal 3p deletion . 
 the additional js features associated with this syndrome were described . 
 this is the first case report in english literature describing 3p deletion associated with additional js features . 