Source:
public static void update(IResourceChangeEvent event) { final Set<GitProjectData> modified = new HashSet<>(); try { event.getDelta().accept(new IResourceDeltaVisitor() { @Override public boolean visit(IResourceDelta delta) throws CoreException { IResource resource = delta.getResource(); int type = resource.getType(); if (type == IResource.ROOT) { return true; } else if (type == IResource.PROJECT) { return (delta.getKind() & (IResourceDelta.ADDED | IResourceDelta.CHANGED)) != 0 && ResourceUtil.isSharedWithGit(resource); } if ((delta.getKind() & (IResourceDelta.ADDED | IResourceDelta.CHANGED)) == 0 || resource.isLinked()) { return false; } IPath location = resource.getLocation(); if (location == null) { return false; } if (!Constants.DOT_GIT.equals(resource.getName())) { return type == IResource.FOLDER; } File gitCandidate = location.toFile().getParentFile(); File git = new FileRepositoryBuilder() .addCeilingDirectory(gitCandidate) .findGitDir(gitCandidate).getGitDir(); if (git == null) { return false; } IProject project = resource.getProject(); if (project == null) { return false; } GitProjectData data = get(project); if (data == null) { return false; } RepositoryMapping m = RepositoryMapping .create(resource.getParent(), git); try { Repository r = Activator.getDefault() .getRepositoryCache().lookupRepository(git); if (m != null && r != null && gitCandidate.equals(r.getWorkTree())) { data.mappings.put(m.getContainerPath(), m); data.map(m); modified.add(data); } } catch (IOException e) { Activator.logError(e.getMessage(), e); } return false; } }); } catch (CoreException e) { Activator.logError(e.getMessage(), e); } finally { for (GitProjectData data : modified) { try { data.store(); } catch (CoreException e) { Activator.logError(e.getMessage(), e); } } } }

Target:
public static void update(IResourceChangeEvent event) { final Set<GitProjectData> modified = new HashSet<>(); try { event.getDelta().accept(new IResourceDeltaVisitor() { @Override public boolean visit(IResourceDelta delta) throws CoreException { IResource resource = delta.getResource(); int type = resource.getType(); if (type == IResource.ROOT) { return true; } else if (type == IResource.PROJECT) { return (delta.getKind() & (IResourceDelta.ADDED | IResourceDelta.CHANGED)) != 0 && ResourceUtil.isSharedWithGit(resource); } if ((delta.getKind() & (IResourceDelta.ADDED | IResourceDelta.CHANGED)) == 0 || resource.isLinked()) { return false; } IPath location = resource.getLocation(); if (location == null) { return false; } if (!Constants.DOT_GIT.equals(resource.getName())) { return type == IResource.FOLDER; } File gitCandidate = location.toFile().getParentFile(); File git = new FileRepositoryBuilder() .addCeilingDirectory(gitCandidate) .findGitDir(gitCandidate).getGitDir(); if (git == null) { return false; } GitProjectData data = get(resource.getProject()); if (data == null) { return false; } RepositoryMapping m = RepositoryMapping .create(resource.getParent(), git); try { Repository r = Activator.getDefault() .getRepositoryCache().lookupRepository(git); if (m != null && r != null && gitCandidate.equals(r.getWorkTree())) { data.mappings.put(m.getContainerPath(), m); data.map(m); modified.add(data); } } catch (IOException e) { Activator.logError(e.getMessage(), e); } return false; } }); } catch (CoreException e) { Activator.logError(e.getMessage(), e); } finally { for (GitProjectData data : modified) { try { data.store(); } catch (CoreException e) { Activator.logError(e.getMessage(), e); } } } }