Abstract:
The invention relates to the construction of recombinant, immunodominant polypeptides against spotted fever group  Rickettsia . The invention also relates to a method for the use of the recombinant proteins, either singly or in combination, in detection and diagnostic assays of spotted fever. The proteins can also be used to induce immune response against spotted fever group  Rickettsia.

Description:
CROSS-REFERENCE OF RELATED APPLICATION 
     This application claims priority to U.S. provisional application No. 61/059,382 filed on Jun. 6, 2008, which is hereby incorporated by reference. 
    
    
     BACKGROUND OF THE INVENTION 
     1. Field of Invention 
     The present invention relates to genes and proteins that can be used in vaccination, detection and identification of spotted fever rickettsiae infection. More particularly, the invention relates to specific nucleotide sequences encoding a highly specific and immunogenic portion of the outer membrane protein A (OmpA) of  Rickettsia rickettsii . The polypeptide sequence can be utilized in diagnostic and detection assays for spotted fever rickettsiae and as an immunogen component in vaccine formulations against spotted fever  Rickettsia.    
     2. Description of the Prior Art 
     Rickettsiae are Gram-negative, obligate intracellular parasites of the genus  Rickettsia . They are responsible for many spotted fever group  Rickettsia  infection, and typhus group infection [1]. Of the spotted fever group, Rocky Mountain spotted fever is the most severe and most frequently reported rickettsial illness in the United States. It also occurs in Mexico and in central and south America. The disease is caused by  Rickettsia rickettsii , a species of bacteria that is transmitted to humans by ixodid (hard) ticks. Rickettsiae target vascular endothelium. Other named species of the spotted fever group and their geographic distributions are listed in table 1. 
     Table 1 of Human Disease around the world caused by spotted fever group Rickettsiae. (http://www.cdc.gov/ncidod/dvrd/rmsf/Epidemiology.html, Apr. 1, 2008). 
     
       
         
               
               
               
             
           
               
                   
               
               
                 Organism 
                 Disease or Presentation 
                 Geographic Location 
               
               
                   
               
             
             
               
                 
                   Rickettsia rickettsii 
                 
                 Rocky Mountain spotted fever 
                 North, Central and South 
               
               
                   
                   
                 America 
               
               
                 
                   Rickettsia conorii 
                 
                 Mediterranean spotted fever, 
                 Europe, Asia, Africa, India, 
               
               
                   
                 boutonneuse fever, Israeli spotted fever, 
                 Israel, Sicily, Russia 
               
               
                   
                 Astrakhan fever, Indian tick typhus 
               
               
                 
                   Rickettsia akari 
                 
                 Rickettsialpox 
                 Worldwide 
               
               
                 
                   Rickettsia sibirica 
                 
                 Siberian tick typhus, North Asian tick 
                 Siberia, People&#39;s Republic of 
               
               
                   
                 typhus 
                 China, Mongolia, Europe 
               
               
                 
                   Rickettsia australis 
                 
                 Queensland tick typhus 
                 Australia 
               
               
                 
                   Rickettsia honei 
                 
                 Flinders Island spotted fever, Thai tick 
                 Australia, South Eastern Asia 
               
               
                   
                 typhus 
               
               
                 
                   Rickettsia africae 
                 
                 African tick-bite fever 
                 Sub Saharan Africa, 
               
               
                   
                   
                 Caribbean 
               
               
                 
                   Rickettsia japonica 
                 
                 Japanese or Oriental spotted fever 
                 Japan 
               
               
                 
                   Rickettsia felis 
                 
                 Cat flea rickettsiosis, flea borne typhus 
                 Worldwide 
               
               
                 
                   Rickettsia slovaca 
                 
                 Necrosis, erythema, lymphoadenopathy 
                 Europe 
               
               
                 
                   Rickettsia 
                 
                 Mild spotted fever 
                 China, Asian Region of 
               
               
                 
                   heilongjaiangensis 
                 
                   
                 Russia 
               
               
                 
                   Rickettsia parkeri 
                 
                 Mild spotted fever 
                 USA 
               
               
                   
               
             
          
         
       
     
     Rocky Mountain spotted fever (RMSF) can be treated easily with antibiotics. If the patient is treated within the first 4-5 days of the disease, fever generally subsides within 24-72 hours. However, it is very difficult to make a clinical diagnosis in the disease&#39;s early stages. The early clinical presentation of Rocky Mountain spotted fever is nonspecific and may resemble a variety of other diseases including influenza, measles, and rubella, as well as other rickettsial diseases [2]. The classic symptoms of RMSF are sudden onset of fever, headache, and muscle pain, followed by development of rash, abdominal pain, joint pain, and diarrhea [2]. However, this combination of symptoms is not always detected when the patient initially presents for care. Without prompt and appropriate treatment, the disease can be fatal. Long-term health problems following acute Rocky Mountain spotted fever infection include partial paralysis of the lower extremities, gangrene requiring amputation of fingers, toes, or arms or legs, hearing loss, loss of bowel or bladder control, movement disorders, and language disorders. These complications are most frequent in persons recovering from severe, life-threatening form of the disease, often following lengthy hospitalizations. Therefore, rapid and accurate diagnosis and treatment at the onset of the disease is desirable. 
     Serologic assays are the most widely available and frequently used methods for confirming cases of Rocky Mountain spotted fever. The indirect immunofluoresence assay (IFA) is generally considered the reference standard in Rocky Mountain spotted fever serology and is the test currently used by Center of Disease Control and most state public health laboratories, but other well validated assays can also be used in diagnosis, including indirect hemagglutination assay (IHA), ELISA, latex agglutination, and dot immunoassays [2]. 
     IFA can be used to detect either IgG or IgM antibodies. Blood samples taken at early (acute) and late (convalescent) stages of the disease are the preferred specimens for evaluation. Most patients demonstrate increased IgM titers by the end of the first week of illness. Diagnostic levels of IgG antibody generally do not appear until 7-10 days after the onset of illness. The value of testing two sequential serum or plasma samples together to show a rising antibody level is very important in confirming acute infection with rickettsial agents because antibody titers may persist in some individuals for years after the original exposure to cross-reactive rickettsial agents. IgG antibodies are more specific and reliable since other bacterial infections can also cause elevations in riskettsial IgM antibody titers. One of the disadvantage in using IFA to diagnose Rocky Mountain spotted fever is that most patients visit their physician relatively early in the course of the illness, before the presences of diagnostic antibody level. In addition, variations in the endpoint titer may occur due to differences in the quality of the microscope, the quality of the anti-immunoglobulin conjugate, and the experience of the technician. 
     Both IHA and latex agglutination rely on a common source of rickettsial antigen, extracted from  R. rickettsii . This antigenic material is coated on sheep or human type O erythrocytes for IHA and onto latex beads for latex agglutination. Although IHA test demonstrates the earliest, steepest rise in antibody titer of all serologic tests for RMSF, it is rarely used as the diagnostic method in acute state of the illness. Only 19% of patients with RMSF had an acute titer of 40, which is much lower value than CDC&#39;s criterion for using a single titer indicating a probable diagnosis (≧128) [2]. The latex agglutination test is technically simple and rapid and requires no elaborate equipment. However, latex agglutination test is inappropriate for serosurveys and is more diagnostically discriminatory for establishing the diagnosis of a recent infection because the detectable antibody has persistent presentation months after the onset of illness [2]. 
     Although routinely used in retrospective confirmatory diagnosis, current serologic methods are not considered appropriate rapid acute diagnostic tests. Very seldom are specific antibodies to  R. rickettsii  detected during the acute stage of illness when empiric treatment must begin. The most rapid and specific diagnostic assays for Rocky Mountain spotted fever rely on molecular methods like PCR, which can detect DNA of 5-10 rickettsial organisms in a sample. While organisms can be detected in whole blood samples obtained at the acute onset of illness in a few hours, rickettsial DNA is most readily detected in fresh skin biopsies like those used in immunostaining procedures. PCR can also be done on the fixed tissues used in immunostaining, but it is less sensitive than with unfixed tissues. PCR methods can be  R. rickettsii -specific but are usually confirmed by DNA sequencing of the amplified gene fragments. Consequently, this procedure is more specific than antibody-based methods which are often only genus or spotted fever group-specific. However, gene amplification requires sophisticated instrumentation and reagents generally not available in most rural medical facilities. In addition, extensive training is required for the end users to achieve accurate and standardized results. 
     Another approach to Rocky Mountain spotted fever diagnostics is immunostaining. This method is used by taking a skin biopsy of the rash from an infected patient prior to therapy or within the first 48 hours after starting the antibiotic therapy. However, because rickettsiae are focally distributed in lesions of Rocky Mountain spotted fever, this test may not always detect an agent. Even in laboratories with expertise in performing this test, the sensitivity is only about 70% on biopsied tissues because of the scarcity of organisms in some samples. 
     Two major outer membrane proteins of spotted fever group Rickettsiae, OmpA and OmpB, have been identified as major immunogenic antigens. Outer membrane protein A (OmpA) has an apparent molecular mass of 190 kDa. Immunization with recombinant rOmpA ( Rickettsia  OmpA) protects guinea pigs against a lethal dose of  R. rickettsii . The rOmpA gene of ( R. Rickettsia ) contains 6747 nucleotides that code for 2249 amino acid protein [5]. Moreover, immunization with recombinant OmpA of  R. conorii  completely protects guinea pigs against challenge with  R. conorii  and partially protects against challenge with  R. rickettsii [ 6]. OmpA of  R. Rickettsii  was also shown to react strongly with sera from patients infected with  R. rickettsii  and other spotted fever group  Rickettsia . Based on these observations, therefore, OmpA is a particularly advantageous target for developing diagnostic reagents against spotted fever group  Rickettsia , especially against  R. Rickettsii , the causative agent of RMSF. 
       FIG. 1  shows that fragment X of Omp A is conserved among various spotted fever group  Rickettsia .  FIG. 2  is a comparison of fragment Y of OmpA from various spotted fever group  Rickettsia.    
     SUMMARY OF INVENTION 
     Accordingly, an object of this invention is recombinant polypeptides encompassing immunologic regions of OmpA of  R. Rickettsii.    
     Another object of the invention is a method for using recombinant polypeptides encompassing immunologic regions of OmpA of  R. Rickettsii  in antibody-based assays for the detection of spotted fever group rickettsiae. 
     Yet another object of the invention is a method for using recombinant polypeptides encompassing immunologic regions of OmpA  R. Rickettsii  in vaccine formulations against spotted fever infections. 
    
    
     
       BRIEF DESCRIPTION OF DRAWINGS 
         FIG. 1  shows alignment of polypeptide sequences of X fragment of the OmpA (“OmpA_X”) from various spotted fever group  Rickettsia , including  R. slovaca  (SEQ ID NO: 13),  R. honei  (SEQ ID NO:14),  R. rickettsii  (SEQ ID NO: 3),  R. peacockii  (SEQ ID NO:16),  R. parkeri  (SEQ ID NO: 17). 
         FIG. 2  shows alignment of polypeptide sequences of the Y fragment of the OmpA (“OmpA_Y”) from various spotted fever group  Rickettsia, R. conorii  (SEQ ID NO:19),  R. slovaca  (SEQ ID NO:20),  R. honei  (SEQ ID NO: 18),  R. rickettsii  (SEQ ID NO:5),  R. parkeri  (SEQ ID NO:21). 
         FIG. 3  Open reading frame of OmpA and location of Fragments X, Y and Z. 
         FIG. 4  Vector maps for (a) pET24a and (b) pET28a. 
         FIG. 5A  Western blot analysis of OmpA, OmpB, and Fragment X with normal serum. 
         FIG. 5B  Western blot analysis of OmpA, OmpB, Fragment X with patient serum. 
         FIG. 6A  Western blot analysis of OmpA, OmpB, and Fragment Y with normal serum. 
         FIG. 6B  Western blot analysis of OmpA, OmpB, and Fragment Y with patient serum. 
         FIG. 7  Western blot analysis of Fragment Z with normal (a) serum, and patient serum (b). 
         FIG. 8  Prototype SFG test assay made with OmpA-X and Y proteins. 
     
    
    
     DETAILED DESCRIPTION OF THE INVENTION 
     Study of spotted fever group  Rickettsia  has led to the identification of OmpA, which is an exceptionally promising candidate as a reagent for use in diagnostic and detection assays, as well as in vaccine formulations. Central to the development and standardization of improved detection and diagnostic immunoassay methods is the development of more effective antigens for use in antibody-based methods. With a molecular weight of 190 kDa, however, OmpA is difficult to express and purify. Therefore, the large OmpA (190 kDa), is divided into five epitope-containing fragments: W (94 kDa), R (47 kDa), X (25 kDa), Y (26 kDa), and Z (70 kDa) ( FIG. 3 ). Each fragment can be found in a region of OmpA that is predicted to be rich in epitopes. An epitope is the region of an antigen to which the variable region of an antibody binds. Most antigens have a large number of epitopes. The purified antigens may then be used to detect antibodies against Rickettsiae caused spotted fever, and diagnose the disease. By invoking an immunogenic reaction, the antigens may also be used as vaccines.  FIG. 3  illustrates the location of these fragments within the OmpA molecule. The amino acid sequence of OmpA is illustrated in SEQ ID No. 1, which is encoded by nucleotide sequence set forth in SEQ ID No. 2. Fragment X has the amino acid sequence of SEQ ID No. 3 and is encoded by nucleotide sequence set forth in SEQ ID. No. 4. Fragment Y has the amino acid sequence of SEQ ID No. 5 and is encoded by nucleotide sequence set forth in SEQ ID 6. Fragment Z is a longer fragment containing both fragment X and Y. Fragment Z&#39;s amino acid sequence is set forth in in SEQ ID 11 and is encoded by nucleotide sequence set forth in SEQ ID. 12. Rapid tests made with purified antigen for  R. rickettsii  may enable timely, accurate diagnosis of Rocky Mountain spotted fever, which can be performed even in locations where laboratory equipment is not available. 
     Construction of recombinant  R. rickettisia  OmpA fragments were carried out by the expression, purification, and refolding of the X, Y and Z fragments (OmpA-X, OmpA-Y and OmpA-Z). The gene coding OmpA-X (from a.a. 1281 to a.a. 1522 of OmpA) was cloned into the expression vector pET24a. The gene encoding OmpA-Y (from amino acids 1700 to 1950 of OmpA) was cloned into the expression vector pET28a. The gene encoding OmpA-Z (from amino acids 1281 to 1950) was cloned into the expression vector pET 24a.  FIG. 4  shows the Vector maps for (a) pET24a and (b) pET28a. BL21(DE3) strain of  Escherichia coli  was transformed with plasmid containing gene segments for OmpA-X, OmpA-Y and Omp-Z. Following induction, the cells were lysed, and OmpA-X, OmpA-Y and Omp-Z was each found in the inclusion body. The solubilized OmpA-X, OmpA-Y and OmpA-Z in 8 M urea was purified by His-tag affinity chromatography. SDS-PAGE demonstrated that greater than 90% purity was achieved in the final elution. The purified protein fragments were refolded by sequential dialysis at 4° C. in progressively lower concentrations of urea. N-terminal protein sequencing was used to confirm the identity of the refolded proteins. Western blot experiments showed that OmpA-X, OmpA-Y and Omp-Z reacted with patient sera, OmpA-Y reacted especially strong, suggesting that these fragments can be used to develop rapid sero-diagnostic assays and may even be a candidate for a vaccine against Rocky Mountain spotted fever. 
     Cloning of OmpA X, Y and Z Genes into Expression Vectors 
     A set of oligonucleotide primers were used to amplify X and Y fragments. 
                                           TABLE 2               Primer sets for OmpA-X, OmpA-Y and           OmpA-Z fragments.                                SEQ ID No. 7   OmAXf   GGT GGT CAT ATG CGA GAT TCT GTT                   TTA GTA CTT TCT               SEQ ID No. 8   OmAXr   GGT GGT CTC GAG TTG AGT TAA TTG               AAC AGC ATC ATT A               SEQ ID No. 9   OmAYf   GGT GGT CAT ATG GTA ACG GCT ACC               AGC TTT GTA G               SEQ ID No. 10   OmAYr   GGT GGT CTC GAG TGA TTG TAC TTT               ATC CAT TCT AGC               SEQ ID No. 7   OmAZf   GGT GGT CAT ATG CGA GAT TGT GTT               TTA GTA CTT TCT               SEQ ID No. 10   OmAZr   GGT GGT CTC GAG TGA TTG TAC TTT               ATC CAT TCT AGC                    
The expression vector pET24a and pET28a were digested with NdeI and XhoI (NEW ENGLAND BIOLABS® Inc, Beverly Mass.). The PCR product for OmpA-X, OmpA-Y and Omp-Z were also digested with NdeI and XhoI. Agarose gel electrophoresis was performed with the samples. The digested vectors and the X and Y inserts were then cut out from the gel and purified using the QIAquick Gel Extraction Kit (QIAGEN™, Valencia Calif.). The vectors and inserts were ligated together with T4DNA ligase (INVITROGEN™, Carlsbad Calif.).  E. coli  TOPO10 was transform with the resulting plasmids, now pET24a-OmpA-X, pET24a-OmpA-Z and pET28a-OmpA-Y for cloning. The transformed cells were spread on agar plates that contained 50 μg/mL kanamycin and incubated overnight at 37° C. The plasmids were then purified using QIAprep Spin Miniprep Kit (QIAGEN™, Valencia Calif.). A sample of the purified DNA was subjected to a double digestion with NdeI and XhoI, and agarose gel electrophoresis was performed to verify that the inserts had been successfully ligated into the vectors. The pET28a-OmpA-Y plasmid encoded OmpA-Y with a histidine tag on both the N- and C-terminuses, and the pET24a-OmpA-X plasmid encoded OmpA-X with a histidine tag on the C-terminus. The pET24a-OmpA-Z plasmid encoded OmpA-Z with a histidine tag on the C-terminus
 
     Expression of OmpA-X, OmpA-Y and OmpA-Z 
     The plasmids containing the insert were used to transform into the expression hosts. The recombinant  E. coli  were spread on agar plates containing 50 μg/mL kanamycin and were incubated at 37° C. overnight. The recombinant  E. coli  expressing the OmpA fragment was then grown in 0.5 L OVERNIGHT EXPRESS™ Instant TB Medium (NOVAGEN®, Gibbstown N.J.) containing 50 μg/mL kanamycin at 37° C. with shaking at room temperature. The medium induced protein expression. Following induction, the cells were harvested by centrifugation. The cell pellets were resuspended in 15 mL BUGBUSTER® Master Mix (NOVAGEN®, Gibbstown N.J.). The lysis reaction was allowed to proceed for 30 minutes with shaking. The cells were also subjected to ultrasonic disruption on a sonicator for further lysing. The cell lysate was then centrifuged at 7400×g for 30 minutes. The supernatant was collected and saved. The pellet was resuspended in 30 mL 1×HisBind buffer (20 mM Tris-Hcl pH 8, 0.5 M NaCl, 10 mM imidazole) and centrifuged for 30 minutes as before. The supernatant was collected and saved. This process was repeated with 30 mL 1×HisBind buffer containing 2M urea, and finally with 15 mL 1×HisBind buffer containing 8M urea. Bradford&#39;s test and sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was used to analyze the fractions and determine the protein concentration of OmpA-X, OmpA-Y and OmpA-Z. 
     Purification of OmpA-X and OmpA-Y 
     Ni-NTA His-bind Resin (NOVAGEN®, Gibbstown N.J.) was used to purify OmpA fragments from the impurities in the sample. Two milliliters of the Ni-NTA His-bind resin suspension were added to make a 1 mL column. The column was equilibrated with 10 mL of 1×HisBind buffer containing 8M urea. Both OmpA-X and OmpA-Y were found in the inclusion body. The solubilized protein in 8M urea was then added to the column. After an incubation period of 30 minutes with shaking, the resin was allowed to settle. The flow-through was collected and saved. The column was washed twice with 10 mL 1×HisBind buffer containing 8 M urea. OmpA fragment was eluted with six 1 mL solutions, each with an increasing concentration of imidazole (20 mM, 50 mM, 100 mM, 200 mM, 400 mM, and 600 mM). Bradford&#39;s test was performed to determine the protein concentration of each fraction, and SDS-PAGE was used to analyze the purity of the samples. 
     Refolding of OmpA-X and OmpA-Y 
     The purified OmpA fragments in 8M urea was refolded by dialysis against progressively lower concentrations of urea (6 M, 4 M, 2 M, 1 M, 0 M, and 0 M) at 4° C. In addition to urea, each buffer contained 20 mM Tris-HCl (pH 8), 0.15 M NaCl, 1 mM dithiothreitol (DTT), and 1 mM ethylenediamine tetraacetic acid (EDTA). The D-Tube™ Dialyzer Maxi MWCO 12-14 kDa (NOVAGEN®, Gibbstown N.J.) was used for dialysis. The tube was hydrated for 30 seconds in 6M urea buffer, and then the protein sample to be refolded was added to the tube. The beaker containing the buffer and the tubes was placed on a stirrer for 1.5 hours. After this period of time, the tubes were transferred to the 4M urea buffer and left on the stirrer for 1.5 hours. This process was repeated for the rest of the buffers. After the second 0M urea buffer, the protein was recovered. Bradford&#39;s test was used to determine the protein concentration of the refolded sample. 
     Alternative Extraction, Purification and Refolding Procedures 
     To obtain OmpA fragments at a higher purity, alternative extraction, purification and refolding protocols may also be used. In this alternative embodiment, the cell pellet was well dispersed in buffer containing 20 mM Tris-HCl (pH 8), 1 mM dithiothreitol (DTT), and 1 mM ethylenediamine tetraacetic acid (EDTA), via up-down suction using a 10-ml pipette. The cells were broken using a Microfluidizer and centrifuged at 11,250×g for 30 min at 4° C. Supernatant was disgarded and 2M urea in buffer containing 20 mM Tris-HCl (pH 8), 1 mM dithiothreitol (DTT), and 1 mM ethylenediamine tetraacetic acid (EDTA) was added to the pellet. The pellets were dispensed well and spin down as described before. These steps were repeated once. The supernatant was disgarded and 6 M urea in buffer containing 20 mM Tris-HCl (pH 8), 1 mM dithiothreitol (DTT), and 1 mM ethylenediamine tetraacetic acid (EDTA) was added. The pellet was well dispersed by up-down suction using a 10-ml pipette. The solution was centrifuged at 11,250×g for 30 min at 4° C. Supernatant is collected for gel filtration purification. 
     Chromatographic purification of OmpA-X and OmpA-Y A were performed using gel filtration HPLC on TSK P3000SW (21.5 mm×30 cm) or TSK P4000SW (21.5 mm×60 cm) with Waters 600E and Phamarcia Recorder and monitor using a running buffer of 6 M urea, 20 mM Tris-HCl, 1 mM DTT, 1 mM EDTA, 0.15 M NaCl (pH8.0). Pre-equilibration of the TSK P3000SW in tandem with 4000SW preparative column by running the elution buffer on the column overnight (about 15 h) at a flow rate of 0.35 ml/min for 21.5 mm×30 cm column bed (about 100 ml) or at 0.65 ml/min for 21.5×60 cm column bed (208 ml). Isocratic elution run and fractionation were conducted on the sample with 6M urea solution loaded into a 5 ml loop at a flow rate of 4 ml/min. Fractionations were collected at the beginning of peak appearance and analyzed by gel electrophoresis for purity check. 
     Ni-NTA purification were then performed using Hisbind buffer containing 20 mM TrisHCl, 0.5 M NaCl, 10 mM imidazole, 8M Urea (pH 8.0). Fractions containing fragments of higher purity were pooled, and dialyzed for 30 minutes against 8M Urea in buffer containing 20 mM Tris-HCl (pH 8), 1 mM dithiothreitol (DTT), and 1 mM ethylenediamine tetraacetic acid (EDTA) and 0.5M NaCl twice at room temperature. The volume ratio of sample to buffer is 0.02 (i.e. 1 ml sample 50 ml buffer). Sample was loaded onto 1 ml of Ni-NTA (NOVAGEN®, Gibbstown N.J.) column equilibrated with 10 ml Hisbind buffer. The sample was allowed the binding to perform for 15 min at RT with rocking. Collected flow-through samples and washed column with 20 ml Hisbind buffer. Proteins were then eluted with 6×1.0 ml of Hisbind buffer containing 25 mM, 50 mM, 100 mM, 200 mM, 500 mM, and 1M imidazole. Major protein appeared in fractions containing 50 to 200 mM imidazole. Check the elution purity in 4-20% SDS gel. 
     Chromatographic purification of OmpA-Z was performed in 6M urea buffer using an Anion-exchange HPLC on a Waters preparative DEAE column (21.5×15 cm, max. binding capacity, approx 700 mg protein) with Waters 2196 HPLC system interfaced with Millenium software. The starting buffer is 6M urea in 20 mM Tris-HCl (pH 8.0). The second buffer is 6 M urea in 0.5 M NaCl in 20 mM Tris-HCl (pH 8.0). The ending buffer is 6 M urea in 2 M NaCl in 20 mM Tris-HCl (pH 8.0). All buffers also contain 1 mM DTT, 1 mM EDTA, 20 M Tris-HCl (pH 7.5, Fisher). Pre-washing and equilibration were performed on DEAE column followed by fractionation at 0.15 min per fraction. Run SDS-4-20% Tris-HCl bio-rad ready gel BIO-RAD® Laboratories, Hercules, Calif.) to check the fractions. Poll the relative pure fractions for Ni-NTA column purification. 
     Ni-NTA column purification was conducted using HISBIND® buffer containing 20 mM TrisHCl, pH 8.0, 0.5 M NaCl, 10 mM imidazole, 8M Urea. Fractions containing fragments of higher purity were pooled and dialyzed for 30 minutes against 8M Urea in buffer containing 20 mM Tris-HCl (pH 8), 1 mM dithiothreitol (DTT), 1 mM ethylenediamine tetraacetic acid (EDTA) and 0.5M NaCl in Tris buffer pH8.0 twice at room temperature. The volume ratio of sample to buffer is 0.02 (i.e. 1 ml sample 50 ml buffer). Dialyzed sample was mixed with 1 ml of Ni-NTA (NOVAGEN®, Gibbstown N.J.) column previously equilibrated with 10 ml Hisbind buffer. The mixture was rocking at room temperature for 15 minutes. The flow-through samples were then collected and washed column with 20 ml Hisbind buffer. Proteins were eluted with 6×1.0 ml of Hisbind buffer containing 25 mM, 50 mM, 100 mM, 200 mM, 400 mM, and 1M imidazole. The majority of OmpA-Z appeared in fractions containing 50 to 200 mM imidazole. 
     The purified OmpA polypeptide fragments (OmpA-X, OmpA-Y and OmpA-Z) were then refolded by dialysis against progressively lower concentrations of urea (4M, 2M, 1 M, and 0 M) at 4° C. in buffer containing 20 mM Tris-HCl (pH 8), 0.15 M NaCl, 1 mM DTT, and 1 mM EDTA (900 ml). The sample was dialyzed against 4 M urea for 30 minutes in buffer containing 20 mM Tris-HCl (pH 8), 1 mM dithiothreitol (DTT), and 1 mM ethylenediamine tetraacetic acid (EDTA) twice in cold room. The volume ratio of sample to buffer is 0.05 (i.e. 1 ml sample 20 ml buffer). After dialysis in 0 M urea buffer, the protein was recovered and analyzed by BioRad protein assay and by SDS gel electrophoresis. 
     Example 1 
     Western Blot Experiment Demonstrating Immunogenic Reactivity of Fragments X, Y and Z 
     In order to ascertain the reactivity of the recombinant Fragments X, Y and Z as immunogenic antigens for Rocky Mountain spotted fever, western blot analysis was performed on Fragments X, Y and Z of OmpA of R.  Rickettisia  using normal sera and sera from patient who are known to be spotted fever positive. The purified and refolded proteins were subjected to SDS-PAGE and then electroblotted onto a nitrocellulose membrane (BIO-RAD® Laboratories, Hercules, Calif.). The entire procedure was carried out at room temperature. The membrane was blocked for non-specific binding by incubating with 10% skim milk in 1×TBS buffer for 1 hour with rocking. The milk was then poured off, and the membrane was washed once with 1×TBST buffer. Patient sera containing the primary antibody was diluted 100-fold in 1×TBST containing 5% milk. The membrane was incubated with the solution for 1 hour with rocking. Next, the membrane was washed three times with 1×TBST for ten minutes each, and the secondary antibody (goat anti-human IgG Horseradish Peroxidase Conjugate, 1:4000 dilution in 1×TBST). After 1 hour, the membrane was washed with 1×TBST. Three milliliters of OPTI-4CN Substrate were added to detect antibodies. After 10 minutes, the membrane was washed with water.  FIG. 5  illustrates the specificity of the recombinant Fragment X by western blot analysis. In  FIG. 5  ( a ), no reactivity was observed against OmpA, OmpB or Fragment X using control sera. However, OmpA and B and Fragment X are identifiable using patient sera (Panel B).  FIG. 6  illustrates the specificity of the recombinant Fragment Y by western blot analysis. In  FIG. 6  ( a ), no reactivity was observed against OmpA, OmpB or Fragment Y using control sera. However, OmpA and B and Fragment Y are clearly identifiable using patient sera (Panel B).  FIG. 7  illustrates the specificity of the recombinant Fragment Z by western blot analysis. 
     Example 2 
     Use of OmpA Fragments X, Y and Z as Diagnostic Reagent 
     Assays using the recombinantly produced proteins include antibody-based assays such as enzyme-linked immunosorbent assays. As an illustration, the following procedure is provided, comprising the following steps:
         1. Recombinant proteins represented by SEQ ID No. 3, 5 or 11 are immobilized, such as in 96-well plates. Alternatively, for increased sensitivity and specificity of the assay, both of the recombinant proteins represented by SEQ ID No. 3, 5 or 11 can be included together or immobilized separately but used in the same assay;   2. Wash off unreacted/unbound antigen. A preferred embodiment of the inventive method is to wash at least 3 times with wash buffer containing 0.1% polysorbate surfactant such as polyoxyethylene (20) sorbitan monolaurate;   3. Block unreacted sites. In a preferred embodiment, blocking of unreacted sites is accomplished with 5% skim milk in wash buffer)×45 minutes and then rinsed three times.   4. React test sera to the bound antigen;   5. Plates are washed three times with wash buffer;   6. After incubating the test sera, the bound antibody-antigen is exposed to a probe. In a preferred embodiment, the probe is enzyme-labeled (e.g. peroxidase) anti-human immunoglobulin;   7. detecting bound probe. Detection of bound probe can be by any number of methods. In a preferred embodiment, detection is by measurement of enzymatic reaction of added substrate.       

     The above specific procedural outline is provided to illustrate the general method of using the fragments for the detection spotted fever group of  Rickettsia  infection, such as a  R. Rickettisii  infection. However, other iterations of the general procedure can be contemplated. Furthermore, a standard curve can be constructed by conducting antibody-base the above ELISA procedures with the recombinant proteins but utilizing a range of concentrations of specific antibody to  R. rickettisii . The extent of measured binding of patient serum antibody is compared to a graphic representation of the binding of the  R. rickettisii -specific antibody concentrations. 
     A prototype test using OmpA-X and OmpA-Y was build and its result is shown in  FIG. 8 . 
     Example 3 
     Prophetic Use of Recombinant  R. Rickettisii  OmpA Fragments X and Y as a Vaccine Component 
     The recombinantly produced polypeptides, because of their immunoreactivity to antibody in patient sera are excellent vaccine candidates. Accordingly, all or a fragment of the  R. rickettisii  proteins: Fragment X, Fragment Y or Fragment Z (SEQ ID No. 3, 5 or 11 respectively), or their respective DNA sequences (SEQ ID No. 4, 6, 12 respectively) incorporated into a suitable expression vector system, can be utilized as vaccine components. The method for induction of  R. rickettisii  immunity contains the following steps:
         a. administering an immunogenic composition in a unit dose range of 50 μg to 2 mg, said immunogenic composition contains the entire or an immunogenic fragment of OmpA fragments X, Y or Z their amino acid sequences are set forth in SEQ ID No. 3, 5 or 11 respectively;   b. administration of boosting dose of said immunogenic composition at least 1 week after priming dose with unit dose range of 50 μg to 2 mg in a buffered aqueous solution, wherein an immune response is elicited.       

     An alternative method of immunizing is to administer DNA sequences encoding Fragments X, Y, or combinations thereof, inserted into a suitable expression system capable of expressing the fragments in vivo. Suitable expression systems can include viral expression vectors as well as a number of available DNA vector systems. 
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