Abstract:
A device for passing a biopolymer molecule includes a nanochannel formed between a surface relief structure, a patterned layer forming sidewalls of the nanochannel and a sealing layer formed over the patterned layer to encapsulate the nanochannel. The surface relief structure includes a three-dimensionally rounded surface that reduces a channel dimension of the nanochannel at a portion of nanochannel and gradually increases the dimension along the nanochannel toward an opening position, which is configured to receive a biopolymer.

Description:
BACKGROUND 
     Technical Field 
     The present invention relates to nanodevices, and more particularly to devices and methods for stretching biopolymers using nanofluidic channels. 
     Description of the Related Art 
     Accurate and inexpensive sensing of biopolymers, especially nucleic acids (DNA, RNA), is important for many scientific and biomedical applications. A high-throughput and robust device to electrically sequence the biopolymers is of great importance. Solid-state bio-sensing techniques, such as artificial nanopores and channels, have been integrated into fluidics for sensing (sequencing) many types of biopolymer molecules, including DNA, RNA, proteins, etc. For precise single molecule sensing of biopolymers, a linearized or fully stretched biopolymer chain conformation is desirable. However, thermodynamically favored conformation of flexible biopolymers, such as a single strain DNA, includes a coiled conformation. One key issue for sensing biopolymers is a large entropic energy barrier for biopolymers (e.g., low entropy for stretched biopolymers and high entropy for coiled ones) to be transported from a large dimension into a smaller dimension. Such a large energy barrier originates from the entropic difference of the flexible polymer. 
     A large energy barrier greatly lowers the translocation rate of the biopolymers, and can cause very long clogging events in nano-scale channels. Such a large entropy change can cause configurational instabilities of the biopolymers and even drive them to randomly coil and decoil inside the nanofluidic channels or pores. All of these and other problems can lead to reduced and clogged events and thus severely affect proper detection of molecules. Moreover, the entropic energy barrier height increases with the biopolymer chain length, making it very undesirable for precise and high-speed sensing of long biopolymers. 
     SUMMARY 
     A device for passing a biopolymer molecule includes a nanochannel formed between a surface relief structure, a patterned layer forming sidewalls of the nanochannel and a sealing layer formed over the patterned layer to encapsulate the nanochannel. The surface relief structure includes a three-dimensionally rounded surface that reduces a channel dimension of the nanochannel at a portion of nanochannel and gradually increases the dimension along the nanochannel toward an opening position, which is configured to receive a biopolymer. 
     Another device for passing a biopolymer molecule includes a substrate, and a surface relief structure formed on the substrate and having at least one three-dimensionally rounded surface providing a gradually changing depth from a position on the surface relief structure along a channel. The surface relief structure forms a first surface of the channel. A patterned layer is formed on the surface relief structure and forms sidewalls of the channel. A sealing layer is formed over the patterned layer to form a second surface of the channel opposite the first surface. 
     A method for fabricating a device for evaluating biopolymer molecules includes patterning a surface relief material on a substrate; annealing the surface relief material to reflow the surface relief material to form a surface relief structure that includes a rounded surface; planarizing a channel dielectric layer formed over the surface relief material; patterning the channel dielectric layer to shape a nanochannel over the surface relief material; and forming a sealing layer over the channel dielectric layer to encapsulate a channel, wherein the channel includes a channel dimension at a portion of nanochannel and gradually increases the dimension along the nanochannel toward an opening position, which is configured to receive a biopolymer. 
     These and other features and advantages will become apparent from the following detailed description of illustrative embodiments thereof, which is to be read in connection with the accompanying drawings. 
    
    
     
       BRIEF DESCRIPTION OF DRAWINGS 
       The disclosure will provide details in the following description of preferred embodiments with reference to the following figures wherein: 
         FIG. 1A  is a cross-sectional view of a fluidic channel device with gradually changing depth for reduction of entropic barrier in accordance with the present principles; 
         FIG. 1B  is a top-view of the channel of  FIG. 1A . 
         FIG. 2  shows the fluidic channel device of  FIG. 1  along with an electric field distribution graph along the channel, an entropy (S) graph of DNA along the channel and graphs of electrostatic energy (U) and Gibbs free energy (G=U−T*S) of DNA in accordance with the present principles; 
         FIG. 3  is a cross-sectional view of a fluidic channel device with gradually changing depth showing controlling of the nano-fluidic channel depth by tuning parameters such as a contact angle of a surface relief on the substrate, radius of the curvature of the reflowed surface relief material, a size of the reflowed material cap, and a height of the reflowed material cap in accordance with the present principles; 
         FIG. 4  shows linear plots and log plots of radius of the curvature R, height h, and a size of the reflowed material cap r as a function of contact angle with given volumes in accordance with the present principles; 
         FIG. 5  shows graphs of channel depth versus x position for controlling nanochannel depths by volume and contact angle (5-90°) for volumes V 1  and V 2 , and contact angles along the x-axis from 0 to 20 μm; and along the x-axis from 0 to 5 μm in accordance with the present principles; 
         FIG. 6A  is a cross-sectional view and a top view of a substrate having a dielectric or surface layer formed thereon to control contact angle in accordance with the present principles; 
         FIG. 6B  is a cross-sectional view and a top view of the device of  FIG. 6A  showing surface relief materials patterned on the surface layer or substrate in accordance with the present principles; 
         FIG. 6C  is a cross-sectional view and a top view of the device of  FIG. 6B  showing an anneal to reflow surface relief materials in accordance with the present principles; 
         FIG. 6D  is a cross-sectional view and a top view of the device of  FIG. 6C  showing a deposition of a thin dielectric coating in accordance with the present principles; 
         FIG. 6E  is a cross-sectional view and a top view of the device of  FIG. 6D  showing a deposition of a thick insulating dielectric material in accordance with the present principles; 
         FIG. 6F  is a cross-sectional view and a top view of the device of  FIG. 6E  showing a chemical mechanical polish (CMP) planarization and reactive ion etch (RIE) to reduce a thickness of insulating channel dielectric layer in accordance with the present principles; 
         FIG. 6G  is a cross-sectional view and a top view of the device of  FIG. 6F  showing patterning of a nano-fluidic channel in accordance with the present principles; 
         FIG. 6H  is a cross-sectional view and a top view of the device of  FIG. 6G  showing sealing of nano-fluidic channels in accordance with the present principles; 
         FIG. 7  is a cross-sectional view and a top view of devices showing local heating of surface relief materials before and after heating in accordance with the present principles; 
         FIG. 8A  is a top view showing different shapes, surface densities and locations of surface relief material structures in accordance with the present principles; 
         FIG. 8B  is a top view showing a transvers bar shape rounded in accordance with the present principles; 
         FIG. 9A  is a cross-sectional view showing integration of electrodes on nanochannels of surface relief materials including single top-bottom electrodes, where the bottom electrode can be the surface relief material in accordance with the present principles; 
         FIG. 9B  is a cross-sectional view showing integration of electrodes on nanochannels of surface relief materials including multiple top-bottom electrodes, where the bottom electrode can be the surface relief material in accordance with the present principles; and 
         FIG. 9C  is a cross-sectional view showing integration of electrodes on nanochannels of surface relief materials including molecular sensing electrodes, where the bottom electrode can be the surface relief material in accordance with the present principles. 
     
    
    
     DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS 
     In accordance with the present principles, a nanodevice includes a nanochannel having a patterned and reflowed surface relief material to form micro- or nano-scale caps. Such caps can be controlled to have gradual changes in thickness, and serve as a scaffold to define a channel bottom surface, hence yielding a gradually changing channel depth. A flexibly tuned and gradually changing channel depth permits minimized entropic barrier for molecules to translocate. Electrodes can be integrated into the channels for controlling the molecular motion or molecular sensing. 
     A method for fabricating nanofluidic channels with gradually changing depth are provided by building such channels on a surface relief material with a tunable curvature. The curvature of the surface relief material can be designed by engineering its volume, shape, and contact angle on an underlying substrate. Using this, the channel depth and hence confinement of biopolymers can be accurately and flexibly optimized. This can minimize the entopic barrier of the biopolymer to enter into a narrowest channel region and yield a higher translocation rate. 
     It is to be understood that the present invention will be described in terms of a given illustrative architecture having a wafer, substrate or other solid-state material; however, other architectures, structures, substrate materials and process features and steps may be varied within the scope of the present invention. 
     It will also be understood that when an element such as a layer, region or substrate is referred to as being “on” or “over” another element, it can be directly on the other element or intervening elements may also be present. In contrast, when an element is referred to as being “directly on” or “directly over” another element, there are no intervening elements present. It will also be understood that when an element is referred to as being “connected” or “coupled” to another element, it can be directly connected or coupled to the other element or intervening elements may be present. In contrast, when an element is referred to as being “directly connected” or “directly coupled” to another element, there are no intervening elements present. 
     A design for an integrated circuit chip or nanodevice may be created in a graphical computer programming language, and stored in a computer storage medium (such as a disk, tape, physical hard drive, or virtual hard drive such as in a storage access network). If the designer does not fabricate chips or the photolithographic masks used to fabricate chips, the designer may transmit the resulting design by physical means (e.g., by providing a copy of the storage medium storing the design) or electronically (e.g., through the Internet) to such entities, directly or indirectly. The stored design is then converted into the appropriate format (e.g., GDSII) for the fabrication of photolithographic masks, which typically include multiple copies of the chip design in question that are to be formed on a wafer. The photolithographic masks are utilized to define areas of the wafer (and/or the layers thereon) to be etched or otherwise processed. 
     Methods as described herein may be used in the fabrication of integrated circuit chips or nanodevices. The resulting integrated circuit chips can be distributed by the fabricator in raw wafer form (that is, as a single wafer that has multiple unpackaged chips), as a bare die, or in a packaged form. In the latter case the chip is mounted in a single chip package (such as a plastic carrier, with leads that are affixed to a motherboard or other higher level carrier) or in a multichip package (such as a ceramic carrier that has either or both surface interconnections or buried interconnections). In any case the chip is then integrated with other chips, discrete circuit elements, and/or other signal processing devices as part of either (a) an intermediate product, such as a motherboard, or (b) an end product. The end product can be any product that includes integrated circuit chips, ranging from toys and other low-end applications to advanced computer products having a display, a keyboard or other input device, and a central processor. 
     Reference in the specification to “one embodiment” or “an embodiment” of the present principles, as well as other variations thereof, means that a particular feature, structure, characteristic, and so forth described in connection with the embodiment is included in at least one embodiment of the present principles. Thus, the appearances of the phrase “in one embodiment” or “in an embodiment”, as well any other variations, appearing in various places throughout the specification are not necessarily all referring to the same embodiment. 
     It is to be appreciated that the use of any of the following “/”, “and/or”, and “at least one of” for example, in the cases of “A/B”, “A and/or B” and “at least one of A and B”, is intended to encompass the selection of the first listed option (A) only, or the selection of the second listed option (B) only, or the selection of both options (A and B). As a further example, in the cases of “A, B, and/or C” and “at least one of A, B, and C”, such phrasing is intended to encompass the selection of the first listed option (A) only, or the selection of the second listed option (B) only, or the selection of the third listed option (C) only, or the selection of the first and the second listed options (A and B) only, or the selection of the first and third listed options (A and C) only, or the selection of the second and third listed options (B and C) only, or the selection of all three options (A and B and C). This may be extended, as readily apparent by one of ordinary skill in this and related arts, for as many items listed. 
     Referring now to the drawings in which like numerals represent the same or similar elements and initially to  FIGS. 1A and 1B , a nanodevice or nanofluidic structure  100  includes a fluidic channel  121  with gradually changing depth for the reduction of entropic barrier in accordance with one illustrative embodiment.  FIG. 1A  shows a cross-sectional view and  FIG. 1B  shows a top view of the nanofluidic structure  100 . The nanofluidic structure  100  includes a substrate material  101  coated with a surface coating layer  102 . The substrate material  101  may include, e.g., an insulator, a semiconductor, conductor or another suitable rigid material. The surface coating layer  102  may include self-assembled monolayer (SAM, e.g., a single layer of organic molecules), dielectric, metal, glass, semiconductor, etc. A surface relief material or cap  110  may be formed in place or shaped by reflow. Surface relief material or structure  110  may be formed in a spherical cap shape or any other shape having a gradual changing profile. Surface relief material  110  may include a glass, a resist, a polymer, such as polycarbonate, polyethylene, poly (methyl methacrylate) (PMMA), a metal (e.g., a solder), etc. 
     An optional dielectric layer  111  may be employed to coat the surface relief cap  110 . The dielectric layer  111  may be employed to control a dimension of the nanofluidic channel  121  and is formed in an insulating material on top of the coated spherical cap  110 . A dielectric material  122  seals the nanofluidic channel  121 . A biopolymer  131 , e.g., a DNA molecule, is illustratively shown to demonstrate operation of the nanofluidic structure  100 . The nanofluidic channel  121  may include a larger feed port  107  and/or exit port  107  in communication with the nanofluidic channel  121 . 
     Referring to  FIG. 2 , the nanofluidic structure  100  with a gradually changing nano-fluidic channel depth for reduction of an entropic barrier is depicted in cross-section. A graph  202  shows electric field distribution along the channel. A graph  204  shows entropy (S) of DNA along the channel. A graph  206  shows electrostatic energy (U) and the Gibbs free energy (G=U−T*S) of DNA, where T represents the thermodynamic temperature in an absolute scale, e.g., Kelvin. In the graph  206 , qV is indicated where q is charge and V is voltage. 
     The spherical cap has a gradually changed height and thus yields a gradually changing channel depth, with the smallest depth at a zenith of the spherical cap. The electrical field reaches a peak value at the shallowest channel depth region (graph  202 ). As a biopolymer enters from a deep channel region and moves into a shallowest region of the channel (at the zenith), it stretches as the channel depth reduces with its entropy value (S) gradually decreasing (graph  204 ). This yields a smooth changing Gibbs free energy (G=U−TS) slope (graph  206 ), where U is the electrostatic energy of the charged biopolymer and T is the temperature. Therefore, the smoothly transitioned channel depth leads to a minimized entropic energy barrier for the biopolymers to transport through the channel, which is important for the translocation and stretching of biopolymers. 
     Referring to  FIG. 3 , in one embodiment, the surface relief material  110  is completely melted to an ideal spherical cap. Nano-fluidic channel depth is controlled by tuning the contact angle of a surface relief on the substrate. R is the radius of the curvature of the reflowed surface relief material, θ is the contact angle, r is the size of the reflowed material cap, h is the height of the reflowed material cap, d 0  is the minimal channel depth, d is the variable channel depth along the x direction, D is the maximum channel depth. In this case, the relationships between the radius of curvature R, the cap height h, the cap size r and the contact angle θ may include the following: (R−h) 2 +r 2 =R 2 , r=R*sin(θ); h 0 =R−R*cos(θ). 
     Assuming the volume of the surface relief material V is conserved, the volume of the spherical cap V can be written as:
 
 V=π/ 6 *h *(3 r   2   +h   2 )=π/3 *h   2 *(3 R−h )=π/3 *R   3 *(2−3*cos(θ)+cos(θ) 3 ) =V   0  
 
     From above, it is clear R can be derived from the initial volume V 0  with the contact angle θ given. Then, h and r can be calculated from R and θ. Assuming the nanochannel is sealed with a flat film ( 122  in  FIG. 1A ), the smallest depth is d 0 , and the channel depth d or d(x) along the x direction can be calculated as d(x)=d 0 +(R−sqrt(R 2 −x 2 )). This geometry is illustrative as other geometries are also contemplated and with the scope of the present principles. 
     Referring to  FIG. 4 , where the surface relief material  110  is completely melted to an ideal spherical cap, the parameters R, r, and h are all calculated at different contact angles. Two samples of initial volumes for the surface relief material  110  were used, V 1 =10 2  μm 3  (e.g., 1*10*10 μm 3  or 10 11  nm 3 ) and V 2 =10 4  μm 3  (e.g., 1*100*100 μm 3  or 10 13  nm 3 ). In fact, the 100 times difference in volume causes a 4.64 (=(V 2 /V 1 ) 1/3 ) times difference in the two sets of curves of R, r, and h. 
     Examples for determining geometrical parameters R, h, and r by volume and contact angle include a first graph  302 , which is a linear plot showing R  304 , h  306 , and r  308  as a function of contact angle (θ) with given volumes (V 1 =1×10 11 , solid lines, and V 2 =1×10 13  nm 3 , dashed lines), and a second graph  310 , which plots of R  312 , h  314 , and r  316  as a function of contact angle (θ) with given volumes (V 1 =1×10 11 , solid lines, and V 2 =1×10 13  nm 3 , dashed lines). r is related to channel depth. 
     Referring to  FIG. 5 , examples for controlling nanochannel depths by volume and contact angle are illustratively shown. A graph  402  shows channel depths with different contact angles (5-90°) for a cap  420  (surface relief material  110 ) with a volume V 1 =1×10 11  nm 3  along the x-axis from 0 to 20 μm (indicated by line  424 ) from a center position of the cap  420 . A graph  404  shows channel depths with different contact angles) (5-90° for the cap  420  with a volume V 1 =1×10 11  nm 3  along x-axis from 0 to 5 μm (indicated by line  426 ). A graph  406  shows channel depths with different contact angles) (5-90° for a cap  422  with a volume V 2 =1×10 13  nm 3  along the x-axis from 0 to 20 μm (indicated by line  424 ) from a center position of the cap  422 . A graph  408  shows channel depths with different contact angles (5-90°) for the cap  422  with a volume V 2 =1×10 13  nm 3  along x-axis from 0 to 5 μm (indicated by line  426 ). 
     A nanochannel depth (d) can be determined assuming two volumes of the surface relief material ( 110 ) for caps  420  and  422  as 10 11  nm 3  (graphs  402 ,  404 ) and 10 13  nm 3  (graphs  406 ,  408 ). The channel depth d increases very smoothly with a small contact angle θ, but increases quite dramatically for large contact angles. An initial volume of the surface relief material ( 110 ) for caps  420 ,  422  also has an impact on the nanochannel depth slope. At a large distance away from the cap center where x=0, for example x=15 μm, the channel depth is larger for a larger cap. This is because the depth is fixed as the maximum channel depth D=h+d 0  for a small cap, and the channel depth increases as a function of x because of a greater r and h for a larger cap. At a small distance away from the cap center where x=0, for example x=2 μm, the channel depth is larger for a small cap. This is because the cap height changes more abruptly over a same distance x. 
     This shows that the cap geometry and the channel depth can flexibly be designed by tuning the contact angle and the surface relief material ( 110 ). In practical embodiments, the channel depth may need to change from &lt;5 nm to 100-500 nm over a distance of 1-100 μm. The contact angle and the volume of the surface relief material can be determined according to the corresponding h and r dimensions. 
     Referring to  FIGS. 6A-6H , a fabrication scheme is illustratively shown to achieve such a channel-on-cap configuration for a nanodevice  100 . An example of fabricating nanochannels on a reflowed surface relief material includes depositing a surface layer to control contact angle, patterning surface relief materials and annealing to reflow surface relief materials. A thin dielectric coating is deposited and a thick insulating dielectric material is formed on top. A chemical mechanical planarization (CMP) and reactive ion etch (RIE) are employed to reduce the thickness of insulating channel dielectric layer. Nano-fluidic channels are patterned, and sealed. Each of  FIGS. 6A-6H  include a cross-section view (CS), a top view (TV), and a set of axes X, Y and Z for each view. 
     Referring to  FIG. 6A , a dielectric layer  102  is deposited on top of a substrate material  101 . The dielectric layer  102  is employed as an insulating coating of a nanochannel bottom surface, and is also employed as a layer to flexibly tune the contact angle of surface relief material. The dielectric layer  102  can be either organic or inorganic, it can be realized by physical deposition, chemical deposition, chemical assembly, etc., and the material of dielectric layer  102  may include, e.g., SiO 2 , Al 2 O 3 , Si 3 N 4 , organic monolayer, etc. The material of substrate  101  can be any material, either organic or inorganic, and it can be, e.g., Si, SiO 2 , Si 3 N 4 , metal, plastic, etc. The dielectric layer (surface layer)  102  controls the surface tension, which in turn determines the contact angle and the shape of reflowed materials. 
     Referring to  FIG. 6B , a surface relief material  110  is patterned by a combination of micro-nano fabrication techniques, which may include lithography, deposition, etching, etc. An initial volume of the surface relief material  110  is determined in this process. The shape of the surface relief material  110  does not have to be square or rectangular. 
     Referring to  FIG. 6C , an annealing process is performed to fully or partially melt the surface relief material  110  to form a cap. The annealing method can be light illumination (e.g., ultraviolet (UV), excimer, visible, infrared (IR), etc.), heat, etc. Preferably, the heating temperature exceeds the melting or glass-transition temperature of the material to fully reflow the material, which makes the material round, preferably in three dimensions. The temperature could also be slightly lower than the melting or glass-transition temperature to only soften the surface relief material. The surface relief material does not have to be round. A localized heat is also possible to partially melt the surface relief pattern. In an alternate embodiment, the surface relief material  110  is formed separately and adhered to the dielectric layer  102 . 
     Referring to  FIG. 6D , the annealed surface relief cap ( 110 ) is optionally coated with another dielectric layer  111 . The coating or dielectric layer material may include, e.g., Al 2 O 3 , SiO 2 , etc. The deposition can be by atomic layer deposition (ALD), plasma enhanced chemical vapor deposition (PECVD), low pressure CVD (LPCVD), evaporation, etc. The coating material or dielectric layer  111  can be used to harden the underlying surface-relief cap ( 110 ), protect the cap ( 110 ) from etching that follows, and act as an etch-stop layer to control channel depth. 
     Referring to  FIG. 6E , an insulating dielectric layer  120  is coated on top of the spherical cap  110  or dielectric layer  111 , if employed. Layer  120  is to be used to form a fluidic channel. The insulating dielectric layer  120  (channel material) may include, e.g., SiO 2 , Si 3 N 4 , etc. 
     Referring to  FIG. 6F , the insulating dielectric layer  120  is planarized by polishing (e.g., CMP) and optionally thinned by etching, e.g., reactive ion etching or wet chemical etching. The minimum dielectric layer height is set to d 0 , which may be, e.g., less than 100 nm and preferably less than 20 nm. 
     Referring to  FIG. 6G , a nano-channel  121  is patterned and aligned on top of the spherical cap ( 110 ) region by a series of micro-nano fabrication techniques, which may include lithography, deposition, etching, etc. The nanochannels  121  may have different widths at different regions, e.g., with the smallest dimensions on top of the center of the spherical cap  110 . The nano-channel  121  may be configured with tapers  107  or other features to assist in loading and translocating biopolymers. 
     Referring to  FIG. 6H , the channels  121  are sealed with a dielectric material  122 . The sealing method may include wafer bonding and/or pitching off small venting holes using a sacrificial channel material. 
     Referring to  FIG. 7 , in another embodiment, the cap may be formed using different heating techniques to result in different shapes. Local heating of surface relief materials is shown during heating ( 610 ) and after heating ( 612 ). A localized heat source  602 , e.g., a laser or focused light, can be employed to locally modify a shape of surface relief materials  110 . This can result in arbitrary and asymmetric channel depth profiles. 
     Referring to  FIG. 8A , in other embodiments, structure geometry, dimension, and patterning density of the surface relief patterns ( 110 ) can be flexibly changed, according to the need for different dimensions and densities for different channel applications. Tuning shapes, surface density, and locations of surface relief material structures may include complex compound surfaces and shapes. Structures other than those depicted in  FIG. 8A  are also contemplated. 
     Referring to  FIG. 8B , in one practical embodiment, surface relief material  110  can be patterned as a very long (e.g., 1-10 μm length) bar along the Y direction (shown under the insulating dielectric layer  120 ). In this way, the melted surface relief material is less spherical but rather cylindrical with a uniform round cap along the Y direction. The nanochannel  121  can be very easily aligned to the surface relief materials  110  (if the top cap is very spherical then the lateral lithography alignment to pattern the nanochannels on top of the cap would be very stringent). 
     Referring to  FIGS. 9A-9C , the nanodevices in accordance with the present principles may be configured in a plurality of ways, e.g., by including electrodes or other structures for driving or controlling biopolymers or other molecules. Integrating electrodes with nanochannels on surface relief materials may include single top-bottom electrodes, where the bottom electrodes can be the surface relief material itself, may be embedded in or on the surface relief material, may include multiple top and bottom electrodes, may include molecular sensing electrodes, etc. 
     Referring to  FIGS. 9A and 9B , the surface relief structures  110  can be integrated with electrodes for better control of biopolymers and/or sensing the biopolymers. The surface relief material itself can be employed as an electrode. This may include coating the surface relief material  110  with a conductive material, placing a conductor in the surface relief material  110 , making the surface relief material  110  from a conductive material, or provide electrical conductors coated with a layer of linker molecules. 
     A top electrode  115  and/or  116  may be deposited and patterned or otherwise adhered to the dielectric layer  122 . A method for controlling a biopolymer  131  passing between the electrode  115  and the surface relief material  110  can be based on electrostatic interaction of the charged biopolymer with applied electrical potential. There can be multiple electrodes  116  ( FIG. 9B ) or a single ( FIG. 9A ) top electrode. In one embodiment, the surfaces of electrodes  115  and  116  can be functioned (lined or coated) with organic molecules or linker molecules which can interact with the biopolymer, for example, to hold the biopolymer, sense the biopolymer or otherwise interact with the biopolymer being stretched or sensed. The linker molecules may include with self-assembled molecules with a functional head-group, such as, e.g., benzamide and/or imidazole. Other linker molecules may be employed as well. 
     Referring to  FIG. 9C , in another embodiment, a sensing circuit  135  may be connected between an electrode  117  and the surface relief material  110  to form an ohmic contact using fluid in the channel  121 . Electrical current signals can be used to detect and even sequence the biopolymer  131  as it moves through the channel  121 . Other configurations are also contemplated. 
     It should be understood that the biopolymers may employ electrophoresis to drive or translocate biopolymers  131 . The motion of dispersed particles, under the influence of a spatially uniform electric field, is employed to move, relative to a fluid disposed in the channel  121 , the biopolymer through the nanochannel  121 . 
     It should also be noted that, in some alternative implementations, the functions noted in the figures may occur out of the order noted in the figures. For example, two steps shown in succession may, in fact, be executed substantially concurrently, or the steps may sometimes be executed in the reverse order, depending upon the functionality involved. 
     Having described preferred embodiments for nanofluidic channels with gradual depth change for reducing entropic barrier of biopolymers (which are intended to be illustrative and not limiting), it is noted that modifications and variations can be made by persons skilled in the art in light of the above teachings. It is therefore to be understood that changes may be made in the particular embodiments disclosed which are within the scope of the invention as outlined by the appended claims. Having thus described aspects of the invention, with the details and particularity required by the patent laws, what is claimed and desired protected by Letters Patent is set forth in the appended claims.