Abstract:
Disclosed are methods of modulating the expression of genes linked to adipocytokine signaling, carbohydrate metabolism, fatty acid metabolism, arachidonic acid metabolism, PPAR signaling, insulin signaling, lipid metabolism, extracellular matrix (ECM)-receptor interaction, or combinations thereof, methods of treating hyperlipidemia, obesity, excessive cholesterol, cardiovascular disease, liver disease, diabetes, or combinations thereof, and methods of stimulating glucose uptake in an animal in need thereof, comprising administering a composition comprising at least one isolated glyceollin to said animal.

Description:
CROSS-REFERENCE TO RELATED APPLICATIONS 
     This application claims the benefit of U.S. Provisional Application No. 61/284,623, filed on Dec. 22, 2009, and of U.S. Provisional Application No. 61/399,224, filed on Jul. 8, 2010, each of which are hereby incorporated by reference in their entirety. 
    
    
     STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT 
     Not applicable. 
     THE NAMES OF THE PARTIES TO A JOINT RESEARCH AGREEMENT 
     Not applicable. 
     INCORPORATION-BY-REFERENCE OF MATERIAL SUBMITTED ON COMPACT DISC 
     Not applicable 
     BACKGROUND 
     1. Field 
     The present invention relates to the use of isoflavonoid phytoalexin compounds, Glyceollins I, II, and III, found in soy plants grown under stressed conditions, as a method of treating and/or preventing conditions such as hyperlipidemia, obesity, excessive cholesterol, cardiovascular diseases, diabetes, liver disease, and combinations thereof. 
     2. Description of Related Art 
     Obesity is reaching epidemic proportions in Western populations and is commonly attributed to the high fat consumption and the sedentary lifestyles of Western populations. It is a significant public health concern, being linked with diseases such as type 2 diabetes and cardiovascular disease. Visceral (central) obesity, in particular, is associated with insulin resistance, hyperglycaemia, hyperinsulinaemia, dyslipidaemia, hypertension, and prothrombotic and proinflammatory states. The term “metabolic syndrome” encompasses these biochemical abnormalities and clinical conditions that may or may not be associated with central obesity. Obesity is a disorder of energy balance and is associated with hyperinsulinemia, insulin resistance, and abnormalities in lipid metabolism. It is one of the most important risk factors in the development of Type II diabetes, cardiovascular disease, atherosclerosis, and certain cancers. 
     Because of the lower frequency of these diseases in Asian countries, attention has turned toward the Asian diet, which consists mostly of soy and soy-based food products. Adipocytes play a central role in lipid homeostasis and the maintenance of energy balance in vertebrate systems. Excess fat consumption can stimulate enlargement of existing adipocytes and induce differentiation of dormant preadipocytes into mature adipocytes. Hormones, including estradiol, are regulators of this process called adipogenesis. Soy isoflavones (also called phytoalexins) mimic certain estradiol effects by binding to estrogen receptors (ER) and thus altering adipogenesis. Adipogenesis is regulated by the peroxisome proliferator-activated receptor (PPAR-PPARα, PPARβ/δ, and PPARγ) families, the primary adipogenic transcription factors. Increasing evidence has established that soy isoflavones not only act through estrogen receptors but also exert effects through other pathways such as those regulated by PPARs. 
     Several researchers have shown that the isoflavone genistein (an ER agonist) can bind directly to and activate both PPARα and PPARγ. In the liver, activation of PPARα leads to increased β-oxidation of fatty acids, decreased triglyceride (TG), and very low density lipoprotein (VLDL) synthesis. It is generally accepted that the majority of the effects of the soy isoflavone genistein are mediated by changes in the expression of genes involved in cholesterol metabolism. Genistein exerts antidiabetic and hypolipidimic effects through upregulation of PPAR-regulated genes. However, little is known about the effect of genistein and other phytoalexins or phytoalexin isoflavone metabolites on fatty acid synthesis or other aspects of lipid metabolism. 
     The liver X receptors (LXRα and LXRβ) are additional members of the nuclear receptor superfamily that were originally identified as orphan receptors. These two receptors play a key role in the regulation of cholesterol metabolism and transport as well as glucose metabolism and inflammation. The liver X receptors (LXRs) are nuclear receptors that play central roles in the transcriptional control of lipid metabolism. LXRs function as nuclear cholesterol sensors that are activated in response to elevated intracellular cholesterol levels in multiple cell types. Once activated, LXRs induce the expression of an array of genes involved in cholesterol absorption, efflux, transport, and excretion. In addition to their function in lipid metabolism, LXRs have also been found to modulate immune and inflammatory responses in macrophages. The modulation of the activity of LXR receptors may be useful in the treatment of a number of pathophysiological states including dyslipidemia, atherosclerosis, and diabetes. 
     Synthetic LXR agonists promote cholesterol efflux and inhibit inflammation in vivo and inhibit the development of atherosclerosis in animal models. The ability of LXRs to integrate metabolic and inflammatory signaling makes them particularly attractive targets for intervention in human metabolic disease. There is still considerable debate whether selective activation of LXRα or LXRβ has a differential effect on cholesterol homeostasis or whether they exist as functionally redundant paralogs (X,Y). Studies using LXRα/β null mice suggest that the regulation of genes in liver and peripheral tissue involved in cholesterol homeostasis is primarily under the control of LXRα, and activation of LXRβ can partially rescue LXRα null animals from gross peripheral cholesterol accumulation. However, outside of its role in cholesterol efflux, the broader biological functions of LXRβ are emerging, yet remain unclear. Unlike ABCG1 mRNA expression, which seems to be exclusively under the transcriptional control of LXRα, ABCA1 mRNA in a number of cell types is regulated through signaling mechanisms independent of both LXR isotypes and its role in cholesterol transport. Despite this, measuring ABCA1 mRNA changes is often used as a surrogate marker for in vitro and in vivo LXR activation. 
     The liver is an important organ in the metabolism of lipids, carbohydrates, and proteins. Therefore, it is an attractive target organ in the study of obesity. Other tissues can also be analyzed for gene expression including mammary tissue. In primate animal model gene expression of mammary tissue was performed from oral treatments of soy protein isolate (combined with estradiol) with glyceollin-enriched soy protein isolate (combined with estradiol). Little is known about the alteration of genes in animal systems through the oral application of the glyceollins. 
     Of potential interest among the diet-derived compounds are the isoflavones, including genistein and daidzein that are rich in soy products. The isoflavones are also known as phytoalexins. Phytoalexins constitute a chemically heterogeneous group of low molecular weight antimicrobial compounds that are synthesized de novo and accumulate in plants in response to stress. Soy contains several phytoalexins including the constitutive isoflavones daidzein and genistein that are considered as candidates for diet-derived obesity preventive compounds. Initial interest in these compounds arose from studies that correlate consumption of soy products in Asian countries with a decreased incidence of obesity. Hence, a possible use for these compounds in obesity prevention has been suggested. 
     Dietary factors have been increasingly implicated in the etiology of a variety of chronic diseases. Much recent interest has focused on the role of specific bioactive components, particularly from dietary plants, in prevention or treatment of these diseases. Isoflavonoids are an important class of bioactive phytochemicals widely consumed as part of soy-based foods. Soy protein is rich in the glycosylated forms of the isoflavones genistein and daidzein, which have structural similarities to endogenous estrogens and exhibit a variety of biological functions relevant to human health. Recent evidence indicates that isoflavone metabolites may also mediate certain health-related effects of soy foods. The best-studied example is equol, which is formed from daidzein by gut bacteria in a subset of human soy consumers and various non-human species. Under the influence of stressors such as trauma or infection, daidzein may also be metabolized within soybeans to a unique class of defensive compounds called glyceollins. Prior studies have shown that glyceollins exhibit distinct effects compared with genistein and daidzein, including modulation of estrogen receptor (ER) signaling. Effects of glyceollins on other biological pathways and systems have not been investigated, however. The inventors evaluated the short-term effects of glyceollin-enriched soy protein on gene expression profiles in mammary adipose tissue. The inventors identified candidate target pathways of glyceollins and evaluated comparative effects of glyceollin-enriched soy protein with a standard soy protein isolate. 
     Diet is a major determinant of metabolic syndrome and related comorbid conditions, and prior findings suggest that glyceollins may competitively bind estrogen receptors (ERs) and elicit selective ER-modulating properties distinct from soy isoflavonoids. The role of specific isoflavonoids and their derivatives in modulating metabolic pathways remains poorly understood. 
     Gene expression DNA microarrays have provided medical researchers with a powerful tool to study the mechanisms of complex diseases such as obesity. This technology permits a more comprehensive understanding of multiple genes involved in the mechanisms behind both physiologic and pathologic conditions. Microarrays facilitate the classification of disease states according to the changes in the mRNA expressed in different cells or tissues. Gene expression profiling is the major application of DNA microarrays in the research of obesity in both animals and humans. Subcutaneous fat, visceral fat, adipocyte and preadipocyte, muscle, liver, pancreas, and cancer cells under normal and disease conditions are used in addressing the profile of gene expression in obesity. 
     Other research has revealed that some phytoalexins, including resveratrol, delay several diseases of ageing including cancer, atherosclerosis, Type II diabetes and even neurodegeneration. Considering the beneficial health effects of the phytoalexin resveratrol, it is reasonable to propose that other plant phytoalexins have similar beneficial activities. Most current food research based on legumes has focused on plant compounds that are constitutive; however plant food items may also contain thousands of phytoalexin compounds not present in current foods. In the legume family alone there are over two hundred phytoalexins with possible underutilized preventive benefits related to obesity. These compounds have the potential to create novel phytoalexin-enriched foods that would target and enhance obesity prevention. 
     In addition to genistein and daidzein, the glyceollins represent another group of phytoalexins whose biosynthesis is increased in response to stress signals. The glyceollin isomers I-III ( FIG. 1 ) are derived from the precursor daidzein and exhibit core structures similar to that of coumestrol. The glyceollins (I-III) can be derived from exposure of soybean to the fungus  Aspergillus sojae , a nontoxin-producing  Aspergillus  strain commonly used in the fermentation of soybeans to produce soy sauce and miso. Compared with genistein and daidzein, purified glyceollins show greater ability to modulate the activity of certain genes, including LXR receptors. These findings suggest that soy protein enriched with glyceollins may have distinct gene-modulating properties compared with standard soy protein. 
     There is a need to develop new treatments for obesity from both synthetic and natural sources. Thus, in view of the glyceollins&#39; modulatory effects on pathways involved in lipid and carbohydrate metabolism, including PPAR and adipocytokine signaling, lipoprotein lipase, triglyceride metabolism, and LXRs in vitro, and further in view of their lack of toxic activity, the efficacy of glyceollins as a novel obesity therapy in vivo was studied. 
     BRIEF SUMMARY OF THE INVENTION 
     The present invention relates to glyceollins isolated from elicited soy which have been discovered to have modulatory effects on pathways involved in lipid and carbohydrate metabolism, including PPAR and adipocytokine signaling, lipoprotein lipase, and triglyceride metabolism, and on LXRs. These glyceollins thus would be useful in the prevention and treatment of obesity, and cardiovascular diseases. 
     In accordance with this discovery, it is an object of the invention to provide isolated glyceollins (Glyceollin I, II, and III) from elicited soy. 
     It is a further object of the invention to provide a composition containing glyceollin for preventing or minimizing obesity. 
     It is another object of the invention to provide a method for lowering serum total cholesterol, specifically non-high-density lipoprotein cholesterol. 
     It is another object of the invention to provide a method for preventing or minimizing diabetes. 
     It is another object of the invention to provide a method for preventing or minimizing dyslipidemia. 
     It is another object of the invention to provide a method for preventing or minimizing atherosclerosis. 
     It is another object of the invention to provide a method for preventing and treating cardiac and vascular diseases linked to obesity and hyperlipidemia. 
     It is another object of the invention to provide a method for preventing, minimizing, or ameliorating diabetes. 
     Also part of this invention is a kit, comprising a glyceollin-containing composition for preventing or minimizing obesity, for lowering serum total cholesterol, specifically non-high-density lipoprotein cholesterol, or for preventing, minimizing, or ameliorating diabetes. 
     Also part of this invention is a kit, comprising a glyceollin-containing composition for preventing or minimizing obesity, dyslipidemia, atherosclerosis, or diabetes. 
     Further information on uses for glyceollins is disclosed in U.S. patent application Ser. No. 11/118,431, published as US 2006/0246162, the disclosure of which is hereby incorporated by reference. 
     Provided is a method of modulating the expression of genes linked to adipocytokine signaling, carbohydrate metabolism, fatty acid metabolism, arachidonic acid metabolism, PPAR signaling, insulin signaling, lipid metabolism, extracellular matrix (ECM)-receptor interaction, or combinations thereof, in an animal, comprising administering to said animal a composition comprising at least one isolated glyceollin. The at least one isolated glyceollin may be isolated from elicited soy, and may be glyceollin I, glyceollin II, glyceollin III, or combinations thereof. The at least one isolated glyceollin may be provided in an amount of from about 100 nM to about 50 μM. The at least one isolated glyceollin may be provided in an amount of from about 1 mg/kg/animal to about 100 mg/kg/animal. The genes may be upregulated, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin, and may be selected from the group consisting of: ADIPOQ; DGAT2; GPD1; GYS1; LEP; LPIN1; LPL; PLIN; PPARG; and combinations thereof. The genes may be upregulated, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin, and may be selected from the group consisting of: ACACB; ACAT 1; ACOX1; AGPAT 2; AHSG; AKT1; AKT2; CAP1; CD36; CEBPB; CRK; DBI; EIF2B1; EIF4EBP1; FBP1; FOS; GPD1; GPAM; HADH; HRAS1; ITGA7; LPL; MAP2K1; ORM1; PLIN; PRKAR2B; PTGDS; PTPN1; PTPN11; SORBS1; SREBF1; VEGFA; and combinations thereof. The genes may be downregulated, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin, and may be selected from the group consisting of: AEBP1; ARAF; CBL; CEBPA; CEBPD; CSN2; DOK2; DOK3; EIF4E; FRS3; G6PC; GCG; GCK; GPD2; GRB10; GRB2; GSK3B; IGF2; INS1; ITGA2; ITGA8; LDLR; NCK2; NOS2; NPY; OLR 1; PHIP; PIK3CA; PIK3R2; PPP1CA; PRKCI; PTPRF; RETN; SDC1; SHC3; SLC27A4; and combinations thereof. 
     Provided is a method of treating hyperlipidemia, obesity, excessive cholesterol, cardiovascular disease, liver disease, diabetes, or combinations thereof, in an animal in need thereof, comprising administering a composition comprising at least one isolated glyceollin to said animal. The at least one isolated glyceollin may be isolated from elicited soy, and may be glyceollin I, glyceollin II, glyceollin III, or combinations thereof. The at least one isolated glyceollin may be provided in an amount of from about 100 nM to about 50 μM. The at least one isolated glyceollin may be provided in an amount of from about 1 mg/kg/animal to about 100 mg/kg/animal. The method may further comprise increasing the expression in said animal of genes selected from the group consisting of: ADIPOQ; DGAT2; GPD1; GYS1; LEP; LPIN1; LPL; PLIN; PPARG; and combinations thereof, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin. The method may further comprise lowering total cholesterol (TC), lowering low-density lipoprotein (LDL) cholesterol and very low density lipoprotein (VLDL) cholesterol, raising triglycerides (TG), or combinations thereof in said animal, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin. The method may further comprise increasing the expression in said animal of genes selected from the group consisting of: ACACB; ACAT 1; ACOX1; AGPAT 2; AHSG; AKT1; AKT2; CAP1; CD36; CEBPB; CRK; DBI; EIF2B1; EIF4EBP1; FBP1; FOS; GPD1; GPAM; HADH; HRAS1; ITGA7; LPL; MAP2K1; ORM1; PLIN; PRKAR2B; PTGDS; PTPN1; PTPN11; SORBS1; SREBF1; VEGFA; and combinations thereof, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin. The method may further comprise decreasing the expression in said animal of genes selected from the group consisting of: AEBP1; ARAF; CBL; CEBPA; CEBPD; CSN2; DOK2; DOK3; EIF4E; FRS3; G6PC; GCG; GCK; GPD2; GRB10; GRB2; GSK3B; IGF2; INS1; ITGA2; ITGA8; LDLR; NCK2; NOS2; NPY; PHIP; PIK3CA; PIK3R2; PPP1CA; PTPRF; RETN; SDC1; SHC3; SLC27A4; and combinations thereof, relative to an animal that has not been administered said composition comprising at least one isolated glyceollin. 
     A method of stimulating glucose uptake in an animal in need thereof is provided, comprising administering a composition comprising at least one isolated glyceollin to said animal. The at least one isolated glyceollin may be isolated from elicited soy, and may be glyceollin I, glyceollin II, glyceollin III, or combinations thereof. The at least one isolated glyceollin may be provided in an amount of from about 100 nM to about 50 μM. The at least one isolated glyceollin may be provided in an amount of from about 1 mg/kg/animal to about 100 mg/kg/animal. The composition may further comprise insulin, or a further composition comprising insulin may also be administered to said animal. 
    
    
     
       BRIEF DESCRIPTION OF THE DRAWINGS 
       For a further understanding of the nature, objects, and advantages of the present disclosure, reference should be had to the following detailed description, read in conjunction with the following drawings, wherein like reference numerals denote like elements. 
         FIG. 1  shows the structures of the soy isoflavone phytoalexins genistein, daidzein, glyceollin I, glyceollin II, and glyceollin III. 
         FIG. 2  demonstrates the effect of glyceollins on upregulation of ABCG1, a gene which is involved in cholesterol efflux by Liver X Receptor in LNCaP Cells in vitro; ABCG1 is a LXR-responsive gene that functions as a cholesterol efflux pump. As shown in  FIG. 2 , results from LNCaP cell suggest a role for the glyceollins on LXR. Glyceollin treatment at 5 μM for 48 h led to an 8.1 fold up-regulation of ABCG1 (*=p&lt;0.01). 
         FIG. 3  is a Venn diagram showing the total number of genes (with GenBank identifiers) with FC&gt;1.5, ANOVA P&lt;0.05, quality&gt;2, and t-test P&lt;0.05 compared to casein/lactalbumin. 
         FIG. 4 :  FIG. 4A  shows a hierarchical clustering dendrogram, and  FIG. 4B  shows a principal component analysis for gene probes with FC&gt;1.5 and ANOVA P&lt;0.05 (n=252). Euclidean distance and average linkage were used for dendrogram and clustering. 
         FIG. 5  shows that the distinction in profiles for glyceollin from standard soy protein was also evident qualitatively from heatmaps for genes altered at FC&gt;1.5. 
         FIG. 6  shows the pathway analyses that were used to sort altered genes by canonical and functional categories. The most overrepresented canonical pathways in IPA for altered genes in the glyceollin group all related to lipid, carbohydrate, and/or energy metabolism (significantly altered at FC&gt;1.5 by GLY and SOY diets by Ingenuity pathway analysis). These pathways included glycerophospholipid and glycerolipid metabolism, cytochrome p450 metabolism, and AMPK signaling (P&lt;0.01 for all). 
         FIG. 7  shows a challenge map for the plates used with the insulin stimulation experiments of EXAMPLE 11. 
         FIG. 8  shows a challenge map for the plates used with the glyceollin incubation experiments of EXAMPLE 12. 
         FIG. 9  is a dose-response curve showing insulin-mediated glucose uptake by 3T3-L1 adipocytes. 
         FIG. 10  is a dose-response curve showing insulin-mediated glucose uptake by 3T3-L1 adipocytes starved of adipocyte maintenance medium for 24 hours prior to the experiment. 
         FIG. 11  is a dose-response curve, generated using a rapid-pipetting technique, showing insulin-mediated glucose uptake by 3T3-L1 adipocytes. 
         FIG. 12  shows the effects of glyceollin, insulin, or glyceollin plus insulin on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated for 24 hours with either KRH or with glyceollin. 
         FIG. 13  shows the effects, using a rapid-pipetting technique, of glyceollin, insulin, or glyceollin plus insulin on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated for 24 hours with either KRH or with glyceollin. Columns that differ from each other by p&lt;0.05 have differing superscript letters. 
         FIG. 14  shows the effects, using a rapid-pipetting technique, of glycinol, insulin, or glycinol plus insulin on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated for 24 hours with either KRH or with glycinol. The asterisk indicates significant difference from all other groups. 
         FIG. 15  shows the effects of a 30 minute exposure to insulin on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated with glyceollin. 
         FIG. 16  shows the effects of a 30 minute exposure to glyceollin, insulin, or glycinol on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated with KRH. Columns are as follows: 1) DMSO control; 2) KRH control; 3) Glyceollin Mix (5 μM); 4) Glyceollin I (5 μM); 5) Glyceollin II (5 μM); 6) Glyceollin III (5 μM); 7) Glycinol (1 μM); 8) Glycinol (0.1 μM). Columns that differ from each other by p&lt;0.05 have differing superscript letters. 
         FIG. 17  shows the effects of a 30 minute exposure to either glyceollin I or glyceollin III, with or without insulin, on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated with KRH. Columns are as follows: 1) DMSO control; 2) 0.3 nM insulin; 3) Glyceollin I (5 μM); 4) 0.3 nM insulin+Glyceollin I (1 μM); 5) 0.3 nM insulin+Glyceollin I (5 μM); 6) Glyceollin III (5 μM); 7) Glyceollin I (1 μM); 8) 0.3 nM insulin+Glyceollin III (5 μM). Columns that differ from each other by p&lt;0.05 have differing superscript letters. 
         FIG. 18  is a dose-response curve, generated using a rapid-pipetting technique, showing insulin-mediated glucose uptake by 3T3-L1 adipocytes. 
         FIG. 19  shows the effects of a 30 minute exposure to insulin on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated for 24 hours with either KRH or with glyceollin. 
         FIG. 20  shows the effects of a 30 minute exposure to insulin on glucose uptake by 3T3-L1 differentiated adipocytes pre-incubated for 3 hours with either KRH or with glyceollin. Columns that differ from each other by p&lt;0.05 have differing superscript letters. 
         FIG. 21  shows insulin-mediated glucose uptake by 3T3-L1 differentiated adipocytes after 45 minutes of exposure to either glyceollin (●) or KRH buffer (∘). Means are significantly different at all insulin concentrations (p&lt;0.05). 
         FIG. 22  shows glucose uptake by 3T3-L1 differentiated adipocytes preincubated for 24 hours with KRH, then incubated 45 minutes with different doses of glyceollin, and then 30 minutes with KRH. Columns that differ from each other by p&lt;0.05 have differing superscript letters. 
     
    
    
     DETAILED DESCRIPTION 
     Before the subject disclosure is further described, it is to be understood that the disclosure is not limited to the particular embodiments of the disclosure described below, as variations of the particular embodiments may be made and still fall within the scope of the appended claims. It is also to be understood that the terminology employed is for the purpose of describing particular embodiments, and is not intended to be limiting. Instead, the scope of the present disclosure will be established by the appended claims. 
     Other than in the operating examples, or where otherwise indicated, all numbers expressing quantities of ingredients, reaction conditions and so forth used in the specification and claims are to be understood as being modified in all instances by the term “about”. Accordingly, unless indicated to the contrary, the numerical parameters set forth in the instant specification and attached claims are approximations that may vary depending upon the desired properties sought to be obtained. At the very least, and not as an attempt to limit the application of the doctrine of equivalents to the scope of the claims, each numerical parameter should at least be construed in light of the number of reported significant digits and by applying ordinary rounding techniques. 
     Notwithstanding that the numerical ranges and parameters setting forth the broad scope of the instant disclosure are approximations, the numerical values set forth in the specific examples are reported as precisely as possible. Any numerical values, however, inherently contain certain errors necessarily resulting from the standard deviation found in their respective testing measurements. 
     It should also be understood that any numerical range recited herein is intended to include all sub-ranges subsumed therein. For example, a range of 1″ to 10″ is intended to include all sub-ranges between and including the recited minimum value of 1 and the recited maximum value of 10, that is, having a minimum value equal to or greater than 1 and a maximum value of equal to or less than 10. 
     In this specification and the appended claims, the singular forms “a,” “an,” and “the” include plural reference unless the context clearly dictates otherwise. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood to one of ordinary skill in the art to which this disclosure belongs. 
     As used herein, the term “minimize” or “reduce”, or a variant thereof, includes a complete or partial inhibition of a specified biological effect (which is apparent from the context in which the term minimize is used). The term “glyceollin” may mean both a single glyceollin and plural glyceollins when the glyceollin is defined as at least one of a selected group of glyceollins. 
     This disclosure describes, inter alia, the increased biosynthesis of the isoflavonoid phytoalexin compounds, Glyceollins I, II and III, in soy plants grown under stressed conditions (elicited soy) and their marked effects on LXRα and/or LXRβ function, pathways involved in lipid and carbohydrate metabolism, including PPAR and adipocytokine signaling, lipoprotein lipase, and triglyceride metabolism. To fully understand the role of glyceollins&#39; role in liver function, the well-established model of LNCaP cancer cells in an in vitro model was used to examine the effects of glyceollins on selective gene expression. In this model, using the LNCaP cancer cells, the in vitro activity of the glyceollins on LXRα or LXRβ has been established. 
     The glyceollin compounds used in the compositions and methods of the present invention are naturally occurring substances which may be found in plants such as soybeans that are stressed or that have been treated with elicitors. The glyceollin compounds may be isolated from the plant sources in which they naturally occur after treatment with an elicitor, or may be synthetically prepared by processes known in the art. 
     It is preferred to extract the glyceollins useful in the compositions and methods of the present invention from the plant materials in which they naturally occur. A preferred method of isolating the glyceollin compounds is to extract the plant materials with an alcohol, preferably methanol or ethanol, or an aqueous methanolic solution, to remove the glyceollins from the plant material. It is preferred to comminute the plant material before extracting the glyceollin compounds to maximize recovery of glyceollin compounds from the plant material. The glyceollin compounds are isolated from the extract by conventional separation procedures, such as high performance liquid chromatography, HPLC. 
     In a preferred embodiment, the glyceollin compounds are isolated from a soy material. Soy materials from which the glyceollin compounds can be isolated include elicitor-treated: soy seeds, soybeans, dehulled soybeans, soy cotyldeons, soy leaf tissue, soy roots, and soy hypocotyls. In one embodiment, the glyceollins are extracted from soy seeds, with a low molecular weight organic extractant, preferably an alcohol, ethyl acetate, acetone, or ether, and most preferably aqueous ethyl alcohol or methyl alcohol. 
     The present disclosure demonstrates that specific glyceollins, isolated from elicited soy, displayed modulatory effect on pathways involved in lipid and carbohydrate metabolism, including PPAR and adipocytokine signaling, lipoprotein lipase, and triglyceride metabolism in vivo, as well as on LXRα or LXRβ in vitro. The modulatory effects of the glyceollins (glyceollin I, glyceollin II, glyceollin II, or combinations thereof) can be observed at between about 0.5 and about 10 μM, about 0.5 and about 5.0 μM, about 0.5 and about 1.0 μM, about 1.0 and about 10 μM, about 1.0 and about 5 μM, about 5.0 and about 10 μM, and preferably about 5.0 μM. The modulatory effects of the glyceollins on LNCaP cells were similar to that observed for genistein ( FIG. 1 ). The glyceollins (glyceollin I, glyceollin II, glyceollin II, or combinations thereof) can be provided to, administered to, or consumed by an animal in an amount of greater than zero mg/kg to about 100 mg/kg, about 0.1 mg/kg to about 90 mg/kg, about 0.1 mg/kg to about 80 mg/kg, about 0.1 mg/kg to about 75 mg/kg, about 0.1 mg/kg to about 70 mg/kg, about 0.1 mg/kg to about 60 mg/kg, about 0.1 mg/kg to about 50 mg/kg, about 0.1 mg/kg to about 40 mg/kg, about 0.1 mg/kg to about 30 mg/kg, about 0.1 mg/kg to about 25 mg/kg, about 0.1 mg/kg to about 20 mg/kg, about 0.1 mg/kg to about 15 mg/kg, about 0.1 mg/kg to about 10 mg/kg, about 0.1 mg/kg to about 5 mg/kg, about 0.1 mg/kg to about 2.5 mg/kg, about 0.1 mg/kg to about 1 mg/kg, about 1 mg/kg to about 100 mg/kg, about 2.5 mg/kg to about 90 mg/kg, about 5 mg/kg to about 80 mg/kg, about 7.5 mg/kg to about 75 mg/kg, about 10 mg/kg to about 60 mg/kg, about 20 mg/kg to about 50 mg/kg, about 25 mg/kg to about 40 mg/kg, about 25 mg/kg to about 35 mg/kg, and preferably about 30 mg/kg per animal. 
     Materials and Methods: Liver X Receptors 
     Chemicals 
     Dihydrotestosterone (DHT), dimethylsulfoxide (DMSO), and genistein, 17β-estradiol were from Sigma Chemical Co. (St. Louis, Mo.). Cell culture media and reagents were purchased from Invitrogen (Carlsbad, Calif.). 
     Soybean Treatment and Harvesting 
       Aspergillus sojae  (SRRC 1125) cultures were grown at 25° C. in the dark on potato dextrose agar. After 5 days, inoculum was prepared by harvesting conidia (3.4×10 7 /ml) in 15 ml sterile, distilled H 2 O. Seeds from commercial soybean variety Asgrow 5902 were surface-sterilized for 3 min in 70% ethanol followed by a quick deionized-H 2 O rinse and two 2 min rinses in deionized-H 2 O. Seeds were presoaked in sterile deionized-H 2 O for 4-5 hr, and then chopped for 2 min in a Cuisinart food processor.  Aspergillus sojae  spore suspension (300 ml) was applied to the cut surface of seeds on each tray. All trays were stored at 25° C. in the dark for three days, rinsed with water to remove spores, and oven dried at 40° C. for 24 hrs. Seeds were ground using a Waring blender before extraction. 
     Isolation of Glyceollins (I-III) 
     The glyceollins I, II, and III were extracted from the 300 g ground seeds with 1 L methanol. The glyceollins were isolated using preparative scale HPLC using two Waters 25 mm 10 mm particle size mBondapak C18 radial compression column segments combined using an extension tube. HPLC was performed on a Waters 600E System Controller combined with a Waters UV-VIS 996 detector. Elution was carried out at a flow rate of 8.0 ml/min with the following solvent system: A=acetonitrile, B=water; 5% A for 10 min, then 5% A to 90% A in 60 min followed by holding at 90% A for 20 min. The injection volume was 20 mL. The fraction containing the glyceollins was concentrated under vacuum and freeze-dried. The glyceollins were confirmed by UV-VIS spectrophotometry, mass spectrometry, and NMR. The solvents acetonitrile (HPLC grade) and methanol were purchased from Aldrich Chemical Company. Water was obtained using a Millipore system and used during sample preparation procedures and HPLC analyses. A mixture of glyceollins I (68%), II (21%), and III (11%) were isolated (see  FIG. 1 ) and used in treatments. An average MW of 338 was use to calculate the concentration of glyceollins used in all cell culture experiments. 
     Cells and Cell Culture 
     LNCaP cells were obtained from the American Type Culture Collection (Manassas, Va.) and maintained in Media A [RPMI 1640 medium with phenol red (Invitrogen, Carlsbad, Calif.), 2 mM L-glutamine (Sigma), 100 U/mL penicillin and 100 μg/mL streptomycin (BioSource International, Camarillo, Calif.) with 10% fetal bovine serum (FBS) (Invitrogen, Carlsbad, Calif.)]. Cells were incubated in the presence of 5% CO 2  in air at 37° C. 
     Gene SuperArrays with MCF-7 Cells In Vitro. 
     MCF-7 cells were seeded into 75 cm2 flasks in DMEM media supplemented with 5% fetal bovine serum. On the following day media was replaced with phenol-red free DMEM supplemented with 5% charcoal stripped serum for 2 days. Cells were treated with DMSO (vehicle), 1 nM 17β-estradiol, 10 μM glyceollin mixture and 100 nM tamoxifen. Total RNA was extracted. Each array profiles the expression of a panel of 96 genes. For each array, 4 μg RNA was reverse transcribed into cDNA in the presence of gene-specific oligonucleotide primers as described in the manufacturer&#39;s protocol. cDNA template was mixed with the appropriate ready-to-use PCR master mix, equal volumes were aliquoted to each well of the same plate, and then the real-time PCR cycling program was run. Quantitative RT-PCR and Estrogen Receptor Signaling Superarray, Gaithersburg, Md., USA). Relative gene expressions were calculated by using the 2− ΔΔCt  method, in which Ct indicates the fractional cycle number where the fluorescent signal reaches detection threshold. The ‘delta-delta’ method (which is described by Pfaffl et al.,) uses the normalized ΔCt value of each sample, calculated using a total of five endogenous control genes (18S rRNA, HPRT1, RPL13A, GAPDH, and ACTB). Fold change values are then presented as average fold change=2−( average ΔΔCt ) for genes in treated relative to control samples. Clinical variables were characterized using descriptive statistics, and the statistical significance of differences in gene expression between groups was calculated using the student&#39;s t-test. 
     Primate Study and Diets 
     The inventors used 30 adult female surgically menopausal cynomolgus macaques ( Macaca fascicularis ) with an average age of 17.8±0.5 years. All animals had been ovariectomized for 4 yr and housed since that time in stable social groups of three to four animals each. These animals were previously enrolled in a randomized Latin-square crossover study evaluating soy isoflavone effects when given with either trace or low-dose oral estradiol. In this previous study, each social group of animals received the same experimental treatments but in a different sequence. No significant carryover effects were found for any breast endpoints across the 4-wk washout periods between treatment phases. The estradiol doses used in the previous study (equivalent to 0.09 or 0.5 mg/day in women) were less than those typically prescribed to postmenopausal women for hormone therapy (˜1.0 mg/day), and the isoflavone doses (equivalent to 0, 60, 120, or 240 mg/day in women) were within the range of human dietary or supplement exposure. There is no evidence that this level of estrogen or isoflavone exposure alters the subsequent hormonal response of the adult mammary gland. For the current study, the monkeys all received a control casein/lactalbumin-based diet for 6 wk before the start of the experiment. Animals were then randomized by social group to receive one of three diets containing the following: 1) estradiol (E2, 1 mg/1,800 kcal)+casein/lactalbumin [control (Con), n=9]; 2) E2+soy protein isolate (SPI) containing 193.6 mg/1,800 kcal isoflavonoids (n=11); and 3) E2+glyceollin-enriched soy protein (GLY) containing 188.5 mg/1,800 kcal isoflavonoids and 134.1 mg/1,800 kcal glyceollins (n=10). The control diet contained a trace amount of soy protein delivering 6.7 mg/1,800 kcal isoflavonoids. All isoflavonoid doses are expressed in aglycone equivalents. Diets were isocaloric and similar in macronutrients, cholesterol, calcium, and phosphorus. The glyceollin-enriched protein was produced by enzymatic treatment of scarred soybeans (Glycine max) to induce conversion of the parent isoflavone daidzein to glyceollins. The beans were then ground, defatted, and incorporated into a fiber concentrate. The GLY supplement contained 959.5 μg of unconjugated glyceollins per gram of product (76.8% glyceollin I, 9.9% glyceollin II, and 13.6% glyceollin III), as determined by high-pressure liquid chromatography (HPLC) and ultraviolet (UV) monitoring (visible spectrophotometry). Glyceollin HPLC analyses were performed on a Waters 600E System Controller combined with a UV-VIS 996 detector. Glyceollins were extracted and homogenized in 0.5 ml 80% EtOH, heated at 50° C. for 1 h, cooled, centrifuged at 14,000 g for 10 min, and filtered. An aliquot (20 μl) of supernatant was directly analyzed by HPLC. Glyceollins were monitored at a wavelength of 285 nm, and separations were carried out using a Vydac Multiring C18 (4.6×250 mm; 5 μm) reverse-phase column. Elution was carried out at a flow rate of 1.0 ml/min using a standard solvent system. All HPLC analyses were run in triplicate. Relative isoflavonoid content was also measured per 75 units as 61.5% genistein, 34.6% daidzein, and 3.8% glyceitein for the soy protein isolate and 52.6% genistein, 43.0% daidzein, and 4.4% glyceitein for the glyceollin-enriched protein. To balance the diets, a fiber concentrate (FIBRIM 2000®) was added to the control and SPI diets. This concentrate contained a small amount of soy protein (11.4% by weight) providing 0.17 mg isoflavonoids per gram of product (as measured by HPLC). The soy protein isolate and fiber concentrate were generously provided by Solae, a division of Dupont (St. Louis, Mo.). The glyceollin-enriched protein was provided through collaborative efforts of Solae; the Southern Regional Research Center, United States Department of Agriculture; and the Tulane University School of Medicine. Estradiol tablets were obtained from Mylan Pharmaceuticals (Morganton, W. Va.). Animals were fed approximately 120 kcal/kg body weight (BW) once daily. Daily doses of estradiol, isoflavonoids, and glyceollins were scaled to 1,800 kcal of diet (the estimated daily intake for a U.S. woman) to account for differences in metabolic rates between the monkeys and human subjects. Monkeys were thus given 66.7 μg of E2/kg BW (all groups); 0.44 mg (Con), 12.91 mg (SPI), or 12.57 mg (GLY) of isoflavonoids/kg BW; and 8.94 mg glyceollins/kg BW (GLY) each day. Of note, the initial SPI and GLY diet formulations lacked adequate palatability, requiring all the animals to be placed on the control group diet (with E2) for 1 wk 14 days into the experiment. All diets were reformulated during this time with sweetened applesauce and fed henceforth for 3 weeks without compliance problems. All procedures involving these animals were conducted in compliance with state and federal laws, standards of the U.S. Department of Health and Human Services, and guidelines established by the Wake Forest University Animal Care and Use Committee (ACUC). The facilities and laboratory animal program of Wake Forest University are fully accredited by the Association for the Assessment and Accreditation of Laboratory Animal Care. 
     Primate Breast Biopsies 
     At the beginning and end of the dietary treatment period, the animals were anesthetized with ketamine and buprenorphine for breast biopsy, blood collection, uterine ultrasound, vaginal cytology, and body weight measurement. For the breast biopsy, a 1.5-cm incision was made in a preselected breast quadrant, and a small (˜0.4 g) sample of mammary gland was removed. The incision was sutured, and the animals were monitored and given analgesia during recovery following ACUC-approved clinical procedures. The biopsy site was tattooed to prevent later resampling at the same site. Half of the biopsy sample was frozen; the other half was fixed at 4° C. in 4% paraformaldehyde for 24 h and then processed for histology using standard procedures. 
     Example 1 
     Glyceollins Upregulate ABCG1 via Liver X Receptor in LNCaP Cells In Vitro 
     As shown in  FIG. 1 , results from LNCaP cell suggest a role for the glyceollins on LXR. Glyceollin treatment at 5 μM for 48 h led to an 8.1 fold up-regulation of ABCG1. A significant up-regulation for ABCA1 was also observed (data not shown). Genistein treatment led to a 3 fold up-regulation, and daidzein and genistein led to a 2 fold up-regulation. 
     Example 2 
     Glyceollin Treatments Lead to Up Regulation of LXR Responsive Genes ABCG1 and ABCA1 
     The two LXR responsive genes ABCG1 and ABCA1 work in tandem as a cholesterol efflux pump. These molecular effects provide potential mechanisms by which soy glyceollins may provide protection against obesity and obesity related syndrome such as hypercholesterolemia and inflammation. LXRα and LXRβ isotypes have been studied for their critical role in limiting accumulation of free cholesterol in peripheral tissue and macrophages through regulation of reverse cholesterol transporters ATP-binding cassette, subfamily A, member 1 (ABCA1) and subfamily member G1 (ABCG1; 4-5). LXRα is primarily expressed in liver, adipose, and enterocytes where LXRβ is expressed ubiquitously. 
     Example 3 
     Glyceollins Alter Gene Expression in MCF7 Cells In Vitro 
     TABLE 1 shows the results of a SuperArray analysis of genes altered by estradiol, a glyceollin mixture, and tamoxifen treatment in MCF-7 cells. Numbers in bold indicate fold changes in gene expression greater than 1.5. Upon examination of the differential effects of glyceollin and tamoxifen treatment on both SDF-1 and PgR gene expression, we sought to further investigate the differences between the two compounds using a more extensive panel of genes which are commonly altered in breast cancer and estrogen signaling by performing a superarray analyses. Based on the above real time RT-PCR data we chose to treat the MCF-7 cells for four hours with DMSO (vehicle), 1 nM E2, 100 nM tamoxifen or 10 μM glyceollin. Total RNA was extracted, quantitated and a real-time PCR array was performed. The inventors identified several genes up-regulated by Glyceollin: SREBF1, SREBF2, ACOX1, PPARA, FASN, AGPAT7, AGPAT6, SCD5, CPT2, ABCG1, ACO2, ECH1, ECHDC1, ECHDC2, ECHDC3. 
     
       
         
               
               
               
               
               
             
               
               
               
               
               
             
           
               
                 TABLE 1 
               
               
                   
               
               
                 Estrogen 
                 GLY 
                 TAM 
                 Gene 
                 Description 
               
               
                   
               
             
             
               
                   
               
             
          
           
               
                 0.917639882 
                 
                   2.139094176 
                 
                 
                   1.631274987 
                 
                 SREBF1 
                   Homo sapiens  sterol regulatory element binding 
               
               
                   
                   
                   
                   
                 transcription factor 1 (SREBF1), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_001005291] 
               
               
                 0.982820599 
                 
                   1.531557997 
                 
                 1.258757174 
                 SREBF2 
                   Homo sapiens  sterol regulatory element binding 
               
               
                   
                   
                   
                   
                 transcription factor 2 (SREBF2), mRNA 
               
               
                   
                   
                   
                   
                 [NM_004599] 
               
               
                 1.035264924 
                 1.437936533 
                 1.300440147 
                 SREBF2 
                 Sterol regulatory element-binding protein 2 
               
               
                   
                   
                   
                   
                 (SREBP-2) (Sterol regulatory element-binding 
               
               
                   
                   
                   
                   
                 transcription factor 2). 
               
               
                   
                   
                   
                   
                 [Source: Uniprot/SWISSPROT; Acc: Q12772] 
               
               
                   
                   
                   
                   
                 [ENST00000361204] 
               
               
                 0.922742493 
                 
                   1.53581027 
                 
                 1.377450046 
                 PPARA 
                   Homo sapiens  peroxisome proliferator-activated 
               
               
                   
                   
                   
                   
                 receptor alpha (PPARA), transcript variant 5, mRNA 
               
               
                   
                   
                   
                   
                 [NM_005036] 
               
               
                 0.927230546 
                 1.157490217 
                 1.204972315 
                 PPARG 
                   Homo sapiens  peroxisome proliferator-activated 
               
               
                   
                   
                   
                   
                 receptor gamma (PPARG), transcript variant 3, 
               
               
                   
                   
                   
                   
                 mRNA [NM_138711] 
               
               
                 0.893165852 
                 
                   1.343503426 
                 
                 1.175276328 
                 ACOX1 
                   Homo sapiens  acyl-Coenzyme A oxidase 1, 
               
               
                   
                   
                   
                   
                 palmitoyl (ACOX1), transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_004035] 
               
               
                 0.944092419 
                 1.28788163 
                 1.095811766 
                 CPT1A 
                 Carnitine O-palmitoyltransferase I, liver isoform (EC 
               
               
                   
                   
                   
                   
                 2.3.1.21) (CPTI) (CPTI-L) (Carnitine 
               
               
                   
                   
                   
                   
                 palmitoyltransferase 1A). 
               
               
                 1.006257823 
                 
                   1.485552921 
                 
                 1.310393404 
                 CPT1A 
                   Homo sapiens  carnitine palmitoyltransferase 1A 
               
               
                   
                   
                   
                   
                 (liver) (CPT1A), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_001876] 
               
               
                 1.082224645 
                 1.979313313 
                 1.52414483 
                 UCP2 
                   Homo sapiens  uncoupling protein 2 (mitochondrial, 
               
               
                   
                   
                   
                   
                 proton carrier) (UCP2), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, mRNA [NM_003355] 
               
               
                 1.299539062 
                 1.483494934 
                 1.346300069 
                 SERBP1 
                   Homo sapiens  SERPINE1 mRNA binding protein 1 
               
               
                   
                   
                   
                   
                 (SERBP1), transcript variant 4, mRNA 
               
               
                   
                   
                   
                   
                 [NM_015640] 
               
               
                 1.4063932 
                 2.0265138 
                 1.586667686 
                 FASN 
                   Homo sapiens  fatty acid synthase (FASN), mRNA 
               
               
                   
                   
                   
                   
                 [NM_004104] 
               
               
                 1.516767545 
                 1.623379162 
                 1.404444876 
                 FASTKD2 
                   Homo sapiens  FAST kinase domains 2 (FASTKD2), 
               
               
                   
                   
                   
                   
                 mRNA [NM_014929] 
               
               
                 2.345669898 
                 2.529759085 
                 1.312211255 
                 SGEF 
                   Homo sapiens  infant liver cDNA, clone: HMFN1864, 
               
               
                   
                   
                   
                   
                 full insert sequence. [AB073386] 
               
               
                 0.744322628 
                 1.241427492 
                 1.372684431 
                 ACSL3 
                   Homo sapiens  acyl-CoA synthetase long-chain 
               
               
                   
                   
                   
                   
                 family member 3 (ACSL3), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_004457] 
               
               
                 0.768437591 
                 1.608816742 
                 1.22010051 
                 AGPAT7 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 7 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, eta) (AGPAT7), mRNA 
               
               
                   
                   
                   
                   
                 [NM_153613] 
               
               
                 1.483494934 
                 1.484523571 
                 1.178539408 
                 AGPAT5 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 5 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, epsilon) (AGPAT5), mRNA 
               
               
                   
                   
                   
                   
                 [NM_018361] 
               
               
                 1.108032348 
                 1.599920257 
                 1.370782805 
                 SCD5 
                   Homo sapiens  stearoyl-CoA desaturase 5 (SCD5), 
               
               
                   
                   
                   
                   
                 transcript variant 1, mRNA [NM_001037582] 
               
               
                 1.00486382 
                 1.071773463 
                 1.00486382 
                 SCD5 
                   Homo sapiens  stearoyl-CoA desaturase 5, mRNA 
               
               
                   
                   
                   
                   
                 (cDNA clone IMAGE: 3607979), complete cds. 
               
               
                   
                   
                   
                   
                 [BC004936] 
               
               
                 1.021720083 
                 0.965936329 
                 1.054822317 
                 SCD5 
                   Homo sapiens  stearoyl-CoA desaturase 5 (SCD5), 
               
               
                   
                   
                   
                   
                 transcript variant 2, mRNA [NM_024906] 
               
               
                 1.073260286 
                 1.282536603 
                 1.121943481 
                 ACACA 
                   Homo sapiens  acetyl-Coenzyme A carboxylase 
               
               
                   
                   
                   
                   
                 alpha (ACACA), transcript variant 2, mRNA 
               
               
                   
                   
                   
                   
                 [NM_198839] 
               
               
                 0.967947027 
                 1.493813457 
                 1.32317144 
                 CPT1C 
                   Homo sapiens  carnitine palmitoyltransferase 1C 
               
               
                   
                   
                   
                   
                 (CPT1C), mRNA [NM_152359] 
               
               
                 1.25962998 
                 2.084931522 
                 2.106722072 
                 CPT2 
                   Homo sapiens  carnitine palmitoyltransferase II 
               
               
                   
                   
                   
                   
                 (CPT2), nuclear gene encoding mitochondrial 
               
               
                   
                   
                   
                   
                 protein, mRNA [NM_000098] 
               
               
                 0.702222438 
                 1.155085785 
                 0.916368645 
                 CPT1B 
                   Homo sapiens  carnitine palmitoyltransferase 1B 
               
               
                   
                   
                   
                   
                 (muscle) (CPT1B), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, transcript variant 3, mRNA 
               
               
                   
                   
                   
                   
                 [NM_152246] 
               
               
                 1.021720083 
                 1.301341855 
                 1.071030823 
                 ACSM3 
                   Homo sapiens  acyl-CoA synthetase medium-chain 
               
               
                   
                   
                   
                   
                 family member 3 (ACSM3), transcript variant 2, 
               
               
                   
                   
                   
                   
                 mRNA [NM_202000] 
               
               
                 1.652900636 
                 2.243886961 
                 1.958840595 
                 ACSS1 
                   Homo sapiens  acyl-CoA synthetase short-chain 
               
               
                   
                   
                   
                   
                 family member 1 (ACSS1), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, mRNA [NM_032501] 
               
               
                 0.955282936 
                 1.303147149 
                 1.162314108 
                 ACSS2 
                   Homo sapiens  acyl-CoA synthetase short-chain 
               
               
                   
                   
                   
                   
                 family member 2 (ACSS2), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_018677] 
               
               
                 0.961927455 
                 1.197478705 
                 1.217566019 
                 IL1RN 
                   Homo sapiens  interleukin 1 receptor antagonist 
               
               
                   
                   
                   
                   
                 (IL1RN), transcript variant 1, mRNA [NM_173842] 
               
               
                 1.00486382 
                 1.071773463 
                 1.051172909 
                 IL1RN 
                   Homo sapiens  interleukin 1 receptor antagonist, 
               
               
                   
                   
                   
                   
                 mRNA (cDNA clone IMAGE: 5270437), partial cds. 
               
               
                   
                   
                   
                   
                 [BC068441] 
               
               
                 1.011152081 
                 1.038139271 
                 1.082975046 
                 ABCA1 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 1 (ABCA1), mRNA [NM_005502] 
               
               
                 0.965267025 
                 1.081474763 
                 1.057750964 
                 ABCA1 
                   Homo sapiens  cDNA FLJ14266 fis, clone 
               
               
                   
                   
                   
                   
                 PLACE1002437, highly similar to ATP-BINDING 
               
               
                   
                   
                   
                   
                 CASSETTE TRANSPORTER 1. [AK024328] 
               
               
                 1.02313747 
                 1.042465761 
                 1.043188594 
                 ABCA1 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 1 (ABCA1), mRNA [NM_005502] 
               
               
                 0.987600861 
                 1.068065408 
                 1.019597683 
                 ABCA10 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 10 (ABCA10), mRNA 
               
               
                   
                   
                   
                   
                 [NM_080282] 
               
               
                 1.070288698 
                 1.028826708 
                 1.0132569 
                 ABCA13 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 13 (ABCA13), mRNA 
               
               
                   
                   
                   
                   
                 [NM_152701] 
               
               
                 1.922521857 
                 1.655193632 
                 1.333298677 
                 ABCA3 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 3 (ABCA3), mRNA [NM_001089] 
               
               
                 0.76101669 
                 0.965936329 
                 0.874784765 
                 ABCA5 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 5 (ABCA5), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_018672] 
               
               
                 0.988970916 
                 1.082224645 
                 1.042465761 
                 ABCA6 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 6 (ABCA6), mRNA [NM_080284] 
               
               
                 0.880869374 
                 1.297738767 
                 1.151089491 
                 ABCA7 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 7 (ABCA7), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_019112] 
               
               
                 1.071030823 
                 1.033830736 
                 1.016774673 
                 ABCA8 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 8 (ABCA8), mRNA [NM_007168] 
               
               
                 1.016070143 
                 1.016774673 
                 1.076986376 
                 ABCA9 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 9 (ABCA9), mRNA [NM_080283] 
               
               
                 1.024556823 
                 1.318593614 
                 1.137605228 
                 ABCA11 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 11 (pseudogene) (ABCA11) on 
               
               
                   
                   
                   
                   
                 chromosome 4 [NR_002451] 
               
               
                 0.76630998 
                 1.652900636 
                 1.374588696 
                 ABCA12 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 12 (ABCA12), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_173076] 
               
               
                 0.620283649 
                 2.051956291 
                 1.22010051 
                 ABCG1 
                   Homo sapiens  ATP-binding cassette, sub-family G 
               
               
                   
                   
                   
                   
                 (WHITE), member 1 (ABCG1), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_207630] 
               
               
                 0.944747041 
                 1.413233644 
                 1.616641738 
                 ACSL1 
                   Homo sapiens  acyl-CoA synthetase long-chain 
               
               
                   
                   
                   
                   
                 family member 1 (ACSL1), mRNA [NM_001995] 
               
               
                 0.91319825 
                 1.436940177 
                 1.295940965 
                 ACSS2 
                   Homo sapiens  acyl-CoA synthetase short-chain 
               
               
                   
                   
                   
                   
                 family member 2 (ACSS2), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_018677] 
               
               
                 1.178539408 
                 1.469168633 
                 1.387030969 
                 AACS 
                   Homo sapiens  acetoacetyl-CoA synthetase (AACS), 
               
               
                   
                   
                   
                   
                 mRNA [NM_023928] 
               
               
                 1.719512972 
                 1.695839929 
                 1.756860936 
                 ACSS1 
                   Homo sapiens  acyl-CoA synthetase short-chain 
               
               
                   
                   
                   
                   
                 family member 1 (ACSS1), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, mRNA [NM_032501] 
               
               
                 1.408344227 
                 1.529436278 
                 1.43893358 
                 IRS2 
                   Homo sapiens  insulin receptor substrate 2 (IRS2), 
               
               
                   
                   
                   
                   
                 mRNA [NM_003749] 
               
               
                 0.942784536 
                 1.271031689 
                 1.266634254 
                 ACO1 
                   Homo sapiens  aconitase 1, soluble (ACO1), mRNA 
               
               
                   
                   
                   
                   
                 [NM_002197] 
               
               
                 1.163120042 
                 1.832737289 
                 1.618884433 
                 ACO2 
                   Homo sapiens  aconitase 2, mitochondrial (ACO2), 
               
               
                   
                   
                   
                   
                 nuclear gene encoding mitochondrial protein, 
               
               
                   
                   
                   
                   
                 mRNA [NM_001098] 
               
               
                 1.043188594 
                 1.407368375 
                 1.223488041 
                 AGPAT3 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 3 (AGPAT3), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_020132] 
               
               
                 1.062159186 
                 1.4054187 
                 1.271913007 
                 AGPAT3 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 3 (AGPAT3), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_020132] 
               
               
                 1.230291345 
                 2.225300241 
                 2.139094176 
                 ECH1 
                   Homo sapiens  enoyl Coenzyme A hydratase 1, 
               
               
                   
                   
                   
                   
                 peroxisomal (ECH1), mRNA [NM_001398] 
               
               
                 1.154285418 
                 1.419123356 
                 1.495885758 
                 ECHDC1 
                   Homo sapiens  enoyl Coenzyme A hydratase 
               
               
                   
                   
                   
                   
                 domain containing 1 (ECHDC1), mRNA 
               
               
                   
                   
                   
                   
                 [NM_018479] 
               
               
                 1.209994089 
                 2.0265138 
                 1.70408819 
                 ECHDC2 
                   Homo sapiens  enoyl Coenzyme A hydratase 
               
               
                   
                   
                   
                   
                 domain containing 2 (ECHDC2), mRNA 
               
               
                   
                   
                   
                   
                 [NM_018281] 
               
               
                 1.261377409 
                 2.009727641 
                 1.526259209 
                 ECHDC3 
                   Homo sapiens  enoyl Coenzyme A hydratase 
               
               
                   
                   
                   
                   
                 domain containing 3 (ECHDC3), mRNA 
               
               
                   
                   
                   
                   
                 [NM_024693] 
               
               
                 1.154285418 
                 1.496922987 
                 1.500038989 
                 ECHS1 
                   Homo sapiens  enoyl Coenzyme A hydratase, short 
               
               
                   
                   
                   
                   
                 chain, 1, mitochondrial (ECHS1), nuclear gene 
               
               
                   
                   
                   
                   
                 encoding mitochondrial protein, mRNA 
               
               
                   
                   
                   
                   
                 [NM_004092] 
               
               
                 1.10343374 
                 1.346300069 
                 1.337927555 
                 IDE 
                   Homo sapiens  insulin-degrading enzyme (IDE), 
               
               
                   
                   
                   
                   
                 mRNA [NM_004969] 
               
               
                 0.981459064 
                 1.599920257 
                 1.337927555 
                 IGF2R 
                   Homo sapiens  insulin-like growth factor 2 receptor 
               
               
                   
                   
                   
                   
                 (IGF2R), mRNA [NM_000876] 
               
               
                 0.938221197 
                 1.53261996 
                 1.546492675 
                 LEPROT 
                   Homo sapiens  leptin receptor overlapping transcript 
               
               
                   
                   
                   
                   
                 (LEPROT), mRNA [NM_017526] 
               
               
                 1.082224645 
                 1.979313313 
                 1.52414483 
                 UCP2 
                   Homo sapiens  uncoupling protein 2 (mitochondrial, 
               
               
                   
                   
                   
                   
                 proton carrier) (UCP2), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, mRNA [NM_003355] 
               
               
                 0.784040454 
                 1.374588696 
                 1.221793102 
                 IGFBP5 
                   Homo sapiens  insulin-like growth factor binding 
               
               
                   
                   
                   
                   
                 protein 5 (IGFBP5), mRNA [NM_000599] 
               
               
                 0.798851916 
                 1.160703914 
                 1.25092908 
                 LEPROT 
                   Homo sapiens  leptin receptor overlapping transcript 
               
               
                   
                   
                   
                   
                 (LEPROT), mRNA [NM_017526] 
               
               
                 1.284315809 
                 1.335148303 
                 1.092020546 
                 IGF1R 
                   Homo sapiens  insulin-like growth factor 1 receptor 
               
               
                   
                   
                   
                   
                 (IGF1R), mRNA [NM_000875] 
               
               
                 1.263127262 
                 1.387992719 
                 1.082224645 
                 IGF1R 
                   Homo sapiens  insulin-like growth factor 1 receptor 
               
               
                   
                   
                   
                   
                 (IGF1R), mRNA [NM_000875] 
               
               
                 1.221793102 
                 1.395710764 
                 1.100378609 
                 IGF1R 
                   Homo sapiens  insulin-like growth factor 1 receptor 
               
               
                   
                   
                   
                   
                 (IGF1R), mRNA [NM_000875] 
               
               
                 1.23370717 
                 1.381274448 
                 1.0453601 
                 IGF1R 
                   Homo sapiens  insulin-like growth factor 1 receptor 
               
               
                   
                   
                   
                   
                 (IGF1R), mRNA [NM_000875] 
               
               
                 1.25092908 
                 1.446934886 
                 1.011152081 
                 IGF1R 
                   Homo sapiens  insulin-like growth factor 1 receptor 
               
               
                   
                   
                   
                   
                 (IGF1R), mRNA [NM_000875] 
               
               
                 3.988925005 
                 2.491474831 
                 1.22603486 
                 IGFBP4 
                   Homo sapiens  insulin-like growth factor binding 
               
               
                   
                   
                   
                   
                 protein 4 (IGFBP4), mRNA [NM_001552] 
               
               
                 1.0181852 
                 1.250062303 
                 1.092777739 
                 AGPAT3 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 3 (AGPAT3), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_020132] 
               
               
                 1.893427262 
                 2.199232299 
                 1.695839929 
                 AGPAT6 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 6 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, zeta) (AGPAT6), mRNA 
               
               
                   
                   
                   
                   
                 [NM_178819] 
               
               
                 1.842928372 
                 2.340797283 
                 1.711190051 
                 AGPAT6 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 6 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, zeta) (AGPAT6), mRNA 
               
               
                   
                   
                   
                   
                 [NM_178819] 
               
               
                 0.962594443 
                 1.262252032 
                 1.204137381 
                 ECH1 
                 Homo sapiens, clone IMAGE: 3858114, mRNA. 
               
               
                   
                   
                   
                   
                 [BC014786] 
               
               
                 1.399585866 
                 2.199232299 
                 1.496922987 
                 ECHDC3 
                   Homo sapiens  enoyl Coenzyme A hydratase 
               
               
                   
                   
                   
                   
                 domain containing 3 (ECHDC3), mRNA 
               
               
                   
                   
                   
                   
                 [NM_024693] 
               
               
                 1.041743429 
                 1.35754498 
                 1.29145735 
                 GPATCH1 
                   Homo sapiens  G patch domain containing 1 
               
               
                   
                   
                   
                   
                 (GPATCH1), mRNA [NM_018025] 
               
               
                 1.244874235 
                 1.104198847 
                 1.065108203 
                 IGF2 
                   Homo sapiens  insulin-like growth factor 2 
               
               
                   
                   
                   
                   
                 (somatomedin A) (IGF2), transcript variant 2, mRNA 
               
               
                   
                   
                   
                   
                 [NM_001007139] 
               
               
                 0.944747041 
                 1.174461971 
                 1.101141598 
                 ACACB 
                   Homo sapiens  acetyl-Coenzyme A carboxylase 
               
               
                   
                   
                   
                   
                 beta (ACACB), mRNA [NM_001093] 
               
               
                 0.924022572 
                 1.139183377 
                 1.165541198 
                 ACO1 
                   Homo sapiens  aconitase 1, soluble (ACO1), mRNA 
               
               
                   
                   
                   
                   
                 [NM_002197] 
               
               
                 0.993092495 
                 1.098854218 
                 1.042465761 
                 ACOX1 
                   Homo sapiens  acyl-Coenzyme A oxidase 1, 
               
               
                   
                   
                   
                   
                 palmitoyl (ACOX1), transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_004035] 
               
               
                 1.016070143 
                 1.0132569 
                 1.022428531 
                 ACOXL 
                   Homo sapiens  acyl-Coenzyme A oxidase-like 
               
               
                   
                   
                   
                   
                 (ACOXL), mRNA [NM_018308] 
               
               
                 1.0181852 
                 1.02313747 
                 0.999307093 
                 ACSBG1 
                   Homo sapiens  acyl-CoA synthetase bubblegum 
               
               
                   
                   
                   
                   
                 family member 1 (ACSBG1), mRNA [NM_015162] 
               
               
                 1.01395948 
                 1.057750964 
                 1.031683179 
                 ACSBG2 
                   Homo sapiens  acyl-CoA synthetase bubblegum 
               
               
                   
                   
                   
                   
                 family member 2 (ACSBG2), mRNA [NM_030924] 
               
               
                 0.612592666 
                 1.092020546 
                 1.034547582 
                 ACSL3 
                   Homo sapiens  acyl-CoA synthetase long-chain 
               
               
                   
                   
                   
                   
                 family member 3 (ACSL3), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_004457] 
               
               
                 0.974679631 
                 1.083725967 
                 1.051901779 
                 ACSL4 
                   Homo sapiens  acyl-CoA synthetase long-chain 
               
               
                   
                   
                   
                   
                 family member 4 (ACSL4), transcript variant 1, 
               
               
                   
                   
                   
                   
                 mRNA [NM_004458] 
               
               
                 0.997922719 
                 1.056285625 
                 1.042465761 
                 ACSL5 
                   Homo sapiens  acyl-CoA synthetase long-chain 
               
               
                   
                   
                   
                   
                 family member 5 (ACSL5), transcript variant 3, 
               
               
                   
                   
                   
                   
                 mRNA [NM_203380] 
               
               
                 1.062159186 
                 1.021012126 
                 1.052631155 
                 ACSL6 
                   Homo sapiens  mRNA for KIAA0837 protein, partial 
               
               
                   
                   
                   
                   
                 cds. [AB020644] 
               
               
                 1.010451446 
                 1.062895674 
                 1.044635763 
                 ACSL6 
                   Homo sapiens  long chain fatty acyl CoA synthetase 
               
               
                   
                   
                   
                   
                 2 (LACS2) mRNA, complete cds. [AF099740] 
               
               
                 0.993781093 
                 1.011152081 
                 1.0132569 
                 ACSL6 
                   Homo sapiens  acyl-CoA synthetase long-chain 
               
               
                   
                   
                   
                   
                 family member 6 (ACSL6), transcript variant 2, 
               
               
                   
                   
                   
                   
                 mRNA [NM_001009185] 
               
               
                 1.019597683 
                 1.136816973 
                 1.034547582 
                 ACSM1 
                   Homo sapiens  acyl-CoA synthetase medium-chain 
               
               
                   
                   
                   
                   
                 family member 1 (ACSM1), mRNA [NM_052956] 
               
               
                 1.040300267 
                 1.143930973 
                 1.012554807 
                 ACSM2 
                   Homo sapiens  acyl-CoA synthetase medium-chain 
               
               
                   
                   
                   
                   
                 family member 2 (ACSM2), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, mRNA [NM_182617] 
               
               
                 0.914465089 
                 1.116512962 
                 1.088997015 
                 AGPAT1 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 1 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, alpha) (AGPAT1), transcript variant 
               
               
                   
                   
                   
                   
                 1, mRNA [NM_006411] 
               
               
                 1.141554707 
                 2.106722072 
                 1.94126894 
                 AGPAT2 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 2 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, beta) (AGPAT2), transcript variant 
               
               
                   
                   
                   
                   
                 1, mRNA [NM_006412] 
               
               
                 0.96996191 
                 1.048989328 
                 1.041021598 
                 AGPAT4 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 4 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, delta) (AGPAT4), mRNA 
               
               
                   
                   
                   
                   
                 [NM_020133] 
               
               
                 0.991029563 
                 1.009751298 
                 1.030968319 
                 AGPAT4 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 4 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, delta) (AGPAT4), mRNA 
               
               
                   
                   
                   
                   
                 [NM_020133] 
               
               
                 1.281647924 
                 1.170398641 
                 0.984866443 
                 AGPAT5 
                   Homo sapiens  1-acylglycerol-3-phosphate O- 
               
               
                   
                   
                   
                   
                 acyltransferase 5 (lysophosphatidic acid 
               
               
                   
                   
                   
                   
                 acyltransferase, epsilon) (AGPAT5), mRNA 
               
               
                   
                   
                   
                   
                 [NM_018361] 
               
               
                 1.048989328 
                 1.168777249 
                 1.130530567 
                 FAS 
                   Homo sapiens  Fas (TNF receptor superfamily, 
               
               
                   
                   
                   
                   
                 member 6) (FAS), transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_000043] 
               
               
                 1.082224645 
                 1.025267238 
                 1.039579435 
                 FASLG 
                   Homo sapiens  Fas ligand (TNF superfamily, 
               
               
                   
                   
                   
                   
                 member 6) (FASLG), mRNA [NM_000639] 
               
               
                 0.910038824 
                 1.21335356 
                 1.147902414 
                 FASTK 
                   Homo sapiens  Fas-activated serine/threonine 
               
               
                   
                   
                   
                   
                 kinase (FASTK), transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_006712] 
               
               
                 0.906890329 
                 1.181811547 
                 1.151887642 
                 FASTK 
                   Homo sapiens  Fas-activated serine/threonine 
               
               
                   
                   
                   
                   
                 kinase (FASTK), transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_006712] 
               
               
                 0.865136691 
                 1.23370717 
                 1.140763716 
                 FASTKD1 
                   Homo sapiens  FAST kinase domains 1 (FASTKD1), 
               
               
                   
                   
                   
                   
                 mRNA [NM_024622] 
               
               
                 1.037419937 
                 1.048989328 
                 1.030253954 
                 FASTKD1 
                   Homo sapiens  mRNA for KIAA1800 protein, partial 
               
               
                   
                   
                   
                   
                 cds. [AB058703] 
               
               
                 1.071030823 
                 0.908778116 
                 0.948026965 
                 FASTKD2 
                   Homo sapiens  FAST kinase domains 2 (FASTKD2), 
               
               
                   
                   
                   
                   
                 mRNA [NM_014929] 
               
               
                 1.078480432 
                 1.019597683 
                 1.337000495 
                 FASTKD5 
                   Homo sapiens  FAST kinase domains 5 (FASTKD5), 
               
               
                   
                   
                   
                   
                 mRNA [NM_021826] 
               
               
                 1.169587664 
                 1.29056249 
                 1.174461971 
                 HMGCR 
                   Homo sapiens  3-hydroxy-3-methylglutaryl- 
               
               
                   
                   
                   
                   
                 Coenzyme A reductase (HMGCR), mRNA 
               
               
                   
                   
                   
                   
                 [NM_000859] 
               
               
                 1.163120042 
                 1.199139914 
                 1.115739322 
                 HMGCS1 
                   Homo sapiens  3-hydroxy-3-methylglutaryl- 
               
               
                   
                   
                   
                   
                 Coenzyme A synthase 1 (soluble) (HMGCS1), 
               
               
                   
                   
                   
                   
                 mRNA [NM_002130] 
               
               
                 0.997922719 
                 0.996540263 
                 1.074004472 
                 HMGCS2 
                   Homo sapiens  3-hydroxy-3-methylglutaryl- 
               
               
                   
                   
                   
                   
                 Coenzyme A synthase 2 (mitochondrial) 
               
               
                   
                   
                   
                   
                 (HMGCS2), mRNA [NM_005518] 
               
               
                 1.062895674 
                 1.330529041 
                 1.170398641 
                 LEPROTL1 
                   Homo sapiens  leptin receptor overlapping 
               
               
                   
                   
                   
                   
                 transcript-like 1 (LEPROTL1), mRNA [NM_015344] 
               
               
                 0.763658749 
                 1.207480591 
                 1.182631 
                 LPIN1 
                   Homo sapiens  lipin 1 (LPIN1), mRNA [NM_145693] 
               
               
                 0.947370071 
                 1.096571589 
                 1.067325338 
                 LPIN2 
                   Homo sapiens  lipin 2 (LPIN2), mRNA [NM_014646] 
               
               
                 1.00695555 
                 1.237132479 
                 1.077733145 
                 LPIN3 
                   Homo sapiens  lipin 3 (LPIN3), mRNA [NM_022896] 
               
               
                 1.076986376 
                 1.131314463 
                 1.029540083 
                 PLIN 
                   Homo sapiens  perilipin (PLIN), mRNA [NM_002666] 
               
               
                 1.015366101 
                 0.996540263 
                 1.019597683 
                 SORBS1 
                   Homo sapiens  sorbin and SH3 domain containing 1 
               
               
                   
                   
                   
                   
                 (SORBS1), transcript variant 2, mRNA 
               
               
                   
                   
                   
                   
                 [NM_015385] 
               
               
                 0.942131274 
                 1.056285625 
                 0.948684315 
                 SORBS1 
                   Homo sapiens  cDNA FLJ12406 fis, clone 
               
               
                   
                   
                   
                   
                 MAMMA1002842, weakly similar to Mus musculus 
               
               
                   
                   
                   
                   
                 c-Cbl associated protein CAP mRNA. [AK022468] 
               
               
                 0.986232704 
                 1.014662547 
                 1.038859103 
                 UCP1 
                   Homo sapiens  uncoupling protein 1 (mitochondrial, 
               
               
                   
                   
                   
                   
                 proton carrier) (UCP1), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, mRNA [NM_021833] 
               
               
                 0.942131274 
                 0.921464186 
                 1.00765376 
                 UCP3 
                   Homo sapiens  uncoupling protein 3 (mitochondrial, 
               
               
                   
                   
                   
                   
                 proton carrier) (UCP3), nuclear gene encoding 
               
               
                   
                   
                   
                   
                 mitochondrial protein, transcript variant long, mRNA 
               
               
                   
                   
                   
                   
                 [NM_003356] 
               
               
                 1.183451022 
                 1.575707772 
                 1.225185332 
                 VEGFA 
                   Homo sapiens  vascular endothelial growth factor A 
               
               
                   
                   
                   
                   
                 (VEGFA), transcript variant 1, mRNA 
               
               
                   
                   
                   
                   
                 [NM_001025366] 
               
               
                 0.942784536 
                 1.677136369 
                 1.447938172 
                 VEGFB 
                   Homo sapiens  vascular endothelial growth factor B 
               
               
                   
                   
                   
                   
                 (VEGFB), mRNA [NM_003377] 
               
               
                 1.011152081 
                 1.038139271 
                 1.082975046 
                 ABCA1 
                   Homo sapiens  ATP-binding cassette, sub-family A 
               
               
                   
                   
                   
                   
                 (ABC1), member 1 (ABCA1), mRNA [NM_005502] 
               
               
                   
               
             
          
         
       
     
     Example 4 
     Glyceollins Alter Gene Expression in Primate Mammary Tissue 
     TABLE 2 shows the number of significant up-regulated and down-regulated genes in mammary tissue comparing glyceollin-enriched soy protein isolate to normal soy protein isolate. The HADH gene, involved in fatty acid metabolism, was up-regulated with glyceollin treatment. Several genes involved with glycerolipid metabolism were up-regulated including GPD1, GPAM, AGPAT2, and GPAM. The PTGDS gene that is involved with arachidonic acid metabolism was up-regulated. Several genes involved with the ECM-receptor interaction were down regulated including ITGA8, SDC1, syndecan 1, and ITGA2. Up-regulated genes were ITGA7 and CD36. Several genes involved with the PPAR signaling pathway were up-regulated including LPL, PLIN, SORBS1, CD36, and DBI. Several genes involved with the insulin signaling pathway were up-regulated including PRKAR2B, SORBS1, and ACACB. 
     
       
         
               
               
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
               
               
             
           
               
                 TABLE 2 
               
               
                   
               
               
                   
                   
                 Grp1 
                 Grp1 
                 Grp2 
                 Grp2 
                   
                   
                 Gene 
               
               
                 Protein 
                 Gene ID 
                 Mean 
                 SEM 
                 Mean 
                 SEM 
                 Ratio 
                 Direction 
                 Identifier 
               
               
                   
               
             
             
               
                   
               
             
          
           
               
                 Fatty acid metabolism 
               
             
          
           
               
                 Hydroxyacyl-Coenzyme A 
                 HADH 
                 9.38 
                 0.12 
                 10.12 
                 0.11 
                 1.66 
                 Up 
                 AF001903 
               
               
                 dehydrogenase 
               
               
                 Hydroxyacyl-Coenzyme A 
                 HADH 
                 8.64 
                 0.13 
                 9.33 
                 0.12 
                 1.62 
                 Up 
                 BC000306 
               
               
                 dehydrogenase 
               
               
                 Acetyl-Coenzyme A 
                 ACAT1 
                 9.8 
                 0.07 
                 10.37 
                 0.04 
                 1.49 
                 Up 
                 NM_000019 
               
               
                 acetyltransferase 1 (acetoacetyl 
               
               
                 Coenzyme A thiolase) 
               
               
                 Hydroxyacyl-Coenzyme A 
                 HADH 
                 9.55 
                 0.08 
                 10.12 
                 0.13 
                 1.49 
                 Up 
                 NM_005327 
               
               
                 dehydrogenase 
               
               
                 Aldehyde dehydrogenase 3 
                 ALDH3A2 
                 8.02 
                 0.02 
                 8.4 
                 0.07 
                 1.31 
                 Up 
                 L47162 
               
               
                 family, member A2 
               
               
                 Hydroxyacyl-Coenzyme A 
                 HADHB 
                 8.92 
                 0.04 
                 9.26 
                 0.08 
                 1.27 
                 Up 
                 NM_000183 
               
               
                 dehydrogenase/3-ketoacyl- 
               
               
                 Coenzyme A thiolase/enoyl- 
               
               
                 Coenzyme A hydratase 
               
               
                 (trifunctional protein), beta 
               
               
                 Hydroxyacyl-Coenzyme A 
                 HADHA 
                 5.46 
                 0.09 
                 5.79 
                 0.09 
                 1.26 
                 Up 
                 BG472176 
               
               
                 dehydrogenase/3-ketoacyl- 
               
               
                 Coenzyme A thiolase/enoyl- 
               
               
                 Coenzyme A hydratase 
               
               
                 (trifunctional protein), alpha 
               
             
          
           
               
                 Glycerolipid metabolism 
               
             
          
           
               
                 Glycerol-3-phosphate 
                 GPD1 
                 8.68 
                 0.26 
                 9.82 
                 0.2 
                 2.2 
                 Up 
                 NM_005276 
               
               
                 dehydrogenase 1 (soluble) 
               
               
                 Glycerol-3-phosphate 
                 GPAM 
                 8.9 
                 0.2 
                 10.03 
                 0.36 
                 2.18 
                 Up 
                 AV699379 
               
               
                 acyltransferase, mitochondrial 
               
               
                 1-acylglycerol-3-phosphate O- 
                 AGPAT2 
                 8.14 
                 0.16 
                 9.18 
                 0.26 
                 2.05 
                 Up 
                 U56418 
               
               
                 acyltransferase 2 
               
               
                 (lysophosphatidic acid 
               
               
                 acyltransferase, beta) 
               
               
                 Glycerol-3-phosphate 
                 GPAM 
                 9.58 
                 0.21 
                 10.58 
                 0.3 
                 2 
                 Up 
                 AB046780 
               
               
                 acyltransferase, mitochondrial 
               
               
                 Glycerol-3-phosphate 
                 GPD1 
                 8.53 
                 0.22 
                 9.43 
                 0.28 
                 1.87 
                 Up 
                 AI368018 
               
               
                 dehydrogenase 1 (soluble) 
               
               
                 Choline phosphotransferase 1 
                 CHPT1 
                 8.67 
                 0.12 
                 9.06 
                 0.11 
                 1.31 
                 Up 
                 AF195624 
               
               
                 Patatin-like phospholipase 
                 PNPLA3 
                 4.45 
                 0.1 
                 4.83 
                 0.1 
                 1.3 
                 Up 
                 AK025665 
               
               
                 domain containing 3 
               
               
                 Phospholipase A2, group III 
                 PLA2G3 
                 4.55 
                 0.06 
                 4.89 
                 0.07 
                 1.27 
                 Up 
                 NM_015715 
               
             
          
           
               
                 Arachidonic acid metabolism 
               
             
          
           
               
                 Prostaglandin D2 synthase 
                 PTGDS 
                 10.95 
                 0.29 
                 12.02 
                 0.18 
                 2.11 
                 Up 
                 NM_000954 
               
               
                 21 kDa (brain) 
               
               
                 Prostaglandin D2 synthase 
                 PTGDS 
                 11.05 
                 0.25 
                 12.03 
                 0.12 
                 1.96 
                 Up 
                 BC005939 
               
               
                 21 kDa (brain) 
               
               
                 Phospholipase A2, group III 
                 PLA2G3 
                 4.55 
                 0.06 
                 4.89 
                 0.07 
                 1.27 
                 Up 
                 NM_015715 
               
             
          
           
               
                 ECM-receptor interaction 
               
             
          
           
               
                 Integrin, alpha 8 
                 ITGA8 
                 6.54 
                 0.33 
                 5.38 
                 0.19 
                 2.24 
                 Down 
                 AI193623 
               
               
                 Syndecan 1 
                 SDC1 
                 8 
                 0.19 
                 7.16 
                 0.13 
                 1.8 
                 Down 
                 NM_002997 
               
               
                 Syndecan 1 
                 SDC1 
                 8.69 
                 0.17 
                 7.94 
                 0.18 
                 1.68 
                 Down 
                 NM_002997 
               
               
                 Integrin, alpha 7 
                 ITGA7 
                 8.5 
                 0.07 
                 9.23 
                 0.25 
                 1.65 
                 Up 
                 AK022548 
               
               
                 syndecan 1 
                 SDC1 
                 7.28 
                 0.21 
                 6.58 
                 0.1 
                 1.63 
                 Down 
                 Z48199 
               
               
                 Integrin, alpha 7 
                 ITGA7 
                 7.4 
                 0.03 
                 8.06 
                 0.24 
                 1.59 
                 Up 
                 AF072132 
               
               
                 Integrin, alpha 2 (CD49B, alpha 
                 ITGA2 
                 7.81 
                 0.06 
                 7.19 
                 0.15 
                 1.54 
                 Down 
                 N95414 
               
               
                 2 subunit of VLA-2 receptor) 
               
               
                 CD36 molecule 
                 CD36 
                 11.09 
                 0.13 
                 11.71 
                 0.18 
                 1.53 
                 Up 
                 NM_000072 
               
               
                 (thrombospondin receptor) 
               
             
          
           
               
                 PPAR signaling pathway 
               
             
          
           
               
                 Lipoprotein lipase 
                 LPL 
                 11.21 
                 0.18 
                 12.15 
                 0.2 
                 1.91 
                 Up 
                 BF672975 
               
               
                 Perilipin 
                 PLIN 
                 11.03 
                 0.07 
                 11.8 
                 0.24 
                 1.7 
                 Up 
                 NM_002666 
               
               
                 Sorbin and SH3 domain 
                 SORBS1 
                 7.89 
                 0.08 
                 8.58 
                 0.27 
                 1.61 
                 Up 
                 N21458 
               
               
                 containing 1 
               
               
                 Sorbin and SH3 domain 
                 SORBS1 
                 8.97 
                 0.06 
                 9.63 
                 0.13 
                 1.58 
                 Up 
                 NM_015385 
               
               
                 containing 1 
               
               
                 CD36 molecule 
                 CD36 
                 11.09 
                 0.13 
                 11.71 
                 0.18 
                 1.53 
                 Up 
                 NM_000072 
               
               
                 (thrombospondin receptor) 
               
               
                 Diazepam binding inhibitor 
                 DBI 
                 11.27 
                 0.11 
                 11.85 
                 0.16 
                 1.5 
                 Up 
                 BC006466 
               
               
                 (GABA receptor modulator, acyl- 
               
               
                 Coenzyme A binding protein) 
               
               
                 Diazepam binding inhibitor 
                 DBI 
                 11.34 
                 0.06 
                 11.9 
                 0.16 
                 1.48 
                 Up 
                 M15887 
               
               
                 (GABA receptor modulator, acyl- 
               
               
                 Coenzyme A binding protein) 
               
               
                 CD36 molecule 
                 CD36 
                 11.85 
                 0.12 
                 12.33 
                 0.15 
                 1.4 
                 Up 
                 M98399 
               
               
                 (thrombospondin receptor) 
               
               
                 Oxidized low density lipoprotein 
                 OLR1 
                 4.4 
                 0.04 
                 4.13 
                 0.1 
                 1.2 
                 Down 
                 AF035776 
               
               
                 (lectin-like) receptor 1 
               
             
          
           
               
                 Insulin signaling pathway 
               
             
          
           
               
                 Protein kinase, cAMP- 
                 PRKAR2B 
                 9.07 
                 0.16 
                 9.9 
                 0.28 
                 1.77 
                 Up 
                 NM_002736 
               
               
                 dependent, regulatory, type II, 
               
               
                 beta 
               
               
                 Sorbin and SH3 domain 
                 SORBS1 
                 7.89 
                 0.08 
                 8.58 
                 0.27 
                 1.61 
                 Up 
                 N21458 
               
               
                 containing 1 
               
               
                 Acetyl-Coenzyme A carboxylase 
                 ACACB 
                 7.75 
                 0.22 
                 8.43 
                 0.16 
                 1.61 
                 Up 
                 R99037 
               
               
                 beta 
               
               
                 Sorbin and SH3 domain 
                 SORBS1 
                 8.97 
                 0.06 
                 9.63 
                 0.13 
                 1.58 
                 Up 
                 NM_015385 
               
               
                 containing 1 
               
               
                 Acetyl-Coenzyme A carboxylase 
                 ACACB 
                 7.32 
                 0.15 
                 7.97 
                 0.11 
                 1.56 
                 Up 
                 NM_001093 
               
               
                 beta 
               
               
                 Acetyl-Coenzyme A carboxylase 
                 ACACB 
                 9.32 
                 0.15 
                 9.89 
                 0.17 
                 1.49 
                 Up 
                 AI057637 
               
               
                 beta 
               
               
                 Protein kinase, AMP-activated, 
                 PRKAB1 
                 6.7 
                 0.14 
                 7.1 
                 0.08 
                 1.32 
                 Up 
                 NM_006253 
               
               
                 beta 1 non-catalytic subunit 
               
               
                 Protein kinase, AMP-activated, 
                 PRKAB2 
                 4.43 
                 0.08 
                 4.8 
                 0.08 
                 1.28 
                 Up 
                 NM_005399 
               
               
                 beta 2 non-catalytic subunit 
               
               
                 Sterol regulatory element 
                 SREBF1 
                 9.1 
                 0.1 
                 9.43 
                 0.07 
                 1.26 
                 Up 
                 NM_004176 
               
               
                 binding transcription factor 1 
               
               
                 Protein kinase, cAMP- 
                 PRKAR2A 
                 6.12 
                 0.07 
                 6.44 
                 0.1 
                 1.25 
                 Up 
                 BC002763 
               
               
                 dependent, regulatory, type II, 
               
               
                 alpha 
               
               
                 Protein kinase C, iota 
                 PRKCI 
                 7.4 
                 0.03 
                 7.12 
                 0.08 
                 1.21 
                 Down 
                 L18964 
               
               
                 Ras homolog enriched in brain 
                 RHEB 
                 8.23 
                 0.06 
                 8.5 
                 0.02 
                 1.21 
                 Up 
                 AF493921 
               
               
                   
               
             
          
         
       
     
     Example 5 
     Glyceollins Alter Gene Expression in Mouse Liver Tissue 
     TABLE 3 shows gene expression in liver tissue treated with glyceollins, TABLE 4 shows the number of significant up-regulated (&gt;1.5), and TABLE 5 shows the number of significant down-regulated (&lt;1.5) genes glyceollin treated mouse liver tissue with glyceollins compared to controls. 
     As can be appreciated from TABLES 3, 4, and 5, treatment with glyceollins caused significant changes in gene expression. A total of 13 genes were up-regulated and 13 genes were down-regulated with glyceollin treatment. In this study the lipid metabolism gene ACOX1 was significantly up-regulated. The up-regulation of this gene may be performed in the liver to prevent excess lipid accumulation. Also, up-regulation of the AHSG and LEP genes alters regulation of body fat and insulin sensitivity. 
     
       
         
               
               
               
               
             
               
               
               
               
               
               
               
               
               
               
               
               
             
               
               
               
               
               
               
               
               
               
               
               
               
             
           
               
                 TABLE 3 
               
             
             
               
                   
               
               
                 RefSeq 
                 Group 1 
                 Group 2 
                 Group2/ 
               
             
          
           
               
                 Number 
                 Symbol 
                 Description 
                 C1 
                 C2 
                 C3 
                 Avg 
                 TR1 
                 TR2 
                 TR3 
                 Avg 
                 Group 1 
               
               
                   
               
             
          
           
               
                 NM_008084 
                 Gapdh 
                 Glyceraldehyde-3- 
                 26.18 
                 16.7 
                 49.09 
                 30.66 
                 85.24 
                 47.24 
                 96.69 
                 76.39 
                 2.49 
               
               
                   
                   
                 phosphate 
               
               
                   
                   
                 dehydrogenase 
               
               
                 NM_133360 
                 Acaca 
                 Acetyl-Coenzyme A 
                 1.6 
                 0.97 
                 1.25 
                 1.27 
                 0.93 
                 1.56 
                 1.39 
                 1.29 
                 1.02 
               
               
                   
                   
                 carboxylase alpha 
               
               
                 NM_133904 
                 Acacb 
                 Acetyl-Coenzyme A 
                 0.41 
                 0.04 
                 0.31 
                 0.25 
                 0.31 
                 0.37 
                 0.33 
                 0.34 
                 1.35 
               
               
                   
                   
                 carboxylase beta 
               
               
                 NM_015729 
                 Acox1 
                 Acyl-Coenzyme A 
                 0.66 
                 0.44 
                 2.37 
                 1.16 
                 13.73 
                 2.16 
                 11.03 
                 8.97 
                 7.75 
               
               
                   
                   
                 oxidase 1, palmitoyl 
               
               
                 NM_013459 
                 Cfd 
                 Complement factor D 
                 0.41 
                 0 
                 0.16 
                 0.19 
                 0.3 
                 0.35 
                 0.39 
                 0.35 
                 1.83 
               
               
                   
                   
                 (adipsin) 
               
               
                 NM_013460 
                 Adra1d 
                 Adrenergic receptor, alpha 1d 
                 0.54 
                 0.13 
                 0.36 
                 0.34 
                 0.33 
                 0.5 
                 0.5 
                 0.44 
                 1.28 
               
               
                 NM_009636 
                 Aebp1 
                 AE binding protein 1 
                 10.45 
                 8.23 
                 5.53 
                 8.07 
                 3.95 
                 9.38 
                 6.25 
                 6.53 
                 0.81 
               
               
                 NM_013465 
                 Ahsg 
                 Alpha-2-HS- 
                 2.45 
                 0.83 
                 2.64 
                 1.97 
                 53.11 
                 4.13 
                 42.04 
                 33.09 
                 16.76 
               
               
                   
                   
                 glycoprotein 
               
               
                 NM_009652 
                 Akt1 
                 Thymoma viral proto- 
                 0.42 
                 0.33 
                 0.66 
                 0.47 
                 1.03 
                 0.42 
                 0.98 
                 0.81 
                 1.72 
               
               
                   
                   
                 oncogene 1 
               
               
                 NM_007434 
                 Akt2 
                 Thymoma viral proto- 
                 0.39 
                 0.21 
                 0.59 
                 0.4 
                 0.66 
                 0.27 
                 0.61 
                 0.51 
                 1.3 
               
               
                   
                   
                 oncogene 2 
               
               
                 NM_011785 
                 Akt3 
                 Thymoma viral proto- 
                 1.09 
                 0.9 
                 0.91 
                 0.96 
                 0.62 
                 1.16 
                 0.8 
                 0.86 
                 0.89 
               
               
                   
                   
                 oncogene 3 
               
               
                 NM_009703 
                 Araf 
                 V-raf murine sarcoma 
                 19.26 
                 15.7 
                 13.41 
                 16.12 
                 7.92 
                 23.37 
                 13.14 
                 14.81 
                 0.92 
               
               
                   
                   
                 3611 viral oncogene 
               
               
                   
                   
                 homolog 
               
               
                 NM_009743 
                 Bcl2l1 
                 Bcl2-like 1 
                 0.58 
                 0.32 
                 0.43 
                 0.45 
                 0.29 
                 0.37 
                 0.34 
                 0.34 
                 0.76 
               
               
                 NM_139294 
                 Braf 
                 Braf transforming 
                 0.26 
                 0.25 
                 0.3 
                 0.27 
                 0.3 
                 0.18 
                 0.28 
                 0.25 
                 0.94 
               
               
                   
                   
                 gene 
               
               
                 NM_007598 
                 Cap1 
                 CAP, adenylate 
                 0.63 
                 0.33 
                 0.49 
                 0.48 
                 0.49 
                 0.49 
                 0.49 
                 0.49 
                 1 
               
               
                   
                   
                 cyclase-associated 
               
               
                   
                   
                 protein 1 (yeast) 
               
               
                 NM_007619 
                 Cbl 
                 Casitas B-lineage 
                 12.53 
                 10.73 
                 8.16 
                 10.47 
                 6.04 
                 13.58 
                 8.43 
                 9.35 
                 0.89 
               
               
                   
                   
                 lymphoma 
               
               
                 NM_007678 
                 Cebpa 
                 CCAAT/enhancer 
                 8.55 
                 8.19 
                 8.13 
                 8.29 
                 4.53 
                 9.4 
                 6.46 
                 6.8 
                 0.82 
               
               
                   
                   
                 binding protein 
               
               
                   
                   
                 (C/EBP), alpha 
               
               
                 NM_009883 
                 Cebpb 
                 CCAAT/enhancer 
                 1.23 
                 0.91 
                 1.15 
                 1.1 
                 1.91 
                 0.83 
                 1.6 
                 1.44 
                 1.31 
               
               
                   
                   
                 binding protein 
               
               
                   
                   
                 (C/EBP), beta 
               
               
                 NM_007679 
                 Cebpd 
                 CCAAT/enhancer 
                 8.07 
                 6.7 
                 5.38 
                 6.72 
                 3.57 
                 7.72 
                 5.32 
                 5.53 
                 0.82 
               
               
                   
                   
                 binding protein 
               
               
                   
                   
                 (C/EBP), delta 
               
               
                 NM_133656 
                 Crk 
                 V-crk sarcoma virus 
                 0.82 
                 0.6 
                 0.6 
                 0.68 
                 0.35 
                 0.31 
                 0.3 
                 0.32 
                 0.48 
               
               
                   
                   
                 CT10 oncogene 
               
               
                   
                   
                 homolog (avian) 
               
               
                 NM_009972 
                 Csn2 
                 Casein beta 
                 8.22 
                 7.2 
                 5.4 
                 6.94 
                 4.37 
                 9.3 
                 5.64 
                 6.44 
                 0.93 
               
               
                 NM_010070 
                 Dok1 
                 Docking protein 1 
                 0.45 
                 0.32 
                 0.28 
                 0.35 
                 0.6 
                 0.03 
                 0.13 
                 0.26 
                 0.73 
               
               
                 NM_010071 
                 Dok2 
                 Docking protein 2 
                 11.32 
                 6.49 
                 5.91 
                 7.91 
                 4.77 
                 7.39 
                 6.67 
                 6.28 
                 0.79 
               
               
                 NM_013739 
                 Dok3 
                 Docking protein 3 
                 4.05 
                 2.27 
                 2.23 
                 2.85 
                 1.9 
                 2.28 
                 2.25 
                 2.14 
                 0.75 
               
               
                 NM_053246 
                 Dok4 
                 Docking protein 4 
                 0.18 
                 0.3 
                 0.5 
                 0.33 
                 0.24 
                 0.02 
                 0.19 
                 0.15 
                 0.47 
               
               
                 NM_029761 
                 Dok5 
                 Docking protein 5 
                 0.27 
                 0.14 
                 0.16 
                 0.19 
                 0.15 
                 0.07 
                 0.12 
                 0.11 
                 0.59 
               
               
                 NM_019819 
                 Dusp14 
                 Dual specificity 
                 0.39 
                 0.25 
                 0.21 
                 0.28 
                 0.24 
                 0.05 
                 0.1 
                 0.13 
                 0.46 
               
               
                   
                   
                 phosphatase 14 
               
               
                 NM_145371 
                 Eif2b1 
                 Eukaryotic translation 
                 1.08 
                 0.82 
                 0.76 
                 0.88 
                 0.94 
                 0.86 
                 0.75 
                 0.85 
                 0.96 
               
               
                   
                   
                 initiation factor 2B, 
               
               
                   
                   
                 subunit 1 (alpha) 
               
               
                 NM_007917 
                 Eif4e 
                 Eukaryotic translation 
                 90.31 
                 86.51 
                 59.24 
                 78.69 
                 41.55 
                 91.44 
                 64.42 
                 65.8 
                 0.84 
               
               
                   
                   
                 initiation factor 4E 
               
               
                 NM_007918 
                 Eif4ebp1 
                 Eukaryotic translation 
                 0.69 
                 0.49 
                 0.4 
                 0.53 
                 0.56 
                 0.43 
                 0.45 
                 0.48 
                 0.91 
               
               
                   
                   
                 initiation factor 4E 
               
               
                   
                   
                 binding protein 1 
               
               
                 NM_007948 
                 Ercc1 
                 Excision repair cross- 
                 0.66 
                 0.61 
                 0.31 
                 0.52 
                 0.47 
                 0.26 
                 0.45 
                 0.4 
                 0.76 
               
               
                   
                   
                 complementing 
               
               
                   
                   
                 rodent repair 
               
               
                   
                   
                 deficiency, 
               
               
                   
                   
                 complementation 
               
               
                   
                   
                 group 1 
               
               
                 NM_007988 
                 Fasn 
                 Fatty acid synthase 
                 0.42 
                 0.12 
                 0.16 
                 0.23 
                 0.26 
                 0 
                 0.36 
                 0.21 
                 0.89 
               
               
                 NM_019395 
                 Fbp1 
                 Fructose 
                 0.38 
                 0.42 
                 0.57 
                 0.46 
                 2.7 
                 0.27 
                 2.03 
                 1.67 
                 3.66 
               
               
                   
                   
                 bisphosphatase 1 
               
               
                 NM_010234 
                 Fos 
                 FBJ osteosarcoma 
                 0.24 
                 0.25 
                 0.22 
                 0.23 
                 0.22 
                 0.23 
                 0.17 
                 0.21 
                 0.9 
               
               
                   
                   
                 oncogene 
               
               
                 NM_020009 
                 Frap1 
                 FK506 binding protein 
                 0.32 
                 0.27 
                 0.34 
                 0.31 
                 0.52 
                 0.24 
                 0.35 
                 0.37 
                 1.21 
               
               
                   
                   
                 12-rapamycin 
               
               
                   
                   
                 associated protein 1 
               
               
                 NM_177798 
                 Frs2 
                 Fibroblast growth 
                 0.68 
                 0.51 
                 0.52 
                 0.57 
                 0.9 
                 0.58 
                 0.9 
                 0.79 
                 1.39 
               
               
                   
                   
                 factor receptor 
               
               
                   
                   
                 substrate 2 
               
               
                 NM_144939 
                 Frs3 
                 Fibroblast growth 
                 3.24 
                 2.9 
                 2 
                 2.72 
                 2.06 
                 3.07 
                 2.28 
                 2.47 
                 0.91 
               
               
                   
                   
                 factor receptor 
               
               
                   
                   
                 substrate 3 
               
               
                 NM_008061 
                 G6pc 
                 Glucose-6- 
                 6 
                 4.78 
                 3.43 
                 4.73 
                 3.64 
                 6.3 
                 3.55 
                 4.5 
                 0.95 
               
               
                   
                   
                 phosphatase, 
               
               
                   
                   
                 catalytic 
               
               
                 NM_021331 
                 G6pc2 
                 Glucose-6- 
                 0.39 
                 0.27 
                 0.15 
                 0.27 
                 0.28 
                 0.01 
                 0.08 
                 0.12 
                 0.46 
               
               
                   
                   
                 phosphatase, 
               
               
                   
                   
                 catalytic, 2 
               
               
                 NM_019468 
                 G6pd2 
                 Glucose-6-phosphate 
                 0.47 
                 0.2 
                 0.15 
                 0.28 
                 0.32 
                 0.05 
                 0.23 
                 0.2 
                 0.72 
               
               
                   
                   
                 dehydrogenase 2 
               
               
                 NM_008062 
                 G6pdx 
                 Glucose-6-phosphate 
                 0.61 
                 0.81 
                 1.77 
                 1.06 
                 1.05 
                 1.27 
                 0.97 
                 1.09 
                 1.03 
               
               
                   
                   
                 dehydrogenase X- 
               
               
                   
                   
                 linked 
               
               
                 NM_021356 
                 Gab1 
                 Growth factor 
                 0.58 
                 0.96 
                 1.26 
                 0.93 
                 0.78 
                 0.8 
                 0.66 
                 0.75 
                 0.8 
               
               
                   
                   
                 receptor bound 
               
               
                   
                   
                 protein 2-associated 
               
               
                   
                   
                 protein 1 
               
               
                 NM_008100 
                 Gcg 
                 Glucagon 
                 2.09 
                 2.56 
                 2.36 
                 2.34 
                 1.94 
                 2.34 
                 1.92 
                 2.07 
                 0.88 
               
               
                 NM_010292 
                 Gck 
                 Glucokinase 
                 164.43 
                 154.99 
                 118.53 
                 145.99 
                 84.14 
                 158.53 
                 131.53 
                 124.73 
                 0.85 
               
               
                 NM_010271 
                 Gpd1 
                 Glycerol-3-phosphate 
                 0.73 
                 0.5 
                 0.36 
                 0.53 
                 0.77 
                 0.7 
                 0.43 
                 0.63 
                 1.19 
               
               
                   
                   
                 dehydrogenase 1 
               
               
                   
                   
                 (soluble) 
               
               
                 NM_010274 
                 Gpd2 
                 Glycerol phosphate 
                 11.64 
                 9.39 
                 7.32 
                 9.45 
                 7.91 
                 12.84 
                 9.57 
                 10.11 
                 1.07 
               
               
                   
                   
                 dehydrogenase 2, 
               
               
                   
                   
                 mitochondrial 
               
               
                 NM_010345 
                 Grb10 
                 Growth factor 
                 1.96 
                 1.49 
                 1.29 
                 1.58 
                 1.86 
                 1.82 
                 1.48 
                 1.72 
                 1.09 
               
               
                   
                   
                 receptor bound 
               
               
                   
                   
                 protein 10 
               
               
                 NM_008163 
                 Grb2 
                 Growth factor 
                 3.86 
                 2.17 
                 4.57 
                 3.53 
                 2.62 
                 2.77 
                 2.62 
                 2.67 
                 0.76 
               
               
                   
                   
                 receptor bound 
               
               
                   
                   
                 protein 2 
               
               
                 NM_019827 
                 Gsk3b 
                 Glycogen synthase 
                 7.19 
                 7.75 
                 7.91 
                 7.62 
                 5.8 
                 9.85 
                 8.38 
                 8.01 
                 1.05 
               
               
                   
                   
                 kinase 3 beta 
               
               
                 NM_013820 
                 Hk2 
                 Hexokinase 2 
                 0.23 
                 0.34 
                 0.26 
                 0.28 
                 0.55 
                 0.24 
                 0.22 
                 0.34 
                 1.21 
               
               
                 NM_008284 
                 Hras1 
                 Harvey rat sarcoma 
                 0.5 
                 0.82 
                 0.75 
                 0.69 
                 0.92 
                 0.62 
                 0.85 
                 0.8 
                 1.15 
               
               
                   
                   
                 virus oncogene 1 
               
               
                 NM_010513 
                 Igf1r 
                 Insulin-like growth 
                 1.17 
                 0.95 
                 1 
                 1.04 
                 0.79 
                 0.95 
                 0.86 
                 0.87 
                 0.84 
               
               
                   
                   
                 factor I receptor 
               
               
                 NM_010514 
                 Igf2 
                 Insulin-like growth 
                 2.1 
                 1.92 
                 1.75 
                 1.92 
                 2 
                 2.83 
                 2.06 
                 2.3 
                 1.2 
               
               
                   
                   
                 factor 2 
               
               
                 NM_008341 
                 Igfbp1 
                 Insulin-like growth 
                 8.49 
                 7.6 
                 6.52 
                 7.54 
                 6.67 
                 11.26 
                 8.89 
                 8.94 
                 1.19 
               
               
                   
                   
                 factor binding protein 1 
               
               
                 NM_008386 
                 Ins1 
                 Insulin I 
                 1.78 
                 1.54 
                 1.47 
                 1.6 
                 1.56 
                 1.94 
                 1.52 
                 1.67 
                 1.05 
               
               
                 NM_013564 
                 Insl3 
                 Insulin-like 3 
                 0.58 
                 0.53 
                 0.37 
                 0.49 
                 0.99 
                 0.57 
                 0.86 
                 0.81 
                 1.64 
               
               
                 NM_010568 
                 Insr 
                 Insulin receptor 
                 0.1 
                 0.22 
                 0.14 
                 0.15 
                 0.57 
                 0.3 
                 0.57 
                 0.48 
                 3.13 
               
               
                 NM_010570 
                 Irs1 
                 Insulin receptor 
                 0.54 
                 1.05 
                 0.87 
                 0.82 
                 1.02 
                 1.31 
                 0.96 
                 1.1 
                 1.33 
               
               
                   
                   
                 substrate 1 
               
               
                 XM_357863 
                 Irs2 
                 Insulin receptor 
                 0 
                 0.09 
                 0.26 
                 0.12 
                 0.33 
                 0.11 
                 0.53 
                 0.33 
                 2.77 
               
               
                   
                   
                 substrate 2 
               
               
                 NM_010572 
                 Irs4 
                 Insulin receptor 
                 0.1 
                 0.31 
                 0.09 
                 0.17 
                 0.24 
                 0.05 
                 0.25 
                 0.18 
                 1.08 
               
               
                   
                   
                 substrate 4 
               
               
                 NM_010591 
                 Jun 
                 Jun oncogene 
                 0.13 
                 0.18 
                 0.18 
                 0.16 
                 0.47 
                 0.23 
                 0.41 
                 0.37 
                 2.24 
               
               
                 NM_021284 
                 Kras 
                 V-Ki-ras2 Kirsten rat 
                 0.28 
                 0.31 
                 0.24 
                 0.28 
                 0.72 
                 0.31 
                 0.91 
                 0.65 
                 2.35 
               
               
                   
                   
                 sarcoma viral 
               
               
                   
                   
                 oncogene homolog 
               
               
                 NM_010700 
                 Ldlr 
                 Low density 
                 7.86 
                 6.85 
                 6.38 
                 7.03 
                 5.91 
                 10.64 
                 7.16 
                 7.9 
                 1.12 
               
               
                   
                   
                 lipoprotein receptor 
               
               
                 NM_008493 
                 Lep 
                 Leptin 
                 0.24 
                 0.22 
                 0 
                 0.15 
                 0.5 
                 0.33 
                 0.86 
                 0.57 
                 3.71 
               
               
                 NM_008927 
                 Map2k1 
                 Mitogen activated 
                 0.34 
                 0.34 
                 0.38 
                 0.35 
                 0.32 
                 0.19 
                 0.37 
                 0.29 
                 0.82 
               
               
                   
                   
                 protein kinase kinase 1 
               
               
                 NM_023138 
                 Map2k2 
                 Mitogen activated 
                 0.4 
                 0.45 
                 0.45 
                 0.43 
                 0.42 
                 0.4 
                 0.38 
                 0.4 
                 0.93 
               
               
                   
                   
                 protein kinase kinase 2 
               
               
                 NM_011949 
                 Mapk1 
                 Mitogen activated 
                 0.34 
                 0.32 
                 0.37 
                 0.34 
                 0.32 
                 0.32 
                 0.32 
                 0.32 
                 0.94 
               
               
                   
                   
                 protein kinase 1 
               
               
                 NM_021461 
                 Mknk1 
                 MAP kinase- 
                 1.66 
                 1.62 
                 1.77 
                 1.69 
                 1.46 
                 2.25 
                 1.97 
                 1.89 
                 1.12 
               
               
                   
                   
                 interacting 
               
               
                   
                   
                 serine/threonine 
               
               
                   
                   
                 kinase 1 
               
               
                 NM_010878 
                 Nck1 
                 Non-catalytic region 
                 0.2 
                 0.58 
                 0.28 
                 0.35 
                 0.59 
                 0.09 
                 0.29 
                 0.32 
                 0.91 
               
               
                   
                   
                 of tyrosine kinase 
               
               
                   
                   
                 adaptor protein 1 
               
               
                 NM_010879 
                 Nck2 
                 Non-catalytic region 
                 2.56 
                 2.5 
                 3.83 
                 2.96 
                 2.5 
                 4.47 
                 2.79 
                 3.25 
                 1.1 
               
               
                   
                   
                 of tyrosine kinase 
               
               
                   
                   
                 adaptor protein 2 
               
               
                 NM_010927 
                 Nos2 
                 Nitric oxide synthase 
                 17.52 
                 16.47 
                 13.84 
                 15.94 
                 9.88 
                 23.63 
                 14.88 
                 16.13 
                 1.01 
               
               
                   
                   
                 2, inducible, 
               
               
                   
                   
                 macrophage 
               
               
                 NM_023456 
                 Npy 
                 Neuropeptide Y 
                 17.78 
                 13.21 
                 12.68 
                 14.56 
                 7.92 
                 22 
                 10.06 
                 13.33 
                 0.92 
               
               
                 NM_008768 
                 Orm1 
                 Orosomucoid 1 
                 0.28 
                 0.3 
                 0.45 
                 0.34 
                 0.05 
                 0.16 
                 0.27 
                 0.16 
                 0.47 
               
               
                 NM_028994 
                 Pck2 
                 Phosphoenolpyruvate 
                 0.45 
                 0.44 
                 0.86 
                 0.58 
                 0.17 
                 0.31 
                 0.36 
                 0.28 
                 0.48 
               
               
                   
                   
                 carboxykinase 2 
               
               
                   
                   
                 (mitochondrial) 
               
               
                 NM_011062 
                 Pdpk1 
                 3-phosphoinositide 
                 0.18 
                 0.12 
                 0.45 
                 0.25 
                 0.13 
                 0.03 
                 0.12 
                 0.09 
                 0.38 
               
               
                   
                   
                 dependent protein 
               
               
                   
                   
                 kinase-1 
               
               
                 XM_358384 
                 Phip 
                 Pleckstrin homology 
                 1.32 
                 1.1 
                 1.32 
                 1.25 
                 1.27 
                 1.71 
                 1.47 
                 1.48 
                 1.19 
               
               
                   
                   
                 domain interacting 
               
               
                   
                   
                 protein 
               
               
                 NM_008839 
                 Pik3ca 
                 Phosphatidylinositol 
                 3.75 
                 4.3 
                 3.69 
                 3.91 
                 1.94 
                 4.21 
                 3.6 
                 3.25 
                 0.83 
               
               
                   
                   
                 3-kinase, catalytic, 
               
               
                   
                   
                 alpha polypeptide 
               
               
                 NM_029094 
                 Pik3cb 
                 Phosphatidylinositol 
                 0.32 
                 0.65 
                 0.45 
                 0.47 
                 0.77 
                 0.28 
                 0.27 
                 0.44 
                 0.94 
               
               
                   
                   
                 3-kinase, catalytic, 
               
               
                   
                   
                 beta polypeptide 
               
               
                 NM_001024955 
                 Pik3r1 
                 Phosphatidylinositol 
                 1.15 
                 1.94 
                 0.87 
                 1.32 
                 1.39 
                 1.25 
                 0.94 
                 1.19 
                 0.9 
               
               
                   
                   
                 3-kinase, regulatory 
               
               
                   
                   
                 subunit, polypeptide 1 
               
               
                   
                   
                 (p85 alpha) 
               
               
                 NM_008841 
                 Pik3r2 
                 Phosphatidylinositol 
                 2.26 
                 2.78 
                 2.21 
                 2.41 
                 2.28 
                 2.52 
                 1.49 
                 2.1 
                 0.87 
               
               
                   
                   
                 3-kinase, regulatory 
               
               
                   
                   
                 subunit, polypeptide 2 
               
               
                   
                   
                 (p85 beta) 
               
               
                 NM_181585 
                 Pik3r3 
                 Phosphatidylinositol 3 
                 0.38 
                 0.11 
                 0.34 
                 0.28 
                 0 
                 0.23 
                 0 
                 0.08 
                 0.27 
               
               
                   
                   
                 kinase, regulatory 
               
               
                   
                   
                 subunit, polypeptide 3 
               
               
                   
                   
                 (p55) 
               
               
                 NM_013631 
                 Pklr 
                 Pyruvate kinase liver 
                 0.48 
                 0.2 
                 0.49 
                 0.39 
                 0.11 
                 9.53 
                 0.13 
                 3.26 
                 8.35 
               
               
                   
                   
                 and red blood cell 
               
               
                 NM_011099 
                 Pkm2 
                 Pyruvate kinase, 
                 1 
                 0.77 
                 1.09 
                 0.95 
                 0.43 
                 1.08 
                 0.66 
                 0.72 
                 0.76 
               
               
                   
                   
                 muscle 
               
               
                 NM_011146 
                 Pparg 
                 Peroxisome 
                 2.59 
                 2.25 
                 2.13 
                 2.33 
                 1.01 
                 2.53 
                 2 
                 1.85 
                 0.79 
               
               
                   
                   
                 proliferator activated 
               
               
                   
                   
                 receptor gamma 
               
               
                 NM_031868 
                 Ppp1ca 
                 Protein phosphatase 
                 14.68 
                 11.81 
                 10.24 
                 12.25 
                 5.89 
                 16.04 
                 10.86 
                 10.93 
                 0.89 
               
               
                   
                   
                 1, catalytic subunit, 
               
               
                   
                   
                 alpha isoform 
               
               
                 NM_008855 
                 Prkcb1 
                 Protein kinase C, 
                 0.45 
                 0.6 
                 0.46 
                 0.5 
                 0.74 
                 0.16 
                 0.11 
                 0.34 
                 0.68 
               
               
                   
                   
                 beta 1 
               
               
                 NM_011102 
                 Prkcc 
                 Protein kinase C, 
                 0.61 
                 0.87 
                 0.6 
                 0.69 
                 0.82 
                 0.21 
                 0.48 
                 0.51 
                 0.73 
               
               
                   
                   
                 gamma 
               
               
                 NM_008857 
                 Prkci 
                 Protein kinase C, iota 
                 0.52 
                 1.09 
                 0.48 
                 0.7 
                 0.68 
                 0.22 
                 0.16 
                 0.35 
                 0.51 
               
               
                 NM_008860 
                 Prkcz 
                 Protein kinase C, zeta 
                 0.62 
                 0.44 
                 0.83 
                 0.63 
                 0.15 
                 0.38 
                 0.56 
                 0.36 
                 0.58 
               
               
                 NM_011164 
                 Prl 
                 Prolactin 
                 0.22 
                 0.06 
                 0.41 
                 0.23 
                 0.04 
                 0.13 
                 0.07 
                 0.08 
                 0.35 
               
               
                 NM_011201 
                 Ptpn1 
                 Protein tyrosine 
                 0.32 
                 0.01 
                 1.21 
                 0.51 
                 0.16 
                 0.68 
                 0.28 
                 0.37 
                 0.73 
               
               
                   
                   
                 phosphatase, non- 
               
               
                   
                   
                 receptor type 1 
               
               
                 NM_011202 
                 Ptpn11 
                 Protein tyrosine 
                 0.22 
                 0.03 
                 0.16 
                 0.14 
                 0.11 
                 0.01 
                 0.08 
                 0.07 
                 0.48 
               
               
                   
                   
                 phosphatase, non- 
               
               
                   
                   
                 receptor type 11 
               
               
                 NM_011213 
                 Ptprf 
                 Protein tyrosine 
                 2.78 
                 2.22 
                 1.83 
                 2.28 
                 1.44 
                 2.14 
                 2.05 
                 1.88 
                 0.82 
               
               
                   
                   
                 phosphatase, 
               
               
                   
                   
                 receptor type, F 
               
               
                 NM_029780 
                 Raf1 
                 V-raf-leukemia viral 
                 0.41 
                 0.23 
                 0.77 
                 0.47 
                 0.56 
                 2.31 
                 0.31 
                 1.06 
                 2.24 
               
               
                   
                   
                 oncogene 1 
               
               
                 NM_022984 
                 Retn 
                 Resistin 
                 1.88 
                 3.13 
                 2.11 
                 2.38 
                 2.09 
                 2.01 
                 1.96 
                 2.02 
                 0.85 
               
               
                 NM_009097 
                 Rps6ka1 
                 Ribosomal protein S6 
                 1.01 
                 2.2 
                 0.9 
                 1.37 
                 0.78 
                 0.87 
                 0.44 
                 0.69 
                 0.51 
               
               
                   
                   
                 kinase polypeptide 1 
               
               
                 NM_028259 
                 Rps6kb1 
                 Ribosomal protein S6 
                 19.72 
                 21.12 
                 16.6 
                 19.15 
                 7.79 
                 23.44 
                 16.35 
                 15.86 
                 0.83 
               
               
                   
                   
                 kinase, polypeptide 1 
               
               
                 NM_009101 
                 Rras 
                 Harvey rat sarcoma 
                 3.18 
                 3.31 
                 2.79 
                 3.09 
                 1.85 
                 4.43 
                 3.94 
                 3.41 
                 1.1 
               
               
                   
                   
                 oncogene, subgroup R 
               
               
                 NM_025846 
                 Rras2 
                 Related RAS viral (r- 
                 0.34 
                 0.1 
                 0.34 
                 0.26 
                 0.2 
                 0.15 
                 0.17 
                 0.18 
                 0.68 
               
               
                   
                   
                 ras) oncogene 
               
               
                   
                   
                 homolog 2 
               
               
                 NM_008871 
                 Serpine1 
                 Serine (or cysteine) 
                 0.21 
                 0.06 
                 0.2 
                 0.16 
                 0.25 
                 0.11 
                 0.53 
                 0.3 
                 1.89 
               
               
                   
                   
                 peptidase inhibitor, 
               
               
                   
                   
                 clade E, member 1 
               
               
                 NM_011368 
                 Shc1 
                 Src homology 2 
                 0.48 
                 0.34 
                 0.43 
                 0.41 
                 0.53 
                 0.23 
                 0.5 
                 0.42 
                 1.01 
               
               
                   
                   
                 domain-containing 
               
               
                   
                   
                 transforming protein 
               
               
                   
                   
                 C1 
               
               
                 NM_009167 
                 Shc3 
                 Src homology 2 
                 21.89 
                 18.99 
                 15.6 
                 18.82 
                 13.52 
                 24.38 
                 17.27 
                 18.39 
                 0.98 
               
               
                   
                   
                 domain-containing 
               
               
                   
                   
                 transforming protein 
               
               
                   
                   
                 C3 
               
               
                 NM_011989 
                 Slc27a4 
                 Solute carrier family 
                 159.81 
                 141.42 
                 124.02 
                 141.75 
                 81.12 
                 166.99 
                 98.4 
                 115.5 
                 0.81 
               
               
                   
                   
                 27 (fatty acid 
               
               
                   
                   
                 transporter), member 4 
               
               
                 NM_011400 
                 Slc2a1 
                 Solute carrier family 2 
                 0.65 
                 1.53 
                 0.44 
                 0.87 
                 0.62 
                 0.45 
                 0.32 
                 0.46 
                 0.53 
               
               
                   
                   
                 (facilitated glucose 
               
               
                   
                   
                 transporter), member 1 
               
               
                 NM_009204 
                 Slc2a4 
                 Solute carrier family 2 
                 0.46 
                 0.28 
                 0.47 
                 0.4 
                 0.2 
                 0.22 
                 0.17 
                 0.2 
                 0.49 
               
               
                   
                   
                 (facilitated glucose 
               
               
                   
                   
                 transporter), member 4 
               
               
                 NM_009166 
                 Sorbs1 
                 Sorbin and SH3 
                 0.69 
                 0.66 
                 1.08 
                 0.81 
                 1.34 
                 0.93 
                 1.19 
                 1.15 
                 1.42 
               
               
                   
                   
                 domain containing 1 
               
               
                 NM_009231 
                 Sos1 
                 Son of sevenless 
                 0.58 
                 0.67 
                 0.48 
                 0.57 
                 0.45 
                 0.29 
                 1.43 
                 0.72 
                 1.26 
               
               
                   
                   
                 homolog 1 
               
               
                   
                   
                 ( Drosophila ) 
               
               
                 XM_127051 
                 Sos2 
                 Son of sevenless 
                 0.63 
                 0.38 
                 0.43 
                 0.48 
                 0.55 
                 0.18 
                 0.35 
                 0.36 
                 0.75 
               
               
                   
                   
                 homolog 2 
               
               
                   
                   
                 ( Drosophila ) 
               
               
                 NM_011480 
                 Srebf1 
                 Sterol regulatory 
                 1.48 
                 1.05 
                 0.94 
                 1.16 
                 1.32 
                 0.87 
                 0.91 
                 1.03 
                 0.89 
               
               
                   
                   
                 element binding 
               
               
                   
                   
                 factor 1 
               
               
                 NM_009375 
                 Tg 
                 Thyroglobulin 
                 3.47 
                 0.77 
                 0.66 
                 1.64 
                 0.4 
                 0.37 
                 0.26 
                 0.34 
                 0.21 
               
               
                 NM_013692 
                 Klf10 
                 Kruppel-like factor 10 
                 1.09 
                 1.94 
                 0.76 
                 1.26 
                 0.81 
                 0.84 
                 0.7 
                 0.78 
                 0.62 
               
               
                 NM_009463 
                 Ucp1 
                 Uncoupling protein 1 
                 0.72 
                 1.22 
                 0.74 
                 0.89 
                 0.55 
                 0.29 
                 0.33 
                 0.39 
                 0.43 
               
               
                   
                   
                 (mitochondrial, proton 
               
               
                   
                   
                 carrier) 
               
               
                 NM_011671 
                 Ucp2 
                 Uncoupling protein 2 
                 0.37 
                 0.66 
                 0.91 
                 0.65 
                 0.32 
                 0.51 
                 0.31 
                 0.38 
                 0.58 
               
               
                   
                   
                 (mitochondrial, proton 
               
               
                   
                   
                 carrier) 
               
               
                 NM_009505 
                 Vegfa 
                 Vascular endothelial 
                 0.42 
                 0.42 
                 0.57 
                 0.47 
                 1.42 
                 1.04 
                 0.72 
                 1.06 
                 2.27 
               
               
                   
                   
                 growth factor A 
               
               
                 L08752 
                 PUC18 
                 PUC18 Plasmid DNA 
                 0.47 
                 0.88 
                 0.68 
                 0.68 
                 0.23 
                 0.48 
                 0.31 
                 0.34 
                 0.5 
               
               
                   
                 Blank 
                   
                 0.51 
                 0.93 
                 0.57 
                 0.67 
                 0.19 
                 0.07 
                 0.3 
                 0.18 
                 0.28 
               
               
                   
                 Blank 
                   
                 0.6 
                 1.19 
                 0.68 
                 0.82 
                 0.54 
                 0.11 
                 0.46 
                 0.37 
                 0.45 
               
               
                 SA_00005 
                 AS1R2 
                 Artificial Sequence 1 
                 0.66 
                 0.63 
                 0.72 
                 0.67 
                 0.31 
                 0.18 
                 0.65 
                 0.38 
                 0.57 
               
               
                   
                   
                 Related 2 (80% 
               
               
                   
                   
                 identity) (48/60) 
               
               
                 SA_00004 
                 AS1R1 
                 Artificial Sequence 1 
                 1.17 
                 1.26 
                 1.59 
                 1.34 
                 1.16 
                 0.86 
                 1.03 
                 1.02 
                 0.76 
               
               
                   
                   
                 Related 1 (90% 
               
               
                   
                   
                 identity) (54/60) 
               
               
                 SA_00003 
                 AS1 
                 Artificial Sequence 1 
                 1.98 
                 2.75 
                 3.71 
                 2.81 
                 2.72 
                 2.18 
                 2.72 
                 2.54 
                 0.9 
               
               
                 NM_024277 
                 Rps27a 
                 Ribosomal protein 
                 0.22 
                 0.24 
                 0.78 
                 0.41 
                 0.53 
                 0.2 
                 0.69 
                 0.48 
                 1.15 
               
               
                   
                   
                 S27a 
               
               
                 NM_009735 
                 B2m 
                 Beta-2 microglobulin 
                 5.89 
                 3.93 
                 8.09 
                 5.97 
                 13.14 
                 6.74 
                 13.82 
                 11.23 
                 1.88 
               
               
                 NM_008302 
                 Hsp90ab1 
                 Heat shock protein 
                 1.07 
                 1.14 
                 1.09 
                 1.1 
                 1.32 
                 0.66 
                 1.99 
                 1.32 
                 1.2 
               
               
                   
                   
                 90 kDa alpha 
               
               
                   
                   
                 (cytosolic), class B 
               
               
                   
                   
                 member 1 
               
               
                 NM_008302 
                 Hsp90ab1 
                 Heat shock protein 
                 1.03 
                 1.59 
                 1.11 
                 1.24 
                 1.53 
                 0.61 
                 2.03 
                 1.39 
                 1.12 
               
               
                   
                   
                 90 kDa alpha 
               
               
                   
                   
                 (cytosolic), class B 
               
               
                   
                   
                 member 1 
               
               
                 NM_008907 
                 Ppia 
                 Peptidylprolyl 
                 3.73 
                 12.07 
                 3.92 
                 6.58 
                 5.94 
                 3.31 
                 4.46 
                 4.57 
                 0.7 
               
               
                   
                   
                 isomerase A 
               
               
                 NM_008907 
                 Ppia 
                 Peptidylprolyl 
                 3.72 
                 3.8 
                 4.46 
                 3.99 
                 6 
                 3.23 
                 4.14 
                 4.46 
                 1.12 
               
               
                   
                   
                 isomerase A 
               
               
                 SA_00007 
                 BAS2C 
                 Biotinylated Artificial 
                 173.8 
                 175.42 
                 160.43 
                 169.88 
                 83.93 
                 136.64 
                 126.59 
                 115.72 
                 0.68 
               
               
                   
                   
                 Sequence 2 
               
               
                   
                   
                 Complementary 
               
               
                   
                   
                 sequence 
               
               
                 SA_00007 
                 BAS2C 
                 Biotinylated Artificial 
                 276.7 
                 275.3 
                 234.08 
                 262.03 
                 161.09 
                 219.17 
                 211.46 
                 197.24 
                 0.75 
               
               
                   
                   
                 Sequence 2 
               
               
                   
                   
                 Complementary 
               
               
                   
                   
                 sequence 
               
               
                   
               
             
          
         
       
     
     
       
         
               
               
               
               
             
               
               
               
               
               
               
               
               
               
               
               
               
             
               
               
               
               
               
               
               
               
               
               
               
               
             
           
               
                 TABLE 4 
               
             
             
               
                   
               
               
                 RefSeq 
                 Group 1 
                 Group 2 
                 Group 2/ 
               
             
          
           
               
                 Number 
                 Symbol 
                 Description 
                 C1 
                 C2 
                 C3 
                 Avg 
                 TR1 
                 TR2 
                 TR3 
                 Avg 
                 Group 1 
               
               
                   
               
             
          
           
               
                 NM_008084 
                 Gapdh 
                 Glyceraldehyde-3- 
                 26.18 
                 16.7 
                 49.09 
                 30.66 
                 85.24 
                 47.24 
                 96.69 
                 76.39 
                 2.49 
               
               
                   
                   
                 phosphate 
               
               
                   
                   
                 dehydrogenase 
               
               
                 NM_015729 
                 Acox1 
                 Acyl-Coenzyme A 
                 0.66 
                 0.44 
                 2.37 
                 1.16 
                 13.73 
                 2.16 
                 11.03 
                 8.97 
                 7.75 
               
               
                   
                   
                 oxidase 1, palmitoyl 
               
               
                 NM_013465 
                 Ahsg 
                 Alpha-2-HS- 
                 2.45 
                 0.83 
                 2.64 
                 1.97 
                 53.11 
                 4.13 
                 42.04 
                 33.09 
                 16.76 
               
               
                   
                   
                 glycoprotein 
               
               
                 NM_019395 
                 Fbp1 
                 Fructose 
                 0.38 
                 0.42 
                 0.57 
                 0.46 
                 2.7 
                 0.27 
                 2.03 
                 1.67 
                 3.66 
               
               
                   
                   
                 bisphosphatase 1 
               
               
                 NM_010568 
                 Insr 
                 Insulin receptor 
                 0.1 
                 0.22 
                 0.14 
                 0.15 
                 0.57 
                 0.3 
                 0.57 
                 0.48 
                 3.13 
               
               
                 XM_357863 
                 Irs2 
                 Insulin receptor 
                 0 
                 0.09 
                 0.26 
                 0.12 
                 0.33 
                 0.11 
                 0.53 
                 0.33 
                 2.77 
               
               
                   
                   
                 substrate 2 
               
               
                 NM_010591 
                 Jun 
                 Jun oncogene 
                 0.13 
                 0.18 
                 0.18 
                 0.16 
                 0.47 
                 0.23 
                 0.41 
                 0.37 
                 2.24 
               
               
                 NM_008493 
                 Lep 
                 Leptin 
                 0.24 
                 0.22 
                 0 
                 0.15 
                 0.5 
                 0.33 
                 0.86 
                 0.57 
                 3.71 
               
               
                 NM_021284 
                 Kras 
                 V-Ki-ras2 Kirsten rat 
                 0.28 
                 0.31 
                 0.24 
                 0.28 
                 0.72 
                 0.31 
                 0.91 
                 0.65 
                 2.35 
               
               
                   
                   
                 sarcoma viral 
               
               
                   
                   
                 oncogene homolog 
               
               
                 NM_013631 
                 Pklr 
                 Pyruvate kinase liver 
                 0.48 
                 0.2 
                 0.49 
                 0.39 
                 0.11 
                 9.53 
                 0.13 
                 3.26 
                 8.35 
               
               
                   
                   
                 and red blood cell 
               
               
                 NM_029780 
                 Raf1 
                 V-raf-leukemia viral 
                 0.41 
                 0.23 
                 0.77 
                 0.47 
                 0.56 
                 2.31 
                 0.31 
                 1.06 
                 2.24 
               
               
                   
                   
                 oncogene 1 
               
               
                 NM_008871 
                 Serpine1 
                 Serine (or cysteine) 
                 0.21 
                 0.06 
                 0.2 
                 0.16 
                 0.25 
                 0.11 
                 0.53 
                 0.3 
                 1.89 
               
               
                   
                   
                 peptidase inhibitor, 
               
               
                   
                   
                 clade E, member 1 
               
               
                 NM_009505 
                 Vegfa 
                 Vascular endothelial 
                 0.42 
                 0.42 
                 0.57 
                 0.47 
                 1.42 
                 1.04 
                 0.72 
                 1.06 
                 2.27 
               
               
                   
                   
                 growth factor A 
               
               
                 NM_009735 
                 B2m 
                 Beta-2 microglobulin 
                 5.89 
                 3.93 
                 8.09 
                 5.97 
                 13.14 
                 6.74 
                 13.82 
                 11.23 
                 1.88 
               
               
                   
               
             
          
         
       
     
     
       
         
               
               
               
               
             
               
               
               
               
               
               
               
               
               
               
               
               
             
               
               
               
               
               
               
               
               
               
               
               
               
             
           
               
                 TABLE 5 
               
             
             
               
                   
               
               
                 RefSeq 
                 Group 1 
                 Group 2 
                 Group 2/ 
               
             
          
           
               
                 Number 
                 Symbol 
                 Description 
                 C1 
                 C2 
                 C3 
                 Avg 
                 TR1 
                 TR2 
                 TR3 
                 Avg 
                 Group 1 
               
               
                   
               
             
          
           
               
                 NM_011164 
                 Prl 
                 Prolactin 
                 0.22 
                 0.06 
                 0.41 
                 0.23 
                 0.04 
                 0.13 
                 0.07 
                 0.08 
                 0.35 
               
               
                 NM_133656 
                 Crk 
                 V-crk sarcoma virus 
                 0.82 
                 0.6 
                 0.6 
                 0.68 
                 0.35 
                 0.31 
                 0.3 
                 0.32 
                 0.48 
               
               
                   
                   
                 CT10 oncogene 
               
               
                   
                   
                 homolog (avian) 
               
               
                 NM_053246 
                 Dok4 
                 Docking protein 4 
                 0.18 
                 0.3 
                 0.5 
                 0.33 
                 0.24 
                 0.02 
                 0.19 
                 0.15 
                 0.47 
               
               
                 NM_019819 
                 Dusp14 
                 Dual specificity 
                 0.39 
                 0.25 
                 0.21 
                 0.28 
                 0.24 
                 0.05 
                 0.1 
                 0.13 
                 0.46 
               
               
                   
                   
                 phosphatase 14 
               
               
                 NM_008768 
                 Orm1 
                 Orosomucoid 1 
                 0.28 
                 0.3 
                 0.45 
                 0.34 
                 0.05 
                 0.16 
                 0.27 
                 0.16 
                 0.47 
               
               
                 NM_028994 
                 Pck2 
                 Phosphoenolpyruvate 
                 0.45 
                 0.44 
                 0.86 
                 0.58 
                 0.17 
                 0.31 
                 0.36 
                 0.28 
                 0.48 
               
               
                   
                   
                 carboxykinase 2 
               
               
                   
                   
                 (mitochondrial) 
               
               
                 NM_011062 
                 Pdpk1 
                 3-phosphoinositide 
                 0.18 
                 0.12 
                 0.45 
                 0.25 
                 0.13 
                 0.03 
                 0.12 
                 0.09 
                 0.38 
               
               
                   
                   
                 dependent protein 
               
               
                   
                   
                 kinase-1 
               
               
                 NM_011202 
                 Ptpn11 
                 Protein tyrosine 
                 0.22 
                 0.03 
                 0.16 
                 0.14 
                 0.11 
                 0.01 
                 0.08 
                 0.07 
                 0.48 
               
               
                   
                   
                 phosphatase, non- 
               
               
                   
                   
                 receptor type 11 
               
               
                 NM_181585 
                 Pik3r3 
                 Phosphatidylinositol 3 
                 0.38 
                 0.11 
                 0.34 
                 0.28 
                 0 
                 0.23 
                 0 
                 0.08 
                 0.27 
               
               
                   
                   
                 kinase, regulatory 
               
               
                   
                   
                 subunit, polypeptide 3 
               
               
                   
                   
                 (p55) 
               
               
                 NM_009375 
                 Tg 
                 Thyroglobulin 
                 3.47 
                 0.77 
                 0.66 
                 1.64 
                 0.4 
                 0.37 
                 0.26 
                 0.34 
                 0.21 
               
               
                 NM_013692 
                 Klf10 
                 Kruppel-like factor 10 
                 1.09 
                 1.94 
                 0.76 
                 1.26 
                 0.81 
                 0.84 
                 0.7 
                 0.78 
                 0.62 
               
               
                 NM_009463 
                 Ucp1 
                 Uncoupling protein 1 
                 0.72 
                 1.22 
                 0.74 
                 0.89 
                 0.55 
                 0.29 
                 0.33 
                 0.39 
                 0.43 
               
               
                   
                   
                 (mitochondrial, proton 
               
               
                   
                   
                 carrier) 
               
               
                 L08752 
                 PUC18 
                 PUC18 Plasmid DNA 
                 0.47 
                 0.88 
                 0.68 
                 0.68 
                 0.23 
                 0.48 
                 0.31 
                 0.34 
                 0.5 
               
               
                   
               
             
          
         
       
     
     TABLE 6 displays the number of significant up-regulated (&gt;1.5) and TABLE 7 displays the number of significant down-regulated (&lt;1.5) genes in mouse liver tissue treated with glyceollins (E2 added) compared to controls (E2 added). A total of 19 genes were significantly up-regulated by glyceollin treatment, and a total of 31 genes were significantly down-regulated. Again, in this study the lipid metabolism gene ACOX1 was significantly up-regulated and up regulation of the AHSG gene was detected. Several other up-regulated genes involved in lipid and cholesterol function were caused by glyceollin treatment. The SORBS1 gene is important in lipid transport and SREBF1 is involved in cholesterol transport. TABLE 7 also displays several significant down-regulated genes. INS1 is important in insulin regulation. 
     
       
         
               
             
               
               
               
             
               
               
               
             
           
               
                 TABLE 6 
               
             
             
               
                   
               
               
                 Genes Over-Expressed in Group 2 vs. Group 1 
               
             
          
           
               
                   
                   
                 Group 2/ 
               
               
                 Symbol 
                 Description 
                 Group 1 
               
               
                   
               
             
          
           
               
                 Acox1 
                 Acyl-Coenzyme A oxidase 1, palmitoyl 
                 2.89 
               
               
                 Ahsg 
                 Glyceraldehyde-3-phosphate dehydrogenase 
                 3.49 
               
               
                 Akt1 
                 Thymoma viral proto-oncogene 1 
                 1.95 
               
               
                 Akt2 
                 Thymoma viral proto-oncogene 2 
                 3.9 
               
               
                 Cap1 
                 CAP, adenylate cyclase-associated protein 1 
                 4.49 
               
               
                   
                 (yeast) 
               
               
                 Cebpb 
                 CCAAT/enhancer binding protein (C/EBP), 
                 6.49 
               
               
                   
                 beta 
               
               
                 Crk 
                 V-crk sarcoma virus CT10 oncogene homolog 
                 2.8 
               
               
                   
                 (avian) 
               
               
                 Eif2b1 
                 Eukaryotic translation initiation factor 2B, 
                 2.11 
               
               
                   
                 subunit 1 (alpha) 
               
               
                 Eif4ebp1 
                 Eukaryotic translation initiation factor 4E 
                 1.99 
               
               
                   
                 binding protein 1 
               
               
                 Fbp1 
                 Fructose bisphosphatase 1 
                 20.83 
               
               
                 Fos 
                 FBJ osteosarcoma oncogene 
                 3.82 
               
               
                 Hras1 
                 Harvey rat sarcoma virus oncogene 1 
                 1.75 
               
               
                 Map2k1 
                 Mitogen activated protein kinase kinase 1 
                 6.09 
               
               
                 Orm1 
                 Mitogen activated protein kinase kinase 1 
                 9.74 
               
               
                 Ptpn1 
                 Protein tyrosine phosphatase, non-receptor 
                 7.73 
               
               
                   
                 type 1 
               
               
                 Ptpn11 
                 Protein tyrosine phosphatase, non-receptor 
                 30.51 
               
               
                   
                 type 11 
               
               
                 Sorbs1 
                 Sorbin and SH3 domain containing 1 
                 2.36 
               
               
                 Srebf1 
                 Sterol regulatory element binding factor 1 
                 2.04 
               
               
                 Vegfa 
                 Vascular endothelial growth factor A 
                 7.65 
               
               
                   
               
             
          
         
       
     
     
       
         
               
             
               
               
               
             
               
               
               
             
           
               
                 TABLE 7 
               
             
             
               
                   
               
               
                 Genes Under-Expressed in Group 2 vs. Group 1 
               
             
          
           
               
                   
                   
                 Group 2/ 
               
               
                 Symbol 
                 Description 
                 Group 1 
               
               
                   
               
             
          
           
               
                 Aebp1 
                 AE binding protein 1 
                 0.43 
               
               
                 Araf 
                 V-raf murine sarcoma 3611 viral oncogene 
                 0.47 
               
               
                   
                 homolog 
               
               
                 Cbl 
                 Casitas B-lineage lymphoma 
                 0.4 
               
               
                 Cebpa 
                 CCAAT/enhancer binding protein (C/EBP), 
                 0.45 
               
               
                   
                 alpha 
               
               
                 Cebpd 
                 CCAAT/enhancer binding protein (C/EBP), 
                 0.49 
               
               
                   
                 delta 
               
               
                 Csn2 
                 Casein beta 
                 0.39 
               
               
                 Dok2 
                 Docking protein 2 
                 0.34 
               
               
                 Dok3 
                 Docking protein 3 
                 0.3 
               
               
                 Eif4e 
                 Eukaryotic translation initiation factor 4E 
                 0.45 
               
               
                 Frs3 
                 Fibroblast growth factor receptor substrate 3 
                 0.53 
               
               
                 G6pc 
                 Glucose-6-phosphatase, catalytic 
                 0.66 
               
               
                 Gcg 
                 Glucagon 
                 0.48 
               
               
                 Gck 
                 Glucokinase 
                 0.43 
               
               
                 Gpd2 
                 Glycerol phosphate dehydrogenase 2, 
                 0.52 
               
               
                   
                 mitochondrial 
               
               
                 Grb10 
                 Growth factor receptor bound protein 10 
                 0.35 
               
               
                 Grb2 
                 Growth factor receptor bound protein 2 
                 0.36 
               
               
                 Gsk3b 
                 Glycogen synthase kinase 3 beta 
                 0.49 
               
               
                 Igf2 
                 Insulin-like growth factor 2 
                 0.65 
               
               
                 Ins1 
                 Insulin I 
                 0.39 
               
               
                 Ldlr 
                 Low density lipoprotein receptor 
                 0.38 
               
               
                 Nck2 
                 Non-catalytic region of tyrosine kinase adaptor 
                 0.37 
               
               
                   
                 protein 2 
               
               
                 Nos2 
                 Nitric oxide synthase 2, inducible, macrophage 
                 0.4 
               
               
                 Npy 
                 Neuropeptide Y 
                 0.43 
               
               
                 Phip 
                 Pleckstrin homology domain interacting protein 
                 0.54 
               
               
                 Pik3ca 
                 Phosphatidylinositol 3-kinase, catalytic, alpha 
                 0.4 
               
               
                   
                 polypeptide 
               
               
                 Pik3r2 
                 Phosphatidylinositol 3-kinase, regulatory 
                 0.51 
               
               
                   
                 subunit, polypeptide 2 (p85 beta) 
               
               
                 Ppp1ca 
                 Protein phosphatase 1, catalytic subunit, alpha 
                 0.51 
               
               
                   
                 isoform 
               
               
                 Ptprf 
                 Protein tyrosine phosphatase, receptor type, F 
                 0.52 
               
               
                 Retn 
                 Resistin 
                 0.41 
               
               
                 Shc3 
                 Src homology 2 domain-containing 
                 0.39 
               
               
                   
                 transforming protein C3 
               
               
                 Slc27a4 
                 Solute carrier family 27 (fatty acid transporter), 
                 0.42 
               
               
                   
                 member 4 
               
               
                   
               
             
          
         
       
     
     Cholesterol is an integral component of lipid membranes in eukaryotic cells that is required for maintaining membrane fluidity and facilitating the trafficking and signaling of membrane-associated proteins. Cholesterol is also a necessary precursor for important metabolites, such as steroid hormones, bile salts and oxysterols. Several pathways coordinate cholesterol homeostasis in the body. Briefly, in the first pathway, cells acquire cholesterol, primarily through the binding of circulating cholesterol-rich low-density lipoprotein (LDL) particles to cellular lipoprotein receptors. The receptor-ligand complex is subsequently absorbed into the cell through clathrin-mediated endocytosis, and cholesterol is then used by a variety of downstream biochemical pathways. In the second pathway, cholesterol is synthesized when intra-cellular levels are low, through activation of the SCAP/SREBP signaling cascade. SREBP (sterol regulatory element binding protein) is a transcription factor that regulates expression of numerous cholesterol synthesizing genes, and SCAP (SREBP cleavage activating protein) regulates its activity. Finally, a reverse cholesterol transport pathway is activated when the cell accumulates excess cholesterol, which must then be transported to the liver for excretion into the bile. In this third pathway, circulating high-density lipoprotein (HDL) acts as the primary acceptor of cholesterol from non-liver cells. 
     Genistein has been shown to produce a hypolipidemic effect through the up-regulation of genes involved in fatty acid catabolism in the liver. Of particular interest were the observed changes in the expression of genes involved in fatty acid catabolism, including ACOX1. 
     Materials and Methods: Diabetes 
     Primate Study and Diets 
     Subjects for this study were 30 adult female surgically menopausal cynomolgus macaques ( Macaca fascicularis ) with an average age of 17.8±0.5 years. All animals had been ovariectomized for 4 years and housed since this time in stable social groups of 3-4 animals each. Animals were randomized by social group to receive one of three diets containing the following: (1) casein/lactalbumin (C/L, n=9); (2) soy protein isolate containing 193.6 mg/1800 kcal isoflavones (SOY, n=11); and (3) glyceollin-enriched soy protein containing 188.5 mg/1800 kcal isoflavones and 134.1 mg/1800 kcal glyceollins (GLY, n=10). All isoflavone doses are expressed in aglycone equivalents. Each diet also included a physiologic dose of micronized 17β-estradiol (E2, 1 mg/1800 kcal), as described previously (Wood et al 2006). Additional details regarding diet production, composition, and analysis are also provided in this prior report (Wood et al 2006). 
     Briefly, the GLY supplement contained 959.5 μg of unconjugated glyceollins per gram of product (76.8% glyceollin I, 9.9% glyceollin II, and 13.6% glyceollin III), as determined by high pressure liquid chromatography (HPLC) and UV-monitoring (visible spectrophotometry). Relative isoflavone content was also measured using HPLC (by the manufacturer) and reported in aglycone units as 61.5% genistein, 34.6% daidzein, and 3.8% glyceitin for SOY and 52.6% genistein, 43.0% daidzein, and 4.4% glyceitin for GLY. Diets were isocaloric and similar in macronutrients, cholesterol, calcium, and phosphorus. The soy protein isolate was provided by The Solae Company (St. Louis, Mo., USA), while the glyceollin-enriched protein was provided through collaborative efforts of The Solae Company; the Southern Regional Research Center, United States Department of Agriculture; and the Tulane University School of Medicine. Estradiol tablets were obtained from Mylan Pharmaceuticals (Morganton, W. Va.). 
     Animals were fed ˜120 kcal per kg body weight (BW) once daily. Daily doses of isoflavones, glyceollins, and E2 were scaled to 1800 kcal of diet (rather than BW) to account for differences in metabolic rates between the monkeys and human subjects (Schneider et al 2004). Monkeys were thus given 0.44 mg (C/L), 12.91 mg (SOY), or 12.57 mg (GLY) of isoflavones/kg BW; 8.94 mg glyceollins/kg BW (GLY); and 66.7 μg of E2/kg BW (all groups) each day. All procedures involving animals were conducted in compliance with State and Federal laws, standards of the U.S. Department of Health and Human Services, and guidelines established by the Wake Forest University Instituational Animal Care and Use Committee. The facilities and laboratory animal program of Wake Forest University are fully accredited by the Association for the Assessment and Accreditation of Laboratory Animal Care. 
     Gene Microarrays and Quantitative Gene Expression Assays 
     For microarray analyses, total RNA was extracted from frozen mammary fat biopsies using Tri Reagent (Molecular Research Center, Cincinnati, Ohio), purified using RNeasy Mini kit (QIAGEN, Valencia, Calif.), and quantitated using a NanoDrop ND-1000 UV-vis spectrophotometer (NanoDrop, Wilmington, Del.). Biopsy collection has been described previously (Wood et al 2006). RNA intactness and quality were confirmed using an Agilent 2100 Bioanalyzer (Agilent Technologies, Wilmington, Del.). The 3 highest quality samples from each group (n=12 total) were used for microarray analysis. RNA was hybridized to GeneChip Rhesus Macaque Genome Arrays (Affymetrix, Santa Clara, Calif.), washed, and scanned at Cogenics®, a Division of Clinical Data (Morrisville, N.C.). Intensity data were extracted from scanned images using GeneChip Operating Software (Affymetrix). Expression of ten gene targets related to lipid and glucose metabolism pathways (identified on microarray analysis) were determined using quantitative real-time polymerase chain reaction (qRT-PCR). Macaque-specific qRT-PCR primer-probe sets were generated for the internal control genes GAPDH and BACT, while rhesus macaque or human ABI Taqman primer-probe sets were used for target assays (see TABLE 11, showing primer/probe sets for target genes evaluated by qRT-PCR). Total RNA was extracted, quantitated, and reverse-transcribed as above from all mammary samples (n=30). Real-time PCR reactions were performed on an Applied Biosystems ABI PRISM® 7500 Fast Sequence Detection System using Taqman reagents and standard thermocycling protocol. Relative expression was determined using the ΔΔCt method calculated by ABI Relative Quantification 7500 Software v2.0.1. Stock mammary tissue was run in duplicate on each plate as an external calibrator. 
     
       
         
               
               
               
               
               
             
           
               
                 TABLE 11 
               
               
                   
               
               
                 Gene ID 
                 Description 
                 NCBI RefSeq 
                 Species 
                 ABI assay ID 
               
               
                   
               
             
             
               
                 ACTB 
                 actin, beta 
                 DQ464112 
                 Mf 
                 (custom) 
               
               
                 ADIPOQ 
                 adiponectin 
                 NM_001032871 
                 Mm 
                 Rh02788052_m1 
               
               
                 AGPAT2 
                 lysophosphatidic acid acyltransferase, beta 
                 XM_001094264 
                 Mm 
                 Rh02832953_m1 
               
               
                 DGAT2 
                 diacylglycerol O-acyltransferase 2 
                 NM_032564.3 
                 Hs 
                 Hs01045911_m1 
               
               
                 GAPDH 
                 glyceraldehyde-3-phosphate dehydrogenase 
                 DQ464111 
                 Mf 
                 (custom) 
               
               
                 GPAM 
                 glycerol-3-phosphate acyltransferase, 
                 XM_001088103 
                 Mm 
                 Rh02878272_m1 
               
               
                   
                 mitochondrial 
               
               
                 GPD1 
                 glycerol-3-phosphate dehydrogenase 1 
                 XM_001102726 
                 Mm 
                 Rh02857284_m1 
               
               
                 GYS1 
                 glycogen synthase 1 
                 NM_001032886 
                 Mm 
                 Rh01102890_m1 
               
               
                 LASS6 
                 LAG1 homolog, ceramide synthase 6 
                 XM_001102396 
                 Mm 
                 Rh02891284_m1 
               
               
                 LEP 
                 leptin 
                 NM_001042755 
                 Mm 
                 Rh02788316_m1 
               
               
                 LPIN1 
                 lipin 1 
                 NM_145693 
                 Hs 
                 Hs01041902_m1 
               
               
                 LPL 
                 lipoprotein lipase 
                 NM_000237.2 
                 Hs 
                 Hs01012569_m1 
               
               
                 PLIN 
                 perilipin 1 
                 NM_002666.3 
                 Hs 
                 Hs01106922_m1 
               
               
                 PPARA 
                 peroxisome proliferator-activated receptor 
                 NM_001033029 
                 Mm 
                 Rh00947536_m1 
               
               
                   
                 alpha 
               
               
                 PPARG 
                 peroxisome proliferator-activated receptor 
                 NM_138711 
                 Hs 
                 Hs01115511_m1 
               
               
                   
                 gamma 
               
               
                 PPARGC1A 
                 peroxisome proliferator-activated receptor 
                 XM_001105289 
                 Mm 
                 Rh01016729_m1 
               
               
                   
                 gamma, coactivator 1 alpha 
               
               
                 PPARGC1B 
                 peroxisome proliferator-activated receptor 
                 NM_133263.2 
                 Hs 
                 Hs00370186_m1 
               
               
                   
                 gamma, coactivator 1 beta 
               
               
                 SCD 
                 stearoyl-CoA desaturase 
                 XM_001107910 
                 Mm 
                 Rh02929461_m1 
               
               
                 SORBS1 
                 sorbin and SH3 domain containing 1 
                 NM_001034954 
                 Hs 
                 Hs00908952_m1 
               
               
                   
               
             
          
         
       
     
     For TABLE 7, Hs= Homo sapiens ; Mf= Macaca fascicularis  (cynomolgus macaque); Mm= Macaca mulatta  (rhesus macaque). 
     Serum Markers 
     Blood was collected at baseline and post-treatment for measurement of serum markers. Serum concentrations of total glyceollins (I-III) and soy isoflavonoids were determined by liquid chromatographic-photodiode array mass spectrometric analysis. Serum concentrations of E2, vascular and bone turnover markers (monocyte chemoattractant protein (MCP)-1, endothelin (ET)-1, and CrossLaps collagen degradation products (XLAPs)), and metabolic markers (insulin, glucagon-like peptide (GLP)-1), adiponectin, and leptin) were measured using commercially available kits and protocols for radioimmunoassay (E2, DSL-4800 ultra-sensitive from Diagnostic Systems Laboratories, Webster, Tex.) or enzyme-linked immunosorbent assays (MCP-1 and ET-1 from R&amp;D Systems, Minneapolis, Minn.; XLAPs from Osteometer Biotech A/S, Herlev, Denmark; GLP-1 (Total), leptin, and insulin from ALPCO Diagnostics, Salem, N.H.; and adiponectin from Mercodia, Winston-Salem, N.C.). Total cholesterol (TC), high-density lipoprotein cholesterol (HDL), and triglyceride (TG) concentrations were measured using enzymatic methods on a COBAS FARA II analyzer (Roche Diagnostics, Montclair, N.J.) with standard protocols and reagents. Serum assays were run in a fully standardized clinical chemistry laboratory at Wake Forest University School of Medicine. HDL concentrations were measured using the heparin-manganese precipitation procedure. Low-density lipoprotein cholesterol (LDL) plus very low-density lipoprotein cholesterol (VLDL) was calculated as the difference between TPC and HDL. Samples from baseline and post-treatment timepoints were run at the same time for all serum measures. 
     Statistical Analyses 
     Microarray data were analyzed using the GeneSifter® software program (Geospiza, Seattle, Wash.). Intensity data were RMA-normalized, converted to a log 2 scale, screened for heterogeneity among samples and groups, and evaluated using supervised analysis of variance (ANOVA) and pairwise comparisons between treatments. Principal components analysis (PCA), pattern navigation, cluster analysis, heatmapping, and KEGG pathway analyses were performed on filtered data subsets, as described in results. Differences in gene numbers altered by each treatment were compared using a Chi-Square Test. Euclidean distances (representing the numeric difference between treatment vectors) were calculated as part of hierarchical clustering dendrograms using average linkage. Pathways were evaluated via KEGG analyses; a z-score&gt;2.0 was considered a significant overrepresentation of genes in a particular pathway. Representation of differentially expressed genes within specific canonical and functional categories was evaluated using Ingenuity Pathway Analysis (IPA) software v8.0 (Ingenuity Systems, Redwood City, Calif.). Significance of gene numbers within a given category was determined in IPA using a Fisher&#39;s Exact Test with Benjamini and Hochberg correction and expressed as −log 10 (P value) for each treatment group. Other data were analyzed using the SAS statistical package (version 9.1, SAS Institute; Cary, N.C.). A general linear model was used to determine mean values and calculate group differences. All data were evaluated for normal distribution and homogeneity of variances among groups. Gene expression and serum marker data were log-transformed to improve distribution, and data were then retransformed to original scale and reported as fold-change of control with 90% confidence interval. One animal in the SOY group was excluded from gene expression analyses based on poor RNA quality. Final group sizes were thus n=9 for C/L and n=10 for SOY and n=10 for GLY for qRT-PCR data. Post-treatment serum lipid and marker data were covaried by baseline values. All pairwise P-values were adjusted for the number of pairwise tests using a Bonferroni correction. A two-tailed significance level of 0.05 was chosen for all comparisons. 
     Example 6 
     Dietary Intake 
     Body weight, serum E2, and serum isoflavonoids were measured as indicators of diet intake. Treatment groups did not differ significantly in mean BW at baseline or post-treatment, in BW change, or in serum E2 concentrations (ANOVA P&gt;0.05 for all). Mean serum glyceollin concentrations were 134.2±34.6 nmol/L in the GLY group and negligible in the SOY group at 4 hours post-feeding (P&lt;0.001 compared to GLY), while total serum isoflavonoid concentrations were significantly higher in the SOY and GLY groups compared to C/L group at 4 hours (P&lt;0.001 for both) and 24 hours (P&lt;0.05 for both) post-feeding. The SOY and GLY groups did not differ in total serum isoflavonoids at either 4 hours (P=0.59) or 24 hours (P=0.73) post-feeding; individual isoflavonoids were also comparable between the two diets. Total serum isoflavonoids for the SOY and GLY diets at 4 hours post-feeding were comparable to those reported in human soy intervention studies. 
     Example 7 
     Gene Expression Profiles in Mammary Fat for Diets Containing Casein/Lactalbumin (C/L), Standard Soy Protein (SOY), and Glyceollin-Enriched Soy Protein (GLY) 
     Global expression profiles showed greater numbers of genes altered by GLY compared to SOY. For example, among 139 total (named) genes with FC&gt;1.5 and ANOVA P&lt;0.05, a greater number were altered in the GLY group (n=111) compared to the SOY group (n=44) (P&lt;0.001 by Chi-square test) with only 14% overlap of GLY genes with SOY genes ( FIG. 3 ).  FIG. 3  demonstrates that global expression profiles showed greater numbers of genes altered by glyceollin compared to standard soy protein. For example, among 139 total (named) genes with FC&gt;1.5 and ANOVA P&lt;0.05, a greater number were altered in the glyceollin group (n=111) compared to the standard soy protein group (n=44) (P&lt;0.001 by Chi-square test) with only 14% overlap of glyceollin genes with standard soy protein genes. Supervised hierarchical clustering indicated that C/L and SOY (rather than GLY and SOY) were the most closely associated groups with a Euclidean distance of ˜11 for genes significantly altered at FC&gt;1.5 ( FIG. 4 ).  FIG. 4  shows that supervised hierarchical clustering indicated that casein/lactalbumin and standard soy protein (rather than glyceollin and standard soy protein) were the most closely associated groups with a Euclidean distance of ˜11 for genes significantly altered at FC&gt;1.5. The distinction in profiles for glyceollin from standard soy protein was also evident qualitatively from PCA vectors for genes altered at FC&gt;1.5. The distinction in profiles for GLY from SOY was also evident qualitatively from PCA vectors ( FIG. 4 ) and heatmaps ( FIG. 5 ) for genes altered at FC&gt;1.5. A complete list of all significantly altered genes at FC&gt;1.5 by ANOVA and by supervised pairwise comparisons is provided in TABLE 9. TABLE 9 shows the ten gene targets related to lipid and/or carbohydrate metabolism, PPAR and AMPK signaling, and/or adipocytokine activity that were evaluated by qRT-PCR. Of these targets, eight out of ten were upregulated in the glyceollin group compared to casein/lactalbumin (P&lt;0.05 for all) while none of the ten differed between standard soy protein and casein/lactalbumin groups. 
     Example 8 
     Pathway Analyses 
     Pathway analyses were used to sort altered genes by canonical and functional categories. The most overrepresented canonical pathways in IPA for altered genes in the GLY group all related to lipid, carbohydrate, and/or energy metabolism. These pathways included glycerophospholipid and glycerolipid metabolism, cytochrome p450 metabolism, and AMPK signaling (P&lt;0.01 for all) (see TABLE 8, which shows genes significantly altered by GLY and standard soy protein diets (related to lipid, glucose, and energy metabolism) by KEGG pathway analysis; pathways were identified by KEGG analysis from gene probes with FC&gt;1.5, P&lt;0.05, and &gt;2 genes altered in the pathway; only pathways with significant z-score (&gt;2) are shown.); notable pathways include glycerolipid metabolism, peroxisome proliferator-activating receptor (PPAR) signaling, and cytochrome p450 metabolism. Overrepresentation of pathways with significant z-score or related pathways was not seen for the SOY group. The most overrepresented functional pathways in IPA for GLY genes were lipid metabolism, small molecule biochemistry, and carbohydrate metabolism (P&lt;0.05 for all). The most significant subcategory within lipid metabolism was triacylglycerol biosynthesis (−log 10 (P value)=6.9). Similar patterns were seen with KEGG pathway analysis, which revealed significant overrepresentation of altered genes (z-score&gt;2) for the GLY group related to lipid, glucose, and energy metabolism (TABLE 8). Notable pathways here included glycerolipid metabolism, peroxisome proliferator-activating receptor (PPAR) signaling, and cytochrome p450 metabolism. 
     
       
         
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
             
               
             
               
               
               
               
               
               
               
             
           
               
                 TABLE 8 
               
               
                   
               
               
                   
                   
                   
                   
                   
                 z- 
                 z- 
               
               
                 Pathway 
                 list 
                 # ↑ 
                 # ↓ 
                 geneset 
                 score ↑ 
                 score ↓ 
               
               
                   
               
             
             
               
                   
               
             
          
           
               
                 GLY (z-score &gt; 2) 
               
             
          
           
               
                 Glycerophospholipid 
                 6 
                 6 
                 0 
                 58 
                 7.03 
                 −0.36 
               
               
                 metabolism 
               
               
                 Glycerolipid metabolism 
                 4 
                 4 
                 0 
                 37 
                 5.88 
                 −0.29 
               
               
                 Metabolism of 
                 4 
                 4 
                 0 
                 58 
                 4.42 
                 −0.36 
               
               
                 xenobiotics 
               
               
                 by cytochrome P450 
               
               
                 Tyrosine metabolism 
                 3 
                 3 
                 0 
                 44 
                 3.79 
                 −0.32 
               
               
                 Drug metabolism - 
                 3 
                 3 
                 0 
                 55 
                 3.24 
                 −0.35 
               
               
                 cytochrome P450 
               
               
                 PPAR signaling pathway 
                 3 
                 3 
                 0 
                 57 
                 3.16 
                 −0.36 
               
               
                 ECM-receptor interaction 
                 4 
                 3 
                 1 
                 77 
                 2.49 
                 2.02 
               
               
                 Hypertrophic 
                 3 
                 2 
                 1 
                 73 
                 1.44 
                 2.09 
               
               
                 cardiomyopathy 
               
               
                 Autoimmune thyroid 
                 3 
                 1 
                 2 
                 48 
                 0.71 
                 5.82 
               
               
                 disease 
               
             
          
           
               
                 SOY (z-score &gt; 2) 
               
             
          
           
               
                 Hypertrophic 
                 3 
                 3 
                 0 
                 73 
                 5.76 
                 −0.30 
               
               
                 cardiomyopathy 
               
               
                 ECM-receptor interaction 
                 4 
                 3 
                 1 
                 77 
                 5.58 
                 2.96 
               
               
                 Focal adhesion 
                 4 
                 3 
                 1 
                 184 
                 3.20 
                 1.65 
               
               
                   
               
             
          
         
       
     
     Example 9 
     Quantitative Gene Expression 
     To further examine these findings, ten gene targets related to lipid and/or carbohydrate metabolism, PPAR and AMPK signaling, and/or adipocytokine activity were evaluated by qRT-PCR. Nine out of the 16 targets evaluated were upregulated in the GLY group compared to C/L (P&lt;0.05 for all) while none of the 16 differed between SOY and C/L groups (see TABLE 9, showing dietary protein effects on relative expression of select genes related to lipid and glucose metabolism, PPAR signaling, and adipocytokine activity within mammary adipose tissue, as determined by qRT-PCR). Targets increased in the GLY group included genes for adipocytokine signaling (adiponectin and leptin), carbohydrate metabolism (glycerol-3-phosphate dehydrogenase and glycogen synthase), PPAR signaling (PPARγ and lipin1), and lipid metabolism (lipoprotein lipase and perilipin). It is worth noting that considerable crosstalk occurs among these categories and that particular molecules may thus function in multiple pathways. 
     
       
         
               
               
               
               
               
             
           
               
                 TABLE 9 
               
               
                   
               
               
                 Gene 
                 C/L 
                 SOY 
                 GLY 
                 Pathways 
               
               
                   
               
             
             
               
                 ADIPOQ 
                 1.0 (0.7-1.3) 
                 1.5 (1.2-1.9) 
                 3.2 (2.6-3.8)** ,#   
                 adipocytokine &amp; PPAR signaling; type 
               
               
                   
                   
                   
                   
                 II diabetes 
               
               
                 DGAT2 
                 1.0 (0.7-1.4) 
                 2.6 (2.1-3.2) 
                 3.0 (2.5-3.6)* 
                 glycerolipid metabolism, triglyceride 
               
               
                   
                   
                   
                   
                 biosynthesis 
               
               
                 GPAM 
                 1.0 (0.8-1.2) 
                 1.1 (0.9-1.3) 
                 1.8 (1.6-2.1) 
                 glycerolipid, glycerophospholipid, &amp; 
               
               
                   
                   
                   
                   
                 fatty acid metabolism, triglyceride 
               
               
                   
                   
                   
                   
                 biosynthesis 
               
               
                 GPD1 
                 1.0 (0.7-1.3) 
                 2.0 (1.6-2.5) 
                 3.4 (2.8-4.2)** 
                 glycerolipid, glycerophospholipid, &amp; 
               
               
                   
                   
                   
                   
                 carbohydrate metabolism, 
               
               
                   
                   
                   
                   
                 gluconeogenesis 
               
               
                 GYS1 
                 1.0 (0.8-1.2) 
                 1.4 (1.2-1.6) 
                 1.9 (1.6-2.1)** 
                 starch metabolism, insulin signaling 
               
               
                 LASS6 
                 1.0 (0.8-1.2) 
                 0.6 (0.4-0.7) 
                 0.5 (0.4-0.7) 
                 lipid biosynthesis 
               
               
                 LEP 
                 1.0 (0.7-1.4) 
                 2.4 (1.8-3.3) 
                 4.4 (3.4-5.9)** 
                 adipocytokine, Jak-STAT, &amp; cytokine- 
               
               
                   
                   
                   
                   
                 cytokine signaling 
               
               
                 LPIN1 
                 1.0 (0.8-1.3) 
                 1.9 (1.6-2.4) 
                 2.7 (2.2-3.2)* 
                 PPAR &amp; insulin signaling; triglyceride 
               
               
                   
                   
                   
                   
                 &amp; nutrient metabolism 
               
               
                 LPL 
                 1.0 (0.8-1.3) 
                 1.4 (1.1-1.7) 
                 2.7 (2.2-3.3)** 
                 glycerolipid metabolism; PPAR 
               
               
                   
                   
                   
                   
                 signaling 
               
               
                 PGC1A 
                 1.0 (0.7-1.3) 
                 0.6 (0.4-0.8) 
                 0.9 (0.7-1.1) 
                 adipocytokine &amp; insulin signaling 
               
               
                   
                   
                   
                   
                 pathways; glucose homeostasis; fatty 
               
               
                   
                   
                   
                   
                 acid oxidation; gluconeogenesis 
               
               
                 PGC1B 
                 1.0 (0.8-1.2) 
                 0.9 (0.7-1.1) 
                 1.1 (1.0-1.3) 
                 PPAR, estrogen receptor, &amp; 
               
               
                   
                   
                   
                   
                 glucocorticoid signaling 
               
               
                 PLIN 
                 1.0 (0.8-1.3) 
                 1.6 (1.3-1.9) 
                 2.7 (2.2-3.2)** 
                 PPAR signaling 
               
               
                 PPARA 
                 1.0 (0.8-1.2) 
                 1.0 (0.8-1.2) 
                 1.1 (0.9-1.3) 
                 adipocytokine &amp; PPAR signaling 
               
               
                 PPARG 
                 1.0 (0.7-1.5) 
                 2.4 (1.7-3.5) 
                 5.6 (4.0-7.8)** 
                 adipocytokine &amp; PPAR signaling 
               
               
                 SCD 
                 1.0 (0.6-1.5) 
                 2.2 (1.6-3.0) 
                 2.3 (1.6-3.1) 
                 fatty acid biosynthesis, PPAR signaling 
               
               
                 SORBS1 
                 1.0 (0.8-1.2) 
                 1.2 (1.0-1.5) 
                 1.8 (1.5-2.1) 
                 PPAR &amp; insulin signaling 
               
               
                   
               
               
                 Values represent mean fold-change relative to C/L diet with 90% confidence interval. 
               
               
                 *P &lt; 0.05 vs C/L; 
               
               
                 **P &lt; 0.01 vs C/L; 
               
               
                   # P &lt; 0.05 vs SOY. 
               
             
          
         
       
     
     Example 10 
     Serum Markers 
     Serum lipid measures did not differ significantly among groups at baseline (ANOVA P&gt;0.05 for all). Following treatment, the GLY group had lower TC and LDL+VLDL compared to C/L and SOY groups (P&lt;0.01 for all) and greater TG compared to C/L (P=0.008) (see TABLE 10, showing treatment effects on serum lipids, vascular, bone turnover, and metabolic markers). The SOY group also had greater TG compared to the C/L group (P=0.02). No significant group differences were seen for HDL or TC to HDL ratio. No group differences were observed for serum MCP-1, ET-1, XLAPS, or metabolic markers at baseline or post-treatment (ANOVA P&gt;0.05 for all). 
     
       
         
               
               
               
               
             
               
             
               
               
               
               
             
               
             
               
               
               
               
             
               
             
               
               
               
               
             
           
               
                   
                 TABLE 10 
               
               
                   
                   
               
               
                   
                 C/L 
                 SOY 
                 GLY 
               
               
                   
                   
               
             
             
               
                   
               
             
          
           
               
                 Lipids 
               
             
          
           
               
                 TC (mg/dl) 
                  337 (311-364) 
                  322 (300-345) 
                  225 (210-242)** ,##   
               
               
                 TG (mg/dl) 
                   53 (45-62) 
                   97 (85-112)* 
                  108 (93-126)** 
               
               
                 HDL (mg/dl) 
                   43 (37-50) 
                   46 (40-53) 
                   49 (42-57) 
               
               
                 VLDL + 
                  282 (257-309) 
                  262 (241-284) 
                  171 (157-186)** ,##   
               
               
                 LDL (mg/dl) 
               
               
                 TC/HDL 
                  7.4 (6.3-8.8) 
                  7.1 (6.1-8.2) 
                  4.7 (4.1-5.5) 
               
             
          
           
               
                 Vascular and bone markers 
               
             
          
           
               
                 MCP-1 
                  194 (178-212) 
                  206 (189-223) 
                  189 (174-205) 
               
               
                 (pg/ml) 
               
               
                 ET-1 (pg/ml) 
                 1.76 (1.53-2.03) 
                 1.38 (1.21-1.56) 
                 1.30 (1.13-1.49) 
               
               
                 XLAPs 
                 0.92 (0.82-1.02) 
                 0.91 (0.82-1.01) 
                 0.84 (0.75-0.94) 
               
               
                 (ng/ml) 
               
             
          
           
               
                 Metabolic markers 
               
             
          
           
               
                 Insulin 
                 16.7 (14.0-19.8) 
                 20.0 (17.1-23.4) 
                 19.0 (16.1-22.4) 
               
               
                 (mU/L) 
               
               
                 GLP-1 
                  4.1 (3.1-5.3) 
                  2.7 (2.1-3.4) 
                  2.8 (2.1-3.5) 
               
               
                 (pmol/L) 
               
               
                 Adiponectin 
                  4.7 (4.0-5.5) 
                  3.1 (2.6-3.6) 
                  4.8 (4.1-5.5) 
               
               
                 (ug/ml) 
               
               
                 Leptin 
                  1.1 (0.9-1.3) 
                  1.4 (1.2-1.6) 
                  0.9 (0.7-1.0) 
               
               
                 (ng/ml) 
               
               
                   
               
               
                 TC = total cholesterol; 
               
               
                 LDL = low density lipoprotein; 
               
               
                 VLDL = very low density lipoprotein; 
               
               
                 HDL = high density lipoprotein; 
               
               
                 TG = triglyceride; 
               
               
                 GLP-1 = glucagon-like peptide-1 
               
             
          
         
       
     
     TABLE 10 demonstrates that serum lipid measures did not differ significantly among groups at baseline (ANOVA P&gt;0.05 for all). Following treatment, the glyceollin group had lower total cholesterol and low density lipoprotein+very low density lipoprotein compared to casein/lactalbumin and standard soy protein groups (P&lt;0.01 for all) and greater triglyceride compared to casein/lactalbumin (P=0.008). The values of TABLE 10 represent mean (90% confidence interval) at post-treatment covaried by baseline measures. P values were corrected for multiple pairwise comparisons. For conversion of lipid values to SI units (mmol/l), divide by 38.67 for TC, LDL+VLDL, and HDL, and by 88.57 for TG. Symbols indicate significant differences with casein/lactalbumin group (*P&lt;0.05, **P&lt;0.01) or with standard soy protein group (##P&lt;0.01). 
     Glyceollins are a novel class of phytoalexin compounds produced as defense molecules in response to stress by certain types of leguminous plants, most notably soy. In this study we evaluated transcriptional profiles in mammary adipose tissue resulting from glyceollin-enriched soy protein in comparison with a standard soy protein isolate. We identified a distinct gene expression profile for GLY that showed minimal overlap with that of SOY. The effects of GLY related primarily to pathways involved in lipid and carbohydrate metabolism, including PPAR and adipocytokine signaling, lipoprotein lipase, and triglyceride metabolism. The GLY diet also resulted in lower serum total cholesterol, specifically non-high-density lipoprotein cholesterol, compared to the C/L diet. These preliminary findings suggest that glyceollin-enriched soy protein has divergent effects from standard soy related to adipocyte activity and nutrient metabolism. 
     Diet is a major determinant of metabolic syndrome and related comorbid conditions, and dietary interventions with beneficial metabolic effects may have an important role in breast cancer prevention. Prior findings suggest that glyceollins may competitively bind estrogen receptors (ERs) and elicit selective ER-modulating properties distinct from soy isoflavonoids. The role of specific isoflavonoids and their derivatives in modulating metabolic pathways remains poorly understood. Notable genes upregulated by the GLY diet included PPARγ, adiponectin, lipin 1, and lipoprotein lipase. 
     Prior results have shown that glyceollins may function as natural selective ER modulators. Results of this pilot study suggest that glyceollin-enriched soy protein may also have biologically relevant effects on pathways related to lipid, carbohydrate, and energy metabolism. The present inventors&#39; findings demonstrate that soybean treatment prior to processing may alter the profile of bioactive constituents in soy protein, leading to distinct physiologic and metabolic effects from standard soy protein isolates. This idea may also have important implications for the identification of bioactive components in other plant-based foods. 
     Materials and Methods: Glucose Uptake 
     Solutions 
     Krebs-Ringers-Hepes (KRH) buffer was prepared with 200 mL H 2 O, 300 μL of 1 M CaCl 2 , 300 μL of 1.2 M MgSO 4 , 300 μL of 1 M KH 2 PO 4 , 3 mL of 0.14 M KCl, 6 mL of 1 M HEPES in 1.2 M NaHCO 3 , and 15 mL of 2.6 M NaCl. The pH was adjusted to 7.4 H 2 O was added to bring the final volume to 300 mL. The resulting solution was filter sterilized with a 0.22 μm filter. 
       D -glucose (MW=180.16) stock solution (100 mM) was prepared by dissolving 180.16 mg  D -glucose in 10 mL H 2 O. 
     Tracer working solution was prepared fresh for each plate by adding 3 μl of tracer stock solution (1 μCi/μl) to 297 μL of 100 mM  D -glucose to yield 0.1 μCi [ 3 H]2-deoxyglucose in 99 mM glucose. 10 μL was added to each well with a final volume in each well of 1000 μL=0.1 μCi at 0.99 mM  D -glucose. 
     Insulin (MW=5808) stock solution (100 μM) was prepared by dissolving 2.90 mg insulin into 5 mL of 0.01 N HCl. To make working solutions: the stock solution was diluted 1:10 by adding 100 μL stock to 900 μL KRH buffer, giving solution A (10 μM); solution A was diluted by adding 400 μL of solution A to 932 μL KRH buffer, giving solution B (3 μM); solution A was diluted by adding 100 μL of solution A to 900 μL KRH buffer, giving solution C (1 μM); solution B was diluted by adding 100 μL of solution B to 900 μL KRH buffer, giving solution D (300 nM); solution C was diluted by adding 100 μL of solution C to 900 μL KRH buffer, giving solution E (100 nM); solution D was diluted by adding 100 μL of solution D to 900 μL KRH buffer, giving solution F (30 nM); solution E was diluted by adding 100 μL of solution E to 900 μL KRH buffer, giving solution G (10 nM); solution F was diluted by adding 100 μL of solution F to 900 μL KRH buffer, giving solution H (3 nM); solution G was diluted by adding 100 μL of solution G to 900 μL KRH buffer, giving solution I (1 nM); and solution H was diluted by adding 100 μL of solution H to 900 μL KRH buffer, giving solution J (0.3 nM). 100 μL of each concentration was added to each well with a final volume in each well of 1000 μL (1:10 dilution when added to cells). 
     A 10 mM stock glyceollin solution was prepared by combining 3.38 mg of mixture of glyceollin I (about 76.8%), glyceollin II (about 9.9%), and glyceollin III (about 13.6%) with 1 mL DMSO. This stock solution was kept refrigerated. To make working solutions: 80 μL of the stock solution was diluted with 3920 μL KRH buffer, giving solution A (200 μM); solution A was diluted by adding 500 μL of solution A to 335 μL KRH buffer, giving solution B (120 μM); solution A was diluted by adding 1000 μL of solution A to 1000 μL KRH buffer, giving solution C (100 μM); solution A was diluted by adding 1000 μL of solution A to 1500 μL KRH buffer, giving solution D (80 μM); solution A was diluted by adding 1000 μL of solution A to 2330 μL KRH buffer, giving solution E (60 μM); solution D was diluted by adding 1000 μL of solution D to 1000 μL KRH buffer, giving solution F (40 μM); solution F was diluted by adding 1000 μL of solution F to 1000 μL KRH buffer, giving solution G (20 μM); solution G was diluted by adding 1000 μL of solution G to 1000 μL KRH buffer, giving solution H (10 μM); and solution H was diluted by adding 1000 μL of solution H to 1000 μL KRH buffer, giving solution I (5 μM). 100 μL of each concentration was added to each well with a final volume in each well of 1000 μL (1:10 dilution when added to cells). Unless indicated otherwise (see, e.g., EXAMPLES 14 &amp; 15), where the EXAMPLES below refer to glyceollin, a mixture of glyceollins I, II, and III, was used. 
     Cells 
     Cell culture and differentiation of murine 3T3-L1 cells is a well-accepted model for study of adipocyte differentiation, glucose uptake, and insulin action. These cells undergo a program of differentiation manifest by large lipid droplet accumulation when stimulated by the appropriate hormonal cocktail. The adipocytes express markers such as leptin and adiponectin, express Glut 4, and respond to insulin stimulation by increasing glucose uptake, similar to primary adipocytes. For these experiments, frozen preadipocytes were purchased from Zenbio (Research Triangle Park, N.C.). They were thawed at 37° C., diluted with Zenbio Preadipocyte medium, and incubated in 24-well plates at 37° C. in a humidified atmosphere containing 95% air and 5% CO 2  until confluent. Signals derived from confluency were allowed by incubating for 2 more days. Preadipocyte medium was replaced with Zenbio Differentiation Medium and the cells were incubated for 3 additional days; that medium was replaced with Zenbio Adipocyte Maintenece medium for about 2 weeks when greater than 95% of the cells appeared filled with large lipid droplets. 
     Example 11 
     Glucose Stimulation &amp; Glyceollin Incubation 
     Glucose uptake assay was performed with fully differentiated 3T3-L1 adipocytes after starving the cells of serum, insulin, and glucose in the Zenbio Adipocyte Maintenece medium by incubating at 37° C. in 1 ml Krebs Ringer Buffer for different time periods as indicated in the figures after a 1 mL wash with KRH. The next day, the cells were washed once with KRH buffer, and then KRH, insulin, and/or glyceollin solutions were added to wells 1-24 according to the challenge maps at  FIGS. 7 and 8 . The cells were incubated, then exposed to different concentrations of glyceollin, insulin, or both for 30 min or 45 min (for glyceollin alone) at 37° C. in KRB, after which 10 μL of [ 3 H]2-deoxyglucose in  D -glucose was added. Each plate was then incubated in a 37° C. water bath for 10 minutes, then placed on ice. The overlying medium was removed and replaced with 1 mL ice-cold KRH buffer, and each well was then washed twice with fresh ice-cold KRH buffer. The KRH buffer was removed, and 500 μL of radio-immunoprecipitation assay (RIPA) buffer was added, after which all visible cells were washed free of (displaced from) the bottom of each well using a 1 mL pipette. From each well, 450 μL was collected for assay and measured for [ 3 H] in a liquid scintillation counter. Data were expressed as CPM/well. A similar experiment was performed in which the cells were not starved of serum prior to incubation with insulin. Those data are shown in  FIG. 9 , which reflects a comparatively small increase in insulin-mediated glucose uptake. As shown in  FIG. 10 , for example, insulin-mediated glucose uptake was greatly improved (sensitivity increased about 10× versus  FIG. 9 , and maximum insulin-mediated glucose uptake improved about 5×) by starving the cells of ZenBio Adipocyte Maintenance medium (which contains high levels of glucose as well as significant levels of insulin) for 24 hours by replacing the Maintenance medium with KRH. Comparison of  FIGS. 9 and 10  reveals that replacement of ZenBio Adipocyte Maintenance medium with KRH buffer containing neither glucose nor insulin improved the insulin responsiveness of the cells.  FIG. 11  shows another insulin dose response curve from experiments identical to those from  FIG. 10 , except that a rapid pipetting technique was used. These data demonstrate the potential for creating insulin resistance in this cell line. Further data demonstrate that glyceollin does not alter insulin sensitivity, as suggested by Park, S. et al. “Glyceollins, One of the Phytoalexins Derived from Soybeans under Fungal Stress, Enhance Insulin Sensitivity and Exert Insulinotropic Actions”  J. Agric. Food Chem.  2010; 58(3):1551-1557. 
     Example 12 
     Pre-Incubation with KRH Alone or KRH with Glyceollin 
     To extend the study of EXAMPLE 11, and to test whether a glyceollin present during the 24-hour serum starvation would produce measurable effects, cells were serum-starved for 24 hours by replacing the Maintenance medium with either KRH alone, or KRH supplemented with 5 μM glyceollin. Following this serum-starvation protocol, cells were exposed to 0.3 nM insulin in KRB (a very low dose) for 30 minutes at 37° C., after which 10 μL of [ 3 H]2-deoxyglucose in  D -glucose was added. Glucose uptake was assayed as above. As shown in  FIG. 12 , in the absence of pre-incubation with glyceollin, 5 μM glyceollin alone stimulated glucose uptake to a greater degree than did 0.3 nM insulin (compare columns 2 and 3). This result is particularly surprising because it has been suggested that glyceollin does not stimulate glucose uptake without the presence of insulin. The experiment was repeated with a rapid pipetting technique and without 24-hour serum starvation, and the results are shown in  FIG. 13 . The results of Park et al. mirror those shown by comparison of columns 5 and 6 of  FIG. 13 , which was interpreted as demonstrating an increase in insulin sensitivity because glucose uptake was enhanced by addition of 5 uM glyceollin ( FIG. 13 , column 5). Column 3 of  FIG. 13 , however, again demonstrates that 5 μM glyceollin stimulates glucose uptake to an even greater degree than 0.3 nM insulin alone (see col. 2); column 4 demonstrates the combined effects of insulin and glyceollin, which appear to be at least additive and may be synergistic (comparing to either col. 2 or 3). Glyceollin has been thought to require at least 16 to 24 hours to be effective, and the pre-incubation conditions of columns 5-8 of  FIG. 13  (using serum-free medium) were designed to explore this supposition. However, comparison of columns 2 and 4 of  FIG. 13  represent data from cells starved of serum for 24 hours and only then stimulated with either insulin (column 2) or glyceollin with insulin (column 4) for 30 minutes, and reveal the surprising finding that glyceollin is clearly effective at stimulating glucose uptake without pre-incubation. 
     Example 13 
     Pre-Incubation with KRH Alone or KRH with Glycinol 
     To test whether glycinol (instead of glyceollin) present during the 24-hour serum starvation would produce measurable effects, cells were serum-starved for 24 hours by replacing the Maintenance medium with either KRH alone, or KRH supplemented with 5 μM glycinol, and the experiments otherwise carried out as set forth for EXAMPLE 12. Glycinol is a much more potent estrogen agonist than the glyceollins; Park et al. characterize glyceollin as a selective estrogen receptor modulator (SERM) and propose that glyceollin likely enhances glucose uptake via an estrogen agonist action. As shown in  FIG. 14 , however, glycinol is ineffective at stimulating glucose uptake and may in fact inhibit glucose uptake (compare columns 1 &amp; 8). These data suggest that an estrogen-mediated pathway is not responsible for stimulating glucose uptake. 
     Example 14 
     Pre-Incubation with Different Glyceollins 
     To compare the glyceollin mixture (used above, for the prior EXAMPLES) against the individual glyceollins (I, II, and III) that make up that mixture, cells were pre-incubated for 24 hours with either the glyceollin mixture (glyceollins I, II, and III), glyceollin I, glyceollin II, or glyceollin III. As shown in  FIG. 15 , each of the glyceollins is effective at enhancing insulin-mediated glucose uptake, and it appears that glyceollins I and III are more effective than glyceollin II. The data of  FIG. 16  confirm this finding, demonstrating that all three glyceollins enhance insulin-mediated glucose uptake. For the experiments shown in  FIG. 16 , 3T3-L1 differentiated adipocytes pre-incubated for 24 hours with KRH (serum-starved) were exposed for 30 minutes to 5 μM of glyceollin mixture or individual glyceollins, with insulin, or to glycinol in the absence of insulin. The columns of  FIG. 16  are as follows: 1) DMSO control; 2) KRH control; 3) Glyceollin Mix (5 μM); 4) Glyceollin I (5 μM); 5) Glyceollin II (5 μM); 6) Glyceollin III (5 μM); 7) Glycinol (1 μM); 8) Glycinol (0.1 μM). Glyceollin I appears to stimulate glucose uptake better than glyceollins II and III; because the glyceollin mixture contains about 75% glyceollin I, it would be expected to have less activity than purified glyceollin I. Columns 7 and 8 indicate that glycinol does not present the same bioactivity as glyceollin, as demonstrated earlier. Finally, column 1 demonstrates that the DMSO vehicle does not have any effect on glucose uptake. 
     Example 15 
     Glyceollins I &amp; III Stimulate Glucose Uptake in the Absence of Insulin 
     Cells were pre-incubated (serum starved) for 24 hours in KRH, then exposed to glyceollins I or III in either the presence or absence of insulin. The data of  FIG. 17  demonstrate that both glyceollins I and III can stimulate glucose uptake in the absence of insulin, but that glucose uptake is further enhanced after addition of insulin. The columns of  FIG. 17  are as follows: 1) DMSO control; 2) 0.3 nM insulin; 3) Glyceollin I (5 μM); 4) 0.3 nM insulin+Glyceollin I (1 μM); 5) 0.3 nM insulin+Glyceollin I (5 μM); 6) Glyceollin III (5 μM); 7) Glyceollin I (1 μM); 8) 0.3 nM insulin+Glyceollin III (5 μM). Columns that differ from each other by p&lt;0.05 have differing superscript letters. 
     Example 16 
     Response of 3T3-L1 Differentiated Adipocytes to Very Low Doses of Insulin 
     The experiments described for EXAMPLE 11 were repeated using lower concentrations of insulin. The dose-response curve of  FIG. 18  shows the effects of very low insulin concentrations on glucose uptake in 3T3-L1 differentiated adipocytes. 
     Example 17 
     Glucose Uptake After 19 Hours Pre-Incubation with Glyceollin Mixture 
     3T3-L1 differentiated adipocytes were pre-incubated for 19 hours with either KRH or with the glyceollin mixture (glyceollins I, II, and III) at the concentrations indicated. Cells were then washed and challenged with insulin at the concentrations indicated, and the results are shown in  FIG. 19 . Column 2 demonstrates stimulation of glucose uptake by 0.2 nM insulin alone (compare columns 1 &amp; 2). Columns 3, 4, and 5 indicate that 5 μM glyceollin is required to further stimulate glucose uptake (i.e., that 0.5 and 1.0 μM glyceollin concentrations are insufficient). Column 6 demonstrates a maximal insulin dose (1 nM), and bar 8 demonstrates that preincubation with glyceollin (5 μM) enhances glucose uptake even further. These data suggest are surprising because it has not been known that glyceollin can stimulate glucose uptake beyond that of a high insulin dose. These data also suggest that glyceollin does not enhance insulin sensitivity, but rather stimulates glucose uptake via an insulin-independent mechanism. The experiment was repeated with pre-incubation of only 3 hours (instead of 19 hours), and the data show that a 3-hour pre-incubation with glyceollin mixture is sufficient to stimulate glucose uptake to a level above that achieved with insulin alone ( FIG. 20 ). 
     Example 18 
     Glucose Uptake After 45 Minutes Pre-Incubation with Glyceollin Mixture 
     3T3-L1 differentiated adipocytes were exposed to either KRH for 45 minutes (see  FIG. 21 , “∘”) as a control, or to a 5 μM glyceollin mixture (see  FIG. 21 , “●”), then challenged with different doses of insulin to generate a dose-response curve as described above (see, e.g., EXAMPLE 11); the results are presented in  FIG. 21 . Unlike the serum-starvation experiments above, this study did not involve removing serum for 24 hours; the purpose was to create an insulin-insensitive system to determine whether glyceollin would increase insulin sensitivity. The response observed when cells are pre-incubated with KRH is very much blunted and insulin-insensitive, as shown by the open circles (∘) and compared to the insulin dose-response curves generated after an overnight medium switch (24-hour serum starvation; see  FIG. 18 ). If glyceollin increases insulin sensitivity, as commonly supposed, then the insulin dose-response curve of  FIG. 21  should be shifted to the left. It was not; glucose uptake increased significantly at all insulin challenge levels. This indicates that glyceollin must stimulate glucose uptake via a mechanism that is independent of insulin. Because insulin-mediated glucose uptake is mediated by the GLUT4 transporter, and since these cells have a GLUT 1 transporter (this is believed to be responsible for basal glucose uptake), it appears likely that glyceollin does not increase insulin sensitivity by altering GLUT 4 but rather increases basal glucose uptake via GLUT 1. 
     Example 19 
     Glyceollin-Stimulated Glucose Uptake in the Absence of Insulin 
     3T3-L1 differentiated adipocytes were pre-incubated (serum-starved) for 24 hours in KRH to starve the cells of glucose and insulin, as demonstrated earlier. This provides a very sensitive assay for glucose uptake. The cells were then incubated for 45 minutes with various concentrations of the glyceollin mixture, washed, and then incubated in KRH for an additional 30 minutes. As demonstrated in  FIG. 22 , glyceollin mixture alone stimulates basal glucose uptake in an insulin-independent manner. 
     All references cited in this specification are herein incorporated by reference as though each reference was specifically and individually indicated to be incorporated by reference. The citation of any reference is for its disclosure prior to the filing date and should not be construed as an admission that the present disclosure is not entitled to antedate such reference by virtue of prior invention. 
     It will be understood that each of the elements described above, or two or more together may also find a useful application in other types of methods differing from the type described above. Without further analysis, the foregoing will so fully reveal the gist of the present disclosure that others can, by applying current knowledge, readily adapt it for various applications without omitting features that, from the standpoint of prior art, fairly constitute essential characteristics of the generic or specific aspects of this disclosure set forth in the appended claims. The foregoing embodiments are presented by way of example only; the scope of the present disclosure is to be limited only by the following claims.