Judul: Pengklonan kandidat gen resisten terhadap selenium dari isolat bakteri termofilik Geobacillus sp20k
Abstrak: Termophilic bacteria which is resistant to selenium has a specific mechanism enabling it to accumulate and make the toxic selenium becomes nontoxic to the bacteria itself. The mechanism of action is believed because of the existence of a gene that function to confer resistance to Se (Selenium). However, the existence of the gene itself has not been scientifically proven. Therefore it is necessary to do research on thermophilic bacteria to obtain isolate of thermophilic bacteria from hot springs that have gene encoding resistance to selenium (Se) and clone the gene into an E. coli. Isolated genomic DNA of the thermophilic bacteria as well as the plasmid were cut with Eco RI enzyme. Fragments of bacterial DNA was ligated into the vector and then transformed into E. coli cells. Transformants were tested by using blue white colony to show the growth of white colonies indicated the presence of inserted DNA fragment in pGEM3zf while the growth of blue colonies indicated the absence of DNA fragments inserted in pGEM3zf. Molecular weight of the recombinant plasmid was measured using standard curve with obtained assistance line following equation: Y = 19473.807-6294.596X; where X = distance migration and Y = base pairs. Molecular weight of the recombinant plasmid obtained was 14 438 bp.
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Judul: Telaah pengklonan gen protease dari Bacillus stearo thermophilus ke dalam Escherichia coli
Abstrak: Fragmen-fragmen genom dari Bacillus stearothermophilus, yang dipotong secara parsial dengan Eco RI atau HindIII, telah diklon dalam Escherichia coli dengan teknik shot gun cloning menggunakan plasmid pRK415 sebagai vektornya untuk gen protease. Media agar MacConkey (Jennings dan Beacham, 1989) dengan sedikit modifikasi dipakai untuk deteksi koloni pembawa plasmid rekombinan atau plasmid nonrekombinan. Media tersebut terdiri dari 10 g tripton, 5 g ekstrak kha­ mir, 10 g laktose, 0.075 g neutral red, 15 g agar dalam 1 L dH20, pH diatur pada 7 .4. Untuk deteksi ekspresi gen protease, media tersebut ditambahkan 2 % susu skim. Media ini dinamakan SMMCA (skim milk modified MacConkey agar). Penghilangan kristal violet, garam empedu dan garam memberikan hasil yang baik untuk deteksi koloni-koloni tersebut. Sel koinpeten untuk keperluan pengklonan disiapkan dengan metode miniprep, sesuai prosedur Lederberg dan Cohen (1974) dengan sedikit modifikasi, dilakukan dengan cara mensentrifusi 1.5 mL kultur fase log dalam tabung mikro setelah sebe­lumnya diinkubasikan selama 30 menit pada 0°C. Pelet sel dicuci dengan 1 mL 0.1 M CaC12 dingin, kemudian sel disuspensikan dalam 0.5 mL 0.1 M CaC12 dingin dan diinkubasikan pada 0°C selama 20 menit, sentrifusi terakhir dilakukan dan pelet sel disuspensikan dalam 0.2 mL 0.1 M CaC12 dingin, pada kondisi ini sel siap digu­ nakan untuk transformasi. Isolasi DNA kromosom dengan metode Marmur (1961) mendapatkan DNA dengan kualitas yang cukup baik, dan dapat dipakai untuk keperluan kloning, walauiv pun dilakukan tidak sampai pada tahap pemurnian lanjutan seperti penghilangan RNA dan pemekatan. Dari 500 mL kultur fase log diperoleh lebih kurang 2 mg DNA kromosom. ...
Keyword: Escherichiacoli, Proteinase

Judul: Hamiltonian formulation for linear waves motion in two layers fluid
Abstrak: The surface wave could be considered as a wave that separates two fluids, namely water and air. Based on this assumption, it is introduced the interfacial wave, a wave between two layers of fluid with different density. The formulation of interfacial waves motion begins with deriving the base equation of irrotational ideal fluid. Furthermore, according to irrotational fluid assumption, the base equation can be stated in velocity potential. In this derivation, the fluids domain is assumed to be restricted by rigid lid boundary conditions, both at the upper and lower limit. Therefore, the interfacial waves motion can be explained in a hamiltonian formulation. In the hamiltonian formulation, total energy is defined as the sum of kinetic and potential energy. The hamiltonian system is obtained from reduction of kinetic energy by using the Dirichlet Neumann Operator. The resulted kinetic energy equation is nonlinear. Therefore, this form is linearized by first part of the Taylor expansion. This linearization gives a dispersion relation of linear wave. Based on this dispersion relation, the phase speed of the linear wave depends on the density ratio of the two layers fluid.
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