Judul: Drought Stress Tolerance Mechanisms of Eggplant (Solanum spp.): Physiology and Molecular.
Abstrak: Eggplant (Solanum melongena L.) is a popular and economically important vegetable crop grown in the tropics and subtropics, especially in Asia and Africa. Most of these crops grown in Asia and Africa are tolerant to biotic and abiotic stresses. Eggplant has a wide variation in morphological and physiological characteristics, therefore, it is necessary to explore the germplasm to gain more genotypes tolerant to biotic and abiotic stresses. Sufficient water availability at the first stage of plant growth is very important. Limited water supply may lead to drought stress. The long period of drought stress may disturb the metabolic process and lead the irreversible damage of the plant tissues, so the plant can not recover. This abiotic stress has been significantly proved to be one of factors decreasing the plant growth and productivity. The objective of this research was to reveal physiological and molecular response of six eggplant accessions (i.e. 098, 155, 414, 754, 772, and 827 accessions, and Panjalu-F1 as the control genotype) to drought stress. Plants were grown in medium containing soil, sand and compost (1:1:1, v/v/v) in the greenhouse. Plants were exposed to the drought treatment at 21 days after the plants have 6 fully leaves. Some parameters were examined during the drought treatment, which were media water content (MWC), relative water content (RWC), plant growth and dry weight, proline concentration, chlorophyll content and polyamine concentration. Total RNA was extracted from leaves on day 21st of the treatment. The arginine decarboxylase S. melongena (SmADC) fragment gene was amplified from the cDNA. ADC gene is one of genes involved in polyamine biosynthesis and plays important role in the plant tolerance mechanism to drought stress. The results showed that drought stress significantly reduced plant height, leaf area, stomatal density and aperture in all plants. Levels of chlorophylls were similar during the drought treatment in all plants. Proline and/or polyamines were accumulated and reached the maximum levels after 14 to 21 days after the treatment. High levels of these amines can be used to indicate that the plant is stressed by drought. Levels of proline and polyamines, especially putrescine, increased 10 times higher in the stressed-plants compared to those grown in the optimum condition. cDNA was synthesized from the total RNA by reverse transcription. In total, four fragments of SmADC were obtained by PCR from cDNA of accession 098 (2 fragments), cDNA of accession 772 (1 fragment) and genomic DNA of accession 098 (1 fragment). ADC primers were designed based on the conserved regions in ADC Solanum lycopersicum (accession number HM629957.1). Sequences analysis showed that the four SmADC fragments were 1 442 bp, 1 422 bp, 1 407 bp and 636 bp, encoding 151, 357, 466, 182 amino acids, respectively. Nucleotide alignment analysis showed that four SmADC fragments were 86-93 % homologue to Solanum lycopersicum (Acc: NM_001247720.1), Datura stramonium (Acc: AJ251898.1), Capsicum annuum (Acc: AY156514.1) and Nicotiana tabacum (Acc: AF321137.1). Based on the phylogenetic tree developed from the deduced amino acid sequence of ADC, SmADCs were grouped with Solanum lycopersicum, Datura stramonium, Capsicum annuum and Nicotiana tabacum. Analysis of conserved domains revealed that
Keyword: eggplant, proline, polyamine, arginine decarboxylase (ADC), pyridoxal 5-phosphate (PLP)

Judul: Drought Stress Tolerance Mechanisms of Eggplant (Solanum spp.): Physiology and Molecular.
Abstrak: Eggplant (Solanum melongena L.) is a popular and economically important vegetable crop grown in the tropics and subtropics, especially in Asia and Africa. Most of these crops grown in Asia and Africa are tolerant to biotic and abiotic stresses. Eggplant has a wide variation in morphological and physiological characteristics, therefore, it is necessary to explore the germplasm to gain more genotypes tolerant to biotic and abiotic stresses. Sufficient water availability at the first stage of plant growth is very important. Limited water supply may lead to drought stress. The long period of drought stress may disturb the metabolic process and lead the irreversible damage of the plant tissues, so the plant can not recover. This abiotic stress has been significantly proved to be one of factors decreasing the plant growth and productivity. The objective of this research was to reveal physiological and molecular response of six eggplant accessions (i.e. 098, 155, 414, 754, 772, and 827 accessions, and Panjalu-F1 as the control genotype) to drought stress. Plants were grown in medium containing soil, sand and compost (1:1:1, v/v/v) in the greenhouse. Plants were exposed to the drought treatment at 21 days after the plants have 6 fully leaves. Some parameters were examined during the drought treatment, which were media water content (MWC), relative water content (RWC), plant growth and dry weight, proline concentration, chlorophyll content and polyamine concentration. Total RNA was extracted from leaves on day 21st of the treatment. The arginine decarboxylase S. melongena (SmADC) fragment gene was amplified from the cDNA. ADC gene is one of genes involved in polyamine biosynthesis and plays important role in the plant tolerance mechanism to drought stress. The results showed that drought stress significantly reduced plant height, leaf area, stomatal density and aperture in all plants. Levels of chlorophylls were similar during the drought treatment in all plants. Proline and/or polyamines were accumulated and reached the maximum levels after 14 to 21 days after the treatment. High levels of these amines can be used to indicate that the plant is stressed by drought. Levels of proline and polyamines, especially putrescine, increased 10 times higher in the stressed-plants compared to those grown in the optimum condition. cDNA was synthesized from the total RNA by reverse transcription. In total, four fragments of SmADC were obtained by PCR from cDNA of accession 098 (2 fragments), cDNA of accession 772 (1 fragment) and genomic DNA of accession 098 (1 fragment). ADC primers were designed based on the conserved regions in ADC Solanum lycopersicum (accession number HM629957.1). Sequences analysis showed that the four SmADC fragments were 1 442 bp, 1 422 bp, 1 407 bp and 636 bp, encoding 151, 357, 466, 182 amino acids, respectively. Nucleotide alignment analysis showed that four SmADC fragments were 86-93 % homologue to Solanum lycopersicum (Acc: NM_001247720.1), Datura stramonium (Acc: AJ251898.1), Capsicum annuum (Acc: AY156514.1) and Nicotiana tabacum (Acc: AF321137.1). Based on the phylogenetic tree developed from the deduced amino acid sequence of ADC, SmADCs were grouped with Solanum lycopersicum, Datura stramonium, Capsicum annuum and Nicotiana tabacum. Analysis of conserved domains revealed that
Keyword: eggplant, proline, polyamine, arginine decarboxylase (ADC), pyridoxal 5-phosphate (PLP)

Judul: Hamiltonian formulation for linear waves motion in two layers fluid
Abstrak: The surface wave could be considered as a wave that separates two fluids, namely water and air. Based on this assumption, it is introduced the interfacial wave, a wave between two layers of fluid with different density. The formulation of interfacial waves motion begins with deriving the base equation of irrotational ideal fluid. Furthermore, according to irrotational fluid assumption, the base equation can be stated in velocity potential. In this derivation, the fluids domain is assumed to be restricted by rigid lid boundary conditions, both at the upper and lower limit. Therefore, the interfacial waves motion can be explained in a hamiltonian formulation. In the hamiltonian formulation, total energy is defined as the sum of kinetic and potential energy. The hamiltonian system is obtained from reduction of kinetic energy by using the Dirichlet Neumann Operator. The resulted kinetic energy equation is nonlinear. Therefore, this form is linearized by first part of the Taylor expansion. This linearization gives a dispersion relation of linear wave. Based on this dispersion relation, the phase speed of the linear wave depends on the density ratio of the two layers fluid.
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