text: blast=2.7.1
  bbmap=38.56
  bmtagger=3.101
  bwa=0.7.17
  cd-hit=4.6.8
  cd-hit-auxtools=4.6.8
  diamond=0.9.10
  kmc=3.1.1rc1
  gatk=3.8
  kaiju=1.6.3_yesimon
  krakenuniq=0.5.7_yesimon
  krona=2.7.1
  last=876
  lbzip2=2.5
  lz4-c=1.9.1
  fastqc=0.11.7
  gap2seq=3.1.1a2
  mafft=7.402
  mummer4=4.0.0beta2
  muscle=3.8.1551 
  mvicuna=1.0
  novoalign=3.07.00
  parallel=20160622
  picard-slim=2.21.1
  pigz=2.4
  prinseq=0.20.4
  samtools=1.9
  snpeff=4.3.1t
  spades=3.12.0
  tbl2asn=25.6
  trimmomatic=0.38
  trinity=date.2011_11_26
  unzip=6.0
  vphaser2=2.0
  r-base=3.5.1
  # Python packages below
  arrow=0.12.1
  bedtools=2.28.0
  biopython=1.72
  future==0.16.0
  matplotlib=2.2.4
  pysam=0.15.0
  pybedtools=0.7.10
  PyYAML=5.1
  