text: % Generated by roxygen2: do not edit by hand
  % Please edit documentation in R/integration.R
  \name{GetTransferPredictions}
  \alias{GetTransferPredictions}
  \title{Get the predicted identity}
  \usage{
  GetTransferPredictions(
    object,
    assay = "predictions",
    slot = "data",
    score.filter = 0.75
  )
  }
  \arguments{
  \item{object}{Seurat object}
  
  \item{assay}{Name of the assay holding the predictions}
  
  \item{slot}{Slot of the assay in which the prediction scores are stored}
  
  \item{score.filter}{Return "Unassigned" for any cell with a score less than
  this value}
  }
  \value{
  Returns a vector of predicted class names
  }
  \description{
  Utility function to easily pull out the name of the class with the maximum
  prediction. This is useful if you've set \code{prediction.assay = TRUE} in
  \code{\link{TransferData}} and want to have a vector with the predicted class.
  }
  \examples{
  \dontrun{
    prediction.assay <- TransferData(anchorset = anchors, refdata = reference$class)
    query[["predictions"]] <- prediction.assay
    query$predicted.id <- GetTransferPredictions(query)
  }
  }
  