text: #!/bin/bash
  
  ############################################################################
  # Copyright (c) 2015 Saint Petersburg State University
  # Copyright (c) 2011-2014 Saint Petersburg Academic University
  # All Rights Reserved
  # See file LICENSE for details.
  ############################################################################
  
  
  ./prepare_cfg
  errlvl=$?
  if [ "$errlvl" -ne 0 ]
  then
      echo "prepare_cfg finished with exit code $errlvl"
      exit $errlvl
  fi
  
  ./spades_compile.sh
  errlvl=$?
  if [ "$errlvl" -ne 0 ]
  then
      echo "spades_compile finished with exit code $errlvl"
      exit $errlvl
  fi
  
  timestamp="`date +%Y-%m-%d_%H-%M-%S`"
  if [ "$#" > 0 ]
  then
      timestamp=$timestamp"_"$1
  fi
  
  mkdir -p ./ace_benchmark
  
  echo "Starting E.coli is220 on ace..."
  rm -f ./ace_benchmark/ECOLI_IS220_QUAKE.log
  ./src/test/teamcity/teamcity.py /Johnny/data/input/Bacteria/E.coli/K12/is220/ECOLI_IS220_QUAKE_BM.info $1 >> ./ace_benchmark/ECOLI_IS220_QUAKE_$timestamp.log 2>> ./ace_benchmark/ECOLI_IS220_QUAKE_$timestamp.log
  echo "finished with code "$?
  
  echo "Starting E.coli UCSD lane 1 on ace..."
  rm -f ./ace_benchmark/ECOLI_SC_LANE_1.log
  ./src/test/teamcity/teamcity.py /Johnny/data/input/Bacteria/E.coli/K12/sc_lane_1/corrected/ECOLI_SC_LANE_1_BH_BM.info $1 >> ./ace_benchmark/ECOLI_SC_LANE_1_$timestamp.log 2>> ./ace_benchmark/ECOLI_SC_LANE_1_$timestamp.log
  echo "finished with code "$?
  
  echo "Starting M.ruber JGI lane 9 on ace..."
  rm -f ./ace_benchmark/MRUBER_JGI_LANE_9.log
  ./src/test/teamcity/teamcity.py /Johnny/data/input/Bacteria/M.ruber/jgi_lane_9/MRUBER_JGI_LANE_9_BM.info $1 >> ./ace_benchmark/MRUBER_JGI_LANE_9_$timestamp.log 2>> ./ace_benchmark/MRUBER_JGI_LANE_9_$timestamp.log
  echo "finished with code "$?
  
  echo "Starting P.heparinus JGI lane 7 on ace..."
  rm -f ./ace_benchmark/PHEPARINUS_JGI_LANE_7.log
  ./src/test/teamcity/teamcity.py /Johnny/data/input/Bacteria/P.heparinus/jgi_lane_7/PHEPARINUS_JGI_LANE_7_BM.info $1 >> ./ace_benchmark/PHEPARINUS_JGI_LANE_7_$timestamp.log 2>> ./ace_benchmark/PHEPARINUS_JGI_LANE_7_$timestamp.log
  echo "finished with code "$?
  
  