METHOD TO TYPE PRION PROTEINS

Abstract: The invention relates to methods and materials for use in the typing, diagnosis, prevention and/or treatment of prion disease.

Description: METHOD TO TYPE PRION PROTEINS The present invention relates to the provision of materials and methods for the diagnosis, prevention and/or treatment of disease. In particular, spongiform encephalopathies or any disease associated with prion proteins. Prions are infectious pathogens that differ from bacteria, fungi, parasites, viroids, and viruses, both with respect to their structure and with respect to the diseases that they cause. Molecular biological and structural studies of prions promise to open new vistas into fundamental mechanisms of cellular regulation and homeostasis not previously appreciated. Kuru, Creutzfeldt- Jakob disease (CJD), fatal familial insomnia (FFI) and Gerstmann-Straussler-Scheinker syndrome (GSS) are all human neurodegenerative diseases that are caused by prions and are frequently transmissible to laboratory animals. Familial CJD and GSS are also genetic disorders. No effective therapy exists to prevent these fatal disorders. In addition to the prion diseases of humans, disorders of animals are included in the group of known prion diseases. Scrapie of sheep and goats is the most studied of the prion diseases. Bovine spongiform encephalopathy (BSE) is thought to result from abnormal feeding practices. BSE threatens the beef industry of Great Britain and possibly other countries; the production of pharmaceuticals involving cattle is also of concern. Control of sheep scrapie in many countries is a persistent and vexing problem. Prion diseases are associated with the accumulation of a conformational isomer (PrP 50 ) of host-derived prion protein (PrF) with an increase in its β-sheet content. According to the protein-only hypothesis, PrP 80 is the principal or sole component of transmissible prions. Although the structure of PrP 0 has been determined and has been found to consist predominantly of α-helices, the insolubility of PrP 50 , which is isolated from tissue in a highly aggregated state and which has a high β-sheet content, has precluded high-resolution structural analysis. The detection of the disease-associated isoform of prion protein, PrP 50 , in brain or other tissues from patients is thought to be diagnostic of prion disease. Previously, we have identified four human PrP 80 types or strains that are associated with distinct forms of sporadic or acquired Creutzfeldt- Jakob disease (CJD) 2 . Type 4 PrP 50 characterises new variant CJD (vCJD), causally related to bovine spongiform encephalopathy 2"4 while there is no evidence for an animal origin for the prion strains causing classical CJD (PrP 50 types 1-3) 12 . Following limited proteolysis with proteinase K (PK) and Western blotting these distinct types of PrP 50 can be readily distinguished by differing fragment sizes or relative differences in intensities of the three PrP glycoforms (corresponding to amino-terminally truncated cleavage products generated from di-, mono-, or non- glycosylated PrP 50 ) 2 (Fig. 1). A common PrP polymorphism (with either methionine (M) or valine (V) at residue 129) contributes to genetic susceptibility to both sporadic and acquired human prion disease 13 14 . To date, types 1 and 4 PrP 50 have been found only in individuals of the MM genotype, type 2 is seen with all genotypes (MM, MV and VV) and type 3 p r pSc on iy with genotypes MV or VV (2,15,16 an d unpublished data). An earlier study 17 of PrP 50 types in classical CJD had described only two types of PrPSc and these authors have argued that the types 1 and 2 we describe correspond to their type 1, while our type 3 pattern corresponds to their type 2 18 . However, these authors concede a degree of heterogeneity in their type 1 cases 17 . We have performed a large-scale study of PrP 50 types in CJD in conjunction with the UK National CJD Surveillance Unit. Comprehensive phenotypic assessment of patients and p r pSc typing were performed blind. A detailed study will be published elsewhere, but we have been able to demonstrate that patients classified as type 1 and type 2 using our criteria have quite distinct phenotypes (Fig. 2), confirming the validity of our molecular classification. Type 1 human CJD is a distinct human prion disease with an aggressive clinical course and remarkably short clinical duration. These observations are consistent with PrPSc conformation being the foundation of prion strain diversity. According to the invention there is provided methods suitable for typing PrP 50 and methods of altering the conformation of PrP 50 . Also provided is the use of agents capable of affecting the binding of PrP 50 to one or more divalent metal ions and methods of screening for and using agents capable of converting type 1 PrP 50 to type 2 PrP 50 or type 2 " PrP 50 and vice versa and/or type 2 PrP 50 to type 2 " PrP 50 and vice versa. These aspects of the invention are defined in the accompanying claims and/or described hereinafter. The disease-related isoform of PrP, PrP 50 , is distinguished biochemically from the normal cellular isoform of the protein, PrP c , by its partial resistence to digestion with the enzyme proteinase K(PK). PK will completely digest PrP c but only removes a protease-sensitive N terminal portion of PrP $c , under the conditions specified in the methods section. By "affecting the binding of PrP 50 to one or more divalent metal ions" we include the meaning that the occupancy of the metal binding sites is altered. Preferably this alteration gives rise to a change in the conformation of PrP 50 and changes in conformation can be observed by subjecting the PrP 50 to digestion and electrophoresis as described herein. This form of PrP 50 is referred to herein as type 2 " PrP 50 and constitutes a further aspect of the invention. More preferably, the change in conformation results in a form of PrP 50 which exhibits a lower apparent molecular mass than type 1 and/or type 2 PrP 50 when subjected to digestion and electrophoresis as described herein. The ability of an agent to convert type 1 PrP 50 to type 2 PrP 50 can be determined by exposing type 1 PrP 50 type to the agent then subjecting the PrP 50 to digestion and electrophoresis as described herein and comparing the digestion products with type 2 PrP 50 digestion products under the same conditions. If the products are the same, conversion to type 2 is indicated. The prion disease may be selected from one or more of the diseases affecting humans. Alternatively or additionally, the prion diseases are selected from one or more of the diseases which affect domestic farm animals such as cows, sheep and goats. Other prion diseases include transmissible mink encephalopathy; chronic wasting disease of mule deer and elk, bovine spongiform encephalopathy and, more recently, a whole series of new animal diseases that are thought to have arisen from their dietary exposure to the BSE agent. These include feline spongiform encephalopathy, affecting domestic cats and captive wild cats (such as cheetahs, pumas, ocelots, tigers) and spongiform encephalopathies of captive exotic ungulates (including kudu, nyala, gemsbok, eland). Whilst the invention has been described using human PrP 50 as an illustrative example, skilled persons will appreciate that the invention is intended to embrace PrP 50 from any animal which is susceptible to a prion disease including the animals mentioned above, but especially bovine or ovine PrP 50 . The ability of the agents of the invention to alter the conformation of PrP 50 may be especially important for inherited prion disease. That is, early diagnosis of inherited mutation through prion gene analysis eg from blood samples, may allow therapeutic intervention, for example administration of agents which do not favour the type 1 PrP 50 conformation eg divalent metal ion chelators, especially Cu 2+ and/or Zn 2+ chelators, if genetic predisposition to type 1 and/or type 2 PrP 50 propagation is indicated. Methods of detecting genetic predisposition to type 1 and/or type 2 PrP 5 propagation are described in an International (PCT) application No. PCT/GB97/02843, published as W098/ 16834 and incorporated herein by reference. Copper chelating therapies currently used in the treatment of Wilson's disease may be useful in the prevention and/or treatment of prion disease. The chelators penicillamine (proprietory names Cupr- ine, Cupren, Depen, Distamine, D-penamine, Gerondyl, Kelatin, Metalcaptase, Pendramine, Sufortan, Sufortanan, and Trolvol); Trientine dihydrochloride (proprietory name Syprine) and Dimercaprol (Proprietory name Sulfactin Homburg) are all drugs currently licenced for human use. Divalent metal ion supplements, especially copper supplements and zinc supplements may also be useful in the treatment and/or prevention of prion disease. There are many copper and zinc supplements that are available for human use. The invention also provides a kit comprising means for carrying out the methods of the invention. The invention also provides a kit useful for diagnosing a prion disease comprising as described herein. Preferably, in the methods of the invention the sample comprises or consists of a bodily tissue or fluid, which may be blood or a derivative of blood, ie a component such as plasma, or is derived from lymphoid tissue (such as tonsils, appendices, lymph nodes, spleen) or brain or is cerebrospinal fluid, or faeces, urine or sputum, for example. The biological sample may be a tissue sample eg a biopsy tissue sample. Preferred non-limiting methods and examples which embody certain aspects of the invention will now be described in which: - Fig. 1. Western blot of human PrP Sc types 1-4 following protease K treatment using anti-PrP monoclonal 3F4. Lane 1, type 1 PrP 80 , ERNE 129MM; lane 2, type 2 PrP 50 , ERNE 129MM; lane 3, type 3 PrP 50 , ERNE 129W; lane 4, type 4 PrP 50 , ERNE 129MM. Fig. 2. Mean duration of illness for CJD patients with PrP 50 types 1 and 2. Duration in type 1 cases is significantly different from type 2 regardless of ERNE codon 129 genotype (p < 0.004; Mann-Whitney U test). Fig. 3. Proteinase K digestion of human PrP 50 in the presence of metal chelators. (a, b) Effects of EDTA on digestion of PrP 50 types 1 - 4. 10 % w/v brain homogenates prepared in cold lysis buffer were proteinase K treated directly (denoted -) or after (denoted +) adjustment of EDTA to 20mM final concentration, (a) Lane 1 and 2, type 1 PrP 50 ; lane 3 and 4, type 2 PrP So , 129M. (b) Lane 1 and 2, type 1 PrP 50 129 genotype MM; lane 3 and 4, type 2 PrP 50 , 129 genotype MM; lane 5 and 6, type 3 PrP 50 , 129 genotype MV; lane 7 and 8, type 4 PrP So , 129 genotype MM. (c) The effect of EDTA on type 1 PrP 50 is consistent in different buffers. 10 % w/v brain homogenates from a type 1 PrP 50 patient were prepared in cold lysis buffer (CLB) (lanes 1 and 2), PBS (lanes 3 and 4) or Ν-ethylmorpholine buffer (M) (lanes 5 and 6) and proteinase K digested before (denoted -) or after (denoted +) adjustment with EDTA to 20mM final concentration. (d) EDTA exposes a new proteinase K cleavage site on type 1 PrP 50 . Aliquots of a 10 % w/v PBS brain homogenate from a type 1 PrP 50 patient were western blotted directly (no proteinase K treatment) in the absence (lane 1) or presence (lane 2) of 25mM EDTA. In lanes 3 - 5, aliquots of a 10 % w/v PBS brain homogenate from a type 1 PrP 50 patient were proteinase K treated in the absence (lanes 3 and 5) or presence (lane 4) of 25mM EDTA. Following proteolysis, the sample in lane 5 was boiled in SDS sample buffer and subsequently adjusted to 25mM EDTA prior to electrophoresis. (e, f) Effects of different chelators on the digestion of type 1 PrP 50 . Aliquots of a 10 % w/v N-ethylmorpholine buffer brain homogenate from a type 1 PrP 50 patient were proteinase K treated in the absence (lanes 1) or presence (lanes 2 - 7) of different chelators. The chelators and their final concentrations were: (e) lane 2, 20mM EDTA; lane 3, 20mM EGTA; lane 4, 20mM dipicolinic acid; lane 5, 20mM bathophenanthroline disulfonic acid; lane 6, 20mM neocuproine; lane 7, 20mM 1, 10 phenanthroline. (f) lane 2, 20mM EDTA; lane 3, 20mM EGTA; lane 4, 20mM triethylenetetramine; lane 5, 20mM dipicolinic acid; lane 6, lOmM triethylenetetramine plus lOmM dipicolinic acid; lane 7, lOmM triethylenetetramine plus lOmM bathophenanthroline disulfonic acid. Fig. 4. Washing PrP 50 type 1 and type 2 (ERNE 129MM) in the presence of various metal ions. (a) Type 1 PrP 50 . Aliquots of a 10 % w/v brain homogenate from a type 1 PrP So patient prepared in PBS were proteinase K digested before (lane 1) or after washing with either Ν-ethylmorpholine buffer alone (lane 2) or the same buffer containing, 20μM FeCl 3 , lmM MgCl 2 , lμM ΝiCl 2 , 2mM CaCl 2 , 0.05μM MnCl 2 , and 0.03μM CoCl 2 (lane 3); lOμM ZnCl 2 (lane 4); 20μM ZnCl 2 (lane 5); lOμM CuSO 4 (lane 6); 20μM CuSO 4 (lane 7); 25μM CuSO 4 (lane 8). (b) Type 1 PrP So . Aliquots of a 10 % w/v brain homogenate from a type 1 PrP So patient prepared in PBS were proteinase K digested before (lane 1) or after washing with N-ethylmorpholine buffer (lanes 2-4). Following proteolysis and prior to electrophoresis, samples in lanes 3 and 4 were washed with N- ethylmorpholine buffer containing either 20μM ZnCl 2 , (lane 3) or 25μM CuSO 4 , (lane 4). (c) Type 1 PrP 50 . Aliquots of a 10 % w/v brain homogenate from a type 1 PrP 50 patient prepared in N-ethylmorpholine buffer were proteinase K digested after washing with either N-ethylmorpholine buffer alone (lane 1) or the same buffer containing, 20μM ZnCl 2 (lane 2); 30μM NiCl 2 (lane 3); 30μM CoCl 2 (lane 4); 30μM MnCl 2 (lane 5); or 30μM FeCl 3 (lane 6). (d) Type 2 PrP 50 . Aliquots of a 10% w/v brain homogenate from a type 2 PrP 50 patient prepared in cold lysis buffer were proteinase K digested before (lane 1) or after washing with either N-ethylmorpholine buffer alone (lane 2) or the same buffer containing, 20 μM ZnCl 2 , (lane 3) or 25 μM CuSO 4 , (lane 4). Lanes 5 and 7 show digestion products from a type 1 PrP 50 PBS homogenate which was proteinase K treated directly (lane 5) or after addition of 25mM EDTA (lane 6). Methods 1. Western blot analysis All procedures were carried out in a microbiological containment level 3 facility with strict adherence to safety protocols. 10 % w/v brain homogenates from human brain tissue obtained at autopsy from patients with CJD were prepared in the following solutions: cold lysis buffer (lOmM Tris, lOmM EDTA pH 7.4 containing lOOmM NaCl, 0.5 % w/v NP-40 and 0.5 % w/v sodium deoxycholate); phosphate buffered saline (PBS) (Dulbecco's sterile PBS lacking Ca 2+ and Mg + ; Sigma); N- ethylmorpholine buffer (25mM N-ethylmorpholine pH 7.4 containing 0.5 % w/v NP-40). Samples were adjusted to a final concentration of 50 μg/ml proteinase K (Merck) and incubated at 37 °C for 1 h. Digestion was terminated by addition of an equal volume of 2 x SDS sample buffer (125mM Tris-HCl, 20 % v/v glycerol pH 6.8 containing 4 % w/v SDS, 4 % v/v 2-mercaptoethanol, 8mM 4-(2-aminoethyl)-benzene sulfonyl fluoride and 0.02 % w/v bromophenol blue) and immediate transfer to a 99 °C heating block for 10 min. Samples were analysed by electrophoresis and western blotting using anti-PrP monoclonal antibody 3F4 as described previously 2 . 2. Chelation studies Chelators were added to brain homogenates as aliquots from stock solutions. EDTA was prepared as either a 100 or 250mM stock in water and titrated to pH 8.0 with NaOH. Other chelators (see legend to Fig. 3) were prepared similarly as lOOmM stock solutions pH 8.0, with the exception of 1 , 10 phenanthroline and neocuproine which were prepared as lOOmM stocks in 50 % v/v ethanol in water. All chelators were obtained from Sigma. Physical properties of the various chelators used and the stability constants of complexes formed with various metal ions are detailed elsewhere 33 . 3. Metal supplementation studies 10 μl aliquots of 10 % w/v brain homogenates were centrifuged for 10 min at 14,000 rpm in a microfuge after which supernatants were removed and discarded. Pellets were thoroughly resuspended in 500μl 25mM N-ethylmorpholine pH 7.4 containing 0.5 % w/v NP-40 which either lacked or contained various metal salts as detailed in the legend to Fig. 4. Following incubation for " 10 min at room temperature, samples were centrifuged (15 min at 14,000 rpm in a microfuge) after which the supernatant was discarded. Each aspirated pellet was resuspended appropriately with the analogous solution to a final volume of lOμl and treated with proteinase K. In some experiments samples were washed with metal solutions after proteinase K digestion. EXAMPLES AND RESULTS 1. Types 1 and 2 PrP 5 * conformations depend on metal ions In an attempt to elucidate the molecular basis of this strain variation, we have investigated the biochemical properties of type 1 and 2 human PrP So . All patients studied were of ERNE codon 129 genotype MM. When type 1 and type 2 PrP 50 were treated with 20 mM ΕDTA, prior to treatment with PK, the pattern of cleavage was changed. Rather than producing their distinct patterns, both types gave indistinguishable and common fragment sizes (Fig. 3a). As these digestion products migrate with lower molecular mass than either type 1 or type 2, we designated this type 2 " . In marked contrast, treatment with ΕDTA did not alter the generation of characteristic cleavage products from PrP 50 types 3 or 4 (Fig. 3b). The generation of type 2 " cleavage products from type 1 PrP 50 typically required final ΕDTA concentrations in the range of 15-20mM, no further change was elicited by higher chelator concentrations (data not shown). This action of ΕDTA was fully reproducible ( > 60 repetitions using samples from nine separate type 1 patients) and occurred irrespective of the buffer in which brain homogenates were prepared (Fig. 3c). Nine homogenates from type 1 and type 2 patients were analysed before and after ΕDTA treatment. In each case the expected shift of type 1 or type 2 to type 2 " was detected. We have estimated the shift in apparent molecular mass from type 1 to type 2 " and type 2 M129 to type X to be 1.1 ± 0.3kDa (mean ± SD; n = 9) and 0.65 ± 0.3kDa (mean ± SD; n = 9), respectively. There was no significant alteration in the ratios of the three principal PrP glycoforms. Importantly, the possibility that EDTA itself directly influenced electrophoretic mobility was excluded. Without protease digestion, type 1 PrP 50 samples migrated equivalently in the presence or absence of EDTA (Fig. 3d). Similarly, application of EDTA to type 1 PrP 50 samples after proteolysis had no effect i (Fig. 3d). Collectively, these findings suggest that the respective conformations of type 1 PrP So and type 2 PrP 50 M129 depend upon the presence of metal ions and that metal chelation induces a conformational change which exposes a new proteolytic cleavage site that is apparently common to both metal-depleted conformers. Effects of metal-selective chelators As the amino-terminal octapeptide repeat region of PrP has been shown to bind Cu 2+19"24 , we considered a role for Cu 2+ in determining metal-dependent PrP 50 conformation. However, the use of various metal-selective chelating agents revealed a more complex situation. In contrast to the effects of EDTA (a broad specificity chelator with high affinity for many divalent metal ions), other more selective chelators, including those with high affinity for Cu 2+ (EGTA; triethylenetetramine), Cu + (neocuproine), Zn 2+ (dipicolinic acid; 1, 10 phenanthrolme) or Fe 2+ (1, 10 phenanthrolme; bathophenanthroline disulfonic acid) were unable to precisely mirror this action (Fig. 3e and f). However, the effectiveness of combined application of triethylenetetramine and dipicolinic acid (Fig. 3f) suggested that chelation of both Cu 2+ and Zn 2+ may be required for generation of type 2 " cleavage products from type 1 PrP 50 . 3. Both Cu 2+ and Zn 2+ interact with PrP 30 To study this further we developed an alternative method for probing the metal dependency of PrP 50 conformation by washing the homogenates to strip bound metal from the protein. We found that washing type 1 PrP 50 homogenates with N-ethylmorpholine buffer (equivalent to ~5000 fold dilution) prior to protease digestion readily resulted in the formation of type 2 " digestion products (Fig 4a and b). Repetition of this procedure using buffers supplemented with various metal ions at total concentrations observed in serum 25 convincingly demonstrated that the type 1 conformation is dependent on metal ions. In the maintained presence of Cu 2+ or Zn 2+ , digestion products closely resembled those generated from untreated type 1 PrP 50 (Fig. 4a), that is the original PrP 50 conformation was retained. Other metal ions when present at their respective total concentration found in serum had no effect, either when applied separately (not shown) or together (Fig. 4a). Importantly, anomalous electrophoretic mobility of cleavage products in the presence of Cu 2+ or Zn 2+ can be excluded. Exposure of metal-depleted and proteinase K digested type 1 PrP 50 samples to either Cu 2+ or Zn 2+ prior to and during electrophoresis had no effect (Fig. 4b). Collectively, these findings (coupled with results obtained using metal-selective chelators) implicate Cu 2+ or Zn 2+ as the most relevant metal ions that interact with type 1 PrP 50 in prion diseased brain. Notably, the concentrations of Cu 2+ which we find effective in mamtaining type 1 PrP 50 conformation correlate closely with the 14 μM dissociation constant of Cu 2+ binding to recombinant full length hamster PrP 23 . Although in normal brain both Cu 2+ and Zn 2+ are present at much higher total concentrations compared to serum (discussed in references 23 ' 25 ), these metals would predominantly exist in protein complexes rather than as free ions. While Zn 2+ can attain transient extracellular total concentrations as high as 300 μM in brain during sustained neuronal activity 26 , the proportion that exists as free ions is uncertain. In the case of Cu 2+ , micro-molar levels of free ions in any cell compartment seems highly unlikely in the physiological state, and it thus remains to be demonstrated how PrP c might acquire Cu 2+ in vivo. From our findings however, the pathological relevance of metal ion binding to PrP 50 is clear, PrP 50 type 1 and 2 are isolated from diseased brain in metal occupied form. These findings could suggest that the concentrations of Cu 2+ and Zn 2+ in prion-diseased brain are grossly perturbed. This has recently been demonstrated to be the case in Alzheimer's disease, where copper, zinc and iron are highly concentrated within the periphery and core of senile plaque deposits 27 . Moreover, micromolar concentrations of Cu 2+ and Zn 2+ can induce dramatic aggregation of amyloid Aβ protein 25 . In the latter study, at total concentrations of metal ions found in serum, only Cu 2+ and Zn 2+ were able to induce aggregation of Aβ protein, however, at supra-physiological concentrations (30 μM) Ni 2+ and Co 2+ were also effective. We have also tested the effectiveness of 30 μM Ni 2+ , Co 2+ and Mn 2+ in maintaining type 1 PrP 50 conformation, and find that at this concentration only Ni 2+ can effectively substitute for Cu 2+ or Zn 2+ (Fig. 4c). These findings further reinforce our deduction that Cu 2+ and Zn 2+ are likely to be the most important metal ions that interact with PrP 50 in prion diseased brain. 4. Inter-conversion of types 1 and 2 human PrP 50 Interestingly, whereas type 1 PrP 50 conformation could be readily maintained in the presence of 10 μM Zn 2+ , higher concentrations of Cu 2+ were required to have the same effect. We examined a range of Cu 2+ concentrations (10-25 μM) and at 20 μM were able to observe a pattern of cleavage products which migrated with a mobility similar to that of the type 2 products, that is intermediate between type 1 and type 2 " (compare Fig. 4a, lanes 6 - 8). This intermediate pattern can also be discerned after digestion of type 1 PrP 50 in the presence of the copper-selective chelators EGTA or friethyleneteframine (Fig. 3e and f). or after washing and digestion of type 1 PrP 50 in the presence of 30μM Co 2+ (Fig. 4c). As the mobility of these intermediate fragments closely resemble type 2 cleavage products, these findings suggest that the conformations of type 1 PrP So and type 2 PrP 50 differ principally with respect to the relative occupancy of their metal binding sites. In order to study this further we examined the effects of applying exogenous metals to type 2 PrP 50 . Consistent with findings for type 1 PrP 50 , washing insoluble aggregates of type 2 PrP 50 with buffer alone gave type 2 " cleavage products (Fig. 4d). However, in the maintained presence of different concentrations of Cu 2+ or Zn 2+ , we observed either the original type 2 pattern of digestion products, or a new pattern of higher molecular mass cleavage fragments closely similar to those generated from untreated type 1 PrP 50 (Fig. 4d). These findings imply that the conformations of type 1 PrP 50 and type 2 PrP 50 are interchangeable and depend on the level of occupancy with these metals. Discussion The demonstration that phenotypically distinct types of CJD are associated with the biochemically distinct types 1 and 2 PrP 50 clarifies earlier confusion on classification of CJD sub-types 18 . The precise aetiology of sporadic CJD remains obscure. The spontaneous conversion of PrP c to PrP 50 as a rare stochastic event, or somatic mutation of the PrP gene, resulting in expression of a pathogenic PrP mutant 12 , are plausible explanations. However, other causes, including environmental exposure to human or animal prions is not ruled out by epidemiological studies 28 as a cause of at least some cases. "Sporadic" CJD may have multiple aetiologies. These findings immediately allow a more precise molecular classification of human prion disease, with important implications for epidemiological smdies into the aetiology of sporadic CJD. Re-analysis of epidemiological data using these molecular sub-types may reveal important risk factors obscured when sporadic CJD is analysed as a single entity. These findings also elucidate a potential molecular mechanism for strain variation. The ability of metal ions to directly influence PrP 50 conformation has widespread implications for understanding strain diversity in human and animal prion diseases. This demonstration of an interaction between PrP 50 and Cu 2+ not only supports recent work indicating that Cu 2+ may stabilise PrP 50 conformation 29 , but provides further evidence suggesting that the neuropathology of prion diseases may be related to abnormalities in copper-metabolism 22 ' 30"32 . The present work suggests that drugs which influence copper metabolism may have therapeutic potential in prion disease. 5. Exemplary pharmaceutical formulations of the invention The formulations may conveniently be presented in unit dosage form and may be prepared by any of the methods well known in the art of pharmacy. Such methods include the step of bringing into association the active ingredient (ie agent which affects the binding of divalent metal ions to PrPSc) with the carrier which constitutes one or more accessory ingredients. In general the formulations are prepared by uniformly and intimately bringing into association the active ingredient with liquid carriers or finely divided solid carriers or both, and then, if necessary, shaping the product. Whilst it is possible for an agent eg compound of the invention to be administered alone, it is preferable to present it as a pharmaceutical formulation, together with one or more acceptable carriers. The carrier(s) must be "acceptable" in the sense of being compatible with the agent of the invention and not deleterious to the recipients thereof. Typically, the carriers will be water or saline which will be sterile and pyrogen free. Formulations in accordance with the present invention suitable for oral administration may be presented as discrete units such as capsules, cachets or tablets, each containing a predetermined amount of the active ingredient; as a powder or granules; as a solution or a suspension in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion or a water-in- oil liquid emulsion. The active ingredient may also be presented as a bolus, electuary or paste. A tablet may be made by compression or moulding, optionally with one or more accessory ingredients. Compressed tablets may be prepared by compressing in a suitable machine the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder (eg povidone, gelatin, hydroxypropylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (eg sodium starch glycolate, cross-linked povidone, cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent. Moulded tablets may be made by moulding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent. The tablets may optionally be coated or scored and may be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxypropylmethylcellulose in varying proportions to provide desired release profile. Formulations suitable for topical administration in the mouth include lozenges comprising the active ingredient in a flavoured basis, usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouth- washes comprising the active ingredient in a suitable liquid carrier. Formulations suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in a freeze-dried (lyophilised) condition requiring only the addition of the sterile liquid carrier, for example water for injections, immediately prior to use. Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets of the kind previously described. Preferred unit dosage formulations are those containing a daily dose or unit, daily sub-dose or an appropriate fraction thereof, of an active ingredient. It should be understood that in addition to the ingredients particularly mentioned above the formulations of this invention may include other agents conventional in the art having regard to the type of formulation in question, for example those suitable for oral administration may include flavouring agents. The following examples illustrate pharmaceutical formulations according to the invention in which the active ingredient is selected from one or more of antibodies and agents eg compounds of the invention: Example A: Tablet Active ingredient 100 mg Lactose 200 mg Starch 50 mg Polyvinylpyrrolidone 5 mg Magnesium stearate 4 mg 359 mg Tablets are prepared from the foregoing ingredients by wet granulation followed by compression. Example B: Ophthalmic Solution Active ingredient 0.5 g Sodium chloride, analytical grade 0.9 g Thiomersal 0.001 g Purified water to 100 ml pH adjusted to 7.5 Example C: Tablet Formulations The following formulations A and B are prepared by wet granulation of the ingredients with a solution of povidone, followed by addition of magnesium stearate and compression. Formulation A mg/tablet mg/tablet (a) Active ingredient 250 250 (b) Lactose B.P. 210 26 (c) Povidone B.P. 15 9 (d) Sodium Starch Glycolate 20 12 (e) Magnesium Stearate 5 3 500 300 Formulation B mg/tablet i Tig/tablet (a) Active ingredient 250 250 (b) Lactose 150 - (c) Avicel PH 101™ 60 26 (d) Povidone B.P. 15 9 (e) Sodium Starch Glycolate 20 12 (f) Magnesium Stearate 5 3 500 300 Formulation C mg/tablet Active ingredient 100 Lactose 200 Starch 50 Povidone 5 Magnesium stearate 4 359 The following formulations, D and E, are prepared by direct compression of the admixed ingredients. The lactose used in formulation E is of the direction compression type. Formulation D mg/capsule Active Ingredient 250 Pregelatinised Starch NF15 150 400 Formulation E mg/capsule Active Ingredient 250 Lactose 150 Avicel ™ 100 500 Formulation F (Controlled Release Formulation) The formulation is prepared by wet granulation of the ingredients (below) with a solution of povidone followed by the addition of magnesium stearate and compression. mg/tablet (a) Active Ingredient 500 (b) Hydroxypropylmethylcellulose 112 (Methocel K4M Premium)™ (c) Lactose B.P. 53 (d) Povidone B.P.C. 28 (e) Magnesium Stearate 7 700 Drug release takes place over a period of about 6-8 hours and is generally complete after 12 hours. Example D: Capsule Formulations Formulation A A capsule formulation is prepared by achnixing the ingredients of Formulation D in Example C above and filling into a two-part hard gelatin capsule. Formulation B (infra) is prepared in a similar manner. Formulation B mg/capsule (a) Active ingredient 250 (b) Lactose B.P. 143 (c) Sodium Starch Glycolate 25 (d) Magnesium Stearate 2 420 Formulation C mg/capsule (a) Active ingredient 250 (b) Macrogol 4000 BP 350 600 Capsules are prepared by melting the Macrogol 4000 BP, dispersing the active ingredient in the melt and filling the melt into a two-part hard gelatin capsule. Formulation D mg/capsule Active ingredient 250 Lecithin 100 Arachis Oil 100 450 Capsules are prepared by dispersing the active ingredient in the lecithin and arachis oil and filling the dispersion into soft, elastic gelatin capsules. Formulation E (Controlled Release Capsule) The following controlled release capsule formulation is prepared by extruding ingredients a, b, and c using an extruder, followed by spheromsation of the extrudate and drying. The dried pellets are then coated with release-controlling membrane (d) and filled into a two-piece, hard gelatin capsule. mg/capsule (a) Active ingredient 250 (b) Microcrystalline Cellulose 125 (c) Lactose BP 125 (d) Ethyl Cellulose 13 513 Example E: Injectable Formulation Active ingredient 0.200 g Sterile, pyrogen free phosphate buffer (pH7.0) to 10 ml The active ingredient is dissolved in most of the phosphate buffer (35- 40 °C), then made up to volume and filtered through a sterile micropore filter into a sterile 10 ml amber glass vial (type 1) and sealed with sterile closures and overseals. Example F: Intramuscular injection Active ingredient 0.20 g Benzyl Alcohol 0.10 g Glucofurol 75™ 1.45 g Water for Injection q.s. to 3.00 ml The active ingredient is dissolved in the glycofurol. The benzyl alcohol is then added and dissolved, and water added to 3 ml. The mixtare is then filtered through a sterile micropore filter and sealed in sterile 3 ml glass vials (type 1). Example G: Syrup Suspension Active ingredient 0.2500 g Sorbitol Solution 1.5000 g Glycerol 2.0000 g Dispersible Cellulose 0.0750 g Sodium Benzoate 0.0050 g Flavour, Peach 17.42.3169 0.0125 ml Purified Water q.s. to 5.0000 ml The sodium benzoate is dissolved in a portion of the purified water and the sorbitol solution added. The active ingredient is added and dispersed. In the glycerol is dispersed the thickener (dispersible cellulose). The two dispersions are mixed and made up to the required volume with the purified water. Further thickening is achieved as required by extra shearing of the suspension. Example H: Suppository mg/suppository Active ingredient (63 μm)* 250 Hard Fat, BP (Witepsol H15 - Dynamit Nobel) 1770 2020 *The active ingredient is used as a powder wherein at least 90% of the particles are of 63 μm diameter or less. One fifth of the Witepsol H15 is melted in a steam-jacketed pan at 45 °C maximum. The active ingredient is sifted through a 200 μm sieve and added to the molten base with mixing, using a silverson fitted with a cutting head, until a smooth dispersion is achieved. Maintaining the mixture at 45 °C, the remaining Witepsol H15 is added to the suspension and stirred to ensure a homogenous mix. The entire suspension is passed through a 250 μm stainless steel screen and, with continuous stirring, is allowed to cool to 40°C. At a temperature of 38°C to 40°C 2.02 g of the mixture is filled into suitable plastic moulds. The suppositories are allowed to cool to room temperature. Example I: Pessaries mg/pessary Active ingredient 250 Anhydrate Dextrose 380 Potato Starch 363 Magnesium Stearate 7 1000 The above ingredients are mixed directly and pessaries prepared by direct compression of the resulting mixture. 6. Use in medicine The aforementioned pharmaceutical formulations and other formulations of the invention of agents which are capable of affecting the binding of divalent metal ions to PrPSc may be administered in a variety of ways, for non- limiting example, by any conventional method including oral and parenteral (eg subcutaneous or intramuscular) injection. The treatment may consist of a single dose or a plurality of doses over a period of time, depending on the characteristics of the patient and/or the particular prion disease against which the treatment is directed. The ability of the agents of the invention to alter the conformation of PrP 50 may be especially important for inherited prion disease. That is, early diagnosis of inherited mutation through prion gene analysis from blood samples may allow therapeutic intervention, for example administration of agents which do not favour the type 1 PrP 50 on conformation eg divalent metal ion chelators, especially Cu 2+ and/or Zn 2+ chelators, if genetic predisposition to type 1 and/or type 2 PrP 50 propagation is indicated. 7. Test Kit Preferred components of a test kit may include:- (i) Buffer solution of 25 mM N-ethylmorpholine buffer pH 7.4 containing 0.5% w/v NP-40 (ii) Stock solution of 250 mM EDTA prepared in water and titrated to pH 8.0 with NaOH (iii) lmg/ml stock proteinase K prepared in water (iv) 2 x SDS sample buffer (125mM Tris-HCl, 20% v/v glycerol pH 6.8 containing 4% w/v SDS, 4% v/v 2-mercaptoethanol, 8mM 4- (2-aminoethyl)-benzene sulfonyl fluoride and 0.02% w/v bromephenol blue) 8. Use of test kit Prion diseased brain tissue is prepared as a 10% w/v homogenate in 25 mM N-ethylmorpholine buffer pH 7.4 containing 0.5% w/v NP-40. Aliquots of the samples are treated with proteinase K (50 μg/ml final for lh at 37°C) either before or after adjustment with 250 mM EDTA pH 8.0 stock solution to give 20 mM final concentration of EDTA in the sample. Following digestion with proteinase K, samples are diluted with an equal volume of 2X SDS sample buffer and heated at 99°C for 10 min. Samples are the subjected to SDS polyacrylamide gel electrophoresis. A change in the relative molecular mass of digestion products after treatment with EDTA is indicative of type 1 or type 2 PrP 50 . References 1. Will, R.G. et al. A new variant of Creutzfeldt- Jakob disease in the UK. Lancet 347, 921-925 (1996). 2. Collinge, J., Sidle, K.C.L., Meads, J., Ironside, J. & Hill, A.F. Molecular analysis of prion strain variation and the aetiology of 'new variant' CJD. Nature 383, 685-690 (1996). 3. Bruce, M.E. et al. Transmissions to mice indicate that 'new variant' CJD is caused by the BSE agent. Nature 389, 498-501 (1997). 4. Hill, A.F. et al. The same prion strain causes vCJD and BSE. Nature 389, 448-450 (1997). 5. Prusiner, S.B. Molecular Biology of Prion Diseases. Science 252, 1515- 1522 (1991). 6. Pan, K.-M. et al. Conversion of α-helices into β-sheets features in the formation of the scrapie prion proteins. Proc. Nat I. Acad. Sci. USA 90, 10962-10966 (1993). 7. Riek, R. et al. NMR structure of the mouse prion protein domain PrP (121-231). Nature 382, 180-182 (1996). 8. Bessen, R.A. & Marsh, R.F. Distinct PrP properties suggest the molecular basis of strain variation in transmissible mink encephalopathy. J. Virol. 68, 7859-7868 (1994). 9. Bessen, R.A. et al. Non-genetic propagation of strain-specific properties of scrapie prion protein. Nature 375, 698-700 (1995). 10. Telling, G.C. et al. Evidence for the conformation of the pathologic isoform of the prion protein enciphering and propagating prion diversity. Science 274, 2079-2082 (1996). 11. Caughey, B., Raymond, G.J. & Bessen, R.A. Strain-dependent differences in β-sheet conformations of abnormal prion protein. J. Biol. Chem. 273, 32230-32235 (1998). 12. Collinge, J. Human prion diseases and bovine spongiform encephalopathy (BSE). Hum. Mol. Genet. 6, 1699-1705 (1997). 13. Collinge, J., Palmer, M.S. & Dryden, A.J. Genetic Predisposition to Iatrogenic Creutzfeldt-Jakob disease. Lancet 337, 1441-1442 (1991). 14. Palmer, M.S., Dryden, A.J., Hughes, J.T. & Collinge, J. Homozygous prion protein genotype predisposes to sporadic Creutzfeldt-Jakob disease. Nature 352, 340-342 (1991). 15. Collinge, J., Beck, J., Campbell, T., Estibeiro, K. & Will, R.G. Prion protein gene analysis in new variant cases of Creutzfeldt-Jakob disease. Lancet 348, 56 (1996). 16. Hill, A.F. et al. Investigation of variant Creutzfeldt-Jakob disease and other human prion diseases with tonsil biopsy samples. Lancet 353, 183- 189 (1999). 17. Parchi, P. et al. Molecular basis of Phenotypic Variability in Sporadic Creutzfeldt-Jakob Disease. Ann. Neurol. 39, 767-778 (1996). 18. Parchi, P. et al. Typing prion isoforms. Nature 386, 232-233 (1997). 19. Hornshaw, M.P., McDermott, J.R. & Candy, J.M. Copper binding to the N-terminal tandem repeat regions of mammalian and avian prion protein. Biochem. Biophys. Res. Commun. 207, 621-629 (1995). 20. Hornshaw, M.P., McDermott, J.R., Candy, J.M. & Lakey, J.H. Copper binding to the N-terminal tandem repeat region of mammalian and avian prion protein: Structural studies using synthetic peptides. Biochem. Biophys. Res. Commun. 214, 993-999 (1995). 21. Miura, T., Hori-i, A. & Takeuchi, H. Metal-dependent α-helix formation promoted by the glycine-rich octapeptide region of prion protein. EEBS Lett. 396, 248-252 (1996). 22. Brown, D.R. et al. The cellular prion protein binds copper in vivo. Nature 390, 684-687 (1997). 23. Stockel, J., Safar, J., Wallace, A.C., Cohen, F.E. & Prusiner, S.B. Prion protein selectively binds copper(II) ions. Biochemistry 37, 7185-7193 (1998). 24. Viles, J.H. et al. Copper binding to the prion protein: Structural implications of four identical cooperative binding sites. Proc. Natl. Acad. Sci. USA 96, 2042-2047 (1999). 25. Atwood, C.S. et al. Dramatic aggregation of Alzheimer Aβ by Cu(II) is induced by conditions representing physiological acidosis. /. Biol. Chem. 273, 12817-12826 (1998). 26. Assaf, S.Y. & Chung, S.-H. Release of endogenous Zn 2+ from brain tissue during activity. Nature 308, 734-736 (1984). 27. Lovell, M.A. et al. Copper, iron and zinc in Alzheimer's disease senile plaques. J. Neurol. Sci 158, 47-52 (1998). 28. Collins, S. et al. Surgical treatment and risk of sporadic Creutzfeldt-Jakob disease: a case-control study. Lancet 353, 693-697 (1999). 29. McKenzie, D. et al. Reversibility of scrapie inactivation is enhanced by copper. J. Biol. Chem. 273, 25545-25547 (1998). 30. Carlton, W.W. Spongiform encephalopathy induced in rats and guinea pigs by cuprizone. Exp. Mol. Pathol. 10, 274-287 (1969). 31. Pattison, I.H. & Jebbett, J.N. Histopathological similarities between scrapie and cuprizone toxicity in mice. Nature 230, 115-117 (1971). 32. Pauly, P.C. & Harris, D.A. Copper stimulates endocytosis of the prion protein. J. Biol. Chem. 273, 33107-33110 (1998). 33. Dawson, R.M.C., Elliott, D.C, Elliott, W.H. & Jones, K. M. Eds. Stability constants of metal complexes. In: Data for biochemical research, 3 rd edition, Clarendon Press, Oxford, 399-415 (1986).

Claims: CLAIMS: 1. A method suitable for typing PrP 50 comprising the steps of: (i) providing a sample containing PrP 50 protein; (ii) treating the sample to remove one or more bound metal ions from PrP 501 (iii) subsequently digesting the PrP 50 protein; (iv) comparing the products of the digestion with the products of a control method in which the sample is not treated to remove bound metal ions to determine whether or not the products are the same or different; a difference being indicative of the presence of type 1 or type 2 Pri 550 and no difference being indicative of type 3 or type 4 PrP 50 . 2. A method as claimed in Claim 1 wherein the protein is digested with proteinase K. 3. A method as claimed in Claim 1 or 2 wherein step (ii) involves treating the sample with a metal chelator. 4. A method as claimed in Claim 3 wherein the chelator chelates divalent metal ions. 5. A method as claimed in Claim 4 wherein the divalent metal ions are Cu 2+ and/or Zn 2+ . 6. A method as claimed in Claim 4 or 5 wherein the metal chelator is capable of chelating both Cu 2+ and Zn 2+ . 7. A method as claimed in any one of Claims 3 to 6 wherein the metal chelator is EDTA. > 8. A method as claimed in Claim 7 wherein the EDTA is present at a concentration of from about 15-20 mM. 9. A method as claimed in Claim 1 wherein step (ii) involves washing the PrPSc sample with a buffer, preferably a morpholine buffer. 10. A method as claimed in any one of the preceding claims wherein the digestion products migrate with a lower apparent molecular mass than either type 1 or type 2 PrPSc when subjected to electrophoresis under the same conditions. 11. A method as claimed in Claim 10 wherein a reduction in apparent molecular mass of 1.1 ± 0.3 kDa (mean ± SD; n=9) is indicative of type 1 PrP Sc . 12. A method as claimed in Claim 10 wherein a reduction in apparent molecular mass of 0.65 ± 0.3 kDa (mean ± SD; n = 9) is indicative of type 2 PrPSc. 13. A method of altering the conformation of PrPSc comprising treating PrPSc with an agent which affects the binding of PrPSc to one or more divalent metal ions. 14. Use of an agent capable of affecting the binding of PrPSc to one or more divalent metal ions in the manufacture of a composition for use in the prevention, treatment and/or diagnosis of a prion disease. 15. Use as claimed in Claim 14 wherein the agent affects the binding of Zn 2+ and/or Cu 2+ ions to PrP Sc . 16. Use as claimed in Claim 15 wherein the agent affects the binding of Cu 2+ ions to PrP Sc . 17. A method or use as claimed in any of Claims 13 or 15 wherein the agent promotes binding of one or more divalent metal ions, preferably Cu 2+ and/or Zn 2+ to PrP Sc . 18. A method or use as claimed in any of Claims 13 to 15 wherein the agent removes one or more bound divalent metal ions, preferably Cu 2+ and/or Zn 2+ ions from PrPSc. 19. A method or use as claimed in Claim 18 wherein the agent is selected from one or more of penicillamine, trientine dihydrochloride and/or dimercaprol. 20. A method or use as claimed in Claim 17 wherein the agent is a copper supplement. 21. A method as claimed in Claim 13 wherein the PrPSc conformation is altered from type 1 to type 2 PrPSc or type 2 * PrP 50 . 22. A method as claimed in any one of Claims 1 to 12 wherein the digestion products of the control are compared with one or more standard samples of known PrPSc type to identify the PrPSc type in the control and sample. 23. A method as claimed in any one of the preceding claims wherein the sample consists of or comprises a bodily fluid or tissue, such as blood or a derivative of blood such as plasma, lymphoid tissue (such as tonsils, appendices, lymph nodes, spleen) or brain, or cerebrospinal fluid, faeces, urine or sputum. 24. A method of screening for an agent capable of altering the conformation of type 1 and/or type 2 PrP 50 comprising exposing type 1 and/or type 2 PrP 50 to the agent; subsequently digesting the PrP 50 and comparing the digestion products with the products produced by digestion under the same conditions of type 1 and/or type 2 PrP So not exposed to the agent; a difference being indicative of a change in the conformation of type 1 and/or type 2 PrP 50 . 25. A method as claimed in Claim 24 wherein the difference is a reduction in the apparent molecular mass of the digestion products compared to the products of the digestion of type 1 and/or type 2 PrP 50 not exposed to the agent. 26. A method of screening for an agent for use in the diagnosis prevention and/or treatment of a prion disease comprising testing an agent for its ability to convert type 1 PrPSc to type 2 PrPSc or type 2 " PrP 50 or vice versa and/or type 2 PrP 50 to type 2 " PrP 50 or vice versa. 27. Use of an agent obtainable by a method as claimed in any one of Claims 24 to 26 in the diagnosis, prevention and/or treatment of a prion disease, or in the manufacture of a composition for use in diagnosing, preventing and/or treating such a disease. 28. A method as claimed in any one of the preceding claims wherein the PrP 50 is human. 29. A method suitable for typing PrP 50 substantially as described herein, preferably with reference to one or more of the methods, examples and/or figures. 30. A method of altering the conformation of PrP 50 substantially as described herein, preferably with reference to one or more of the methods, examples and/or figures. 31. Use of an agent capable of affecting the binding of PrP 50 to one or more divalent metal ions in the diagnosis, prevention and/or treatment of a prion disaese substantially as described herein, preferably with reference to one or more of the methods, examples and/or figures. 32. A method of screening for an agent substantially as described herein, preferably with reference to one or more of the methods, examples and/or figures. 33. A kit comprising means for carrying out any of the methods of Claims 1 to 13, 17 to 30 or 32. 34. Isolated PrP 50 type 2 " , which when digested produces substantially the same digestion products as type 1 and/or type 2 PrP 50 which have been treated prior to digestion to remove one or more bound metal ions. 35. Isolated PrP 50 type 2 " as claimed in Claim 35 wherein the digestion products migrate with a lower apparent molecular mass than either type 1 or type 2 PrP 50 when subjected to electrophoresis under the same conditions. 36. Use of isolated PrP 50 type 2 " in the manufacture of a medicament for use in the manufacture of a composition for use in the diagnosis, prevention and/or treatment of a prion disease. 37. Any novel subject-matter disclosed herein.

Inventors: COLLINGE JOHN, WADSWORTH JONATHAN DAVID FRANK, COLLINGE, JOHN, WADSWORTH, JONATHAN, DAVID, FRANK
Applicants: COLLINGE JOHN, IMP COLLEGE INNOVATIONS LTD, WADSWORTH JONATHAN DAVID FRANK, COLLINGE, JOHN, IMPERIAL COLLEGE INNOVATIONS LIMITED, WADSWORTH, JONATHAN, DAVID, FRANK
Application year: 2000
Main classification: G01N33
IPC codes: A61K31, A61K45, A61P25, C07K14, C12Q1, G01N33