MONOCLONAL ANTIBODIES SPECIFIC FOR STREPTOCOCCUS MUTANS, AND USES THEREOF

Abstract: The invention describes three monoclonal IgG antibodies, referred to as SWLA1, SWLA2, and SWLA3, which appear to recognize a species-specific lipooligosaccharide or lipopolysaccharide on the cell surface of S.mutans. The invention also describes a rapid method of detection of S.mutans without the need for prior growth of the bacteria in culture. The invention further describes method of utilizing these antibodies for rapidly quantitatively detecting S.mutans. These methods are sensitive enough to detect the presence of a single S.mutans bacterial cell. These methods can be widely used in the clinical diagnosis and treatment of dental caries in humans.

Description: M0N0CL0NAL ANTIBODIES SPEC IFIC FOR STREPTOCOCCUS MUTANS , AND USES THEREOF by 5 Wenyuan Shi & Wyatt Rory Hume CROSS-REFERENCES 10 This application claims priority from a United States provisional application, United States Application Serial No. 60/102,179, filed September 28, 1998. BACKGROUND OF THE INVENTION 15 The present invention relates to novel antibodies to the Streptococcus mutatis bacteria that are naturally found in the mouth, and play a role in the development of dental caries. The invention relates to methods of detection of S. mutans using the antibodies of the invention or fragments or derivatives thereof. The 20 invention also relates to diagnosing, monitoring, treating and protecting the teeth from dental caries using the antibodies of the invention or fragments or derivatives thereof. Throughout this application, various publications are referenced within parentheses and cited at the end of the application. The disclosures of these 5 publications are hereby incorporated by reference herein in their entireties. Currently human dental caries, or cavities, are detected by changes in translucency, color, hardness or X-ray density of teeth. These technologies have limitations both in specificity and reproducibility. Further, they do not show, at a 30 single time point, whether or not the disease is active. The bacterium Streptococcus mutans, or S. mutans (named and described by Clark in 1924) is known to be a prime etiologic agent for the initiation and progression of human dental caries. (Fitzgerald and Keyes. 1960; Loesche, 1982; Loesche, 1986; Tanzer, 1997). S. mutans is one of the primary factors in acid dissolution of the apatite (mineral) component of the enamel then the dentin, or of the cementum then the dentin. A strong correlation between the proportion of S. mutans in dental plaque or in saliva relative to other bacterial species and the presence or risk of future outbreaks of dental caries has been documented, (Tanzer, 1997; Krasse, 1988). Therefore, S. mutans in plaque or saliva can serve as an index for both caries activity state and caries risk or susceptibility (Loesche et al.. 1975: Ellen, 1976; Krasse. 1985; Krasse, 1988). These indices play an increasingly important role in the diagnosis and treatment of dental caries (Hume, 1993; Mundorff et al.. 1993; Van Houte. 1993). Present techniques of detection and quantitative determination of S. mutans include bacterial culture with selective media using either broth or agar plate systems (Ellen, 1976; Loesche, 1982) and polymerase chain reaction techniques (Igarashi et al, 1996). Each of these methods requires significant time (on the order of days), well trained personnel and sophisticated equipment to perform. Consequently, existing techniques are relatively expensive and time consuming. Alternatively, monoclonal antibody based detection methods allow a rapid and accurate, yet economic quantitative measurement of the presence of bacterial cells, and have significant advantages compared to traditional culture sensitivity assays or polymerase chain reaction (PCR) techniques. Bacteria produce unique polysaccharide structures of lipoougosaccharide or Hpopolysaccharide or other polysaccharides, among a large range of other chemical components and products, on their cell surfaces. Monoclonal antibodies can be raised against these chemical structures, using standard hybridoma techniques (Kohler and Milstein, 1975). The sensitivity and accuracy of this method is largely dependent on the specificity of the monoclonal antibody produced. By making and screening large numbers of hybrid cell lines, one can find certain monoclonal antibodies which are species-specific for the desired bacteria, i.e. the monoclonal antibodies ICL 1 1 and ICL12 recognize the 0139 antigen of Vibrio cholerae (Hasan, 1994)). These monoclonal antibodies can be linked to various detection systems including, for example, fluorescent reagents, colorimetric reagents or coagglutination reagents. The resulting labeled antibodies can specifically bind to the desired bacterium in any sample, and rapidly present the result through the linked detection systems (Harlow and Lane, 1988). TABLE 1 Due to overwhelming advantages, monoclonal antibody-based detection methods have been widely used in medical microbiology. At present, there are nearly one hundred different monoclonal antibody based detection methods available to diagnose various pathogenic bacteria. However, to date there have been no such methods available for the detection of dental caries. While other investigators have made monoclonal antibodies to S mutans, these monoclonal antibodies are not suited for diagnostic or clinical uses because they are not species specific for S. mutans and cannot detect the presence of S. mutans at very low levels. Almost all previous monoclonal antibodies were made against surface proteins of S. mutans (i.e. glucosyltransferase, agglutinin, surface antigen PI, etc.). Similar proteins can also be found on other Streptoccocci species. Thus, these monoclonal antibodies can not be used to distinguish S mutans from other Streptoccocci species. To diagnose dental caries it is important to be able to discern the S. mutans strain from other bacteria that may be present. One needs to find a monoclonal antibody that is specific for a unique epitope specific to the S mutans cell surface. SUMMARY OF THE INVENTION Accordingly, the invention describes three monoclonal IgG antibodies, referred to as SWLA1, SWLA2, and SWLA3, which appear to recognize a species- specific polysaccharide on the cell surface of S. mutans. The invention also describes a rapid method of detection of S. mutans without the need for prior growth of bacteria in culture. The invention further describes methods of utilizing these antibodies for rapidly quantitatively detecting S. mutans. These methods are sensitive enough to detect the presence of a single S. mutans bacteria cell. These methods can be widely used in the clinical diagnosis and treatment of dental caries. Yet another embodiment of the invention is a diagnostic kit containing the monoclonal antibodies of the invention and reagents for detecting binding of the antibodies to S. mutans cells on teeth in or in a sample from a subject. In particular, one aspect of the present invention is a monoclonal antibody that specifically binds an antigen on the surface of Streptococcus mutans and which is the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12559, and which is designated SWLAl. Another aspect of the present invention is a monoclonal antibody that specifically binds an antigen on the surface of S. mutans and which is the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12560, and which is designated SWLA2. Yet another aspect of the present invention is a monoclonal antibody that specifically binds an antigen on the surface of S. mutans and which is the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12258, and which is designated SWLA3. BRIEF DESCRIPTION OF THE DRAWINGS The following invention will become better understood with reference to the specification, appended claims, and accompanying drawings, where: Figure 1 shows the detection of S. mutans SWLAl with fluorescence microscopy; the S. mutans cells (ATCC25175) were labeled as described in Example 1, infra; 1(a) shows a regular phase-contrast light microscope image of a bacteria mixture containing S. rattus, S. gordonii, S. mitis, S. sanguis, E. coll, and S. mutans with FITC conjugated monoclonal antibodies; 1(b) shows the same group of bacteria under fluorescent lighting; the bright spots are all S. mutans, indicating that the SWLAl monoclonal antibody specifically recognizes S. mutans. Figure 2 shows flow cytometry analysis of S. mutans SWLAl, as described in example 1, infra; 2(a) shows S. mutans (ATCC25175) without SWLAl and FICT-linked goat-anti-mouse IgG antibody; 2(b) shows S. mutans with SWLAl and FICT-linked goat-anti-mouse IgG antibody; 2(c) shows F. nucleatum (ATCC25586) without SWLAl and FICT-linked goat-anti-mouse IgG antibody; 2(d) shows F. nucleatum with SWLAl and FICT-linked goat-anti-mouse IgG antibody; 2(e) shows T. denticola (ATCC33520) without SWLAl and FICT-linked goat-antibody mouse IgG antibody; 2(f) shows T. denticola with SWLAl and FICT-linked goat-anti-mouse IgG antibody; F is the area containing bacterial particles labeled with FITC-linked monoclonal antibody. DETAILED DESCRIPTION OF THE INVENTION The invention describes three species-specific monoclonal IgG antibodies, referred to as SWLAl, SWLA2, and SWLA3, which recognize a species- specific epitope on the cell surface of S. mutans, and conjugates thereof, which appears to be a species-specific polysaccharide. The invention includes methods of using the monoclonal antibodies to detect quantity and presence of S. mutans to monitor the onset and severity of dental caries. The monoclonal antibodies SWLAl, SWLA2, and SWLA3 can be prepared by hybridoma fusion techniques or by techniques that utilize EBV- immortalization technologies. Hybridoma fusion techniques were first introduced by Kohler and Milstein (see, Kohler and Milstein, (1975); Brown et al., (1981); Brown et al., (1980); Yeh et al., (1976); and Yeh et al, (1982)). These techniques involve the injection of an immunogen (e.g., purified antigen or cells or cellular extracts carrying the antigen) into an animal (e.g., a mouse) so as to elicit a desired immune response (i.e., production of antibodies) in that animal. For example, S. mutans may be used as the immunogen. In the illustrative example herein, S. Mutans strain ATCC25175 was used as the immunogen. The cells are injected repeatedly, for example, into a mouse and, after a sufficient time, the mouse is sacrificed and somatic antibody-producing cells are obtained. The use of other mammalian models, for example rat, rabbit and frog somatic cells, is also possible. The cell chromosomes encoding desired immunoglobulins are immortalized by fusing them with myeloma cells, generally in the presence of a fusing agent such as polyethylene glycol (PEG). Any of a number of myeloma cell lines may be used as a fusion partner according to standard techniques; for example, the P3-NSI/l-Ag4-l, P3-x63-Ag8.653 or Sp2/0-Agl4 myeloma lines. These myeloma lines are available from the American Type Culture Collection (ATCC), in Rockville, Maryland. The resulting cells, which include the desired hybridomas, are then grown in a selective medium, such as HAT medium, in which unfused parental myeloma or lymphocyte cells eventually die. Only the hybridoma cells survive and can be grown under limiting dilution conditions to obtain isolated clones. The supernatants of the hybridomas are screened for the presence of antibody of the desired specificity, e.g., by immunoassay techniques using the antigen that has been used for immunization. Positive clones can then be subcloned under limiting dilution conditions and the monoclonal antibody produced can be isolated. Various conventional methods exist for isolation and purification of the monoclonal antibodies so as to free them from other proteins and other contaminants. Commonly used methods for purifying monoclonal antibodies include ammonium sulfate precipitation, ion exchange chromatography, and affinity chromatography (Zola et al. (1982)). Hybridomas produced according to these methods can be propagated in vitro or in vivo (in ascites fluid) using techniques known in the art (see, generally, Fink et al., supra, 1984). Generally, the individual cell line may be propagated in vitro, for example in laboratory culture vessels, and the culture medium containing high concentrations of a single specific monoclonal antibody can be harvested by decantation, filtration or centrifugation. Alternatively, the yield of monoclonal antibody can be enhanced by injecting a sample of the hybridoma into a histocompatible animal of the type used to provide the somatic and myeloma cells for the original fusion. Tumors secreting the specific monoclonal antibody produced by the fused cell hybrid develop in the injected animal. The body fluids of the animal, such as ascites fluid or serum, provide monoclonal antibodies in high concentrations. When human hybridomas or EBV-hybridomas are used, it is necessary to avoid rejection of the xenograft injected into animals such as mice. Immunodeficient or nude mice may be used or the hybridoma may be passaged first into irradiated nude mice as a solid subcutaneous tumor, cultured in vitro and then injected intraperitoneally into pristane primed, irradiated nude mice which develop ascites tumors secreting large amounts of specific human monoclonal antibodies. For certain therapeutic applications chimeric (mouse-human) or human monoclonal antibodies may be preferable to murine antibodies, because patients treated with mouse antibodies generate human antimouse antibodies. (Shawler et al., (1985)). Chimeric mouse-human monoclonal antibodies reactive with S. mutans can be produced, for example, by techniques developed for the production of chimeric antibodies (Oi et al., (1986); Liu et al., (1987)). Accordingly, genes coding for the constant regions of the SWLAl, SWLA2, or SWLA3 antibody molecule are substituted with human genes coding for the constant regions of an antibody with appropriate biological activity (such as the ability to selectively bind S. mutans). Novel antibodies of mouse or human origin can be also made that are analogous to the SWLAl, SWLA2, or SWLA3 antibody and that have the appropriate biological functions. These antibodies can have complementarity-determining regions (CDRs) that are identical to one of SWLAl, SWLA2, or SWLA3. Alternatively, these antibodies can bind an antigen on the surface of S. mutans and can compete at least about 80% as effectively on a molar basis with at least one of SWLAl , SWLA2, or SWLA3 as SWLAl, SWLA2, or SWLA3 for binding to the antigen on the surface of S. mutans. These antibodies have substantially no reactivity with any of the following bacterial strains: Streptococcus rattus ATCC19645, Streptococcus gordonii ATCC10558, Streptococcus gordonii ATCC13396, Streptococcus mitis ATCC49456, Streptococcus sobrinus ATCC33478, Streptococcus sobrinus 6715, Streptococcus sanguis ATCC10556, Streptococcus sanguis ATCC49295, Streptococcus anginosus ATCC33397, Lactobacillus acidophilus ATCC4356, Lactobacillus casei ATCC4646, Actinobacillus actinomycetemcomitans ATCC 33384, Porphyromonas gingivalis ATCC33277, Prevotella intermedia ATCC49046, Bacteroides forsythus ATCC43047, Eikenella corrodens ATCC23834, Fusobacterium nucleatum ATCC25586, Treponema denticola ATCC33520, Campylobacter rectus ATCC33238, Myxococcus xanthus DZ2, and Escherichia coli HB101. Preferably, the monoclonal antibody competes at least about 90% as effectively on a molar basis. For example, human monoclonal antibodies may be made by using the antigen, e.g. the portion of the polysaccharide on the cell surface of S. mutans, which binds the antibodies SWLAl, SWLA2, or SWLA3 of the invention, to sensitize human cells to the antigen in vitro followed by EBV-transformation or hybridization of the antigen-sensitized cells with mouse or human cells, as described by Borrebaeck et al. (1988). The antibodies of this invention were produced via hybridoma techniques. NSL/Ag4.1 mouse myeloma cell line was used as a fusion partner, and whole cells of type c S. muians strain ATCC25175 were used as the immunogen as described in the Example, infra. The hybridomas produced were screened. When this was performed three species-specific monoclonal antibodies against S. mutans were obtained designated SWLAl, SWLA2, and SWLA3. The hybridomas, producing the SWLAl, SWLA2, and SWLA3 antibodies, have been deposited with the ATCC, Rockville, Maryland, and are identified as follows: SWLAl Accession No.: HB-12559 SWLA2 Accession No.: HB-12560 SWLA3 Accession No.: HB-12558 The three monoclonal antibodies were found to be of the IgG subtype. Western blot and other biochemical analysis shows that they are against unique polysaccharide on cell surface of S. mutans. Western blot techniques are well known by one skilled in the art (Golub, E. S. and D. R. Green, 1991). These monoclonal antibodies are very different from the monoclonal antibodies found in the prior art. Those antibodies were made against surface proteins that are found on many other bacteria and not the species-specific polysaccharide, which the instant antibodies recognize. This difference makes the prior antibodies acceptable for research purposes but not diagnostic purposes (Carien and Olsson, 1995; Chia et al., 1993; Fukushima et al., 1993; Brady, et al., 1991). Due to the specificity for S. mutans, the monoclonal antibodies of this invention are particularly useful for diagnosis and treatment of human dental caries. Because the monoclonal antibody of the invention are able to detect low numbers of S. mutans cells in small samples they are able to be used to screening for S. mutans cells. These monoclonal antibodies also permit the development of simple and inexpensive dental caries detection methods that could be used for caries risk assessment at a dentist's chairside or in the patient's household. The most preferred antibodies will selectively bind to S. mutans and will not bind (or will bind weakly) to non- S. mutans bacteria. The antibodies that are particularly contemplated include monoclonal antibodies as well as fragments of monoclonal antibodies containing an S. mutans antigen-binding domain. The invention also encompasses antibody fragments that specifically recognize S. mutans. As used herein, an antibody fragment is defined as at least a portion of the immunoglobulin molecule which binds to its target, i.e., the antigen binding region on the S. mutans. This includes Fv, Fab, Fab' and F(ab)' 2 fragments of appropriate specificity. The invention further includes a human monoclonal antibody that specifically binds an antigen found on the surface of S. mutans. The antigen that is bound is one of those bound by at least one of the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12559 and designated SWLAl, the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12560 and designated SWLA2, and the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12558 and designated SWLA3. The human monoclonal antibody has substantially no reactivity with any of the following bacterial strains: Streptococcus rattus ATCC 19645, Streptococcus gordonii ATCC10558, Streptococcus gordonii ATCC13396, Streptococcus mitis ATCC49456, Streptococcus sobrinus ATCC33478, Streptococcus sobrinus 6715, Streptococcus sanguis ATCC10556, Streptococcus sanguis ATCC49295, Streptococcus anginosus ATCC33397, Lactobacillus acidophilus ATCC4356, Lactobacillus casei ATCC4646, Actinobacillus actinomycetemcomitans ATCC 33384, Porphyromonas gingivalis ATCC33277, Prevotella intermedia ATCC49046, Bacteroides forsythus ATCC43047, Eikenella corrodens ATCC23834, Fusobacterium nucleatum ATCC25586, Treponema denticola ATCC33520, Campylobacter rectus ATCC33238, Myxococcus xanthus DZ2, and Escherichia coli HB101. Methods for the preparation of human monoclonal antibodies are known in the art and include phage display techniques and isolation of human hybridomas using B lymphocytes from patients producing antibodies against S mutans, as well as in vitro immunization techniques. Such techniques are well known in the art and are described, for example, in C.A.K. Borrebaeck, ed., "Antibody Engineering" (2d ed., Oxford University Press, New York, 1995), incorporated herein by this reference. The invention further includes chimeric antibodies, including humanized antibodies. This includes chimeric antibodies that have complementarity-determining regions that are identical with the complementarity-determining regions of one of: (a) a monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12559 and designated SWLAl; (b) a monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12560 and designated SWLA2; or (c) a monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12558 and designated SWLA3. Also within the scope of the invention are chimeric antibodies that have complementarity-determining regions that are identical with the complementarity- determining regions of an antibody that binds an antigen on the surface of S. mutans and can compete at least about 80% as effectively on a molar basis with at least one of SWLAl, SWLA2, or SWLA3 as SWLAl, SWLA2, or SWLA3 for binding to the antigen on the surface of S. mutans. These chimeric antibodies, as described above, have substantially no reactivity with any of the following bacterial strains: Streptococcus rattus ATCC19645, Streptococcus gordonii ATCC10558, Streptococcus gordonii ATCC 13396, Streptococcus mitis ATCC49456, Streptococcus sobrinus ATCC33478, Streptococcus sobrinus 6715, Streptococcus sanguis ATCC 10556, Streptococcus sanguis ATCC49295, Streptococcus anginosus ATCC33397, Lactobacillus acidophilus ATCC4356, Lactobacillus casei ATCC4646, Actinobacillus actinomycetemcomitans ATCC 33384, Porphyromonas gingivalis ATCC33277, Prevotella intermedia ATCC49046, Bacteroides forsythus ATCC43047, Eikenella corrodens ATCC23834, Fusobacterium nucleatum ATCC25586, Treponema denticola ATCC33520, Campylobacter rectus ATCC33238, Myxococcus xanthus DZ2, and Escherichia coli HB101. These chimeric antibodies specifically bind an antigen on the surface of S. mutans and which have at least a portion of the amino acid sequence of the heavy chain or the light chain of a different species origin than the species origin of the complementarity-determining regions. In one alternative, at least a portion of the amino acid sequence of the heavy chain or the light chain is of human origin so that the chimeric antibody is a humanized antibody. In a version of this alternative, substantially all of the amino acid sequences of the heavy chain and the light chain outside the complementarity-determining regions are of human origin. As indicated, chimeric antibodies according to the present invention may have a non-human antigen-binding site and a humanized effector binding region. The non-human antigen-binding portion may include, but is not limited to, a murine, canine, feline or other veterinary model or other mammalian antigen-binding site. Methods for producing chimeric antibodies, including humanized antibodies, are well known in the art and are described, for example, in C.A.K. Borrebaeck, ed., "Antibody Engineering" (2d ed., Oxford University Press, New York, 1995), incorporated herein by this reference. The invention further includes single-chain binding fragments, known generally as sFv, that have the appropriate specificity for the antigen on the cell surface of S. mutans as defined above. Methods for preparing such sFv are generally known in the art and are described, for example, in C.A.K. Borrebaeck, ed., "Antibody Engineering" (2d ed., Oxford University Press, New York, 1995), incorporated herein by this reference. The specificity of the SWLAl, SWLA2, and SWLA3 antibodies for S mutans antigen make these antibodies excellent markers for screening, diagnosis, prognosis, and follow-up assays, imaging methodologies, and therapeutic methods in the management of dental caries. The invention provides various immunological assays useful for the detection of S. mutans and for the diagnosis of dental caries or the risk thereof. This includes various immunological assay formats well known in the art, including, but not limited to, various types of radioimmunoassays, enzyme-linked immunosorbent assays (ELISA), enzymelinked immunofluorescent assays (ELIFA), and the like. In addition, immunological imaging methods capable of detecting dental caries are also provided by the invention, including but not limited to a colloidal-gold based colorimetric assay, and radioscintigraphic imaging methods using radiolabeled SWLAl, SWLA2, and SWLA3 antibodies (e.g., U.S. Patent No. 4,920,059 issued April 24, 1990; U.S. Patent No. 5,079,172 issued January 7, 1992). In addition the antibodies of the invention can be conjugated with other dyes or fluorescent markers and used directly on the tooth to image caries. Such assays may be clinically useful in the detection and monitoring of dental caries. Such assays generally comprise using one or more of the SWLAl, SWLA2, and SWLA3 antibodies. In addition to the immunological assays and imaging methods, the invention also includes an immunoconjugate comprising a molecule containing the antigen-binding region of the SWLAl, SWLA2, or SWLA3 antibody, or a fragment thereof containing the antigen binding region, joined to for example a therapeutic agent, a diagnostic agent or a cytotoxic agent for treatment of dental caries. Examples of cytotoxic agents include, but are not limited to, chlorhexidine, fluoride, ricin, doxorubicin, daunorubicin, taxol, ethidium bromide, mitomycin, etoposide, tenoposide, vincristine, vinblastine, colchicine, dihydroxyanthracenedione, actinomycin D, diphtheria toxin, Pseudomonas exotoxin (PE) A, PE40, abrin, glucocorticoid and radioisotopes. The SWLAl, SWLA2, and SWLA3 monoclonal antibodies of the invention are useful for diagnostic applications, both in vitro and in vivo, for the detection of dental caries. In vitro diagnostic methods are well known in the art (see, e.g., Roth, supra 1986, and Kupchik, supra 1988), and include immunohistological detection of dental caries or serologic detection of S mutans (e.g., in saliva samples or other biological fluids). Immunohistological techniques involve contacting a biological specimen, such as a saliva, tartar, or plaque specimen, with the antibody of the invention and then detecting the presence in the specimen of the antibody complexed to its antigen. The formation of such antibody-antigen complexes with the specimen indicates the presence of the antigen, S mutans. Detection of the antibody in the specimen can be accomplished using techniques known in the art, such as the immunoperoxidase staining technique, the avidin-biotin (ABC) technique or immunofluorescence techniques (Ciocca et al., (1986); Helistrom et al., (1986); and Kimball (ed.,), (1986)). Serologic diagnostic techniques involve the detection and quantitation of S. mutans antigens that have been secreted or "shed" into the saliva or other biological fluids of patients with dental caries. Such antigens can be detected in the saliva using techniques known in the art such as radioimmunoassays (RIA) or enzyme-linked immunosorbent assays (ELISA) wherein an antibody reactive with the "shed" antigen is used to detect the presence of the antigen in a fluid sample (see, e.g., Uotila et al, (1981) and Allum et al, 1986). These assays, using the antibodies disclosed herein, can therefore be used for the detection of S. mutans in biological fluids. Thus, it is apparent from the foregoing that the antibodies of the invention can be used in most assays involving antigen-antibody reactions. These assays include, but are not limited to, standard RIA techniques, both liquid and solid phase, as well as ELISA assays, immunofluorescence techniques, and other immunocytochemical assays (see, e.g., Sikora et al. (1984)). The antibodies of the invention are also useful for in vivo diagnostic applications for the detection of dental caries. One such approach involves the detection of dental caries in vivo by imaging techniques using the antibody labeled with an appropriate imaging reagent that produces a detectable signal when bound to .S mutans. Imaging reagents and procedures for labeling antibodies with such reagents are well known (see, e.g., Wensel and Meares, (1983); Colcher et al., (1986)). The labeled antibody may be detected by a technique such as radionuclear scanning (see, e.g., Bradwell et al. (1985)). The antibody fragments used in the immunoconjugates can include Fv, Fab, Fab' or F(ab)' 2 fragments. Use of immunologically reactive fragments, such as the Fv, Fab, Fab', or F(ab)' 2 fragments, is often preferable, especially in a therapeutic context, as these fragments are generally less immununogenic than the whole immunoglobulin. These antibodies, as well as unconjugated antibodies, may be useful therapeutic agents naturally targeted to S. mutans cells to kill the cells, thus preventing and or treating dental caries resulting from the accumulation of S. mutans. Techniques for conjugating therapeutic agents to antibodies are well known (see, e.g., Arnon et al., 1985; Helistrom et al. 1987; Thorpe, (1985); and Thorpe et al., (1982)). The SWLAl, SWLA2, and SWLA3 antibodies may also be used in methods for purifying S. mutans proteins and peptides and for isolating homologues and related molecules. Methods for purification of proteins and peptides using antibodies as capture reagents are well known in the art. For example, in one embodiment, a method of purifying an S. mutans protein comprises incubating a SWLAl, SWLA2, or SWLA3 antibody, which has been coupled to a solid matrix, with a lysate or other solution containing S. mutans proteins or peptides, under conditions which permit the SWLAl, SWLA2, or SWLA3 antibody to bind to the S. mutans protein or peptides; washing the solid matrix to eliminate impurities; and eluting the S mutans proteins or fragments from the coupled antibody. The invention further includes a method for detecting the presence of S. mutans on teeth in a subject or in a saliva, plaque, or tartar sample from a subject, comprising contacting at least one tooth or the sample with the SWLAl, SWLA2, or SWLA3 antibody and detecting the binding of the antibody with the S. mutans on the tooth and or in the sample. The antibody can be administered by topical application to the surface of the teeth by means including in a toothpaste, mouthwash, lozenge, gel, powder, spray, liquid, tablet, or chewing gum. One can detect the presence of S. mutans by determining the presence of a complex formed between the monoclonal antibodies and S. mutans cells as a result of contacting the tooth and or the sample with a labeled antibody, the complex being indicative of the presence of S mutans in the sample. The antibodies of the invention can be labeled so as to directly or indirectly produce a detectable signal. The label can for example be selected from the following compounds a radiolabel, an enzyme, a chromophore , a chemiluminescent moiety, a bioluminescent moiety, or a fluorescer. When a fluorescer is used the fluorescence can be detected by means of fluorescence microscopy, fluorometer, or by flow cytometry. A colloidal gold colorimetric system can also be used to detect the presence of S mutans. The colloida, gold system is well known in the art. (J.A.K. Hasan, et al. (1994); and E. Harlow, D. Lane. (1988)). The invention also includes a method for diagnosing, in a subject, the early onset of dental caries. This can be accomplished by quantitatively determining on at least one tooth in a subject, or in a saliva, plaque, or tartar sample from a subject, the number of S. mutans present using an antibody of the invention and comparing the number of S. mutans cells so determined to the amount in a sample from a normal control, i.e. a subject frea from dental caries. The normal range for S. mutans can be determined using any of the above detection methods (i.e. detecting labeled antibody to S. mutans) and quantifying the amount of S. mutans in a normal subject or subjects free of dental caries. For exa.*nple, a normal range can be 1 cell ml to approximately 1 x 10 5 cells/ml or 1 x 10 " cells/n 1 to 1 x 10 cell/ml. Other ranges are possible. If the subject has a measurably higher amount of S. mutans present that is outside of the normal range it would indicate the early onset of dental caries in the subject. The invention also includes a method for monitoring the course of dental caries in a subject. One can test teeth or a saliva, plaque, or tartar sample from a subject with the antibodies of the invention at different points in time and determine if there has been a change in the level of S mutans present. An increase over a previous reading for that individual would suggest increased caries activity. For example if a first test of a subject's saliva sample gave a result of less than 1 x 10 3 S. mutans cells/ml and a sample taken at a later time gave a result of greater than 1 x 10 S. mutans cells/ml it would indicate that the subject now has an increased risk of dental caries. The invention further comprises a method of protecting teeth from dental caries by topically applying an SWLAl, SWLA2, or SWLA3 antibody, or a fragment thereof containing the S mutans antigen binding activity, to teeth of a subject. The antibody can be applied topically to the surface of the teeth by means of for example, of a toothpaste, mouthwash, lozenge, gel, powder, spray, liquid, tablet, or chewing gum formulated using standard methods. The antibody can be linked to a toxic agent that kills the bacteria and applied to the surface of the teeth by, for example, any of the above methods. The proper dose of the monoclonal antibodies of the invention can be easily determined using methods which are well known to one skilled in the art (see, generally, Goodman et al. (ed.), 1993). The methods described herein for detecting S. mutans may be performed using diagnostic kits (e.g., U.S. Patent No. 5,141,850 issued August 25, 1992; U.S. Patent No. 5,202,267 issued April 13, 1993; U.S. Patent No. 5,571,726 issued November 5, 1996; U.S. Patent No. 5,602,040 issued February 11, 1997). Such kits include at least one monoclonal antibody of the invention and reagents for detecting the binding of the monoclonal antibody to S. mutans cells present on teeth in or in a sample, e.g. of saliva, taken from a subject. The reagents include agents capable of detection, for example by fluorescence and ancillary agents such as buffering agents. The kits may also include an apparatus or container for conducting the methods of the invention and/or for transferring samples to a diagnostic laboratory for processing, as well as suitable instructions for carrying out the methods of the invention. ADVANTAGES OF THE INVENTION With the monoclonal antibodies of the invention it is possible to monitor the detailed topology and proportion of S. mutans relative to other bacterial species during the course of plaque formation and the initiation and progression of carious lesions in a subject (e.g. with fluorescence microscopy). This in turn can lead to the development of improved treatment of dental caries. For example, antibodies of the invention can be conjugated with a regular or fluorescent dye. A solution containing such antibodies can be used to rinse a patient's mouth. The dyelinked antibodies can bind to the location of the dental caries. The dental caries image can be shown on a TV screen through a video or digital micro-camera. With the fluorescent dye-linked monoclonal antibody and video imaging techniques, it is possible to label the bacteria at infection sites and thereby assist in detecting carious lesions at an early stage and in determining whether or not the lesion is active. This aids diagnosis, treatment and improves the management of dental health. The monoclonal antibody based detection methods of the invention allows a rapid, accurate, and economic way to quantitatively measure the S. mutans in a subject, with significant advantages compared to current methods. As the first step towards development of effective and accurate caries risk assessment systems, we have described methods in this study that combine monoclonal antibodies with fluorometry techniques for detection and enumeration of S. mutans. These methods, especially flow cytometry, are able to rapidly detect the bacterium with high specificity and enumerate it with high accuracy. With these methods, it will be possible to process a large number of saliva samples in a short period of time at low cost. This will allow low cost, accurate assays to reevaluate the correlation between the salivary count of S mutans and the presence and rate of progression of dental caries. Such assays can consists of monoclonal antibodies linked to a colloidal gold colorimetric system on test strips. The invention includes the use of a test system for rapid and simple assay of S. mutans by color change with simple immersion in fresh saliva. Such a method is suitable for use at a dentist's chairside as well as in the patient's household to assess dental caries risk. The accurate and objective assessment of dental caries risk state and/or caries activity state with any of these or with similar technologies will permit targeted preventive and curative treatment, thereby significantly improving human dental health. In order that the invention described herein may be more fully understood, the following example is set forth. It should be understood that this example is for illustrative purposes only and is not to be construed as limiting the scope of this invention in any manner. EXAMPLE 1 MATERIALS AND METHODS Bacterial strains and culture conditions. Bacterial strains used are listed in Table 2. S mutans was grown in Brain-Heart Infusion (BHI) medium (Difco) with supplementations of haemin (5 μg/ml). Other bacteria were grown in various media as suggested by the American Type Culture Collection (ATCC). The anaerobic bacteria were grown in an atmosphere of 80% N 2 , 10% CO 2 and 10% H 2 at 37°C. Production and screening of species-specific monoclonal antibodies against S. mutans. Type c S mutans strain ATCC25175 were grown to log phase in BHI medium and washed twice with phosphate buffered saline pH 7.2 (PBS) by centrifugation at 3000 x g for 5 min. The pellet was resuspended in 1% formalin/0.9% NaCl, mixed at room temperature (RT) for 30 min and washed twice with 0.9% NaCl. BALB/c mice (8-10 weeks) were immunized intraperitoneally with 100 μl of the antigen containing approximately 10 whole cells of formalinized intact S. mutans bacteria emulsified with Freund's incomplete adjuvant (FIA). After 3-5 weeks they received a second dose of antigen (10 whole cells of bacteria in FIA). Three days prior to fusion, the mice were boosted intravenously with 10 whole cells in saline. The standard tissue culture media was RPMI 1640 (Gibco) medium supplemented with 2 mM L-glutamine, 1 mM sodium pyruvate, and 10 mM HEPES and containing 100 μg/ml penicillin and 100 μg/ml streptomycin with 10% fetal calf serum. Hybrids were selected in media containing HAT (100 μg Hypoxanthine, 0.4 μM Aminopterin; 16 μM Thymidine). HT (100 μg Hypoxanthine, 16 μM Thymidine) was maintained in the culture medium for 2 weeks after aminopterin was withdrawn. OPI (1 mM oxaloacetate, 0.45 mM pyruvate and 0.2 U/ml bovine insulin) was added as additional growth factors to the tissue culture during cloning of hybridomas. Hybridomas were raised according to the procedure reported by Kohler & Milstein (1975). The NSI/Ag4.1 mouse myeloma cell line was used as the fusion partner and grown in spinner cultures in 5% CO 2 at 37°C and maintained in log phase of growth prior to fusion. The following approach was used for screening for species-specific monoclonal antibodies against S mutans. The initial screening was performed using an ELISA assay, which selects for the culture supematants containing antibodies that bind to S. mutans. Formalinized bacteria were diluted in PBS to OD 600 =0.5, and added to duplicate well s ( 100 μ 1 ) in 96 well PVC ELISA plates preincubated for 4 h with 100 μl of 0.02 mg/mi Poly-L-lysine. These antigen-coated plates were incubated overnight at 4°C in a moist box then washed 3 times with PBS and blocked with 0.5% fetal calf serum in PBS and stored at 4°C. A volume (100 μl) of mature hybridoma supematants were added to the appropriate wells of the antigen plates, incubated for 1 hr at room temperature, washed 3 times with PBS-0.05% Tween 20, and bound antibody was detected by the addition of polyvalent goat-anti-mouse IgG antibody conjugated with alkaline phosphatase diluted 1 : 1000 with PBS- 1 % fetal calf serum. After the addition of the substrate, 1 mg/ml p-nitrophenyl phosphate in carbonate buffer (15 mM Na 2 CO 3 , 35 mM NaH 2 C0 3 , 10 mM MgCl 2 pH 9.6), the color development after 15 min was measured in an EIA reader at 405 nm. The positive supematants (3 fold higher than control) were then subjected to the immunoprecipitation assay (mixing 100 μl bacteria with 100 μl supernatant) to screen for those with strong positive reactivity. These supematants were then used to test crossreactivity with the following bacteria (strains listed in Table 2); Streptococcus mutans, Streptococcus rattus, Streptococcus gordonii, Streptococcus mitis, Streptococcus sobrinus, Streptococcus sanguis, Streptococcus anginosus, Lactobacillus acidophilus, Lactobacillus casei, Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, Bacteroides forsythus, Eikenella corrodens, Fusobacterium nucleatum, Treponema denticola, Campylobacter rectus, Myxococcus xanthus, and Escherichia coli. The results are shown in Table 2. Detecting S. mutans with fluorescence microscopy. A volume (10 μl) of bacterial solution was mixed with 5 μl of culture supernatant and incubated at room temperature for 20 seconds, then 1 μl fluorescein isothiocyanate (FITC) linked goat-anti-mouse IgG antibody (Sigma) was added to the solution. The mixture was placed onto a Hausser bacterial counting chamber (Bright- line 1475) and observed with a fluorescent microscope (Zeiss Axiophot) for enumeration of the bacteria. Detecting S. mutans with a fluorometer. The bacteria were labeled with FITC molecules in the same way described above. The mixture was washed twice with PBS by centrifugation to remove the excess FITC-linked goat-anti-mouse antibody in solution. The pellet was then resuspended in PBS solution and put into a fluorometer (TD700, Turner Designs, Sunnyvale , CA) to measure the FITC fluorescent dyes bound to S. mutans, which reflects the bacterial concentration in the sample. Detecting S. mutans with flow cytometry. The bacteria were labeled with FITC molecules in the same way described above and analyzed with a Fluorescence- Activated Cell Sorter (FACS) (COULTER EPICS elite flow cytometer, Coulter Corp. Miami, FL). The FACS machine detects every particle in a solution and separates them based on their fluorescent intensity, with a capacity of 10,000 cells per second with an accuracy of 99.99%. With FITC-linked monoclonal antibodies against S. mutans, the bacteria can be easily detected and enumerated by the FACS machine in any bacterial mixture. Results Isolation of species-specific monoclonal antibodies. Three BALB/c mice were immunized with formalinized S. mutans and used for production of monoclonal antibodies. The No. 2 mouse was selected because its serum showed the strongest positive reactivity with the bacterium and because 1835 mature hybridomas were obtained from this mouse. Given the complexity of the surface of the S. mutans that contains a vast amount of distinct epitopes, it was important to have enough different hybridomas for binding assays in order to obtain some species-specific monoclonal antibodies. All 1835 mature hybridoma supematants were screened with the ELISA assay, and 781 supematants were found to have positive reactivity with S. mutans. Further immunoprecipitation assays identified 116 supematants that gave the strongest positive reactivity. These culture supematants were used to test cross-reactivity with the bacteria listed in Table 2. TABLE 2 Three supematants were identified which had the highest positive reactivity with S. mutans, yet did not have any significant cross-reactivity with other bacteria listed. The three hybridomas in the supematants were further subcloned, purified, and designated as SWLAl, SWLA2, and SWLA3. Subclass isotype analysis indicates that all three monoclonal antibodies are of IgG subclass. Western blot analysis showed that the antibodies did not cross-react with any other bacterial surface proteins, distinguishing them from the known antibodies to S mutans that cross-react with proteins on the cell surface of other bacteria. These findings indicate that the ant bodies of the invention most likely bind to unique polysaccharide epitope on the surface of S. mutans. Enumeration of S. mutans with fluorescence microscopy. SWLAl, SWLA2 and SWLA3 antibodies were used to specifically label S. mutans in a mixture of bacterial cells. The monoclonal antibody-labeled S. mutans cells were then treated with FITC linked goat-anti-mouse IgG antibody to bind the monoclonal antibody and consequently label S. mutans cells with FITC. The FITC labeled S. mutans cells could be viewed and enumerated directly using a fluorescence microscope. Fig. 1(a). shows a microscopic image of a bacterial mixture containing E rattus, S gordonii, S. mitis, S. sanguis, E. coli as well as S. mutans. When the phase contrast lighting was shifted to fluorescent lighting, only S. mutans cells exhibited a fluorescent image due to bound FITC molecules, while other bacteria did not (Fig. 1(b).). In this way, the number of S. mutans in the mixture was easily recognized and enumerated. We compared this method of enumeration with the conventional colony counting method (the colony counting was performed by diluting bacteria with PBS and plating on BHI plates) and found good correlation between the two methods (Table 3). TABLE 3 Enumeration of S. mutans with fluorometer. As described above, S. mutans cells in a solution can be fluorescence- labeled with the monoclonal antibodies of the invention plus FITC-linked goat-anti- mouse IgG antibody, and the amount of fluorescence can be measured with a fluorometer. A linear correlation was observed between the amounts of fluorescence and concentrations of S mutans in the solutions assayed by the conventional colony counting method (the colony counting was performed by diluting bacteria with PBS and plating on BHI plates.) (see Table 4). TABLE 4 Automated enumeration of S. mutans with fluorescence-activated cell sorter. 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Claims: What is claimed is: 1. A monoclonal antibody that specifically binds an antigen on the surface of Streptococcus mutans and which is the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB12559, and which is designated SWLAl. 2. A monoclonal antibody that specifically binds an antigen on the surface of S. mutans and which is the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12560, and which is designated SWLA2. 3. A monoclonal antibody that specifically binds an antigen on the surface of S. mutans and which is the monoclonal antibody produced by a hybridoma deposited with the American Type Culture Collection as ATCC No. HB 12258, and which is designated SWLA3.

Inventors: HUME WYATT, SHI WENYUAN, HUME, WYATT, SHI, WENYUAN
Applicants: HUME WYATT, SHI WENYUAN, UNIV CALIFORNIA, HUME, WYATT, SHI, WENYUAN, THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
Application year: 1999
Main classification: C07K16
IPC codes: C07K16, C12N5, C12P21, C12R1, G01N33