DETECTION METHOD FOR MICROTHRIX PARVICELLA

Abstract: The present application provides a method of detecting Microthrix parvicella comprising reacting M. parvicella with antibodies. The method can further enable the isolation of M. parvicella. Monoclonal antibodies, polyclonal antibody or a cocktail of antibodies maybe employed.

Description: DETECTION METHOD FOR MICROTHRIX PARVICELLA This invention relates to the field of detection of bacterial populations in waste waters, such as activated sludge, lagoon treatment ponds and other waste treatment methods in common use within industry. In particular the invention relates to detection of Microthrix species . Microthrix parvicella is a bacterium difficult to detect in si tu in mixed aqueous systems by conventional means. The present invention relates to a method to specifically detect and label M. parvicella in a variety of complex samples. By detecting and quantifying this organism, it will be possible to better control settling problems encountered in waste waters caused by this organism. At present two methodologies are used to identify M. parvicella in mixed samples: by conventional taxonomic identification using keys developed by Eikelboom (1968) and others and by the use of specific fluorescently- labelled in si tu hybridisation (FISH) DNA probes (designed from unique 16S rRNA DNA sequences) . The former is used routinely within the industry and the latter is at present restricted to research studies (Erhart et al . , 1997) . Quantification of M. parvicella in pure culture is presently carried out by protein or dry weight determinations (c.f Slijkhuis et al . 1984) . Various methods in the past have been applied to estimate numbers of filaments of M. parvicella, via direct counting methods (Bradford et al , 1998), but these are subjective and only give conservative estimates. Key-type taxonomic identification is based on the combined use of the microscopic stains and morphological characteristics. As a result this is slow, and needs a significant degree of operator training and expense. Morphological identification is largely subjective, and does not take account of unusual growth forms of M parvicella that may exist. In si tu DNA probes are highly specific, but are relatively expensive in the materials used. In addition, the time taken for each assay and cost is increased due to the need to permeablise the cells to enable introduction of the probe to the cell . The degree of fluorescence is variable according to the number of ribosomes present within the cell. During times of low nutrient availability, or other times where the cell is not growing, the number of ribosomes may be low, leading to a poor fluorescent signal. Additionally, the variable nature of waste water precludes the development of an essay method applicable to a wide range of samples on a routine basis. Enumeration from protein measurements and dry weight is only possible in pure cultures, is not applicable to the waste water industry, and can only provide an empirical estimation. Direct counts are dependant on correct initial diagnosis, and will fail to count filaments within floes. It is an object of the present invention to produce a method for diagnosis of populations of the bacteria Microthrix parvicella present in activated sludge or waste waters . Further, it is also an object of the present invention to provide a method of quantification of Microthrix parvicella in instances where it is diagnosed. Preferably, the method of detection and subsequent isolation to allow quantification, shall be mediated through the use of novel antibodies which have specificity to M. parvicella . One suitable antibody is derivable from cell line MP5B10 deposited at the European Collection of Cell Culture on 30 November 1999 under Accession number 99113020. Preferably, the specific novel antibodies will be detected through the use of an immunoassay or microscopic means. The said antibodies may be conjugated to fluorescent agents, enzymes or similar molecules or indirectly labelled through the use of a secondary conjugated antibody, to enable the selective visualisation of cells of M. parvicella . The antibodies may also be bound to an iron/polystyrene bead to allow immunomagnetic separation. The current invention, further has the advantage that it provides a novel method of performing the difficult task of detecting M. parvicella in mixed aqueous systems, while at the same time providing considerable savings in costs, time and operator training required to perform the act by previous methods . The present invention relates to several monoclonal antibodies showing specificity to candidatus Microthrix parvicella . Several hybrid Murine cell lines that secrete antibody specific to Microthrix parvicella are disclosed. These antibodies are useful in the detection and isolation of Microthrix parvicella from aqueous samples such as activated sludge. Microthrix parvicella is a common causative bacterium of the waste water settling phenomenon known as filamentous bulking, especially those receiving municipal waste (Blackall et al . , 1995, Eikelboom et al . 1998) . It also causes extensive foaming and scumming of anaerobic digestors (Dillner Westlund et al . 1998) . Several surveys conducted of waste water treatment plants in Western, Northern, Southern and Central Europe have indicated M. parvicella to be the dominant micro-organism (Eikelboom et al . , 1998, Wanner et al . 1998) . Current attempts to control this organism have only had limited success (Madoni and Davoli, 1993) . Currently routine diagnosis can only be carried out in a qualitative and semi -quantitative manner using conventional microbiological taxonomic tools (Eikelboom, 1968) , and is thus subject to ambiguous interpretations. Therefore, it is an object of this application to provide novel monoclonal and polyclonal antibodies specific to candidatus M. parvicella suitable for unambiguous detection and enumeration. The invention will be exemplified with reference to the accompanying drawings wherein Figures la and lb illustrates fluoresently labelled DNA probes based on 16S RNA. Figure 2 shows immunofluorescence of M. parvicella RN1 using Rabbit polyclonal antibody. Figure 3 illustrates immunofluorescence generated by a selection of antibodies. Figure 4 shows a municipal waste sample probed with a cocktail of antibodies. Figure 5 shows a municipal waste sample probed with a monoclonal antibody in phase contrast and fluorescent fields. Figure 6 shows a municipal waste sample probed with a monoclonal antibody in phase contrast and fluorescent fields. Figure 7 shows a municipal waste sample probed with a monoclonal antibody in phase contrast and fluorescent fields. Figure 8 shows pharmaceutical waste probed with monoclonal antibody cocktail in phase contract and fluorescent fields. Figure 9 shows polyclonal antibody differentiating between different growth states of M. parvicella . A novel monoclonal antibody according to the present invention is produced as follows. That is, the anti-M. parvicella antibody is produced by immunising a BALB/c mouse with the Gram-positive heterotroph M. parvicella strain RN1 isolated from a conventional waste water treatment facility (Rossetti et al . , 1997), forming fused cells (hybridomas) between antibody-forming spleen cells obtained from the animal and mouse myeloma cells (P3x63Ag8-653 (NS-O/l) cell line) , subsequently proliferating said fused cells, selecting cells forming an antibody showing specificity to M. parvicella from the proliferated fused cells, and culturing antibody- forming cells producing the same. An anti-M. parvicella antibody would be useful in the quantitative and qualitative assessment of populations of M. parvicella present in activated sludge or other waste waters, either by immunofluorescent microscopy or by some other immunoassay known to the art, or as a reagent to be used in extracting other strains of M. parvicella from mixed microbial communities. Polyclonal antibodies specific to M. parvicella are prepared by immunising a rabbit to M. parvicella RN1. After a suitable number of immunisations, the animal is bled out, and serum containing polyclonal antibody obtained. For detection of an antibody, an enzyme immunoassay is employed. The production of monoclonal antibody to M. parvicella is performed by maintaining and growing the above antibody- forming clones in a RPMI medium (ICN- Flow laboratories, UK) The present invention offers numerous advantages over present techniques: 1. Identification of M. parvicella is unambiguous, due to the high specificity of the antibodies used. 2. No cell pre-treatment step is required, cutting a significant amount of time and cost from the total assay. This also allows the method to be applied to flow cytometric analysis, allowing on-line analysis. 3. The signal strength is superior and more even over the cells than that obtained by using 16S rRNA probes . 4. The assay is simple, requiring few steps and only minimal operator training. Most components of the assay are inexpensive and easily sourced. A. Preparation of monoclonal antibody Microthrix parvicella RNl was cultivated on a complex agar medium (R2AM: per gram double distilled water; Yeast Extract, 0.5g, Protease Peptone, 0.5g Casamino Acids, 0.5g, Soluble Starch, 0.5g, MgS0 4 .7H 2 0, 0. lOg, KH 2 P0 4 , 0.3g CaCl 2 .2H 2 0, 0.05g, NaEDTA, 50mg, Na 2 Mo0 4 , 20mg, NMS trace element solution (Atlas, 1996) 1ml, vitamin supplement (Eikelboom, 1968), 1ml, Glucose, 0.5g, Pyruvate, 0.5g) at an incubation temperature of 15-20^ for 3-4 weeks, or until colonies are visible. The microbial identity of Microthrix parvicella RNl was confirmed by partially sequencing the 16S rRNA gene and by fluorescent in situ hyrbidisation (by the method of Erhart et al , 1997) (figure la) using species-specific 16S rRNA oligonucleotides . Figure lb shows the appearance of the bacterium under ordinary (white lite, phase contrast) conditions. For production of all antibodies, bacterial biomass was obtained by washing 30 day old cell colonies from R2AM agar with physiologically buffered saline (PBS) . Polyclonal antibody was obtained by immunizing a rabbit subcutaneously with 0.8 mis of a suspension (delivered in 4 locations in 0.2 ml amounts) of M. parvicella RNl in PBS (optical density of approximately 0.6 at 650 nm) every 10 days until immunofluorescence of M. parvicella RNl on slides could be determined using sampled serum (in this case, after 3 such immunisations) . At this point, the host animal, a Rabbit, was bled out, and the serum obtained according to the art. Serum was used in immunofluorescence using a suitable dilution in PBS. Figure 2 shows immunofluorescence of M. parvicella RNl using a 1:1000 dilution of Rabbit polyclonal antibody. Cell colonies were then harvested/washed with a physiological saline solution (PBS) and suspended in PBS at pH 7.3 to give an absorbance at 650 nm of 0.2000. 0.2 ml of the obtained suspension was injected into the peritoneal cavity of a BALB/c mouse, and 36 days later 0.2 ml of the same suspension was injected in the same manner. The mouse was killed on the 4th day following the final immunisation to extract the spleen, and the spleen cells were suspended in the RPMI 1640 medium (ICN-Flow Laboratories, UK) . Standard cell fusion was then carried out in a manner known to the art (Lutton et al . , 1991), and single cell clones obtained. These clones were then cultivated in RPMI 1640 medium, and screened for IgG production by standard means. Positive hybridomas were selected and further cultured and screened for antibody specific to M. parvicella by the immunofluorescence method as follows. Following this, clones were recloned by limiting dilution, and rescreened for specificity. The following cell lines were obtained: MP5B106A, MP4B5, MP4C3, MP2C11 and MP3E12. The immunofluorescence generated by a selection of antibodies (MP5B106A, MP4B5, and MP2C11, chosen as representative of general appearance) when reacted with M. parvicella RNl and a fluorescent anti-Mouse IgG antibody as shown in figures 3a-3c. The specificity of the presumptive monoclonal antibodies to Microthrix parvicella bacteria was determined by immunofluorescence microscopy and by a colour reaction according to an enzyme antibody assay. Immunofluorescence microscopy was performed as described by Ramage et al . (1998) : monoclonal antibody was bound to formaldehyde-killed cells fixed to a microscope slide through a series of incubations. A secondary anti -mouse goat antibody, labelled with either TRITC or FITC (Biorad, USA) , was bound to this antibody following a further series of incubations. UV-microscopy, employing a suitable filter, allowing visualisation of labelled cells. Non-labelled cells did not fluoresce under those conditions. The specificity of the monoclonal and polyclonal antibodies with respect to other filamentous and non- filamentous bacteria commonly found in wastewater treatment plants are examined. Cultures of Escherichϊa coli (NCIMB Type strain 11943) , Haliscomenobacter hydrossis (ATCC 27775) , Sphaerotilus natans (NCIMB 11196), Thiothrix spp . isolate (provided by R. Brigmon, Westinghouse Savannah River Company, South Carolina, US, isolated from Orange Springs, Florida), Gordonae amarae (nocardia arnarae NCIMB 11222) , Propionibacterium acnes (Type 1 and 2) , Rhodococcus MJL100 (NCIMB 12038) and Lactobacillus plantarum were examined. None showed any significant cross -reactivity following immunofluorescence microscopy. B. Detection of M. parvicella in samples The assay used follows that described by Ramage et al (1998) : 1. Air dry a 30 μl sample on a Teflon coated multiwell slide (ICN-Flow Laboratories, UK) . 2. Two methods can equally be used to fix the cells on the slide, Either fix in 4% Formaldehyde (in physiologically buffered aline (PBS)) at 4°C, followed by dehydration in ice cold absolute alcohol for 10 minutes. Or fix air-dried smears in ice cold methanol for 10 minutes. In both cases, air-dry the slide prior to storage or use. 3. Apply 30 μl of antibody solution to the air dried smear (at the appropriate dilution) and incubate at 37 "C for 45 minutes. 4. Wash off antibody, wash in PBS for 30 minutes. 5. Apply secondary fluoroscently-labelled (e.g FITC) anti-mouse goat antibody (Biorad, USA) , and incubate as before for 45 minutes. Wash again for 30 minutes. 6. Mount slide and view with a epifluorescence microscope, or similar. Filamentous cells of M. parvicella will fluoresce according to the fluorescent label and filter used. Other methods may vary in the type of labelled secondary antibody, or, alternatively, the anti-M. parvicella antibody may be directly labelled with a suitable chemical tag according to the methods known to the art. The labelled antibody may also be applied directly to a sample for flow cytometric analysis (i.e computerised analysis of fluorescent particles passing through a laser) . Presumptive Microthrix parvicella flaments were detected in a range of samples from petrochemical waste, municipal waste water plants and fisheries waste using the aforementioned immunofluorescence . No fluorescent filaments were detected in a range of samples (other municipal waste water treatment plants, other petrochemical plants, pharmaceutical plant waste) previously determined to be free of M. parvicella . The following figures illustrate the detection of natural populations of M. parvicella populations in wastewaters by immunofluorescene microscopy. Figures 4a to 4c show a municipal waste sample dual probed with an FITC-labelled cocktail of the described monoclonal antibodies and TRITC-labelled polyclonal antibody as described. Identical fields of view under both phase contrast and UV-excitation are shown (the UV-excitation image showing fluorescent filaments identified as M. parvicella) . In both cases, the same filaments are seen fluoresing. Figures 5a, 5b, 6a, 6b, 7a and 7b shows a municipal waste sample probed with FITC-labelled monoclonal antibody (MP2C11, MP4B5 and MP5B106A respectively) ; both the phase contrast and fluorescing fields of view are shown. Fluorescing filaments were identified as M. parvicella . Figures 8a and 8b show pharmaceutical waste previously determined not to contain M. parvicella probed with the FITC-labelled monoclonal antibody cocktail described previously. Non- Microthrix filaments show no fluorescence. Figures 9a to 9d show the ability of the polyclonal antibody to differentiate different growth states of M. parvicella in situ. Levels of fluorescence differ in two municipal waste samples differentiated only by their relative oxygen content. This indicates that the presentation of some of the epitopes is affected by the growth state of the bacterium. Fluorescently labelling the bacteria greatly improves the applicability of digital image analysis, using commercially available software such as PC Image (Foster Findlay Associates) or similar, to enable enumeration of specific sub-populations. The fluorescently labelled antibody may also be applied directly to a sample for flow cytometric analysis (i.e. computerised analysis of fluorescent particles passing through a laser) (Leiserson, 1985) . Other applicable microscopic methods may vary in the type of labelled secondary antibody, or, alternatively, the anti-M. parvicella antibody may be directly labelled with a suitable chemical tag according to methods known to the art. Such variations include: i) Immunogold or immunosilver labelling, suitable for ordinary light microscopy. ii) Horseradish peroxidase and alkaline phosphase with a solid substrate can also be used to give a coloured marker when bound to a secondary antibody. iii) Radiolabelled secondary antibodies may also be used, and cells visualised by micro- autoradiography. C. Immunomagnetic separation Another application is incorporation into a commercially available immunomagnetic separation. In this case, the antibody is bound to a plastic bead, with an iron core. Target cells bind onto the attached antibody. The beads, with attached cells can then be removed from the sample by use of a magnet. This method can be used for the removal of M. parvicella from a sample for research purposes. Targe cells or extract may be concentrated onto a suitable membrane (e.g. nitro-cellulose) . Antibody is then applied, incubated, excess washed, followed by a secondary antibody, labelled with either horseradish peroxidase or alkaline phosphatase. In the presence of a suitable solid substrate, and following a prescribed incubation step, target cells will be colormetrically labelled and quantified using a suitable colorimeter. References Atlas, R (1996) . Handbook of Media for Environmental Microbiology. CRC Press. London Blackall, L.L., Seviour, E. M., Cunningham, M. A., Seviour, R. J., and Hugenholtz, P. (1995). Microthrix parvicella is a novel, deep branching member of the actinomycetes subphylum. Systematic and Applied Mi crobiology 17 , 513-518. Bradford, D., Christensson, C, Jakab, N. and Blackall, L.L (1998) . Molecular biological methods to detect "Microthrix parvicella" and to determine its abundance in activated sludge. Water Sci ence and Technology 37, 37-45. Dillner-Westlund, A., Hagland, E., and Rothman, M. (1998) . Bulking and foaming caused by Microthrix parvicella at three large sewage treatment plants in the Stockholm area. Wa ter Sci ence and Technology 34, 281-287. Eikelboom, D.H., Andreadakis, A. and Andreasen, K (1998) . Survey of filamentous populations in nutrient removal plants in four European countries. IVater Science and Technology 37, 281-289. Eikelboom, D. H. (1968) . Filamentous organisms observed in activated sludge. Water Research 9, 365- 388 Erhart, R., Bradford, D., Seviour, R. J., Amann, R., and Blackall, L. L. (1997) . Development and use of fluorescent in situ hybridisation probes for the detection and identification of "Microthrix parvicella" in activated sludge. Systematic and Applied Mi crobiology 20 , 310-318. Hill, E., and Matsen, J. (1983). Enzyme-linked immunoabsorbent assay and radioimmunoassay in the serologic diagnosis of infectious diseases. Journal of Infectious Di seases 147:258. Lutton, D.A., Patrick, S., Crockard, A.D., Stewart, L.D., Larkin, M.J., Dermott, E., and McNeill, T.A (1991) . Flow cytometric analysis of within-strain variation in polysaccharide expression by Bacteroides fragilis by use of murine monoclonal antibodies. Journal of Medical Microbiology 35, 229-237. Madoni, P., and Davoli, D. (1993). Control of Microthrix-parvicella growth in activated-sludge. Ferns Microbiology Ecology 12, 277-284. Ramage, G., Patrick, S., and Houston, S (1998). Combined fluorsecent in situ hybridisation and immunolabelling of Bacteroides fragilis. Journal of Immunologi cal Methods 212, 139-147. Rossetti, S., Christensson, C, Blackall, L. L., and Tandoi, V. (1997) . Phenotypic and phylogenetic description of an Italian isolate of "Microthrix parvicella". Journal of Applied Microbiology 82, 405- 410. Slijkhuis, H., Van Groenestijn, J. and Kylstra, D.J. (1984) . Microthrix parvicella, a filamentous bacterium from activated sludge: Growth on Tween 80 as carbon and energy source. Journal of General Microbiology 130, 2035-2042. Tandoi, V., Rossetti, S., Blackall, L. L. and Majone, M. (1998) . Some physiological properties of an Italian isolate of "Microthrix parvicella" . Water Science and Technology 37, 1-8. Wanner, J., Ruzickova, I., Jetmarova, P., Krhutkvoa, O. and Paraniakova. J. (1998) . A national survey of activated sludge separation problems in the Czech Republic: Filaments, floe characteristics and activated sludge metabolic properties. fVate-r Science and Technology 37.

Claims: CLAIMS 1. A method of detecting Microthrix parvi cella , the method comprising the step of reacting M. parvicella with antibodies which have specificity to M. parvicella . 2. A method as claimed in claim 1 which comprises an immuno assay and/or microscopic means. 3. A method as claimed in any of the preceding claims wherein the antibodies are conjugated to fluorescent agents or enzymes or indirectly labelled through the use of a secondary conjugated antibody to enable selective visualisation of cells of M. parvi cella . 4. A method as claimed in any of the preceding claims which further includes a step to isolate the M. pavi cella . 5. A method as claimed in any of the preceding claims wherein the antibodies are bound to iron/polystyrene bead(s) to allow immunomagnetic separation. 6. A method as claimed in any of the preceding claims wherein M. pavicella is detected in an aqueous system. 7. A method as claimed in any of the preceding claims wherein the antibody is a monoclonal antibody. 8. A method as claimed in any of the preceding claims wherein the antibody is a cocktail of several monoclonal antibodies. 9. A method as claimed in any of the preceding claims wherein the antibody is derivable from cell line MP5B10 deposited at The European Collection of Cell Cultures on 30 November 1999 under Accession number 99113020. 10. Cell line MP5B10 deposited at The European Collection of Cell Cultures on 30 November 1999 under accession number 99113020. 11. Antibodies produced from the cell line as claimed in claim 10. 12. Antibodies for use in a method as claimed in any of claims 1 to 9. 13. A cocktail of antibodies for use in a method as claimed in any of claims 1 to 9.

Inventors: LARKIN MICHAEL JAMES, PATRICK SHEILA, THOMPSON ANDREW SYDNEY, LARKIN, MICHAEL, JAMES, PATRICK, SHEILA, THOMPSON, ANDREW, SYDNEY
Applicants: LARKIN MICHAEL JAMES, PATRICK SHEILA, THOMPSON ANDREW SYDNEY, UNIV BELFAST, LARKIN, MICHAEL, JAMES, PATRICK, SHEILA, THE QUEEN'S UNIVERSITY OF BELFAST, THOMPSON, ANDREW, SYDNEY
Application year: 1999
Main classification: G01N33
IPC codes: C07K16, G01N33