SMAD-INTERACTING POLYPEPTIDES AND THEIR USE

Abstract: The current invention concerns SMAD-interacting protein(s) obtainable by a two-hybrid screening assay whereby Smad1 C-domain fused to GAL4 DNA-binding domain as bait and a cDNA library from mouse embryo as prey are used. Some characteristics of a specific SMAD interacting protein so-called SIP1 are the follwing: a) it fails to interact with full size XSmad1 in yeast; b) it is a member of the family of zinc finger/homeodomain proteins including delta -crystallin enhancer binding protein and/or Drosophila zfh-1; c) SIP1czf binds to E2 box sites; d) SIP1czf binds to the Brachyury protein binding site; e) it interferes with Brachyury-mediated transcription activation in cells and f) it interacts with C-domain of Smad 1,2 and 5. The minimal length of the amino acid sequence necessary for binding with Smad appears to be a 51 aa domain encompassing aa 166-216 of SEQ ID NO 2 having the amino acid sequence as depicted in the one letter code: QHLGVGMEAPLLGFPTMNSNLSEVQKVLQIVDNTVSRQKMDCKTEDISKLK.

Description: Smad-interacting polypeptides and their use The present invention relates to Smad - interacting polypeptides (so-called SIP's) such as cofactors for Smad proteins and the use thereof. The development from a single cell to a fully organized organism is a complex process wherein cell division and differentiation are involved. Certain proteins play a central role in this process. These proteins are divided into different families of which the transforming growth factor β (TGF-β) family of ligands, their serine/threonine kinase (STK) receptors and their signalling components are undoubtedly key regulatory polypeptides. Members of the TGF-β superfamily have been documented to play crucial roles in early developmental events such as mesoderm formation and gastrulation, but also at later stages in processes such as neurogenesis, organogenesis, apoptosis and establishment of left-right asymmetry. In addition, TGF-β ligands and components of their signal transduction pathway have been identified as putative tumor suppressors in the adult organism. Recently, Smad proteins have been identified as downstream targets of the serine/threonine kinase (STK) receptors (Massague,1996, Cell,85, p. 947-950). These Smad proteins are signal transducers which become phosphoryiated by activated type I receptors and thereupon accumulate in the nucleus where they may be involved in transcriptional activation. Smad proteins comprise a family of at least 5 subgroups which show high cross-species homology. They are proteins of about 450 amino acids (50-60kDa) with highly conserved N-terminal and C-terminal domains linked by a variable, proline-rich, middle region. On the basis of experiments carried out in cell lines or in Xenopus embryos, it has been suggested that the subgroups define distinct signalling pathways: Smadl mediates BMP2/4 pathways, while Smad2 and Smad3 act in TGF-β / activin signal transduction cascades. It has been demonstrated that these Smads act in a complex with Smad4 (dpc-4) to elicit certain activin, bone morphogenetic protein (BMP) or TGF-β responses (Lagna et al., 1996, Nature, 383, p.832-836 and Zhang et al., 1996, Nature,383, p.168-172). Smad proteins have a three-domain structure and their highly conserved carboxyl domain (C-domain) is necessary and sufficient for Smad function in the nucleus. The concept that this domain of Smad proteins might interact with transcription factors in order to regulate transcription of target genes has previously been put forward (Meersseman et al, 1997, Mech.Dev., 61 , p.127-140). This hypothesis has been supported by the recent identification of a new winged-helix transcription factor (FAST1 ) which forms an activin-dependent complex with Smad2 and binds to an activin responsive element in the Mix-2 promotor (Chen et al. , Nature 383, p. 691- 696, 1996). However, cofactors for Smad proteins other than FAST 1 have not been identified yet. Beyond the determination of the mechanism of activation of Ser/Thr kinase receptors and Smad, and the heteromehzation of the latter, little is known about other downstream components in the signal transduction machinery. Thus, understanding how cells respond to TGF-β related ligands remains a crucial central question in this field. In order to clearly demonstrate that Smad proteins might have a function in transcriptional regulation -either directly or indirectly- it is necessary to identify putative co-factors of Smad proteins, response elements in target genes for these Smad proteins and/or co-factors, and to investigate the ligand-dependency of these activities. To understand those interactions molecular and developmental biology research on (i) functional aspects of the ligands, receptors and signaling components (in particular members of the Smad family), in embryogenesis and disease, (ii) structure-function analysis of the ligands and the receptors, (iii) the elucidation of signal transduction, (iv) the identification of cofactors for Smad (related) proteins and (v) ligand-responsive genes in cultured cell and the Drosophila, amphibian, fish and murine embryo are all of utmost importance. I It is our invention that by carrying out a two hybrid screening assay (Chien et al., 1991 , PNAS.88, p.9578-9582) SMAD interacting protein(s) are obtainable whereby Smad C-domain fused to a DNA-binding domain as bait and a vertebrate cDNA library as prey respectively are used. It is evident for those skilled in the art that other appropriate cDNA libraries can be used as well. By using for instance Smadl C-domain fused to GAL4 DNA-binding domain and a mouse embryo cDNA as bait and prey respectively, a partial Smad4 and other Smad-interacting protein (SIP) cDNAs, including SIP1 , were obtained. Surprisingly it has been found that at least four SMAD interacting proteins thus obtained contain a DNA binding zinc finger domain. One of these proteins, SIP1 , is a novel member of the family of zinc finger/homeodomain proteins containing δ-crystallin enhancer binding protein and certain Drosophila zfh-1 , the former of which has been identified as a DNA-binding repressor. It has been shown that one DNA binding domain of SIP1 (the C-terminal zinc finger cluster or SIPI^) binds to E2 box regulatory sequences and to the Brachyury protein binding site. It has been demonstrated in cells that SIP1 interferes with E2 box and Brachyury- mediated transcription activation. SIP1 fails to interact with full-size Smad in yeast. It is shown for the first time that Smad proteins can interact with a DNA-binding repressor and as such may be directly involved in TGF-β ligand-controlled repression of target genes which are involved in the strict regulation of normal early development. In summary some characteristics of SIP 1 are the following: a) it fails to interact with full size XSmadl in yeast b) it is a new member of the family of zinc finger/homeodomain proteins including δ-crystallin enhancer binding protein and/or Drosophila zfh-1 c) SIPI^ binds to E2 box sites d) SlPI^- f binds to the Brachyury protein binding site e) it interferes with Brachyury-mediated transcription activation in cells and f) it interacts with C-domain of Smad 1 , 2 and/or 5 With E2 box sites is meant a -CACCTG- regulatory conserved nucleotide sequence which contains the binding site CACCT for δ-crystallin enhancer binding proteins as described in Sekido et al, 1996, Gene, 173, p.227-232. These E2 box sites are known targets for important basic helix-loop-helix (bHLH) factors such as MyoD , a transcription factor in embryogenesis and myogenesis. So, the SIP1 according to the invention (a zinc finger/homeodomain protein) binds to specific sites in the promoter region of a number of genes which are relevant for the immune response and early embryogenesis and as such may be involved in transcriptional regulation of important differentiation genes in significant biological processes such as cell growth and differentiation, embryogenesis, and abnormal cell growth including cancer. Part of the invention is also an isolated nucleic acid sequence comprising the nucleotide sequence as provided in SEQ ID NO 1 coding for a SMAD interacting protein or a functional fragment thereof. Furthermore a recombinant expression vector comprising said isolated nucleic acid sequence (in sense or anti-sense orientation) operably linked to a suitable control sequence belongs to the present invention and cells transfected or transduced with a recombinant expression vector as well. The current invention is not limited to the exact isolated nucleic acid sequence comprising the nucleotide sequence as mentioned in SEQ ID NO 1 but also a nucleic acid sequence hybridizing to said nucleotide sequence as provided in SEQ ID NO 1 or a functional part thereof and encoding a Smad interacting protein or a functional fragment thereof belongs to the present invention. To clarify with "hybridization" is meant conventional hybridization conditions known to the skilled person, preferably appropriate stringent hybridization conditions. Hybridization techniques for determining the complementarity of nucleic acid sequences are known in the art. The stringency of hybridization is determined by a number of factors during hybridization including temperature, ionic strength, length of time and composition of the hybridization buffer. These factors are outlined in, for example, Maniatis et al. (1982) Molecular Cloning; A laboratory manual (Cold Spring Harbor Press, Cold Spring Harbor, N.Y.). Another aspect of the invention is a polypeptide comprising the amino acid sequence according to SEQ. ID. NO 2 or a functional fragment thereof. To the scope of the present invention also belong variants or homologues of amino acids enclosed in the polypeptide wherein said amino acids are modified and/or substituted by other amino acids obvious for a person skilled in the art. For example post-expression modifications of the polypeptide such as phosphorylations are not excluded from the scope of the current invention. The polypeptide or fragments thereof are not necessarily translated from the nucleic acid sequence according to the invention but may be generated in any manner, including for example, chemical synthesis or expression in a recombinant expression system. Generally "polypeptide" refers to a polymer of amino acids and does not refer to a specific length of the molecule. Thus, linear peptides, cyclic or branched peptides, peptides with non-natural or non-standard amino acids such as D-amino acids, omithine and the like, oiigopeptides and proteins are all included within the definition of polypeptide. The terms "protein" and "polypeptide" used in this application are interchangeable. "Polypeptide" as mentioned above refers to a polymer of amino acids (amino acid sequence) and does not refer to a specific length of the molecule. Thus peptides and oiigopeptides are included within the definition of polypeptide. This term does also refer to or include post-translational modifications of the polypeptide, for example, glycosylations, acetylations, phosphorylations and the like. Included within the definition are, for example, polypeptides containing one or more analogs of an amino acid (including, for example, unnatural amino acids, etc.), polypeptides with substituted linkages, as well as other modifications known in the art, both naturally occurring and non-naturally occurring. "Control sequence" refers to regulatory DNA sequences which are necessary to affect the expression of coding sequences to which they are ligated. The nature of such control sequences differs depending upon the host organism. In prokaryotes, control sequences generally include promoter, ribosomal binding site, and terminators. In eukaryotes generally control sequences include promoters, terminators and, in some instances, enhancers, transactivators, transcription factors or 5' and 3' untranslated cDNA sequences. The term "control sequence" is intended to include, at a minimum, all components the presence of which are necessary for expression, and may also include additional advantageous components. "Operably linked" refers to a juxtaposition wherein the components so described are in a relationship permitting them to function in their intended manner. A control sequence "operably linked" to a coding sequence is ligated in such a way that expression of the coding sequence is achieved under conditions compatible with the control sequences. In case the control sequence is a promoter, it is obvious for a skilled person that double-stranded nucleic acid is used. "Fragment of a sequence" or "part of a sequence" means a truncated sequence of the original sequence referred to. The truncated sequence (nucleic acid or protein sequence) can vary widely in length; the minimum size being a sequence of sufficient size to provide a sequence with at least a comparable function and/or activity of the original sequence referred to, while the maximum size is not critical. In some applications, the maximum size usually is not substantially greater than that required to provide the desired activity and/or function(s) of the original sequence. Typically, the truncated amino acid sequence will range from about 5 to about 60 amino acids in length. More typically, however, the sequence will be a maximum of about 50 amino acids in length, preferably a maximum of about 30 amino acids. It is usually desirable to select sequences of at least about 10, 12 or 15 amino acids, up to a maximum of about 20 or 25 amino acids. A pharmaceutical composition comprising above mentioned nucleic acid(s) or a pharmaceutical composition comprising said polypeptide(s) are another aspect of the invention. The nucleic acid and/or polypeptide according to the invention can be optionally used for appropriate gene therapy purposes. In addition, a method for diagnosing, prognosis and/or follow-up of a disease or disorder by using the nucleic acid(s) according to the invention or by using the polypeptide(s) also form an important aspect of the current invention. Furthermore in the method for diagnosing, prognosis and/or follow-up of a disease or disorder an antibody .directed against a polypeptide or fragment thereof according to the current invention, can also be conveniently used. As used herein, the term "antibody" refers, without limitation, to preferably purified polyclonal antibodies or monoclonal antibodies, altered antibodies, univalent antibodies, Fab proteins, single domain antibodies or chimeric antibodies. In many cases, the binding phenomena of antibodies to antigens is equivalent to other ligand/anti-ligand binding. The term "antigen" refers to a polypeptide or group of peptides which comprise at least one epitope. "Epitope" refers to an antibody binding site usually defined by a polypeptide comprising 3 amino acids in a spatial conformation which is unique to the epitope, generally an epitope consists of at least 5 such amino acids and more usually of at least 8-10 such amino acids. A diagnostic kit comprising a nucleic acid(s) sequence and/or a polypeptide(s) or antibodies directed against the polypeptide or fragment thereof according to the invention for performing above mentioned method for diagnosing a disease or disorder clearly belong to the invention as well. Diseases or disorders in this respect are for instance related to cancer, malformation, immune or neural diseases, or bone metabolism related diseases or disorders. In addition a disease affecting organs like skin, lung, kidney, pancreas, stomach, gonad, muscle or intestine can be diagnosed as well using the diagnostic kit according to the invention. Using the nucleic acid sequences of the invention as a basis, oligomers of approximately 8 nucleotides or more can be prepared, either by excision or synthetically, which hybridize for instance with a sequence coding for SIP or a functional part thereof and are thus useful in identification of SIP in diseased individuals. The so-called probes are of a length which allows the detection of unique sequences of the compound to detect or determine by hybridization as defined above. While 6-8 nucleotides may be a workable length, sequences of about 10 -12 nucleotides are preferred, and about 20 nucleotides appears optimal. The nucleotide sequence may be labeled for example with a radioactive compound, biotin, enzyme, dye stuff or metal sol , fluorescent or chemiluminescent compound. The probes can be packaged into diagnostic kits. Diagnostic kits include the probe nucleotide sequence, which may be labeled; alternatively, said probe may be unlabeled and the ingredients for labeling may be included in the kit in separate containers so that said probe can optionally be labeled. The kit may also contain other suitably packaged reagents and materials needed for the particular hybridization protocol, for example, standards, wash buffers, as well as instructions for conducting the test. The diagnostic kit may comprise an antibody, as defined above, directed to a polypeptide or fragment thereof according to the invention in order to set up an immunoassay. Design of the immunoassay is subject to a great deal of variation, and the variety of these are known in the art. Immunoassays may be based, for example, upon competition, or direct reaction, or sandwich type assays. An important aspect of the present invention is the development of a method of screening for compounds (chemically synthesized or available from natural sources) which affect the interaction between SMAD and SIP's having the current knowledge of the SMAD interacting polypeptides (so called SIP's such as SIP1 or SIP2 as specifically disclosed herein). A transgenic animal harbouring the nucleic acid(s) according to the invention in its genome also belong to the scope of this invention. Said transgenic animal can be used for testing medicaments and therapy models as well. With transgenic animal is meant a non-human animal which have incorporated a foreign gene (called transgene) into their genome; because this gene is present in germ line tissues, it is passed from parent to offspring establishing lines of transgenic animals from a first founder animal. As such transgenic animals are recognized as specific species variants or strains, following the introduction and β integration of new gene(s) into their genome. The term "transgenic" has been extended to chimeric or "knockout" animals in which gene(s), or part of genes, have been selectively disrupted or removed from the host genome. Depending on the purpose of the gene transfer study, transgenes can be grouped into three main types: gain-of-f unction, reporter function and loss-of-function. The gain-of-function transgenes are designed to add new functions to the transgenic individuals or to facilitate the identification of the transgenic individuals if the genes are expressed properly (including in some cell types only) in the transgenic individuals. The reporter gene is commonly used to identify the success of a gene transfer effort. Bacterial chloramphenicol acetyltransferase (CAT), β-galactosidase or luciferase genes fused to functional promoters represent one type of reporter function transgene. The loss-of-function transgenes are constructed for interfering with the expression of host genes. These genes might encode an antisense RNA to interfere with the posttranscriptional process or translation of endogenous mRNAs. Alternatively, these genes might encode a catalytic RNA (a ribozyme) that can cleave specific mRNAs and thereby cancel the production of the normal gene product. Optionally loss of function transgenes can also be obtained by over-expression of dominant-negative variants that interfere with activity of the endogenous protein or by targeted inactivation of a gene , or parts of a gene, in which usually (at least a part of) the DNA is deleted and replaced with foreign DNA by homologous recombination. This foreign DNA usually contains an expression cassette for a selectable marker and/or reporter. It will be appreciated that when a nucleic acid construct is introduced into an animal to make it transgenic the nucleic acid may not necessarily remain in the form as introduced. By "offspring" is meant any product of the mating of the transgenic animal whether or not with another transgenic animal, provided that the offspring carries the transgene. To the scope of the current invention also belongs a SMAD interacting protein characterized in that: a) it interacts with full size XSmadl in yeast b) it is a member of a family of proteins which contain a cluster of 5 CCCH-type zinc fingers including Drosophila "Clipper" and Zebrafish "No arches" c) it binds single or double stranded DNA d) it has an RNase activity e) it interacts with C-domain of Smadl , 2 and/or 5. Part of the invention is also a method for post-transcriptional regulation of gene expression by members of the TGF-β superfamily by manipulation or modulation of the interaction between Smad function and/or activity and mRNA stability. The current invention is further described in detail hereunder for sake of clarity. Yeast two-hybrid cloning of Smad-interactinq proteins In order to identify cofactors for Smadl , a two-hybrid screening in yeast was carried out using the XSmadl C-domain fused to GAL4 DNA-binding domain (GAL4 DBD ) as bait, and a cDNA library from mouse embryo (12.5 dpc) as a source of candidate preys. The GAL4 DBD -Smad1 bait protein failed to induce in the reporter yeast strain GAL4-dependent HIS3 and LacZ transcription on its own or in conjunction with an empty prey plasmid. Screening of 4 million yeast transformants identified about 500 colonies expressing HIS3 and LacZ. The colonies displaying a phenotype which was dependent on expression of both the prey and the bait cDNAs, were then characterized. Plasmids were rescued and the prey cDNAs sequenced (SEQ ID NO's 1-20 of the Sequence Listing enclosed; for each nucleic acid sequence only one strand is depicted in the Listing). Four of these (th1 , th12, th76 and th74 respectively also denominated in this application as SIP1 , SIP2, SIP5 and SIP7 respectively) are disclosed in detail (embedded in SEQ ID NO 1 , 2, 3, 4, 10 and 8 respectively). One (th72= combined SEQ ID NO 6 and 7) encodes a protein in which the GAL4 transactivation domain (GAL4 TAD ) is fused in-frame to a partial Smad4 cDNA, which starts at amino acid (aa) 252 in the proline-rich domain. Smad4 has been shown to interact with other Smad proteins, but no Smad has been picked-up thusfar in a two-hybrid screen in yeast, using the C-domain of another Smad as bait. ■ ΛO These data suggest that the N-domain of both interacting Smad proteins, as well as part of (Smad4) or the entire (Smadl ) proline-rich domain, is dispensable for heterodimeric interaction between Smad proteins, at least when using a two-hybrid assay in yeast. The cDNA insert of the second positive prey plasmid, th1 (embedded in SEQ ID NO 1 ), encodes a protein in which the GAL4 TAD -coding sequence is fused in- frame to about a 1.9 kb-long th1 cDNA, which encodes a polypeptide SIP1 (Th1) of 626 aa. Data base searches revealed that SIP1 (Th1 ) contained a homeodomain- like segment, and represents a novel member of a family of DNA-binding proteins including vertebrate δ-crystallin enhancer binding proteins (δ-EF1 ) and Drosophila zfh-1. These zinc finger/ homeodomain-containing transcription factors are involved in organogenesis in mesodermal tissues and/or development of the nervous system. The protein encoded by th1 cDNA is a Smad interacting protein (SIP) and was named SIP1 (TH1). SIP1 Characterization of SIP1-Smad interaction in yeast and in vitro The binding of SIP1 (TH1 ) to full-size XSmadl and modified C-domains was tested. The latter have either an amino acid substitution (G418S) or a deletion of the last 43 aa (Δ424-466). The first renders the Smad homolog in Drosophila Mad inactive and abolishes BMP-dependent phosphorylation of Smadl in mammalian cells. A truncated Mad, similar to mutant Δ424-466, causes mutant phenotypes in Drosophila, while a similar truncation in Smad4 (dpc-4) in a loss-of-heterozygosity background is associated with pancreatic carcinomas. SIP1 (TH1) does neither interact with full-size XSmadl , nor with mutant Δ424-466. The absence of any detectable association of full-size XSmadl was not due to inefficient expression of the latter in yeast, since one other Smad-interacting prey (th12) efficiently interacted with the full-length Smad bait. Lack of association of SIP1 (TH1 ) with full-size XSmadl in yeast follows previous suggestions that the activity of the Smad C- domain is repressed by the N-domain, and that this repression is eliminated in mammalian cells by incoming BMP signals. The G418S mutation in the C-domain of Smad 1 does not abolish interaction with SIP1 , suggesting that this mutation affects AΛ another aspect of Smadl function. The ability of the full-size G418S Smad protein to become functional by activated receptor STK activity may thus be affected, but not the ability of the G418S C-domain to interact with downstream targets. This indicates that activation of Smad is a prerequisite for and precedes interaction with targets such as SIP1. The deletion in mutant Δ424-466 includes three conserved and functionally important serines at the C-terminus of Smad which are direct targets for phosphorylation by the activated type I STK receptor. The C-domains of Smadl and Smad2 induce ventral or dorsal mesoderm, respectively, when overexpressed individually in Xenopus embryos, despite their very high degree of sequence conservation. Very recently, Smadδ has been shown to induce ventral fates in the Xenopus embryo. To investigate whether the striking differences in biological activity of Smadl , -5 and Smad2 could be due to distinct interactions with cofactors, the ability of SIP1 (TH1 ) protein to interact with the C- domains of Smadl , -5 and Smad2 in a yeast two-hybrid assay was tested. SIP1 (TH1 ) was found to interact in yeast with the C-domain of all three Smad members. Then the interaction of SIP1 with different Smad C-domains in vitro was investigated, using glutathione-S-transferase (GST) pull-down assays. GST-Smad fusion proteins were produced in E. Coli and coupled to glutathione-Sepharose beads. An unrelated GST fusion protein and unfused GST were used as negative controls. Radio-labeled, epitope-tagged SIP1 protein was successfully produced in mammalian cells using a vaccinina virus (T7W)-based system. Using GST-Smad beads, this SIP1 protein was pulled down from cell lysates, and its identity was confirmed by Western blotting. Again, as in yeast, it was found that SIP1 is a common binding protein for different Smad C-domains, suggesting that SIP1 might mediate common responses of cells to different members of the TGF-β superfamily. Alternatively, Smad proteins may have different affinities for SIP1 in vivo, or other mechanisms might determine the specificity, if any, of Smad-SIP1 interaction. SIP1 is a new member of zinc finger/homeodomain proteins of the δEF-1 family Additional SIP1 open reading frame sequences were obtained by a combination of cDNA library screening with 5'RACE-PCR. The screening yielded a 3.2 kb-long SIP1 cDNA (tw6), which overlaps partially with th1 cDNA. The open reading frame of SIP1 -ft protein encodes 944 aa (SEQ ID NO 2 ), and showed homology to certain regions in δ-EF1 , ZEB, AREB6, BZP and zfh-1 proteins, and strikingly similar organisation of putative functional domains. Like these proteins, SIP1 contains two zinc finger clusters separated by a homeodomain and a glutamic acid-rich domain. Detailed comparisons reveal that SIP1 is a novel and divergent member of the two-handed zinc finger/homeodomain proteins. As in δ-EF1 , three of the five residues that are conserved in helix 3 and 4 of all canonical homeodomains are not present in SIP1. SIP1 (Th1 ) which contains the homeodomain but lacks the C-terminal zinc finger cluster and glutamic acid-rich sequence, interacts with Smad. This interaction is maintained upon removal of the homeodomain-like domain, indicating that a segment encoding aa 44-236 of SIP1 (numbering according to SEQ.ID.NO.2) is sufficient for interaction with Smad. To narrow this domain further down, progressive deletion mutants, starting from the N-terminus, as well as the C-terminus of this 193 aa region were made. Progressive 20 aa deletion constructs were generated by PCR. Two restriction sites (5' end Smal site, 3' end Xhol site) were built in to allow cloning of amplified sequences in the yeast two hybrid bait vector pACT2 (Clontech). An extensive two hybrid experiment was performed with these so-called SBD mutant constructs as a prey and the XSmadl C-domain as bait. The mutant SBD constructs that encoded aa 166-236 (of SEQ ID NO 2) or aa 44-216 were still able to interact with the bait plasmid, whereas mutant constructs encoding aa 186-236 or aa 44-196 could not interact with the bait. In this way, the smallest domain that still interacts with the XSmadl C-domain was defined as a 51 aa domain encompassing aa 166- 216 of SEQ ID NO 2. The amino acid sequence of said SBD, necessary for the interaction with Smad, thus is (depicted in the one-letter code): QHLGVGMEAPLLGFPTMNSNLSEVQKVLQIVDNTVSRQKMDCKTEDISKLK Deletion of an additional 20 aa at the N-or C-terminal end of this region disrupted the Smad binding activity. Subsequently, this 51 aa region was deleted in the context of SIP1 protein, again using a PCR based approach, generating an Ncol restriction site at the position of the deletion. This SIP1 ΔSBD51 was not able to interact with the -<-} Smad C-domain any longer, as assayed by a "mammalian pull down assay". In these experiments, SIP1 , myc-tagged at its N-terminal end was expressed in COS-1 cells together with a GST-XSmad1 C-domain fusion protein. Myc-SIP1 protein was co-purified from cell extracts with the GST-XSmad1 C-domain fusion protein using gluthatione-sepharose beads, as was demonstrated by Western blotting using anti- myc antibody. Deletion of the 51 aa in SIP1 abolished the interaction, as detected in this assay, with the XSmadl C-domain. (see figure 1 ). Analysis of the DNA-binding activity of the C-terminal zinc finger cluster of SIP1. δ-EF1 is a repressor that regulate the enhancer activity of certain genes. This repressor binds to the E2 box sequence (5'-CACCTG) which is also a binding site for a subgroup of basic helix-loop-helix (bHLH) activators (Sekido, R et al., 1994, Mol.Cell.Biol.-14, p.5692-5700). Interestingly, the CACCT sequence which has been shown to bind δ-EF1 is also part of the consensus binding site for Bra protein. It has been proposed that cell type-specific gene expression is accomplished by competitive binding to CACCT sequences between repressors and activators. δ-EF1 mediated repression could be the primary mechanism for silencing the IgH enhancer in non-B cells. δ-EF1 is also present in B-cells, but is counteracted by E2A, a bHLH factor specific for B-cells. Similarly, δ-EF1 represses the lgκ enhancer where it competes for binding with bHLH factor E47. The C-terminal zinc finger cluster of δEF-1 is responsible for binding to E2 box sequences and for competition with activators. Considering the high sequence similarities in this region between SIP1 and δ-EF1 , it was decided to test first whether both proteins have similar DNA binding specificities, using gel retardation assays. Therefore, the DNA-binding properties of the C-terminal zinc finger cluster of SIP1 (named SIP1 CZF ) was analyzed. SIP1 CZF was efficiently produced in and purified from E. coli as a short GST fusion protein. Larger GST-SIP1 fusion proteins were subject to proteolytic degradation in E. coli . Purified GST-SIP1 CZF was shown to bind to the E2 box of the IgH κE2 enhancer. A mutation of this site (Mut1 ), which was shown previously to affect the binding of the bHLH factor E47 but not δ-EF1 , did not affect binding of SIP1 CZF . Two other mutations in this κE2 site (Mut2 and Mut4, respectively) have been shown to abolish binding of δ-EF1 (Sekido et al., 1994) and did so in the case of SIP1 CZF . In addition, also the binding of SIP1 CZF to the Nil-2A binding site of the interleukin-2 promoter, the Bra protein binding site and the AREB6 binding site were demonstrated. The specificity of the binding of SIP1 CZF to the Bra binding site was further demonstrated in competition experiments. Binding of SIP1 CZF to this site was competed by excess unlabeled Bra binding site probe, while κE2 wild type probe competes, albeit less efficiently than its variant Mut1 , which is a very strong competitor. κE2-Mut2 and κE2-Mut4 failed to compete, as did the GATA-2 probe, while the AREB6 site competed very efficiently. From these experiments can be concluded that GST-SIP1 CZF fusion protein displays the same DNA binding specificity as other GST fusion proteins made with the CZF region of δ-EF1 and related proteins (Sekido et al., 1994). In addition, it was demonstrated for the first time that SIP1 binds specifically to regulatory sequences that are also target sites for Bra. This may be the case for the other δ-EF1 -related proteins as well and these may interfere with Bra-dependent gene activation in vivo. Analyses were done to sites recognized by the bHLH factor MyoD. MyoD has been shown to activate transcription from the muscle creatine kinase (MCK) promoter by binding to E2 box sequences (Weintraub et al., 1994, Genes Dev.,8, p.2203-2211 ; Katagiri et al., 1997, Exp.Cell Res. 230, p. 342-351 ). Interestingly, δ- EF1 has also been demonstrated to repress MyoD-dependent activation of the muscle creatine kinase enhancer, as well as myogenesis in 10T 1 / 2 cells, and this is thought to involve E2 boxes (Sekido et al., 1994). In addition, TGF-β and BMP-2 have been reported to downregulate the activity of muscle-specific promoters, and this inhibitory effect is mediated by E2 boxes (Katagiri et al., 1997). The latter are present in the regulatory regions of many muscle-specific genes, are required for muscle-specific expression, and are optimally recognized by heterodimers between myogenic bHLH proteins (of the MyoD family) and of widely expressed factors like E47. SIP1 CZF was able to bind to a probe that encompasses the MCK enhancer E2 box and this complex was competed by the E2 box oligonucleotide and by other SIP1 binding sites. In addition, a point mutation within this E2 box that is similar to the previously used κE2-Mut4 site also abolished binding of SIPI^. These results - S confirm that SIPI^ binds to the E2 box of the MCK promoter. SIP1 , as Smad- interacting and MCK E2 box binding protein, may therefore represent the factor that mediates the TGF-β and BMP repression of the MyoD-regulated MCK promoter (Katagiri et al., 1997). SIP1 is a BMP-dependent repressor of Bra activator The experiments have demonstrated that SIP1 CZF binds to the Bra protein binding site, IL-2 promoter, and to E2 boxes, the latter being implicated in BMP or TGF-β- mediated repression of muscle-specific genes. These observations prompted therefore to test whether SIP1 (as SIPI-^) is a BMP-regulated repressor. A reporter plasmid containing a SIP1 binding site ( the Bra protein binding site) fused to the luciferase gene was constructed. COS cells, maintained in low serum (0.2%) medium during the transfection, were used in subsequent transient transfection experiments since they have been documented to express BMP receptors and support signaling (Hoodless et al., 1996,CeII, 85, p.489-500). It was found in the experiment that SIPI-^ is not able to change the transactivation activity of Bra protein via the Bra binding site. In addition, no transactivation of this reporter plasmid by SIPI-^ could be detected in the presence of 10% or 0.2% serum, and in the absence of Bra expression vector. Therefore, identical experiments were carried out in which the cells were exposed to BMP-4. SIP1- TW6 repressed the Bra-mediated activation of the reporter. It does this in a dose-dependent fashion (amount of SIPI-^ plasmid, concentration of BMP-4). Total repression has not been obtained in this type of experiment, because the transfected COS cells were exposed only after 24 hours to BMP-4. Consequently, luciferase mRNA and protein accumulate during the first 24 hours of the experiment as the result of Brachyury activity. The conclusion from these experiments clearly shows that SIP1 is a repressor of Bra activator, and its activity as repressor is detected only in the presence of BMP. It is important that SIP1 has not been found to be an activator of transcription via Bra target sites. This is interesting, since the presence in δ-EF1-like proteins of a polyglutamic acid-rich stretch (which is also present in SIPI-^ used here) has led previously to the speculation that these repressors might act as transcriptional activators as well. In particular, AREB6 has -A6 been shown to bind to the promoter of the housekeeping gene Na,K- ATPase α-1 and to repress gene expression dependent on cell type and on the context of the binding site (Watanabe et al., 1993, J.Biochem.,114, p. 849-855). SIP1 mRNA expression in mice Northern analysis demonstrated the presence of a major SIP1 6 kb mRNA in the embryo and several tissues of adult mice, with very weak expression in liver and testis. A minor 9 kb-long transcript is also detected, which is however present in the 7 dpc embryo. In situ hybridization documented SIP1 transcription in the 7.5 dpc embryo in the extraembryonic and embryonic mesoderm. The gene is weakly expressed in embryonic ectoderm. In the 8.5 dpc embryo, very strong expression is seen in extraembryonic mesoderm (blood islands), neuroepithelium and neural tube, the first and second branchial arches, the optic eminence, and predominantly posterior presomitic mesoderm. Weaker but significant expression is detected in somites and notochord. Between day 8.5 and 9.5, this pattern extends clearly to the trigeminal and facio-acoustic neural crest tissue. Around midgestation, the SIP1 gene is expressed in the dorsal root ganglia, spinal cord, trigeminal ganglion, the ventricular zone of the frontal cortex, kidney mesenchyme, non-eptihelial cells of duodenum and midgut, pancreatic primordium, urogenital ridge and gonads, the lower jaw and the snout region, cartilage primordium in the humerus region, the primordium of the clavicle and the segmental precartilage sclerotome-derived condensations along the vertebral axis. SIP1 mRNA can also be detected in the palatal shelf, lung mesenchyme, stomach and inferior ganglion of vagus nerve. In addition, primer extension analysis has demonstrated the presence of SIP1 mRNA in embryonic stem cells. It is striking that the expression of SIP1 in the 8.5 dpc embryo in the blood islands and presomitic mesoderm coincides with tissues affected in BMP-4 knockout mice, which have been shown to die between 6.5 and 9.5 dpc with a variable phenotype. These surviving till later stages of development showed disorganized posterior structures and a reduction in extraembryonic mesoderm, including blood islands (Winnier et al., 1995, Genes Dev.,9, 2105-2116). The mRNA expression of δ-EF1 proteins has been documented as well. In mouse, δ-EF1 mRNA has been detected in mesodermal tissues such as notochord, Al- somites and nephrotomes, and in other sites such as the nervous sytem and the lens in the embryo (Funahashi et al., 1993, Development, 119, p.433-446). In adult hamster, δ-EF1 mRNA has been detected in the cells of the endocrine pancreas, anterior pituitary and central nervous system (Franklin et al., 1994, Mol.Cell.Biol.,14, p. 6773-6788). The majority of these δ-EF1 and SIP1 expression sites overlap with sites where the restricted expression pattern of certain type I STK receptors (such as ALK-4/ActR-IA, and ALK-6/BMPR-IB) has been documented (Verschueren et al., 1995, Mech.Dev.,52, p.109-123). SIP2 Characterization of SIP2 SIP2 was picked up initially as a two hybrid clone of 1052 bp (th12) that shows interaction in yeast with Smadl , 2 and 5 C-terminal domains and full-size Smadl Using GST-pull down experiments (as described for SIP1 ) also an interaction with Smadl , 2 and 5 C-terminal domains in vitro have been demonstrated. a) S1P2 full length sequence Th12 showed high homology to a partial cDNA (KIAA0150) isolated from the human myoloblast cell line KG1. However, this human cDNA is +/- 2 kb longer at the 3' end of th12. Using this human cDNA, an EST library was screened and mouse EST were detected homologous to the 3'end of KIAA0150 cDNA. Primers were designed based on th12 sequence and the mouse EST found to amplify a cDNA that contains the stop codon at the 3'end. 5' sequences encompassing the start codon was obtained using 5'RACE-PCR . Gene bank accession numbers for the mentioned EST clones used to complete the SIP2 open reading frame: Human KIAA0150 ; D63484 A9 Mouse EST sequence; Soares mouse p3NMF19.5; W82188, Primers used to reconstitute SIP2 open reading frame: based on th12 sequence: F3th12F (forward primer) 5'-cggcggcagatacgcctcctgca based on EST sequence: th12mouse1 (reverse primer) 5'-caggagcagttgtgggtagagccttcatc Primers used for 5'-race; all are reverse primers derived from th12 sequence 1 : 5'-ctggactgagctggacctgtctctccagtac 2 : 5'-cacaagggagtatttcttgcgccacgaagg 3: 5'-gccatggtgtgaggagaagc The full size SIP2 deduced from the assembly of these sequences contains 950 amino acids as depicted in SEQ ID NO.4, while the nucleotide sequence is depicted in SEQ.ID.NO.3. b) SIP2 sequence homoloqies SIP2 contains a domain encompassing 5 CCCH type zinc fingers. This domain was found in other protein such as Clipper in Drosophila, No Arches in Zebrafish and CPSF in mammals. No Arches is essential for development of the branchial arches in Zebrafish and CPSF is involved in trancription termination and polyadenylation. The domain containing the 5 CCCH in Clipper was shown to have an EndoRNase activity (see below). c) SIP2 CCCH domain has an RNAse activity The domain containing the 5 CCCH -type zinc fingers of SIP2 was fused to GST and the fusion protein was purified from E.coli. This fusion protein displays a RNAse activity when incubated with labeled RNA produced in vitro. In addition, it has been shown that this fusion protein was able to bind single stranded DNA. In more detail : GST fusion proteins of SIP2 5xCCCH; PLAG1 (an unrelated zinc finger protein), SIP C z F (C-terminal zinc finger cluster of SIP1 ) and th1 (SIP1 partial polypeptide Al isolated in the two-hybrid screening), and cytoplasmatic tail of CD40 were produced in E.coli and purified using glutathione sepharose beads. Three 35 S labeled substrates, previously used to demonstrate the RNAse activity of Clipper, a related protein from Drosophila (Bai, C. and Tolias P.P. 1996, cleavage of RNA Hairpins Mediated by a Developmentally Regulated CCCH Zinc Finger Protein. Mol Cell. Biol. 16: 6661-6667) were produced by in vitro transcription. The RNA cleavage reactions with purified GST fusion proteins were performed in the presence of RNAsin (blocking RNAseA activity). Equal aliquots of each reaction were taken out at time points 1', 7', 15', 30', 60'. Degradation productes were separated on a denaturing polyacrylamide gel and visualized by autoradiography. These experiments demonstrated that GST-SIP2 5XCCCH has an RNAse activity and degrades all tested substrates, while GST-PLAG1 , GST-CD40, GST-SIP1 CZF and GST-th1 do not have this activity. d) Interaction between th12 (partial SIP2 polypeptide) and Smad C-domains in GST pull down experiments. C-domains of Xenopus (X)Smad1 and mouse Smad2 and 5 were produced in E. coli as fusion proteins with gluthatione S-transferase and coupled to gluthatione beads. An unrelated GST-fusion protein (GST-CD40 cytoplasmatic mail) and GST itself were used as negative controls. Th12 protein, provided with an HA-tag at its N-terminal end, was produced in Hela cells using the T7 vaccinia virus expression system and metabolicaily labeled. Expression of Th12 was confirmed by immune precipitation with HA antibody, followed by SDS-page and autoradiography. Th12 protein is produced as a ± 50 kd protein. Cell extracts prepared from Hela cells expressing this protein were mixed with GST-Smad C-domain beads in GST pull down buffer and incubated overnight at 4° C. The beads were then washed four times in the same buffer, the bound proteins eluted in Laemmli sample buffer and separated by SDS-PAGE. "Pulled down" th12 protein was visualized by Western blotting , using HA antibody. These experiments demonstrate that th12 is efficiently pulled down by GST-Smad C-domain beads, and not by GST-CD40 or GST alone. Z Conclusion on SIP2 SIP2 is a Smad interacting protein that contains a RNAse activity. The finding that Smads interact with potential RNAses provides an unexpected link between the TGF-β signal transduction and mRNA stabilisation. SIP5 Characterization of SIP5 One contiguous open reading frame is fused in frame to the GAL4 transactivating domain in the two hybrid vector pACT-2 (Clontech). This represents a partial cDNA, since no in frame translational stop codon is present. The sequence has no significant homology to anything in the database, but displays a region of high homology with following EST clones: Mouse: accession numbers: AA212269 ( Stratagene mouse melanom); AA215020 (Stratagene mouse melanom), AA794832 ( Knowles Solter mouse 2 c) and Human: accession numbers AA830033, AA827054, AA687275, AA505145, AA371063. Analysis of interaction of the SIP5 prey protein with different bait proteins (which are described in the data section obtained with SIP1 ) in a yeast two hybrid assay can be summarized as follows Empty bait vector pGBT9 Full length XSmadl + Xsmadl C-domain + Xsmadl C-domain with G418S substitution + Mouse Smad2 C-domain + Mouse Smadδ C-domain + Lamin (pLAM; Clontech) Zl SIP5 partial protein encoded by above described cDNA also interacts with Xsmadl , mouse Smad2 and 5 C-domains in vitro as analysed by the GST pull down assay (previously described for SIP1 and SIP2). Briefly, the partial SIP5 protein was tagged with a myc tag at its C-terminal end and expressed in COS-1 cells. GST- Smad C-domain fusion proteins, GST-CD40 cytoplasmatic tail and GST alone were expressed in E. coli and coupled to glutathione sepharose beads. These beads were subsequently used to pull down partial SIP5 protein from COS cell lysates, as was demonstrated after SDS-PAGE of pulled down proteins followed by Western blotting using anti myc antibody. In this assay, SIP5 was pulled down by GST-Xsmad1 , 2 and 5 C-domains, but not by GSTalone or GST-CD40. A partial, but coding, nucleic acid sequence for SIP5 is depicted in SEQ. ID. NO.10. SIP7 Characterization of SIP7 One contiguous open reading frame is fused in frame to the GAL4 transactivating domain in the two hybrid vector pACT2. This is a partial clone, since no in frame translational stop codon is present. Part of this clone shows homology to Wnt- 7b,accession number: M89802, but the clone seems to be a novel cDNA or a cloning artefact. The homology of the SIP7 cDNA with the known Wnt7-b cDNA starts at nucleotide 390 and extends to nucleotide 846. This corresponds to the nucleotides 74-530 in Wnt7-b coding sequences (with A of the translational start codon considered as nucleotide nr 1 ). In SIP7 cDNA this region of homology is preceded by a sequence that shows no homology to anything in the database. It is not clear whether the SIP7 cDNA is for example a new Wnt7-b transcript or whether it is a scrambled clone as a result of the fusion of two cDNAs during generation of the cDNA library. Analysis of the interaction of the SIP7 prey protein with different bait proteins in a yeast two hybrid assay can be summarized as follows: Z PGBT9 Full length XSmadl Xsmadl C-domain + Xsmadl C-domain, G418S + Xsmadl C-domain del aa 424-466 - Xsmadl N-terminal domain Mouse smad2 C-domain + Mouse Smadδ C-domain + Lamin (pLAM) SIP7 partial protein encoded by above described cDNA also interacts with Xsmadl , mouse Smad2 and 5 C-domains in vitro as analysed by the GST pull down assay, as descibed above for SIP5. In this assay, N-terminaliy myc-tagged SIP7 protein was specifically pulled down by GST-Xsmad1 , 2 and 5 C-domains, but not by GSTalone or GST-CD40. A partial, but coding, nucleic acid sequence for SIP7 is depicted in SEQ.ID.NO.8. General description of the methods used Plasmids and DNA manipulations Mouse Smadl and Smad2 cDNAs used in this study were identified by low stringency screening of oligo-dT primed λEx/ox cDNA library made from 12 dpc mouse embryos (Novagen), using Smadδ (MLP1.2 clone as described in Meersseman et al., 1997, Mech.Dev.,61 , p.127-140) as a probe. The same library was used to screen for full-size SIP1 , and yielded λExTW6. The tw6 cDNA was 3.6 kb long, and overlapped with th1 cDNA, but contained additional 3'-coding sequences including an in-frame stop codon. Additional 5' sequences were obtained by 5 * RACE using the Gibco-BRL δ' RACE kit. XSmadl full-size and C-domain bait plasmids were constructed using previously described EcoR\-Xho\ inserts(Meersseman et al.,1997, Mech.Dev.,61 , p.127-140), and cloned between the EcoRI and Sa/I sites of the bait vector pGBT-9 (Clontech), such that in-frame fusions with GAL4 DBD were obtained. Similar bait -S3 plasmids with mouse Smadl , Smad2 and Smadδ were generated by amplifying the respective cDNA fragments encoding the C-domain using Pfu polymerase (Stratagene) and primers with EcoRI and Xho\ sites. The G418S XSmadl C-domain was generated by oligonucleotide-directed mutagenesis (Biorad). To generate in-frame fusions of Smad C-domains with GST, the same Smad fragments were cloned in pGEX-δX-1 (Pharmacia). The phage T7 promoter-based SIP1 (TH1 ) construct for use in the T7VV system was generated by partial restriction of the th1 prey cDNA with BglU, followed by restriction with Sa/I, such that SIP1 (TH1 ) was lifted out of the prey vector along with an in-frame translational start codon, an HA-epitope tag of the flu virus, and a stop codon. This fragment was cloned into pGEM-3Z (Promega) for use in the T7W system. A similar strategy was used to clone SIP2 (th12) into pGEM-3Z. PolyA + RNA from 12.δ dpc mouse embryos was obtained with oligotex-dT (Qiagen). Randomly primed cDNA was prepared using the Superscript Choice system (Gibco-BRL). cDNA was ligated to an excess of Sfi double-stranded adaptors containing Stu\ and SamHI sites. To facilitate cloning of the cDNAs, the prey plasmid pAct (Clontech) was modified to generate pAct/Sfi-Sfi. Restriction of this plasmid with Sfi generates sticky ends which are not complementary, such that self-ligation of the vector is prevented upon cDNA cloning. A library containing 3.6x10 6 independent recombinant clones with an average insert size of 1 ,100 bp was obtained. Synthesis of SIP1 and GST pull-down experiments Expression of SIP1 (TH1 ) and SIP2 (TH12) in mammalian cells with the T7W system and the preparation of the cell lysates were as described previously (Verschueren, K et al.,199δ, Mech.Dev.,δ2, p.109-123). GST fusion proteins were expressed in E. coli (strain BL21) and purified on gluthathione-Sepharose beads (Pharmacia). The beads were washed first four times with PBS supplemented with protease inhibitors, and then mixed with δO μl of lysate (prepapred from T7W-infected SI P1 -expressing mammalian cells) in 1 ml of GST buffer (δO mM Tris-HCI pH 7.5, 120 mM NaCI, 2 mM EDTA, 0.1% (v/v) NP-40, and protease inhibitors). They were mixed at 4°C for 16 hours. Unbound proteins were »i removed by washing the beads four times with GST buffer. Bound proteins were harvested by boiling in sample buffer, and resolved by SDS-PAGE. Separated proteins were visualized using autoradiography or immunodetection after Western blotting; using anti-HA monoclonal antbody (12CAδ) and alkaline phosphatase- conjugated anti-mouse 2ary antibody (Amersham). EMSA(=electrophoretic mobility shift assay) The sequence of the κE2 WT and mutated κE2 oligonucleotides are identical as disclosed in Sekido et al; (1994, Mol.Cell.Biol.,14, p. δ692-δ700). The sequence of the AREB6 oligonucleotide was obtained from Ikeda et al;(199δ, Eur.J.Biochem, 233, p. 73-82). IL2 oligonucleotide is depicted in Williams et al;(1991 , Science, 2δ4, p.1791-1794). The sequence of Brachyury binding site is δ'-TGACACCTAGGTGTGAATT-3'. The negative control GATA2 oligonucleotide sequences originated from the endothelin promoter (Dorfman et al; 1992, J.Biol.Chem., 267, p. 1279-128δ). Double stranded oligonucleotides were labeled with polynucleotide kinase and 32 P γ-ATP and purified from a 1δ% polyacrylamide gel. Gel retardation assays were performed according to Sekido et al; (1994, Mol.Cell.Biol.,14, p. δ692-δ700). RESULTS OF TWO HYBRID SCREENING (Xsmadl C-domain bait versus 12.5 dpc mouse embryo library; 600.000 recombinant clones screened in 4x 10 6 yeasts). SIP 1 - Three independent clones isolated (th1 , th88 and th94) - Zinc-finger-homeodomain protein - Homology to δEF-1 (see above) - Interactions in yeast: XSmadl C-domain bait + Empty bait Lamin 15 XSmadl full length XSmadl N-domain mSmadl C-domain + mSmad2 C-domain + mSmadδ C-domain + XSmadl C-domain del 424-466 - XSmadl C-domain G418S + * Interaction with C-domain of XSmadl and mSmads confirmed in vitro using GST-pull downs and co-immunoprecipitations * Extended clone (TW6) isolated through library screening using th1 sequences as a probe * C-terminal TW6 zinc-finger cluster binds to E2 box sequences (cfr δEF-1 ), Brachyury T binding site, Brachyury promoter sequences SIP2 also called clone TH12- Three independent clones isolated (th12,th73,th93) Highly homologous to KIAAOIδO gene product, isolated from the myeloblast cell line KG1(Ref: Nagase et al. 199δ; DNA Res 2 (4) 167-174. - Interactions in yeast: XSmadl C-domain bait + Empty bait Lamin XSmadl full length + XSmadl N-domain ND mSmadl C-domain + mSmad2 C-domain + mSmadδ C-domain + XSmadl C-domain del 424-466 - XSmadl C-domain G418S + 6 TH60 - Two independent clones isolated (th60 and th77) - Zinc finger protein homology to snail (transcriptional repressor) and to ATBF1 (complex homeodomain zinc finger protein) - Interactions in yeast: XSmadl C-domain bait + Empty bait Lamin TH72 - One clone isolated - Encodes a partial DPC-4 (Smad4) cDNA (see above) - Interactions in yeast: XSmadl C-domain bait +++ Empty bait Lamin XSmadl full length ND XSmadl N-domain mSmadl C-domain +++ mSmad2 C-domain ND mSmadδ C-domain +++ XSmadl C-domain del 424-466 XSmadl C-domain G418S + SIP5 (also called clone th76). Analysis of interaction of the SIPδ prey protein with different bait proteins (which are described in the data section obtained with SIP1 ) in a yeast two hybrid assay can be summarized as follows Empty bait vector pGBT9 Full length XSmadl + Xsmadl C-domain + Xsmadl C-domain G418S + Mouse Smad2 C-domain + ^ Mouse Smadδ C-domain + Lamin (pLAM; Clontech) SIP7 (also called clone th74) Analysis of the interaction of the SIP7 prey protein with different bait proteins in a yeast two hybrid assay can be summarized as follows: PGBT9 Full length XSmadl Xsmadl C-domain + Xsmadl C-domain, G418S + Xsmadl C-domain del aa 424-466 Xsmadl N-terminal domain Mouse smad2 C-domain + Mouse Smadδ C-domain + Lamin (pLAM) The following clones have been investigated less extensively. They are considered as "true positives" because they interact with the XSmadl C-domain bait and not with the empty bait (i.e GAL-4 DBD alone) TH75: -Three independent clones isolated (th7δ, th83, th89) -Partial aa sequences do not show significant homology to proteins in the public databases - Interactions in yeast: XSmadl C-domain bait +++ Empty bait TH92: -Zinc finger protein -homology to KUP TH79, TH86, TH90, : Partial sequences do not display significant homology to any protein sequence in the public databases. Z Clones available in the sequence listing as conversion table from clone notation to seguence listing notation SIP 1 nucleotide sequence = SEQ ID NO 1 SIP 1 amino acid sequence = SEQ ID NO 2 SIP 2 nucleotide sequence = SEQ ID NO 3 SIP 2 amino acid sequence = SEQ ID NO 4 TH60(TH77) = SEQ ID NO δ TH72 (DPC4 or Smad4) = SEQ ID NO 6 TH72\R = SEQ ID NO 7 SIP 7(th74) = SEQ ID NO 8 TH7δF(TH83F,TH89F) = SEQ ID NO 9 SIP 5(th76) = SEQ ID NO 10 TH79F = SEQ ID NO 11 TH79R = SEQ ID NO 12 TH83R = SEQ ID NO 13 TH86F = SEQ ID NO 14 TH86R = SEQ ID NO 1δ TH89=TH7δR = SEQ ID NO 16 TH90F = SEQ ID NO 17 TH90R = SEQ ID NO 18 TH92F = SEQ ID NO 19 TH92R = SEQ ID NO 20 Z3 LEGEND TO FIGURE 1 XSmadl C-domain interacts with SIP1 in mammalian cells and deletion of the δ1 aa long SBD (Smad binding domain) in SIP1 abolishes the interaction. COS-1 cells were transiently transfected with expression constructs encoding N- terminally myc-tagged SIP1 and a GST-XSmad1 C-domain fusion protein. The latter was purified from cell extracts using gluthatione-sepharose beads. Purified proteins were visualized after SDS-PAGE and Western blotting using anti-GST antibody (Pharmacia), (Panel A, slim arrow). Myc-tagged SIP1 protein was co-purified with GST-XSmad1 C-domain fusion protein, as was shown by Western blotting of the same material using anti-myc monoclonal antibody (Santa Cruz)(Panel C, lane one, fat arrow). Deletion of the δ1 aa long SBD in SIP1 abolished this interaction (panel C, lane 2). Note that the amounts of purified GST-XSmad1 C-domain protein and levels of expression of both SIP1 (wild type and SIPIdel SBD) proteins in total cell extracts were comparable (compare lanes 1 and 2 in panel A and B). SEQUENCE LISTING SEQ ID NO 1 1 GCAGCACTCA GCACCAAATG CTAACCCAAG GAGCAGGTAA CCGCAAGTTC AAGTGCACGG 61 AGTGTGGCAA GGCCTTCAAG TACAAGCACC ACCTGAAAGA ACACCTGAGA ATTCACAGTG 121 GTGAAAAACC TTACGAATGC CCAAACTGCA AGAAACGCTT CTCTCATTCT GGGTCCTACA 181 GTTCACATAT CAGCAGCAAG AAATGTATTG GTTTAATATC AGTAAATGGC CGAATGAGAA 241 ACAATATCAA GACGGGTTCT TCCCCTAATT CTGTTTCTTC TTCTCCTACT AACTCAGCCA 301 TTACTCAGTT AAGGAACAAG TTGGAAAATG GAAAACCACT TAGCATGTCT GAGCAGACAG 361 GCTTACTTAA GATTAAAACA GAACCACTAG ACTTCAATGA CTATAAAGTT CTTATGGCAA 421 CACATGGGTT TAGTGGCAGC AGTCCCTTTA TGAACGGTGG GCTTGGAGCC ACCAGCCCTT 481 TAGGTGTACA CCCATCTGCT CAGAGTCCAA TGCAGCACTT AGGTGTAGGG ATGGAAGCCC 5 1 CTTTACTTGG ATTTCCCACT ATGAATAGTA ACTTGAGTGA GGTACAAAAG GTTCTACAGA 601 TTGTGGACAA TACGGTTTCT AGGCAAAAGA TGGACTGCAA GACGGAAGAC ATTTCAAAGT 661 TGAAAGGTTA TCACATGAAG GATCCATGTT CTCAGCCAGA AGAACAAGGG GTAACTTCTC 721 CCAATATTCC CCCTGTCGGT CTTCCAGTAG TGAGTCATAA CGGTGCCACT AAAAGTATTA 781 TTGACTATAC CTTAGAGAAA GTCAATGAAG CCAAAGCTTG CCTCCAGAGC TTGACCACCG 841 ACTCAAGGAG ACAGATCAGT AACATAAAGA AAGAGAAGTT GCGTACTTTG ATAGATTTGG 901 TCACTGATGA TAAAATGATT GAGAACCACA GCATATCCAC TCCATTTTCA TGCCAGTTCT 961 GTAAAGAAAG CTTCCCGGGC CCTATTCCCC TGCATCAGCA TGAACGATAC CTGTGTAAGA 1021 TGAATGAAGA GATCAAGGCA GTCCTGCAAC CTCATGAAAA CATAGTCCCC AACAAAGCTG 1081 GAGTTTTTGT TGATAATAAA GCCCTCCTCT TGTCATCTGT ACTTTCCGAG AAAGGACTGA 11 1 CAAGCCCCAT CAACCCATAC AAGGACCACA TGTCTGTACT GAAAGCATAC TATGCTATGA 1201 ACATGGAGCC CAACTCTGAT GAACTGCTGA AAATCTCCAT TGCTGTGGGC CTTCCTCAGG 1261 AATTTGTGAA GGAATGGTTT GAGCAAAGAA AAGTCTACCA GTATTCGAAT TCCAGGTCAC 1321 CATCACTGGA AAGGACCTCC AAGCCGTTAG CTCCCAACAG TAACCCCACC ACAAAAGACT 1381 CTTTGTTACC CAGGTCTCCT GTAAAACCTA TGGACTCCAT CACATCGCCA TCTATAGCAG 1441 AACTCCACAA CAGTGTTACG AGTTGTGATC CTCCTCTCAG GCTAACAAAA TCTTCCCATT 1501 TCACCAATAT TAAAGCAGTT GATAAACTGG ACCACTCGAG GAGTAATACT CCTTCTCCTT 1561 TAAATCTTTC CTCCACATCT TCTAAAAACT CCCACAGTAG CTCGTACACT CCAAATAGCT 1621 TCTCTTCCGA GGAGCTGCAG GCTGAGCCGT TGGACCTGTC ATTACCAAAA CAAATGAGAG 1681 AACCCAAAGG TATTATAGCC ACAAAGAACA AAACAAAAGC TACTAGCATA AACTTAGACC 1741 ACAACAGTGT TTCTTCATCG TCTGAGAATT CAGATGAGCC TCTGAATTTG ACTTTTATCA 1801 AGAAAGAGTT TTCAAATTCT AATAACCTGG ACAATAAAAG CAACAACCCT GTGTTCGGCA 1861 TGAACCCATT TAGTGCCAAG CCTTTATACA CCCCTCTTCC ACCACAGAGC GCATTTCCCC 1921 CTGCCACTTT CATGCCACCA GTCCAGACCA GCATCCCCGG GCTACGACCA TACCCAGGAC 1981 TGGATCAGAT GAGCTTCCTA CCGCATATGG CCTATACCTA CCCAACGGGA GCAGCTACCT 2041 TTGCTGATAT GCAGCAAAGG AGGAAATACC AGAGGAAACA AGGATTTCAG GGAGACTTGC 2101 TGGATGGAGC ACAAGACTAC ATGTCAGGCC TAGATGACAT GACAGACTCC GATTCCTGTC 2161 TGTCTCGAAA GAAGATAAAG AAGACAGAAA GTGGCATGTA TGCATGTGAC TTATGTGACA 2221 AGACATTCCA GAAAAGCAGT TCCCTTCTGC GACATAAATA CGAACACACA GGAAAGAGAC 2281 CACACCAGTG TCAGATTTGT AAGAAAGCGT TCAAACACAA ACACCACCTT ATCGAGCACT 2341 CGAGGCTGCA CTCGGGCGAG AAGCCCTATC AGTGTGACAA ATGTGGCAAG CGCTTCTCAC 2401 ACTCGGGCTC CTACTCGCAG CACATGAATC ACAGGTACTC CTACTGCAAG CGGGAGGCGG 2461 AGGAGCGGGA AGCAGCCGAG CGCGAGGCGC GAGAGAAAGG GCACTTGGGA CCCACCGAGC 2521 TGCTGATGAA CCGGGCTTAC CTGCAGAGCA TCACCCCTCA GGGGTACTCT GACTCGGAGG 2581 AGAGGGAGAG CATGCCGAGG GATGGCGAGA GCGAGAAGGA GCACGAGAAG GAGGGCGAGG 2641 AGGGTTATGG GAAGCTGCGG AGAAGGGACG GCGACGAGGA GGAAGAGGAG GAAGAGGAAG 2701 AAAGTGAAAA TAAAAGTATG GATACGGATC CCGAAACGAT ACGGGATGAG GAAGAGACTG 2761 GGGATCACTC GATGGACGAC AGTTCAGAGG ATGGGAAAAT GGAAACCAAA TCAGACCACG 2821 AGGAAGACAA TATGGAAGAT GGCATGGGAT AAACTACTGC ATTTTAAGCT TCCTATTTTT 2881 TTTTTCCAGT AGTATTGTTA CCTGCTTGAA AACACTGCTG TGTTAAGCTG TTCATGCACG 2941 TGCCTGACGC TTCCAGGAAG CTGTAGAGAG GGACAAAAAG GGGCACTTCA GCCAAGTCTG 3001 AGTTAG SEQ ID NO 2 1 MetLeuThrGlnGly AlaGlyAsnArgLys PheLysCysThrGlu 16 CysGlyLysAlaPhe LysTyrLysHisHis LeuLysGluHisLeu 31 ArglleHisSerGly GluLysProTyrGlu CysProAsnCysLys 46 LysArgPheSerHis SerGlySerTyrSer SerHisIleSerSer 61 LysLysCysIleGly LeuIleSerValAsn GlyArgMetArgAsn 76 AsnlleLysThrGly SerSerProAsnSer ValSerSerSerPro 91 ThrAsnSerAlalle ThrGlnLeuArgAsn LysLeuGluAsnGly 106 LysProLeuSerMet SerGluGlnThrGly LeuLeuLysIleLys 121 ThrGluProLeuAsp PheAsnAspTyrLys ValLeuMetAlaThr 136 HisGlyPheSerGly SerSerProPheMet AsnGlyGlyLeuGly 151 AlaThrSerProLeu GlyValHisProSer AlaGlnSerProMet 166 GlnHisLeuGlyVal GlyMetGluAlaPro LeuLeuGlyPhePro 181 ThrMetAsnSer sn LeuSerGluValGln LysValLeuGlnlle 196 ValAspAsnThrVal SerArgGlnLysMet AspCysLysThrGlu 211 AspIleSerLysLeu LysGlyTyrHisMet LysAspProCysSer 226 GlnProGluGluGln GlyValThrSerPro AsnlleProProVal 241 GlyLeuProValVal SerHisAsnGlyAla ThrLysSerllelle 256 AspTyrThrLeuGlu LysValAsnGluAla LysAlaCysLeuGln 271 SerLeuThrThrAsp SerArgArgGlnlle SerAsnlleLysLys 286 GluLysLeuArgThr LeuIleAspLeuVal ThrAspAspLysMet 301 IleGluAsnHisSer IleSerThrProPhe SerCysGlnPheCys ιυ 316 LysGluSerPhePro GlyProIleProLeu HisGlnHisGluArg 331 TyrLeuCysLysMet AsnGluGluIleLys AlaValLeuGlnPro 346 HisGluAsnlleVal ProAsnLysAlaGly ValPheValAspAsn 361 LysAlaLeuLeuLeu SerSerValLeuSer GluLysGlyLeuThr 376 SerProIleAsnPro TyrLysAspHisMet SerValLeuLysAla 391 TyrTyrAlaMetAsn MetGluProAsnSer AspGluLeuLeuLys 406 IleSerlleAlaVal GlyLeuProGlnGlu PheValLysGluTrp 421 PheGluGlnArgLys ValTyrGlnTyrSer AsnSerArgSerPro 436 SerLeuGluArgThr SerLysProLeuAla ProAsnSerAsnPro 451 ThrThrLysAspSer LeuLeuProArgSer ProValLysProMet 466 AspSerlleT rSer ProSerlleAlaGlu LeuHisAsnSerVal 481 ThrSerCysAspPro ProLeuArgLeuThr LysSerSerHisPhe 496 ThrAsnlleLysAla ValAspLysLeuAsp HisSerArgSerAsn 511 ThrProSerProLeu AsnLeuSerSerThr SerSerLysAsnSer 526 HisSerSerSerTyr ThrProAsnSerPhe SerSerGluGluLeu 541 GlnAlaGluProLeu AspLeuSerLeuPro LysGlnMetArgGlu 556 ProLysGlyllelle AlaThrLysAsnLys ThrLysAlaThrSer 571 IleAsnLeuAspHis AsnSerValSerSer SerSerGluAsnSer 586 AspGluProLeuAsn LeuThrPhelleLys LysGluPheSerAsn 601 SerAsnAsnLeuAsp AsnLysSerAsnAsn ProValPheGlyMet 616 AsnProPheSerAla LysProLeuTyrThr ProLeuProProGln 631 SerAlaPheProPro AlaThrPheMetPro ProValGlnThrSer 646 IleProGlyLeuArg ProTyrProGlyLeu AspGlnMetSerPhe 661 LeuProHisMetAla TyrThrTyrProThr GlyAlaAlaThrPhe 676 AlaAspMetGlnGln ArgArgLysTyrGln ArgLysGlnGlyPhe 691 GlnGlyAspLeuLeu AspGlyAlaGlnAsp TyrMetSerGlyLeu 706 AspAspMetThrAsp SerAspSerCysLeu SerArgLysLysIle 721 LysLysThrGluSer GlyMetTyrAlaCys AspLeuCysAspLys 736 ThrPheGlnLysSer SerSerLeuLeuArg HisLysTyrGluHis 751 ThrGlyLysArgPro HisGlnCysGlnlle CysLysLysAlaPhe 766 LysHisLysHisHis LeuIleGluHisSer ArgLeuHisSerGly 781 GluLysProTyrGln CysAspLysCysGly LysArgPheSerHis 796 SerGlySerTyrSer GlnHisMetAsnHis ArgTyrSerTyrCys 811 LysArgGluAlaGlu GluArgGluAlaAla GluArgGluAlaArg 826 GluLysGlyHisLeu GlyProThrGluLeu LeuMetAsnArgAla 841 TyrLeuGlnSerlle ThrProGlnGlyTyr SerAspSerGluGlu 856 ArgGluSerMetPro ArgAspGlyGluSer GluLysGluHisGlu 871 LysGluGlyGluGlu GlyTyrGlyLysLeu ArgArgArgAspGly 886 AspGluGluGluGlu GluGluGluGluGlu SerGluAsnLysSer 901 MetAspThrAspPro GluThrlleArgAsp GluGluGluThrGly 916 AspHisSerMetAsp AspSerSerGluAsp GlyLysMetGluThr 931 LysSerAspHisGlu GluAspAsnMetGlu AspGlyMetGly SEQ ID NO 3 1 CTGGCTAGGC GTCGCGGACT CCGGAGATGG AGGAAAAGGA GCAGCTGCGG CGGCAGATAC 61 GCCTCCTGCA GGGTCTAATT GATGACTATA AAACACTCCA CGGCAATGGC CCTGCCCTGG 121 GCAACTCATC AGCTACTCGG TGGCAGCCAC CCGTGTTCCC GGGTGGCAGG ACCTTTGGCG 181 CCCGCTACTC CCGTCCAAGT CGGAGGGGCT TCTCCTCACA CCATGGCCCT TCGTGGCGCA 241 AGAAATACTC CCTTGTGAAT CAGCCTGTGG AATCTTCTGA CCCAGCCAGC GATCCTGCTT 301 TTCAGACATC CCTCAGGTCT GAGGATAGCC AGCATCCTGA ACCCCAGCAG TATGTACTGG 361 AGAGACAGGT CCAGCTCAGT CCAGATCAGA ATATGGTTAT TAAGATCAAG CCACCATCAA 421 AGTCAGGTGC CATCAATGCT TCAGGGGTCC AGCGGGGGTC CTTGGAAGGC TGTGATGACC 481 CCTCTTGGAG TGGCCAAAGA CCCCAAGGAA GTGAGGTTGA GGTCCCTGGT GGACAACTGC 541 AGCCTGCAAG GCCAGGAAGA ACCAAGGTGG GTTACAGTGT GGACGACCCC CTCTTGGTCT 601 GCCAGAAGGA GCCTGGCAAG CCTCGGGTAG TGAAGTCTGT GGGCAGGGTG AGTGACAGCT 661 CTCCCGAGCA TCGGCGGACA GTCAGTGAAA ATGAAGTGGC CCTCAGGGTA CACTTCCCAT 721 CTGTCCTGCC CCATCACACT GCTGTGGCTC TGGGCAGGAA GGTAGGCCCT CATTCTACCA 781 GCTATTCTGA ACAGTTCATT GGAGACCAAA GAGCAAACAC TGGCCACTCA GACCAGCCAG 841 CTTCCTTGGG GCCAGTGGTG GCTTCAGTCA GACCAGCAAC AGCCAGGCAG GTCAGGGAGG 901 CCTCACTGCT CGTGTCCTGT CGAACCAGCA AGTTTCGGAA AAACAACTAC AAATGGGTAG 961 CTGCCTCAGA AAAGAGCCCA CGGGTCGCTC GGAGAGCCCT CAGTCCCAGA ACAACTCTGG 1021 AGAGCGGGAA CAAGGCCACT TTGGGTACAG TTGGAAAGAC AGAGAAGCCA CAGCCTAAAG 1081 TTGACCCAGA GGTGAGGCCG GAGAAACTGG CCACACCATC CAAGCCTGGC CTCTCTCCCA 1141 GCAAGTACAA GTGGAAGGCT TCCAGCCCGT CTGCTTCCTC CTCTTCCTCT TTCCGTTGGC 1201 AGTCTGAGGC TGGCAGCAAG GACCATACTT CTCAGCTCTC CCCAGTCCCA TCTAGGCCCA 1261 CATCAGGGGA CAGACCAGCA GGGGGACCCA GCAGCTTGAA GCCCCTCTTT GGAGAGTCAC 1321 AGCTCTCAGC TTACAAAGTG AAGAGCCGGA CCAAGATTAT CCGGAGGCGG GGCAATACCA 1381 GCATTCCTGG GGACAAGAAG AACAGCCCTA CAACTGCCAC CACCAGCAAA AACCATCTTA 1441 CCCAGCGACG GAGACAGGCC CTCCGGGGGA AGAATAGCCC GGTTCTAAGG AAGACTCCCC 1501 ACAAGGGTCT GATGCAGGTC AACAGGCACC GGCTCTGCTG CCTGCCGTCC AGCCGGACCC 1561 ACCTCTCCAC CAAGGAAGCT TCCAGTGTGC ACATGGGGAT TCCACCCTCC AATAAGGTGA 1621 TCAAGACCCG CTACCGCATT GTTAAGAAGA CCCCAAGCTC TTCCTTTGGT GCTCCATCCT 1681 TCCCCTCATC TCTACCCTCC TGGCGGGCCC GGCGCATCCC ATTATCCAGG TCCCTAGTGC 1741 TAAACCGCCT TCGTCCAGCA ATCACTGGGG GAGGGAAAGC CCCACCTGGT ACCCCTCGAT 1801 GGCGCAACAA AGGCTACCGC TGCATTGGAG GGGTTCTGTA CAAGGTGTCT GCCAACAAGC 1861 TCTCCAAAAC TTCTAGCAGG CCCAGTGATG GCAACAGGAC CCTCCTCCGC ACAGGACGCC 1921 TGGACCCTGC TACCACCTGC AGTCGTTCCT TGGCCAGCCG GGCCATCCAG CGGAGCCTGG 1981 CTATCATCCG GCAGGCGAAG CAGAAGAAAG AGAAGAAGAG AGAGTACTGC ATGTACTACA 2041 ACCGCTTTGG CAGGTGTAAC CGTGGCGAAT GCTGCCCCTA CATCCATGAC CCTGAGAAGG 2101 TGGCCGTGTG CACCAGATTT GTCCGAGGCA CATGCAAGAA GACAGATGGG TCCTGCCCTT 2161 TCTCTCACCA TGTGTCCAAG GAAAAGATGC CTGTGTGCTC CTACTTTCTG AAGGGGATCT 2221 GCAGCAACAG CAACTGCCCC TACAGCCATG TGTACGTGTC CCGCAAGGCT GAAGTCTGCA 2281 GTGACTTCCT CAAAGGCTAC TGCCCATTGG GTGCAAAGTG CAAGAAGAAG CACACGCTGC 2341 TGTGTCCTGA CTTTGCCCGC AGGGGTATTT GTCCCCGTGG CTCCCAGTGC CAGCTGCTCC 2401 ATCGTAACCA GAAGCGACAT GGCCGGCGGA CAGCTGCACC TCCTATCCCT GGGCCCAGTG S 2461 ATGGAGCCCC CAGAAGCAAG GCCTCAGCTG GCCACGTACT CAGGAAGCCT ACTACTACTC 2521 AGCGCTCTGT CAGACAGATG TCCAGTGGTC TGGCTTCCGG AGCTGAGGCC CCAGCCTCCC 2581 CACCTCCCTC CCCAAGGGTA TTAGCCTCCA CCTCTACCCT GTCTTCAAAG GCCACCGCTG 2641 CCTCCTCTCC TTCCCCCTCT CCCTCTACTA GCTCCCCAGC CCCTTCCTTG GAGCAGGAAG 2701 AAGCTGTCTC TGGGACAGGC TCAGGAACAG GCTCCAGTGG CCTCTGCAAG CTGCCATCCT 2761 TCATCTCCCT GCACTCCTCC CCAAGCCCAG GAGGACAGAC TGAGACTGGG CCCCAGGCCC 2821 CCAGGAGCCC TCGCACCAAG GACTCAGGGA AGCCGCTACA CATCAAACCA CGCCTGTGAG 2881 GCCCCCTGAG GACCAGCCCG CACCTACCTC AGACCCTCAC CCCTGGAGAG GATGAAGGCT 2941 CTACCCACAA CTGCTCCTG SEQ ID NO 4 1 etGluGluLysGlu GlnLeuArgArgGln IleArgLeuLeuGln 16 GlyLeuIleAspAsp TyrLysThrLeuHis GlyAsnGlyProAla 31 LeuGlyAsnSerSer AlaThrArgTrpGln ProProValPhePro 46 GlyGlyArgThrPhe GlyAlaArgTyrSer ArgProSerArgArg 61 GlyPheSerSerHis HisGlyProSerTrp ArgLysLysTyrSer 76 LeuValAsnGlnPro ValGluSerSerAsp ProAlaSerAspPro 91 AlaPheGlnThrSer LeuArgSerGluAsp SerGlnHisProGlu 106 ProGlnGlnTyrVal LeuGluArgGlnVal GlnLeuSerProAsp 121 GlnAsnMetVallle LysIleLysProPro SerLysSerGlyAla 136 IleAsnAlaSerGly ValGlnArgGlySer LeuGluGlyCysAsp 151 AspProSerTrpSer GlyGlnArgProGln GlySerGluValGlu 166 ValProGlyGlyGln LeuGlnProAlaArg ProGlyArgThrLys 181 ValGlyTyrSerVal AspAspProLeuLeu ValCysGlnLysGlu 196 ProGlyLysProArg ValValLysSerVal GlyArgValSerAsp 211 SerSerProGluHis ArgArgThrValSer GluAsnGluValAla 226 LeuArgValHisPhe ProSerValLeuPro HisHisThrAlaVal 241 AlaLeuGlyArgLys ValGlyProHisSer ThrSerTyrSerGlu 256 GlnPhelleGlyAsp GlnArgAlaAsnThr GlyHisSerAspGln 271 ProAlaSerLeuGly ProValValAlaSer ValArgProAlaThr 286 AlaArgGlnValArg GluAlaSerLeuLeu ValSerCysArgThr 301 SerLysPheArgLys AsnAsnTyrLysTrp ValAlaAlaSerGlu 316 LysSerProArgVal AlaArgArgAlaLeu SerProArgThrThr 331 LeuGluSerGlyAsn LysAlaThrLeuGly ThrValGlyLysThr 346 GluLysProGlnPro LysValAspProGlu ValArgProGluLys 361 LeuAlaThrProSer LysProGlyLeuSer ProSerLysTyrLys 376 TrpLysAlaSerSer ProSerAlaSerSer SerSerSerPheArg 391 TrpGlnSerGluAla GlySerLysAspHis ThrSerGlnLeuSer 406 ProValProSerArg ProThrSerGlyAsp ArgProAlaGlyGly 421 ProSerSerLeuLys ProLeuPheGlyGlu SerGlnLeuSerAla 436 TyrLysValLysSer ArgThrLysIlelle ArgArgArgGlyAsn 451 ThrSerlleProGly AspLysLysAsnSer ProThrThrAlaThr 466 ThrSerLysAsnHis LeuThrGlnArgArg ArgGlnAlaLeuArg 481 GlyLysAsnSerPro ValLeuArgLysThr ProHisLysGlyLeu 496 MetGlnValAsnArg HisArgLeuCysCys LeuProSerSerArg 511 ThrHisLeuSerThr LysGluAlaSerSer ValHisMetGlylle 526 ProProSerAsnLys VallleLysThrArg TyrArglleValLys 541 LysThrProSerSer SerPheGlyAlaPro SerPheProSerSer 556 LeuProSerTrpArg AlaArgArgllePro LeuSerArgSerLeu 571 ValLeuAsnArgLeu ArgProAlalleThr GlyGlyGlyLysAla 586 ProProGlyThrPro ArgTrpArgAsnLys GlyTyrArgCysIle 601 GlyGlyValLeuTyr LysValSerAlaAsn LysLeuSerLysThr 616 SerSerArgProSer AspGlyAsnArgThr LeuLeuArgThrGly 631 ArgLeuAspProAla ThrThrCysSerArg SerLeuAlaSerArg 646 AlalleGlnArgSer LeuAlallelleArg GlnAlaLysGlnLys 661 LysGluLysLysArg GluTyrCysMetTyr TyrAsnArgPheGly 676 ArgCysAsnArgGly GluCysCysProTyr IleHisAspProGlu 691 LysValAlaValCys ThrArgPheValArg GlyThrCysLysLys 706 ThrAspGlySerCys ProPheSerHisHis ValSerLysGluLys 721 MetProValCysSer TyrPheLeuLysGly IleCysSerAsnSer 736 AsnCysProTyrSer HisValTyrValSer ArgLysAlaGluVal 751 CysSerAspPheLeu LysGlyTyrCysPro LeuGlyAlaLysCys 766 LysLysLysHisThr LeuLeuCysProAsp PheAlaArgArgGly 781 IleCysProArgGly SerGlnCysGlnLeu LeuHisArgAsnGln 796 LysArgHisGlyArg ArgThrAlaAlaPro ProIleProGlyPro 811 SerAspGlyAlaPro ArgSerLysAlaSer AlaGlyHisValLeu 826 ArgLysProThrThr ThrGlnArgSerVal ArgGlnMetSerSer 841 GlyLeuAlaSerGly AlaGluAlaProAla SerProProProSer 856 ProArgValLeuAla SerThrSerThrLeu SerSerLysAlaThr 871 AlaAlaSerSerPro SerProSerProSer ThrSerSerProAla 886 ProSerLeuGluGln GluGluAlaValSer GlyThrGlySerGly 901 ThrGlySerSerGly LeuCysLysLeuPro SerPhelleSerLeu 916 HisSerSerProSer ProGlyGlyGlnThr GluThrGlyProGln 931 AlaProArgSerPro ArgThrLysAspSer GlyLysProLeuHis 946 IleLysProArgLeu SEQ ID NO 5 1 GAGGCTTCGA AAGGTGCTGA AGCAGATGGG AAGGCTGCGC TGCCCCCAAG AGGGCTGTGG 61 GGCTGCCTTC TCCAGCCTCA TGGGTTATCA ATACCACCAG CGGCGCTGTG GGAAGCCACC 121 CTGTGAGGTA GACAGTCCCT CCTTCCCCTG TACCCACTGT GGCAAGACTT ACCGATCCAA 181 GGCTGGCCAC GACTATCATG TGCGTTCAGA GCACACAGCC CCGCCTCCTG AGGATCCCAC 241 AGACAAGATC CCTGAGGCTG AGGACCTGCT TGGGGTAGAA CGGACCCCAA GTGGTCGCAT 301 CCGACGTACG TGCCCAGGTT GCCGTGTTCC ATCTACAGGA GATTGCAGAG ATGAACTGGC 361 CCGTGACTGG ACCAAACAAC GCATGAAGGA TGACTTGTGC CTGAGAATGC ACGACTCAAC 421 TACACTCGGC CAGGTCTCCC CACACTTAAC CCTCAGCTGC TGGAAGCATG GAAGAATGAA 481 GTCAAGGAGA AGGGCCATGT GAACTGTCCC AATGAATTGC TGTGAAGCCA TCTACGCCAG 541 TGTGTCCGGC CTCAAGGCCC ATCTTGCCAG CTGCAGCAAG GGGGACCACC TGGGTGGGGA 601 AAGTACCGCT GCCTGCTGTG TCCCAAAGAA GTTCAGCTCT GAAAAGCGGC GTGAAGTTAC 661 CACATCCTTA AAGACCCAAC GGGAGAGAAT TGGTTCCGGA CCTCAGCTGA CCCGTCTTCC 721 AACACAAGAG CCAGGACTCC TTGATGCCTA GGAAAGAGAA AGAAATTTGT CAGGGAGAAA 781 GAAGCGGGGC CGCAAACCCA AGGAACGATC CTCCGAGGAG CCAGCATCTG CTCCCCCCTA 841 ACAGGGAATG ACTGGCCCCC AGGAGGCAGA GANAGGGGGT CCCGGAGCTC CACTGGGAAG 901 AAGGCTGGAG CTGGGAAGGC ACCTGAAAAG TGAGCCTAGT GGGCAGGGCC TACCCATCAT 961 GCCCTGCATT GTCCAGATTA GGGGAGCCAG TTCTAGACTG GTCCTCCACC TCCAACACAC 1021 ACCCCCATCT GTCCAGAGGG TTGGCAAACT ACTCTGCTCT CCCTGAAAGT GGTCCTTCCC 1081 CTGTTTAGGC TGCCTCAACA AGGCTAGATG GGGCTCCCCG GGAGTGCCAG GGCAGCAGCA 1141 AAAGTGCAAT AGGCTGGAGG ACCCAGCCGT TCCTACAAGG ACATTGCATG GCAGGAGCCT 1201 TGGCATCATG GGGCATGAAG TGTGCTTAAA CAGTTAAAAG GTCCCAGTTT CCACCTTCCT 1261 CTGGCCCAGT AGGATCCCCA ATCTGACTCT TTCAAGGCTC AGACATTCCT GGTGACCCAA 1321 TGTTGTGGAC TGATGAGGCA CCTGAGCAGT CTGGCTGCCA TAACTTGGGC CTCGCCTCCA 1381 CCCAACACTG GAACTCCAGT ACTCCCGGA SEQ ID NO 6 1 GGATTTACTG CTCAGCCAGC TACTTACCAT CATAACAGCA CTACCACCTG GACTGGAAGT 61 AGGACTGCAC CATACACACC TAATTTGCCT CACCACCAAA ACGGCCATCT TCAGCACCAC 121 CCGCCTATGC CGCCCCATCC TGGACATTAC TGGCCAGTTC ACAATGAGCT TGCATTCCAG 181 CCTCCCATTT CCAATCATCC TGCTCCTGAG TACTGGTGCT CCATTGCTTA CTTTGAAATG 241 GACGTTCAGG TAGGAGAGAC GTTTAAGGTC CCTTCAAGTT GCCCTGTTGT GACTGTGGAT 301 GGCTATGTGG ATCCTTCGGG AGGAGATCGC TTTTGCTTGG GTCAACTCTC CAATGTCCAC 361 AGGACAGAAG CGATTGAGAG AGCGAGGTTG CACATAGGCA AAGGAGTGCA GTTGGAATGT 421 AAAGGTGAAG GTGACGTTTG GGTCAGGTGC CTTAGTGACC ACGCGGTCTT TGTACAGAGT 481 TACTACCTGG ACAGAGAAGC TGGCCGAGCA CCTGGCGACG CTGTTCATAA GATCTACCCA 541 AGCGCGTATA TAAAGGTCTT TGATCTGCGG CAGTGTCACC GGCAGATGCA GCAACAGGCG 601 GCCACTGCGC AAGCTGCAGC TGCTGCTCAG GCGGCGGCCG TGGCAGGGAA CATCCCTGGC 661 CCTGGGTCCG TGGGTGGAAT AGCCCCAGCC ATCAGTCTGT CTGCTGCTGC TGGCATCGGT 721 GTGGATGACC TCCGGCGATT GTGCATTCTC AGGATGAGCT TTGTGAAGGG CTGGGGCCCA 781 GACTACCCCA GGCAGAGCAT CAAGGAAACC CCGTGCTGGA TTGAGATTCA CCTTCACCGA 8 1 GCTCTGCAGC TCTTGGATGA AGTCCTGCAC ACCATGCCCA TTGCGGACCC ACAGCCTTTA 901 GACTGAGATC TCACACCACG GACGCCCTAA CCATTTCCAG GATGGTGGAC TAATGAAATA SEQ ID NO 7 1 ττττττττττ TCCACTTCGT ATAGTGACTC AGTTTTATTT ACGCTAGTAA CTAGGTAGAA 61 AGTATACATG TGTGTCTGTG GTACAGTCAA TGTGTCTTAA CTCCTCCACT TCAATCTCTA 121 CAAAGTCACC GCCAAGTGAT CAAGGATGGC AAACACAGGG CTTATAACCA AAAGGTATAA 181 AAAAGTCTGC AGTCTTGCCC TAAGATACAA AAACTGAATT TTAAACAATG TCAAAACATA 241 CATGATTTTA ACAAGTATAT GNAAAAGAAT CACACATCAA ATCAAGTACA AAAATATCCA 301 AACCACCTGT TACAACTGCA CTGTTTCCAT TATCCTGCAC AGTATTTAAC ATAAAAATTT 361 AGCAGTTTCC AAAAATATTC ATTAATTCAC TTGAAGTTAC TGCCCCNTGC AAAACAGTGA 421 AACACCAGGC AAACCAANCT GCCTTTAATT NTTTTNNACC AAATCNTCCT CCCNAN 3 SEQ ID NO 8 1 GACAGAACCG GTTCGCACCG ACAGACGGAC AGAGGACCAG ACAGCCACTA AGGAGCGCTT 61 ACTGCCCCCC TCCGGGCCCC TGCCCCGAAC TCCAGCCCCA GCGCCTGTTA CTGCCCCAGA 121 TACAGCAAGA TGCGCGGTCC TGGCAGCGAG ACACGGGCGA GCACTGTCCC CCGGTCCCCG 181 AGCCCTGGCC CCTAGCGCCC AGCGCTGCTG CCCTGCATCA GGGAGGGCCG CGGAGACCCC 241 AGCCTCAGTT GGCGCAGGAG CCCTGCGGGT GGGGCCTGCC CAGCCCAGCC AGGCGCGCCA 301 GCCCACCATG CTCCTCCTGT CGCCGCGCAG CGCGCTGGTC TCCGTCTATT GCCCGCAGAT 361 CTTTCTCCTT CTGTCCACGG CAGTTACTAC ATTGTCATCC GTGGTGGCCC TGGGAGCCAA 421 CATCATCTGC AACAAGATTC CTGGCCTGGC CCCACGGCAG CGTGCCATCT GCCAGAGCCG 481 ACCCGATGCC ATCATTGTGA TCGGGGAGGG GGCGCAGATG GGCATCGACG AGTGCCAGCA 541 CCAGTTCCGA TTCGGCCGCT GGAACTGCTC CGCCCTGGGC GAGAAGACCG TCTTCGGGCA 601 AGAACTCCGA GTAGGGAGTC GAGAGGCTGC CTTCACCTAT GCCATCACGG CGGCGGGCGT 661 GGCGCATGCT GTCACCGCTG CCTGCAGCCA GGGCAATCTG AGCAATTGTG GCTGTGACCG 721 GGAGAAGCAA GGCTACTACA ACCAGGCGGA AGGCTGGAAG TGGGGGGGCT GCTCAGCGGA 781 CGTCCGCTAC GGCATCGACT TTTCTCGTCG CTTTGTGGAT GCCCGTGAGA TCAAAAAGAA 841 CGCCGGATCC SEQ ID NO 9 1 AGACACTGTT GTATTCAGAT TATTTCTTAG TGGCTGGCTT TTGATTCTAG ACAGAGATTC 61 TTAAAGTCCT TTTAAAAAAG TGGATCAGGA ATCCTGTTAT GGGCCTTGAT TGTTCCAGAC 121 ATTAGAAGTA AATATATTTG ATGAAGGAAA TCTTGAAAAA ATACTGACTA GATAAAAATT 181 GTAAGCCAAG CTTTCTGACT GAAAAATGCT ACCTAGCCAC AGATCATTGC TGTTATTTGG 241 TTCATTGCAT GAGTGTGTAT GTGTGTGTAT ATATGTATAC ACATATATAT GTGTGTGTGT 301 GTGTATGTGT ACACACACAT ATATGTGGGT TTTGGGGGGT ATGGATAAGA TGGTGCTATG 361 AAAATAATTT GTCTCTTGTT TTAATTAATG AAGCTTCTGT CATGCCAAGT AATCTTTAAG 421 GGAGAATCAG AACTTTTCAT TAAAANTCAT AAGGGAAACA GAATTTGTAC GGGTG SEQ ID NO 10 1 AGCGGAGTTT CAGTCTGCGG ACACGCGTGG AGCCCTTGCC CGGGCCTCCG TGGGTCTGAG 61 GCGCTGCGAG CCCTGGGTAA CCACGGCCTC GAGCTGCTGT CCTCACCAAG ATCCTCCAAT 121 TCTGAACCAA GAACAAAAAA ATGTTTCAGC TTCGTGCATT TCAAAGAAGG CATTAACTAG 181 AGCCCAGTTT GGCGGACAAG TTCTTCATTC AAAAGAGAGT CCTGTTAGGA TCACTGTGTC 241 CAAAAAGAAC ACATTTGTTT TGGGAGGCAT TGATTGTACT TATGAAAAGT TTGAAAATAC 301 TGATGTTAAC ACCATTAGTT CTCTTTGTGT TCCTATTAAG AATCATAGCC AATCTATTAC 361 TTCTGATAAT GATGTGACAA CAGAAAGGAC TGCAAAAGAG GATATTACAG AACCAAATGA 421 AGAGATGATG TCCAGAAGAA CTATTCTTCA AGATCCCATA AAGAATACAT CTAAAATTAA 481 ACGTTCAAGT CCAAGACCTA ATTTAACACT ATCTGGCCGG TCTCAAAGAA AATGTACAAA 541 GCTTGAAACT GTTGTAAAAG AAGTAAAAAA ATATCAGGCA GTCCACCTAC AGGAATGGAT 601 GATTAAAGTC ATCAATAATA ATACTGCTAT ATGTGTAGAA GGAAAGCTGG TAGATATGAC 661 TGATGTTTAT TGGCATAGCA ATGTAATTAT AGAGCGGATT AAACACAATG AACTTAGGAC 721 CTTATCAGGC AACATTTATA TCTTAAAAGG ATTGATAGAC TCGGTCTCCA TGAAAGAAGC 781 AGGATATCCC TGTTATCTCA CAAGAAAATT TATGTTTGGA TTTCCCCACA ACTGGAAGGA 841 ACACATTGAT AAATTTCTAG AACAATTAAG GGCTGAAAAA AAGAACAAGA CCAGACAGGA 901 AACAGCAAGA GTCCAAGAAA AACAAAAATC AAAAAAAAAA GATGCAGAAG ATAAAGAAAC 961 TTATGTCCTC CAAAAGGCCA GCATCACGTA TGACCTTAAT GATAATAGCT TAGAGAGAAC 1021 TGAAGTACCC ACTGATCCCT TGAACTCACT GGAACAGCCT ACCTCCGGCA AAGAAAGAAG 1081 ACACCCGCTT CTCAGTCAGA AGAGAGCTTA TGTTTTAATA ACACCACTTA GAAACAAAAA 1141 GTTGATAGAG CAAAGATGTA TAGACTACAG TCTCTCTATT GAAGGAATAT CGGACTTTTT 1201 CAAAGCAAAG CATCAAGAAG AAAGTGACTC AGATATACAT GGAACTCCAA GTTCTACCAG 1261 TAAGTCTCAA GAGACCTTTG AACATAGAGT GGGATTTGAA GGCAATACCA AGGAGGACTG 1321 CAATGAATGT GACATAATCA CTGCCAGACA TATTCAGATA CCTTGCCCGA AAAGTAAACA 1381 AATGCTCACC AATGATTTTA TGAAAAAGAA CAAGTTGCCC TCAAAACTGC AGAAAACTGA 1441 AAATCAAATA GGTGTATCAC AGTATTGCCG GTCCTCATCA CATTTGTCAA GTGAAGAGAA 1501 TGAAGTAGAA ATTAAAAGTA GAACCAGAGG ATCCCAA SEQ ID NO 11 1 GAGTAAACTC TCCTTCCGAG CGCGGGCGCT GGACGCCGCC AAACCGCTGC CCATCTACCG 61 CGGCAAGGAC ATGCCTGATC TCAACGACTG CGTCTCCATC AACCGGGCCG TGCCCCAGAT 121 GCCCACCGGG ATGGAGAAGG AGGAGGAATC GGAACATCAC CTACAGCGAG CTATTTCAGC 181 GCAGCAAGTA TTTAGAGAAA AAAAAGAGAG CATGGTCATT CCAGTTCCTG AGGCAGAGAG 241 CAACGTCAAC TATTACAATC NGCTTGTACA AAGGGGAGTT CAAACAGCCC AAGCAGTTCA 301 TNCATATTCA GCCTTTTAAC CTAGACAACG AGCAACCAGA TTATGATATG GATTCAGAAG 361 ATGAGACATT ATTAAATAGA CTTAACAGAA AAATGGAAAT TAAACCTTTG CAATTTGAAA 421 TTATGATTGA CAGACTTGAA AAAGCCANTT CTACCAGCTT GTACACTTCA AGAAGCA SEQ ID NO 12 1 TCTGGTTCTA CTTTTAATTT CTACTTCATT CTCTTCACTT GACAAATGTG ATGAGGACCG 61 GCAATACTGT GATACACCTA TTTGATTTTC AGTTTTCTGC AGTTTTGAGG GCAACTTGTT 121 CTTTTTCATA AAATCATTGG TGAGCATTTG TTTACTTTTC GGGCAAGGTA TCTGAATATG 181 TCTGGCAGTG ATTATGTCAC ATTCATTGCA GTCCTCCTTG GTATTGCCTT CAAATCCCAC 241 TCTATGTTCA AAGGTCTCTT GAGACTTACT GGTAGAACTT GGAGTTCCAT GTATATCTGA 301 GTCACTTTCT TCTTGATGCT TTGCTTTGAA AAATCCGATA TTCCTTCAAT AGAGAGACTG 361 TAGTCTATAC ATCTTTGCTC TATCAACTTT TTGTTTCTAA GTGGTGTTAT TAAAACATAA 421 GCTCTCTTCT GACTGAGAAG CGGGTGTCTT CTTTCTTTGC CGGAGGTAGC TGTTCCAGTG 481 ATTCAAGGGA TCAATGGGTA CTCANTCTCT CTAANCTATA TCATAAGGTC TACTTAATGC 541 TGGCTTTTGG AAGANTAATT CTTTATCTCT GN SEQ ID NO 13 1 CTGCTGTGAG GAATGCTGGG ATTGTTGTTT CTGATGAAGC TGCGCAAGTT GCTGCCTTTG 61 CATTTGAACT AGCTGCTGTT GATGTGTCTG AAACTGCTCT TCTGTGATGC CCCCTGTTAC 121 TGATATGCCG TTCTTGCTGG TGTTCAATAA AGCTACGGAT GCTGCAGAAA CTCTTTTACT 33 181 GCTCACAGTC TGCCCTGGTT TTCTTGAGGT ACATTCTTCA CTATCAATGT CCTGTACATT 241 TAGTAGCCTT GGCTGGAAAC ACTGTAGTCG ACATGATCTG ATATTGCTTA ATATTTCAGA 301 AAGAGACAGT CTATNTTCAC AAGGTTTACT GGGAAGCATT GGTCCGAGAG AAATTAGAAG 361 AAAATCTATA GTTTGGGAAG ACTTGAAAAC CCGTTCAGCA TCTCANGGTC TATCTGTTTC 421 AGGACGGGGT CATGTTCTGT GGATATCCGT CCATTATGAA CCTGCCACTC TGCCATTCCC 481 CTCCTTGCAA TCCTATACAT CTTCTTGGAC TGTAATTTCG TAAGANATGC TTATACTCAA 541 CTTATCCAAT CTGCCACTCT GAATTTCNAC ATATGGTAN SEQ ID NO 14 1 GGAAAGACAA AGATGCAGGA TATAGTACTT GGAACAGGCT TTTTAAGTAT TCATCCTAAA 61 AATGAGGCTG AGCACATAGA AAATGGGGCT AAGTGTCCGA ATTTGGAGTC CATAAATAAG 121 GTAAATGGTC TTTGTGAGGA CACTGCACCG TCTCCTGGTA GGGTTGAACC ACAGAAGGCC 181 AGTTCTTCTG CTGACGTGGG CATTTCTAAA AGCACGGAAG ATCTATCTCC TCAGAGAAGT 241 GGTCCAACTG GAGCTGTTGT GAAATCTCAT AGTATAACTA ACATGGAGAC TGGAGGCTTA 301 AAAATCTATG ACATTCTTGG TGATGATGGC CCTCAGCCGC CAAGTTGCAG CAGTTAAAAT 361 CGCATCTGCT GTGGATGGGG AAGAACATAT CAGAAGCAAN TCT SEQ ID NO 15 1 ττττττττττ ττττττττττ GACAGTTTTG AAATTATATT TATTAATGCT TTATTATACG 61 TATTGTATTC TATTTGAGCC AAGGGAAAGG AGAACCCCAC TCAAGTGAGA TAACAAACTT 121 GCTGTCTTTT ACAAAATTTA ATCAGAACTG ACAATGTTAT GGTTAGTTCT TAATTCCTGA 181 GAATTTGAAC ATCATTAAGT TTTCTGTGAA TTTACAACAA AACACTCATG TTAATATTTA 241 AATTACAATA TTTCTGAAAA AATATTGTTA GCAAAAGAAA ACCACATCCA ACGTATACAG 301 TAACCCAGGT GTGAACATAC TGAAGCCCTG TTGCTCAGCA GTTTAATACC ATTTAAATAT 361 TTCTCTCATC AGAGATTTAT TNCAAATACA TGAACTTATT ATAATTTACC AGAATACAGT 421 GACATNATTT TTNTTTTTTT TTAAANAATT ATTATCTATT ATATGTAAGT ACCCGGTANC 481 TGTCTTCAAC ACCCAGAANA AGGGGTCCAA TCTTTTACAG AAGGTGTGAC CNCATGTGGN 541 GNCGGGAATT NANNN SEQ ID NO 16 1 CTACGAAATT GTACCTGAGT GACATAAACC GGTAAAGGTG TGTTACTTCG CTTTTTCATG 61 ττττττττττ CTTTTTGTT c TTTGGTCTGA TAAGAAAATG GACAGTTGTG GAAAGTCAGG 121 TAATACAGAT CAGTTTCCAG TTCAGAACCC TAAATCACAC CTACGTGAGT GAGGCTGCTG 181 CACTGCTTTC CTTGGGTTCT TCGGCCGGCC AGACAGCCTT TCTGCTTTGT AAGTGACTTC 241 ATTATAGCCA TCAGCTAATC ACTCCCTCAG CATACACTGG CATCTCCAGA TTACCTGACG 301 GCAGACATAC TTGCTCTGGC TTCAATTAAC ATGCTGTCAA GCATCCCTCT CGACATTCAC 361 ATGGCAACAC AAAACCATGA ATTTCTCTTC ATACAACCAG GAATACACAC TCATAAAGGG 421 AAAGCGTTAN ACCTGATTTT TATTAAATAT TATTTCCTTC CCTTTCCATG CCAAGTTCAC 481 GTTAACATCT TTAGAATACT AAAACGGAAA CCCNCCACTT ANGAAACAAC TGGGAATTGG 541 ACATCCACAG GTACATCACA NA SEQ ID NO 17 1 AGCGGNAGTT TCAGTCTGCG NGACACGCGT GGNAGCCCTT GCCCGGGCCT CCGTGGGTCT 61 GAGGCGCTGC GAGCCCTGGG TAACCACGGC CTCGAGCTGC TGTCCTCACC AAGATCCTCC 121 AATTCTGAAC CAAGAACAAA AAAATGTTTC AGCTTCGTGC ATTTCAAAGA AGGCATTAAC 181 TAGAGCCCAG TTTGGCGGAC AAGTTCTTCA TTCAAAAGAG AGTCCTGTTA GGATCACTGT 241 GTCCAAAAAG AACACATTTG TTTTGGGAGG CATTGATTGT ACTTATTGAA AAGTTTTGAA 301 AATACTGATG TTTAACACCA TTAAGTTCTC TTTGTGTTNC CTAATTA SEQ ID NO 18 1 CCTCAATGTG TCGTAGTACT TGTTCCCGCC AGTCATGAGG AACCTTGCTT TTTCCTGGAG 61 GATCTAACAG AGAATGTTCA GACCCGACCC TTGTATTTGG TCTTTTTGAA GGACTAGTCC 121 GTGAGTAATT GAAATCACTA ACTGACATAG TTCTCNCNGN TATTTCATTA ATAGAGGGAC 181 GGGCACTCTG AGGCCTGGAT GTATTTGGGC CATCGATGCT GTACGCTCGT GCAGAAAGAG 241 GTCTCTGTGA TCCTGACATG ACTGGAGTTC TTCCCATTGA ATGTAACTCT CTGTACGATA 301 AGTAATCTCC TTCAGTACGC CTTGTGGGGT CACCGAGATT TACAGAAGCC GTTGAAGACA 361 CGCTACTCTG TCTCTGAATA GTAATCCGAA TGACTGCTGG CACTAGTCGG TCATTCNGGG 421 AGATACCCAC ATTTCTCCAT GCCTGGCTGG GGCAATCTCT GTTGTAANTG GTATCCAATA 481 TTGGTCTACA TTGTTATGGT TAAAAAAATC TGTTTGGAGA ATGCTTTGCA TACTGTNAAT 541 TTCTGCCTCN CAAATNTTGG AAGGNCCGA SEQ ID NO 19 1 GAGACATTCT GAAGGGCAGG AATGAGGCGC TCTCCCCAGG GNAGATGGTG GTGAGGCTGC 61 TGAGGGGGAA GGTGATATCT TTCCATCTTC TCATTACCTG CCAATCACCA AAGAAGGCCC 121 TCGAGACATT CTGGATGGCA GAAGTGGCAT TTCTGTGGCT AACTTCGACC CGGGCACCTT 181 TAGCCTGATG CGATGTGACT TCTGTGGGGC TGGTTTTGAT ACTCGGGCTG GCCTCTCCAG 241 TCATGCCCGG GCCCACCTTC GTGACTTTGG CATCACCAAC TTGGGGAACT CCACCATCTC 301 ACCATCAACA TCCTTGCAAA NAACTTGCTG GGCCACCT 1.1 SEQ ID NO 20 1 GGAGGGTGTA GCAAGGCCTG AGAACATCTT CCGGGCCGTG GGAGGAGGAG AAGCAGTTGG 61 TGAGTGGCCC AGAGGACTGC CTGGTGGTGG TGGCAACTTC TTGGTCAAAG GTGAGATGTG 121 AAGATCAGAG GGACTTCGGG CTTCTAGTGA GCTGCCAGGA CCTCCAGTGC TCAGCACCTT 181 GGCCAGGGCT TTTGGGCTAG GACCTGGTGG GTGGAGGTGT CCCCCTGGCC TGGATTGGGT 241 CCGTCTCTTC AGGATCTCCC GAAGTGTGTC GATGGGTGAG CCGTTCACAT ACCACTCAGT 301 TACACCCATC TGGCGCANGT GGGAACGTGC ATGGCTANAC AAGCCCTTTC TGTTCTCAAA 361 GAATCACCAC ANAACTCACA GCGGATATCT CTTGTTGGCT CTGGGCCTGA ANCATCTCCG 421 TANATTGGCC CANGGTCCTC ACCCCANTTA NGCGGGAAAG GCATGGTNAA AAGTAACCTT 481 NGC 1,1

Claims: Claims 1. SMAD interacting protein(s) obtainable by a two-hybrid screening assay whereby Smad C-domain fused to a DNA-binding domain as bait and a vertebrate cDNA library as prey are used. 2. SMAD interacting protein (SIP) characterized in that: a) it fails to interact with full size XSmadl in yeast b) it is a member of the family of zinc finger/homeodomain proteins including δ- crystallin enhancer binding protein and/or Drosophila zfh-1 c) SIPI^ binds to E2 box sites d) SIPI^ binds to the Brachyury protein binding site e) it interferes with Brachyury-mediated transcription activation in cells f) it interacts with C-domain of Smad 1 , 2 and/or δ 3. Isolated nucleic acid sequence comprising the nucleotide sequence as provided in SEQ ID NO 1 coding for a SMAD interacting protein or a functional fragment thereof. 4. A recombinant expression vector comprising the isolated nucleic acid sequence according to claim 3 operably linked to a suitable control sequence. δ. Cells transfected or transduced with a recombinant expression vector according to claim 4. 6. A nucleic acid sequence hybridizing to the nucleotide sequence as provided in SEQ ID NO 1 or part thereof and encoding a Smad interacting protein or a functional fragment thereof. 7. A polypeptide comprising the amino acid sequence according to SEQ. ID. NO 2 or a functional fragment thereof. <«3 8. A pharmaceutical composition comprising a nucleic acid sequence according to claim 3 or claim 6. 9. A pharmaceutical composition comprising a polypeptide according to claim 7. 10. Method for diagnosing a disease by using a nucleic acid sequence according to claim 3 or claim 6. 11. Method for diagnosing a disease by using a polypeptide according to claim 7. 12. Method of screening for compounds which affect the interaction between SMAD and SMAD interacting protein. 13. Diagnostic kit comprising a nucleic acid sequence according to claim 3 or claim 6 and/or a polypeptide according to claim 7 for performing a method according to claim 10 or claim 11. 14. Transgenic animal harbouring the nucleic acid sequence of claim 3 or claim 6 in its genome. 1δ. Use of transgenic animal according to claim 14 for testing medicaments and therapy models. 16. Isolated nucleic acid sequence comprising the nucleotide sequence as provided in SEQ ID NO 3 coding for a SMAD interacting protein or a functional fragment thereof. 17. A polypeptide comprising the amino acid sequence according to SEQ.ID.NO 4 or a functional fragment thereof. W 18. Isolated nucleic acid sequence comprising the nucleotide sequence as provided in SEQ ID NO 8 coding for a SMAD interacting protein or a functional fragment thereof. 19. Isolated nucleic acid sequence comprising the nucleotide sequence as provided in SEQ ID NO 10 coding for a SMAD interacting protein or a functional fragment thereof. 20. A polypeptide comprising the amino acid sequence depicted as the one letter code QHLGVGMEAPLLGFPTMNSNLSEVQKVLQIVDNTVSRQKMDCKTEDISKLK necessary for binding with Smad. 21. SMAD interacting protein characterized in that: a) it interacts with full size XSmadl in yeast b) it is a member of a family of proteins which contain a cluster of δ CCCH-type zinc fingers including Drosophila "Clipper" and Zebrafish "No arches" c) it binds single or double stranded DNA d) it has an RNase activity e) it interacts with C-domain of Smadl , 2 and/or δ. 22. A method for post-transcriptional regulation of gene expression by members of the TGF-β superfamily by manipulation or modulation of the interaction between Smad function and/or activity and mRNA stability.

Inventors: HUYLEBROECK DANNY, REMACLE JACQUES, VERSCHUEREN KRISTIN, HUYLEBROECK, DANNY, REMACLE, JACQUES, VERSCHUEREN, KRISTIN
Applicants: HUYLEBROECK DANNY, REMACLE JACQUES, VERSCHUEREN KRISTIN, VLAAMS INTERUNIV INST BIOTECH, HUYLEBROECK, DANNY, REMACLE, JACQUES, VERSCHUEREN, KRISTIN, VLAAMS INTERUNIVERSITAIR INSTITUUT VOOR BIOTECHNOLOGIE
Application year: 1998
Main classification: C07K14
IPC codes: A01K67, A61K31, A61K38, A61K48, C07K14, C12N1, C12N5, C12N15, C12Q1, G01N33