COMPOUNDS ENCODING THE PROTECTIVE M-LIKE PROTEIN OF STREPTOCOCCUS EQUI AND ASSAYS THEREFOR

Abstract: The present invention relates generally to molecular compounds which encode the protective M-like protein of Streptococcus equi (SeM), the amino acid compound which is thereby encoded, and compositions of matter which incorporate either the encoding compounds or the cellular components for which they encode. For instance, vaccines which utilize the amino acid compounds or vectors and cell lines useful to make the amino acid compounds described herein are subjects of the present invention. The present invention provides methods to stimulate S. equi-specific immune response in horses. It also provides diagnostic assays for Streptococcus equi.

Description: Compounds Encoding the Protective M-Like Protein of Streptococcus equi and Assays Therefor This application claims priority to Provisional Patent Application US 60/050,577, filed June 24, 1997. This invention was developed under a grant from the U.S. Government: USDA-NRICGP Number 95-01837, and therefore, the U.S. Government may have certain rights in this invention. CKGfi U P OF TBE ^VE TO The present invention relates generally to molecular compounds which encode the protective M-like protein of Streptococcus equi (SeM), the amino acid compound which is thereby encoded, and compositions of matter which incorporate either the encoding compounds or the cellular components for which they encode. For instance, vaccines which utilize the amino acid compounds or vectors and cell lines useful to make the amino acid compounds described herein are subjects of the present invention. The present invention provides methods to stimulate S. equi-specific immune response in horses. It also provides diagnostic assays for Streptococcus equi. Streptococcus equi, a Lancefield group C streptococcus, causes strangles, a highly contagious disease of the nasopharynx and draining lymph nodes of Equidae. The 58 kDa antiphagocytic M- like protein (SeM) is a major virulence factor and protective antigen and functions by limiting deposition of C3b on the bacterial surface and by directly binding fibrinogen. Boschwitz and Timoney, 17 Microbiol. Pathogenesis 121 (1994) and Boschwitz and Timoney, 62 Infect. Immun. 3515 (1994). In the recent past, S. equi outbreaks on horse farms have been avoided and treated by quarantine of suspect animals; antiseptic handling of food, bedding and housing; and antibiotics when indicated. Vaccines comprising avirulent S. equi or fractions thereof have been described, but success rate has been low. U.S. Patent 5,183,659 describes a vaccine which stimulated a nasopharyngeal antibody response in horses, but the vaccine had a limitation of many such vaccines, which is risk of reversion to virulence and occasional abcess development in vaccinated horses. S. equi is shed in nasal discharges and pus from lymph nodes of affected animals. Routine laboratory detection of the bacterium involves bacteriologic culture of nasal swabs, nasal washes and pus from abscesses and is often difficult because of background contamination, small numbers of the organism, or the presence of 5. zooepidemicus and other β-hemolytic streptococci. Completion of culture and identification usually takes 2 to 3 days, an excessively lengthy interval given the highly contagious nature of strangles and the need to quickly identify shedding horses so that they may be isolated in the early stages of an outbreak. SUMMARY OF THE INVENTION It is an object of the present invention to provide molecular compounds which encode SeM and compositions of matter which incorporate either the encoding compounds or the cellular components for which they encode. It is therefore an object to provide vectors, cell lines and cell membrane preparations using the compounds disclosed. It is yet another object to provide a method to provide assays for detection of Streptococcus equi. Other objects and features of the present invention will be apparent from the following detailed description, examples and claims. Definitions As used herein, the following terms shall have the corresponding meaning set forth. All other terms are intended to have the meaning as understood commonly by those in the relevant field of art. "Biological Sample" means nasal or oral mucus sample or blood sample. "Transformation" and "transfection" mean to cause nucleic acid to enter a cell, whether or not the nucleic acid incorporates into the genome. BRIEF DESCRIPTION OF THE DRA I GS The invention will be further described in conjunction with the accompanying drawings, in which: Figure 1 is the nucleotide and deduced amino acid sequence of SeM. Base and amino acid positions are shown on the left. Putative promoter and ribosomal binding sites (RBS) are boxed and signal and membrane anchor sequences are shown in bold type. Repeats are underlined. Figure 2 is an immunoblot showing reactions of a lysate of E. coli BL21, SeM02 and a mutanolysin extract of S. equi with antisera 216 and 963 to SeM and recombinant SeM respectively. Figure 3 is an immunoblot showing the reactions of mutanolysin extracts of a series of temporally and geographically separated isolates of S. equi with antisera to recombinant SeM. Estimated molecular masses are shown to the right of the figure. Figure 4 is an immunoblot showing linear epitopes recognized by IgA in nasal washes of convalescent (8 weeks) horses. Figure 5 is graph illustrating the regions of SeM reactive with antibodies in horse sera taken 8 weeks after recovery from strangles. DETAILED DESCRIPTION OF THE INVENTION The present invention provides nucleic acid compounds comprising a compound of the following sequence: 1 AGCTTTCTGTCACCTGATGGTCCTTATCAAATACTGTAATTGATAACTTCAAACAGCCCT 61 GTAGAGATTTTACTAACGACATAGTATCCATGCTAAGCGTCACCCCCTTCATAATCCTCA 121 CGGTATCTTATTCTATCTTAAAATTTAAGAAAAGCAAGGATATGCACTTATAATGAAAAA 181 ATAGACATAAAAAACAATAATATACATTCTTGCTTATTAAATAAAAATGACAATGTACTG 241 CATAAAGAAGTTCCTGTCATTAAAATAAAAGTGCCATGAGGTTATAATAGTATGGTAAAA 301 CAAAAAAGTGTGCCCATAACGGGTAGAGAGGAATTGACATATGTTTTTGAGAAATAACAA 361 GCCAAAATTTAGCATCAGAAAACTAAGTGCCGGTGCAGCATCAGTATTAGTTGCAACAAG 421 TGTGTTGGGAGGGACAACTGTAAAAGCGAACTCTGAGGTTAGTCGTACGGCGACTCCAAG 481 ATTATCGCGTGATTTAAAAAATAGATTAAGCGATATAGCCATAAGTGGAGATGCCTCATC 541 AGCCCAAAAAGTTCGAAATCTTCTAAAAGGCGCCTCTGTTGGGGATTTACAGGCATTATT 601 GAGAGGTCTTGATTCAGCAAGGGCTGCGTATGGTAGAGATGATTATTACAATTTATTGAT 661 GCACCTTTCATCGATGTTAAATGATAAACCTGATGGGGATAGAAGACAATTAAGTTTGGC 721 TTCATTACTTGTAGATGAAATTGAAAAGCGGATTGCTGATGGAGATAGGTATGCAAAACT 781 TCTTGAGGCTAAACTTGCAGCTATTAAATCTCAACAAGAAATGCTTAGAGAAAGAGATTC 841 CCAACTTCGAAATCTAGAGAAGGAGAAAGAACAAGAGCTCACAAAAGCTAAAGATGAGCG 901 TCAAGCTCTTACCGAATCATTCAACAAAACTTTATCAAGATCAACAAAAGAGTATAATAA 961 ACTAAAAACAGAACTTGCAAAAGAAAAAGAAAAAGCAGCTAAGATGACTAAGGAATTAGC 1021 AGATAAGCTAAGCAATGCTGAAGCAAGTCGTGATAAAGCCTTTGCAGTATCAAAAGATTT 1081 AGCAGATAAACTAAGTAGTGCTGAAGCAAGTCGTGATAAAGCTTTTGCAGTATCAAAAGA 1141 TTTAGCAGATAAATTGGCAGCTAAAACAGCAGAAGCTGAAAAGTTAATGGAAAACGTTGG 1201 TAGTCTAGACCGCTTGGTAGAGTCTGCAAAACGTGAAATGGCTCAAAAATTAGCAGAAAT 1261 TGATCAATTAACTGCTGATAAGGCTAAGGCTGATGCAGAGCTTGCAGCTGCAAATGACAC 1321 CATTGCATCACTTCAAACAGAGCTAGAAAAAGCTAAGACAGAGCTTGCTGTTTCAGAGCG 1381 TTTGATTGAATCAGGCAAACGTGAAATTGCTGAGCTACAAAAACAAAAAGATGCTTCTGA 1441 TAAGGCTTTAGTAGAATCACAAGCTAATGTAGCAGAGCTTGAAAAACAAAAAGCAGCATC 1501 AGATGCTAAGGTAGCAGAGCTTGAAAAAGAAGTTGAAGCTGCTAAAGCTGAGGTTGCAGA 1561 TCTTAAAGCACAATTAGCTAAGAAAGAAGAAGAGCTTGAAGCCGTTAAGAAGGAAAAAGA 1621 AGCGCTTGAAGCTAAGATTGAAGAGCTCAAAAAAGCTCATGCTGAGGAACTTTCAAAACT 1681 TAAAGAAATGCTTGAGAAGAAAGACCATGCAAATGCAGATCTTCAAGCAGAAATCAATCG 1741 CTTGAAGCAAGAGCTAGCTGACAGGATTAAGTCATTGTCACAAGGTGGTCGTGCTTCACA 1801 AACAAACCCAGGCACTACAACTGCTAAAGCAGGTCAATTGCCATCTACTGGTGAGTCTGC 1861 TAACCCATTCTTCACTATTGCAGCTCTTACTGTCATCGCTGGTGCTGGAATGGCTGTGGT 1921 GTCTCCTAAACGCAAAGAAAACTAAGCTATTTCCTCTTTCCCCAATGGACAATAGCCGAA 1981 ATAATAGAGCGACTATCGTTCTAACACAAAAGCAACAGTCTCCTGTCTGTTGCTTTTTGT 20 1 GATATTAGGGCTCATCAGTCTAGGCTAATGGTTTTCTGCGCTTTATCTGCA [SEQ ID NO. 1 (M-protein (SeM) gene of S. equi)]. The open reading frame starts at 341 and continues to base 1934. Preferably, the compound is SEQ ID NO 1. However, also provided are compounds which are complementary to SEQ ID NO 1 or complementary to portions of SEQ ID NO 1. A preferred portion of SEQ ID NO 1 is that described above as base number 341 to 1943, inclusive (SEQ ID NO 3). Moreover, the compound defined by bases number 452 through approximately 1331 are also preferred (SEQ ID NO 4). As skilled artisans can appreciate, the DNA compounds exemplified above can readily instruct one as to useful, complementary RNA sequences. Any such RNA sequences are also considered within the scope of the present invention. In the present disclosure, this group of DNA and RNA compounds are termed "nucleic acid compounds". Moreover, cells transfected with a (or multiple copies of a) nucleic acid compound of the present invention are provided. Preferred is a cell transfected with SEQ ID NO 1 or a portion thereof. Such cells may be prokaryotic or eukaryotic. Preferred cells include: E.coli, S. cerevisiae, and Salmonella spp. Also provided are vectors transfected with a (or multiple copies of a) nucleic acid compound of the present invention. Preferred vectors include pox viruses, adenoviruses or other viral vectors. The nucleic acid compounds may be obtained by PCR using primers as is skill of the art, or from Gen Bank, accession number U73162. Vectors and cell lines can also be obtained as is skill of the art Moreover, also provided is the amino acid compound: 5 10 15 20 25 30 1 M F L R N N K P K F S I R K L S A G A A S V L V A T S V L G 31 G T T V K A N S E V S R T A T P R L S R D L K N R S D I A 61 I S G D A S S A Q K V R N L L K G A S V G D L Q A L R G 91 D S A RAA Y G R D D Y Y N L LMH S S M L ND K P D G D 121 R R Q L S A S L LVD E I E R I AD G D RYA K L L E A 151 K L A A I K S Q Q EM L R E R D S Q L RNL E K E KE Q E L 181 T K A K D E RQA L T E S F N KT L S R S T KE Y N K L K T 211 E L A K E K E KAAKM T K E L AD K L S NAE A S RD KA 241 F AV S K D L AD K L S S A E A S RD KAF AV S KD A D 271 K L AA K T A E A E K L E NVG S L DRLVE S A KR EM 301 A Q K L A E I D Q L TA D KA KAD A E L AAAN D T I A S 331 L Q T E L E KA K T E L AV S E R L I E S G KR E I AE L Q 361 K Q K D A S D K A LV E S Q A NVA E L E K Q KAA S D A K 391 VA E L E K E V E AA K A E V AD L K AQ L AK K E E E L E 421 AV K K E K E A EA K I E E L K KAHAE E L S K K E M 451 L E K K D H ANAD L Q A E I NR L KQ E AD R I K S S 481 Q G G R A S Q TN P G T T T A KAG Q L P S TG E S AN P F 511 F T I AA L TV I AG AG MAVV S P KRK EN which is SEQ ID NO 2. The present invention also includes portions of the above sequence. The most preferred portion of the above sequence is: residues 37 to 330 (SEQ ID NO 5) however, one skilled in the art recognizes that any especially antigenic portion is commercially significant, and is included in the scope of the present invention. The amino acid compounds can be obtained either by overexpression and purification in microorganisms, or, in some cases, by conventional peptide synthesis. Therefore, a vaccine for S. equi is provided by the present invention. A vaccine which is administered intranasally or orally is a preferred embodiment. A vaccine of the present invention can comprise the entire SEQ ID NO 2, or portions thereof. The vaccines of the present invention can be of any pharmaceutically-acceptable formulation. For example, SEQ ID NO 5 can be incorporated into bilayer vesicles (liposomes), in an aqueous medium according to known procedures, such as that described by Debs et al., 265 J. Biol. Chem. 10189 (1990). Any available carrier or tiposome-form ng lipid may be utilized in any formulation which delivers SeM antigen, for example, poly-DL-Lactide-co-glycolide may be utilized in an intranasal spray formulation which comprises SEQ ID NO 5. Formulations which include adjuvants which enhance the delivery of antigen to the mucosa, such as small amounts of the B- subunit of the cholera toxin are also within the scope of the present invention. The present invention also provides methods to stimulate a S. equi -specific immune response in horses comprising administering a compound of SEQ ID NO 2 or portions thereof. Introduction of the antigen nasally or orally is preferred. Lastly, the present invention provides methods to determine the presence of 5. equi in horses via polymerase chain reaction. The polymerase chain reaction diagnostic assay of the present invention can be accomplished according to known methods so long as primers for the sequence herein disclosed are used as some of the starting materials. Methods for PCR can be found in many journals and books, for instance, the PCR diagnostic methods can be accomplished according to Techniques in PCR, PCR, Current Protocols in Molecular Biology or Maniatis. As skilled artisans are aware, preferred primers are those which are at least 50% GC content, ideally 19 to 23 base pairs in length, and are not capable of annealing to duplicate sections of the target DNA. Examples Example 1: Cloning. Sequencing and Expression of SeM Chromosomal DNA of S. equi CF32 was partially digested with Tsp 5091 (New England Biolabs Inc., Beverly MA) and 3-8 kb fragments ligated to λ ZAPII digested with EcoRI (Stratagene, LaJolla, CA). After packaging (Gigapack II) (Stratagene, LaJolla, CA) and transfection into E. coli XLI-Blue MRF (Stratagene, LaJolla, CA) , the library was plated, amplified and stored at -70 C in 7% DMSO. The library was screened on duplicate nitrocellulose discs by using rabbit 216 antiserum (1:4000 dilution) to the acid extracted 41kDa fragment of SeM. Several reactive plaques were screened until all plaques gave a positive signal. Proteins in these phage ly sates were separated by SDS PAGE and immunoblotted with serum 216. A plasmid containing a 3.5kb fragment encoding SeM was excised from a positive phage and the resulting plasmid designated pSeMOl. Nucleotide sequencing was performed on Hindiπ, Pvu II and Hind πi-Pvu π fragments of the S. equi insert in pSK by automated cycle sequencing. Sequences were aligned and connected by DNASIS (Hitachi Software Engineering America, Ltd., San Diego, CA). SeM without its signal sequence was subcloned into the Bam HI site of the pET15b (Novagen, Madison, WI) expression vector using the polymerase chain reaction (PCR) with pSeMOl as template and primers SeM-F (gcggatcCGAACTCTGAGGTTAGTCGT) (SEQ ID NO 6) and SeM- R (gcggatccATAGCTTAGTTTTCTTTGCG) (SEQ ID NO 7). The resulting plasmid was designated pSeM02 and transformed into E. coli BL21 (DE3). Recombinant SeM was isolated from a lysate of BL21 by affinity chromatography on His-Bind Resin (Novagen, Madison, WI). Analysis of the connected sequences revealed the presence of one open reading frame of 1605 nucleotides encoding the seM gene (Fig 1). Translation of seM revealed a basic (CH +4.5) preprotein of 535 amino acids of calculated molecular mass 58,251 and pi of 8.67. N terminal amino acid sequence (residues 37-52) was identical to that obtained by direct microsequencing of the 41kDa SeM fragment purified from an acid extract of S. equi .The predicted amino acid sequence exhibits features typical of streptococcal surface proteins. The signal sequence is 36 residues. The N terminus of the mature protein has a net positive charge. The anchor membrane spanning region and charged tail sequences are similar to those of other group A and C streptococcal sequences. Two direct repeats (21 residues) are located between residues 226 and 267. Other shorter direct repeats varying in length from 3 to 6 residues occur in the carboxy terminal half of the molecule. Analysis of the secondary structure of the translated protein shows an extensive region of alpha helix extendnng approximately from residue 120 to 480. The secondary structure prediction shows turns in the vicinity of residues 120 and 480 to 500. Example 2: Amino Acid Sequence Determination. Acid extracted SeM (2 mg) purified as described in Example 3 was loaded onto a 2 cm wide slot on a 1.5 mm thick acrylamide (9%) gel for preparative SDS PAGE. The gel was prerun with 0.1 mM thioglycolic acid for 40 mins at 100V before loading the protein. Following electrophoresis, and electrophoretic transfer to Immobilon P (Millipore), the major 41 and 46kDa fragments of SeM were identified by staining for 1 min. with 0.025% Coomassie blue in 40% methanol and 5% glacial acetic acid followed by destaining for 2 min in 30% methanol and 5% glacial acetic acid. The 41kDa band was excised and microsequence analysis performed on a model 477A pulse liquid phase sequencer (Applied Bio Systems) at the University of Kentucky Macromolecular Synthesis Laboratory. Example 3: Protein Extraction M-like protein was extracted from an overnight culture (18h) of S. equi by hot acid extraction (Lancefield and Perlmann. 96 J. Exp. Med. 71 (1952) and adsorbed to a column of hydroxy apatite in lOmM phosphate buffer pH 7.2. The M-like proteins were eluted in 0.2M Na2HPO4, desalted on Sephadex G25 and lyophilized. The pellet was dissolved in 25% acetonitrile +0.5% trifluoroacetic acid and loaded on a phenyl RP reverse phase column (Bio-Rad, San Francisco CA) connected to a Waters 650 protein purification system (Waters, Marlborough, MA). Protein was eluted using a linear gradient of 25-65% acetonitrile+0.5% TFA. A dot immunoblot on cellulose nitrate using SeM specific rabbit antiserum was used to screen peaks. The peak containing SeM protein eluted at a concentration of approximately 42% acetonitrile. Positive peaks from several runs were pooled and further purified on the same column. Purified protein was lyophilized, resuspended in PBS and stored in aliquots at -20 C. Mutanolysin extracts of S. equi strains were performed as described previously (Galdn and Timoney, 26 /. Clin. Microbiol. 1142 (1988). Example 4: Antisera Antiserum was raised against SeM purified by a combination of hydroxyapatite and reverse- phase chromatography A New Zealand white rabbit (216) was injected subcutaneously with 50 μg SeM in complete Freund's adjuvant followed at 3 week intervals by 2 similar doses emulsified in incomplete Freund's adjuvant. Serum was harvested at 8 weeks. Rabbit 963 was similarly hyperimmunized with recombinant SeM from E. coli sonicate. Rabbit Ec was immunized with a lysate of E. coli NovaBlue containing plasmid pT7 Blue without an insert. Adult ICR mice were immunized with 25 μg SeM purified from E. coli sonicate by HIS-Tag chromatography. Purified SeM (25μg) was mixed with 5μg mycolic dipeptide (MDP) and alhydrogel (30%) and administered subcutaneously in a dose volume of 100 ml. Two subcutaneous booster doses containing 25 μg SeM but no MDP were administered 10 and 20 days later. Mice were bled at 28 days. All antisera were stored at -70 C until used. Example 5: Immunoblotting Proteins in streptococcal extracts or purified from E. coli sonicate were separated by SDS- 10% polyacrylamide gel electrophoresis (PAGE) and electroblotted to a sheet of nitrocellulose and incubated in the appropriate antiserum diluted 1:200 in PBS and then in peroxidase-conjugated protein G (1:4000). Reactive bands were visualized by using 4-chloro-l-naphthol (0.5mg/ml) as substrate. Rabbit 963 antiserum to recSeM reacted with a 58kDa protein in a mutanolysin extract of S. equi and with a slightly larger 60k Da protein expressed by E. coli BL21 containing pSeM02 (Fig. 2). The same protein bands were recognized by rabbit 216 antiserum to the 41kDa fragment of SeM. Fig. 3 shows the immunoblot profiles of mutanolysin extracts of a series of S. equi isolates collected at different times in the US and Europe. Antiserum to recSeM recognized two protein bands of 58 and 56 kDa in all the extracts. Example 6: ELISA An acid extracted fragment (41kDa) of SeM purified by preparative electrophoresis on agarose was used to coat wells (2.5mg/well) of polystyrene ELISA plates (Costar, 25880, Corning Glass Company, Coming NY). After washing and blocking in 0.1M phosphate buffered saline (PBS) containing 0.05 Tween 20 and 1% bovine serum albumin, mouse or rabbit sera diluted 1:80 and 1:200 respectively in PBS were added in triplicate to the wells (100 ml/well). After incubation for 3 hours at 37 C, bound IgG was detected with either peroxidase conjugated protein G (1:4000) or rabbit anti-mouse IgG followed by O-phenylene diamine (0.000 ImM) solution. Mean OD values of triplicate readings were blanked against wells containing antigen and PBS. Example 7: Opsonic Assay Equine neutrophils were separated from freshly collected heparinized horse blood with a discontinuous Percoll gradient Pycock et al., 42 Res. Vet. Sci. 411 (1987). Neutrophils from 7 ml of blood were suspended in RPMl medium (Gibco, Grand Island, NY) and 80 ml aliquots (6 X 105 cells) added in triplicate to wells of a 24 well cell culture cluster (Costar, Cambridge, Mass). Each well contained a circular glass coverslip (12 mm diameter). The cell cluster was incubated for 2 h at 37 C in 5% CO2 and the cells washed once with PBS to remove non-adherent neutrophils. The test organisms (S. equi CF32 and S. zooepidemicus W60) were grown overnight at 37 C in THB with 0.2% yeast extract to an OD of 0.6. Twenty ml of culture was added to 25 ml serum and 450 ml RPMl added. After the plate was gently shaken for 30 minutes at 37 C the coverslips were washed once with PBS (pH 7.2) fixed in 10% formalin and stained with Giemsa. The numbers of neutrophils with associated streptococci per 100 cells were then counted for each serum and expressed as a percentage. All assays were performed in triplicate. The differences in the opsonic activities of immune and control sera were evaluated statistically by a Student t-test (Unpaired Observations) based on the means of three experiments. Sera from mice immunized with purified recombinant SeM showed 15 times greater (p<0.01) opsonic activity for S. equi than non-immune mouse sera. These sera also showed strong antibody responses by ELISA to the 41kDa fragment of SeM (Example 6). Example 8: Fibrinogen Binding Assay Equine fibrinogen (0.5mg well) was bound to wells of 96 well polystyrene ELISA plates (Costar). After washing and blocking, recombinant SeM (0.4mg/well) was added in triplicate to separate wells and incubated for 2 hours at 37 C. After washing, 1:80 dilutions of rabbit antisera to the 41 kDa fragment of SeM was added to the appropriate wells and incubated at 37 C for 2 hours. Control wells consisted of wells from which fibrinogen was omitted and wells treated with sera from the same rabbits before immunization. Amounts of specific rabbit antibody that bound to SeM fixed to fibrinogen were detected as described under ELISA. SeM showed strong binding to equine fibrinogen immobilized on wells of ELISA plates. Mean ELISA value (±SD) for SeM bound to fibrinogen after correction for non-specific binding of the protein to blocked well surfaces was 0.9 ± 0.1. The corrected value was 0.1 ± 0.1 when preimmune sera were used to assay for binding of the streptococcal protein. Example 9: Nucleotide Sequence Accession Numbers The Gen Bank accession number for the nucleotide sequence of seM is U73162. Example 10: Homologies With the exception of signal and membrane anchor sequences, no homology of SeM with group A or G M protein sequences in the GenBank database was detected. SeM showed some homology between its signal (39% identity) and membrane anchor (66% identity) sequences with those in the database. Example 11: Presence of SeM-binding antibodies in convalescent horses Regions of SeM reactive with antibodies in horse sera taken 8 weeks after recovery from strangles are shown in Figure 3. Most horses showed reponses to epitopes on the central region of SeM (residues 170 to 270). Responses of individual horses to the N terminal third and carboxy terminal regions of SeM were much more variable. No horse responded to peptide 151-166 alone. Linear epitopes recognized by IgA in convalescent (8 weeks) nasal washes are found on the same region reactive with serum antibody (Figure 4). Multiple epitopes are targeted and, as in the case of serum antibodies, there is considerable variation in the responses of individual horses. Example 12: Immunizations of non-exposed yearling ponies Two groups of 3 yearling Welsh ponies were immunized with microencapsulated recombinant fusion peptide of the M-protein (SeM, amino acids 231-330) produced in E. coli BL21 and with a microencapsulated extract of the host E. coli alone. Encapsulated protein (lOOμg) was sprayed into each nostril on day 1 using a nasal atomizer. Booster doses of 150 and 350 μg were given on days 7 and 42, respectively. Serum and nasal washes were collected at days 1, 7, 21 and 42 and assayed for SeM-specific IgG in serum and IgA in nasal washes, Specific mucosal Ig A responses to SeM were evident at day 21 in 2 of the 3 ponies and in all ponies at day 49. None of the 3 control ponies immunized with E. coli extract alone responded to SeM. No serum antibody responses were detected in any pony. These studies demonstrate the feasibility of selectively-inducing specific mucosal antibody responses in horses by using a microencapsulated streptococcal peptide. Example 13: PCR Diagnostic Assay Nasal swabs (Precision Dynamic Corp. San Fernando, CA; Culturette, Baxter Healthcare Corp., Deerfield, IL) were collected from affected and exposed in-contact horses 1 to 5 days after clinical diagnosis of strangles on farms A, B, C, and D. Some horses were sampled more than once over the following 3 weeks. Nasal washes were collected from horses at UK farm 15 and 85 days following commingling exposure to 2 horses with clinical strangles. All these horses developed strangles within 17 days of commingling exposure. Nasal washes were collected by instilling 50 ml phosphate buffered saline (pH 7.2) via a 8 mm diameter latex tube inserted 15 cm into the nostril and collecting the fluid that drained out. The fluid was centrifuged at 3000g and the pelleted debris separated for culture and PCR. Swabs and nasal wash pellets were cultured on Columbia CNA horse blood agar and incubated for 18 hours at 37 °C. Beta hemolytic colonies were subcultured and their fermentation behavior tested in lactose, sorbitol and trehalose broths. Mucoid beta-hemolytic colonies that did not ferment any of these sugars were identified as S. equi. DNA for PCR from nasal swabs and washes was prepared as follows: Swab tips were placed in 300 μl of sterile water, vortexed, the tips removed and the fluid centrifuged at 14, 000 g for 10 minutes. The sediments were resuspended in 20 μl of K-buffer (IX Gen Amp Buffer TJ, Perkin Elmer, 0.5% Tween 20, lOOμg/ml Proteinase K). Nasal wash pellets were suspended in an equal volume of K-buffer. The suspensions were incubated for 30 minutes at 55°C, boiled for 5 minutes and then centrifuged for 5 minutes at 14,000 g. The reaction mix for PCR in a total volume of 30 μl was prepared in Gen Amp Buffer π and contained 2mM MgCl 2 , 0.2mM dNTP, 0.5 units Taq polymerase, 0.25 μM SeM6 and SeM7 primers, and 2-5μl sample. The primer sequences were 5'-TGCATAAAGAAGTTCCTGTC (SeM7-forward (bases 239-258) SEQ ID NO 8) and 5'-GATTCGGTAAGAGCTTGACG (SeM reverse(bases 899-918) SEQ ID NO 9). Mineral oil (30 μl) was added to seal the reaction mix. Cycling was performed as follows: -92°C for 2 minutes; 92°C for 1 minute; 58 °C for 1 minute; 72 °C for 1 minute (30 times); 72°C for 5 minutes; 4°C final. The PCR products were separated by ethidium bromide agarose gel electrophoresis. The SeM fragment amplified with primers SeM6 and 7 was 679 bp. The PCR detected a 679 bp DNA fragment in 37 specimens including 14 of 15 that were positive by culture. The sensitivity of PCR appears to be much greater than culture. Although the present invention has been fully described, it is to be noted that various changes and modifications are apparent to those skilled in the art. Such changes and modifications are to be understood as included within the scope of the present invention as defined by the appended claims. SEQUENCE LISTING <110> Timoney, John F. Artiushin, Sergey University of Kentucky Research Foundation <120> Compounds Encoding the Protective M-Like Protein of Streptococcus equi and Assays Therefor <130> P-1045 <140> filed herewith <141> 1998-06-23 <150> 60/050,577 <151> 1997-06-24 <160> 9 <170> Patentln Ver. 2.0 <210> 1 <211> 2091 <212> DNA <213> Streptococcus equi <400> 1 agctttctgt cacctgatgg tccttatcaa atactgtaat tgataacttc aaacagccct 60 gtagagattt tactaacgac atagtatcca tgctaagcgt cacccccttc ataatcctca 120 cggtatctta ttctatctta aaatttaaga aaagcaagga tatgcactta taatgaaaaa 180 atagacataa aaaacaataa tatacattct tgcttattaa ataaaaatga caatgtactg 240 cataaagaag ttcctgtcat taaaataaaa gtgccatgag gttataatag tatggtaaaa 300 caaaaaagtg tgcccataac gggtagagag gaattgacat atgtttttga gaaataacaa 360 gccaaaattt agcatcagaa aactaagtgc cggtgcagca tcagtattag ttgcaacaag 420 tgtgttggga gggacaactg taaaagcgaa ctctgaggtt agtcgtacgg cgactccaag 480 attatcgcgt gatttaaaaa atagattaag cgatatagcc ataagtggag atgcctcatc 540 agcccaaaaa gttcgaaatc ttctaaaagg cgcctctgtt ggggatttac aggcattatt 600 gagaggtctt gattcagcaa gggctgcgta tggtagagat gattattaca atttattgat 660 gcacctttca tcgatgttaa atgataaacc tgatggggat agaagacaat taagtttggc 720 ttcattactt gtagatgaaa ttgaaaagcg gattgctgat ggagataggt atgcaaaact 780 tcttgaggct aaacttgcag ctattaaatc tcaacaagaa atgcttagag aaagagattc 840 ccaacttcga aatctagaga aggagaaaga acaagagctc acaaaagcta aagatgagcg 900 tcaagctctt accgaatcat tcaacaaaac tttatcaaga tcaacaaaag agtataataa 960 actaaaaaca gaacttgcaa aagaaaaaga aaaagcagct aagatgacta aggaattagc 1020 agataagcta agcaatgctg aagcaagtcg tgataaagcc tttgcagtat caaaagattt 1080 agcagataaa ctaagtagtg ctgaagcaag tcgtgataaa gcttttgcag tatcaaaaga 1140 tttagcagat aaattggcag ctaaaacagc agaagctgaa aagttaatgg aaaacgttgg 1200 tagtctagac cgcttggtag agtctgcaaa acgtgaaatg gctcaaaaat tagcagaaat 1260 tgatcaatta actgctgata aggctaaggc tgatgcagag cttgcagctg caaatgacac 1320 cattgcatca cttcaaacag agctagaaaa agctaagaca gagcttgctg tttcagagcg 1380 tttgattgaa tcaggcaaac gtgaaattgc tgagctacaa aaacaaaaag atgcttctga 1440 taaggcttta gtagaatcac aagctaatgt agcagagctt gaaaaacaaa aagcagcatc 1500 agatgctaag gtagcagagc ttgaaaaaga agttgaagct gctaaagctg aggttgcaga 1560 tcttaaagca caattagcta agaaagaaga agagcttgaa gccgttaaga aggaaaaaga 1620 agcgcttgaa gctaagattg aagagctcaa aaaagctcat gctgaggaac tttcaaaact 1680 taaagaaatg cttgagaaga aagaccatgc aaatgcagat cttcaagcag aaatcaatcg 1740 cttgaagcaa gagctagctg acaggattaa gtcattgtca caaggtggtc gtgcttcaca 1800 aacaaaccca ggcactacaa ctgctaaagc aggtcaattg ccatctactg gtgagtctgc 1860 taacccattc ttcactattg cagctcttac tgtcatcgct ggtgctggaa tggctgtggt 1920 gtctcctaaa cgcaaagaaa actaagctat ttcctctttc cccaatggac aatagccgaa 1980 ataatagagc gactatcgtt ctaacacaaa agcaacagtc tcctgtctgt tgctttttgt 2040 gatattaggg ctcatcagtc taggctaatg gttttctgcg ctttatctgc a 2091 <210> 2 <211> 534 <212> PRT <213> Streptococcus equi <400> 2 Met Phe Leu Arg Asn Asn Lys Pro Lys Phe Ser lie Arg Lys Leu Ser 1 5 10 15 Ala Gly Ala Ala Ser Val Leu Val Ala Thr Ser Val Leu Gly Gly Thr 20 25 30 Thr Val Lys Ala Asn Ser Glu Val Ser Arg Thr Ala Thr Pro Arg Leu 35 40 45 Ser Arg Asp Leu Lys Asn Arg Leu Ser Asp lie Ala He Ser Gly Asp 50 55 60 Ala Ser Ser Ala Gin Lys Val Arg Asn Leu Leu Lys Gly Ala Ser Val 65 70 75 80 Gly Asp Leu Gin Ala Leu Leu Arg Gly Leu Asp Ser Ala Arg Ala Ala 85 90 95 Tyr Gly Arg Asp Asp Tyr Tyr Asn Leu Leu Met His Leu Ser Ser Met 100 105 110 Leu Asn Asp Lys Pro Asp Gly Asp Arg Arg Gin Leu Ser Leu Ala Ser 115 120 125 Leu Leu Val Asp Glu He Glu Lys Arg He Ala Asp Gly Asp Arg Tyr 130 135 140 Ala Lys Leu Leu Glu Ala Lys Leu Ala Ala He Lys Ser Gin Gin Glu 145 150 155 160 Met Leu Arg Glu Arg Asp Ser Gin Leu Arg Asn Leu Glu Lys Glu Lys 165 170 175 Glu Gin Glu Leu Thr Lys Ala Lys Asp Glu Arg Gin Ala Leu Thr Glu 180 185 190 Ser Phe Asn Lys Thr Leu Ser Arg Ser Thr Lys Glu Tyr Asn Lys Leu 195 200 205 Lys Thr Glu Leu Ala Lys Glu Lys Glu Lys Ala Ala Lys Met Thr Lys 210 215 220 Glu Leu Ala Asp Lys Leu Ser Asn Ala Glu Ala Ser Arg Asp Lys Ala 225 230 235 240 Phe Ala Val Ser Lys Asp Leu Ala Asp Lys Leu Ser Ser Ala Glu Ala 245 250 255 Ser Arg Asp Lys Ala Phe Ala Val Ser Lys Asp Leu Ala Asp Lys Leu 260 265 270 Ala Ala Lys Thr Ala Glu Ala Glu Lys Leu Met Glu Asn Val Gly Ser 275 280 285 Leu Asp Arg Leu Val Glu Ser Ala Lys Arg Glu Met Ala Gin Lys Leu 290 295 300 Ala Glu He Asp Gin Leu Thr Ala Asp Lys Ala Lys Ala Asp Ala Glu 305 310 315 320 Leu Ala Ala Ala Asn Asp Thr He Ala Ser Leu Gin Thr Glu Leu Glu 325 330 335 Lys Ala Lys Thr Glu Leu Ala Val Ser Glu Arg Leu He Glu Ser Gly 340 345 350 Lys Arg Glu He Ala Glu Leu Gin Lys Gin Lys Asp Ala Ser Asp Lys 355 360 365 Ala Leu Val Glu Ser Gin Ala Asn Val Ala Glu Leu Glu Lys Gin Lys 370 375 380 Ala Ala Ser Asp Ala Lys Val Ala Glu Leu Glu Lys Glu Val Glu Ala 385 390 395 400 Ala Lys Ala Glu Val Ala Asp Leu Lys Ala Gin Leu Ala Lys Lys Glu 405 410 415 Glu Glu Leu Glu Ala Val Lys Lys Glu Lys Glu Ala Leu Glu Ala Lys 420 425 430 He Glu Glu Leu Lys Lys Ala His Ala Glu Glu Leu Ser Lys Leu Lys 435 440 445 Glu Met Leu Glu Lys Lys Asp His Ala Asn Ala Asp Leu G n Ala Glu 450 455 460 He Asn Arg Leu Lys Gin Glu Leu Ala Asp Arg He Lys Ser Leu Ser 465 470 475 480 Gin Gly Gly Arg Ala Ser Gin Thr Asn Pro Gly Thr Thr Thr Ala Lys 485 490 495 Ala Gly Gin Leu Pro Ser Thr Gly Glu Ser Ala Asn Pro Phe Phe Thr 500 505 510 He Ala Ala Leu Thr Val He Ala Gly Ala Gly Met Ala Val Val Ser 515 520 525 Pro Lys Arg Lys Glu Asn 530 <210> 3 <211> 1603 <212> DNA <213> Streptococcus equi <400> 3 atgtttttga gaaataacaa gccaaaattt agcatcagaa aactaagtgc cggtgcagca 60 tcagtattag ttgcaacaag tgtgttggga gggacaactg taaaagcgaa ctctgaggtt 120 agtcgtacgg cgactccaag attatcgcgt gatttaaaaa atagattaag cgatatagcc 180 ataagtggag atgcctcatc agcccaaaaa gttcgaaatc ttctaaaagg cgcctctgtt 240 ggggatttac aggcattatt gagaggtctt gattcagcaa gggctgcgta tggtagagat 300 gattattaca atttattgat gcacctttca tcgatgttaa atgataaacc tgatggggat 360 agaagacaat taagtttggc ttcattactt gtagatgaaa ttgaaaagcg gattgctgat 420 ggagataggt atgcaaaact tcttgaggct aaacttgcag ctattaaatc tcaacaagaa 480 atgcttagag aaagagattc ccaacttcga aatctagaga aggagaaaga acaagagctc 540 acaaaagcta aagatgagcg tcaagctctt accgaatcat tcaacaaaac tttatcaaga 600 tcaacaaaag agtataataa actaaaaaca gaacttgcaa aagaaaaaga aaaagcagct 660 aagatgacta aggaattagc agataagcta agcaatgctg aagcaagtcg tgataaagcc 720 tttgcagtat caaaagattt agcagataaa ctaagtagtg ctgaagcaag tcgtgataaa 780 gcttttgcag tatcaaaaga tttagcagat aaattggcag ctaaaacagc agaagctgaa 840 aagttaatgg aaaacgttgg tagtctagac cgcttggtag agtctgcaaa acgtgaaatg 900 gctcaaaaat tagcagaaat tgatcaatta actgctgata aggctaaggc tgatgcagag 960 cttgcagctg caaatgacac cattgcatca cttcaaacag agctagaaaa agctaagaca 1020 gagcttgctg tttcagagcg tttgattgaa tcaggcaaac gtgaaattgc tgagctacaa 1080 aaacaaaaag atgcttctga taaggcttta gtagaatcac aagctaatgt agcagagctt 1140 gaaaaacaaa aagcagcatc agatgctaag gtagcagagc ttgaaaaaga agttgaagct 1200 gctaaagctg aggttgcaga tcttaaagca caattagcta agaaagaaga agagcttgaa 1260 gccgttaaga aggaaaaaga agcgcttgaa gctaagattg aagagctcaa aaaagctcat 1320 gctgaggaac tttcaaaact taaagaaatg cttgagaaga aagaccatgc aaatgcagat 1380 cttcaagcag aaatcaatcg cttgaagcaa gagctagctg acaggattaa gtcattgtca 1440 caaggtggtc gtgcttcaca aacaaaccca ggcactacaa ctgctaaagc aggtcaattg 1500 ccatctactg gtgagtctgc taacccattc ttcactattg cagctcttac tgtcatcgct 1560 ggtgctggaa tggctgtggt gtctcctaaa cgcaaagaaa act 1603 <210> 4 <211> 880 <212> DNA <213> Streptococcus equi <400> 4 tctgaggtta gtcgtacggc gactccaaga ttatcgcgtg atttaaaaaa tagattaagc 60 gatatagcca taagtggaga tgcctcatca gcccaaaaag ttcgaaatct tctaaaaggc 120 gcctctgttg gggatttaca ggcattattg agaggtcttg attcagcaag ggctgcgtat 180 ggtagagatg attattacaa tttattgatg cacctttcat cgatgttaaa tgataaacct 240 gatggggata gaagacaatt aagtttggct tcattacttg tagatgaaat tgaaaagcgg 300 attgctgatg gagataggta tgcaaaactt cttgaggcta aacttgcagc tattaaatct 360 caacaagaaa tgcttagaga aagagattcc caacttcgaa atctagagaa ggagaaagaa 420 caagagctca caaaagctaa agatgagcgt caagctctta ccgaatcatt caacaaaact 480 ttatcaagat caacaaaaga gtataataaa ctaaaaacag aacttgcaaa agaaaaagaa 540 aaagcagcta agatgactaa ggaattagca gataagctaa gcaatgctga agcaagtcgt 600 gataaagcct ttgcagtatc aaaagattta gcagataaac taagtagtgc tgaagcaagt 660 cgtgataaag cttttgcagt atcaaaagat ttagcagata aattggcagc taaaacagca 720 gaagctgaaa agttaatgga aaacgttggt agtctagacc gcttggtaga gtctgcaaaa 780 cgtgaaatgg ctcaaaaatt agcagaaatt gatcaattaa ctgctgataa ggctaaggct 840 gatgcagagc ttgcagctgc aaatgacacc attgcatcac 880 <210> 5 <211> 294 <212> PRT <213> Streptococcus equi <400> 5 Asn Ser Glu Val Ser Arg Thr Ala Thr Pro Arg Leu Ser Arg Asp Leu 1 5 10 15 Lys Asn Arg Leu Ser Asp He Ala He Ser Gly Asp Ala Ser Ser Ala 20 25 30 Gin Lys Val Arg Asn Leu Leu Lys Gly Ala Ser Val Gly Asp Leu Gin 35 40 45 Ala Leu Leu Arg Gly Leu Asp Ser Ala Arg Ala Ala Tyr Gly Arg Asp 50 55 60 Asp Tyr Tyr Asn Leu Leu Met His Leu Ser Ser Met Leu Asn Asp Lys 65 70 75 80 Pro Asp Gly Asp Arg Arg Gin Leu Ser Leu Ala Ser Leu Leu Val Asp 85 90 95 Glu He Glu Lys Arg He Ala Asp Gly Asp Arg Tyr Ala Lys Leu Leu 100 105 110 Glu Ala Lys Leu Ala Ala He Lys Ser Gin Gin Glu Met Leu Arg Glu 115 120 125 Arg Asp Ser Gin Leu Arg Asn Leu Glu Lys Glu Lys Glu Gin Glu Leu 130 135 140 Thr Lys Ala Lys Asp Glu Arg Gin Ala Leu Thr Glu Ser Phe Asn Lys 145 150 155 160 Thr Leu Ser Arg Ser Thr Lys Glu Tyr Asn Lys Leu Lys Thr Glu Leu 165 170 175 Ala Lys Glu Lys Glu Lys Ala Ala Lys Met Thr Lys Glu Leu Ala Asp 180 185 190 Lys Leu Ser Asn Ala Glu Ala Ser Arg Asp Lys Ala Phe Ala Val Ser 195 200 205 Lys Asp Leu Ala Asp Lys Leu Ser Ser Ala Glu Ala Ser Arg Asp Lys 210 215 220 Ala Phe Ala Val Ser Lys Asp Leu Ala Asp Lys Leu Ala Ala Lys Thr 225 230 235 240 Ala Glu Ala Glu Lys Leu Met Glu Asn Val Gly Ser Leu Asp Arg Leu 245 250 255 Val Glu Ser Ala Lys Arg Glu Met Ala Gin Lys Leu Ala Glu He Asp 260 265 270 Gin Leu Thr Ala Asp Lys Ala Lys Ala Asp Ala Glu Leu Ala Ala Ala 275 280 285

Claims: WHAT IS CLAIMED IS: 1. A compound comprising a compound of the formula: SEQ ID NO 1. 2. A compound of claim 1 , which is SEQ ID NO 1. 3. A prokaryotic cell comprising a compound of claim 1. 4. A eukaryotic cell comprising a compound of claim 1. 5. A cell of claim 3, which is E. coli. 6. A cell of claim 3 which is Salmonella spp. 7. A compound of the formula: SEQ ID NO 2 or a portion thereof. 8. A vaccine comprising a compound of claim 7. 9. A compound of claim 7, which is SEQ ID NO 5. 10. A compound of claim 9, which is incorporated into a liposome. 11. A compound of claim 10, which further comprises the B-subunit of the cholera toxin. 12. A method to induce S. equi-specific immunity in a horse, comprising administering a compound of claim 9. 13. A method to identify a horse infected with S. equi, comprising: obtaining a biological sample from the horse; preparing the sample for PCR; conducting PCR using appropriate primers for SEQ ID NO 1; electrophoresing the end product; and ascertaining the presence or absence of the appropriately-sized fragment 14. A method of claim 13, wherein the primers used are SEQ ID NO 8 and SEQ ID NO 9.

Inventors: ARTIUSHIN SERGEY, TIMONEY JOHN F, ARTIUSHIN, SERGEY, TIMONEY, JOHN, F.
Applicants: ARTIUSHIN SERGEY, TIMONEY JOHN F, ARTIUSHIN, SERGEY, TIMONEY, JOHN, F.
Application year: 1998
Main classification: C07H21
IPC codes: A61K39, A61P37, C07K14, C12N1, C12N5, C12N15, C12Q1, C12R1