A SOLUBLE VACCINIA VIRUS PROTEIN THAT BINDS CHEMOKINES

Abstract: Uses for a novel chemokine-binding protein designated A41L, and chemokine-binding fragments thereof, for the treatment of conditions such as inflammation. The A41L protein binds to chemokines in the CXC group.

Description: A Soluble Vaccinia Virus Protein that Binds Chemokines This invention relates to a novel chemokine-binding protein and chemokine-binding fragments thereof. In particular, the invention relates to uses of the protein or fragments in a medicament, for example as an anti-viral or an anti-inflammatory agent; and to methods for the detection and inhibition of chemokines. Chemokines are a family of small secreted polypeptides that regulate trafficking and effector functions of leukocytes, and play an important role in inflammation and host defence against pathogens (D'Souza & Harden, 1996; Fauci, 1996; Howard er a/., 1996; Murphy, 1996; Premack & Schall, 1996; Baggiolini et al., 1997). More than 30 chemokines have been identified and these are divided into at least three structural groups based on the number and arrangement of conserved cysteines: CC (β) chemokines such as RANTES (for regulation-upon- activation, normal T cell expressed and secreted) and macrophage inflammatory protein (MIP)-1α, CXC ( ) chemokines such as interleukin-8 (IL-8) and growth-related oncogene (GRO)-α, and the C chemokine lymphotactin. The different chemokines have evolved to function with particular cell types: many CC chemokines are chemoattractants for monocytes or thymocytes, while many but not all CXC chemokines are chemoattractants for neutrophils. However, there is no rule relating chemokine structure and cellular specificity to other leukocyte subtypes. For example, the C chemokine lymphotactin is selective for T cells, the CC chemokine eotaxin is specific for eosinophils and the CXC chemokines IFN-γ-induced protein (IP-10) and monokine induced by IFN-γ (Mig) attract activated T cells. Chemokine receptors (CKRs) are seven transmembrane domain proteins and are coupled to G proteins for signal transduction. Most CXC chemokines have high affinity for only a single CKR (IL-8 is an exception in binding to CXCR1 and CXCR2), whereas most CC chemokines bind to more than one CKR (Baggiolini er al., 1997). The activity of chemokines is tightly regulated to prevent excessive inflammation that can cause disease. Inhibition of chemokines by neutralising antibodies in animal models (Sekido et al., 1993) or disruption of mouse chemokine genes (Cook et al., 1995) have confirmed a critical role of chemokines in vivo in inflammation mediated by virus infection or other processes. The production of soluble versions of cytokine receptors containing only the extracellular binding domain, represents a physiological and therapeutic strategy to blockade the activity of some cytokines (Rose-John & Heinrich, 1994). However, the seven transmembrane domain structure of CKRs makes the construction of soluble, inhibitory CKRs difficult, and thus mutated chemokine antagonists, blocking peptides or antibodies are alternative inhibitors of chemokines under evaluation (D'Souza & Harden, 1996; Howard et al., 1996). CKRs play a critical role in transmission and dissemination of HIV by acting as a cofactor which is required together with CD4 for virus entry and infection (D'Souza & Harden, 1996; Fauci, 1996). The CXCR4 CKR is a cofactor for T cell line-tropic HIV isolates, whereas the CCR5 (and CCR3) CKRs are involved in infection by macrophage-tropic HIV strains. The importance of CCR5 in vivo is supported by the finding that individuals who are homozygous for a mutant version of the CCR5 gene are resistant to HIV infection. Binding of chemokines or mutated chemokine antagonists to CKRs block HIV infection, illustrating the potential of the blockade of HIV-CKR interaction as a preventive and therapeutic strategy against HIV (D'Souza & Harden, 1996; Fauci, 1996). Poxviruses are a group of large DNA viruses that replicate in the cytoplasm of the cell and encode many of their own enzymes for transcription and DNA replication (Moss, 1996). Vaccinia virus (W) is the most intensively studied poxvirus and is famous as the live vaccine that was used to eradicate smallpox (Fenner et al., 1988). Since 1982 W has also been widely used as an expression vector and in vaccine research (Moss, 1991). The genome of W strain Copenhagen has been completely sequenced and contains approximately 200 genes (Goebel et al., 1990). Those near the centre of the genome are mostly highly conserved between poxviruses and many are essential for virus replication. In contrast, genes located towards either end of the genome are more variable between different viruses and are frequently non- essential for virus replication (Johnson et al., 1993). A subset of these non-essential virus genes are important for blocking specific components of the host immune system and many affect virus virulence. Thus W and other poxviruses express proteins that are able to block the action of interferons, complement, cytokines, chemokines, inflammation and fever (Alcamϊ & Smith, 1995a; McFadden et al., 1995; Smith, 1996; Spriggs, 1996; Smith et al., 1997c). Many of these proteins are secreted from the infected cell and bind to host factors in solution or at the cell surface. In many cases there is amino acid similarity between the virus protein and the extracellular ligand-binding domain of a cell surface receptor for a particular ligand. In these cases it seems likely that the virus gene has been derived from the host during evolution. Soluble chemokine-binding proteins have been previously detected in poxviruses. Firstly, the myxoma virus T7 protein, which was first identified as a soluble IFN-γR (Upton et al., 1992), binds to a range of chemokines through the heparin-binding domain and affects the infiltration of cells into infected tissue (Mossman et. al., 1996; Lalani et al., 1997). The protein is described in WO 96/33730, designated CBP-1. In contrast, the IFN-γR from orthopoxviruses such as W does not bind chemokines. (Alcami et al., 1998). Secondly, it was demonstrated that W strain Lister expresses a soluble 35 kDa protein that is secreted from infected cells and which binds many CC chemokines (Graham et al., 1997; Smith et al., 1997a; Smith er a/., 1997b; Alcamϊ er a/., 1998), but not CXC chemokines, through a domain distinct from the heparin-binding domain (Smith et al., 1997a; Smith er a/., 1997b; Alcami er a/., 1998). This protein has been called vCKBP (Alcami et al., 1998). The protein is also described in WO 97/11714, as p35. Very similar proteins are made by some but not all W strains, cowpox virus, the leporipoxviruses, Shope fibroma virus (SFV) and myxoma virus (called T1 protein), and by variola major viruses e.g. protein G5R in India-1967 (Shchelkunov ef a/., 1994). Another W gene encodes a protein more distantly related to vCKBP. In W strain Copenhagen this was called A41 L (Goebel er a/., 1990), and in W strain WR it was originally named SalF4L (Howard et al., 1991) but renamed SalF3L (Smith et al., 1991). Hereafter it is referred to as A41 L. The relatedness of A41 L and SFV T1 , including the co-alignment of 8 cysteine residues was noted (Howard et al., 1991). Howard et al., 1991 also noted a potential site for attachment of carbohydrate via an asparagine residue and a putative signal peptide that might translocate the protein across the endoplasmic reticulum membrane and out of the cell. Other authors claimed there was no similarity between A41 L and the 35 kDa protein of W Lister and SFV T1 protein (Martinez-Pomares et al., 1995). In all three strains of variola major virus that have been sequenced there is an open reading frame (ORF) with more than 95% amino acid identity to the W WR A41 L protein termed 16L in strain Harvey (Aguado et al., 1992), A44L in strain Bangladesh-1975 (Massung er a/., 1994) and A46L in strain India-1967 (Shchelkunov ef al., 1994). The similarity of A41 L to vCKBP suggested that the A41 L protein might bind chemokines as for vCKBP (Alcami et al., 1998). However Alcami et al., (1998) reported the supematants of cells infected with W WR or W Lister from which the gene encoding the 35 kDa protein had been deleted (Patel et al., 1990), did not contain a protein that could be crosslinked to MIP-1α, RANTES, IL-8 or GRO-α (Alcami et al., 1998). It has now been discovered that gene A41 L encodes a 30 kDa protein that is secreted from cells infected by all strains of orthopoxvirus examined including 16 strains of W and 2 strains of cowpox virus. In addition it is predicted to be expressed from all 3 strains of variola major virus for which sequence data are available (Aguado et al., 1992; Massung et al., 1994; Shchelkunov, 1995). The protein contains O- and N-linked carbohydrate. A W WR deletion mutant lacking the A41 L gene was constructed and shown to replicate in cell culture to the same titre as wild type and revertant viruses. Using A41 L protein made by recombinant baculovirus in surface plasmon resonance (BIAcore), the protein was found to bind the CXC chemokines Mig and IP-10, but not other CXC, CC or C chemokines. The invention provides in one aspect a medicament comprising an effective amount of an A41 L protein or a chemokine-binding fragment thereof, together with a pharmaceutically acceptable carrier. The invention is concerned in particular with the use of an A41L protein or a chemokine-binding fragment thereof as an anti- inflammatory agent. The A41 L protein and fragments will be useful for the treatment of conditions mediated by chemokines, in particular CXC chemokines and IFN-γ-induced chemokines such as Mig and IP-10. The invention is also concerned with the use of an A41 L protein or a chemokine-binding fragment as an anti-viral agent. The A41 L protein or fragment will inhibit binding to and/or infection of a target cell by pathogens such as HIV which mediate infection of a target cell via a cellular chemokine receptor. The medicaments described herein may be useful for treatment and/or prophylaxis. In another aspect, the invention provides a recombinant poxvirus which is genetically engineered to be incapable of expressing a native A41 L protein. Preferably, the recombinant poxvirus is incapable of expressing a chemokine-binding A41 L protein, for example by deletion of all or a substantial part of the A41 L gene. The recombinant poxvirus may be for example a genetically engineered vaccinia virus. Vaccinia virus MVA, which is currently being developed for use in vaccines, is of particular interest in connection with this aspect of the invention. MVA genetically engineered so as to be incapable of expressing a chemokine- binding A41 L protein has the anticipated advantages of being safer and less immunogenic than its counterpart expressing native A41 L protein. In a further aspect, the invention provides a detection method comprising the steps of: a) providing a chemokine-binding molecule which is an A41 L protein or a chemokine-binding fragment thereof; b) contacting the chemokine-binding molecule with a sample; c) detecting an interaction of the chemokine-binding molecule with a chemokine in the sample. Thus, the invention may be used to detect the presence of one or more chemokines in a biological sample. The chemokine-binding molecule may be usefully immobilised on a solid support. In another aspect, the invention provides a method for inhibiting the activity of one or more chemokines in a sample, which method comprises contacting the sample with an effective amount of a chemokine-binding molecule which is an A41 L protein or a chemokine- binding fragment thereof. In further aspects the invention provides a purified A41 L protein or a chemokine-binding fragment thereof, for use in a method or a medicament as described herein; and a kit comprising such a purified A41 L protein or fragment. An amino acid sequence for the A41 L protein is shown in Figure 1. The sequence shown is for the W WR A41 L protein (accession no. D11079). Also shown for comparison is the amino acid sequence of vCKBP from W Lister (DNA database of Japan, accession no. D00612). The invention is concerned with A41 L proteins (now also referred to as vCKBP-2) from poxviruses including vaccinia viruses and variola major viruses and from any other viral or non-viral source. Viral A41 L proteins may be expected to have about 50% or more amino identity with the A41 L amino acid sequence shown in Figure 1 , or particularly 80% or more, or 90% or more, or 95% or more amino acid identity with the A41 L sequence in Figure 1. Cellular homoiogues of the A41 L protein which have the same or similar chemokine-binding capability may be expected to have a far lower amino acid identity with the sequence shown in Figure 1 , for example about 25%. A41 L proteins from different organisms may also be identified by the following shared characteristics: - conserved cysteine residues in the amino acid sequence which form intramolecular disulphide bonds, chemokine-binding properties, a similar size. amino acid identity/similarity. Amino acid similarity means amino acid residues having similar properties such as charge and hydrophobicity; where one amino acid may be conservatively substituted (that is without significant effect on the structure of the protein) for another, there is "similarity" between the two. acidity; the proteins are all reasonably acidic. This ties in with their function since chemokines tend to be basic proteins. The isoelectric point of the A41 L protein from W WR is 5.4. The A41 L proteins for use in the invention may be provided in native or in mutant form. Known methods, in particular genetic manipulation techniques, can be used to provide modified versions of the protein which have altered characteristics compared to the native protein. Desirable altered characteristics may be for example an altered binding capability to enhance binding to the chemokines. The invention also envisages the use of fragments of the A41 L protein, which fragments have chemokine-binding properties. The fragments may be peptides derived from the protein. Use of such peptides can be preferable to the use of an entire protein or a substantial part of a protein, for example because of the reduced immunogenicity of a peptide compared to a protein. Such peptides may be prepared by a variety of techniques including recombinant DNA techniques and synthetic chemical methods. It will also be evident that the A41 L proteins for use in the invention may be prepared in a variety of ways, in particular as recombinant proteins in a variety of expression systems. Such expression systems include for example poxvirus or non-poxvirus expression systems. Any standard systems may be used such as baculovirus expression systems or mammalian cell line expression systems. Figure 1 shows an alignment of the W WR A41 L protein with vCKBP of W Lister. Figure 2 shows hydropathy profiles for A41 L from W strain WR and vCKBP of W strain Lister. Figure 3 shows analysis of vΔA41L and wild type and revertant viruses. Figure 4 shows the presence of recombinant A41 L protein in supernatants from cells infected with baculovirus expressing A41 L. Figure 5 shows the presence of A41 L in supernatants of virus-infected cells. Figure 6 shows the presence of proteins recognised by anti- A41 L antibody in supernatants of cells infected by various poxviruses. Figure 7 shows binding profiles for A41 L and vCKBP with a variety of chemokines. Figure 8 shows the nucleotide sequence of the W strain WR A41 L gene and flanking sequences. The invention will now be further described in the Examples which follow, which are intended to illustrate the invention and not to limit the scope of the invention in any way. EXAMPLES Materials and Methods Cells and viruses The orthopoxvirus strains used in this study are described elsewhere (Alcamϊ & Smith 1995b; Alcami et al., 1998). The W strain WR was grown in BS-C-1 cells in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% foetal bovine serum (FBS) and was titrated on these cells as described previously (Mackett et al., 1985). D980R and CV-1 cells were grown in DMEM containing 10% FBS. Chemokines Recombinant human chemokines IL-8, neutrophil activating protein (NAP)-2, GRO-α, platelet factor (PF) 4, stromal-derived factor (SDF)-1α, epithelial neutrophil activating protein (ENA)-78, Mig, IP-10, RANTES, MIP-1α, MCP-1 , MCP-2, eotaxin and lymphotactin were purchased from PeproTech, GRO-γ and I-309 were purchased from R&D Systems, and the anaphylatoxin C5a was purchased from Sigma. Construction of VV A41L deletion and revertant viruses A plasmid suitable for the construction of a W strain WR mutant lacking the A41 L gene by transient dominant selection (Falkner & Moss, 1990) was assembled by polymerase chain reaction (PCR) and DNA cloning. Oligonucleotides that flanked the left or right side of the A41 L gene were used to generate PCR products that contained terminal Hind\\\ and SamHI (left flank) or BambH and EcoRI (right flank) restriction enzyme sites. These PCR fragments were then digested at their termini with the appropriate restriction enzymes and cloned sequentially into plasmid pSJH7 cut with the same enzymes (Hughes et al., 1991) to form a plasmid pΔA41 L . This plasmid lacked 90% of the A41 L ORF (codons 1- 201) and contained the Escherichia coli guanylphosphoribosyl transferase gene (Ecogpt) (Boyle & Coupar, 1988) under the control of the W p7.5K promoter (Mackett & Smith, 1982) distal to the sequences surrounding the A41 L gene. The fidelity of the sequence of the PCR-derived regions of the plasmid was confirmed by DNA sequencing using an Applied Biosystems Inc. 373 fluorescent automated DNA sequencer. Plasmid pΔA41L was then transfected into CV-1 cells that had been infected with W strain WR at 0.05 plaque forming units (pfu)/cell. Two days later the virus present in the cells was harvested, diluted and used to infect monolayers of BS-C-1 cells in the presence of mycophenolic acid (MPA), xanthine and hypoxanthine as described (Falkner & Moss, 1988). Plaques formed in the presence of MPA represented viruses expressing Ecogpt due to integration of plasmid pΔA41 L by a single crossover recombination event. After an additional plaque purification on BS-C-1 cells in the presence of MPA, MPA-resistant virus isolates were used to infect monolayers of D980R cells in the presence of 6-thioguanine (6-TG) as described (Kerr & Smith, 1991). Plaques formed represented virus isolates from which the Ecogpt cassette and plasmid sequences had been lost by recombination and were either wild type or A41 L deletion mutant (ΔA41 L). These were distinguished by PCR using oligonucleotides flanking the A41 L gene. A plaque purified wild type virus (vA41 L) and a deletion mutant (vΔA41L) derived from the same MPA-resistant intermediate virus were plaque purified twice more and then amplified and purified as described previously (Mackett er a/., 1985). A revertant virus in which the A41 L gene was re-inserted into VΔA41 L was constructed by transient dominant selection (Falkner & Moss, 1990) using plasmid pA41 L. This plasmid contained the complete A41 L gene and flanking sequences cloned between the Sa/I and EcoRI sites of plasmid pSJH7. pA41 L was transfected into vΔA41 L-infected CV-1 cells and MPA-resistant virus was isolated as described above. Such a virus was then plated onto D980R cells in the presence of 6-TG and 6-TG- resistant viruses were screened for a wild type A41 L genotype by PCR (as above). After further plaque purification this virus was amplified, purified and called vA41 L-rev. Genome analysis of virus isolates Viruses vA41 L, vΔA41 L and vA41 L-rev were grown in BS-C- 1 cells and DNA was extracted from purified virus cores as described previously (Esposito et al., 1981). These DNA samples were then analysed by PCR and Southern blotting (Southern, 1975). PCR analysis used oligonucleotides flanking the A41L locus to distinguish between wild type and mutant A41 L alleles. For Southern blot analyses virus DNA was digested with EcoRV, electrophoresed on a 0.8% agarose gel and transferred to nylon filters (Hybond-N, Amersham). Filters were hybridised with fluorescein-labelled DNA probes derived from either within the region of A41 L deleted from vΔA41 L or from a region extending from the 5' end of the gene into the left flanking region. Bound probes were detected with peroxidase-conjugated anti-fluorescein antibodies and enhanced chemiluminescence (ECL) reagents (Amersham). Expression and purification of A41L protein from recombinant baculovirus The A41 L ORF was amplified by PCR using oligonucleotides that introduced restriction enzyme sites H/ ' ndlll and Xho\ at the 5' and 3' of the ORF, respectively. The DNA fragment was digested with the same enzymes and cloned into H/ndlll and Xhol-cut pBAC-1 (R&D Systems) generating plasmid pAcA41 Lhis so that the A41 L ORF was downstream of the Autographa californica nuclear polyhedrosis virus (AcNPV) polyhedron gene promoter and linked to 6 histidine residues at the C terminus. Plasmid pAcA41 Lhis was used to construct recombinant baculoviruses as described (Alcamϊ & Smith 1992; Alcami et ai, 1998). Spodoptera frugiperda (Sf)21 cells were cotransfected with purified linear AcNPV DNA (BacPAK6, Clontech) and pAcA41 Lhis according to the manufacturer's instructions and recombinant virus AcA41 Lhis was isolated. A high titre stock (1θ8 pfu/ml) of AcA41 Lhis was generated from the working stock and was used to infect Sf21 cells (seeded onto plastic flasks at 2x10 5 cells/cm 2 ) at 10 pfu/cell in TC100 medium with 10% FBS. After 3 h the virus inoculum was removed, the cells were washed and overlayed with serum-free TC100. After 60 h, the supernatant was collected, centrifuged at 2,000 rpm (GH-3.7 rotor in a Beckman GPR centrifuge) for 5 min at 4 C to remove cellular debris, filtered through a 0.2 μm filter (Nalgene) and then centrifuged at 20,000 rpm (SW28 rotor in a Beckman L8-M ultracentrifuge) for 30 min at 4 C to pellet virus particles. The supernatant was collected, dialysed against 20 mM Tris-HCI (pH 7.9) in 500 mM NaCI, and purified by Ni 2+ chelate affinity chromatography. Nitrilotriacetic acid (NTA) resin pre-charged with Ni 2+ (Qiagen) was equilibrated in binding buffer (20 mM Tris-HCI pH 7.9, 0.5 M NaCI, 5 mM imidazole), before being mixed with the supernatant. The slurry was rotated continuously for 3 h, washed with 50 ml of binding buffer followed by 50 ml of 20 mM imidazole in binding buffer and then poured into a column. The column was further washed (at a flow rate of 0.2 ml/min) with binding buffer containing increasing concentration of imidazole up to 50 mM, before eluting the bound A41 Lhis protein with 120 mM imidazole. Aliquots of the fractions were analysed by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) (Laemmli, 1970) on 10% gels and visualised by staining with Coomassie blue. The fractions containing the eluted A41 Lhis protein were pooled, dialysed into 50 mM Tris-HCI pH 7.0, 20 mM NaCI to remove imidazole and to prepare the sample for further purification and concentration by fast protein liquid chromatography (FPLC) using a mono-Q anion exchanger (Pharmacia). A41 Lhis has a predicted isoelectric (pi) point of 5.4 and so readily bound to mono-Q at pH 7.0 and was eluted at 400 mM NaCI during washing of the column with a 10 ml gradient of 20 mM to 1 M NaCI. The protein concentration in fractions was determined by Bradford assay and by comparisons with known concentrations of BSA standards on SDS-PAGE. Immunisation of rabbit to produce an A41 monospecific antibody New Zealand white rabbits were injected intramuscularly with 80 μg of purified A41 Lhis protein emulsified with an equal volume of Freund's complete adjuvant and boosted 3 times at 3 week intervals with 200 μg of the same antigen emulsified in Freund's incomplete adjuvant. Pre-immune and immune serum samples were taken prior to immunisation and 2 weeks after the final immunisation. Immunoblotting BS-C-1 cells were infected with the indicated orthopoxviruses at 10 pfu/cell for 1.5 h at 37 C, and after washing away unbound virus, the cells were incubated for 16 h in minimal essential medium (MEM) without serum. Supernatants from infected cells were then prepared as described previously (Alcamϊ & Smith, 1995b). Alternatively, Sf21 cells were infected with AcNPV or AcA41 Lhis at 10 pfu/cell and 3 days later the supernatants were harvested and clarified by centrifugation (2,000 x g, 10 min at 4 C). All samples were resolved by SDS-PAGE on 10% gels. After electrophoretic transfer of proteins to nitrocellulose membranes (Towbin et al., 1979) the blots were incubated sequentially with rabbit anti-A41 L serum (diluted 1 :2000), a goat anti-rabbit peroxidase-conjugate, and ECL reagents (Amersham) as described previously (Parkinson & Smith, 1994) and as directed by the manufacturer. Surface plasmon resonance (BIAcore analysis) The carboxymethylated dextran surface of a BIAcore sensor chip CM5 was activated with 35 μl of 50 mM N-hydroxysuccinimide (NHS) and 200 mM N-ethyl-N'-(3-dimethylaminopropyl)carbodiimide hydrochloride (EDC) at a flow rate of 5 μl/min over the chip, through three of the four flow cells. Coupling of proteins onto the activated chip surface was achieved by passing 35 μl of purified, baculovirus-expressed A41Lhis (10 ng/μl) and 35Khis (10 ng/μl) (Alcamϊ et al., 1998) in 15 mM acetate pH 4.0 through flowcells 3 and 4 respectively, at a flow rate of 5 μl/min. This was followed by passing 35 μl of 1 M ethanolamine hydrochloride-NaOH pH 8.5 at a flow rate of 5 μl/min through the three NHS/EDC-activated flowcells, to deactivate the chip surface. Various recombinant chemoattractant molecules (e.g. anaphylatoxin C5a, and chemokines from the CXC, CC and C families) were passed across a CM5 sensor chip surface at a concentration of 1 μM in HEPES buffered saline (HBS) (10 mM HEPES, 150 mM NaCI, 3 mM EDTA) containing 0.005% Tween-20, at a flow rate of 5 μl/min over flowcells with or without A41 His or 35KHis coupled to the chip surface. A positive interaction of the chemoattractant molecules (analyte) with the surface-coupled proteins (ligand) was indicated by an increase in the final base line (in response units) after the injected analyte had been eluted from the flowcells. After each injection of analyte, the sensor chip surface was regenerated with a 5 μl pulse of 0.1 M HCI at a flow rate of 5 μl/min, to strip the bound analyte off the ligand coupled to the chip surface, in order to prepare the chip surface for the next chemoattractant molecule to be injected. Histological examination of VV-induced lesions in a rabbit skin model Ws vA41 L, vΔA41 L and vA41 L-rev were diluted in PBS and were injected sub-cutaneously with 10^, 10^ or 10^ pfu per site, along the left and right flanks of a female New Zealand White rabbit (weighing 1.5 kg) which was sacrificed 3 days post injection. The titres of the viruses used for infection were confirmed by plaque assays. Biopsy tissue samples from lesions which developed at the sites of injection, were frozen using O.C.T. Tissue-Tek (Bayer Diagnostics) in isopentane bath over dry ice for cryosectioning. The cryosections (10 μm thick) were placed on glass slides (Horwell Superfrost), fixed in 2% (w/v) paraformaldehyde on ice and subjected to membrane permeabilisation with 0.1% Triton-X 100 in PBS, quenching at 37 C for 5 mins to remove endogenous peroxidase using glucose oxidase (0.5 units/ml) in 0.1 M phosphate buffer (pH 7.4) containing 0.2% (w/v) glucose and 1 mM sodium azide, three washes (for 5 mins) with PBS (containing 0.1% Triton), and blocking for 30 mins with 5% normal horse serum (Sigma). The sections were then either immunostained with mouse anti- rabbit CD43 antibody (Serotec) at 1 :100 dilution in 5% normal horse serum (for 1 h) to detect infiltrating leukocytes (particularly T lymphocytes, monocytes and macrophages) or mouse anti- 14k monoclonal antibody (MAb 5B4/2F2) (Czerny & Mahnel, 1990) at 1 :1000 dilution (for 1 h), for the presence of W in the sections. The sections were washed (3 times) in PBS with 0.1 % Triton, followed by incubation with 1 :100-diluted biotinylated horse anti-mouse secondary antibody (Vector Laboratories) for 30 mins, washed as before and then treated for 30 mins with Vectastain Elite ABC Reagent (Vector Laboratories). After 2 washes for 5 mins, immunostained sections was visualised using the chromogenic substrate, diaminobenzidine tetrahydrochloride (DAB) (Sigma) at a concentration of 0.5 mg/ml in 10 mM imidazole, which produces a reddish brown precipitate, followed by 2 further washes (as above) and another with PBS. The sections were counterstained with cresyl violet acetate (1 %), dehydrated through increasing concentrations of 70%, 80%, 95%, and absolute ethanol, and mounted with coverslips using DPX (BDH Merck). Histological examination of these sections was done under bright field illumination using a Zeiss Axiophot photomicroscope. Results The A41L protein is related to the T1/35 kDa protein family The A41 L gene was predicted to encode a 25 kDa protein with a 219 amino acid residues (Goebel et al., 1990; Howard et al., 1991). Computational analyses had revealed this protein was related to SFV T1 protein (Howard et al., 1991). The A41 L gene product also shares 25% amino acid identity with the recently described chemokine-binding protein, vCKBP, expressed by orthopoxviruses and various W strains including Lister but not WR (Graham et al., 1997; Smith et al., 1997a; Alcamϊ et al., 1998). This similarity is illustrated further in Fig. 1 by the alignment of the W WR A41 L protein with vCKBP of W Lister (Patel et al., 1990). A41 L is also related to the G5R protein from variola virus strain Bangladesh-1975 (Massung et al., 1994) and the SFV T1 protein (Upton et al., 1987). The A41 L protein of W strain WR shares 97.7% amino acid identity with the A41 L protein of W strain Copenhagen (Goebel et al., 1990), and 96.3% identity with the 16L protein of variola virus strain Harvey (Aguado et al., 1992), and similar degrees of relatedness with protein A44L from variola virus strain Bangladesh-1975 (Massung et al., 1994) and protein A46L from variola virus strain India-1967 (Shchelkunov et al., 1994). Note the conservation of eight cysteine residues and the similar length of these proteins. Both the A41 L gene product and vCKBP do not have significant similarities with other non-viral protein sequences in databases. The relationship between the W A41 L protein and vCKBP is also illustrated by the similar hydropathy profiles of the two proteins (Fig. 2) and their acidic nature, pi 5.4 for A41 L and 4.3 for vCKBP. The A41L gene is non-essential for virus replication in cell culture Sequence analysis of the genomes of variola virus strains Harvey, India-1967 and Bangladesh-1975 and W strains Copenhagen and WR showed that a protein equivalent to W WR A41 L protein is present in each virus and is highly conserved. This suggested that the protein might have an important function for the virus. To explore this further we attempted to make a W deletion mutant lacking the A41 L gene. Because the A41 L protein is related to vCKBP of W Lister and some other W strains (Alcami et al., 1998) it was possible that vCKBP might compensate functionally for loss of the A41 L gene. To avoid this possible complication, W strain WR was selected because it does not express vCKBP. Despite the conservation of A41 L, a viable deletion mutant was isolated. Analysis of the genomes of vΔA41 L and wild type (vA41 L) and revertant (vA41 L-rev) viruses indicated that they had the predicted genome structures (Fig. 3). EcoRV-digested DNA from uncloned WR virus, vA41 L and vA41 L-rev gave fragments of 1991 bp that were detected with a probe extending from the 5' region of the gene into the left flanking sequences and by a probe from near the 3' end of the gene within the region deleted from VΔA41 L. As expected, this 3' probe did not detect any fragment in vΔA41 L and the 5' probe detected a smaller fragment of 1391 bp, consistent with the loss of the majority of the A41 L ORF. PCR analysis using oligonucleotides flanking the ORF detected fragments of indistinguishable size in WR, vA41 L and vA41 L-rev viruses and a fragment 600 nucleotides smaller for vΔA41 L (data not shown). The growth of vA41 L, vΔA41 L and vA41 L-rev viruses were equivalent in cell culture. The plaques formed on BS-C-1 cells by each virus were the same size and the yields of intracellular virus produced 24 h postinfection (hpi) of BS-C-1 cells at 1 pfu/cell was indistinguishable for each virus (data not shown). Expression and purification of the A41L protein To demonstrate expression of the A41 L protein from baculovirus, proteins in the supernatants of AcA41Lhis-infected Sf21 cells were analysed by immunoblotting with a monoclonal antibody against the His(6) tag (Clontech) (Fig. 4a). This antibody detected a 30 kDa protein made by AcA41 Lhis but not by AcNPV confirming that the A41L protein was expressed and secreted from baculovirus-infected cells. The A41Lhis protein was purified from baculovirus-infected Sf21 cell supernatants by nickel affinity chromatography (Fig. 4b). A41 Lhis was detected as the predominant protein in cell supernatants by staining with Coomassie blue. The A41 Lhis protein was removed selectively by passage of the clarified supernatant through the nickel column. The bound A41 Lhis protein was eluted from the column in increasing concentrations of imidazole with the majority of A41 Lhis protein eluting in 60 mM imidazole. The eluted protein was further purified by anion exchange chromatography using a mono-Q column and FPLC. The purified protein obtained appeared homogeneous (data not shown) and was used for immunisation of rabbits and for BIAcore 2000 surface plasmon resonance analysis as described in Materials and Methods. The A41L protein is secreted from VV-infected cells. To identify and characterise the W A41 L protein an antibody was produced by immunisation of rabbits with the purified A41 Lhis protein and used in immunoblotting to detect the A41 L protein made from W-infected cells (Fig. 4). A 30 kDa protein was detected in the supernatant of cells infected with WR, vA41 L, and vA41 L-rev but not vΔA41 L (Fig. 5a). To determine when during infection the protein was produced, supernatants were taken at different times postinfection or after infection in the presence of cytosine arabinoside (araC), an inhibitor of virus DNA replication and therefore of intermediate and late protein synthesis (Fig. 5b). The A41 L protein was detected as early as 2 hpi and in the presence of araC, indicating that it was expressed early. However, the protein was also expressed late during infection as the levels continued to increase up to 16 hpi. This early and late expression parallels that of vCKBP which is expressed from the early/late p7.5 promoter that has been widely used in poxvirus expression vectors (Smith, 1991). The A41 L protein had a decreased size when synthesised in the presence of either tunicamycin or monensin and therefore contains both N- and O-linked carbohydrate (Fig. 5c). The A41L protein is conserved in orthopoxviruses. The DNA sequence data on orthopoxvirus genomes indicated that the A41 L gene is highly conserved. This was examined further by immunoblotting with supernatants from cells infected with 16 strains of W and 2 strains of cowpox virus (Fig. 6). The data show that all these viruses express a protein of similar size, but at variable levels, that is recognised by the anti- A41 L antibody. The A41L protein binds CXC chemokines Mig and IP-10. The similarity of the A41 L protein to vCKBP suggested that, like vCKBP, it might bind chemokines. However, supernatants from W WR-infected cells were shown not to contain a protein that bound the human CC chemokines MIP- 1α or RANTES, or the human CXC chemokines GRO-α and IL-8. To determine if the A41 L protein bound to other chemokines that were not included in that study, the purified A41Lhis and 35Khis (vCKBP) proteins were chemically cross-linked via EDC onto an NHS-activated carboxymethylated cellulose CM5 biosensor chip in separate flow cells of the BIAcore 2000 system (Pharmacia). The chip surface was then deactivated using ethanolamine hydrochloride to remove unbound proteins. Various recombinant human chemoattractant proteins (including 6 CC chemokines, 8 CXC chemokines, the C chemokine lymphotactin and the complement C5a anaphylatoxin) were sequentially passed across the chip surface in all flow cells. Hydrochloric acid (0.1 M) was used to regenerate the chip surface after each chemoattractant protein was passed across. As expected the CC chemokines MIP-1α and MCP-1 gave positive signals with vCKBP compared to A41 L or control (Fig. 7b) confirming they were bound by vCKBP but not by A41 L. With the CXC chemokines IL-8 and NAP-2 no specific binding was observed to either vCKBP or A41 L, but both Mig and IP-10 bound specifically to A41 L (Fig. 7a). All other chemokines tested NAP-2, GRO-α,GRO-γ, PF4, SDF-1α, ENA-78, RANTES, MCP-2, eotaxin, I-309, lymphotactin, and the anaphylatoxin C5a were not bound by A41 L (data not shown). The A41L protein inhibits infiltration of cells into infected rabbit skin To determine if the A41 L protein could influence the host response to infection with W, viruses vA41 L, VΔA41L and vA41 L-rev (10 4 pfu) injected subcutaneously into rabbit skin and the lesions examined 3 days later. There were distinct differences in cellular infiltration and viral antigen between lesions induced by the virus (vΔA41 L) not expressing A41 L and those expressing A41 L (vA41 L and vA41 L-rev). Immunostaining of lesions infected with VΔA41 L using anti-rabbit CD43 antibody, revealed intense infiltration of CD43 + cells (stained reddish brown), in the lower vascular regions of the skin, as compared to that of vA41 L and vA41 L-rev, which exhibited few infiltrating cells. The amount of W antigen present in the dermis and epidermis, as revealed by immunostaining with the anti-14k monoclonal antibody, was more extensive (stained reddish brown) in lesions caused by vA41 L and vA41 L- rev than that of vΔA41 L. This demonstrates that the A41 L protein could down-modulate the infiltration of monocytes, macrophages and T lymphocytes during an anti-viral immune response in vivo (presumably by binding and inhibiting IP-10 and Mig), and thus enable greater viral dissemination through the skin lesion. This contrasts with the VΔA41 L virus, which displayed reduced viral spread when confronted with immune infiltration. Discussion Here we present a characterisation of the protein encoded by W gene A41 L. This gene product is a secreted glycoprotein of 30 kDa that is expressed by all 18 strains of orthopoxvirus tested and the gene is also highly conserved in three strains of variola virus. Despite its conservation the protein is not required for W replication and spread in cell culture. Nonetheless the A41 L protein binds to the CXC chemokines Mig and IP-10 but not to 15 other CC and CXC chemokines. In this respect it displays a much greater chemokine selectivity than the recently identified vCKBP, with which it shares structural similarity, that binds promiscuously to all CC chemokines tested (Alcami et al., 1998). Hereafter the A41 L protein is called vCKBP-2, the 35 kDa protein of W strain Lister being termed vCKBP-1. IP-10 and Mig represent a sub-group of the CXC chemokines, for review see (Farber, 1997). They are more closely related to each other (37% amino acid identity) than to other CXC chemokines and their expression by keratinocytes, endothelial cells, lymphocytes, monocytes and neutrophils is induced by IFN-γ (Luster & Ravetch, 1987b; Luster & Ravetch, 1987a; Farber, 1993; Cassatella et al., 1997). IP-10 and Mig also differ from other CXC chemokines in that they do not attract neutrophils but instead stimulate migration of monocytes and activated T lymphocytes (Taub et al., 1993). The genes encoding IP-10 and Mig are close together on chromosome 4 at a locus distinct from the cluster of other CXC chemokine genes (Lee & Farber, 1996). Both IP-10 and Mig are bound by a seven transmembrane G-protein-coupled receptor (CXCR3) that exhibits greater selectivity than some other CKRs and specifically recognises IP-10 and Mig, but not other CXC and CC chemokines (Loetscher et al., 1996). CXCR3 also shows selectivity in that it is expressed on T cells only after their activation (Loetscher et al., 1996). This specific expression suggests a selective IFN-γ-dependent recruitment or infiltration of effector T lymphocytes by Mig and IP-10. These chemokines have been implicated in the recruitment of such cells in delayed-type hypersensitivity (DTH) cutaneous lesions in tuberculoid leprosy (Kaplan et al., 1987), in cutaneous Leishmaniasis (Kaplan et al., 1987) and in autoimmune inflammatory diseases such as psoriasis (Gottlieb et al., 1988; Gottlieb, 1990), in which high IP-10 expression levels were detected. Mig and IP-10 are implicated in the recruitment of activated T cells following virus or protozoal infection (Amichay et al., 1996; Asensio & Campbell, 1997; Cheret et al., 1997; Narumi et al., 1997) and in some situations can contribute to pathology e.g. in chronic infection with hepatitis C virus (Narumi et al., 1997). Other conditions in which IP- 10 may play a causative role in disease are in adult respiratory distress syndrome, (Abdullah et al., 1997), Lyme disease (Ebnet et al., 1996), atherosclerosis and restenosis (Wang et al., 1996), breast cancer cell migration, invasion and metastasis (Youngs et al., 1997), cutaneous T cell lymphomas (Sarris et al., 1996) and tubulointerstitial nephritis associated with glomerular disease (Tang et al., 1997). IP-10 and Mig also suppress production of haemopoietic progenitor cells (Schwartz et al., 1997) which might be disadvantageous following bone marrow transplants. As a soluble and selective inhibitor of Mig and IP-10, vCKBP- 2 represents a novel compound that has pharmaceutical importance as a selective reagent to inhibit excessive inflammatory reactions and tissue damage induced by these chemokines. It may be possible to prevent or ameliorate disease induced by these chemokines by administration of vCKBP-2 or molecules derived from it. In addition a study of the structural interactions of vCKBP-2 complexed with Mig and IP-10 may provide valuable information about the interactions of these chemokines with the cellular receptor CXCR3. This information would aid the design of small inhibitors to block the interaction of Mig and IP-10 with CXCR3. Presently it is not easy to achieve these goals by manipulation of CXCR3 because of its membrane association and lack of soluble derivative molecules that retain chemokine-binding activity. The specificity of vCKBP-2 is interesting with regard to the biology of W and other orthopoxviruses expressing this protein. Several orthopoxviruses also express a protein (vCKBP-1) that binds CC chemokines and therefore restricts the recruitment of monocytes and other cells attracted by CC chemokines, such as eosinophils by eotaxin (Graham et al., 1997; Smith et al., 1997a; Alcamϊ et al., 1998). However, they do not express a CXC chemokine-binding protein (other than vCKBP- 2 which is Mig and IP-10 specific) that would inhibit recruitment of neutrophils. This might suggest that the recruitment of activated T cells, monocytes and macrophages is more important for control and clearance of W infection than the recruitment of neutrophils. Alternatively it is possible that W has another mechanism to block the normal function of neutrophils. Here we show that vCKBP-2 influences profoundly the recruitment of inflammatory cells to sites of W infection in rabbit skin and the degree of virus replication and spread as shown by the amount of virus antigen. This is consistent with the observations that W infection does induce Mig and IP-10 expression (Amichay et al., 1996) and that expression of Mig and IP-10 from recombinant W caused a decrease in W virulence (Ramshaw et al., 1997). The removal of the A41 L gene is also likely to increase the immunogenicity and safety of W strains such as W MVA, a safe and immunogenic W strain that is being developed as a recombinant therapeutic vaccine against various cancers and a range of pathogens, including for instance, malaria, human papilloma virus (HPV) and human immunodeficiency virus (HIV). In summary we have identified a novel protein expressed by poxviruses that binds to the CXC chemokines Mig and IP-10 and will therefore interfere with the host response to infection. This molecule, called vCKBP-2, has therapeutic potential as an inhibitor of conditions induced by excessive Mig and IP-10 activity, and of infections induced by pathogens binding to CXCR3. It may be a useful reagent for the detection of these chemokines in kits and the manipulation of the encoding gene may enable the construction of more immunogenic poxvirus based vaccines. References Abdullah, F., Ovadia, P., Feuerstein, G., Neville, L. 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A., Taub, D. D., and Rees, R. C. (1997). Chemokines induce migrational responses in human breast carcinoma cell lines. Int. J. Cancer 1\, 257-266. Figure legends Fig. 1. Alignment of the amino acid sequences of the W WR A41 L protein (Smith et al., 1991), vCKBP from W Lister (Patel et al., 1990) created using the PILEUP and PRETTYPLOT programmes of the Genetics Computer Group Inc. Wisconsin (Devereux et al., 1984). Amino acids in boxes are conserved between both proteins. The 8 conserved cysteine resides after the N-terminal siganl peptide are marked with a dot. Fig. 2. Hydrophobicity plots of W WR A41 L (Smith et al., 1991) and vCKBP proteins (Patel et al., 1990) created with the GCG package (Devereux et al., 1984). The regions between the pairs of vertical lines of vCKBP represent regions absent from the A41 L protein. Fig. 3. Southern blot analysis of recombinant virus genomes. (a) Diagram showing the predicted structures of the virus genomes, the sizes of the EcoRV fragment spanning the A41 L gene for the different viruses and the positions of the two probes used for Southern blotting, (b) Southern blot. Virus DNA was digested with restriction endonuclease EcoRV, run on a 0.8% agarose gel, transferred to nylon filters and probed with fluorescein-Iabelled DNA probes derived from the regions indicated in (a). Bound probes were detected as described in the Materials and Methods. The sizes of the bands in nucleotides that were detected with the two probes are indicated. Fig. 4. Expression and purification of the A41 L protein, (a) Immunoblot. Proteins in the supernatants of AcA41Lhis (clones 1 and 2)- infected Sf21 cells were resolved by SDS-PAGE (10% gel), transferred to nitrocellulose and probed with a rabbit antiserum directed against the A41L protein, (b) Commassie stained gel showing the purification of the A41 Lhis protein by nickel-chelate affinity chromatography. Proteins present in the crude supernatant are compared to proteins present in the flowthrough after application to the nickel column and to proteins eluting in increasing concentrations of imidazole. The sizes of protein molecular mass markers are shown in kDa. Fig. 5. Immunoblots showing a characterisation of the A41 L protein made by W WR. (a) BS-C-1 cells were infected with the indicated viruses at 10 pfu/cell or mock-infected and supernatants prepared 16 hpi. After separation by SDS-PAGE (10% gel) and transfer to nitrocellulose, the blots were incubated with rabbit antiserum raised against the A41L protein and bound antibody detected as described in Materials and Methods, (b) The A41 L protein is made early and late during infection. Cells were infected with WR virus for the indicated length of time or infected in the presence of 40 μg/ml of araC or mock-infected. Supernatants were prepared and analysed as in (a), (c) The A41 L protein contains N- and O-linked carbohydrate. Cells were infected with WR virus in the presence or absence of monensin (1 μM) or tunicamycin (1 μg/ml) for 16 h. Supernatants were prepared and analysed as in (a).The sizes of protein molecular mass markers are indicated in kDa. Fig. 6. The A41 L protein is conserved in orthopoxviruses. BS-C-1 cells were infected with the indicated viruses or mock-infected and supernatants were prepared 16 hpi as described in Materials and Methods. Proteins were analysed by SDS-PAGE (10% gel), transferred to nitrocellulose and probed with the rabbit antiserum against the A41 L protein. Bound antibody was detected as described in Materials and Methods. The sizes of protein molecular mass markers are indicated in kDa. Fig. 7. BIAcore 2000 analysis. Purified A41 Lhis or vCKBP proteins were immobilised in separate flow cells and the binding of the indicated chemokines analysed as described in Materials and Methods. Control represents a third flow cell in which no protein was coupled to the chip surface, a) CXC chemokines. b) CC chemokines. Sensorgrams are shown. Fig. 8. The nucleotide sequence of the W strain WR A41 L gene and flanking sequences (Smith et al., 1991). The coding region of the A41 L gene starts at position 121 and finishes at position 780.

Claims: CLAIMS 1. A medicament comprising an effective amount of an A41 L protein or a chemokine-binding fragment thereof, together with a pharmaceutically acceptable carrier. 2. The medicament according to claim 1 , wherein the A41 L protein or fragment is present as an anti-inflammatory agent. 3. The medicament according to claim 2, wherein the anti- inflammatory agent is capable of binding to at least one chemokine from the CXC group. 4. The medicament according to claim 3, wherein the anti- inflammatory agent is capable of binding to at least one IFN-γ-induced chemokine such as the chemokine Mig or IP-10. 5. The medicament according to claim 3 or claim 4, wherein the anti-inflammatory agent inhibits the activity of the chemokine or chemokines. 6. The medicament according to any one of claims 2 to 5, for the treatment or prophylaxis of conditions mediated by IFN-γ-induced chemokines such as Mig and IP-10. 7. The medicament according to claim 1 , wherein the A41 L protein or fragment is present as an anti-viral agent. 8. The medicament according to claim 7, for the treatment or prophylaxis of infections by pathogens which mediate infection of a target cell via a cellular chemokine receptor. 9. The medicament according to claim 8, wherein the chemokine receptor is a CXC chemokine receptor such as CXCR3. 10. The medicament according to any one of claims 7 to 9, for inhibiting binding to and/or infection of a cellular target by HIV. 11. The medicament according to any one of claims 7 to 10, for use in prophylaxis. 12. The medicament according to any one of claims 1 to 11 , wherein the A41 L is a poxvirus A41 L such as a vaccinia virus A41 L. 13. The medicament according to any one of claims 1 to 12, wherein the A41 L protein or fragment thereof is a recombinant protein or fragment. 14. A recombinant poxvirus which is genetically engineered to be incapable of expressing a native A41 L protein. 15. The recombinant poxvirus according to claim 14, which is incapable of expressing a chemokine-binding A41 L protein. 16. The recombinant poxvirus according to claim 14 or claim 15, which is a genetically engineered vaccinia virus. 17. A medicament comprising the recombinant poxvirus according to any one of claims 14 to 16, together with a pharmaceutically acceptable carrier for use in treatment or prophylaxis. 18. A detection method comprising the steps of: a) providing a chemokine-binding molecule which is an A41 L protein or a chemokine-binding fragment thereof; b) contacting the chemokine-binding molecule with a sample; c) detecting an interaction of the chemokine-binding molecule with a chemokine in the sample. 19. The detection method according to claim 18, for detecting the presence of one or more chemokines in a biological sample. 20. The detection method according to claim 18 or claim 19, for detecting one or more chemokines in the CXC group of chemokines. 21. The detection method according to any one of claims 18 to 20, for detecting at least one IFN-γ-induced chemokine such as Mig or IP- 10. 22. The detection method according to any one of claims 18 to 21 , wherein the chemokine-binding molecule is immobilised on a solid support. 23. A method for inhibiting the activity of one or more chemokines in a sample, which method comprises contacting the sample with an effective amount of a chemokine-binding molecule which is an A41 L protein or a chemokine-binding fragment thereof. 24. A purified A41 L protein or a chemokine-binding fragment thereof, for use in a method or a medicament in any of the preceding claims. 25. A kit comprising a purified A41 L protein or fragment according to claim 24.

Inventors: NG AYLWIN, SMITH GEOFFREY, NG, AYLWIN, SMITH, GEOFFREY
Applicants: ISIS INNOVATION, NG AYLWIN, SMITH GEOFFREY, ISIS INNOVATION LIMITED, NG, AYLWIN, SMITH, GEOFFREY
Application year: 1998
Main classification: C12N15
IPC codes: A61K35, A61K38, A61K48, A61P29, A61P31, C07K14, C12N15, G01N33