HUMAN JTV1 GENE OVERLAPS PMS2 GENE

Abstract: The hPMS2 gene encodes a protein which is involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer (HNPCC). The previously published hPMS2 cDNA sequence lacks an upstream in-frame stop codon preceding the presumptive initiating methionine. To further evaluate the 5' terminus of the hPMS2 coding region, we isolated additional cDNA clones, RT-PCR products, and the corresponding 5' genomic segment of the hPMS2 locus. The hPMS2 gene transcripts were found to have heterogeneous but collinear 5' termini, one of which contained an in-frame termination codon preceding the initiating methionine. In addition, a gene encoding a 34.5 kDa polypeptide was found to transcriptionally initiate within hPMS2 from the opposite strand.

Description: HUMAN JTV1 GENE OVERLAPS PMS2 GENE This invention was partially supported using N.I.H. grants CA35494 and CA62924. Therefore, the U.S. government retains certain rights in the invention. BACKGROUND OF THE INVENTION Hereditary Nonpoiyposis Colon Cancer (HNPCC) is an autosomal dominantly inherited disease characterized by an early onset of colorectal cancer (CRC) (Lynch et.aL, 1993). Virtually all tumors from HNPCC patients and a small fraction of non-hereditary CRC contain numerous alterations in microsatellite sequences throughout their genomes (Ionov et.al., 1993; Thibodeau et.al., 1993; Aaltonen et.al., 1993; Shibata, et.al., 1994). A hereditary defect in mismatch repair is likely to be responsible for both the microsatellite instability and tumor susceptibility in HNPCC patients (Parsons et.al., 1993; Umar, et.ai., 1994). Four genes that participate in mismatch repair (hMSH2, KMLHl, hPMSl, and hPMS2) have been discovered and shown to be mutated in the germ-line of HNPCC patients (Fishel, et.al., 1993; Leach et.aL, 1993; Palombo. et.aL, 1994; Bronner et.al., 1994; Papadopouios et.al., 1994; Nicolaides et.a , 1994). Mismatch repair is initiated with the binding of MutS-related proteins to mismatched basepairs, and continues with the binding of mutL-related proteins to the mutS-DNA complex (reviewed in Modrich, 1995). Other components are then recruited to excise the DNA strand containing the mismatch and replace it with the correct nucieotides. Human mutL-related proteins involved in this pathway have recemly been purified to homogeneity and shown to complement the mismatch repair activity of a human tumor cell line which is deficient in mismatch repair (Li and Modrich, 1994). The complementing activity is present in a heteroduplex that is comprised of a 85 and a 110 kDa protein. Sequence analysis of proteolytic peptides from the 85 kDa protein revealed it to be the product oihMUIl, and this protein's molecular weight agreed with that predicted from the cDNA sequence (Bronner et.al., 1994; Papadopoulos et.al., 1994). The sequence of the peptide generated from the 110 kDa component showed it to be similar to the hPMS2 mutL-homoiog; however, the predicted molecular weight of hPMS2 is only 95 kDa (Nicolaides, et.al., 1994). Since the previously isolated hPMS2 cDNA clones lacked an in-frame termination codon upstream of the presumptive initiating methionine, it was possible that the open reading frame extended further upstream. Thus there is a need in the an for further knowledge of the genetic structures of and adjacent to the known hPMS2 gene. SUMMARY OF THE INVENTION It is an object of the invention to provide a novel, isolated, human gene on chromosome 7. It is an object of the invention to provide vectors and host cells for making a novel human gene product. It is another object of the invention to provide compositions of matter containing the human gene product. These and other objects are provided by one or more of the embodiments described below. In one embodiment of the invention, a segment of cDNA is provided. The cDNA consists of the sequence of nucleotides shown in Figure 2. According to another embodiment of the invention, a vector comprising the segment of cDNA which consists of the sequence of nucleotides shown in Figure 2 is provided, as well as host cells comprising the vector. According to still another embodiment of the invention, a composition is provided. The composition consists essentially of a protein consisting of the amino acid sequence shown in Figure 2. In yet another embodiment of the invention a composition of protein JTV1 as shown in Figure 1 is provided. The composition is free of other human proteins. In another embodiment of the invention a segment of cDNA is provided which segment encodes the amino acid sequence of JTV1 protein shown in Figure 2. cDNA probes are also provided by the present invention. The cDNA portion of said probes consists of between 15 and 1176 contiguous nucleotides of the sequence shown in SEQ ID NO:l. BRIEF DESCRIPTION OF THE DRAWINGS Figure 1 shows the sequence of the 5' region of hPMS2 and predicted coding region. The arrow indicates the 5' end of the previously published cDNA clone. The presumptive initiating methionine is underlined. Figure 2 shows the sequence of JTV1. The sequence has been deposited in Genbank, accession number U24169. The presumptive initiating methionine is underlined. Figure 3 demonstrates the genomic localization of JTVI. The genomic localization oihPMS2 and JTVI were confirmed by screening somatic-cell hybrids containing various regions of human chromosome 7. Lane 1, GM10791 contains entire chromosome 7 in a Chinese hamster ovary (CHO) background; lane 2, NA11440 contains 7pter> 7p22 in a CHO background; lane 3, Ru-Rag4-13 contains 7cen-7pter in a murine background; lane 4, 4AF1/106/K015 contains 7cen-qter in a murine background; lane 5, GM05184.17 contains 7q21.2-qter in a CHO background; lane 6, 2068Rag22-2 contains 7q22-qter in a murine background; lane 7, human genomic DNA; lane 8, mouse genomic DNA; lane 9, CHO genomic DNA. Figure 4 demonstrates the mapping of transcriptional start sites of hPMS2 and JTVI. Sequence of the genomic region containing the 5' ends of the two genes is shown. The sequence is numbered in respect to codon 1 of hPMS2. Lower case letters denote inrronic sequence of JTVI (from nt -479 to -833) and hPMS2 (from +24 to + 108). Arrows indicate the 5' ends of hPMS2 (sense strand) and of JTVI (antisense strand) cDNA clones. The underlined ATG codons indicate the predicted initiating methionines for hPMS2 (at nt + 1 on the sense - A . strand) and JTVI (at nt -345 on the antisense strand). The sequence has been deposited in Genbank, accession number U24168. Figure 5 shows the expression of hPMS2 and JTVI. RNA from various tissues was incubated with reverse transcriptase (RT+) or in control reactions without reverse transcriptase (RT-). The cDNA was used as template for PCR with primers specific for hPMS2 (A) and JTVI (B). RT-PCR products were separated by polyacrylamide gel electrophoresis. DETADLED DESCRIPTION OF THE PREFERRED EMBODIMENTS To investigate the upstream region from hPMS2, we isolated additional cDNA clones, analyzed the 5' end of hPMS2 transcripts with PCR-based techniques, and cloned the corresponding genomic segments. In addition to clarifying the transcript, we serendipitously discovered a previously undescribed gene overlapping hPMS2. That gene is termed herein JTVI. The sequences of the JTVI cDNA and protein are shown in SEQ ID NOS:l and 2, respectively. A segment of cDNA according to the present invention refers to a contiguous stretch of deoxyribonucleotides which have a sequence as obtained upon reverse transcriptase of an RNA transcript. Such segments do not contain introns. The segment may be an isolated molecule or it can be covalently joined to other nucleic acid sequences. The segment may, for example, be replicated as part of a vector, such as a plasmid, virus, or minichromosome. The vector may be replicated within a host cell, such as a cell transformed by a recombinant DNA molecule. The host cell may be used to produce JTVI protein. It can also be used to study regulation of expression of JTVI sequences, for example by subjecting the host cell to various agents which may or may not affect the expression. Although the DNA sequence is discussed with particularity herein, it is well within the skill of the an to make small mutations, such as single nucleic acid substitutions of one of the other three nucleic acid bases, at any of the positions of the sequence. In addition, it is well within the an to make single base deletions or single base insertions, to study the effect upon protein structure and function. If JTVI is produced in a recombinant host cell which is not human, a composition of JTVI protein will be produced which is free of other human proteins. If JTVI protein is isolated from naturally producing cells, or from human host cells, then the protein can be purified, for example, using antibodies which are raised against an immunogen comprising JTVI amino acid sequence. Any other means of purification known in the an can be used, as is desired. DNA molecules can be made having different nucleotide sequences from that disclosed in SEQ ID NO:l, but which still encode the JTVI protein as disclosed in SEQ ID NO:2. Using the known coding relationships between codons and amino acids and the disclosed amino acid sequence, numerous other sequences can be readily designed and produced. Such DNA molecules are within the contemplation of the subject invention. cDNA probes can be used for hybridization studies. Typically they are labeled with a detectable marker, such as a radiolabel or a fluorescent moiety, although they need not be. The cDNA probes of the subject invention consist of at least 15 contiguous nucleotides of the sequence shown in SEQ ID NO:l. If greater specificity is desired, larger molecules of 18, 20, 25, or 30 nucleotides can be used, up to a maximum of the entire sequence of 1176 nucleotides. JTVI cDNAs can be used as probes to detect deletions in chromosome 7. Due to the overlapping promoter regions, large deletions oi JTVI would also be expected to affect PMS2 expression, leading to Hereditary Non-Polyposis Colorectal Cancer (HNPCC). JTVI cDNA can be used in chromosome mapping. It can also be used to assay activity or competence of the PMS2 promoter region. The presence of JTVI transcripts or JTVI protein suggests that the PMS2 promoter is intact. If the PMS2 promoter is intact and PMS2 products are absent, a structural defect in the coding region is indicated. JTVI sequences can be used to guide homologous recombination at the PMS2 locus. For example, where a PMS2 mutation is present and therapeutic replacement with a wild-type gene is desired, PMS2 sequences can be used to provide an adjacent region of homology. Similariy, it may be desirable to target other genes to the region adjacent to PMS2. JTVI sequences can be used to flank such other genes, providing one or more regions of homology. If insertion of other genes is desired between the JTVI and the PMS2 sequences, again, this can be accomplished using the identified sequences as homology units for homologous recombination. Examples Example 1 Isolation and sequence analysis of the 5' end of hPMS2. Purified DNA from Pl clone 53, previously determined to contain the hPMS2 gene (Nicolaides, et.al., 1994), was digested with EcoRI and subcloned into the pBluescript vector (Stratagene). Clones containing the 5' region ihPMS2 were identified by hybridization with primer A (Table 1) directed to exon 1. Restriction analysis of several positive clones showed them to be identical. The sequence of the relevant region of hPMS2 was determined from both strands using 35 S α-dATP and Sequenase (USB). Table 1. Primers used for hPMS2. PRIMER NAME STRAND PRIMER SEQUENCE POSITION* A sense 5'- cgggtgttgcatccatgg-3' -14 - +4 B sense 5'-gggtggagcacaacgtcg -3' -110 - -93 C sense 5 ' -ggtcacgacggagaccg-3 ' -283 - -267 D sense 5 '-tgcaggtgggaagctccacacgg-3 ' -414 - -392 E sense 5 ' -tagctcctgccgtgcacg-3 ' -448 - -431 F sense 5 ' -cgctcctacctgcacgtg-3 ' -487 - -470 G antisense 5 ' -tagactcagtaccacctgc-3 ' +90 - +107 H sense 5 ' -tacagaacctgctaaggcc-3 ' +24 - +42 I antisense 5 ' -tttctactaactcctttaccg-3 ' + 116 - +136 J sense 5 ' -caaccatgagacacatcgc-3 ' +2545 - K antisense 5 '-aggttagtgaagactctgtc-3 ' +2647 - +2666 * Relative to the presumptive initiating methionine in Figure 1. Three clones were isolated, each containing an 8.5 kb EcoRI insert. Partial sequence analysis of one clone, pSMN, determined that it contained coding residues of hPMS2 as well as sequences upstream of the previously designated codon 1. The presumptive initiating codon reported previously has been designated as nucleotide 1 in Figure 1. The sequence of hPMS2 was extended 833 bp upstream of nucleotide 1. This sequence revealed an in-frame stop codon 321 nts upstream of the published initiator methionine, with no intervening methionines (Figure 1). Example 2 Isolation of additional cDNA clones using hPMS2 probes. Two cDNA libraries were screened with a probe containing nt +24 to +136 of hPMS2 generated by PCR using Pl clone 53 as template and the primers H and I (Table 1). A human small intestine random-primed cDNA library in λGTIO (Clontech) and a HeLa oligo-dT primed cDNA library in λZAPII (Stratagene) were screened as described except hybridizations were carried out at 68°C and filters were washed at 65°C for 0.5 hrs (Kinzler and Vogelstein, 1989). Following plaque purification, the EcoRI inserts from the small intestine library were subcloned into pBluescript vector, while the HeLa cDNA inserts were rescued as phagemids following the manufacturer's protocol (Stratagene). One clone was isolated from the random-primed small intestine library, and this contained nt -14 to nt +1668 of hPMS2. Two clones were isolated from the oligo-dT primed HeLa cDNA library. The clones began at nt -53 and ended at either nts +2722 or +2749. The HeLa cDNA library was also screened with a 430 bp probe from the 5' genomic region of hPMS2, containing nt -414 to +16, generated by PCR from Pl clone 53 using primers D (Table 1) and O (Table 2). The same two clones were identified, as expected. However, twelve other overlapping clones were found and appeared to represent a different transcript, named JTVI (Figure 2). These twelve cDNAs were approximately 1.2 kb in length and were sequenced in their entirety. All twelve ended with a polyA tract (assumed to be the 3' end) and were identical for 1.2 kb upstream. The 5' ends were located within 38 bp of each other. Comparison with hPMS2 indicated that JTVI was transcribed from the opposite strand. Table 2. Primers used for JTV-1 cDNA amplification. PRIMER NAME STRAND PRIMER SEQUENCE POSITION* L sense 5 ' -gttctgccatgccgatg-3 ' -8 - +9 M sense 5 ' -ggcctttggcacgcgctac-3 ' -23 - -41 N sense 5-accggactgcgttttcccg-3 ' -111 - -129 O sense 5 ' -tctcagctcgctccatgg-3 ' -343 - -360 P antisense 5 ' -gcagagacaggttagactc-3 ' + 139 - +157 Q sense 5 '-gctccttaagtgaattgccg-3 ' +952 - +971 R antisense 5 ' -tgacacttgacaactggcc-3 ' + 1068 - + 1086 Relative to the presumptive initiating methionine in Figure 2. Example 3 77Vi. The length of one clone representative of JTVI (pM23NNFL) was 1233 bp and encoded an open reading frame (ORF) of 936 bp (Figure 2). The first methionine within this ORF was designated codon 1 (Figure 2) and was preceded by an in-frame termination codon 66 bp upstream. This methionine had a reasonable match to the Kozak translation initiation consensus (Kozak, 1986). The 3' end contained a polyadenylation signal (AAUAAA) starting at nucleotide 1086 followed by a polyA tail. The transcript was predicted to encode a polypeptide of 312 amino acids, with a molecular weight of 34.5 kda. Searches of nucleotide and peptide sequence databases showed that this was a novel gene, with limited homology to the glutathione S-transferase gene family. 97/08312 PC17US96/13598 - 10 - Example 4 Chromosomal Mapping of JTVI. The hPMS2 locus was previously mapped to chromosome 7p22 by FISH using Pl clone 53 (Nicolaides et.al., 1994). Because multiple hPMS2-τcla.teά genes are located on the long arm of chromosome 7 and have conserved 5' regions (personal observation, Hori et.al., 1994), we confirmed the genomic localization of JTVI by PCR analysis of rodent-human somatic cell hybrid DNAs containing various regions of chromosome 7 (Scherer et.al., 1993; Powers et.al., 1993). PCR primers were chosen from the 3' untranslated region of hPMS2 and JTVI and shown to amplify genomic DNA. hPMS2 primers J and K yielded a 121 bp product and JTVI primers Q and R yielded a 134 bp product. PCR products for both genes were formed in those DNAs containing the 7p22 region: lines GM10791 (containing the entire human chromosome 7), NA11440 (Coriell Institute) (7p22>7pter) and Ru-Rag4-13 (7cen-7pter) (figure 3, lanes 1, 2, and 3). No products were observed in lines 4AF1/106/K015 (7cen-qter), GM05184.17 (7q21.2-qter), or 2068Rag22-2 (7q22-qter) (figure 3, lanes 4, 5, and 6). Example 5 Analysis of the 5' Termini of hPMS2 and JTVI. The 5' termini of hPMS2 transcripts were studied by standard cDNA cloning, RACE, and RT-PCR analyses. RNA was purified from tissues and cells using a guanidine isothiocyanate based method (Chomezynski and Sacchi, 1987). Reverse transcriptase-polymerase chain reaction (RT-PCR) was performed using randomly primed cDNA as template as described (Leach, et.al., 1993). RT-PCR of the 5' end of hPMS2 was performed using a common antisense primer (I) and the sense primers (A-F) described in Table 1. RT-PCR mapping of the 5' end of JTVI was done using a common antisense primer P and the sense primers L-O as described in Table 2. RACE (rapid amplification of cDNA ends, Frohman, et.al., 1988) was performed on hPMS2 using sequential antisense primers I and G (Table 1) following the manufacturer's protocol (Clontech). RACE analysis of JTVI was done using the antisense primer P (Table 2). Amplification products were cloned into a T-tailed vector (InVitrogen) and sequenced using SP6 and T7 primers. Amplifications were done at 95 °C for 30 sec, 56°C for 1.5 min., and 70°C for 1.5 min for 35 cycles. Reaction products were separated by electrophoresis in 6% nondenaturing polyacrylamide gels. Figure 4 shows the sequence of the genomic region containing the transcriptional initiation sites of both hPMS2 and JTVI, numbered as in Figure 1 with respect to hPMS2. The 5' ends of hPMS2 cDNA clones are marked with arrowheads on the top strand. One clone began at nt -14, one at nt -24, and two at nt -53. RACE products were generated from adult brain, leukocyte, and placenta mRNA. Using an antisense primer corresponding to nt +116 to + 136, multiple bands with approximately 160 to 191 bps were observed in addition to less intense bands of up to 550 bp. The sequence of four cloned RACE products demonstrated that, as expected, their 5' ends were located between nt -25 to -55. These data suggested that the majority of hPMS2 transcripts initiated between nt - 13 to -55, with a minority extending further upstream. This was confirmed by RT-PCR analysis using mRNA from HeLa cells as template. Robust RT-PCR products were amplified with sense primers whose 5' ends were at nt -14, -110, -283, and -414, (primers A, B, C, and D; Table 1) and an antisense primer corresponding to nt +90 to +107 (G). No PCR products were observed using sense primers whose 5' ends were at nt -448 or -487 (primers E and F). To ensure that primers E and F were not defective, successful amplification of genomic DNA was performed using these primers and an antisense primer (O) corresponding to nt -2 to + 16. The 5' termini of JTVI showed a heterogeneous pattern like that of hPMS2. The 5' ends of the 12 cDNA clones are indicated by arrowheads on the bottom strand in figure 4. They were located 73 to 113 nt 73 upstream of codon 1 of JTVI, which coπesponded to nt -271 to -232 of hPMS2. RACE confirmed the cDNA results in that the majority of products generated using an antisense primer P coπesponding to JTVI nt + 157 were 230 to 270 bp. RT-PCR analysis was performed with antisense primer P and several sense primers (L-O) listed in Table 2. PCR products were found with sense primers whose 5' ends were at -8, -23, and -111, (primers L,M, and N) but not with a sense primer O whose 5' end was at nt -360 with respect to JTVI, nt + 1. The latter primer was not defective, as a genomic segment could be successfully amplified with it. Transcripts of hPMS2 had heterogeneous but collinear 5' termini, containing 11 to 415 nt of presumably untranslated sequence. The transcripts contained an in-frame stop codon upstream of the presumptive initiating methionines (Figure 1), making the originally described methionine the most likely translation initiator. Because no other upstream coding regions of hPMS2 appeared to exist, the size discrepancy between that predicted from the hPMS2 sequence and the 110 kDa hPMS2 protein identified by Li and Modrich is likely due to post-transcriptional modifications or alternative internal exons. Our results revealed that KPMS2 overlaps with a novel gene, JTVI, transcribed from the opposite strand (Figure 4). This organization is similar to that of HUMDUG, a /mttS-homolog found on human chromosome 5, and the dihydrofolate reductase (DHFR) gene (Fujii and Shimada, 1989). Both hPMS2- JTV1 and HUMDUG-DHFR lie in a head to head arrangement, both genes are ubiquitously expressed, and both have multiple 5' termini. It has been hypothesized that DHFR and HUMDUG may be regulated via a bidirectional promoter, because a minor subset of the transcripts from the two genes overlap. The major transcripts of HUMDUG and DHFR, however, do not overlap, as is true for hPMS2 and JTVI. It will be of interest to determine whether other mismatch repair genes are arranged in a head to head fashion with a contiguous gene and if JTVI is involved in DNA replication or repair. Example 6 Expression of hPMS2 and JTVI. The expression of hPMS2 and JTVI was analyzed in a variety of mRNA samples prepared from human tissues. RT-PCR was performed on cDNA templates derived from adult brain, leukocytes, kidney, large intestine, colon, salivary gland, lung, testes and prostate using primers J and K for hPMS2 and primers Q and R for JTVI (Tables 1 and 2). 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SEQUENCELISTING (1) GENERAL INFORMATION: (i) APPLICANT: Vogelstein, Bert Kinzler W. , Kenneth Nicolaides C. , Nicholas (ii) TITLE OF INVENTION: Human JTVI Gene Overlaps PMS2 Gene (iii) NUMBER OF SEQUENCES: 5 (iv) CORRESPONDENCE ADDRESS: (A) ADDRESSEE: Banner & Allegretti, LTD. (B) STREET: 1001 G Street, N (C) CITY: Washington DC (E) COUNTRY: U.S.A. (F) ZIP: 20001 (v) COMPUTER READABLE FORM: (A) MEDIUM TYPE: Floppy disk (B) COMPUTER: IBM PC compatible (C) OPERATING SYSTEM: PC-DOS/MS-DOS (D) SOFTWARE: Patentin Release #1.0, Version #1.25 (vi) CURRENT APPLICATION DATA: (A) APPLICATION NUMBER: (B) FILING DATE: (C) CLASSIFICATION: ( viii ) ATTORNEY/AGENT INFORMATION : (A) NAME : Kagan A. , Sarah ( B ) REGISTRATION NUMBER: 32 , 141 ( C ) REFERENCE/DOCKET NUMBER: 1107. 49697 ( ix ) TELECOMMUNICATION INFORMATION : (A) TELEPHONE : 202-508-9100 ( B ) TELEFAX : 202-508-9299 (2) INFORMATION FOR SEQ ID Nθ:l: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 384 base pairs (B) TYPE: nucleic acid (CV STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (iv) ANTI-SENSE: NO (vi) ORIGINAL SOURCE: (A) ORGANISM: Homo sapiens (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 46.. 84 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:l: TTACCTGGTA CATCGGCATG GCAGAACCAA AGCAAAAGGG GGTAG CGC GTG CCA 54 Arg Val Pro 1 AAG GCC AAC GCT CAG AAA CCG TCA GAG GTC ACG ACG GAG ACC GGC CAC 102 Lys Ala Asn Ala Gin Lys Pro Ser Glu Val Thr Thr Glu Thr Gly His 5 10 15 CTC CCT TCT GAC CCT GCT GCG GGC GTT CGG GAA AAC GCA GTC CGG TGT 150 Leu Pro Ser Asp Pro Ala Ala Gly Val Arg Glu Asn Ala Val Arg Cys 20 25 30 35 GCT CTG ATT GGC CCA GGC TCT TTG ACG TCA CGA AGT CGA CCT TTG ACA 198 Ala Leu lie Gly Pro Gly Ser Leu Thr Ser Arg Ser Arg Pro Leu Thr 40 45 50 GAG CCA ATA GGC GAA AAG GAG AGA CGG GAA GTA TTT TTG CCG CCC CGC 246 Glu Pro lie Gly Glu Lys Glu Arg Arg Glu Val Phe Leu Pro Pro Arg 55 60 65 CCG GAA AGG GTG GAG CAC AAC GTC GAA AGC AGC CAA TGG GAG TTC AGG 294 Pro Glu Arg Val Glu His Asn Val Glu Ser Ser Gin Trp Glu Phe Arg 70 75 80 AGG CGG AGC GCC TGT GGG AGC CCT GGA GGG AAC TTT CCC AGT CCC CGA 342 Arg Arg Ser Ala Cys Gly Ser Pro Gly Gly Asn Phe Pro Ser Pro Arg 85 90 95 GGC GGA TCG GGT GTT GCA TCC ATG GAG CGA GCT GAG AGC TCG 384 Gly Gly Ser Gly Val Ala Ser Met Glu Arg Ala Glu Ser Ser 100 105 110 (2) INFORMATION FOR SEQ ID NO:2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 113 amino acids (B) TYPE: amino acid (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2: Arg Val Pro Lys Ala Asn Ala Gin Lys Pro Ser Glu Val Thr Thr Glu 1 5 10 15 Thr Gly His Leu Pro Ser Asp Pro Ala Ala Gly Val Arg Glu Asn Ala 20 25 30 Val Arg Cys Ala Leu lie Gly Pro Gly Ser Leu Thr Ser Arg Ser Arg 35 40 45 Pro Leu Thr Glu Pro lie Gly Glu Lys Glu Arg Arg Glu Val Phe Leu 50 55 60 Pro Pro Arg Pro Glu Arg Val Glu His Asn Val Glu Ser Ser Gin Trp 65 70 75 80 Glu Phe Arg Arg Arg Ser Ala Cys Gly Ser Pro Gly Gly Asn Phe Pro 85 90 95 Ser Pro Arg Gly Gly Ser Gly Val Ala Ser Met Glu Arg Ala Glu Ser 100 105 110 Ser (2) INFORMATION FOR SEQ ID NO:3: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 1233 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (vi) ORIGINAL SOURCE: (A) ORGANISM: Homo sapiens (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION: 114..1049 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:3: CCGAACGCCC GCAGCAGGGT CAGAAGGGAG GTGGCCGGTC TCCGTCGTGA CCTCTGACGG 60 TTTCTGAGCG TTGGCCTTTG GCACGCGCTA CACCCTTTTG CTTTGGTTCT GCC ATG 116 Met 1 CCG ATG TAC CAG GTA AAG CCC TAT CAC GGG GGC GGC GCG CCT CTC CGT 164 Pro Met Tyr Gin Val Lys Pro Tyr His Gly Gly Gly Ala Pro Leu Arg 5 10 15 GTG GAG CTT CCC ACC TGC ATG TAC CGG CTC CCC AAC GTG CAC GGC AGG 212 Val Glu Leu Pro Thr Cys Met Tyr Arg Leu Pro Asn Val His Gly Arg 20 25 30 AGC TAC GGC CCA GCG CCG GGC GCT GGC CAC GTG CAG GAA GAG TCT AAC 260 Ser Tyr Gly Pro Ala Pro Gly Ala Gly His Val Gin Glu Glu Ser Asn 35 40 45 CTG TCT CTG CAA GCT CTT GAG TCC CGC CAA GAT GAT ATT TTA AAA CGT 308 Leu Ser Leu Gin Ala Leu Glu Ser Arg Gin Asp Asp lie Leu Lys Arg 50 55 60 65 CTG TAT GAG TTG AAA GCT GCA GTT GAT GGC CTC TCC AAG ATG ATT CAA 356 Leu Tyr Glu Leu Lys Ala Ala Val Asp Gly Leu Ser Lys Met He Gin 70 75 80 ACA CCA GAT GCA GAC TTG GAT GTA ACC AAC ATA ATC CAA GCG GAT GAG 404 Thr Pro Asp Ala Asp Leu Asp Val Thr Asn He He Gin Ala Asp Glu 85 90 95 CCC ACG ACT TTA ACC ACC AAT GCG CTG GAC TTG AAT TCA GTG CTT GGG 452 Pro Thr Thr Leu Thr Thr Asn Ala Leu Asp Leu Asn Ser Val Leu Gly 100 105 110 AAG GAT TAC GGG GCG CTG AAA GAC ATC GTG ATC AAC GCA AAC CCG GCC 500 Lys Asp Tyr Gly Ala Leu Lys Asp He Val He Asn Ala Asn Pro Ala 115 120 125 TCC CCT CCC CTC TCC CTG CTT GTG CTG CAC AGG CTG CTC TGT GAG CAC 548 Ser Pro Pro Leu Ser Leu Leu Val Leu His Arg Leu Leu Cys Glu His 130 135 140 145 TTC AGG GTC CTG TCC ACG GTG CAC ACG CAC TCC TCG GTC AAG AGC GTG 596 Phe Arg Val Leu Ser Thr Val His Thr His Ser Ser Val Lys Ser Val 150 155 160 CCT GAA AAC CTT CTC AAG TGC TTT GGA GAA CAG AAT AAA AAA CAG CCC 644 Pro Glu Asn Leu Leu Lys Cys Phe Gly Glu Gin Asn Lys Lys Gin Pro 165 170 175 CGC CAA GAC TAT CAG CTG GGA TTC ACT TTA ATT TGG AAG AAT GTG CCG 692 Arg Gin Asp Tyr Gin Leu Gly Phe Thr Leu He Trp Lys Asn Val Pro 180 185 190 AAG ACG CAG ATG AAA TTC AGC ATC CAG ACG ATG TGC CCC ATC GAA GGC 740 Lys Thr Gin Met Lys Phe Ser He Gin Thr Met Cys Pro He Glu Gly 195 200 205 GAA GGG AAC ATT GCA CGT TTC TTG TTC TCT CTG TTT GGC CAG AAG CAT 788 Glu Gly Asn He Ala Arg Phe Leu Phe Ser Leu Phe Gly Gin Lys His 210 215 220 225 AAT GCT GTC AAC GCA ACC CTT ATA GAT AGC TGG GTA GAT ATT GCG ATT 836 Asn Ala Val Asn Ala Thr Leu He Asp Ser Trp Val Asp He Ala He 230 235 240 TTT CAG TTA AAA GAG GGA AGC AGT AAA GAA AAA GCC GCT GTT TTC CGC 884 Phe Gin Leu Lys Glu Gly Ser Ser Lys Glu Lys Ala Ala Val Phe Arg • 245 250 255 TCC ATG AAC TCT GCT CTT GGG AAG AGC CCT TGG CTC GCT GGG AAT GAA 932 Ser Met Asn Ser Ala Leu Gly Lys Ser Pro Trp Leu Ala Gly Asn Glu 260 265 270 CTC ACC GTA GCA GAC GTG GTG CTG TGG TCT GTA CTC CAG CAG ATC GGA 980 Leu Thr Val Ala Asp Val Val Leu Trp Ser Val Leu Gin Gin He Gly 275 280 285 GGC TGC AGT GTG ACA GTG CCA GCC AAT GTG CAG AGG TGG ATG AGG TCT 1028 Gly Cys Ser Val Thr Val Pro Ala Asn Val Gin Arg Trp Met Arg Ser 290 295 300 305 TGT GAA AAC CTG GCT CCT TTT TAACACGGCC CTCAAGCTCC TTAAGTGAAT 1079 Cys Glu Asn Leu Ala Pro Phe 310 TGCCGTAACT GATTTTAAAG GGTTTAGATT TTAAGAATGG TGCTCTTTCA TGCCTATTAT 1139 CAGTAAGGGG ACTTGTATTA GAGTCAGAGT CTTTTTATTT AGGCCAGTTG TCAAGTGTCA 1199 ATAAAAGCGC ATCATGTAAT TTAAAAAAAA AAAA 1233 (2) INFORMATION FOR SEQ ID NO:4: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 312 amino acids (B) TYPE: amino acid (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO:4: Met Pro Met Tyr Gin Val Lys Pro Tyr His Gly Gly Gly Ala Pro Leu 1 5 10 15 Arg Val Glu Leu Pro Thr Cys Met Tyr Arg Leu Pro Asn Val His Gly 20 25 30 Arg Ser Tyr Gly Pro Ala Pro Gly Ala Gly His Val Gin Glu Glu Ser 35 40 45 Asn Leu Ser Leu Gin Ala Leu Glu Ser Arg Gin Asp Asp He Leu Lys 50 55 60 Arg Leu Tyr Glu Leu Lys Ala Ala Val Asp Gly Leu Ser Lys Met He 65 70 75 80 Gin Thr Pro Asp Ala Asp Leu Asp Val Thr Asn He He Gin Ala Asp 85 90 95 Glu Pro Thr Thr Leu Thr Thr Asn Ala Leu Asp Leu Asn Ser Val Leu 100 105 110 Gly Lys Asp Tyr Gly Ala Leu Lys Asp He Val He Asn Ala Asn Pro 115 120 125 Ala Ser Pro Pro Leu Ser Leu Leu Val Leu His Arg Leu Leu Cys Glu 130 135 140 His Phe Arg Val Leu Ser Thr Val His Thr His Ser Ser Val Lys Ser 145 150 155 160 Val Pro Glu Asn Leu Leu Lys Cys Phe Gly Glu Gin Asn Lys Lys Gin 165 170 175 Pro Arg Gin Asp Tyr Gin Leu Gly Phe Thr Leu He Trp Lys Asn Val 180 185 190 Pro Lys Thr Gin Met Lys Phe Ser He Gin Thr Met Cys Pro He Glu 195 200 205 Gly Glu Gly Asn He Ala Arg Phe Leu Phe Ser Leu Phe Gly Gin Lys 210 215 220 His Asn Ala Val Asn Ala Thr Leu He Asp Ser Trp Val Asp He Ala 225 230 235 240 He Phe Gin Leu Lys Glu Gly Ser Ser Lys Glu Lys Ala Ala Val Phe 245 250 255 Arg Ser Met Asn Ser Ala Leu Gly Lys Ser Pro Trp Leu Ala Gly Asn 260 265 270 Glu Leu Thr Val Ala Asp Val Val Leu Trp Ser Val Leu Gin Gin He 275 280 285 Gly Gly Cys Ser Val Thr Val Pro Ala Asn Val Gin Arg Trp Met Arg 290 295 300 Ser Cys Glu Asn Leu Ala Pro Phe 305 310 (2) INFORMATION FOR SEQ ID NO:5: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 900 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: NO (iv) ANTI-SENSE: NO (vi) ORIGINAL SOURCE: (A) ORGANISM: Homo sapiens (ix) FEATURE: (A) NAME/KEY: mRNA (B) LOCATION: complement (1..900) (xi) SEQUENCE DESCRIPTION: SEQ ID NO:5: ACACCCGGCC AATTTCTGTA TTTTTAGTAG AGACGAGGTT TTACCATGTT GGCCAGGCTA 60 GTCTCGAACT CCTGACCTCA GGTGATCCGC CCGCCTCGGC CTCCCAAAGT GCTGGGATTA 120 CAGGCGTGAG CCACGGCGCC CGGCCTGGAT AAATCTTTTA AAAGATAAAA GTCTGAGTGA 180 GTCCCTGGCC GGCCGGCACA GATGCCGGGG TGGGGCCGTG AACCGGTTGG GACGCGCTCG 240 CTCCGGCCTG GGGGGACCCG GGCCAGCAGC CGGTCGCCGC GCGTGCGCAC TGGGCGGGGG 300 GCCCCGCGCT CCTACCTGCA CGTGGCCAGG CCCGGCGCTG GGCCGTAGCT CCTGCCGTGC 360 ACGTTGGGGA GCCGGTACAT GCAGGTGGGA AGCTCCACAC GGAGAGGCGC GCCGCCCCCG 420 TGATAGGGCT TTACCTGGTA CATCGGCATG GCAGAACCAA AGCAAAAGGG GGTAGCGCGT 480 GCCAAAGGCC AACGCTCAGA AACCGTCAGA GGTCACGACG GAGACCGGCC ACCTCCCTTC 540 TGACCCTGCT GCGGGCGTTC GGGAAAACGC AGTCCGGTGT GCTCTGATTG GCCCAGGCCC 600 TTTGACGTCA CGAAGTCGAC CTTTGACAGA GCCAATAGGC GAAAAGGAGA GACGGGAAGT 660 ATTTTTGCCG CCCCGCCCGG AAAGGGTGGA GCACAACGTC GAAAGCAGCC AATGGGAGTT 720 CAGGAGGCGG AGCGCCTGTG GGAGCCCTGG AGGGAACTTT CCCAGTCCCC GAGGCGGATC 780 GGGTGTTGCA TCCATGGAGC GAGCTGAGAG CTCGAGGTGA GCGGGGCTCG CAGTCTTCCG 840 GTGTCCCCTC TCGCGCGCCC TCTTTGAGAC CCACGGCATT CCAACCTCCC TGGAAATGGG 900

Claims: CLAIMS 1. A segment of cDNA consisting of the nucleotide sequence shown in Figure 2. 2. A vector comprising the segment of DNA of claim 1. 3. A host cell which comprises the vector of claim 2. 4. A composition consisting essentially of a protein consisting of the amino acid sequence shown in Figure 2. 5. A composition of protein 77Y7 as shown in Figure 1, wherein said composition is free of other human proteins. 6. A segment of cDNA which encodes the amino acid sequence of JTVI protein shown in Figure 2. 7. A cDNA probe wherein said cDNA consists of between 15 and 1176 contiguous nucleotides of the sequence shown in SEQ ID NO: l.

Inventors: KINZLER KENNETH W, NICOLAIDES NICHOLAS C, VOGELSTEIN BERT, KINZLER, KENNETH, W., NICOLAIDES, NICHOLAS, C., VOGELSTEIN, BERT
Applicants: UNIV JOHNS HOPKINS, THE JOHNS HOPKINS UNIVERSITY
Application year: 1996
Main classification: C12N15
IPC codes: C07K14, C12N1, C12N15, C12Q1