PACKAGING SYSTEMS FOR HUMAN RECOMBINANT ADENOVIRUS TO BE USED IN GENE THERAPY

Abstract: The invention provides improved methods and products based on adenoviral materials which can advantageously be used in for instance gene therapy. In one aspect an adenoviral vector is provided which has no overlap with a suitable packaging cell line which is another aspect of invention. This combination excludes the possibility of homologous recombination, thereby excluding the possibility of the formation of replication competent adenovirus. In another aspect an adenovirus based helper construct which by its size is incapable of being encapsidated. This helper virus can be transferred into any suitable host cell making it a packaging cell. Further a number of useful mutations to adenoviral based materials and combinations of such mutations are disclosed, which all have in common the safety of the methods and the products, in particular avoiding the production of replication competent adenovirus and/or interference with the immune system. Further a method of intracellular amplification is provided.

Description: Title. Packaging systems for human recombinant adenovirus to be used in gene therapy. The invention relates to the field of recombinant DNA tecnnology, more in particular to the field of gene therapy In particular the invention relates to gene therapy using materials derived from adenovirus, in particular human recombinant adenovirus It especially relates to novel virus derived vectors and novel packaging cell lines for vectors based on adenoviruses . Gene therapy is a recently developed concept for which a w de range of applications can be and have been envisaged In gene therapy a molecule carrying genetic information is introduced into some or all cells of a host, as a result of which the genetic information is added to the host n a functional format. The genetic information added may be a gene or a derivative of a gene, sucn as a cDNA, whicn encodes a protein. In this case the functional format means that the protein can be expressed by the machinery of the host cell. The genetic information can also be a sequence of nucleotides complementary to a sequence of nucleotides (be it DNA or RNA) present in the host cell. The functional format m this case is that the added DNA (nucleic acid) molecule or copies made thereof m situ are capable of base pairing with the complementary sequence present in the host cell Applications include the treatment of genetic disorders by supplementing a protein or other substance which is, through said genetic disorder, not present or at least present m insufficient amounts in the host, the treatment of tumors and (other) acquired diseases such as (auto)immune diseases or infections, etc. As may be clear from the above, tnere are basically three different approaches in gene therapy, one directed towards compensating a deficiency present in a (mammalian) host, the second directed towards the removal or elimination of unwanted substances (organisms or cells) and the third towards application of a recombinant vaccine (tumors or foreign micro-organisms) For the purpose of gene therapy aαenov ruses carrying deletions have been proposed as suitable. v ehicles Adenoviruses are non-enveloped DNA viruses Gene-transfer vectors derived from adenoviruses (so-called adenoviral vectors) have a number of features that make them particularly useful for gene transfer for such purposes Eg the biology of the adenoviruses is characterized in detail, the aαenovirus is not associated with se v ere human pathology, the virus is extremely efficient in introducing its DNA into the host cell, the virus can infect a wioe variety of cells and has a broad host-range, the virus can be produced n large quantities with relative ease and the virus can be rendered replication defective by deletions in the early- region 1 (El) of the viral genome The adenovirus genome is a linear double-stranded DNA molecule or approximately 36000 base pairs with the 55-kDa terminal protein covalently bound to the 5 'terminus of each strand The Ad DNA contains identical Inverted Terminal Repeats (ITR) of about 100 base pairs witn the exact length depending on the serotype. The viral origins of replication are located within the ITRs exactly at the genome ends DNA synthesis occurs in two stages First, the replication proceeds ny strand displacement, generating a daughter duple molecule and a parental displaced strand The displaced strand is single stranded and can form a so-called "panhandle" intermediate, which allows replication initiation and generation of a daughter duplex molecule Alternatively, replication may proceed from both ends of the genome simultaneously, obviating the requirement to form the pannandle structure. The replication s summarized in Figure 14 adapted from (Lechner and Kelly, 19 " "). During the productive infection cycle, tr.e viral genes are expressed in two phases, the early p.iase, which is the period upto viral DNA replication, and the late phase, which coincides with the initiation of "iral DNA replication. During the early phase only the early gene products, encoded by regions El, E2, E3 and E4 are expressed, which carry out a number of functions that prepare the cell for synthesis of viral structural proteins (Berk, 1986) . During the late phase t.ie late viral gene products are expressed n addition to the early gene products and host cell DNA and protein synthesis are shut off Consequently, the cell becomes dedicated to the production of viral DNA and of viral structura- proteins (Tooze, 1981) The El region of adenovirus s the first region of adenovirus expressed after infection of the target cell This region consists of two transcriptional units, the ElA and ElB genes, which both are required for oncogenic transformation of primary (embryonal) rodent cultures. The main functions of the ElA gene products are. l) to induce quiescent cells to enter the ceil cycle and resume cellular DNA synthesis, and ii) to transcriptionally activate the ElB gene and the other early regions (E2, E3 , E4 ) Transfection of primary ceils with the ElA gene alone can induce unlimited proliferation (immortalization), but does not result in complete transformation. However, expression cf ElA in most cases results in induction of programmed cell death (apoptosis), and only occasionally immortalization is obtained (Jochemsen et al . , 1987) Co-expression of the ElB gene is required to prevent induction of apoptosis and for complete morphological transformation to occur. In established immortal cell lines, high level expression of ElA can cause complete transformation n the absence of ElB (Roberts et al. , 1985) . The ElB encoded proteins assist ElA n redirecting the cellular functions to allow viral replication. The ElB 55 kD and E4 33kD proteins, which form a complex that is essentially localized in the nucleus, function in inhibiting the synthesis of host proteins and in facilitating the expression of viral genes. Their main influence s to establisn selective transport of viral mRNAs from the nucleus to the cytoplasm, concomittantly with the onset of the late phase of nfeςtion The ElB 21 kD protein is important for correct temporal control of the productive infection cycle, thereby preventing premature death of the host cell before the virus life cycle has been completed Mutant viruses incapable of expressing the ElB 21 kD gene-product exhibit a shortened infection cycle that is accompanied by excessive degradation of host cell chromosomal DNA (decj-phenotype) and in an enhanced cytopathic effect ( cyt-phenotype) (Telling et al , 1994) The deg and cyt p enotypes are suppressed when in addition the ElA gene is mutated, indicating that these pnenotypes are a function of ElA (White et al., 1988). Furthermore, the ElB 21 kDa protein slows down the rate by wmch ElA switches on the other viral genes It is not yet known through which mechanisms) ElB 21 kD quenches these ElA dependent functions Vectors derived from human adenoviruses, in which at least the El region has oeen deleted and replaced by a gene of interest, have oeen used extensively for gene therapy experiments in tne pre-clinical and clinical phase. As stated before all adenovirus vectors currently used in gene therapy have a deletion in the El region, where novel genetic information can be introduced. The El deletion renders the recomoinant virus replication defective (Stratford-Perricaudet and Pemcaudet, 1991) We have demonstrated that recombinant adenoviruses are able to efficiently transfer recombinant genes to the rat liver and airway epithelium of rhesus monkeys (Bout et al., 1994b, Bout et al. , 1994a) In addition, we (Vincent et al , 1996a, Vincent et al . , 1996b) and others (see e.g Haddada et al. , 1993) have observed a very efficient m vivo adenovirus mediated gene transfer to a variety of tumor cells in vitro and to solid tumors in animals models (lung tumors, glioma) and human xenografts in immunodeflclent mice (lung) in vivo (reviewed by Blaese et al , 1995) In contrast to for instance retroviruses, adenoviruses a) do not integrate into the host cell genome; b) are able to infect non-dividing cells and c) are able to efficiently transfer recombinant genes in vivo (Brody and Crystal, 1994) Those features make adenoviruses attractive candidates for in vivo gene transfer of, for instance, suicide or cytokine genes into tumor cells However, a problem associated with current recombinant adenovirus technology is the possibility of unwanted generation of replication competent adenovirus (RCA) during the production of recombinant adenovirus (Lochmuller et al , 1994, Imler et al , 1996) This is caused by homologous recombination between overlapping sequences from the recombinant vector and the adenovirus constructs present in the complementing cell line, such as the 293 cells (Grana et al . , 1977) RCA in batches to be used in clinical trials is unwanted because RCA l) will replicate in an uncontrolled fashion, ii) can complement replication defective recombinant adenovirus, causing uncontrolled multiplication of the recombinant adenovirus and m) batches containing RCA induce significant tissue damage and hence strong pathological side effects (Lochmuller et al , 1994) Therefore, batches to be used n clinical trials should be proven free of RCA (Ostrove, 1994) In one aspect of the invention this problem in virus production is solved in that we have developed packaging cells that have no overlapping sequences with a new basic vector and thus are suited for safe large scale production of recombinant adenoviruses one of the additional problems associated with the use of recombinant adenovirus vectors is the host-defence reaction against treatment with adenovirus Briefly, recombinant adenoviruses are deleted for the El region (see above) The adenovirus Ξl products trigger the transcription of the other early genes (E2, E3 , E4 ) , which consequently activate expression of the late virus genes Therefore, it was generally thought that El deleted vectors would not express any other adenovirus genes However, recently it has been demonstrated that some cell types are able to express adenovirus genes in the absence of El sequences This indicates, that some cell types possess the machinery to drive transcription of adenovirus genes In particular, it was demonstrated that such cells synthesize E2A and late adenovirus proteins In a gene therapy setting, this means that transfer of the therapeutic recombinant gene to somatic cells not only results in expression of the therapeutic protein but may also result in the synthesis of viral proteins Cells that express adenoviral proteins are recognized and killed by Cytotoxic T Lymphocytes, which thus a) eradicates the transduced cells and b) causes inflammations (Bout et al 1994a Enσelnardt et al , 1993 Simon et al , 1993) As this adverse reaction is hampering gene therapy, several solutions to this problem have been suggested, such as a) using lmmunosuppressive agents after treatment, b) retainment of the adenovirus E3 region n the recombinant vector (see patent application EP 95202213) and c) and using ts mutants of human adenovirus, nich have a point mutation in the E2A region (patent WO/28938) However these strategies to circumvent the immune response have their limitations The use of ts mutant recombinant adenovirus diminishes the immune response to some extent, but was less effective n preventing pathological responses in the lungs (Enαeihardt et al , 1994a) The E2A protein may induce an immune response by itself and it plays a pivotal role in the s w itch to the synthesis of late adenovirus proteins Therefore, it is attractive to rnaxe recombinant adenoviruses wnich are mutated m the E2 region, rendering it temperature sensitive (ts), as has been claimed in patent application WO/28938 A major drawoack of this system is the fact that, alt ough the E2 protein is unstable at the non-permissive temperature, the immunogenic protein is still being synthesized In addition, it is to be expected that the unstable protein does activate late gene expression, albeit to a low extent tsl25 mutant recomomant adenoviruses have been tested, and prolonged recombinant gene expression was reported (Yang et al , 1994b Engeihardt et al 1994a, Engelhardt et al 1994b Yang et al. , 1995) However, pathology in the lungs of cotton rats was still high (Engelhardt et al , 1994a;, indicating that the use of ts mutants results in only a partial improvement in recombinant adenovirus technology Others (Fang et al. , 1996) did not observe prolonged gene expression in mice and dogs using tsl25 reccrπn nant adenovirus An additional difficulty associated with the use of tsl25 mutant adenoviruses is that a niσn frequency of reversion is ooserved These revertants are either rea revertants or the result of second site mutations (Kruijer et al , 1983, Nicolas et al , 1981) Both types of revertants have an E2A protein that functions at normal temperature and have therefore similar toxic ty as the virus In another aspect of the present invention we therefore delete E2A coding sequences from tne recombinant adenovirus genome and transfect these E2A sequences into the (packaging) cell lines containing El sequences to comDiement recombinant adenovirus vectors o Major hurdles m this approach are a) that E2A should be expressed to very high levels and b) that E2A protein is very toxic to cells The current invention in yet another aspect therefore discloses use of the tsl25 mutant E2A gene, which produces a protein that is not anle to bind DNA sequences at the non permissive temperature High levels of this protein may be maintained in the cells (because it is not toxic at this temperature) until tne switch to the permissive temperature is made This can be combined witn placing the mutant E2A gene under the direction of an mducible promoter, such as for instance tet, methallothionem, steroid mducible promoter retmoic acid β-receptor or otner mducible systems However n yet another aspect of the invention, the use or an mducible promoter to control the moment of production of toxic wild-type E2A is disclosed Two salient additional advantages of E2A-deleted recombinant adenovirus are the increased capacity to harpor heterologous sequences and the permanent selection for cells that express tne mutant E2A This second advantage relates to the high frequency of reversion of tsl25 mutation when reversion occurs in a cell line narooring tsl25 E2A, this v/ill be lethal to tne cell Therefore there is a permanent selection for those cells that express the tsl25 mutant E2A protein In addition, as we in one aspect of the invention generate E2A-deleted recombinant aoenov rus, we will not have the problem of reversion m our adenoviruses In yet another aspect of the invention as a further improvement the use of non-human cell lines as packaging cell lines is disclosed For GMP production of clinical batches of recombinant viruses it is desirable to use a cell line that has been used widely for production of other biotechnology products Most of the latter cell lines are from monkey origin, which have been used to produce e g vaccines y These cells can not be used directly for the production of recombinant human adenovirus, as human adenovirus can not or only to low levels replicate in cells of monkey origin. A block in the switch of early to late phase of adenovirus lytic cycle is underlying defective replication. However, host range mutations in the human adenovirus genome are described (hr400 - 404) which allow replication of human viruses in monkey cells . These mutations reside in the gene encoding E2A protein (Klessig and Grodzicker, 1979; Klessig et al. , 1984; Rice and Klessig, 1985) (Klessig et al. , 1984) . Moreover, mutant viruses have been described that harbor both the hr and temperature-sensitive tsl25 phenotype (Brough et al . , 1985; Rice and Klessig, 1985). We therefore generate packaging cell lines of monkey origin (e.g. VERO, CV1) that harbor: a. El sequences, to allow replication of E1/E2 defective adenoviruses, and b. E2A sequences, containing the hr mutation and the ts 125 mutation, named ts400 (Brough et al. , 1985; Rice and Klessig, 1985) to prevent cell death by E2A overexpression, and/or c. E2A sequences, just containing the hr mutation, under the control of an inducible promoter, and/or d. E2A sequences, containing the hr mutation and the ts 125 mutation (ts400), under the control of an inducible promoter Furthermore we disclose the construction of novel and improved combinations of (novel and improved) packaging cell lines and (novel and improved) recombinant adenovirus vectors . We provide: 1. a novel packaging cell line derived from diploid human embryonic retinoblasts (HER) that harbors nt. 80 - 5788 of the Ad5 genome.This cell line, named 911, deposited under no 95062101 at the ECACC, has many characteristics that make it superior to the commonly used 293 cells (Fallaux et al . , 1996). 2. novel packaging cell lines that express just ElA genes and not ElB genes . Established cell lines (and not human diploid cells of which 293 and 911 cells are derived) are able to express ElA to high levels without undergoing apoptotic cell death, as occurs in numan diploid cells that express ElA in the absence of ΞIB. Such ceil lines are able to trans-complement E1B- defective recombinant adenoviruses, because viruses mutated for ElB 21 kD protein are apie to complete viral replication even faster than wild-type adenoviruses (Telling et al. , 1994) The constructs are described in detail below, and graphically represented in Figures 1-5 The constructs are transfected into the different established cell lines and are selected for high expression of ElA. This is done by operatively linking a selectable marker gene (e.g. NΞO gene) directly to the ElB promoter The ElB promoter is transcriptionally activated by the ElA gene product and therefore resistance to the selective agent (e.g. G418 in the case NEO is used as the selection marker) results m direct selection for desired expression of the ElA gene 3 Packaging constructs that are mutated or deleted for ElB 21 J<D, but ust express the 55 protein 4 Packaging constructs to be used for generation of complementing packaging cell lines from diploid cells (not exclusively of human origin) without the need of selection with marker genes . These cells are immortalized by expression of ElA However, in this particular case expression of ElB is essential to prevent apoptosis induced by ElA proteins Selection of El expressing cells is achieved by selection for focus formation (immortalization), as described for 293 cells (Graham et al , 1977) and 911 cells (Fallaux et al, 1996), that are El-transformed human embryonic kidney (HEK) cells and r.__uan embryonic ret oblasts (HER), respectively 5 After transfection of HER cells with construct pIG.ElB (Fig. 4), seven independent cell lines cculd be established. These cell lines were designated PER.C1, PER.C3, PER.C4, PER.C5, PER.C6, PER.C8 ar.d PER.C9. PER denotes PGK-El-Retmoblasts . These cell lines express ElA and ElB proteins, are stable (e.g PΞR.C6 for more than 57 passages) and complement El defective adenovirus vectors . Yields of recombinant adenovirus obtained on PER cells are a little higher than obtained on 293 cells. One of these cell lines (PER.C6) has been deposited at tne ECACC αnder number 96022940 6 New adenovirus vectors with extended El deletions (deletion nt 459 - 3510) Those viral "ectors lack sequences homologous to El sequences in said packaging cell lines . These adenoviral vectors contain pIX promoter sequences and the pIX gene, as ?IX (from its natural promoter sequences) can only b expressed from the vector and not by packaging cells (l.atsui et al , 1986, Hoeben and Fallaux, pers comm. , Im_.er et al . , 1996) . E2A expressing packaging cell lines preferably based on either ElA expressing established ce _ lines or ElA - ElB expressing diploid cells (see unoer 2 - 4) . E2A expression is either under the control cf an inducible promoter or the E2A tsl25 mutant is dri"en by either an mducible or a constitutive promoter 8 Recombinant adenovirus vectors as described before (see 6) but carrying an additional deletion of E2A sequences 9 Adenovirus packaging cells from monkey origin that are able to trans-complement El-defective recombinant adenoviruses. They are preferably co-transfected with pIG.ElAElB and pIG.NEO, and selected for NEO resistance. Such cells expressing ElA and ElB are able to transcomplement El defective recombinant human adenoviruses, but will do so inefficiently because of a block of the synthesis of late adenovirus proteins in cells of monkey origin (Klessig and Grodzicker, 1979) To overcome this problem, we generate recombinant adenoviruses that harbor a host-range mutation in the E2A gene, allowing human adenoviruses to replicate n monkey cells Such viruses are generated as described in Figure 12, -except DNA from a hr-mutant is used for homologous recombination 10 Adenovirus packaging cells from monkey origin as described under 9, except that they will also be co-transfected with E2A sequences harboring the r.r mutation. This allows replication of human adenoviruses lacking El and E2A (see under 8) E2A in these cell lines s either under the control of an mducible promoter or the tsE2A mutant is used. In the latter case, the E2A gene will thus carry both tne ts mutation and the hr mutation (derived from ts400) Replication competent human adenoviruses have been described that harbor both mutations (Brough et al . , 1985; Rice and Klessig, 1985) A further aspect of the invention provides otherwise improved adenovirus vectors, as well as novel strategies for generation and application of such vectors and a method for the mtracellular amplification of linear DNA fragments in mammalian cells . The so-called "minimal" adenovirus vectors according to the present invention retain at least a portion of the viral genome that is required for encapsidation of tne genome into virus particles (the encapsidation signal), as well as at least one copy of at least a functional part or a derivative of the Inverted Terminal Repeat (ITR), that is DNA sequences derived from the termini of the linear adenovirus genome. The vectors according to the present invention will also contain a transgene linked to a promoter sequence to govern expression of the transgene Packaging of the so-called minimal adenovirus vector can be achieved by co-infection with a helper virus or, alternatively, with a packaging deficient replicating helper system as described below Adenovirus-derived DNA fragments that can replicate n suitable cell lines and that may serve as a packaging deficient replicating helper system are generated as follows . These DNA fragments retain at least a portion of the transcribed region of the "late" transcription unit of the adenovirus genome and carry deletions in at least a portion of the El region and deletions n at least a portion of the encapsidation signal In addition, these DNA fragments contain at least one copy of an inverted terminal repeat (ITR) At one terminus of the transfected DNA molecule an ITR is located The other end may contain an ITR, or alternatively, a DNA sequence that is complementary to a portion of the same strand of the DNA molecule other than the ITR If, in the latter case, the two complementary sequences anneal, the free 3 ' -hydroxyl group of the 3 ' terminal nucleotide of the hairpm- structure can serve as a primer for DNA synthesis by cellular and/or adenovirus-encoded DNA poiymerases, resulting in conversion into a double-stranded form of at least a portion of the DNA molecule Further replication initiating at the ITR will result in a linear double- stranded DNA molecule, that is flanked by two ITR's, and is larger than the original transfected DNA molecule (see Fig 13) This molecule can replicate itself in the transfected cell by virtue of the adenovirus proteins encoded by the DNA molecule and the adenoviral and cellular proteins encoded by genes n the host-cell genome This DNA molecule can not be encapsidated due to its large size (greater than 39000 base pairs) or due to the absence or a functional encapsidation signal This DNA molecule is intended to serve as a helper for the production of defective adenovirus vectors in suitable cell lines The invention also comprises a method for the amplification of linear DNA fragments of variable size in suitable mammalian cells. These DNA fragments contain at least one copy of the ITR at one of the termini of the fragment. The other end may contain an ITR, or alternatively, a DNA sequence that is complementary to a portion of the same strand of the DNA molecule other than the ITR. If, in the latter case, the two complementary sequences anneal, the free 3 ' -hydroxyl group of the 3' terminal nucleotide of the hairpin-structure can serve as a primer for DNA synthesis by cellular and/or adenovirus-encoded DNA poiymerases, resulting in conversion of the displaced stand into a double stranded form of at least a portion of the DNA molecule. Further replication initiating at the ITR will result in a linear double-stranded DNA molecule, that is flanked by two ITR's, which is larger than the original transfected DNA molecule. A DNA molecule that contains ITR sequences at both ends can replicate itself in transfected cells by virtue of the presence of at least the adenovirus E2 proteins r * ιz the DNA-bmding protein DBP), the adenovirus DNA polymerase (Ad-pol), and the preterminal protein (pTP) The required proteins may be expressed from adenovirus genes on the DNA molecule itself, from adenovirus E2 genes integrated in the host-cell genome, or from a replicating helper fragment as described above Several groups have shown that the presence of ITR sequences at the end of DNA molecules are sufficient to generate adenovirus mmichromosomes that can replicate, if the adenovirus-proteins required for replication are provided ir. trans e g. by infection with a heipervirus (Hu et al., 1992), (Wang and Pearson, 1985 (Hay et al . , 1984) Hu et al . , (1992) observed the presence and replication of symmetrical adenovirus minichromosome- dimers after transfection of plasmids containing a single ITR. The authors were able to demonstrate that these dimer c mmichromosomes arize after tail-to-tail ligation of the single ITR DNA molecules In DNA extracted from defective adenovirus type 2 particles, dimeric molecules of various sizes have also been observed using electron- microscopy (Darnell, 1976) . It was suggested that the incomplete genomes were formed by illegitimate recombination between different molecules and that variations in the position of the sequence at which the illegitimate base pairing occurred were resonsible for the heterogeneous nature of the incomplete genomes . Based on this mechanism it was speculated that, in theory, defective molecules with a total length of up to two times the normal genome could be generated. Such .Tic ecules could contain duplicated sequences from either enc of the genome. However, no DNA molecules larger than the full- length virus were found packaged in the defective particles (Darnell, 1976) . This can be explained by the size-limitations that apply to the packaging In addition, it was observed that m the virus particles DNA-molecules with a duplicated left-end predominated over those containing the right-end terminus (Darnell, 1976) . This is fully explained by the presence of the encapsidation signal near that left-end of the genome (Grable and Hearing, 1990, Grable and Hearing, 1992 Hearing et al 198 " , The major problems associated with the current adenovirus-derived vectors are: A) The strong lmmunogenicity of the virus particle B) The expression of adenovirus genes that reside in tne adenoviral vectors, resulting in a Cytotoxic T-cell response against the transduced cells C) The low amount of heterologous sequences that can oe accommodated in the current vectors (Up to maximally approx. 8000 bp. of heterologous DNA). Ad A) The strong immunogenicity of the adenovirus particle results m an immunological response of the host, even after a single administration of the adenoviral vector. As a result of the development of neutralizing antibodies, a subsequent administration of the virus will be less effective or even completely ineffective. However, a prolonged or persistent expression of the transferred genes will reduce the number of administrations required and may bypass the problem. Ad B) Experiments performed by Wilson and collaborators have demonstrated that after adenovirus- mediated gene transfer into immunocompetent animals, the expression of the transgene gradually decreases and disappears approximately 2 - 4 weeks post-infection 'Yang et al., 1994a, Yang et al , 1994b) This is caused by the development of a Cytotoxic T-Cell (CTL) response against the transduced cells . The CTLs were directed against adenovirus proteins expressed by the viral vectors . In the transduced cells synthesis of the adenovirus DNA-bmding protem (the E2A-gene product) , penton and fiber proteins (late-gene products) could be established. These adenovirus proteins, encoded by the viral vector, were expressed despite deletion of the El region. This demonstrates that deletion of the El region is not sufficient to completely prevent expression of the viral genes (Engelhardt et al. , 1994a). Ad C) Studies by Graham and collaborators have demonstrated that adenoviruses are capable of encapsidatmg DNA of up to 105% of the normal genome size (Bett et al . 1993) Larger genomes tend to be mstable resulting in loss of DNA sequences during propagation of the virus. Combining deletions m the El and E3 regions of tne virual genomes increases the maximmum size of the foreign that can be encapsidated to approx. 8.3 kb. In addition, some sequences of the E4 region appear to be dispensable for virus growth (adding another 1.8 kb to the maximum encapsidation capacity) Also the E2A region can be deleted from the vector, when the E2A gene product is provided in trans in the encapsidation cell line, adding another 1.6 k . It is, however, unlikely that the maximum capacity of foreign DNA can be significantly increased further than 12 kb. We developed a new strategy for the generation and production of helperfree-stocks of recombinant adenovirus vectors that can accomodate up to 38 kb of foreign DNA. Only two functional ITR sequences, and sequences that can function as an encapsidation signal need to be part of the vector genome. Such vectors are called minimal adenovectors . The helper functions for the minimal adenovectors are provided in trans by encapsidation defective-replication competent DNA molecules that contain all the viral genes encoding the required gene products , with the exception of those genes that are present in the host-cell genome, or genes that reside in the vector genome. The applications of the disclosed inventions are outlined below and will be illustrated in the experimental part, which is only intended for said purpose, and should not be used to reduce the scope of the present invention as understood by the person skilled in the art. Use of the IG packaging constructs Diploid cells . The constructs, in particular pIG.ElA.ElB, will be used to transfect diploid human cells, such as Human Embryonic Retinoblasts (HER), Human Embryonic Kidney cells (HEK) , and Human Embryonic Lung cells (HEL) . Transfected cells will be selected for transformed phenotype (focus formation) and tested for their ability to support propagation of El-deleted recombinant adenovirus, such as IG.Ad.MLPI .TK. Such cell lines will be used for the generation and (large-scale) production of El-deleted recombinant adenoviruses. Such cells, infected with recombinant adenovirus are also intended to be used I D in vivo as a local producer of recombinant adenovirus, e.g. for the treatment of solid tumors . 911 ceils are used for the titration, generation and production of recombinant adenovirus vectors (Fallaux et al., 1996). HER ceils transfected with pIG.ElA.ElB has resulted in 7 independent clones (called PER ceils). These clones are used for the production of El deleted (including non- overlapping adenovirus vectors) or El defective recombinant adenovirus vectors and provide the basis for introduction of e.g. E2B or E2A constructs (e.g. tsl25E2A, see below), Ξ4 etc., that will allow propagation of adenovirus vectors that have mutations m e.g. E2A or E4. In addition, diploid cells of otner species that are permissive for human adenovirus, such as the cotton rat (Sigmodon nispidus) (Pacini et al . , 1984), Syrian hamster (Moπn et al . , 1987) or chimpanzee (Levrero et al . , 1991), will be immortalized with these constructs. Such cells, infected with recombinant adenovirus, are also intended to be used in vivo for the local production of recombinant adenovirus, e.g. for the treatment of solid tumors. Established cells . The constructs, in particular pIG.ΞIA.NEO, can be used to trans ect established cells, e.g. A549 (human bronchial carcinoma), KB (oral carcinoma), MRC-5 (human diploid lung cell line) or GLC cell lines (small cell lung cancer) (de Leij et al. , 1985; Postmus et al. , 1988) and selected for NEO resistance. Individual colonies of resistant ceils are isolated and tested for their capacity to support propagation of El-deleted recombinant adenovirus, such as IG.Ad.MLPI .TK. When propagation of El deleted viruses on ElA containing cells is possible, such cells can be used for the generation and production of El-deleted recombinant adenovirus. Thev are also be used for the propagation of ElA deleted/ElB retained recombinant adenovirus . Established cells can also be co-transfected with pIG.ElA.ElB and pIG.NEO (or another NEO containing expression vector) Clones resistant to G418 are tested for their ability to support propagation of II deleted recombinant adenovirus, such as IG Ad.MLPI T" and used for the generation and production of El deleted recombinant adenovirus and will be applied m vivo for lccal production of recombinant virus, as describee for the diploid cells (see above) . All cell lines, including transformed diploid cell lines or NEO-resistant established lines, can be used as the basis for the generation of 'next generation' packaging cells lines, that support propagation of El-defective recombinant adenoviruses that a_so carry deletions in other genes, such as E2A and E4 Moreover, they will provide the basis for the generation of minimal adenovirus vectors as disclosed herein E2 expressing cell lines Packaging cells expressing E2A sequences are and will be used for the generation and (large scale) production of E2A-αeieteα recombinant adenovirus The newly generated human aoenovirus packaging cell lines or cell lines derived from species permissive for human adenovirus (E2A or tsl25E2A ElA + E2A ElA -r ElB - E2A ElA - E2A/tsl25, ElA -r ElB - E2A/tsl25) or non- permissive cell lines such as monkey cells (nrE2A or hr - 1 - tsl25E2A, ElA - hrE2A, ElA - ElB - hrE2A, ElA - hrE2A/tsl25, ElA - ElB - hrE2A/tsl25) are ano will be used for the generation and (large scale) production of E2A deleted recombinant adenovirus vectors In addition, they will be applied in vivo for local production of recombinant virus, as described for the diploid cells (see above) Novel adenovirus vectors . The newly developed adenovirus vectors narboπng an El deletion of nt. 459-3510 will be used for gene transfer purposes. These vectors are also the basis for the development of further deleted adenovirus vectors that are mutated for e.g. E2A, E2B or E4. Such vectors will _e generated e.g. on the newly developed packaging ceil lines described above (see 1-3). Minimal adenovirus packaging system We disclose adenovirus packaging constructs (to be used for the packaging of minimal adenovirus vectors may nave the following characteristics: a. the packaging construct replicates b. the packaging construct can not be packaged because the packaging signal is deleted c. the packaging construct contains an internal hairpm- forming sequence (see section 'Experimental, suggested hairpin' see Fig. 15) d. because of the internal hairpin structure, the packaging construct is duplicated, that is the DNA of the packaging construct becomes twice as long as it was before transfection into the packaging cell ( n our sample it duplicates from 35 kb to 70 KD ) . This duplication also prevents packaging. Note that this duplicated DNA molecule has ITR's at both termini (see e.g. Fig. 13) e. this duplicated packaging molecule is able to replicate like a ' normal adenovirus ' DNA molecule f. the duplication of the genome is a prerequisite for the production of sufficient levels of adenovirus proteins, required to package the minimal adenovirus vector g. the packaging construct has no overlapping sequences with the minimal vector or cellular sequences that may lead to generation of RCA by homologous recombination This packaging system will be used to produce minimal adenovirus vectors The advantages of minimal adenovirus vectors e g for gene therapy of vaccination purposes, are well known (accommodation of up to 38 kb,_ gutting of all potentially toxic and lmmunogenic adenovirus genes) Adenovirus vectors containing mutations in essential genes (including minimal adenovirus vectors) can also be propagated using this system. Use of intracellular E2 expressing vectors. Minimal adenovirus vectors are generated using the helper functions provided in trans by packaging-deficient replicating helper molecules The adenovirus-derived ITR sequences serve as origins of DNA replication in the presence of at least the E2-gene products. When the E2 gene products are expressed from genes in the vector genome (N.B the gene(s) must be driven by an El- mdependent promoter) , the vector genome can replicate in the target cells This will allow an significantly increased number of template molecules in the target cells, and, as a result an increased expression of the genes of interest encoded by the vector This is of particular interest for approaches of gene therapy in cancer Applications of intracellular amplification of linear DNA fragments . A similar approach could also be taken if amplification of linear DNA fragments is desired DNA fragments of known or unknown sequence could be amplified in cells containing the E2-gene products if at least one ITR sequence is located near or at its terminus There are no apparent constraints on the size of the rragment Even fragments much larger than the adenovirus genome (36 kb) should be amplified using this approach It is thus possible to clone large fragments in mammalian cells without either shuttling the fragment _nto bacteria (such as E coli) or use the polymerase chain reaction (P C R ) At the end stage of an productive adenovirus infection a single cell can contain over 100,000 copies of the viral genome In the optimal situation, the _mear DNA fragments can be ampl_fιed to similar levels Thus, one should be able to extract more than 5 μg of DNA rragment per 10 million ce_is (for a 35-kbp fragment) This system can be used to express heterologous proteins equivalent to the Simian Virus 40-based COS-cell system) ror research or for therapeutic purposes In addition, the system can be used to identify genes m large fragments of DNA Random DNA fragments may be amplified (after addition of ITRs) and expressed during mtracellular amplification Election or, selection of those cells with the oesired pnenotvpe can be used to enrich the fragment of interest and to isolate the gene EXPERIMENTAL Generation of cell lines able to transcomplement El defective recombinant adenovirus vectors . 1 911 cell line We have generated a cell line that harbors El sequences of adenovirus type 5, able to trans-complement El deleted recombinant adenovirus (Fal_aux et al , 1996) This cell line was obtained by transrection of human diploid human embryonic retinoblasts (HER) with pAd5XhoIC, that contains nt 80 - 5788 of Ad5 one of the resulting transformants was designated 911 This cell line has been shown to be very useful in the propagation of El defective recombinant adenovirus . It was found to be superior to the 293 cells. Unlike 293 cells, 911 cells lack a fully transformed pnenotvpe, which most likely is the cause of performing better as adenovirus packaging l ne: plaque assays can be performed faster (4 - 5 days instead of 8-14 days on 293) monolayers of 911 cells survive better under agar overlay as required for plaque assays higher amplification of El-deleted vectors In addition, unlike 293 cells that were transfected with sheared adenoviral DNA, 911 cells were transfected using a defined construct. Transfection efficiencies of 911 cells are comparable to those of 293 New packaging constructs . Source of adenovirus sequences . Adenovirus sequences are derived either from pAd5 SalB, containing nt. 80 - 9460 of human adenovirus type 5 (Bernards et al. , 1983) or from wild-type Ad5 DNA. pAd5.SalB was digested w th Sail and Xhol and the large fragment was religated and this new clone was named pAd5 X/S. The pTN construct (constructed by Dr. ? Vogels, IntrcGene, The Netherlands) was used as a source for the human PGK promoter and the NEO gene Human PGK promoter and NEO R gene, Transcription of ElA sequences in the new packaging constructs is driven by the human PGK promoter (Michelson et al , 1983; Singer-Sam et al . , 1984), derived from plasmid pTN (gift of R. Vogels), which uses pUC119 (Vieira and Messing, 1987) as a backbone This plasmid was also used as a source for NEO gene fused to the Hepatitis B Virus (HBV) poly-adenylation signal. Fusion of PGK promoter to El genes (Fig. 1) In order to replace the El sequences of Ad5 (ITR, origin of replication and packaging signal) by heterologous sequences we have amplified El sequences (nt.459 to nt. 960) of Ad5 by PCR, using primers Eai and Ea2 (see Table I). The resulting PCR product was digested with Clal and ligated into Bluescπpt (Stratagene) , predigested with Clal and EcoRV, resulting in construct pBS.PCRI. Vector pTN was digested with restriction enzymes EcoRI (partially) and Seal, and the DNA fragment containing the PGK promoter sequences was ligated into PBS PCRI digested with Seal and EcoRI . The resulting construct PBS.PGK. PCRI contains the human PGK promoter operatively linked to Ad5 El sequences from nt 459 to nt. 916. Construction of pIG . ElA.ElB .X (Fig. 2) pIG.ElA.ElB.X was made by replacing the Scal-BspEI fragment of pAT-X/S by the corresponding fragment from PBS PGK.PCRI (containing the PGK promoter linked to ElA sequences) pIG.ElA.ElB.X contains the ElA and ElB coding sequences under the direction of the PGK promoter As Ad5 sequences from nt.459 to nt 5788 are present in this construct, also pIX protein of adenovirus is encoded by this plasmid. Construction of pIG.ElA.NEO (Fig. 3) In order to introduce the complete ElB promoter and to fuse this promoter in such a way that the AUG codon of ElB 21 kD exactly functions as the AUG codon of NEO R , we amplified the ElB promoter using primers Ea3 and Ep2, where primer Ep2 introduces an Ncol site in the PCR fragment. The resulting PCR fragment, named PCRII, was digested with Hpal and Ncol and ligated into pAT-X/S, which was predigested with Hpal and with Ncol The resulting plasmid was designated pAT-X/S-PCR2. The Ncol - StuI fragment of pTN, containing the NEO gene and part of the Hepatitis B Virus (HBV) poly-adenylation signal, was cloned into pAT-X/S-PCR2 (digested with Ncol and Nrul) The resulting construct. pAT-PCR2-NEO. The poly- adenylation signal was completed by replacing the Scal- Sail fragment of pAT-PCR2-NEO by the corresponding fragment of pTN (resulting in pAT.PCR2.NEO.p(A) ) . The Seal - Xbal of pAT. PCR2.NEO.p (A) was replaced by the corresponding fragment of pIG.ElA.E1B-X, containing the PGK promoter linked to ElA genes The resulting construct was named pIG.ElA.NEO, and thus contains Ad5 El sequences (nt 459 to nt 1713) under the control of the human PGK promoter Construction of pIG.EIA.ElB (Fig. 4) pIG.ElA.ElB was made by amplifying the sequences encoding the N-terminal am o acids of ElB 55kd using primers Ebl and Eb2 (introduces a Xhol site) The resulting PCR fragment was digested with Bglll and cloned into Bglll/Nrul of pAT-X/S, thereby obtaining pAT-PCR3 pIG.EIA.ElB was constructed by introducing the HBV poly(A) sequences of pIG.ElA.NEO downstream of ElB sequences of pAT-PCR3 by exchange of Xbal - Sail fragment of pig.ElA. NEO and the Xbal Xhol fragment of pAT PCR3 pIG.EIA.ElB contains nt 459 to nt. 3510 of Ad5, that encode the ElA and ElB proteins The ElB sequences are terminated at the splice acceptor at nt.3511 No pIX sequences are present in this construct. Construction of pIG.NEO (Fig. 5) pIG NEO was generated by cloning the Hpal - Seal fragment of pIG.ElA.NEO, containing the NEO gene under the control of the Ad.5 ElB promoter, into pBS digested with EcoRV and Seal . This construct is of use when established cells are transfected with ElA.ElB constructs and NEO selection is required. Because NEO expression is directed by the ElB promoter, NEO resistant cells are expected to co-express ElA, which also is advantageous for maintaining high levels of expression of ElA during long-term culture of the cells Testing of constructs . The integrity of the constructs pIG.ElA.NEO, pIG.ElA.ElB.X and pIG.EIA.ElB was assessed by restriction enzyme mapping, furthermore, parts of the constructs that were obtained by PCR analysis were confirmed by sequence analysis No changes in the nucleotide sequence were found. The constructs were transfected into primary BRK (Baby Rat Kidney) cells and tested for their ability to immortalize (pIG.ElA.NEO) or fully transform (pAd5.XhoIC,pIG.EIA.ElB X and pIG.EIA.ElB) these cells Kidneys of 6-day old WAG-Rij rats were isolated, homogenized and trvpsmized. Subconfluent disnes (diameter 5 cm) of the BRK cell cultures were transfected with 1 or 5 μg of pIG NEO, pIG.ElA.NEO, pIG.EIA.ElB pIG.ElA.ElB .X, pAd5XhoIC, or with pIG.ElA.NEO together with PDC26 (Van der Elsen et al . , 1983), carrying the Ad5 ElB gene under control of the SV40 early promoter Three weeks post-transfection, when foci were visible, the dishes were fixed, Giemsa stained and the foci counted An overview of the generated adenovirus packaging constructs, and their ability to transform BRK, is presented m Fig. 6. The results indicate that the constructs pIG.EIA.ElB and pIG.ElA.ElB.X are able to transform BRK cells in a dose-dependent manner. The efficiency of transformation is similar fcr both constructs and is comparable to what was found with the construct that was used to make 911 cells, namely pAd5.XhoIC. As expected, pIG.ElA.NEO was hardly able to immortalize BRK. However, co-trans ection of an ElB expression construct (PDC26) did result m a significant increase of the number of transformants (18 versus 1), indicating that ElA encoded by pIG.ElA.NEO s functional. We conclude therefore, that tne newly generated packaging constructs are suited fcr the generation of new adenovirus packaging lines . Generation of cell lines with new packaging constructs Cell lines and cell culture Human A549 bronchial carcinoma cells Shapiro et al . , 1978), human embryonic retinoblasts (HER), Ad5-El- transfor-med human embryonic kidney (HEK) cells (293; Graham et al . , 1977) cells and Ad5-transformed HER cells (911, Fallaux et al, 1996)) and PER cells were grown in Dulbecco' s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Calf Serum (FCS) and antibiotics a 5% C02 atmospnere at 37°C. Cell culture media, reagents and sera were purchased from Gibeo Laboratories (Grand Island, NY) Culture plastics were purchased from Gremer (Nurtmgen, Germany) and Corning (Corning, NY) Viruses and virus techniques The construction of adenoviral vectors IG.Ad.MLP.nls .lacZ, IG.Ad.MLP . luc, IG.Ad.MLP.TK and IG.Ad.CMV TK is described n detail in patent application EP 95202213. The recombinant adenoviral vector IG.Ad.MLP nls .lacZ contains the E.coli lacZ gene, encoding β-gaiactosidase, under control of the Ad2 major late promoter (MLP) .IG.Ad.MLP.luc contains the firefly luciferase gene driven by the Ad2 MLP Adenoviral vectors IG Ad.MLP TK and IG.Ad.CMV.TK contain the Herpes Simplex Virus thymidine k ase (TK) gene under the control of the Ad2 MLP and the Cytomegalovirus (CMV) enhancer/promoter, respectively. Transfections All transfections were performed by caicium-pnosphate precipitation DNA (Graham and Van der Eb, 1973) with the GIBCO Calcium Phosphate Transfection System (GIBCO BRL Life Technologies Inc , Gaithersburg, USA), according to the manufacturers protocol. Western blotting Subconfluent cultures of exponentially growing 293,911 and Ad5-El-transformed A549 and PER cells were cashed with PBS and scraped in Fos-RIPA buffer (10 mM Tπs (pH 7,5), 150 mM NaCl, 1% NP40,01% sodium dodecyi sulphate 'SDS), 1% NA-DOC, 0,5 mM phenyl methyl sulphon fluoride PMSF), 0,5 mM tryps inhibitor, 50 mM NaF and 1 mM sodium vanadate). After 10 mm. at room temperature, lysates were cleared by centrifugation. Protein concentrations were measured with the Biorad protein assay kit, and 25 μg total cellular protein was loaded on a 12 5% SDS-PAA gel After electrophoresis, proteins were transferred to nitrocellulose (lh at 300 mA) Prestamed standards (Sigma, USA) were run in parallel Filters were blocked with 1% bovine serum albumin (BSA) n TBST (10 mM Tris, pH 8, 15 mM NaCl, and 0 05% Tween-20) for 1 hour. First antibodies were the mouse monoclonal antι-Ad5-ElB- 55-kDA antibody A1C6 (Zantema et al . , unpublished), the rat monoclonal antι-Ad5-ElB-221-kDa antibody C1G11 (Zantema et al . , 1985) . The second antibody was a horseradish peroxidase-labeled goat anti-mouse antibody (Promega) . Signals were visualized by enhanced chemolummescence (Amersham Corp, UK). Southern blot analysis High molecular weight DNA was isolated and 10 μg was digested to completion and fractionated on a 0.7% agarose gel. Southern blot transfer to Hybond N+ (Amersham, UK) was performed with a 0.4 M NAOH, 0.6 M NaCl transfer solution (Church and Gilbert, 1984) . Hybridization was performed with a 2463-nt Sspl-Hmdlll fragment from pAd5. SalB (Bernards et al . , 1983) This fragment consists of Ad5 bp. 342-2805. The fragment was radiolabeled with α- 32 P-dCTP with the use of random hexanucleotide primers and Klenow DNA polymerase. The southern blots were exposed to a Kodak XAR-5 film at -80°C and to a Phospho-Imager screen which was analyzed by B&L systems Molecular Dynamics software. A549 Ad5-El-transformed A549 human bronchial carcinoma cell lines were generated by transfection with pIG.ElA.NEO and selection for G418 resistance. Thirty-one G418 resistant clones were established. Co-transfection of pIG.EIA.ElB with pIG.NEO yielded seven G418 resistant ceil lines . PER Ad5-El-transformed human embryonic retina (HER) cells were generated by transfection of primery HER cells with plasmid pIG.EIA.ElB. Transformed cell lines were established from well-separated foci. We were able to establish seven clonal cell lines, which we called PER.C1, PER.C3, PER.C4, PER.C5, PER.C6, PER.C8 and PER.C9. One of the PER clones, namely PER.C6, has been deposited at the ECACC under number 96022940. Expression of Ad5 ElA and ElB genes in transformed A549 and PER cells Expression of the Ad5 ElA and the 55-kDa and 21 kDa ElB proteins in the established A549 and PER cells was studied by means of Western blotting, with the use of monoclonal antibodies (mAb) . Mab M73 recognizes the ElA products, whereas Mabls AIC6 and ClGii are directed against the 55-kDa and 21 kDa ElB proteins, respectively The antibodies did not recognize proteins in extracts from the parental A549 or the primary HER cells (data not shown) . None of the A549 clones that were generated by co-transfection of pIG.NEO and pIG.EIA.ElB expressed detectable levels of ElA or ElB proteins (not shown) . Some of the A549 clones that were generated by transfection with pIG.ElA.NEO expressed the Ad5 ElA proteins (Fig. 7), but the levels were much lower than those detected in protein lysates from 293 cells. The steady state ElA levels detected in protein extracts from PER cells were much higher than those detected m extracts from A549- derived ceils All PER cell lines expressed similar levels of ElA proteins (Fig. 7) . The expression of the ElB proteins particularly in the case of ElB 55 kDa, was mote variable Compared to 911 and 293, the majority of the PER clones express high levels of ElB 55 kDa and 21 kDa The steady state level of ElB 21 kDa was the highest n PER.C3 None of the PER clones lost expression of the Ad5 El genes upon serial passage of the cells (not shown). We found that the level of El expression m PER cells remained stable for at least 100 population doublings. We decided to characterize the PER clones in more detail . Southern analysis of PER clones To study the arrangement of the Ad5-El encoding sequences in the PER clones we performed Southern analyses. Cellular DNA was extracted from all PER clones, and from 293 and 911 cells. The DNA was digested with Hindlll, which cuts once m the Ad5 El region. Southern hybridization on Hindlll-digested DNA, using a radiolaoeled Ad5-El-specific probe revealed the presence of several integrated copies of pIG.EIA.ElB the genome of the PER clones . Figure 8 shows the distribution pattern of El sequences in the high molecular weignt DNA of the different PER cell lines. The copies are concentrated in a single band, which suggests that they are integrated as tandem repeats. In the case of PER.C3, C5, 15 and C9 we found additional hybridizing bands of low molecular weight that indicate the presence of truncated copies of pIG.EIA.ElB. The number of copies was determined with the use of a Phospho-Imager. We estimated that PΞR.C1, C3 , C4 , C5, Cβ C8 and C9 contain 2, 88, 5,4, 5, 5 and 3 copies of the Ac5 El coding region, respectively, and that 911 and 293 cells contain 1 and 4 copies of the Ad5 Ξl sequences, respectively. Transfection efficiency Recombinant adenovectors are generated by co- transfection of adaptor plasmids and the large Clal fragment of Ad5 into 293 cells (gee patent application EP 952C2213). The recombinant virus DNA is formed by homologous recombination between the homologous viral sequences that are present in the plasmid and the adenovirus DNA. The efficacy of this method, as well as that cf alternative strategies, s highly dependent on the transfectability of the helper cells. Therefore, we compared the transfection efficiencies of some of the PER clones with 911 cells, using the E.coli β-galactosidase-encodmg lacZ gene as a reporter (Fig. 9). Production of recombinant adenovirus Yields of recombinant adenovirus obtained after inoculation of 293, 911, PER.C3, PER.C5 and PER.C6 with different adenovirus vectors are presented m Table II. The results indicate that the yields obtained on PER cells are at least as high as those obtained on the existing cell lines . In addition, the yields of the novel adenovirus vector IG.Ad.MLPI .TK are similar or higher than the yields obtained for the other viral vectors on all cell lines tested. Generation of new adenovirus vectors (Fig. 10) . The used recombinant adenovirus vectors (see patent application on EP 95202213) are deleted for El sequences from 459 to nt. 3328 As construct pElA. ElB contains Ad5 sequences 459 to nt. 3510 there is a sequence overlap of 183 nt. between ElB sequences in the packaging construct pIG.EIA.ElB and recombinant adenoviruses, sucn as e.g. IG.Ad.MLP. K. The overlapping sequences were deleted from the new adenovirus vectors In addition, non-coding sequences derived from lacZ, that are present in the original contructs, were deleted as well. This was achieved (see Fig. 10) by PCR amplification of the SV40 poly(A) sequences from pMLP.TK using primers SV40-1 (introduces a BamHI site) and SV40-2 (introduces a Bglll site) . In addition, Ad5 sequences present in this construct were amplified from nt 2496 (Ad5, introduces a Bglll site) to nt. 2779 (Ad5-2). Both PCR fragments were digested with Bglll and were ligated. The ligation product was PCR amplified using primers SV40-1 and Ad5-2. The PCR product obtained was cut with BamHI and Aflll and was ligated into pMLP.TK predigested with the same enzymes. The resulting construct, named pMLPI.TK, contains a deletion in adenovirus El sequences from nt 459 to nt 3510. Packaging system The combination of the new packaging- construct pIG.EIA.ElB and the recombinant adenovirus pMLPI.TK, which do not have any sequence overlap, are presented Fig. 11. In this figure, also the original situation is presented, where the sequence overlap is indicated. The absence or overlapping sequences between pIG.EIA.ElB and pMLPI TK (Fig 11a) excludes the possibility of homologous recombination between packaging construct and recombinant virus, and is therefore a significant improvement for production of recombinant adenovirus as compared to the original situation. In Fig lib the situation is depicted for pIG.ElA.NEO and IG.Ad.MLPI TK. pIG.ElA.NEO when transfected into established cells, s expected to be sufficient to support propagation of El-deleted recombinant adenovirus This combination does not have any sequence overlap, preventing generation of RCA by homologous recombination. In addition, this convenient packaging system allows the propagation of recombinant adenoviruses that are deleted just for ElA sequences and not for ElB sequences. Recombinant adenoviruses expressing ElB m the absence of ElA are attractive, as the ElB protein, in particular ElB 19kD, is able to prevent infected human cells from lysis by Tumor Necrosis Factor (TNF) (Good g et al , 1991) Generation of recombinant adenovirus derived from pMLPI.TK. Recombinant adenovirus was generated by co¬ transfection of 293 cells with Sail linearized pMLPI.TK DNA and Clal linearized Ad5 wt DNA. The procedure is schematically represented in Fig. 12. Outline of the strategy to generate packaging systems for minimal adenovirus vector Name convention of the plasmids used: p plasmid I ITR (Adenovirus Inverted Terminal Repeat) C Cytomegalovirus (CMV) Enhancer/Promoter Combination L Firefly Luciferase Coding Sequence hachaw Potential hairpin that can be formed after digestion with restriction endonuclease Asp718 in its correct and in the. reverse orientation, respectively (Fig. 15) Eg. pICLhaw is a plasmid that contains the adenovirus ITR followed by the CMV-dπven luciferase gene and the Asp718 hairpin the reverse (non-functional) orientation. 1.1 Demonstration of the competence of a synthetic DNA sequence, that is capable of forming a hairpin- structure, to serve as a primer for reverse strand synthesis for the generation of double-stranded DNA molecules in cells that contain and express adenovirus genes . Plasmids pICLhac, pICLhaw, pICLI and pICL were generated using standard techniques. The schematic representation of these plasmids is shown in Figs. 16-19. Plasmid pICL is derived from the following plasmids : nt.l - 457 pMLPIO (Levrero et al. , 1991) nt.458 - 1218 pCMVβ (Clontech, EMBL Bank No. U02451) nt.1219 - 3016 pMLP. luc (IntroGene, unpublished) nt.3017 - 5620 pBLCAT5 (Stem and Whelan, 1989) The plasmid has been constructed as follows : The tet gene of plasmid pMLPIO has been inactivated by deletion of the BamHI-Sail fragment, to generate pMLPlOΔSB. Using primer set PCR/MLPl and PCR/MLP3 a 210 bp fragment containing the Ad5-ITR, flanked by a synthetic Sail restriction site was amplified using pMLPIO DNA as the template. The PCR product was digested with the enzymes EcoRI and SgrAI to generate a 196 bp. fragment. Plasmid pMLPlOΔSB was digested with EcoRI and SgrAI to remove the ITR. This fragment was replaced by the EcoRI- SgrAI-treated PCR fragment to generate pMLP/SAL. Plasmid pCMV-Luc was digested with PvuII to completion and recirculated to remove the SV40-derived poly-adenylation signal and Ad5 sequences with exception of the Ad5 left-terminus. In the resulting plasmid, pCMV-lucΔAd, the Ad5 ITR was replaced by the Sal-site-flanked ITR from plasmid pMLP/SAL by exchanging the Xmnl-SacII fragments. The resulting plasmid, pCMV-lucΔAd/SAL, the Ad5 left terminus and the CMV-driven luciferase gene were isolated as an Sall-Smal fragment and inserted in the Sail and Hpal digested plasmid pBLCATS, to form plasmid pICL. Plasmid pICL is represented in Fig 19; its sequence is presented in Fiσ. 20. Plasmid pICL contains the following features nt. 1-457 Ad5 left terminus (Sequence 1-457 of human adenovirus type 5) nt. 458-969 Human cytomegalovirus enhancer and immediate early promoter (Boshart et al . , 1985) (from plasmid pCMVβ, Clontech, Palo Alto, USA) nt. 970-1204 SV40 19S exon and truncated 16/19S intron (from plasmid pCMVβ) nt. 1218-2987 Firefly luciferase gene (from pMLP.luc) nt. 3018-3131 SV40 tandem poly-adenylation signals from late transcript, derived from p asmid pBLCAT5) nt 3132-5620 pUC12 backbone (derived from plasmid pBLCA 5) nt. 4337-5191 β-lactamase gene (Amp-resistence gene, reverse orientation) Plasmid pICLhac and pICLhaw Plasmids pICLhac and pICLhaw were derived from plasmid pICL by digestion of the latter plasmid with the restriction enzyme Asp718 The linearized plasmid was treated with Calf-Intestine Alkaline Phosphatase to remove the 51 phoshate groups. The partially complementary synthetic single-stranded oligonucleotide Hp/aspi en Hp/asp2 were annealed and phosphorylated on their 5 ' ends using T4-polynucleotιde kmase. The phosporylated double-stranded oligomers were mixed with the dephosporylated pICL fragment and ligated. Clones containing a single copy of the synthetic oligonucleotide inserted into the plasmid were isolated and characterized using restriction enzyme digests Insertion of the oligonucleotide into the Asp718 site will at one junction recreate an Asp718 recognition site, whereas at the other junction the recognitionsite will be disrupted. The orientation and the integrity of the inserted oligonucleotide was verified in selected clones b- sequence analyses. A clone containing the oligonucleotide n the correct orientation (the Asp718 site close to the 3205 EcoRI site) was denoted pICLhac. A clone with the oligonucleotide in the reverse orientation (the Asp718 site close to the SV40 derived poly signal) was designated pICLhaw Plasmids pICLhac and pICLhaw are represented in Figs 16 and 17 Plasmid pICLI was created from plasmid pICL by insertion of the Sall-SgrAI fragment rrom pICL, containing the Ad5-ITR into the Asp718 site of pICL. The 194 bp Sall- SgrAI fragment was isolated from pICL, and the cohesive ends were converted to blunt ends using E.coli DNA polymerase I (Klenow fragment) and dNTP ' s . The Asp718 cohesive ends were converted to blunt ends by treatment with mungbean nuclease. By ligation clones were generated that contain the ITR n the Asp718 site of plasmid pICL. A clone that contained the ITR fragment in the correct orientation was designated pICLI (Fig. 18). Generation of adenovirus Ad-CMV-hcTK. Recombinant adenovirus was constructed according to the method described in Patent application 95202213. Two components are required to generate a recombinant adenovirus First, an adaptor-plasmid containing the left terminus of the adenovirus genome containing the ITR and the packaging signal, an expression cassette with the gene of interest, and a portion of the adenovirus genome which can be used for homologous recombination. In addition, adenovirus DNA is needed for recombination with the aforementioned adaptor plasmid In the case of Ad-CMV-hcTK, the plasmid PCMV.TK was used as a basis This plasmid contains nt 1-455 of the adenovirus type 5 genome, nt. 456-1204 derived from pCMVβ (Clontech, the Pstl-StuI fragment that contains the CMV enhancer promoter and the 16S/19Ξ tron from Simian Virus 40) the Herpes Simplex Virus thymidme kmase gene (described in Patent application 95202213), the SV40-derιved polyaoenylation signal (nt 2533-2668 of the SV40 sequence) , followed by the Bglll-Scal fragment of Ad5 (nt. 3328-6092 of the Ad5 sequence). These fragments are present in a pMLPIO-derived (Levrero et al . , 1991) backbone. To generate plasmid pAD-CMVhc-TK, piasmid pCMV.TK was digested with Clal (the unique Clal-s te is located ust upstream of the TK open readmgframe) and dephosphorylated with Calf-Intestine Alkaline Phosphate. To generate a hairpin-structure, the synthetic oligonucleotides HP/cla2 and HP/cla2 were annealed and phopsphorylated on their 5 ' -OH groups with T4- polynucleotide kmase and ATP The double-stranded oligonucleotide was ligated with the linearized vector fragment and used to transform E coli strain "Sure" Insetion of the oligonucleotide into the Clal site will disrupt the Clal recognition sites In the oligonucleotide contains a new Clal site near one of its termini In selected clones, the orientation and the megπty of the inserted oligonucleotide was verified by_sequence analyses A clone containing the oligonucleotide in the correct orientation (the Clal site at the ITR side) was denoted pAd-CMV-hcTK This plasmid was co-transfected with Clal digested wild-type Adenovirus-typeS DNA into 911 cells A. recombinant adenovirus in wnich the CMV-hcTK expression cassette replaces the El sequences was isolated and propagated using standard procedures To study whether the hairpin can be used as a primer for reverse strand synthesis on the displaced strand after replication had started at the ITR, the plasmid pICLhac is introduced into 911 cells (human embryonic retinoblasts transformed with the adenovirus El region) The plasmid pICLhaw serves as a control, which contains the oligonucleotide pair HP/asp 1 and 2 n the reverse orientation but is further completely identical to plasmid pICLhac Also included in these studies are plasmids pICLI and pICL In the plasmid pICLI the hairpin is replaced by an adenovirus ITR Plasmid pICL contains neither a hairpin nor an ITR sequence These plasmids serve as controls to determine the efficiency of replication by virtue of the terminal-hairpin structure To provide the viral products other than the El proteins (these are produced by the 911 cells) required for DNA replication the cultures are infected with the virus IG Ad MLPI TK after transfection Several parameters are being studied to demonstrate proper replication of the transfected DNA molecules First, DNA extracted from the cell cultures transfected with aforementioned plasmids and infected with IG Ad MLPI TK virus is being analyzed by Southern blotting for the presence of the expected replication intermediates, as well as for the presence of the duplicated genomes . Furthermore, from the transfected and IG.Ad.MLPI .TK infected cell populations virus is isolated, that is capable to transfer and express a luciferase marker gene into luciferase negative cells. Plasmid DNA of plasmids pICLhac, pICLhaw, pICLI and pICL have been digested with restriction endonuclease Sail and treated with mungbean nuclease to remove the 4 nucleotide single-stranded extension of the resulting DNA fragment. In this manner a natural adenovirus 5 ' ITR terminus on the DNA fragment is created. Subsequently, both tne pICLhac and pICLhaw plasmids were digested with restriction endonuclease Asp718 to generate tne terminus capable of forming a hairpin structure. The digested plasmids are introduced into 911 cells, using the standard calcium phosphate co-precipitation technique, four dishes for each plasmid. During the transfection, for each plasmid two of the cultures are infected with the IG.Ad.MLPI.TK virus using 5 infectious IG. d.MLPI .TK particles per cell. At twenty-hours post-transfection and fort hours post-transfection one Ad. tk-v rus- fected and one unmfected culture are used to isolate small molecuiar-weignt DNA using the procedure devised by Hir . Aliquots of isolated DNA are used for Southern analysis. After digestion of the samples with restriction endonuclease EcoRI using the luciferase gene as a probe a hybridizing fragment of approx. 2.6kb is detected only in the samples from the adenovirus infected ceils transfected with plasmid pICLhac. The size of this fragment is consistent with the anticipated duplication of the luciferase marker gene. This supports the conclusions that the inserted hairpin is capable to serve as a primer for reverse strand synthesis. The hybridizing fragment is absent f the IG.Ad.MLPI.TK virus is omitted, or if the hairpin oligonucleotide has been inserted in the reverse orientation. The restriction endonuclease Dpnl recognizes the tetranucleotide sequence 5'-GATC-3', but cleaves only methylated DNA, (that is, only (plasmid) DNA propagated in, and derived, from E.col , not DNA that has been replicated m mammalian cells) The restriction endonuclease Mbol recognizes the same sequences, but cleaves only unmethylated DNA (viz. DNA propagated m mammalian cells). DNA samples isolated from the transfected cells are incubated with Mbol and Dpnl and analysed with Southern blots These results demonstrate that only in the cells transfected with the pICLhac and the pICLI plasmids large Dpnl-resistant fragments are present, that are absent in the Mbol treated samples These data demonstrate that only after transfection of plasmids pICLI and pICLhac replication and duplication of the fragments occur These data demonstrate that in -adenovirus-infected cells linear DNA fragments that have on one terminus an adenovirus-derived inverted terminal repeat (ITR) and at the other terminus a nucleotide sequence that can anneal to sequences on the same strand, when present in single- stranded form thereby generate a hairpin structure, and will be converted to structures that have inverted terminal repeat sequences on both ends The resulting DNA molecules will replicate by the same mechanism as the wild type adenovirus genomes . 1 2 Demonstration that the DNA molecules that contain a luciferase marker gene, a single copy of the ITR, the encapsidation signal and a synthetic DNA sequence, that is capable of forming a hairpin structure, are sufficient to generate DNA molecules that can be encapsidated into virions. To demonstrate that the above DNA molecules containing two copies of the CMV-luc marker gene can be encapsidated into virions, virus is harvested from the remaining two cultures via three cycles of freeze-thaw crushing and is used to infect murme fibroblasts Forty- eight hours after infection the infected cells are assayed for luciferase activity To exclude the possibility that the luciferase activity has been induced by transfer of free DNA, rather than via virus particles, virus stocks are treated with DNasel to remove DNA contaminants Furthermore, as an additional control, aliquots of the virus stocks are incubated for 60 minutes at 56°C The neat treatment will not affect the contaminating DNA, but will inactivate the viruses Significant luciferase activity is only found in the cells after infection with the virus stocks derived from IG Ad MLPI TK-infected cells transfected with the pICLhc and pICLI plasmids Neither in the non-infected cells, nor in the infected cells transfected with the pICLhw and pICL significant luciferase activity can be demonstrated Heat mactivation, but not DNasel treatment, completely eliminates luciferase expression, demonstrating that adenovirus particles and not free (contaminating) DNA fragments are responsible for transfer of the luciferase reporter gene These results demonstrate that these small viral genomes can be encapsidated into adenovirus particles and suggest that the ITR and the encapsidation signal are sufficient for encapsidation of linear DNA fragments into adenovirus particles These adenovirus particles can be used for efficient gene transfer When introduced into cells that contain ano express at least part of the adenovirus genes (viz El, E2 E4 , and L, and VA) , recombinant DNA molecules that consist of at least one ITR, at least part of the encapsidation signal as well as a synthetic DNA sequence, that is capable of forming a hairpin structure, have the intrinsic capacity to autonomously generate recombinant genomes which can be encapsidated into virions Such genomes and vector system can be used for gene transfer 1.3 Demonstration that DNA molecules which contain nucleotides 3510 - 35953 (viz. 9.7 - 100 map units) of the adenovirus type 5 genome (thus lack the El protein-coding regions, the right-hand ITR and the encapsidation sequences) and a terminal DNA sequence that is complementary to a portion of the same strand of the DNA molecule when present in single-stranded form other than the ITR, and as a result is capable of forming a hairpin structure, can replicate in 911 ceils. In order to develop a replicating DNA molecule that can provide the adenovirus products required to allow the above mentioned ICLhac vector genome and alike minimal adenovectors to be encapsidated into adenovirus particles by nelper cells, the Ad-CMV-hcTK adenoviral vector has been developed. Between the CMV enhancer/promoter region and the thvmidme kmase gene the annealed oligonucleotide pair HP/cla 1 and 2 is inserted. The vector Ad-CMV-hcTK can be propagated and produced in 911 cell using standard procedures . This vector is grown and propagated exclusively as a source of DNA used fcr transfection. DNA of the adenovirus Ad-CMV-hcTK is isolated from virus particles that had been purified using CsCl density- gradient centnfugation by standard techniques . The virus DNA has been digested with restriction endonuclease Clal . The digested DNA is size-fractionated on an 0 7% agarose gel and the large fragment is isolated and used for further experiments. Cultures of 911 ceils are transfected large Clal-fragment of the Ad-CMV-hcTK DNA using the standard calcium phosphate co-precipitation technique. Much like in the previous experiments with plasmid pICLhac, the AD-CMV-hc will replicate starting at the right-hand ITR. Once the 1-strand is displaced, a hairpm can be formed at the left-hand terminus of the fragment. This facilitates the DNA polymerase to elongate the chain towards the rignt-hand-side. The process will proceed until the displaced strand is completely converted to its double-stranded form. Finally, the right-nand ITR will be recreated, and in this location the normal adenovirus replication-initiation and elongation will occur. Note that the polymerase will read through the nairpm, thereby duplicating the molecule The input DNA molecule of 33250 bp, that had on one side an adenovirus ITR sequence and at the other side a DNA sequence that had the capacity to form a nairpm structure, has now been duplicated, in a way that both ends contain an ITR sequence The resulting DNA molecule will consist of a palindromic structure of approximately 66500 bp This structure can be detected low-molecular weight DNA extracted from the transfected cells using Southern analysis. The palindromic nature of the DNA fragment can be demonstrated by digestion of the low- molecular weight DNA with suitable restriction endonucleases and Southern blotting with the HSV-TK gene as the probe This molecule can replicate itself in the transfected cells by virtue of the aoeno τ -ιrus gene products that are present in the cells In part, the adenovirus genes are expressed from templates that are integrated in the genome of the target ceils (viz the El gene products), the other genes reside the replicating DNA fragment itself. Note however, that this linear DNA fragment cannot be encapsidated into • 'lrions Not only does it _acκ all the DNA sequences required for encapsidation, but also is its size mucn too large to be endapsioated. 1.4 Demonstration that DNA molecules which contain nucleotides 3503 - 35953 (viz. 9 7 - 100 map units) of the adenovirus type 5 genome (thus lacκ the Ξl protein-coding regions the right-hand ITR and the encapsidation sequences ) and a terminal DNA sequence tnat is complementary to a portion the same strand of the DNA molecu e other than the ITR, and as a result is capable of forming a hairpin structure, can replicate in 911 cells and can provide the helper functions required to encapsioate the pICLI and pICLhac derived DNA fragments The next series of experiments aim to demonstrate that the DNA molecule described in part 1.3 could be used to encapsidate the minimal adenovectors described in part 1.1 and 1.2. In the experiments the large fragment isolated after endonuclease Clal-digestion of Ad-CMV-hcTK DNA is introduced into 911 cells (conform the experiments described m part 1 3) together with endonuclease Sail, mungbean nuclease, endonuclease Asp718-treated plasmid pICLhac, or as a control similarly treated plasmid pICLhaw After 48 hours virus is isolated by freeze-thaw crushing of the transfected cell population The irus- preparation is treated with DNasel to remove contaminating free DNA. The virus is used subsequently to infect Rat2 fibroblasts . Forty-eight hours post infection the cells are assayed for luciferase activity Only in tne cells infected with virus isolated from the cells transfected with the pICLhac plasmid, and not with the pICLhaw plasmid, significant luciferase activity can oe demonstrated. Heatmactivation of the virus prior to infection completely abolishes the luciferase activity, indicating that the luciferase gene is transferred by a "iral particle. Infection of 911 cell with the virus stock did not result in any cytopathological effects, demonstrating that the pICLhac is produced without any infectious helper virus that can be propagated on 911 cells These results demonstrate that the proposed method can be used to produce stocks of minimal-adenoviral - τ ectors, that are completely devoid of infectious helper " ruses that are able to replicate autonomously on adenovirus-transformed human cells or on non-adenovirus transformed human cells. Besides the system described in this application, another approach for the generation of minimal adenovirus "ectors has been disclosed in WO 94/12649 The method described in WO 94/12649 exploits the function of the protein IX for the packaging of minimal adenovirus vectors (Pseudo Adenoviral Vectors (PAV) m the terminology of WO 94/12649) PAVs are produced by cloning an expression plasmid with the gene of interest between the left-hand (including the sequences required for encapsidation) and the right-hand adenoviral ITRs The PAV is propagated in the presence of a helper virus Encapsidation of the PAV is preferred compared the helper virus because the helper virus is partially defective for packaging (Either by virtue of mutations in the packaging signal or by virtue of its size (virus genomes greater than 37 5 kb package inefficiently) In addition, the authors propose that in the absence of the protein IX gene the PAV will be preferentially packaged However, neither of these mechanisms appear to be sufficiently restrictive to allow packaging of only PAVs/mmimal vectors The mutations proposed in the packaging signal dimmish packaging, but do not provide an absolute block as the same packaging- activity is required to propagate the helper virus Also neither an increase n the size of the helper virus nor the mutation of the protein IX gene will ensure that PAV is packaged exclusively Thus, the method described in WO 94/12649 is unlikely to be useful for the production of helper-free stocks of minimal adenovirus veσtors/PAVs References Berk, A. 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Table I Primers used for PCR amplification of DNA fragments used for generation of constructs described in this patent application. Ea-l CGTGTAGTGTAT TATACCCG PCR amplification Ad5 nt459 -> Ea-2 TCGTCACTGGGTGGAAAGCCA PCR amplif cation Ad5 nt960 <- Ea-3 TACCCGCCGTCCTAAAATGGC ntl2S4-13Q4 of Ad5 genome Ea-5 TGGACTTGAGCTGTAAACGC ntl514-1533 of Ad5 genome Ep-2 GCCT____t___AGGTCAGATGT ntl721-1702 of Ad5 ; mtroαuction of Ncol site Eb-1 3CTTGAGCCCGAGACATGTC nt3269-3289 of Ad5 genome Eb-2 _CC ____L___CTCAATCTGTATCTT nt3508-3496 of Ad5 genome; introduction of xhol site SV40- 1 GGG____J__C.GAACTTGTTTATTGCAGC Introduction 3amHI site (nt2182-2199 of pM P.TK) adaption of ecombinant adenoviruses SV40-2 GGGAGATCTAGACATGATAAGATAC Introduction Bglll site (nt2312-2297 of pMLP.TK) Ad5-1 GGGAG.-.TCTGTACTGAAATGTGTGGGC Introduction Bglll site ;nt2496-2514 cf pMLP.TK; Ad5-_ 3GAGGCTGCAGTCTCCAACGGCGT nt27 " 9-2756 cf PMLP.TK ITR1 GGGGGATCCTCAAATCGTCACTTCCGT nt3573 "7 -35757 of Ad5 (introduction of BamHI site; ITR2 GGGGTCTAGACATCATCAATAATATAC nt35935-35919 of Ad5 ( mtroαuction of Xbal site) PCR primers sets to be used to create the Sail and Asp71! sites juxtaposed to the ITR sequences. PCR/MLPl GGCGAATTCGTCGACATCATCAATAATATACC (Ad5 nt. 10-18) PCR/MLP2 GGCGAATTCGGTACCATCATCAATAATATACC (Ad5 nt. 10-18) PCR/MLP3 CTGTGTACACCGGCGCA (Ad5 nt.200-184) Synthetic oligonucleotide pair used to generate a synthetic hairpin, recreates an Asp718 site at one of the termini if inserted in Asp718 site: HP/aspl 5' -GTACACTGACCTAGTGCCGCCCGGGCAAAGCCCGGGCGGCACTAGGTCAG HP/asp2 5 ' -GTACCTGACCTAGTGCCGCCCGGGCTTTGCCCGGGCGGCACTAGGTCAGT Synthetic oligonucleotide pair used to generate a synthetic nairpin, contains the Clal recognition site to be used fcr hairpin formation. HP/clal 5 ' -GTACATTGACCTAGTGCCGCCCGGGCAAAGCCCGGGCGGCACTAGGTCAATCGAT HP/cla2 5 ' -3TACATCGATTGACCTAGTGCCGCCCGGGCTTTGCCCGGGCGGCACTAGGTCAAT TABLE II SO Yields x 10 8 pfu TI75 flask. Table II Yields ol different recombinant adenoviiuses obtained aflei inoculation of adenoviitis El packaging cell lines 293, 91 1 , PER C3, PER C and PER.C6 The yields are the mean of two dilfeient expeiiments. IG Λd.CMV lacZ and IG.Ad CMV.TK aie desci ibcd in patent applicalion EP 95 20 221 3 The constiuction oNG Ad MLPI TK is desciibcd in this patent application. Yields of virus pei T80 flask were delei mined by plaque assay on 91 1 cells, as described [ Eallaux, 1996 # 1493] O

Claims: CLAIMS 1. A recombinant nucleic acid molecule based on or derived from an adenovirus having at least a functional encapsidat g signal and at least one functional Inverted Terminal Repeat or a functional fragment or derivative thereof and having no overlapping sequences which allow for homologous recombination leading to replication competent virus in a cell into which it is transferred 2. A recombinant nucleic acid molecule according to claim 1 being in a linear form and comprising an Inverted Terminal Repeat at or near both termini. 3 A recombinant nucleic acid molecule according to claim 1 being in a linear and essentially single stranded form and comprising at the 3 ' terminus a sequence complementary to an upstream part of the same stranα of said nucleic acid molecule, said sequence being capable of base-pairing with saiα part in a way to be able to function as a start-site for a nucleic acid polymerase 4 A recombinant nucleic acid molecule according to claim 3, comprising all aαenovirus derived genetic information necessary for replication, except for a functional encapsidation signal 5 A recombinant nucleic acid molecule derived from tne nucleic acid molecule according to claim 4 resulting from the action of a nucleic acid polymerase on said nucleic acid molecule according to claim 4 6 A recombinant nucleic acid molecule according to claim 5 having an Inverted Terminal Repeat at both termini 7 A recombinant nucleic acid molecule according to anyone of the aforegoing claims comprising a host range mutation. 8 A recombinant nucleic acid molecule according to anyone of the aforegoing claims comprising a mutated E2 region rendering at least one of its products temperature sensitive. 9. A recombinant nucleic acid molecule according to anyone of the aforegoing claims comprising an E2 region under the control of an inducible promoter 10. A packaging cell for packaging adenovirus derived nucleic acid molecules, which packaging cell has been provided with one or more recombinant nucleic acid molecules which provide said cell .-/lth the aoility to express adenoviral gene products derived from at least the ElA region. 11. A packaging cell for packaging adenovirus derived nucleic acid molecules, which packaging cell has been proviαeα with one or more recombinant nucleic acid molecules which provide said cell .vith the ability to express adenoviral gene products derived from at least both the ElA and the E2A region. 12. A packaging cell according to claim 11, wnerein the recompinant nucleic acid molecule encoding the E2A region is under control of an ducible promoter 13. A packaging cell according to claim 11 or 12, wherein the recombinant nucleic acid molecule encoding the E2A region is mutated so that at least one of its products is temperature sensitive 14 -. cell according to anyone of claims 10-13, which does not have the aoility to express ElB products 15 A cell according to claim 14 , wherein the genetic information encoding ElB products is not present. 16 - cell according to claim 10, further comprising the region coding for ElB. 17 A cell according to claim 10, further comprising a marker gene 18 - cell according to claim 17, whereby the marker gene is under control of the ElB responsive promoter 19 A packaging cell harbouring nucleotides 80-5788 of the human Adenovirus 5 genome. 20. A packaging cell harbouring nucleotides 459-1713 of the human Adenovirus 5 genome. 21. A packaging cell harbouring nucleotides 459-3510 of the human Adenovirus 5 genome. 22. A ceil according to anyone of claims 10-13, which does not have the ability to express tne 21kD ElB product. 23. A cell according to claim 22, wnerein the genetic information encoding the 21kD ElB product is not present 24. A cell according to anyone of claims 10-23 which is a diploid cell 25. A ceil according to anyone of claims 10-24 which is of non-human origin. 26 A ce l according to anyone of claims 10-25 which is of monkey origin 27 A cell according to claim 19 as deposited under no. 95062101 at the ECACC 28. A recombinant nucleic acid molecu_e according to anyone of claims 1-9 being a DNA molecule. 29. A recomoinant nucleic acid molecu_e based on or derived from an adenovirus, having at least a deletion of nucleotides 459-3510 of the El region 30 A recomoinant nucleic acid molecu_e based on or derived from an adenovirus , having a αeletion of nucleotides 459-l 7 13 of the El region 31 An adenovirus-like particle comprising a recombinant nucleic acid molecule according to anyone of claims 1-9 32. A cell comprising a recombinant nucleic acid molecule according to anyone of claims 1-9 33. A recomDinant nucleic acid according to claims 1-3, comprising functional E2A end E2B genes or functional fragments or derivatives thereof under control of an ElA independent promoter. 34. A cell according to claim 26 which comprises a host range mutated E2A region of an adenovirus 35 A method for intracellular amplif cation comprising the steps of providing a cell with a linear DNA fragment to be amplified, which fragment is prc"ided with at least a functional part or derivative of an Inverted Terminal Repeat at one terminus and providing said cell with functional E2 derived products necessary for replication of said fragment and allowing said fragment to be acted upon by a DNA polymerase. 36. A method according to claim 35 whereby the cell is provided with genetic material encoding both Ξ2A and E2B products . 37 A method according to claim 35 or 36 wnereby a hairpin-like structure is provided at the terminus of the DNA fragment opposite the Inverted Terminal Repeat.

Inventors: BOUT ABRAHAM, FALLAUX FRITS JACOBUS, HOEBEN ROBERT CORNELIS, VALERIO DOMENICO, VAN DER EB ALEX JAN, BOUT, ABRAHAM, FALLAUX, FRITS, JACOBUS, HOEBEN, ROBERT, CORNELIS, VALERIO, DOMENICO, VAN DER EB, ALEX, JAN
Applicants: BOUT ABRAHAM, EB ALEX JAN V D, FALLAUX FRITS JACOBUS, HOEBEN ROBERT CORNELIS, INTROGENE BV, UNIV LEIDEN, VALERIO DOMENICO, BOUT, ABRAHAM, FALLAUX, FRITS, JACOBUS, HOEBEN, ROBERT, CORNELIS, INTROGENE B.V., RIJKSUNIVERSITEIT LEIDEN, VALERIO, DOMENICO, VAN DER EB, ALEX, JAN
Application year: 1996
Main classification: C12N15
IPC codes: A61K35, A61K48, C12N5, C12N7, C12N15