ASSAY FOR IDENTIFYING INHIBITORS OF THE INTERACTION BETWEEN PROTEINS p53 AND dm2

Abstract: The present invention concerns a new assay which allows the identification of compounds which inhibit the formation of complexes between a product of the double minute 2 gene ("dm2") and p53 but not between p53 and DNA. Both the complex formation of labeled DNA, C-terminally truncated p53 and dm2 and disruption of dm2 from the labeled DNA-p53 complex by an inhibitor of an p53-dm2 interaction can be detected by a gel shift assay procedure. This assay permits the selection of compounds which, besides their inhibitory property, do not alter p53 specific DNA binding and do not disturb p53 conformation required for DNA binding or formation of active tetramer.

Description: - 1 - ASSAY FOR IDENTIFYING INHIBITORS OF THE INTERACTION BETWEEN PROTEINS P53 ANO DM2 The present invention relates to an assay for testing inhibitors of the interaction between proteins p53 and hdm2. The protein encoded by the human double minute 2 gene, hdm2, forms a complex with the tumor suppressor gene product p53 both in vitro and in vivo. In some human cancers hdm2 is overexpressed and binds most of the cellular p53. Formation of this complex is favoring nucleoplasmic transformation since the complexed p53 looses the tumor suppressor activity. Compounds which prevent the interaction between p53 and hdm2 will release p53, promoting its tumor suppression activity within these cancerous cells. Similar results could also be obtained with animal cancer cells, e.g. in mouse. The mouse homologue to hdm2 is mdm2. To search for inhibitors of p53 - hdm2 interaction, a high throughput primary binding assay, for example ELISA, can be used to select compounds and to initiate a medicinal chemistry program. However, assays which can be used for such a primary screening of p53-hdm2 binding have the disadvantage that artefacts may occur, i.e. wrong positive reaction can be obtained because of artefactual results due to the chemical properties of the tested substances. In addition, compounds which inhibit the interaction between p53 and hdm2 can also alter p53 specific DNA binding, which is a totally undesired effect because DNA binding is a prerequisite of p53 tumor suppressor activity. For example, p53 is sensible to several chemical agents that inhibit its activity. The main criteria of activity of p53 is the DNA binding which reveals that the protein is properly folded and not aggregated or unfolded. Compounds which like metal chelators precipitate p53 might be considered as true inhibitors of the p53 - hdm2 interaction in a classical binding assay because the precipitated p53 cannot form complexes. Therefore, additional testing of the impact of the substance on p53-DNA binding is important because compounds inhibiting p53-DNA binding are not good candidates for therapeutic uses. However, in a high through put assay it is not possible to test whether a compound which inhibits p53-hdm2 interaction prevents p53 specific DNA binding or disturbs the p53 conformation so that p53 can no more fulfill the desired biological function. To avoid these two problems and to start a chemistry program based on more relevant lead compounds, the use of a good confirming assay is crucial. A confirming assay according to the present invention could, for example, be a gel shift assay. A gel shift of a p53-DNA complex in an agarose gel after incubation with adeno-virus E1 B protein is described in Yew et al. [Genes & Dev. 8, 190-202, 1994]. In Wang et al. [PNAS 91 , 2230-2234, 1994] the detection of the binding of HB virus X protein to p53 by measuring the inhibition of p53-DNA binding is described. However, none of the prior art publications describes an assay in which the DNA binding property of p53 remains if p53 is complexed with a double minute 2 protein. So far, all the in vitro assays described in the literature to study the interaction between p53 and hdm2 are immunoprecipitation assays for testing the binding of hdm2 to p53 [Leng et al. , Oncogene 1 0: 1 275(1 995)]. None of these assays simultaneously show that hdm2 binds to p53 and does not disturb its specific DNA binding. In the present invention it was surprisingly found that p53-DNA binding is maintained after complex formation with hdm2 and that it is possible to measure in one and the same reliable assay the effect of a substance on both the p53-hdm2 and p53-DNA binding. Object of the invention It is the object of the invention to provide a reliable test method for compounds which inhibit the formation of complexes between hdm2 and p53 but which do not inhibit binding of DNA to p53 or disturb the p53 conformation so that p53 can no more fulfill the desired biological function. Summary of the invention The present invention concerns a new assay which allows the identification of compounds which inhibit the formation of complexes between a product of the double minute 2 gene ("dm2"), for example human hdm2 or mouse mdm2, and p53 but not between p53 and DNA. Both the complex formation of labeled DNA, C-terminally truncated p53 and dm2 and disruption of dm2 from the labeled DNA-p53 complex by an inhibitor of the p53-dm2 interaction can be detected by a gel shift assay procedure. This assay permits the selection of compounds which, besides their inhibitory property, do not alter p53 specific DNA binding and do not disturb p53 conformation required for DNA binding or formation of active tetramer. The invention further concerns a test kit for testing the effect of a substance on the binding of a dm2 protein to p53, comprising (a) a p53 or functional equivalent thereof having DNA-binding, oligomerisation and hdm2-binding properties, (b) a hdm2 or functional equivalent thereof having the p53 binding domain, and (c) a DNA sequence specifically binding to the p53 binding domain. Detailed description of the invention The present invention concerns a test method for a substance inhibiting the formation of a complex between p53 and a product of the double minute 2 gene ("dm2"), for example human (h)dm2 or mouse (m)dm2, while not inhibiting the formation of a complex between p53 and DNA. The method comprises measuring complex formation in a mixture of p53, dm2 and DNA binding to p53 in the presence and in the absence of a substance to be tested. In the presence of the desired property of the tested substance, a complex between p53 and DNA is formed ("double complex"), while in the absence of the desired property either a complex between p53, DNA and dm2 ("triple complex"; if no inhibiting activity is present) or no complex (if the tested compound inhibits both the dm2-p53 and p53-DNA complex formation or if the tested substance destroys the p53 conformation so that it is no more DNA binding) is foimed. While any method being able to discriminate between the different conditions (triple complex, double complex, no complex) is suitable for performing the present assay, in a preferred embodiment of the invention the assay performed is a gel shift assay. Thus, the test system essentially comprises a p53, a dm2, and DNA. While the use of the human proteins or active variants thereof is most preferred, the invention is not limited to the use of the human proteins. The corresponding proteins from other species can also be used, e.g. from mouse. However, it is preferred that both the p53 and dm2 protein used in the assay originate from the same species. For performing the present invention, a p53 protein must be used which both is able to bind DNA and dm2. p53 according to the present invention can be a recombinant form of p53 or purified from the original organism. It is, however, not necessary to use a full length p53 for performing the present invention. Accordingly, the p53 form used herein also means any useful variant or fragment of p53, preferentially of human p53. The features of such a useful variant or fragment are clear from the description hereinafter. For DNA binding, p53 must be able to form tetrameric complexes. Consequently, for DNA binding both an active p53 DNA binding domain (e.g. residues 102 - 292 of p53) and a p53 functional oligomerisation domain (e.g. residues 325 - 356 of p53) must be present in the p53 form used in the present invention. For improving DNA binding properties of p53, the protein can be activated by interaction with a specific antibody (for example the monoclonal antibody Pab421 known in the art which binds to the amino acid stretch between amino acid 372 and 380 of the human p53), phosphorylation by kinases (casein kinase II phosphorylating Ser392 of human p53 or protein kinase C phosphorylating Ser 370 and Ser 375 of human p53) or, more preferably, truncation of its C-terminus (deletion of maximal 38 amino acids of the C- terminus of the natural p53 sequence). An example for the latter is p53D30, i.e. natural p53 lacking the C-terminal 30 amino acids, used in the Examples hereinafter. In another embodiment of the invention, a p53-DNA complex for studying inhibitors of dm2-p53 interaction can also be obtained by the use of high affinity binding DNA elements (like the RGC and the BC sequences described in Kern et al., Science 252:1708, 1991 , and Halazonetis et al., EMBO J 12:1021 , 1993, respectively). p53 can be directly purified from various sources (for example from bacteria, baculovirus or mammalian cells). For being able to form complexes with hdm2, a human p53 suitable for use in the present invention contains residues 1 to 52 of the natural p53 sequence, more preferentially residues: 18 to 23, even more preferentially residues 19, 22 and 23. The concentration of p53 which is preferentially used in the present invention depends on the amount of dm2 used in the assay. Normally, a five fold excess of dm2 protein is used. A very clear signal in detection of radioactive label is obtained with about 50 to 100 ng of p53D30. However, it is also possible to use higher amounts if it is possible to tolerate in the test assay that some of the proteins precipitate. A drr>2 protein for use in the present invention can be recombinant or purified from the original organism. A dm2 protein for use in the present invention can be either the full length form or a truncated form or any hybrid protein which contains the minimal p53 binding domain of the dm2. dm2 in context with the present invention means preferentially a dm2 from the same species as the p53 used in the assay is derived from. In particular, if human p53 is used, a human dm2 (hdm2) or analogue thereof containing the minimal p53 binding domain is used, and if mouse p53 is used, a mouse dm2 (mdm2) or analogue thereof containing the minimal p53 binding domain is used. For hdm2, the region from residue 1 to residue 102 of the natural sequence is identified so far as minimal p53 binding domain. For example, in an embodiment of the invention a fusion protein consisting of the N-terminal 188 amino acids of hdm2 (comprising the p53 binding domain) and the full length glutathione S-transferase from Schistosoma japonicum prepared in the Examples (named herein G-M fusion protein) can be used for the assay. The fusion protein is obtainable by expressing the DNA encoding the N- terminal 188 amino acids of hdm2 in the expression vector pGEX-2T (Pharmacia). The DNA element of the test system can be any DNA fragment which specifically binds to p53, e.g. such containing a p53 binding element degenerated or not. It can be a synthetic oligonucleotide, a DNA fragment isolated from living organisms or a DNA element inserted in a plasmid. The optimal p53 to hdm2 ratio may vary depending on the purity and specific binding activity of the used proteins and, thus, should be determined for each protein variant used. In the case that a gel shift assay is performed, the DNA element should be such that a DNA band can be detected which shifts in the gel when the DNA is incubated with p53. For detection, the DNA element can be either radiolabeled or possibly labeled by a non radioactive method. For obtaining a satisfactory detection signal, p53 should be satured with DNA. For -10 example, the K D of full length p53 activated by antibody Pab421 is about 5x10 M For 50 ng p53D30 used in the Examples, 0.1 to 0.5 pmole of DNA should be sufficient. For gel shift assay, the gel can be an agarose gel or, preferably, a native polyacrylamide gel, preferably such having 4 to 5 % acrylamide. The buffer can be any buffer in which p53 is active for specific DNA binding since the complex p53 - DNA is less stable than the p53 - hdm2 complex. Preferred buffers are HEPES in a concentration of 20 to 50 mM or buffered Tris solution in a concentration of 10 to 50 mM. In a preferred embodiment the pH of the buffer is 7.1 to 8.0. In a preferred embodiment of the invention a salt is present in the buffer. If a salt is used, it should preferentially be KCl at 50 to 100 mM or NaCl at 50 to 175 mM. Moreover, the buffer can optionally contain a substance selected from Glycerol (up to 20 %), DTT (up to 0.5 mM), MgCI 2 (e.g. about 6 mM), ZnSO 4 (e.g. about 0.1 . mM), ZnOAc (e.g. about 0.1 mM), detergent NP40 (up to 0.1 %), Triton X-100 (up to 0.1 %), bovine serum albumin (up to 1 mg/ml), EDTA (up to 1 mM), and a competitor DNA, e.g. poly dl-dC, poly dA- dT or salmon sperm DNA, e.g. in a concentration of 25 to 100 μg/ml. The invention further concerns a test kit for testing the effect of a substance on the binding of a dm2 protein to p53, said test kit essentially comprising (a) a p53 or functional equivalent thereof having DNA-binding, oligomerisation and hdm2-binding properties, (b) a hdm2 or functional equivalent thereof having the p53 binding domain, and (c) a DNA sequence specifically binding to the p53 binding domain. The preferred ingredients of the test kit are as above. The test kit optionally contains instructions for its use. The following examples are illustrative, however, should not be construed to limit the present invention. Examples A) Material Molecular biology reactants are purchased from Promega except the Pfu polymerase which is obtained from Stratagene, the pGEX-2T vector from Pharmacia Biotech and the pET-3a vector from Novagen. Immunologicals are purchased from Oncogene Science. Polydeoxyinosinic-deoxycytidylic acid is obtained from Sigma and [33p]γ- adenosine triphosphate (ATP) from Amersham. The synthetic oligonucleotides are purchased in a purified and desalted form from Microsynth. All other chemicals are from Merck. Bl Molecular biology The DNA region of the hdm2 gene encoding the first 188 amino acids of the protein is obtained by Polymerase Chain Reaction (PCR) amplification of the hdm2 gene. The oligonucleotides used for PCR are designed such that a BamHI restriction site is introduced at the 5' extremity of the gene and an EcoRI restriction site at its 3' end (see hdm2 primer I and II with SEQ ID Nos 8 and 9, respectively). The PCR fragments digested by BamHI and EcoRI are ligated with a BamHI / EcoRI cleaved pGEX-2T vector. The resulting vector comprises a fusion gene consisting of the full length sequence of glutathione-S-transferase of S. japonicum, a linker sequence, and the N- terminal 188 amino acids of hdm2, in the 5' to 3' order. The complete gene is sequenced on both strands and the recombinant plasmid is introduced into E. coli strain BL21 (Novagen). Glutathione-S-transferase protein (for control experiments) was obtained from E. coli strain BL21 (Novagen) transformed with pGEX-2T plasmid. The human wild type p53 gene is used as a template for PCR to obtain the gene fragment encoding for residues 1 to 362 of the 392 amino acids of natural p53 (p53D30). The oligonucleotides used for PCR are designed such that a Ndel restriction site is introduced at the 5' end and a BamHI site at the 3' end (see p53D30 primer I and II with SEQ ID Nos 10 and 11 , respectively). The PCR fragments digested by Ndel and BamHI are ligated with a Ndel / BamHI cleaved pET-3a plasmid. The complete gene is sequenced and the expression plasmid is introduced into E. coli strain BL21 (DE3)pLysS (Novagen). C) Protein expression For protein expression bacteria cultures are inoculated by a 100-fold diluted overnight culture and grown in Luria Broth medium in the presence of 100 μg ampicillin / ml at 37 °C to ODβøo = 0.8. The cultures are then cooled on ice to room temperature, induced with 1 mM isopropyl-D-thiogalactopyranoside and grown for four additional hours at 27 °C. The cells are then harvested by centrifugation and the pellets flash frozen in liquid nitrogen and stored at -70 °C. D) Purification of the hdm2 fusion protein and of the glutathione S-transferase protein The cell pellets containing the glutathione S-transferase fusion protein of hdm2 (named "G-M" in the following) are resuspended in ice cold buffer A (0.5 M NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 1.8 mM KH2PO4, 1 mM ethylenediaminetetraacetic acid (EDTA), 10 mM 2-mercaptoethanol, 1 mM phenylmethanesulfonylfluoride (PMSF) - pH = 7.3) and lysed with a French press at 1000 psi. After centrifugation, the soluble fraction is loaded onto a Glutathione Sepharose 4B column (Pharmacia Biotech) preequilibrated at 4 °C with buffer A. The G-M fusion protein is then eluted with buffer B (50 mM Tris(hydroxymethyl)-aminomethane (Tris-HCl), 10 mM reduced glutathione, 0.5 M NaCl, 1 mM EDTA, 1 mM PMSF, 10 mM 2-mercaptoethanol - pH = 8.0). The fractions containing the protein are identified by SDS-PAGE (sodium dodecyl sulfate polyacryalmide gel electrophoresis), pooled and desalted on a Sephadex G25 column (Pharmacia Biotech) which is preequilibrated at 4 °C with buffer C (50 mM Tris. HCI, 50 mM NaCl, 20 % (v/v) glycerol, 10 mM 2-mercaptoethanol, 0.1 % (v/v) Triton X-100 - pH = 7.6) . The protein solution is loaded onto a Mono Q column (Pharmacia Biotech), preequilibrated with buffer C at 4 °C, and the fusion protein eluted with a linear gradient of buffer C containing 1 M NaCl. The fractions containing the purified G-M protein are pooled, concentrated (Centricon 30 - Amicon) to 1 mg / ml, flash frozen in liquid nitrogen and stored at -70 °C. The glutathione S-transferase protein (named "G" in the following) is purified in the same procedure except that the purification is stopped after the Glutathione Sepharose 4B column due to the high purity of the material obtained after this step. E) Purification of p53D30 protein The cell pellets containing the p53D30 protein are resuspended in ice cold buffer D (50 mM 4-(2-hydroxyethyl)-piperazine-ethane-sulfonic acid (Hepes. NaOH), 10 % (v/v) glycerol, 0.1 mM EDTA, 0.1 % (v/v) Triton X-100, 5 mM 1 ,4-dithio-DL-threitol (DTT), 1 mM PMSF - pH = 7.6) and lysed with a French press at 1000 psi. After centrifugation, the soluble fraction is loaded onto a HiTrap Heparin column (Pharmacia Biotech) preequilibrated at 4 °C with buffer D. The column is first washed with buffer D containing 22 % buffer E (50 mM Hepes.NaOH, 1 M KCl, 10 % (v/v) glycerol - pH = 7.6) and p53D30 is eluted with a linear gradient to 100 % buffer E. The fractions containing p53D30 are pooled and loaded onto a HiTrap metal chelation column (Pharmacia Biotech) charged with nickel and preequilibrated at 4 °C with buffer F (50 mM Hepes.NaOH, 0.5 M KCl, 10 % (v/v) glycerol - pH = 7.6). After washing the column with buffer F containing 20 % buffer G (50 mM Hepes.NaOH, 0.5 M KCl, 10 % (v/v) glycerol, 0.1 M immidazole - pH = 7.6), p53D30 is eluted with 45 % buffer G. 50 mM 2-mercaptoethanol and 1 mM ZnCl2 are added to the solution and the protein is dialysed at 4 °C against 50 mM Hepes.NaOH, 0.5 M KCl, 20 % (v/v) glycerol, 50 mM 2-mercaptoethanol, 1 mM ZnCl2 - pH = 7.6. p53D30 is concentrated to 1 mg / ml (Amicon 30 kDa cut off membrane), flash frozen in liquid nitrogen and stored at - 70 °C. F) Protein analysis The purity of the protein preparation is evaluated by gel scanning (Schimadzu CS- 930) on a SDS-PAGE (Laemmli, U.K. (1970) Nature, 227, 680-385) stained with Coomassie blue. Protein concentration is determined according to Bradford, M.B. (1976) Anal. Biochem., 72, 248-254). Gl Peptide synthesis Peptide A (Ac-SQETFSDLWKL) shown in SEQ ID No. 5 is assembled on a Milligen 9050 automated peptide synthesizer (continuos flow) by solid - phase peptide synthesis using the fluorenylmethoxycarbonyl (Fmoc) strategy on Fmoc - MBHA - PAL - PEG amid resin. Side - chain protection of a-Fmoc amino acids is as follows: Asp(O- fe/ /obutyloxycarbonyl), Gln(Trt), Glu(O-tertiobutyloxycarbonyl), Lys (butyloxycarbonyl), Ser(tert/obutyl), Trp(butyloxycarbonyl), Thr(tert/ ' obutyl). The a-Fmoc amino acids (3 equivalents) are incorporated using the respective trichlorophenyl esters. Each coupling step is followed by an end - capping step (Ac2θ / pyridine in dimethyl formamide). After completion of the chain assembly, the dried peptide resin is treated with 76 % (v/v) trifluroacetic acid (TFA) / 20 % (v/v) EDT / 4 % (v/v) water at 30 °C in order to cleave the peptide from the resin and to deblock the side - chain protection. After 3 h incubation, the resin is separated by filtration and the peptide precipitated in cold (0 °C) terf-butyl-methyl ether. The crude peptide is collected by centrifugation and purified by preparative reversed - phase medium - pressure liquid chromatography using a Vydac C-| 8 column (acetonitrile - water gradient containing 0.1 % (v/v) TFA) to yield the final product. The purity and the correct mass of the peptide is verified by analytical reversed - phase high pressure liquid chromatography, FABMS and matrix - assisted laser desorption ionisation time - of - flight mass spectrometry. To the determine Peptide A concentration in solution, the peptide is dissolved in 50 mM Tris. HCI - pH = 7.6 and incubated for 10 min at 37 °C. The solution is extensively mixed and incubated for 15 min on ice. The insoluble fraction is eliminated by centrifugation at 13000 rpm for 10 min and the peptide concentration is determined by spectrophotometry at 280 nm using a molecular extinction coefficient of 5690. H Gel shift assay Oligonucleotides I and II (SEQ ID Nos. 6 and 7, respectively) containing the 20-mer p53 consensus DNA binding site and Hindlll-compatible ends are hybridised and 5' end-labelled with [ 33 P]γ- ATP as described in Maniatis, T., Fritsch, E F. and Sambrook, J. (1989) Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory, New York. A 20 μl reaction volume containing 50 mM Tris. HCI, 50 mM NaCl, 5 % (v/v) glycerol, 0.1 % (v/v) Triton X-100, 10 mM DTT and 50 μg / ml polydeoxyinosinic-deoxycytidylic acid - pH = 7.6 (binding buffer) are incubated for 30 min at 22 °C in the presence of the indicated amounts of p53D30, of radiolabelled oligonucleotides and of the mentioned monoclonal antibodies. Reactions are loaded onto a native 4 % polyacrylamide gel containing 0.5 x Tris. HCI - boric acid - pH = 8.0 which had undergone pre-electrophoresis at 200 V for 45 min at 4 °C. Electrophoresis is continued at 200 V from 90 to 120 min at 4 °C. Gels are dried prior exposure to X-ray film (Amersham Hyperfilm-MP). To perform the p53D30 - G-M - DNA ternary complex both proteins and the radiolabeled DNA are incubated in binding buffer for 30 min at 22 °C and the gel is proceeded as described previously. SEQUENCE LISTING (1) GENERAL INFORMATION: (i) APPLICANT: (A) NAME: CIBA-GEIGY AG (B) STREET: Kly eckstr. 141 (C) CITY: Basel <E) COUNTRY: Switzerland (F) POSTAL CODE (ZIP) : 4002 (G) TELEPHONE: +41 61 69 11 11 (H) TELEFAX: + 41 61 696 79 76 (I) TELEX: 962 991 (ii) TITLE OF INVENTION: Assay (iii) NUMBER OF SEQUENCES: 11 (iv) COMPUTER READABLE FORM: (A) MEDIUM TYPE: Floppy disk (B) COMPUTER: IBM PC coπpatible (C) OPERATING SYSTEM: PC-DOS/MS-DOS (D) SOFTWARE: Patentin Release #1.0, Version #1.30 (EPO) (2) INFORMATION FOR SEQ ID NO: 1: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 1098 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA ( ix ) FEATURE : (A) NAME/KEY: CDS (B) LOCATIONS..1089 (D) OTHER INFORMATION: /product= "Residue 1 to 362 of human p53 protein (named p53D30)" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1: CAT ATG GAG GAG CCG CAG TCA GAT CCT AGC GTC GAG CCC CCT CTG AGT 48 Met Glu Glu Pro Gin Ser Asp Pro Ser Val Glu Pro Pro Leu Ser 1 5 10 15 CAG GAA ACA TTT TCA GAC CTA TGG AAA CTA CTT CCT GAA AAC AAC GTT 96 Gin Glu Thr Phe Ser Asp Leu Trp Lys Leu Leu Pro Glu Asn Asn Val 20 25 30 CTG TCC CCC TTG CCG TCC CAA GCA ATG GAT GAT TTG ATG CTG TCC CCG 144 Leu Ser Pro Leu Pro Ser Gin Ala Met Asp Asp Leu Met Leu Ser Pro 35 40 45 GAC GAT ATT GAA CAA TGG TTC ACT GAA GAC CCA GGT CCA GAT GAA GCT 192 Asp Asp Ile Glu Gin Trp Phe Thr Glu Asp Pro Gly Pro Asp Glu Ala 50 55 60 CCC AGA ATG CCA GAG GCT GCT CCC CCC GTG GCC CCT GCA CCA GCA GCT 240 Pro Arg Met Pro Glu Ala Ala Pro Pro Val Ala Pro Ala Pro Ala Ala 65 70 75 CCT ACA CCG GCG GCC CCT GCA CCA GCC CCC TCC TGG CCC CTG TCA TCT 288 Pro Thr Pro Ala Ala Pro Ala Pro Ala Pro Ser Trp Pro Leu Ser Ser 80 85 90 95 TCT GTC CCT TCC CAG AAA ACC TAC CAG GGC AGC TAC GGT TTC CGT CTG 336 Ser Val Pro Ser Gin Lys Thr Tyr Gin Gly Ser Tyr Gly Phe Arg Leu 100 105 110 GGC TTC TTG CAT TCT GGG ACA GCC AAG TCT GTG ACT TGC ACG TAC TCC 384 Gly Phe Leu His Ser Gly Thr Ala Lys Ser Val Thr Cys Thr Tyr Ser 115 120 125 CCT GCC CTC AAC AAG ATG TTT TGC CAA CTG GCC AAG ACC TGC CCT GTG 432 Pro Ala Leu Asn Lys Met Phe Cys Gin Leu Ala Lys Thr Cys Pro Val 130 135 140 CAG CTG TGG GTT GAT TCC ACA CCC CCG CCC GGC ACC CGC GTC CGC GCC 480 Gin Leu Trp Val Asp Ser Thr Pro Pro Pro Gly Thr Arg Val Arg Ala 145 150 155 ATG GCC ATC TAC AAG CAG TCA CAG CAC ATG ACG GAG GTT GTG AGG CGC 528 Met Ala He Tyr Lys Gin Ser Gin His Met Thr Glu Val Val Arg Arg 160 165 170 175 TGC CCC CAC CAT GAG CGC TGC TCA GAT AGC GAT GGT CTG GCC CCT CCT 576 Cys Pro His His Glu Arg Cys Ser Asp Ser Asp Gly Leu Ala Pro Pro 180 185 190 CAG CAT CTT ATC CGA GTG GAA GGA AAT TTG CGT GTG GAG TAT TTG GAT 624 Gin His Leu Ile Arg Val Glu Gly Asn Leu Arg Val Glu Tyr Leu Asp 195 200 205 GAC AGA AAC ACT TTT CGA CAT AGT GTG GTG GTG CCC TAT GAG CCG CCT 672 Asp Arg Asn Thr Phe Arg His Ser Val Val Val Pro Tyr Glu Pro Pro 210 215 220 GAG GTT GGC TCT GAC TGT ACC ACC ATC CAC TAC AAC TAC ATG TGT AAC 720 Glu Val Gly Ser Asp Cys Thr Thr Ile His Tyr Asn Tyr Met Cys Asn 225 230 235 AGT TCC TGC ATG GGC GGC ATG AAC CGG AGG CCC ATC CTC ACC ATC ATC 768 Ser Ser Cys Met Gly Gly Met Asn Arg Arg Pro Ile Leu Thr Ile Ile 240 245 250 255 ACA CTG GAA GAC TCC AGT GGT AAT CTA CTG GGA CGG AAC AGC TTT GAG 816 Thr Leu Glu Asp Ser Ser Gly Asn Leu Leu Gly Arg Asn Ser Phe Glu 260 265 270 GTG CGT GTT TGT GCC TGT CCT GGG AGA GAC CGG CGC ACA GAG GAA GAG 864 Val Arg Val Cys Ala Cys Pro Gly Arg Asp Arg Arg Thr Glu Glu Glu 275 280 285 AAT CTC CGC AAG AAA GGG GAG CCT CAC CAC GAG CTG CCC CCA GGG AGC 912 Asn Leu Arg Lys Lys Gly Glu Pro His His Glu Leu Pro Pro Gly Ser 290 295 300 ACT AAG CGA GCA CTG CCC AAC AAC ACC AGC TCC TCT CCC CAG CCA AAG 960 Thr Lys Arg Ala Leu Pro Asn Asn Thr Ser Ser Ser Pro Gin Pro Lys 305 310 315 AAG AAA CCA CTG GAT GGA GAA TAT TTC ACC CTT CAG ATC CGT GGG CGT 1008 Lys Lys Pro Leu Asp Gly Glu Tyr Phe Thr Leu Gin Ile Arg Gly Arg 320 325 330 335 GAG CGC TTC GAG ATG TTC CGA GAG CTG AAT GAG GCC TTG GAA CTC AAG 1056 Glu Arg Phe Glu Met Phe Arg Glu Leu Asn Glu Ala Leu Glu Leu Lys 340 345 350 GAT GCC CAG GCT GGG AAG GAG CCA GGG GGG AGC TGAGGATCC 1098 Asp Ala Gin Ala Gly Lys Glu Pro Gly Gly Ser 355 360 (2) INFORMATION FOR SEQ ID NO: 2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 362 amino acids (B) TYPE: amino acid (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2: Met Glu Glu Pro Gin Ser Asp Pro Ser Val Glu Pro Pro Leu Ser Gin 1 5 10 15 Glu Thr Phe Ser Asp Leu Trp Lys Leu Leu Pro Glu Asn Asn Val Leu 20 25 30 Ser Pro Leu Pro Ser Gin Ala Met Asp Asp Leu Met Leu Ser Pro Asp 35 40 45 Asp Ile Glu Gin Trp Phe Thr Glu Asp Pro Gly Pro Asp Glu Ala Pro 50 55 60 Arg Met Pro Glu Ala Ala Pro Pro Val Ala Pro Ala Pro Ala Ala Pro 65 70 75 80 Thr Pro Ala Ala Pro Ala Pro Ala Pro Ser Trp Pro Leu Ser Ser Ser 85 90 95 Val Pro Ser Gin Lys Thr Tyr Gin Gly Ser Tyr Gly Phe Arg Leu Gly 100 105 110 Phe Leu His Ser Gly Thr Ala Lys Ser Val Thr Cys Thr Tyr Ser Pro 115 120 125 Ala Leu Asn Lys Met Phe Cys Gin Leu Ala Lys Thr Cys Pro Val Gin 130 135 140 Leu Trp Val Asp Ser Thr Pro Pro Pro Gly Thr Arg Val Arg Ala Met 145 150 155 160 Ala Ile Tyr Lys Gin Ser Gin His Met Thr Glu Val Val Arg Arg Cys 165 170 175 Pro His His Glu Arg Cys Ser Asp Ser Asp Gly Leu Ala Pro Pro Gin 180 185 190 His Leu Ile Arg Val Glu Gly Asn Leu Arg Val Glu Tyr Leu Asp Asp 195 200 205 Arg Asn Thr Phe Arg His Ser Val Val Val Pro Tyr Glu Pro Pro Glu 210 215 220 Val Gly Ser Asp Cys Thr Thr Ile His Tyr Asn Tyr Met Cys Asn Ser 225 230 235 240 Ser Cys Met Gly Gly Met Asn Arg Arg Pro Ile Leu Thr Ile Ile Thr 245 250 255 Leu Glu Asp Ser Ser Gly Asn Leu Leu Gly Arg Asn Ser Phe Glu Val 260 265 270 Arg Val Cys Ala Cys Pro Gly Arg Asp Arg Arg Thr Glu Glu Glu Asn 275 280 285 Leu Arg Lys Lys Gly Glu Pro His His Glu Leu Pro Pro Gly Ser Thr 290 295 300 Lys Arg Ala Leu Pro Asn Asn Thr Ser Ser Ser Pro Gin Pro Lys Lys 305 310 315 320 Lys Pro Leu Asp Gly Glu Tyr Phe Thr Leu Gin Ile Arg Gly Arg Glu 325 330 335 Arg Phe Glu Met Phe Arg Glu Leu Aεn Glu Ala Leu Glu Leu Lys Asp 340 345 350 Ala Gin Ala Gly Lys Glu Pro Gly Gly Ser 355 360 (2) INFORMATION FOR SEQ ID NO: 3: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 729 base pairs - 18 - (B) TYPE: nucleic acid (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: (A) NAME/KEY: CDS (B) LOCATION:84..647 (D) OTHER INFORMATION: /product= "N-terminal 188 amino acids of human double minute protein 2" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3: TAGCATGGCC TTTGCAGGGC TGGCAAGCCA CGTTTGGTGG TGGCGACCAT CCTCCAAAAT 60 CGGATCTGGT TCCGCGTGGA TCC ATG TGC AAT ACC AAC ATG TCT GTA CCT 110 Met Cys Asn Thr Asn Met Ser Val Pro 365 370 ACT GAT GGT GCT GTA ACC ACC TCA CAG ATT CCA GCT TCG GAA CAA GAG 158 Thr Asp Gly Ala Val Thr Thr Ser Gin Ile Pro Ala Ser Glu Gin Glu 375 380 385 ACC CTG GTT AGA CCA AAG CCA TTG CTT TTG AAG TTA TTA AAG TCT GTT 206 Thr Leu Val Arg Pro Lys Pro Leu Leu Leu Lys Leu Leu Lys Ser Val 390 395 400 GGT GCA CAA AAA GAC ACT TAT ACT ATG AAA GAG GTT CTT TTT TAT CTT 254 Gly Ala Gin Lys Asp Thr Tyr Thr Met Lys Glu Val Leu Phe Tyr Leu 405 410 415 GGC CAG TAT ATT ATG ACT AAA CGA TTA TAT GAT GAG AAG CAA CAA CAT 302 Gly Gin Tyr Ile Met Thr Lys Arg Leu Tyr Asp Glu Lys Gin Gin His 420 425 430 435 ATT GTA TAT TGT TCA AAT GAT CTT CTA GGA GAT TTG TTT GGC GTG CCA 350 He Val Tyr Cys Ser Asn Asp Leu Leu Gly Asp Leu Phe Gly Val Pro 440 445 450 AGC TTC TCT GTG AAA GAG CAC AGG AAA ATA TAT ACC ATG ATC TAC AGG 398 Ser Phe Ser Val Lys Glu His Arg Lys Ile Tyr Thr Met Ile Tyr Arg 455 460 465 AAC TTG GTA GTA GTC AAT CAG CAG GAA TCA TCG GAC TCA GGT ACA TCT 446 Asn Leu Val Val Val Asn Gin Gin Glu Ser Ser Asp Ser Gly Thr Ser 470 475 480 GTG AGT GAG AAC AGG TGT CAC CTT GAA GGT GGG AGT GAT CAA AAG GAC 494 Val Ser Glu Asn Arg Cys His Leu Glu Gly Gly Ser Asp Gin Lys Asp 485 490 495 CTT GTA CAA GAG CTT CAG GAA GAG AAA CCT TCA TCT TCA CAT TTG GTT 542 Leu Val Gin Glu Leu Gin Glu Glu Lys Pro Ser Ser Ser His Leu Val 500 505 510 515 TCT AGA CCA TCT ACC TCA TCT AGA AGG AGA GCA ATT AGT GAG ACA GAA 590 Ser Arg Pro Ser Thr Ser Ser Arg Arg Arg Ala Ile Ser Glu Thr Glu 520 525 530 GAA AAT TCA GAT GAA TTA TCT GGT GAA CGA CAA AGA AAA CGC CAC AAA 638 Glu Asn Ser Asp Glu Leu Ser Gly Glu Arg Gin Arg Lys Arg His Lys 535 540 545 TCT GAT AGT TGAGAATTCA TCGTGACTGA CTGACGATCT GCCTCGCGCG 687 Ser Asp Ser 550 TTTCGGTGAT GACGGTGAAA ACCTCTGACA CATGCAGCTC CC 729 (2) INFORMATION FOR SEQ ID NO: 4: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 188 amino acids (B) TYPE: amino acid (D) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 4: Met Cys Asn Thr Asn Met Ser Val Pro Thr Asp Gly Ala Val Thr Thr 1 5 10 15 Ser Gin Ile Pro Ala Ser Glu Gin Glu Thr Leu Val Arg Pro Lys Pro 20 25 30 Leu Leu Leu Lys Leu Leu Lys Ser Val Gly Ala Gin Lys Asp Thr Tyr 35 40 45 Thr Met Lys Glu Val Leu Phe Tyr Leu Gly Gin Tyr Ile Met Thr Lys 50 55 60 Arg Leu Tyr Asp Glu Lys Gin Gin His Ile Val Tyr Cys Ser Asn Asp 65 70 75 80 Leu Leu Gly Asp Leu Phe Gly Val Pro Ser Phe Ser Val Lys Glu His 85 90 95 Arg Lys Ile Tyr Thr Met Ile Tyr Arg Asn Leu Val Val Val Asn Gin 100 105 110 Gin Glu Ser Ser Asp Ser Gly Thr Ser Val Ser Glu Asn Arg Cys His 115 120 125 Leu Glu Gly Gly Ser Asp Gin Lys Asp Leu Val Gin Glu Leu Gin Glu 130 135 140 Glu Lys Pro Ser Ser Ser His Leu Val Ser Arg Pro Ser Thr Ser Ser 145 150 155 160 Arg Arg Arg Ala Ile Ser Glu Thr Glu Glu Asn Ser Asp Glu Leu Ser 165 170 175 Gly Glu Arg Gin Arg Lys Arg His Lys Ser Asp Ser 180 185 (2) INFORMATION FOR SEQ ID NO: 5: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 11 amino acids (B) TYPE: amino acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: peptide (ix) FEATURE: (A) NAME/KEY: Modified-site (B) LOCATION:1 (D) OTHER INFORMATION: /product ^ "N-acetyl serine in position 1" /label= modifiedsite (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5: Ser Gin Glu Thr Phe Ser Asp Leu Trp Lys Leu 1 5 10 (2) INFORMATION FOR SEQ ID NO: 6: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 26 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: (A) NAME/KEY: protein_bind (B) LOCATION: 5..26 (D) OTHER INFORMATION: /bound_moiety= "p53 consensus binding site" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 6: AGCTTAGACA TGCCTAGACA TGCCTA 26 (2) INFORMATION FOR SEQ ID NO: 7: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 26 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: (A) NAME/KEY: protein_bind (B) LOCATIONS..26 (D) OTHER INFORMATION: /bound_moiety= "p53 consensus binding site" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 7: AGCTTAGGCA TGTCTAGGCA TGTCTA 26 (2) INFORMATION FOR SEQ ID NO: 8: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 34 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: (A) NAME/KEY: misc_feature (B) LOCATION:1..34 (D) OTHER INFORMATION: /product-- "PCR primer for cloning hdm2 N-terminal 188 aminoacid coding" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 8: GATCCGGGAT CCATGTGCAA TACCAACATG TCTG 34 (2) INFORMATION FOR SEQ ID NO: 9: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 38 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: (A) NAME/KEY: misc_feature (B) LOCATION: 1 . .38 (D) OTHER INFORMATION: /product= "PCR primer for cloning hdm2 188 N-terminal amino acid coding" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 9: GATCCGGAAT TCTCAACTAT (-ΑGATTTGTG GCGTTTTC 38 (2) INFORMATION FOR SEQ ID NO: 10: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 31 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (ix) FEATURE: (A) NAME/KEY: misc_feature (B) LOCATION:1..31 (D) OTHER INFORMATION:/product-- "PCR primer for p53D30 cloning" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 10: GATCCGCATA TGGAGGAGCC GCAGTCAGAT C 31 (2) INFORMATION FOR SEQ ID NO: 11: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 36 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: single (D) TOPOLOGY: linear (ii) MOLECULE TYPE: CDNA (ix) FEATURE: (A) NAME/KEY: misc_feature (B) LOCATION:1..36 (D) OTHER INFORMATION: /product= "PCR primer for p53D30 cloning" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 11: GATCCGGGAT CCTCAGCTCC CCCCTGGCTC CTTCCC 36

Claims: Claims: 1 . A method for testing the effect of a substance on the binding of a dm2 protein to p53, characterized in that complex formation is investigated in a mixture comprising (a) a p53 or functional equivalent thereof having specific DNA-binding, oligomerisation and dm2-binding properties, (b) a dm2 or functional equivalent thereof having the p53 binding domain, (c) a DNA sequence specifically binding to the p53 specific DNA binding domain, and (d) the substance to be tested. 2. The method according to claim 1 characterized in that complex formation is tested by gel shift assay. 3. The method according to claim 1 characterized in that human p53 is used. 4. The method according to claim 1 characterized in that the p53 used is p53D30. 5. The method according to claim 1 characterized in that hdm2 is used. 6. The method according to claim 1 characterized in that the functional equivalent is a truncated dm2 with p53 binding properties is used. 7. The method according to claim 1 characterized in that the functional equivalent is a protein which comprises the N-terminal 188 amino acids of hdm2 . 8. The method according to claim 1 characterized in that the functional equivalent is a fusion protein comprising glutathion-S-transferase of S. japonicum and the N-terminal 188 amino acids of hdm2. 9. The method of claim 1 in which both the binding of hdm2 to p53 and the binding of p53 to DNA is tested at the same time. 10. A test kit for testing the effect of a substance on the binding of a dm2 protein to p53, comprising (a) a p53 or functional equivalent thereof having DNA-binding, oligomerisation and hdm2-binding properties, (b) a hdm2 or functional equivalent thereof having the p53 binding domain, and (c) a DNA sequence specifically binding to the p53 binding domain.

Inventors: CHENE PATRICK, HOCHKEPPEL HEINZ-KURT, CHENE, PATRICK, HOCHKEPPEL, HEINZ-KURT
Applicants: CHENE PATRICK, CIBA GEIGY AG, HOCHKEPPEL HEINZ KURT, CHENE, PATRICK, CIBA-GEIGY AG, HOCHKEPPEL, HEINZ-KURT
Application year: 1996
Main classification: G01N33
IPC codes: G01N33