USE OF TOMATO E8-DERIVED PROMOTERS TO EXPRESS HETEROLOGOUS GENES, E.G. S-ADENOSYLMETHIONINE HYDROLASE, IN RIPENING FRUIT

Abstract: The use of AdoMetase to reduce ethylene biosynthesis in plants is facilitated by the exploitation of the tissue and stage specific properties of the E8 promoter from tomato. Expression of AdoMetase is shown to be limited to the ripening tomato fruit. The functional properties of several regions of the E8 promoter are described. The E8 promoter and variants described herein provide useful regulatable promoters for the expression of other genes as well as the AdoMetase gene.

Description: E OF TOMATO E8-DERIVED PROMOTERS TO EXPRESS HETEROLOGOUS GENES, E.G. 5-ADEN0SYLMETHI0NINE HYDROLASE, IN RIPENING FRUIT Field of the Invention The present invention describes the use of the E8 promoter, and variants described herein, as useful regulatable promoters for the expression of heterologous genes, including the AdoMetase gene. References Ausubel, F. M. , et al.. Current Protocols in Molecular Biology. John Wiley and Sons, Inc., Media PA. Adams, D.O., et al . , Plant Physiol. 70;117-123 (1977) . An, G., et al . , EMBO J. 1:277-284 (1985). An, et al., "Binary Vectors", in Plant Molecu- lar Biology Manual A3; 1-19 (1988). Bellini, C, et al., Bio/Technol 1(5): 503-508 (1989) . Dei man, J. , et al . , EMBO J. 2:3315 (1988). Deikman, J. , et al., Plant Physiol. 100:2013 (1992) . Fillatti, J.J., et al., Biotechnology .5:726 (1987) . Fritsch, E.F., et al., in Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. , Cold Spring Harbor, NY) , 2nd Ed. (1989) . Giovannoni, J.J., et al., Plant Cell .1:53-63 (1989) . Hamilton, A.J., et al . , Nature 346:284 (1990). Hood, E. , et al., J. Bacteriol. 168:1291-1301 (1986). Hughes, J.A. , et al., J. Bact. 169:3625 (1987a) . Hughes, J.A. , et al., Nuc. Acid. Res. 15:717 (1987b) . Horsten, K.H., et al., J. Gen. Virol. 43:57-73 (1979) . Imaseki, H., "The Biochemistry of Ethylene Biosynthesis", in The Plant Hormone Ethylene (Mattoo, A.K., et al., eds.) CRC Press, pp 1-20 (1991) . Klee, H.J., et al . , The Plant Cell 2:1187-1193 (1991) . Klein, T.M. , et al . , PNAS (USA) 85(22):8502- 8505 (1988) . Kozak, M. , J. Mol. Bio. 196:947 (1987). Kushad, M.M., et al., Plant Physiol. 73:257-261 (1983) . Lee, J.J., et al., Methods in Enzymology 152:633-648 (1987). Lincoln, J.E., et al . , Proc. Natl . Acad. Sci . USA 84.:2793 (1987) . Lutcke, H.A., et al . , EMBO J. 6:43-48 (1987). Maniatis, T. , et al. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory (1982) . Mertens, H. , et al., J. Gen. Virol. 62:331-341 (1982) . Miki, B.L.A., et al., Plant DNA Infectious Agents (Hohn, T. , et al., eds.) Springer-Verlag, Wien, Austria, pp.249-265 (1987). Mullis, K.B., U. S. Patent No. 4,683,202, issued 28 July 1987. Mullis, K.B., et al., U. S. Patent No. 4,683,195, issued 28 July 1987. Nagel, R. , et al., FEMS Microbiol. Lett. 67:325 (1990) . Oeller, P.W. , et al., Science 254:437-439 (1991) . Sambrook, J. , et al., In Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Vol. 2 (1989) . Studier , F . W . , et al . J . Virol 19 : 136 ( 1976 ) . Background of the Invention Ethylene is a plant hormone which is a powerful regulator of plant metabolism, acting, and interact¬ ing with other plant hormones in trace amounts. Ethylene is a gas under normal physiological condi¬ tions. Even at low concentrations, ethylene has profound hormonal effects on plants. The effects of ethylene, whether produced by the plant itself or applied exogenously, are numer¬ ous, dramatic, and of considerable commercial importance. Among the diverse physiological effects are the following: leaf abscission; fading in flowers; flower wilting; leaf yellowing; leaf epinasty; and stimulation of ripening in fruits and vegetables. Ethylene promotes senescence in plants, both in selected groups of cells and in whole organs, such as, fruits, leaves, or flowers. Senescence is the natural, genetically controlled degenerative process which usually leads to death in plants. Normally, ethylene production from plant tissue is low. Large quantities of ethylene, however, are produced during ripening and senescence processes. A large amount of ethylene is also produced follow¬ ing trauma caused by chemicals, temperature ex¬ tremes, water stress, ultraviolet light, insect damage, disease, or mechanical wounding. Ethylene produced by plants under such trauma conditions is referred to as "wound ethylene" or "stress ethyl¬ ene". In fruits and vegetables, the stimulation of ethylene production by cuts or bruises may be very large and bear considerably on storage effective- ness. Ethylene-induced leaf browning is a common basis for loss in many plants, including lettuce and tobacco. In some tissues, exposure to only a small amount of ethylene may cause an avalanche of ethyl¬ ene production in adjacent plants or plant tissues such as fresh produce. This autocatalytic effect can be very pronounced and lead to loss of fruit quality during transportation and storage. Current technologies that specifically address post-harvest storage life have been in existence for decades and are hampered by such problems as high cost, side effects, and an inability to completely shut off ethylene production. Included in this group are controlled atmosphere (CA) storage, chemical treatment, packaging, and irradiation. CA facilities slow ethylene biosynthesis through: (i) low temperature, (ii) reducing the oxygen level below 3%, and (iii) elevating the carbon dioxide level in the storage area to the 3%- 5% range. Expensive scrubbers are sometimes added which reduce ethylene already respired to the atmosphere. Drawbacks are that CA facilities are expensive to construct, have a high utility cost, and are unable to completely eliminate ethylene production and side effects. Also, CA storage techniques can only control external ethylene and not that which resides inside the plant tissue. CA storage can also lead to undesirable side effects: injury can result from high C0 2 levels, low 0 2 levels, or low temperature. Another treatment is to limit the ethylene biosynthesis in the plant tissue through chemical treatment. Aminoethoxyinylglycine (AVG) , an analog of the antibiotic rhizobitoxine, is one such inhibi¬ tor. However, AVG cannot be used as a chemical additive in foods due to its high toxicity. Silver thiosulfate (STS) is also effective in slowing fruit ripening and flower fading, but is also toxic and cannot be used on foods. Further, STS only works with certain flowers and often causes black spot¬ ting. Recently, molecular genetic approaches leading to transgenic plants with impaired biosynthesis of ethylene have been reported. Hamilton, et al . , identified a cDNA clone for tomato EFE (pT0M13) by inhibiting ethylene synthesis with an antisense gene expressed in transgenic plants. Oeller, et al . , showed that expression of antisense RNA to the rate-limiting enzyme in the biosynthetic pathway of ethylene, 1-aminocyclopropane-l-carboxylate syn- thase, inhibits fruit ripening in tomato plants. Klee, et al . , cloned the gene encoding ACC deami- nase, from soil bacteria, and introduced it into tomato plants. Reduction in ethylene synthesis in transgenic plants did not cause any apparent vegeta¬ tive phenotypic abnormalities. However, fruits from these plants exhibited significant delays in ripen¬ ing, and the mature fruits remained firm for at least 6 weeks longer than the non-transgenic control fruit. Summary of the Invention The present invention describes the development of transgenic plants, particularly, fruit-bearing transgenic plants. These plants contain a DNA sequence which encodes a desired gene product, such as a S-adenosylmethionine hydrolase enzyme (Ado¬ Metase) . Adometase is capable of hydrolyzing S- adenosylmethionine to homoserine and 5 '-methylthio- adenosine. In the transgenic plants of the present invention the expression of the desired gene product is under the transcriptional control of an E8- derived promoter. The DNA sequence encoding the desired gene product is not the DNA sequence normal¬ ly adjacent (homologous sequences) the E8 promoter, rather, the sequences are heterologous to the E8 promoter. The E8 gene promoter comprises the regulatory region located 5' to the coding sequence of the tomato E8 gene. Promoters homologous to the E8 promoter can be identified by standard hybridization or DNA amplification methods. Figure 13 presents a representative nucleotide sequence of a portion of the E8 promoter. Two E8 promoter regions have been defined by the present invention, the SE8 promoter, which includes the entire region represented in Figure 13, and the lower E8 promoter, which includes the region represented as bases 1189 to 2214. Either of these promoters can be used in generating the transgenic plants of the present invention. AdoMetase enzyme coding sequences can be obtained from a number of bacteriophage including the following: Escherichia coli bacteriophage T3, coliphage BA14, Klebsiella phage Kll, and Seratti phage IV. An exemplary AdoMetase enzyme coding sequence was derived from Escherichia coli bacterio¬ phage T3 and a representative coding sequence is presented in Figure 11. One embodiment of the present invention is a transgenic tomato plant containing a heterologous DNA sequence whose expression is under the control of an E8 promoter. The invention also includes transgenic tomato-fruit cells. Included in the present invention, transgenic tomato plant cells and tomato fruit cells containing a DNA sequence which encodes and expresses AdoMetase, where expression of AdoMetase is under the transcriptional control of an E8 promoter. The present invention also includes a method for regulating expression of a gene product in cells of a plant. In this method a vector is provided containing a first DNA sequence containing a gene useful for genetic selection in plant cells, where this sequence is flanked by regulatory elements effective to allow expression of the sequence in plant host cells. The vector also includes a second DNA sequence that encodes a desired gene product, where expression of said second DNA sequence is under the transcriptional control of an E8 promoter, and where said DNA sequence is not normally contigu¬ ous with the E8 promoter. In one embodiment, the second DNA sequence encodes a S-adenosylmethionine hydrolase enzyme which hydrolyses S-adenosyl¬ methionine to ho oserine and δ'-methylthioadenosine. The vector described above is used to transform plant host cells. These cells are cultivated to generate transgenic plants. When the vector is used to generate transgenic plants that bear fruit, the fruit cells can express the desired gene product, e .g . , the AdoMetase enzyme. AdoMetase enzyme coding sequences can be obtained from the same sources as described above. The vector can be introduced into host plant cells by a number of transformation methods includ¬ ing, Agrobacterium-mediated transformation, electro- poration, microinjection, and microprojectile bombardment. A typical gene useful for genetic selection in plant cells is a gene which confers kanamycin resistance. The invention includes the above described vectors useful in plant transformation methods. Expression of a selected gene, for example, the AdoMetase gene, can be regulated by a tissue or stage specific promoter, including an E8 promoter, or derivatives thereof. The invention also includes the use of variants of the E8 promoter, described herein, to confer tissue and/or stage specific expression to any gene placed under their control. Brief Description of the Figures Figure 1 schematically illustrates the metabol¬ ic reactions for the synthesis of ethylene from methionine under both normal and stress conditions. Figure 2 schematically illustrates the steps described for the genetic engineering of the Ado- Metase-encoding gene. Figure 3 illustrates the elements of the tomato E8 promoter and the primers used to amplify and , isolate the promoter sequences. Figure 4 outlines the steps involved in the construction of pGA-SESKN from pGA-ESKN and shows the elements of the E8 gene adjacent the AdoMetase (SAMase) coding sequences which are followed by nosT transcription termination sequences. Figure 5A schematically represents the struc¬ ture of the pGA-ESKN vector. Figure 5B schematical¬ ly represents the structure of the pGA-SESKN vector. Figure 6 shows the photograph of an autoradio- gram which demonstrates the AdoMetase mRNA levels in fruit derived from two different transgenic plants. Figure 7 shows a quantitation of the results presented in Figure 6. These results illustrate the effect of variations of the E8 promoter on AdoMetase mRNA levels in ripening tomatoes. Figure 8 is a graph representing the relative levels of AdoMetase activity in ripening tomatoes at different stages. Figure 9 presents the data for ethylene produc¬ tion in the fruit of 4 different transgenic plants (Figure 9A, ES 19-2; Figure 9B, LS 4-2; Figure 9C, ES 35-1; and Figure 9D, ES22 A-l) over a ten day period after entry of the fruit into breaker stage. Figure 10 illustrates the post-harvest shelf life of tomatoes obtained from SESKN transgenic plants. Figure 11 presents the sequence of the SAM-K modification of the AdoMetase gene derived from bacteriophage T3. Figure 12A outlines the steps involved in the construction of the vector pESKN. Figure 12B outlines the steps involved in the modification of pESKN to the vector pGA-ESKN. Figure 13 presents the sequence of the upstream minus 2216 base pair region of the tomato E8 gene. Detailed Description of the Invention The present application describes use of variants of the E8 promoter, described herein, to confer tissue and/or stage specific expression to any gene placed under their control. I. Use of S-Adenosylmethionine Hydrolase in Plants. The amino acid methionine has been shown to be a precursor of ethylene in plant tissues (reviewed by Imaseki) . Methionine, however, is not the immediate precursor but first must be converted to the sulfonium compound S-adenosylmethionine (SAM) and, subsequently, aminocyclopropane-1-carboxylic acid (ACC) prior to conversion to ethylene. The metabolic reactions for the synthesis of ethylene from methionine under both normal and stress condi¬ tions are presented in Figure 1 and summarized as follows: Methionine → SAM → ACC → Ethylene ACC synthase catalyzes the degradation of SAM to ACC and 5'-methylthioadenosine (MTA) . This enzymatic reaction appears to be the rate limiting step in ethylene formation. For example, the natural plant hormone indoleacetic acid (IAA or auxin) stimulates ethylene production by inducing the synthesis of ACC synthase. Conversely, the synthesis of SAM from methionine and the production of ethylene from ACC do not require auxin induction. In addition, wounding and fruit ripening induces the formation of ACC synthase and, there¬ fore, the conversion of SAM to ACC. The other product of the ACC synthase reaction, MTA, must be recycled back into methionine so as to provide an adequate supply of methionine for continual ethylene production. This recycling pathway from MTA to methionine has been shown to exist in plant tissue (Adams, et al . ; Kushad, et al . ) . The degradation of MTA has added significance in light of the finding that MTA is a potent inhibitor of ACC synthase. The importance of the degradation and recycling of MTA in normal plant tissues is, therefore, twofold: 1) to prevent the direct inhibition of ethylene synthe¬ sis by MTA, and 2) to provide adequate methionine for continual ethylene synthesis. A summary of this metabolic pathway is shown in Figure la. The first step in the degradation of MTA in plant tissue is the hydrolysis of this nucleoside to 5-methylthioribose (MTR) by a specific MTA nucleo- sidase. MTR not only provides its methylthio moiety for the formation of methionine, but also contrib¬ utes four carbons from its ribose towards the synthesis of this amino acid. Therefore, the methylthio group is conserved by recycling. It should be noted that this pathway merely maintains a methionine supply for ethylene biosynthesis, but does not result in a net increase in methionine synthesis. The approach to reduce ethylene biosynthesis in plants reported here and in co-owned PCT Interna- tional Application, PCT/US90/07175, filed 12 Decem¬ ber 1990, utilizes a gene that encodes the enzyme S- adenosylmethionine hydrolase. This enzyme, encoded by the E. coli bacteriophage T3, hydrolyses AdoMet to homoserine and MTA. The enzyme is known as its recommended name, AdoMet hydrolase (AdoMetase) , or by its other name, S-adenosylmethionine cleaving enzyme (SAMase) (Studier, et al . ) . Both products of the reaction (i.e., homoserine and MTA) are recycled to methionine; MTA as previously shown (Figure l) and homoserine via a metabolism pathway known to exist in plant tissues. The AdoMetase gene has been identified, isolat¬ ed, cloned, and sequenced (Hughes, et al . , 1987a; Hughes, et al., 1987b). The gene contains two in- frame reading sequences that specify polypeptides of 17105 and 13978 daltons. Both polypeptides termi¬ nate at the same ochre codon. This results in the 14 kd polypeptide being identical to 82% of the 17kd polypeptide starting at the carboxyl end of the longer polypeptide. Both polypeptides are present in partially purified cells and from E. coli ex¬ pressing the cloned gene (Hughes, et al . , 1987b; Studier, et al . , 1976). Other bacteriophages that encode the AdoMetase or SAMase genes are coliphage BA14, Klebsiella phage Kll, and Serratia phage IV (Mertens, et al. ; Horsten, et al . ) . The effect AdoMetase expression in plant cells has on the plant methionine recycling pathway is shown schematically in Figure lb. Experiments performed in support of the present invention, using transgenic plants expressing an AdoMetase gene and monitoring ethylene production, have demonstrated that the effect of AdoMetase on the pathway is to "short circuit" the branch that produces ethylene: ethylene production is reduced in such transgenic plants, including production in leaf tissue and fruit. II. AdoMetase Encoding Genes. Different bacteriophages may be expected to contain AdoMetase genes with variations in their DNA sequences. The isolation of AdoMetase coding sequences from bacteriophage coding sequences can be accomplished as previously described for AdoMetase from bacteriophage T3. Alternatively, degenerative hybridization probes for AdoMetase coding sequences can be generated and used to screen plasmids carry¬ ing fragments of a selected bacteriophage , s genome for the presence of homologous sequences. AdoMetase enzymatic activity can be evaluated by standard biochemical tests (see for example. Example 5) . Furthermore, the amino acid sequence of Ado¬ Metase may be modified by genetic techniques to produce enzymes with altered biological activities (see below) . An increase in the biological activity could permit the use of lower amounts of the enzyme to control ethylene biosynthesis in plants. A series of recombinant DNA manipulations were performed in the AdoMetase gene prior to placement in an Agrobacterium expression vector. Initially, a Maelll to BamHI fragment from M13HB1 (Hughes, et al . , 1987a) was subcloned into the pUCl9 plasmid vector to produce pUC19-SAM (Example 1) . To in¬ crease the translational efficiency of the AdoMetase gene in plants, site directed mutagenesis of the nucleic acid sequences surrounding the ATG start codon was performed. A synthetic double stranded 39 base pair oligonucleotide was synthesized and substituted for the BamHI to XmnI fragment at the 5' end of the gene (Figure 2) . The net effect of this substitution was to change the CACCAAATGA in the native T3 sequence to GCCACCATGG which an optimal eukaryotic translational initiation sequence (Kozak, et al . ; Lutcke, et al . ) . The change also introduces an NcoJ site (CCATGG) at the SAMase start codon which facilitates fusions to different promoters. The only alteration to the AdoMetase coding sequence is the amino acid at amino acid position two which is changed from isoleucine to valine: this is a highly conservative amino acid change. The altered form of AdoMetase was named SAM-K (Figure 11) . A recombinant vaccinia vector with SAM-K (w:SAM-K) was constructed. Expression of this vector in African green monkey cells or T3-infected bacterial cells was compared with the gene to the native T3 gene when expressed in the same cells. The specific activity of AdoMetase was higher in the w:SAM-K infected cells than in the T3 infected bacterial cells demonstrating that SAM-K encodes a fully functional version of AdoMetase. Experiments performed in support of the present invention have demonstrated constitutive expression of AdoMetase in transgenic tomato and tobacco plants. In these plants there was a significant reduction in the ability of these plants to synthe- size ethylene as measured in a leaf disk assay. III. Promoter Regulated SAMase Gene Expres¬ sion. Regulatable promoters have been employed in the method of the present invention. One exemplary regulatable promoter is the tomato E8 gene promoter. Expression of the E8 gene has been shown to be induced (i) at the onset of ripening, and (ii) by treatment of tomatoes with ethylene (Deikman, et al . , 1988; Lincoln, et al . ; Giovannoni, et al . ) . The sequence of the E8 promoter has been published (Deikman, et al . , 1988; Deikman, et al . , 1992) and the DNA sequence of the minus 2216 base pair region is presented in Figure 13. Using the sequence shown in Figure 13 primers were prepared for use in the polymerase chain reaction (PCR) to amplify the 1124 base pair promot¬ er from tomato genomic DNA (Example 1) . The primers were designed with unique restriction sites at each end and were used to place the promoter in the proper orientation 5' of the SAM-K gene in pUC19 (Figure 3) . The 3' end of the promoter fragment had an Ncol site (CCATGG) placed such that the ATG start codon of the E8 gene product was used as the ATG in the Ncol site. This allowed precise placement of the entire E8 promoter directly in front of the SAM- K amino acid coding sequences with no intervening sequences (Example 1, Figure 12A) . Two AdoMetase expressing vectors were con¬ structed (Example 1) , the pGA-ESKN vector (Figures 12A, 12B and Figure 5A) and the pGA-SESKN vector (Figure 4 and Figure 5B) . The pGA-ESKN vector contains a portion of the E8 promoter (Figure 4, lower E8 promoter) adjacent the AdoMetase coding sequences. A lambda EMBL-3 clone containing genomic tomato sequences that hybridize to the -1124 E8 region was isolated and used as the source for a region upstream of the -1124 E8 (lower E8) promoter. Restriction mapping analysis and subcloning allowed identification of an approximately 1200 bp Hindlll to XJaJ fragment as the region immediately upstream of the original -1124 bp E8 promoter (Figure 4) . This region was added to the pGA-ESKN construct to yield pGA-SESKN, which contained the approximately - 2254 bp E8 promoter fused to the AdoMetase gene (Figure 4, SE8) . Both of these vectors were transferred to tomato plants (Example 2) to generate transgenic plants expressing AdoMetase. A number of methods, in addition to Agrobacterium-based methods, may be employed to elicit transformation of the plant host, such as electroporation, microinjection, and micro- projectile bombardment. These methods are well known in the art (Klein, et al . ; Miki, et al . ; Bellini, et al . ) . Further, these methods provide the means to introduce selected DNA into plant genomes: such DNA may include a DNA cassette which consisting of the E8 gene promoter functionally adjacent AdoMetase coding sequences. Several transgenic plants were assayed for their ability to synthesize AdoMetase mRNA using a sensitive RNAase protection assay (RPA) (Example 3) . Figures 6 and 7 show the results of an RPA using the fruit from two transgenic plants (ESKN and SESKN) at different stages of fruit ripening. Other tissues from these plants including immature and mature leaves, flowers and stems were negative for the presence of AdoMetase RNA. Although the expression of AdoMetase in ESKN transgenic plants was regulated to the post mature green fruit, it was repeatedly observed (as shown in Figures 6 and 7) that the expression of AdoMetase turned off in the fully ripe fruit. On the other hand, the SESKN transgenic fruit maintained AdoMetase mRNA expression in ripe fruit. To determine whether the presence of AdoMetase enzyme activity correlated with the level of Ado¬ Metase mRNA, an AdoMetase assay was performed using extracts from four fruit obtained at different stages from an ESKN transgenic plant (Example 5) . Figure 8 shows the level of AdoMetase activity in mature green, breaker, orange, and ripe fruit from a single pGA-ESKN transgenic plant. These data demonstrate that AdoMetase activity follows roughly the same expression pattern in ripening fruit as the AdoMetase mRNA levels. The data presented above suggest that inclusion of the upstream region of the native E8 promoter in the AdoMetase expression construct enhances long- lived AdoMetase gene expression in ripening trans- genie tomatoes. Figure 6 shows the RPA results from pGA-SESKN line 22A-1 and from pGA-ESKN line 18. ESKN line 18 had one of the highest levels of AdoMetase expression of all the ESKN transgenic lines. Quantitative measurement of AdoMetase mRNA is shown in Figure 7. The results show that the - 2254 bp E8 promoter expression is maintained through the fully ripe stage of fruit development. This expression pattern is in sharp contrast to the -1124 bp E8 promoter (ESKN) mRNA levels also shown in Figure 6. Ethylene evolution measurements from fruit picked at breaker and analyzed daily are shown in Figure 9. The rate at which fruit from SESKN lines 22A and 35-1 produced lycopene was reduced as evidenced by the time required for orange fruit development. Furthermore, the total amount of ethylene produced from these tomatoes was reduced by approximately 80%. The expression of AdoMetase and a reduction in ethylene biosynthesis was strictly correlated in the 25 SESKN transgenic plants ana¬ lyzed. The SESKN tomatoes that synthesized less ethylene were assessed for their shelf life proper¬ ties when stored at room temperature (22°C) (Example 5) . Three fruit each from SESKN lines 22A-1 and 35- 1 were compared with untransformed normal tomatoes. Senescence was determined by visually observing contraction and wrinkles on the tomato skin. Firmness was not measured but was noted to be much greater in the transgenic lines. The results of these senescence assessments are shown in Figure 10. Even at 55 days post-breaker, the 22A-1 tomatoes remained firm and appeared to be suffering more from dehydration than from the softening-induced senes¬ cence of the normal tomatoes. These results demonstrate the ability to provide tissue specific regulation to the AdoMetase enzyme in transgenic plants. In addition, the results obtained with the two different E8 promoters (lower E8 and SE8) suggest the use of these promot¬ ers for similar tissue specific expression of any desired gene product. A tissue or stage specific promoter is a region of DNA that regulates tran¬ scription of the immediately adjacent (downstream) gene to a specific plant tissue or developmental stage of the plant or plant tissue. Other gene products which may be useful to express using these promoters include genes encoding (i) flavor or color modification proteins, and (ii) enzymes, such as is encoded by the taumatin gene, that modify lycopene synthesis. Further, it is useful to restrict expression of some genes to specific tissues, such as the fruit — for example, any gene that would be deleterious to the plant if it were expressed constitutively. Such genes would include genes which encoded degradative enzymes that deplete necessary metabolites. As can be seen from the results described above, derivatives of the E8 promoter region can be used as on/off switches for the tissue and stage specific expression of genes whose expression is under their control. The present method is applicable to all higher plants. Regulatable promoters other than the E8 promoter can also be used in the practice of the present invention include, but are not limited to the following: the E4 gene promoter from tomatoes; and, the promoter for ethylene forming enzyme (EFE) from tomatoes. Further, the two regions of the E8 promoter (lower E8 and upper E8, Figure 4) can be used as hybridization probes against libraries of DNA representative of the genomes of other plant species. Homologous sequences to the E8 promoter are then tested for tissue specific expression in the plant species from which they were isolated. Such promoters, as well as the E8 promoter itself, can be tested for regulatable expression in heterol¬ ogous plant systems using the methods described herein. A reporter gene, such as GUS ( / ff-glucuroni- dase) , can be used to test tissue specific regulat¬ able expression from these promoters. Expression of GUS protein can be easily measured by fluorometric, spectrophotometric or histochemical assays (Jeffer¬ son, 1987) . Variants of the E8 promoter may be isolated from different tomato cultivars by standard recombi- nant manipulations such as primer specific amplifi¬ cation (Mullis; Mullis, et al . ) or oligonucleotide hybridization (Ausubel, et al . ; Sambrook, et al . ) . Another gene whose promoter may be used for AdoMetase expression is the polygalacturonase gene promoter from tomato. The following examples illustrate, but in no way are intended to limit the present invention. Materials and Methods Tomato seed (Lycopersicon esculentum Mill. var. cerasiforme (Dunal) Alef. cv. Large Red Cherry) were obtained from Peto Seed, Inc. (Saticoy, CA) and were grown under standard greenhouse conditions. Har¬ vested fruit were stored at room temperature (22°C) . EXAMPLE 1 Cloning of the AdoMetase Gene A. Isolation of the AdoMetase Gene. The AdoMetase gene was identified on an _AluI- Haelll restriction fragment from purified T3 DNA (Hughes, et al . , 1987a). Bacteriophage T3 is available under ATCC No. 11303-B3 (American Type Culture Collection, 12301 Parklawn Dr. , Rockville MD 20852) . The DNA fragment was first cloned into the bacteriophage M13 MP8 vector (Pharmacia LKB Biotechnology, Inc. , Piscataway, NJ) . A Maelll to BamHI fragment was subcloned into the pUC19 plasmid vector (Pharmacia) to produce pUC19-AdoMetase (pUC19-SAMase; Figure 2). The generation of the pUC19-AdoMetase vector was described in co-owned PCT International Application, PCT/US90/07175, filed 12 December 1990, herein incorporated by reference. This vector was transformed into E. coli and used as a source of DNA for further construction experiments and for DNA sequence determination. B. Modification of the Amino-Terminal Se- quence of the Cloned AdoMetase Gene. The cloned AdoMetase gene was further engi¬ neered to contain a consensus eukaryotic translation initiation site (Kozak; Lutcke, et al . ) by altering the nucleotide sequence surrounding the SAMase ATG start-codon using a synthetic double-stranded oligonucleotide. The plasmid pUCl9-AdoMetase was digested with Xmal and BamHI and the 1.9 kb and 1.3 kb fragments were purified by electro-elution after agarose gel electrophoresis. A double stranded synthetic oligonucleotide linker having the sequence indicated in Figure 3 was ligated to the 1.9 kb fragment and this ligated DNA subjected to Xmal digestion to remove excess linkers. The 1inkered 1.9 kg fragment was then re- purified by electrophoresis on low melting tempera¬ ture agarose and ligated to the 1.3 kb fragment to form the plasmid pUC19-SAM-K. The altered gene region was subjected to DNA sequence analysis. The gene sequence is given in Figure 11. This gene was designated SAM-K and used to construct the following plant expression vectors. This plasmid DNA can also be used to directly transform the plant host via electroporation, microinjection, or microprojectile bombardment. C. Vector Constructions using the Tomato E8 Promoter. Two different forms of the E8 promoter were used to construct SAM-K-containing vectors. The first (-1124 bp) was isolated from tomato (Lyco- perεicon esculentum var. cerasiform) DNA using polymerase chain reaction (PCR) (Mullis; Mullis, et al . ; Perkin-Elmer Cetus, Norwalk CT) . The primers used in the PCR reaction were based on the sequence described by Deikman, et al . (1988). The sequences of the oligonucleotide primers are given in Figure 3. The oligonucleotides were designed to incorpo¬ rate restriction endonuclease sites (Xbal and Ncol) at the 5' and 3' ends, respectively, of the ampli¬ fied E8-promoter fragment. These restriction endonuclease cleavage sites facilitated subcloning into the pUC19-SAM-K vector (see Figure 2) : an Ncol site is present near the ATG start codon region in the synthetic oligonucleotide. Figure 12A outlines the generation of the vector pESKN starting from vector pNCN (Pharmacia, Inc., Piscataway, NJ) and pUC-SAM-K (described above) . The sequence of the E8 promoter (the lower E8 promoter) is similar to the sequence presented as bases 1189 to 2214 in Figure 13. Figure 12B outlines one approach to the genera- tion of Agrobacterium vectors for use in the present invention. However, the E8/AdoMetase cassette, present in, for example, pESKN, can be incorporated in a number of vectors useful for plant transforma¬ tion. Agrobacterium binary vectors were developed from pGA482 (An, et al . , 1985), a pBIN19 derivative (Clontech Laboratories) containing the neomycin phosphotransferase II gene fused to the nopaline synthesis gene promoter (An, et al . , 1988). The resulting vector, designated pGA-ESKN is shown in Figure 5A. The second E8 promoter (-2254 bp) was isolated from a lambda EMBL-3 clone that contained the entire E8 gene. The E8 gene clone was selected from a tomato (Lycopersicon esculentum var. VFN8) genomic library obtained from Clontech Laboratories (Palo Alto, CA) using the PCR-derived E8 promoter fragment (described above) as a hybridization probe in plaque-lift filter hybridizations. The lambda clone carrying the E8 gene was identified by a positive hybridization signal. The E8-bearing phage was plaque purified and the lambda phage DNA isolated. The lambda E8 genomic clone was used as a source of the Hindlll to Xbal fragment that is the approximately -2254 to -1124 bp upstream region of the E8 promoter. This fragment was inserted 5' of the approximately -1124 bp E8 promoter in pGA-ESKN at the Hindlll and Xbal sites (Figure 4) . The resulting plasmid was named pGA-SESKN. Figure 13 shows the nucleotide sequence of the -2216 bp region from one cultivar (Deikman, et al . , 1988, 1992). The Hindlll to Xbal fragment (used for construction of the approximately -2254 promoter) contains additional sequences 5' to the end of this -2216 bp sequence. Figure 4 shows the relationship of the two portions of the E8 promoter that are present in pGA- SESKN. Standard recombinant DNA techniques were employed in all constructions (Adams, et al . ; Ausubel, et al . ) . Another lambda vector, pGEM7Zf(+)SAM-K, was constructed by cloning the BamHI to Kpnl AdoMetase fragment from pUC19:SAM-K into the same sites of pGEM7Xf(+) (Promega, Inc., Madison, WI) . Other plant cloning vectors, such as pBI121 (Clontech Laboratories, Inc., Palo Alto, CA) , can also be used to practice the present invention. The plant promoter upstream of the AdoMetase gene sequence can be varied to obtain tissue specific expression, temperature dependent expression, or light dependent expression in the transgenic plants. Another useful plant promoter, in addition to the E8 promoter described above, is the constitutive Cauliflower Mosaic Virus (CaMV) promoter (Pharmacia) . EXAMPLE 2 Plant Transformation The pGA-ESKN and pGA-SESKN AdoMetase plasmids were separately introduced into Agrobacterium using a direct transformation method. Agrobacterium tumefaciens strain EHA101 (Hood, et al . ) , a disarmed derivative of AgroJacterium tumefaciens strain C58, was used to introduce coding sequences into plants. This strain contains a T- DNA-less Ti plasmid. The pGA-ESKN and pGA-SESKN AdoMetase plasmids were transferred into EHA101 using electroporation essentially as described by Nagel, et al . Briefly, an Agrobacterium tumefaciens culture was grown to mid-log phase (0D 600 0.5 to 1.0) in YEP media (10 g yeast extract, 10 g peptone, and 5 g NaCl per liter) . After chilling on ice, 50 mis of these cells were pelleted, resuspended in 1 ml of ice cold 20 mM CaCl 2 and split into 1 ml aliquots. Typically, one μg of plasmid DNA was added to an aliquots and incubated on ice for 30 minutes. The aliquot was then frozen in liquid nitrogen and thawed at 37°C for 5 minutes. One ml of YEP media was added and incubated at 28°C for 2 hours. The cells were pelleted, resuspended in 50 μl of YEP, and plated on YEP agar plates containing 20 g/ml kanamycin. Kanamycin-resistant transformed colonies appear within 2 days. Tomato cotyledon tissue explants were excised from both the tip and base of the cotyledon. Cotyledon explants were pre-conditioned for 2 days on tobacco feeder plates (Fillatti, et al . ) . The pre-conditioned explants were inoculated with EHAlOl containing the pGA-ESKN or pGA-SESKN AdoMetase plasmid of interest and finally placed in a 10 ml overnight culture of EHA101/[pGA-ESKN or pGA-SESKN] for 5 minutes. The explants were then co-cultivated with the EHAlOl strains for 2 days on tobacco feeder plates as described by Fillatti, et al . The explants were grown in tissue culture media (Fillatti, et al . ) containing 2Z media, MS salts, Nitsch and Nitsch vitamins, 3% sucrose, 2 mg/1 seatin, 500 mg/1 carbenicillin, 100 mg/1 kanamycin and 0.7% agar. The explants were grown in tissue culture for 8 to 10 weeks. The carbenicillin treatments were kept in place for 2 to 3 months in all media. The explants and plants were kept on carbenicillin until they were potted in soil as a counter-selection to rid the plants of viable Agrobacterium tumefaciens cells. EXAMPLE 3 RNAase Protection Assays for the Detection of SAMase mRNA Tomato fruits at various stages of development from transgenic plants and wild-type plants were used as mRNA sources. mRNA was extracted from tomato cells and purified using the "QUICK PREP RNA" kit from Pharmacia, Inc. RNAse Protection Assays (RPA) were performed following the manufacturer's instructions using an "RPAII" kit from A bion, Inc. (Hialeah, FL) . This method has been previously described by Lee, et al . pGEM7Zf(+)SAM-K was used to generate 32 p-UTP- labeled RNA probe using bacteriophage T7 RNA poly¬ merase as contained in the "RIBOPROBE IT T7 RNA POLYMERASE SYSTEM" from Promega, Inc. The radio- labeled probe was purified on a preparative poly- acrylamide gel and used for up to one week. One microgram of isolated mRNA was hybridized to approximately 10,000 CPM of the RNA probe and further processed as per the instructions in the "RPA II" kit. Briefly, one microgram of the puri- fied mRNA was mixed with 10,000 CPM of the RNA probe in a total volume of 15 μl. 20 μl of a hybridiza¬ tion buffer that allows hybridization of complemen¬ tary sequences (Ausubel, et al . ; Maniatis, et al . ; Sambrook, et al . ) is then added. The hybridization solution is provided in the "RPAII" kit from Ambion. The solution was heated to 90°C for 3-4 minutes to denature all the RNA and incubated at 45°C overnight to allow hybridization of complementary sequences. The solution was cooled to 37°C and RNase (provided in the Ambion kit) was added which degrades all unhybridized probe. Protected probe was resolved on a denaturing polyacrylamide gel, dried, and exposed to film for up to 16 hours. Quantitative analysis of the RPA signals was accomplished by excising each band from the gel, dissolving the band in a liquid fluor, and determining the radioactivity present in the sample using liquid scintillation counting. A standard curve was generated using various amounts of unla- beled RNA synthesized from a AdoMetase fragment cloned into pGEM5Z(+) in the sense orientation. The linear range of the assay was dependent on the amount of input 32 P-labeled RNA probe in the RNAase protection assay but typically ranged from 10 pg to 1 ng of mRNA. EXAMPLE 4 Ethylene Measurements The assay for tomato ethylene evolution is performed over a 0.5 to 1.0 hour period by sealing glass jars containing individual fruit and sampling 2 ml aliquots for gas chromatographic analysis. A Hewlett Packard 5890 (Palo Alto, CA) gas chromato- graph with a flame ionization detector and a 6ft Porapak N column was used for ethylene measurements (Adams, et al . ) . This system combined with an HP Vectra computer and the current version of "CHEM- STATION" (Hewlett Packard) allows measurement of ethylene concentrations as low as 0.2 nl of ethylene in a 2 ml sample (0.1 ppm). After measurement of the ethylene in the headspace, the values are converted to nl of ethylene per gram of tissue per hour. EXAMPLE 5 Characterization of Transgenic Tomatoes A. Promoter Effect on SAMase mRNA Levels in Ripening Transgenic Fruit. Transgenic fruit were selected from two trans¬ genic plants, ESKN #18 and SESKN #22A, at three stages of ripening, breaker (Br) , Orange (Or) and Ripe (Ri) . Transgenic plant ESKN #18 contained the lower E8 promoter (Figure 4) adjacent the Sam-K AdoMetase gene. Transgenic plant SESKN #22A con¬ tained the entire SE8 promoter (Figure 4) adjacent the Sam-K AdoMetase gene. The AdoMetase mRNA level in ripening transgenic fruit was determined as described in Example 3. The products of the RNA protection assay were resolved on polyacrylamide gels and exposed to X-ray film. A representative autoradiogram of the RNA protection assay is presented in Figure 6. As can be seen in the figure, AdoMetase mRNA was present in both transgenic plants at the breaker stage of fruit ripening. However, the levels of AdoMetase mRNA drop in the ESKN transgenic plant, relative to the SESKN transgenic plant, at the orange and ripe stages of fruit ripening. The level of AdoMetase mRNA was quantitated as described in Example 3 by liquid scintillation counting and determination of mRNA concentrations relative to a standard curve. Figure 7 presents the results of this analysis. The results are consis¬ tent with those shown in Figure 6. AdoMetase mRNA was present in both transgenic plants at the breaker stage of fruit ripening with the concentrations lower in ESKN #18. At the orange and ripe stages of fruit ripening the levels of AdoMetase mRNA drop in the ESKN transgenic plant, relative to the level at breaker stage and the levels in the fruit from the SESKN transgenic plant. The AdoMetase mRNA levels stay relatively constant in the SESKN transgenic plant. B. Relative Levels of SAMase Activity in Ripening Transgenic Tomatoes. To determine whether the presence of AdoMetase enzyme activity correlated with the level of Ado¬ Metase mRNA, a 14C-SAM-based AdoMetase assay was performed using extracts from four different fruit stages from a single pGA-ESKN transgenic plant. Plant tissues to be assayed for AdoMetase enzyme activity were frozen and ground to a powder in liquid nitrogen. The ground tissue was then suspended in 1.5 volumes of 200 mM Tris-HCl (pH 7.5) , 10 mM DTT, and 10 mM EDTA. The suspension was vortexed vigorously then subjected to centrifugation at 40,000 x g at 4°C for 20 minutes. The following was added to 50 μl of extract: 5 μl of 14 C-SAM (DuPont-New England Nuclear, NEC-363) at 20 μCi/ml and a specific activity of 58.0 mCi/mmol. The reaction was incubated at 37°C for 1 hour then 40 μl of the reaction was spotted on a cellulose think layer chromatography (TLC) plate (J.T. Baker, Inc. , Phillipsburg, N.J., Baker-Flex Cellulose F) and resolved for 3 hours in 70:70:20:40, butanol:- acetone:acetic acid:water. The MTA and MTR spots were identified using autoradiography, excised, and counted using liquid scintillation. Figure 8 shows the level of AdoMetase activity in mature green, breaker, orange, and ripe fruit. The level of AdoMetase activity is defined as the percent conversion of SAM (S-adenosylmethionine) to MTA (5'-Methylthioadenosine) and MTR (5'-Methyl- thioribose) . The decreasing level of AdoMetase activity from breaker to ripe fruit in the ESKN transgenic plant is consistent with the AdoMetase mRNA levels shown in Figure 7. Untransformed tomato fruit extracts do not degrade SAM to MTA or MTR at any stage of ripening when used in this assay. C. Ethylene Production in Ripening Transgenic Fruit. Ethylene produced from transgenic tomatoes carrying the AdoMetase gene under the regulation of the SE8 promoter (Figure 4) was determined as described in Example 4. Greenhouse grown tomatoes from 4 transgenic lines were tested. The results of the analysis are presented in Figures 9A to 9D. Each of the four graphs shown in Figure 9 represent the comparison of fruit from one pGA-SESKN trans¬ genic line (Es 19-2, LS 4-2, ES 35-1 and ES 22A-1) with the fruit from untransformed controls. The control values (open squares) are the same in each of the four graphs and represent the average of six fruit from two different plants. The values from each transgenic line (closed symbols) are the average of ethylene determinations for three fruit. Error bars represent one standard deviation of the data. The data represent a time period of ten days after the breaker stage of fruit ripening (post- breaker) . These data demonstrate a reduction in the amount of ethylene production in transgenic tomatoes versus normal fruit over the ten day period. D. Post-Harvest Shelf-life of SESKN Tomatoes. Tomatoes from the SESKN transgenic plants that synthesized less ethylene were assessed for their shelf life properties when stored at 22°C. Three fruit from each from SESKN lines 35-1, 22A-1 and LS4-2 were compared with tomatoes from two untrans¬ formed, normal plants (M16 and M15) . Senescence was determined each day by visual examination of the fruit for the occurrence of contraction and wrinkles on the tomato skin. The results of these senescence assessments are shown in Figure 10. As can be seen from the results in the figure, the bar graph shows the time for the fruit to achieve each stage: all fruit were picked at the breaker stage. For instance, line 35-1 took 18 days to ripen (Ripe stage) but then senescence developed at day 27. Line 22A-1 took 7 days to turn orange, 13 days to turn red, then 52 days to senescence. Even at 55 days post-breaker, the 22A-1 tomatoes remained firm and appeared to be suffering more from dehydration than from the softening-induced senes¬ cence of the normal tomatoes. Firmness was not measured for the tomatoes from the five plants described above, however, the firmness was noted to be much greater in the fruit from the transgenic lines. While the invention has been described with reference to specific methods and embodiments, it will be appreciated that various modifications and changes may be made without departing from the invention.

Claims: IT IS CLAIMED: 1. A transgenic fruit-bearing plant containing a DNA seguence which encodes a desired gene product, where expression of said DNA sequence is under the transcriptional control of an E8 promoter and where said DNA sequence is not the DNA sequence normally contiguous with the E8 promoter. 2. The transgenic plant of claim 1, wherein said transgenic plant is a tomato plant. 3. The transgenic plant of claim 1, where the E8 promoter consists essentially of the sequence presented in Figure 13. 4. The transgenic plant of claim 1, where the E8 promoter consists essentially of bases 1189 to 2214 in Figure 13. 5. The transgenic plant of any of claims 1 to 4, where said DNA sequence expresses a S-adenosyl¬ methionine hydrolase enzyme which hydrolyses S- adenosylmethionine to homoserine and 5'-methyl- thioadenosine. 6. The transgenic plant of claim 5, where said enzyme is derived from a bacteriophage selected from the group consisting of Escherichia coli bacterio¬ phage T3, coliphage BA14, Klebsiella phage Kll, and Seratti phage IV. 7. Transgenic plant cells containing a DNA seguence which encodes a desired gene product, where expression of said DNA sequence is under the transcriptional control of an E8 promoter, and where said DNA sequence is not the DNA sequence normally contiguous with the E8 promoter. 8. The transgenic plant cell of claim 7, where said cell is a fruit cell. 9. The transgenic plant cell of claim 8, where said fruit is a tomato. 10. The transgenic cells of claim 7, where the E8 promoter consists essentially of the sequence presented in Figure 13. 11. The transgenic cells of claim 7, where the E8 promoter consists essentially of bases 1189 to 2214 in Figure 13. 12. The transgenic cell of any of claims 7 to 11, where said DNA sequence encodes a S-adenosyl¬ methionine hydrolase enzyme which hydrolyses S- adenosylmethionine to homoserine and 5 , -methyl- thioadenosine. 13. A vector useful for transformation of a plant host cells, comprising a first DNA sequence containing a gene useful for genetic selection in plant cells, where said first DNA sequence is flanked by regulatory elements effective to allow expression of the sequence in a plant host, and a second DNA sequence which encodes a desired gene product, where expression of said second DNA sequence is under the transcriptional control of an E8 promoter and where said DNA sequence is not the DNA sequence normally contiguous with the E8 promot¬ er. 14. The vector of claim 13, where the E8 promoter consists essentially of the sequence presented in Figure 13. 15. The vector of claim 13, where the E8 promoter consists essentially of bases 1189 to 2214 in Figure 13. 16. The vector of claim 13, wherein said gene useful for genetic selection in plant cells confers kanamycin resistance. 17. The vector of any of claims 13 to 16, where said second DNA sequence encodes a S-adenosyl¬ methionine hydrolase enzyme which hydrolyses S- adenosylmethionine to homoserine and 5'- ethylthio- adenosine. 18. The vector of claim 17, where said second DNA sequence encodes the protein sequence presented in Figure 11. 19. The vector of claim 17, where said enzyme is derived from a bacteriophage selected from the group consisting of Escherichia coli bacteriophage T3, coliphage BA14 , Klebsiella phage Kll, and Seratti phage IV. 20. A method for regulating expression of a gene product in fruit cells of a plant, comprising: providing a vector of any of claims 13-19, transforming plant host cells with said vector, and growing the transformed host cells to produce a transgenic plant bearing fruit, wherein plant fruit cells are capable of expressing said desired gene product. 21. The method of claim 20, wherein the transformation of a plant host is carried out by a direct transformation methodology selected from the group consisting of an Agrobacteriujn-mediated transformation, electroporation, microinjection, and microprojectile bombardment. 22. A duplex DNA fragment containing (i) a DNA sequence which encodes a desired gene product, and (ii) adjacent said DNA sequence, a promoter effective to promote transcription of said DNA, where said promoter is an E8 promoter, and where said DNA sequence is not the DNA sequence normally contiguous with the E8 promoter. 23. The DNA fragment of claim 22, where the E8 promoter consists essentially of the sequence presented in Figure 13. 24. The DNA fragment of claim 22, where the E8 promoter consists essentially of bases 1189 to 2214 in Figure 13. 25. The DNA fragment of any of claims 22 to 24, where said DNA sequence encodes a S-adenosyl¬ methionine hydrolase enzyme which hydrolyses S- adenosylmethionine to homoserine and 5'-methylthio- adenosine.

Inventors: BESTWICK RICHARD KEITH, FERRO ADOLPH J, BESTWICK, RICHARD, KEITH, FERRO, ADOLPH, J.
Applicants: EPITOPE INC, EPITOPE, INC.
Application year: 1994
Main classification: C12N15
IPC codes: A01H5, C12N5, C12N9, C12N15