PEPTIDES FOR NEUTRALIZING THE TOXICITY OF LIPID A

Abstract: The present invention is concerned with a peptide composition which includes a peptide having units of the formula: (a) (A)n wherein A is Lysine or Arginine and n is an integer with a minimum value of 7; (b) (AB)m wherein A is Lysine or Arginine and B is a hydrophobic amino acid selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; m is an integer with a minimum value of 3; and (c) (ABC)p wherein A is a cationic amino acid which is Lysine or Arginine; B and C are hydrophobic amino acids which may be the same or different and are selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; p is an integer with a minimum value of 2. The compositions of the invention bind Lipid-A of endotoxins.

Description: PEPTIDES FOR NEUTRALIZING THE TOXICITY OF LIPID A FIELD OF THE INVENTION The present invention is concerned with providing peptides that are useful as therapeutic and/or prophylactic agents because of their ability to bind and neutralize the toxic activity of endotoxin. BACKGROUND OF THE INVENTION Septic shock is a well defined clinical syndrome that is caused by the release of endotoxin or lipopolysaccharide (LPS) by gram negative bacteria. It is known that the endotoxin which is the major antigen which is present in the outer membrane of gram-negative bacteria, is a glycophospholipid which is extremely toxic to mammalian hosts by virtue of its ability to bind, via its toxic moiety Lipid A, on target cells of the immune system such as macrophage and monocytes. The binding results in the massive release of cytokines such as Tumor Necrosis Factor (TNF) , Interleukin 1 and 6 (IL-1 and IL-6) as well as gamma Interferon (IFN-gamma), which are the central mediators of LPS-induced shock which can be lethal to the host. The mortality rate in humans due to LPS-induced shock as a consequence of bacterial βepsis, has been estimated in 30-50% of the cases with documented sepsis within 24-48 hours from the onset of the symptoms of the infection. It is also known that endotoxin is a harmful contaminant that has been detected in biologicals and other preparations for parenteral use in humans and animals. It is known that cationic molecules such as the homologous polymers of basic amino acids, such as, Lysine, have the ability to interact with cell membranes that contain anionic phospholipidβ. As a result of the interaction between cationic structures and glycophospholipids, one may speculate that homologous polymers of basic (cationic) amino acids might serve as agents to bind and detoxify bacterial LPS. These linear homopolymers of the basic amino acids have the capability of promoting cell to cell fusion and can cause a disruption of the cell membrane of the interacting cells which leads to cell death. The applicant has discovered that certain peptides which contain the basic amino acid units (homopolymer units) as well as the basic and hydrophobic amino acids (heteropolymer units) according to the formulae: (A) , (AB) , and (ABC) where A is any aliphatic cationic amino acid (at a pH of about 7.0); B and C are any hydrophobic amino acid, both (the aliphatic cationic amino acid and the hydrophobic amino acid) that are characterized by solvent parameter values equal to or greater than +1.5kcal/mol and -1.5 kcal/mol respectively, will bind to the Lipid A moiety of LPS and will detoxify Lipid A in vitro and in vivo and thus neutralize the effects of endotoxin. The minimal effective peptide sequence to bind Lipid A has been found to be six to seven amino acid residues containing a minimum of three aliphatic cationic amino acids, with a ratio of aliphatic cationic amino acids to hydrophobic amino acids of equal to or greater than 0.5 (R wherein c is the number of cationic amino acids in the peptide and h is the number of hydrophobic amino acids in the peptide). This ratio is the minimum required for binding Lipid A although high affinity binding of the peptide to Lipid A is reached with sequences of ten amino acids with a ratio (R ) equal to or greater than 1.0. Accordingly, it is a primary object of the invention to identify peptides that will bind Lipid A. It is also an object of the invention to provide novel compositions for the treatment or prevention of septic shock which are based on the peptides which have been identified as a class of peptides that are useful in the present invention. It is also an object of the invention to provide novel methods for the treatment or prevention of septic shock which are based on the use of the peptides which have been identified as a class of peptides that are useful according to the present invention. It is also an object of this invention to provide novel compositions and methods for the detoxification of biologicals. These and other objects of the invention will become apparent from the appended specification. SUMMARY OF THE INVENTION The present invention provides a novel method for binding endotoxin using linear or cyclic peptides having units of the formula: (a) (A) wherein A is Lysine or Arginine and n is an integer with a minimum value of 7; (b) (AB) wherein A is Lysine or Arginine and B is a hydrophobic amino acid selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; m is an integer with a minimum value of 3; and (c) (ABC) wherein A is a cationic p amino acid which is Lysine or Arginine; B and C are hydrophobic amino acids which may be the same or different and are selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; p is an integer with a minimum value of 2. The preferred peptides for use in the invention will also have a ratio of aliphatic cationic amino acids to hydrophobic amino acids (Rc/ ,n_ . ) of at least 0.5 and within the range of about 0.5 to 10.0 which is computed by using the solvent parameter values only for those amino acids which are present in the peptides which have a solvent parameter value equal to or greater than +1.5kcal/mol (lysine and arginine) and -1.5kcal/mol (valine, isoleucine,leucine, tryrosine, phenylalanine and tryptophane) as measured according to Levitt, J. Mol. Biol. 104,59 (1976), which is incorporated by reference. The peptide units which are represented by formula (a), (b) and (c) represent discrete peptides which will bind endotoxin as estimated by the LAL inhibition test and have specific formulas which are identical with the units of formula (a), (b) and (c) as well as peptides which will bind endotoxin in the LAL inhibition test and which include as a part of their structure units of formula (a), (b) and (c), in addition to other amino acids, are included within the peptides which comprise the invention. For in vivo use, the preferred peptides should not exhibit hemolytic activity when equal volumes of a solution of the peptide in isotonic saline, at a minimum peptide concentration of O.lmg/ml and a solution of 10%w/w fresh human erythrocytes in isotonic saline are incubated at 37°C. for 30 minutes and no rupture of the erythrocytes and release of hemoglobin is detected visually or by use of a spectrophotmeter (540nm). The minimum values for n, m and p have been determined experimentally on the basis of the observation that when the peptide is linear, it will have at least 7 amino acid units and when said peptide is cyclic or a polymer having several cycles, i.e. 2 to 6 cycles, it will have a ring structure that has a minimum of 6 amino acid units and a maximum of 7 amino acid units; said peptides having a ratio of aliphatic cationic amino acids to hydrophobic amino acids which is equal to or greater than 0.5. When the peptides are of the formula (A) , (AB) or (ABC) , i.e. when these formulas do not represent units of a larger peptides, n will be from 7 to 500; m will be from 3 to 200 and p will be from 2 to 100. The peptides of formula (A) when n is from 7 to 10 are novel peptides and the peptides of formulas (AB) and (ABC) are novel peptides. The invention also includes novel pharmaceutical compositions which are based on the disclosed peptides and methods for treating or preventing septic shock which are based on the use of the peptides described herein which show no substantial hemolytic activity according to the procedure for testing for hemolytic activity which is set forth above. DETAILED DESCRIPTION OF THE INVENTION The applicant has discovered what is being characterized as the minimal peptide structure which will bind endotoxin. These structures are comprehended by peptides having units of the formulas: (a) (A) wherein A and n are as defined above; (b) (AB)nt wherein A, B and m are as defined above; and (c) (ABC) wherein A, B and p are as defined above. These peptides include novel synthetic peptides and peptides which are known. Examples of the peptides are listed below. Those peptides which are not novel are marked by an asterisk: (Lys) 1Q (SEQ ID NO: 1); (Lys) 3Q * (SEQ ID NO: 2); ( Lvs) 434 * (SE0 - ID NO: 3 >' * (Lys-Asp) 5 (SEQ ID NO: 4); (Lys-Phe) 5 (SEQ ID NO: 5); Lys-Phe-Leu-Lys-Lys-Thr-Leu (SEQ ID NO: 6); (Lys-Phe-Leu) 2 -Lys (SEQ ID NO: 7); (Lys-Phe-Leu) 3 -Lys (SEQ ID NO: 8); (Arg-Tyr-Val) 3 (SEQ ID NO: 9); (Lys-Phe-Phe) 3 -Lys (Seq ID NO: 10); (Lys-Leu-Leu) 3 (SEQ ID NO: 11); (Lys) £ (Phe-Lys), (SEQ ID NO: 12); Cys-(Lys) -Cys s —-—s ( SEQ ID NO: 13); Cys-Lys-Phe-Lys-Lys-Cys B s (SEQ ID NO: 14); Lys-Phe-Lys-Cys-Lys-Phe-Lys-Phe-Lys-Cys s s (SEQ ID NO: 15); Lys-Leu-Lys-Cys-Lys-Leu-Lys-Leu-Lys-Cys a a (SEQ ID N0 . 16) . Arg-Thr-Arg-Cys-Arg-Phe-Lys-Arg-Arg-Cyβ a a ( SE Q ID NO: 17 ). Lys-Cys-(Lys-Phe-Lys) -Cys-Lys s —S (SEQ ID NO: 18); Cys-(Lys) -(Phe) -Cys a 1 * g ( SE Q ID N O : 19 ) ; Cys-(Lys-Phe-Leu) -Lys-Cys s s (SEQ ID NO: 20); Val-Lyβ-Ala-Leu-Arg-Val-Arg-Arg-Leu (SEQ ID NO: 21); Lys-Ser-Leu-Ser-Leu-Lys-Arg-Leu-Thr-Tyr-Arg (SEQ ID NO:22); Lys-Val-Arg-Lys-Ser-Phe-Phe-Lys-Val (SEQ ID NO: 23); Phe-Leu-Lys-Pro-Gly-Lys-Val-Lys-Val (SEQ ID NO: 24); Lys-Glu-Leu-Lys-Arg-Ile-Lys-Ile (SEQ ID NO: 25); Lys-Trp-Lys-Ala-Gln-Lys-Arg-Phe-Leu (SEQ ID NO: 26); Lys-Trp-Lys-Ala-Gln-Lys-Arg-Phe-Leu-Lys (SEQ ID NO: 27); Lys-Arg-Leu-Lys-Trp-Lys-Tyr-Lys-Gly-Lys-Phe (SEQ ID NO: 28) ; and Cys-Gln-Ser-Trp-Lys-Ser-Ser-Glu-Ile-Arg-Cys-Gly-Lyβ g s (SEQ ID NO: 29). The peptides for use in the present invention may be synthesized by classical methods of peptide chemistry using manual or automated techniques as well as by DNA recombinant technology. The synthetic procedure comprises solid phase synthesis by Fmoc chemistry, cleavage (TFA 95%+Et-(SH) 2 5%), followed by vacuum evaporation. Thereafter, the product is dissolved in 10% acetic acid, extracted with ether, concentrated at 0.1 mg/ml at pH of 6.0- 7.5. Stirring under filtered air followed for 1 to 6 hours in case of the Cy8teine-containing peptides and finally desalting by reverse phase chromatography is carried out. A particular automated method of preparing peptides for use in the present invention is based on the use of an automatic synthesizer (Milligen Mod.9050 (MILLIPORE, Burlington, MA) on a solid phase support of polyamide/Kieselguhr resin (2.0g). The amino acids used in the synthesis of the peptide analogs are Fmoc-aa-Opfp derivatives ( -Fluorenylmethylcarbonyl-aa-O-pentafluorophenyl ester) of each amino acid(aa) involved in the considerd sequences using 0.8 mol of each amino acid to sequentially form the peptide. Each cycle of synthesis may be performed at room temperature (20°C) and involves the following steps of reaction: Step _1 - Deprotection The first aa Fmoc-protected at the amino group, was treated with a 20% solution of piperidine for 7 minutes in order to remove the Fmoc alpha-protecting group. Washing with dimethylformamide followed for 12 minutes to remove all traces of piperidine. Deprotection and washing were run continuously through the column containing the resin by means of a pump at a flow of 5ml/min. Step - Activation of the Fmoc-aa-Opfp derivative The amino and carboxy-protected amin o acid due, according to the desired sequence, was activated after its dissolution in 5 ml of dimethylformamide, by a catalytic amount of hydroxybenzotriazol (0.5 ml of a 5% w/v solution in dimethylformamide). Step 3_ ~ Acylation The activated and protected Fmoc-aa-Opfp derivative was then recycled for 30 minutes through the column by the pump at 5ml/min in order to obtain coup[ling of the introduced aa at the alpha-amino group (previously depriotected as reported in Step 1) of the amino acid preceding the new one in the desired sequence. Step 4_ - Washing Washing of the matrix in the column followed by dimethylformamide for 2 minutes at 5 ml/min before a new cycle began. At the completion of the synthesis, the peptide on the resin support was cleaved by 95% Trifluoroacetic acid (TFA) with 5% Ethane dithiol as a scavenger, if Cysteine residues were present in the aa sequence, at room temperature for 2 hours. After separation of the cleaved peptide from the resin by filtration, the solution was concentrarted by vacuum evaporation to dryness. The collected solid residue was then solubilized in 10% acetic acid at a concentration of 10-20 mg/ml and several extractions by diethyl ether followed (six to eight extractions with half the volume of the peptide solution) in order to remove the βwcavenger Ethane dithiol. The peptide solution was then neutralized by 0.1 N ammonium hydroxide and adjusted to the concentration of roughly 0.1 mg/ml. The solution was then stirred under air for 1 to 6 hours in order to obtain the selective oxidation of the two sulfhydryl groups b elonging to the Cys residues of the sequence. In this way, only monomeric oxidized peptides were obtained with no traces of polymeric material. The solution of oxidized peptide was then desalted by reverse-phase chromatography on SEP-PAK C-18 cartridges (MILLIPORE) and finally freeze dried. The products were analyzed by high-performance liquid chromatography (HPLC) analysis as well as by chemical analysis of the synthetic structures. Fast atom bombardment was used to confirm the calculated mass of the peptides. The polymeric peptide of the formula (A) when n was 10 was prepared by solid phase FMOC synthesis and the peptides when n was 30 and 434 were obtained co merically from Bachem, Boubendorf, Switzerland. The peptides described herein which exhibit the absence or a low level of hemolysis may be used in the treatment of septic shock in mammals including humans at doses of about 0.lμg-2.0mg/kg of body weight or may be used at a level of about lOμg to about O.lmg/kg of body weight and the amount may be administered in divided doses on daily basis. The peptides may be administered prophylactically to patients who may be exposed to or have been exposed to organisms which may cause septic shock or to detoxify bacterial endotoxins by the use of the same dose set forth above in vivo. In vitro detoxification or prevention of endotoxin contamination may be carried out at a level of which is effective to achieve the desired result. The amount may be based on routine experimentation based on the premise that 1 mole of Lipid A endotoxin is bound by 1 mole of peptide. The particular dose of a particular peptide may be varied within or without the range that is specified herein depending on the particular application or severity of a disease and the condition of the host. Those who are skilled in the art may ascertain the proper dose using standard procedures. The compounds may be administered intravenously and parenterally using well known pharmaceutical carriers or inert diluents. Oral administration is not preferred because the peptides will tend to be degraded by the enzymes of the alimentary tract. Water or isotonic saline are preferred diluents and a concentration of 0.1 mg per ml may be used. Preferably, the compounds will be stored in a dry form and will be dissolved in the diluent immediately prior to administration. Generally, for the production of a vaccine against endotoxin, complexes of Lipid-A and LPS with the peptides of the invention may be made using stoichiometric amounts of Lipid-A or LPS with the peptide. The amounts of complex also able to induce antibody in a host are not critical; about 1 meg of Lipid-A in the complex with the peptide will be effective in safely inducing antibodies in a host. The detoxification activity of the peptides has been confirmed in vitro by the inhibition of the LPS-activated enzymatic cascade leading to clot formation in Limulus Amebocyte Lysate (LAL) assay which is described in Science, 259, pp361-365 (1993), which is incorporated by reference. Detoxification activity in vivo has been confirmed by inhibition of the Lipid A-mediated hemorragic dermonecrosis in the rabbit. Inhibition in the LAL assay is very sensitive method of detecting even small differences in LPS activity (LPS detection level=10 pg/ml) and corelates with the inhibition of cytokine-mediated pyrogencity in the rabbit. This test has been accepted by the U.S. Food and Drug Administration as an end product endotoxin test for human and animal parenteral drugs. Skin hemorraghic necrosis in the rabbit, which was first described by G. Schwartzman as a local reaction to LPS toxicity (Proc. Soc. Exp. Biol. Med. , 25:560, 1928) was chosen because Lipid A is responsibile for this inflammatory process in the derma (an area where cells rich in LPS-specific CD14-receptor proteins like leukocytes and macrophages predominate) through induction of the release of TNF and IFN-gamma. These factors are the central mediatiors of LPS induced shock in sepsis caused by Gram-negative bacteria. The inhibition of LPS-induced cytokines (TNF, Interleukin-1, Interleukin-6 and the like) result in a significant increase in the survival rate in animal models that are challengerd by a lethal dose of LPS. The invention also includes the use of the peptides to contact systems containing endotoxin dispersed in a fluid for the purpose of detoxifying the endotoxin. This procedure may be used to detoxify biopharmaceuticals such as vaccines, solutions of drugs, injectable nutrient solutions, and the like. The invention further comprises the use of the peptides as additives for fluids which will support bacterial growth that will produce endotoxin. The presence of the non-toxic peptide will detoxify any endotoxin which is subsequently elaborated. DESCRIPTION OF THE PREFERRED EMBODIMENTS Example 1 Table 1 contain the results of the testing of novel amino acid sequences of the invention. These peptides include linear cationic homopolymeric peptides of various sizes which have high affinity for the Lipid A moiety of endotoxin and result in the detoxificartion of endotoxin. However, certain linear cationic homopolymeric peptides show a strong hemolytic activity on human erythrocytes. Their stability to proteolysis in human serum or whole bloiod is also important for in vivo use. Those peptides that exhibit high levels of hemolytic activity (above 1.5mg/ml) are not useful in vivo for binding endotoxin but are useful in vitro for the detoxification of biologicals by causing the peptides to bind endotoxin in the biological and form a complex which can be removed by conventional techniques such as by filtration with a suitable ultrafilter such as a anisotropic filter having an average pore size of 0.01 μm or can be separated as a complex on solid phase matrixes. Table 1 ** ** Ka LAL Inh. t/2 Hemolys Peptides c/h (xlO 7 M "1 ) (w/w) (min) (mg/Ml (Lys) 10 (SEQ ID NO: 1) 1.20 5 >1.50 (Lys) 30 (SEQ ID NO: 2) 1.35 30 0.17 (Lys) 434 (SEQ ID NO: 3) 1.38 45 0.07 (Lys-Glu) 5 (SEQ ID NO: 4) 0.23 60 >1.50 (Lys-Phe) 5 (SEQ ID NO: 5) 1.00 1.57 2 0.02 (Lys-Phe-Leu-Lys-Lys-Thr-Leu (SEQ ID NO: 6) 1.00 0.16 00 N.D. N.D. (Lys-Phe-Leu) 2 -Lys (SEQ ID NO: 7) 0.75 0.10 00 7 >1.50 (Lys-Phe-Leu) 3 -Lys (SEQ ID NO: 8) 0.67 1.17 4 0.03 (Arg-Tyr-Val) 3 (SEQ ID NO: 9) 0.50 0.26 00 35 1.00 (Lys-Phe-Phe) 3 -Lys (Seq ID NO: 10) 0.67 0.33 120 0.04 (Lys-Leu-Leu) 3 (SEQ ID NO: 11) 0.50 0.16 110 0.11 (Lys) 6 (Phe-Lys) 2 (SEQ ID NO: 12) 1.50 0.92 2 0.02 Cys-(Lys) -Cys s s (SEQ ID NO: 13) 0.19 15 >1.50 Cys-Lys-P e-Lys-Lys-Cys s s ( SEQ ID N0: 14) 3.00 0.02 50 >1.50 Lys-Phe-Lys-Cys-Lys-Phe-Lys-P e-Lys-Cys g g ( SE Q ID N0 . 15 ) 1.67 0.25 60 >1.50 Lys-Leu-Lys-Cys-Lys-Leu-Lys-Leu-Lys-Cys s s (S E Q ID N0: 16) 1.67 0.90 100 >1.50 Arg-Thr-Arg-Cys-Arg-P e-Lys-Arg-Arg-Cys s s (SEQ ID N0: 17 ) 2.50 1.05 75 1.00 Lys-Cys-(Lys-Phe-Lys) -Cys-Lys s s (SEQ ID N O : 18) Cys-(Lys) -(Phe) -Cys g g ( SE Q ID N0 . 19) Cys-(Lys-Phe-Leu) -Lys-Cys s g (SEQ ID N O : 20 ) Lys-Phe-Leu-Lys-Lys- Thr* (Glu-Tyr-Val) 3 * Cys-Lys-Phe-Leu-Lys-Cys* g g ♦control Rc/h defines the ratio between aliphatic cationic and hydrophobic amino acids present in a given sequence. Only amino acids with solvent parameter values assigned by Levitt (J. Mol. Biol. 104,59(1976) equal to or greater than +1.5kcal/mol (lysine and arginine) and -1.5kcal/mol (valine, isoleucine, leucine, tryrosine,phenylalanine and tryptophane) were considered for calculating the ratios. Example 2 This example shows the activity of primary amino acid sequences which occur in natural proteins. These sequences specifically bind endotoxins of heterologous Gram-negative bacteria. In the footnote to Table II, the proteins where the sequnces of the peptides occur naturally are identified. Each of the peptides of Table II were prepared synthetically using the procedures that have been set forth above. The data in Table II shows the activity of the peptides: Table I I Ka LAL Inh . t/2 Hemolysi Peptides R c/h ( xlO 7 M ~l ) (w/w) ( min) (mg/Ml ) 1. Val-Lys-Ala-Leu-Arg-Val-Arg-Arg-Leu (SEQ ID NO: 21) 100 0.02 100 35 >1.50 2. Lys-Ser-Leu-Ser-Leu-Lys-Arg-Leu-Thr-Tyr-Arg (SEQ ID NO: 22) 100 0.04 200 100 >1.50 3. Lys-Val-Arg-Lys-Ser-Phe-Phe-Lys-Val (SEQ ID NO: 23) 1.00 0.08 100 60 0.50 4. Phe-Leu-Lys-Pro-Gly-Lys-Val-Lys-Val (SEQ ID NO: 24) 0.60 0.05 100 105 >1.50 5. Lys-Asp-Leu-Lys-Arg-Ile-Lys-Ile SeqID NO: 25) 1.33 0.05 100 70 >1.50 6. Lys-Trp-Lys-Ala-Gln-Lys-Arg-Phe-Leu (SEQ ID NO: 26) 1.33 0.03 100 50 >1.50 7. Lys-Trp-Lys-Ala-Gln-Lys-Arg-Phe-Leu-Lys (SEQ ID NO: 27) 1.67 0.23 10 40 >1.50 8. Lys-Arg-Leu-Lys-Trp-Lys-Tyr-Lys-Gly-Lys-Phe (SEQ ID NO: 28) 1.50 1.83 1 55 0.50 9. Cys-Gln-Ser-Trp-Lys-Ser-Ser-Glu-Ile-Arg-Cys-Gly-Lys s s (SEQ ID N0 . 29 ) 1.50 2.10 1 55 0.50 a. Ile-Gln-Leu-Pro-His-Lys-Lys-IIe* 0.67 0 >1000 N.D. N.D. b. His-Tyr-Arg-Ile-Asn-Pro-Thr-Val-Lys* 0.67 0 >1000 N.D. N.D. c. Cys-Arg-Gln-His-Gly-Thr-Tyr-Ile-Asn-Cys-Leu-His-Val* 0.25 0 >1000 N.D. N.D. g g * Control 1. CD14 67-75 Human E. Ferrero and S.M. Goyert, Nucl. Acid Res. 16,4173 (1988) 2. CD14 68-78 Mouse 3.LBP 92-100 R.R. Schumann et al. Science, 249,1429 (1990); S.D. Wright et al. ibid, 249 1431 (1990) 4. LBP 376-384 Human " " " " 5. BPI 27-34 Human C.E. Ooi, J. Weiss, M.E. Doerfler, OP. Elsbach, J. Exp. Med. 174,649 (1991) 6. BPI 90-98 Human " " " " " 7. BPI 90-99 Human " " " " " 8. LALF 41-51 J. Aketagawa et al., J. Biol. Chem,261,7357 (1986) 9. LEBP-PI 5-17 Crab C.A.S.A. Minetti, Y. Lin, T. Cislo. T.Y. Liu, J. Biol. Chem, 266, 20773 (1 a. BPI 153-160 Human SEQUENCE LISTING (1) GENERAL INFORMATION: (i) APPLICANT: Porro, Massimo (ii) TITLE OF INVENTION: Peptides For Neutralizing The Toxicity of Lipid A (iii) NUMBER OF SEQUENCES: 29 (iv) CORRESPONDENCE ADDRESS: (A) ADDRESSEE: Hedman, Gibson & Costigan (B) STREET: 1185 Avenue of the Americas (C) CITY: New York (D) STATE: New York (E) COUNTRY: USA (F) ZIP: 10036 (v) COMPUTER READABLE FORM: (A) MEDIUM TYPE: Diskette, 3.50 inch, 1.44 Mb storage (B) COMPUTER: IBM PS/2 (C) OPERATING SYSTEM: DOS (D) SOFTWARE: Word Perfect 5.1 (vi) CURRENT APPLICATION DATA: (A) APPLICATION NUMBER: (B) FILING DATE: (C) CLASSIFICATION: (vii) PRIOR APPLICATION DATA: (A) APPLICATION NUMBER: (B) FILING DATE: (viii) ATTORNEY/AGENT INFORMATION: (A) NAME: Costigan, James V. (B) REGISTRATION NUMBER: 25,669 (C) REFERENCE/DOCKET NUMBER: 576-003 (ix) TELECOMMUNICATION INFORMATION: (A) TELEPHONE: (212) 302-8989 (B) TELEFAX: (212) 302-8998 (2) INFORMATION FOR SEQ ID NO:l: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:l: (Lys) 1Q (SEQ ID NO: 1) (3) INFORMATION FOR SEQ ID NO:2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 30 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:2: (Lys) 30 (SEQ ID NO: 2) (4) INFORMATION FOR SEQ ID NO:3: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 434 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:3: (Lye) 4.34 ( S Q ID NO: 3 ) (5) INFORMATION FOR SEQ ID NO:4: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:4: (Lys-Asp) 5 (SEQ ID NO: 4) (6) INFORMATION FOR SEQ ID NO:5: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:5: (Lys-Phe) 5 (SEQ ID NO: 5) (7) INFORMATION FOR SEQ ID NO:6: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 7 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:6: Lyβ-Phe-Leu-Lyβ-Lyβ-Thr-Leu (SEQ ID NO: 6) (8) INFORMATION FOR SEQ ID NO:7: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 7 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:7: (Lys-Phe-Leu) 2 -Lys (SEQ ID NO: 7) (9) INFORMATION FOR SEQ ID NO:8: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 7 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:8: (Lys-Phe-Leu) 3 -Lys (SEQ ID NO: 8) (10) INFORMATION FOR SEQ ID NO:9: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 6 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:9: (Arg-Tyr-Val) 3 (SEQ ID NO: 9) (11) INFORMATION FOR SEQ ID NO:10: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 7 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:10: (Lys-Phe-Phe) 3 -Lys (Seq ID NO: 10) (12) INFORMATION FOR SEQ ID NO:11: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 11 amino acids (B) TYPE: amino acid (C) TOPOLOGY:- circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:11: (Lys-Leu-Leu) 3 (SEQ ID NO: 11) (13) INFORMATION FOR SEQ ID NO:12: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:12: (Lys) e (Phe-Lys), (SEQ ID NO: 12) (14) INFORMATION FOR SEQ ID NO:13: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 17 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular ( ii ) SEQUENCE DESCRIPTION : SEQ ID NO: 13 : Cys- ( Lys ) -Cys a g ( SE Q ID NO : 13 ) (15) INFORMATION FOR SEQ ID NO:14: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 16 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circu1ar (ii) SEQUENCE DESCRIPTION: SEQ ID NO:14: Cys-Lys-Phe-Lys-Lys-Cys a a ( SE Q ID NO: 14) (16) INFORMATION FOR SEQ ID NO:15: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:15: Lys-Phe-Lys-Cys-Lys-Phe-Lys-Phe-Lys-Cys 8 a (SEQ ID NO: 15) (17) INFORMATION FOR SEQ ID NO:16: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:16: Lys-Leu-Lys-Cys-Lys-Leu-Lys-Leu-Lys-Cys a a (SEQ ID NO: 16) (18) INFORMATION FOR SEQ ID NO:17: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:17: Arg-Thr-Arg-Cys-Arg-Phe-Lyβ-Arg-Arg-Cys s s (SEQ ID NO: 17) (19) INFORMATION FOR SEQ ID NO:18: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:18: Lys-Cys-(Lys-Phe-Lys) -Cyβ-Lys B a (SEQ ID N O : 18 ) (20) INFORMATION FOR SEQ ID NO:19: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:19: Cys-(Lys) -(Phe) -Cys a i * a (SEQ ID NO: 19) (21) INFORMATION FOR SEQ ID NO:20: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 9 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:20: Cys-( yβ-Phe-Leu) -Lys-Cys a a ( SE Q ID N0 . 20) (22) INFORMATION FOR SEQ ID N0:21: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 9 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:21: Val-Lys-Ala-Leu-Arg-Val-Arg-Arg-Leu (SEQ ID NO: 21) (23) INFORMATION FOR SEQ ID NO:22: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 11 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:22: Lys-Ser-Leu-Ser-Leu-Lya-Arg-Leu-Thr-Tyr-Arg (SEQ ID NO:22) (24) INFORMATION FOR SEQ ID NO:23: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 9 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:23: Lyβ-Val-Arg-Lys-Ser-Phe-Phe-Lys-Val (SEQ ID NO: 23) (25) INFORMATION FOR SEQ ID NO:24: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 9 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:24: Phe-Leu-Lys-Pro-Gly-Lys-Val-Lys-Val (SEQ ID NO: 24) (26) INFORMATION FOR SEQ ID NO:25: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 8 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:25: Lys-Glu-Leu-Lys-Arg-Ile-Lys-Ile (SEQ ID NO: 25) (27) INFORMATION FOR SEQ ID NO:26: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 9 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:26: Lys-Trp-Lys-Ala-Gln-Lyβ-Arg-Phe-Leu (SEQ ID NO: 26) (28) INFORMATION FOR SEQ ID NO:27: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 10 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:27: Lys-Trp-Lyβ-Ala-Gln-Lys-Arg-Phe-Leu-Lys (SEQ ID NO: 27) (29) INFORMATION FOR SEQ ID NO:28: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 11 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:28: Lys-Arg-Leu-Lys-Trp-Lys-Tyr-Lys-Gly-Lys-Phe (SEQ ID NO: 28) (30) INFORMATION FOR SEQ ID NO:29: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 13 amino acids (B) TYPE: amino acid (C) TOPOLOGY: circular (ii) SEQUENCE DESCRIPTION: SEQ ID NO:29: Cys-Gln-Ser-Trp-Lys-Ser-Ser-Glu-Ile-Arg-Cys-Gly-Lys a a ( SEQ ID N O : 29)

Claims: Claims 1. Novel linear or cyclic peptides having units of the formula: (a) (A) wherein A is Lysine or Arginine and n is an integer with a value of 7 to 10; (b) (AB) wherein A is Lysine or Arginine and B is a hydrophobic amino acid selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; is an integer with a minimum value of 3; and (c) (ABC) wherein A is a cationic amino acid which is Lysine or Arginine; B and C are hydrophobic amino acids which may be the same or different and are selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; p is an integer with a minimum value of 2. 2. A peptide as defined in claim 1 which has units of the formula (A) where n has a value of 7 to 10. 3. A peptide as defined in claim 1 which has units of the formula (AB) m 4. A peptide as defined in claim 1 which has units of the formula (ABC) . p 5. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys) 1Q . (SEQ ID NO: 1) 6. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys-Glu) 5 . (SEQ ID NO: 4) 7. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys-Phe) 5 . (SEQ ID NO: 5) 8. A peptide as defined in claim 1 in which the peptide is of the formula: Lys-Phe-Leu-Lys-Lys-Thr-Leu. (SEQ ID NO: 6) 9. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys-Phe-Leu) 2 -Lys. (SEQ ID NO: 7) 10. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys-Phe-Leu) 3 -Lys. (SEQ ID NO: 8) 11. A peptide as defined in claim 1 in which the peptide is of the formula: (Arg-Tyr-Val) 3 . (SEQ ID NO: 9) 12. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys-Phe-Phe) 3 -Lys. (Seq ID NO: 10) 13. A peptide as defined in claim 1 in which the peptide is of the formula: (Lyβ-Leu-Leu) 3 (SEQ ID NO: 11) 14. A peptide as defined in claim 1 in which the peptide is of the formula: (Lys) 6 (Phe-Lys) 2 . (SEQ ID NO: 12) 15. A peptide as defined in claim 1 in which the peptide is of the formula: Cys-(Lys) -Cys s —s. ( SEQ ID NO: 13) 16. A peptide as defined in claim 1 in which the peptide is of the formula: Cys-Lys-Phe-Lys-Lyβ-Cys 8 a. (SEQ ID NO: 14) 17. A peptide as defined in claim 1 in which the peptide is of the formula: Lys-Phe-Lys-Cys-Lys-Phe-Lys-Phe-Lys-Cys a a. ( SEQ ID NO: 15) 18. A peptide as defined in claim 1 in which the peptide is of the formula: Lys-Leu-Lys-Cys-Lys-Leu-Lys-Leu-Lys-Cys s s. (SEQ ID NO: 16) 19. A peptide as defined in claim 1 in which the peptide is of the formula: Arg-Thr-Arg-Cys-Arg-Phe-Lys-Arg-Arg-Cys a g . (SEQ ID Nθ! 17) 20. A peptide as defined in claim 1 in which the peptide is of the formula: Lys-Cys-(Lys-Phe-Lys) -Cys-Lys s s. (SEQ ID NO: 18) 21. A peptide as defined in claim 1 in which the peptide is of the formula: Cys-(Lys) -(Phe) .-Cys s s. (SEQ ID NO: 19) 22. A peptide as defined in Claim 1 in which the peptide is of the formula: Cys-(Lys-Phe-Leu) -Lys-Cys a 1 β . ( SE Q ID NO: 20) 23. A peptide as defined in Claim 1 in which the peptide is of the formula: Val-Lyβ-Ala-Leu-Arg-Val-Arg-Arg-Leu (SEQ ID NO: 21) 24. A peptide as defined in Claim 1 in which the peptide is of the formula: Lys-Ser-Leu-Ser-Leu-Lys-Arg-Leu-Thr-Tyr-Arg (SEQ ID NO:22) 25. A peptide as defined in Claim 1 which is of the formula: Lys-Val-Arg-Lys-Ser-Phe-Phe-Lys-Val (SEQ ID NO: 23) 26. A peptide as defined in Claim 1 which is of the formula: Phe-Leu-Lys-Pro-Gly-Lys-Val-Lys-Val (SEQ ID NO: 24) 27. A peptide as defined in Claim 1 which is of the formula: Lys-Asp-Leu-Lys-Arg-Ile-Lys-Ile (SEQ ID NO: 25) 28. A peptide as defined in Claim 1 which is of the formula: LyB-Trp-Lys-Ala-Gln-Lys-Arg-Phe-Leu (SEQ ID NO: 26) 29. A peptide as defined in Claim 1 which is of the formula: Lys-Trp-Lys-Ala-Gln-Lys-Arg-Phe-Leu-Lys (SEQ ID NO: 27) 30. A peptide as defined in Claim 1 which is of the formula: Lys-Arg-Leu-Lys-Trp-Lys-Tyr-Lys-Gly-Lys-Phe (SEQ ID NO:28) 31. A peptide as defined in Claim 1 which is of the formula: Cys-Gln-Trp-Lys-Ser-Ser-Asp-Ile-Arg-Cys-Gly-Lys 8 s (SEQ ID NO: 29) 32. A peptide composition which includes a peptide having units of the formula: (a) (A) wherein A is Lysine or Arginine and n is an integer with a minimum value of 7. (b) (AB) wherein A is Lysine or Arginine and B is a hydrophobic amino acid selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; m is an integer with a minimum value of 3; and (c) (ABC) wherein A is a cationic amino acid which is Lysine or Arginine; B and C are hydrophobic amino acids which may be the same or different and are selected from the group consisting of Valine, Leucine, Isoleucine, Tyrosine, Phenylalanine and Tryptophan; p is an integer with a minimum value of 2 and a pharmaceutical carrier. 33. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 5. 34. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 6. 35. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 7. 36. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 8. 37. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 9. 38. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 10. 39. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 11. 40. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 12. 41. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 13. 42. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 14. 43. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 15. 44. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 16. 45. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 17. 46. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 18. 47. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 19. 48. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 20. 49. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 21. 50. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 22. 51. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 23. 52. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 24. 53. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 25. 54. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 26. 55. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 27. 56. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 28. 57. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 29. 58. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 30. 59. A peptide composition which includes a pharmaceutical carrier and a peptide of claim 31. 60. A method of treating or preventing septic shock which comprises administering to a host an effective amount of a peptide of claim 1 which does not exhibit hemolytic activity when tested by combining equal volumes of a solution of the peptide in isotonic saline, at a minimum concentration of O.lmg/ml and a solution of 10%w/w fresh human erythrocytes in isotonic saline are incubated at 37 β C.for 30 minutes and no rupture of the erythrocytes and release of hemoglobin is detected visually or by use of a spectrophotometer (540nm). 61. A peptide composition which comprises a peptide of the formula (Lys) 3Q and a pharmaceutical carrier. 62. A peptide composition which comprises a peptide of the formula (Lys) 4 _ 4 and a pharmaceutical carrier. 63. A method of treating or preventing septic shock which comprises administering to a host an effective amount of the peptide of claim 61. 64. A method of treating or preventing septic shock which comprises administering to a host an effective amount of a peptide of claim 62. 65. A method of treating or preventing septic shock which comprises administering to a host an effective amount of a peptide composition of claim 32 which does not exhibit hemolytic activity when tested by combining equal volumes of a solution of the peptide in isotonic saline, at a minimum concentration of O.lmg/ml and a solution of 10%w/w fresh human erythrocytes in isotonic saline are incubated at 37°C.for 30 minutes and no rupture of the erythrocytes and release of hemoglobin is detected visually or by use of a spectrophotometer (540nm).

Inventors: PORRO MASSIMO, PORRO, MASSIMO
Applicants: BIOSYNTH SRL, PORRO MASSIMO, BIOSYNTH S.R.L., PORRO, MASSIMO
Application year: 1994
Main classification: C07K14
IPC codes: A61K38, A61P31, C07K7