A DISEASE RESISTANCE GENE FROM MAIZE AS A SELECTABLE MARKER AND GENE IDENTIFICATION PROBE

Abstract: The H &cir& _M &cir& _1 &cir& _ gene in maize confers race-specific resistance to the pathogen, Cochliobolus carbonum. We have used transposon mutagenesis to tag, clone, and characterize several H &cir& _M &cir& _1 &cir& _ alleles. The gene can be used as a selectable marker in conjunction with the toxin produced by C. carbonum.

Description: A DISEASE RESISTANCE GENE FROM MAIZE AS A SELECTABLE MARKER AND GENE IDENTIFICATION PROBE TECHNICAL FIELD This invention relates to the isolation of a gene which controls resistance to both a fungus and a fungal disease toxin and its use as a selectable marker. BACKGROUND OF THE INVENTION Disease resistance genes are defined as Mendelian factors that coεegregate with the resistance trait. The gene HMl , which controls resistance to Cochliobolus carbonum Nelson race 1 was among the first disease resistance genes to be described. The disease caused by C^ carbonum race 1 can be devastating, resulting in yield losses of 80% or more due to plant death and grain mold. The dominant allele, Hml , and the duplicate factor, Hm2 are the only disease resistance genes that are known to be fixed at a high frequency in maize germplasm. Since the discovery of a race-specific compatibility factor that is produced by the fungus, the disease caused by C. carbonum race 1 has been the subject of detailed study. This compatibility factor permits the fungus to infect certain genotypes of maize that would otherwise be resistant. The role of HMl in providing resistance to the fungus is a function of its ability to cause reduced sensitivity to the compatibility factor. Further studies established that the presence of the compatibility factor confers the same race-specificity (for hml/hml corn) on the oat pathogen, Cochliobolus victoriae . The structure of this compatibility factor, HC-toxin, is known but the mode of action remains to be elucidated. Recently, an enzyme that inactivates HC-toxin has been identified in extracts from maize. The enzyme, HC-toxin reductase (HCTR), is detectable only in extracts from resistant (Hml ) genotypes. This establishes HCTR activity as the biochemical phenotype of Hml. DISCLOSURE OF THE INVENTION It has now been determined that the Hml gene can be used in conjunction with HC-toxin in a selectable marker system for use in maize transformation. When the cloned gene is linked to appropriate regulatory sequences for expression in plant cells and cotransformed into maize cells along with another quantitative or qualitative trait which is not selectable, it confers upon transformants a resistance to HC-toxin by virtue of the production of HCTR. The cells can continue to grow on medium containing the isolated HC-toxin. Nontransformed cells do not express the HCTR and are rapidly killed by the toxin the pathogen produces. The net effect is a tissue culture containing only transformed cells which can then be regenerated by known methods to form transformed shoots and even whole plants. Materials and Methods Genetic Materials and Propagation Mutator stocks used in this work were obtained from Dr. D. Robertson, Iowa State University. Ac/Ds stocks used were obtained from D. I. Greenblatt, University of Connecticut. The methodology of HMl mutant isolation was performed in the manner previously published by one of us [S.P. Briggs, Curr. Top. Plant Biochem. Phyεiol., 6:59 (1987)]. Inbred HMl allele designations are: Pr, hml-1 ; K61, hml-2; P8 , Hml-A; Prl, Hml-Prl; B79, Hml-B79; 4Co63, Hml-4C063; Pioneer PHV12, Hml-PHV12. Experimental Approach Transposon-tagging is known to be a reliable tool for isolating genes from maize. The basic tenet of tranposon tagging is that DNA rearrangements (i.e., insertions or excisions) that are concomitant with genetic (phenotypic) changes define a causal relationship which identifies the rearranged DNA as the changed gene. Several independent events of this nature are accepted as proof of identity. As described herein, we have observed that 5 mutant alleles of HMl are associated with insertions within a transcribed region (hml-656: :Mul) , hml-1369: :Mu3, Hml-1062; :dHbr, hml- 2355, hml-1040: :Spm) , and 1 deletion allele Def(HMl )-1790 is associated with loss of the transcribed region. Finally, only the wild-type allele (Hml-Prl ) produced a 1.3 kb mRNA. The tranεposable element family Mutator is particularly effective for generating forward mutations. Germinal reversion of mutants back to wild-type is rare with Mutator- induced alleles. Somatic reversion has been observed, but the small somatic sectors typical of Mutator cannot be identified for traits that are not cell autonomous or are complex, such as disease lesion development. Therefore, to obtain multiple genetic events that were coincident with rearrangements of HMl , a strategy based upon independent forward mutations rather than reversions was used. To identify co-segregation between HMl and a restriction fragment, the segregating progeny were first classified by examining their DNA on Southern blots. The blots were hybridized with probes for RFLP loci that flank the locus; PIO200644 and PIO200044 (obtained from D. Grant, Pioneer Hi- Bred International, Inc. ) map 5 cM proximal and distal to HMl , respectively (2; unpublished observations). Only progeny that inherited alleles at both loci from the same parent were used in the analysis. This approach permitted the identification of progeny which inherited the 10 cM block of chromosome 1 bounded by the RFLP loci. By grouping together progeny that inherited either the mutant allele, or the recessive tester allele with which the mutant allele was paired, and then comparing the two classes with each other, restriction fragments that were common to one progeny class and absent from the other were identified. This method established linkage between restriction fragments and the 10 cM block that contains HMl . To directly determine the linkage between HMl and a restriction fragment, linked fragments were cloned and used to prepare DNA hybridization probes. Probes were then hybridized to a Southern blot of DNA from 60 progeny of the backcroεs K61/Prl X K61. The backcross progeny were scored for inheritance of the HMl alleles by inoculating them with conidia of the C_^ carbonum race 1 strain SB111, and for inheritance of the alternate alleles detected by the DNA probes. A comparison of the patterns of inheritance revealed the linkage relationshipε between the probes and HMl. The RFLP loci described above, plus an RFLP locus that is detected by the probe NPI429, were used to identify the progenitor of the mutant alleles. We obtained NPI429 from T. Helentjariε, Native Plants, Inc. Isolation of DNA and blot hybridization Total DNA from the leaf tissue of maize, Sorghum (Pioneer inbred P285), and Coix (Lachrymae jobi ) and seedling tisεue of Arabidopεiε thaliana L. (Landsberg erecta) was isolated by the urea extraction method as described in S. L. Dellaporta, J. Wood, J.B. Hicks, Plant Mol Biol Rep, 1, 18 (1983). Southern blots were prepared as described by Athma et al , Genetics, 128, 163 (1991). For RFLP analysis, DNA was tranεferred to nylon membranes (MSI from Fisher) and the hybridizations were performed as described above but without the addition of formamide. Probes were made from gel-purified DNA fragments and labeled by random priming (Amerεham) . The Mul specific probes was an internal 650 bp Aval/BεtEH fragment isolated from pA/B5; the plasmid was provided by L. Taylor, Stanford University. The Mu3 specific probe was the internal Hindlll/Xbal fragment of a clone that was obtained from V. Chandler, University of Oregon. The Spm probeε were pBxl and pXS2.3 obtained from K. Cone, Brookhaven National Laboratory. Isolation of RNA and Northern Blotting Total RNA from 5 to 6 day-old etiolated seedlings was isolated by the guanidine thiocyanate method (P. Chomczynski and N. Sacchi, Anal Biochem 162, 156 (1987)]. Poly(A)+ RNA was enriched using the polyATtract mRNA isolation system of Promega. Samples (~15 ug) of poly(A)+ RNA were denatured using formaldehyde, fractionated in a 1.3% agarose gel, and blotted onto Hybond-N by standard techniques ( ). DNA probes were radiolabeled by random priming and the blots were hybridized and washed as deεcribed. Genomic Cloning DNA iεolated from homozygouε mutant seedlings was digested with Sεtl or Xhol and the appropriate DNA fragments (as judged from the Southern blots) were purified by preparative gel electrophoreεiε and electroelution into dialysiε tubing. Thiε purified DNA was ligated to preannealed Sεtl or Xhol cut armε from the bacteriophage vector λ sep6-lac5 obtained from R. Martiensεen, Cold Spring Harbor Laboratory. Packaging into Gigapack Gold (Stratagene) and εcreening of the libraries were carried out according to the manufacturers instructions. All clones were subcloned into Blueεcript SK+ (Stratagene) and maintained in the SURE strain (Stratagene) of E^ coli . PCR (Polymeraεe Chain Reaction) and Sequence Analysis For analysis of DNA from the resistant progeny of the hml-656 : :Mul/hml-1369 : :Mu3 heterozygote, primers homologous to sequences on each side of the insertion sites were used for PCR amplication. The primer sequences were: 5' CTG CTC ATG ACT CAT ATC AGG CGG TAG C 3' AND 5' GAC CAG CCG ACG CAG CAG CCC CGC CTT C 3'. PCR conditions were as described by Perkin Elmer-Cetus, except that the reactions were performed in 20% glycerol. Reactions were heated to 94 C for 3 min, then cycled 40 times for 1 min at 94 C, 2 min at 65 C, and 2 min at 72 C; and finally extended for 15 min at 72C. The gel-purified PCR products were reamplified and directly sequenced using synthetic sequencing primers. HMl Mutants Derived from Mutator Stocks Several mutant alleles of HMl were recovered from Mutator element stocks, 4 of which were selected for further study. Criteria for selection included DNA hybridization data that ruled out pollen contamination as the source of the mutant alleles and a low frequency of susceptible progeny appearing within a family. RFLP loci were used to distinguish between the mutant alleles and the standard recessive alleles with which they had been paired. Segregating progeny were classified for inheritance of mutant alleles by use of the RFLP probes. hml-656: :Mul Progeny produced by fertilizing plants of the genotype y_ wx gll Hml-B79 Mutator (designated 81-82-9537 Mu 2 per se by D. Robertson) with pollen from the hybrid, K61/Pr, resulted in the recovery of 2 susceptible plants out of 253 progeny. Both susceptible plantε were found to be carrying the mutant allele, hml-656 : :Mul , indicating that they arose as the result of a small somatic sector on the ear. Pollen from both plantε was used to fertilize ears on the Pioneer inbred, PHV12. When progeny from the cross hml-656 : :Mul/hml-l x Hml- PHV12/Hml-PHV12 were clasεified according to inheritance of the hml-656 : :Mul allele (by uεing the RFLP loci), a pattern of hybridization with probe DNA from the Mul element was observed. A 3.2 kb Sstl fragment co-segregated with the hml-656 : :Mul allele. No exceptions to this were found in a sample of 92 progeny. The 3.2 kb fragment, which contained Mul plus some flanking DNA, was excised from a gel, cloned into the Sstl site of λ. sep6-lac5 , subcloned into Blueεcript SK+, restriction mapped, and used to prepare a probe from the DNA flanking the Mul insertion (designated *656 ) . The *656 probe was hybridized to a Southern blot of DNA from 4 different homozygouε mutants. Classification using RFLP loci indicated that each of the mutant alleles was derived from the B79 inbred parent (Hml-B79 ) . The observation of polymorphisms showed that a DNA rearrangement took place in the cloned region concomitant with the generation of the mutations. With the enzyme used, hml- 1062 : :dHbr produces a fragment identical to B79. However, polymorphisms between hml-1062 : :dHbr and B79 can be detected using other enzymes. hml-1369: :Mu3 The hml-1369 : :Mu3 allele was recovered as a single susceptible plant out of 230 progeny. The progeny were produced by pollinating plants of the genotype y_ wx gll Hml- B-79 Mutator (designated 81-82-9537 Mu 2 per se by Dr. Robertson) with the hybrid, K61/Pr (hml-2/hml- ) . The heterozygote , hml-1369: :Mu3/hml-2, was self- pollinated and the progeny were classified using RFLP loci. Hybridization of a Mu3 probe revealed a co-segregating band. A 4.6 kb Sstl fragment co-εegregated with the hml-1369: :Mu3 allele. The signal intenεity difference caused by 2 doses of the allele, when homozygouε, permitted hml-1369: :Mu3 to be scored as a codominant marker, which increased the mapping resolution. No recombinants were observed in a sample of 60 progeny. The 4.6 kb fragment, which contained Mu3 plus flanking DNA, was excised from the gel and cloned into the Sstl site of _λ sep6-lac5 subcloned into Bluescript SK+, restriction mapped, and used to prepare a probe (deεignated *1369 ) from the DNA that flanked the Mu3 insertion. The *1369 probe detected the same polymorphisms that had been revealed by the *656 probe, indicating that the Mul and Mu3 elements had inserted into the same restriction fragment. This conclusion was confirmed by comparison of the restriction maps of the 2 clones. An anomaly was revealed with Sstl in which the hml-656 : :Mul DNA gave a 3.2 kb fragment when hybridized with the *656 probe but a 1.0 kb fragment when the *1369 probe was used; other enzymes failed to detect this anomaly. DNA sequence analysis showed that the Mul element had created an Sεtl site upon insertion into HMl. An effort was made to recover resistant progeny from the Mu alleles. The heterozygote , hml-656: :Mul/hml-1369: :Mu3 was fertilized using pollen from the inbred Pr (hml-1 ) . From 500 progeny, 1 resistant plant was recovered. Examination of DNA from 10 susceptible siblings of the resistant plant confirmed that all three parental alleles were segregating as expected. Examination of DNA from the resistant plant revealed a progenitor-sized fragment from B79 (designated Hml-B79R) plus the hml-1 allele from Pr. This plant was εelf-pollinated. DNA from its progeny was examined uεing probeε *1369, PIO200644, PIO200044, and NPI429. The εame progeny were tested for susceptibility to infection by inoculating with SBlll. The results confirmed that resiεtance was conferred by the Hml-B79R allele. Homozygouε Hml-B79R progeny were identified. The site of insertion of Mul/Mu3 was amplified by PCR and sequenced with no difference observed between the new allele and the B79 progenitor . hml-1062: rdHbr Progeny produced by pollinating the hybrid, K61/Pr (hml- 2/hml-l ) , with plantε of the genotype y_ wx gll Hml-B79 Mutator (designated 81-82-9539 Mu 2 per se by Dr. Robertson) resulted in the recovery of the hml-1062 : :dHbr allele from 1 of 2 susceptible plantε out of 483 progeny. Hybridization with probeε specific for Mul , Mu_3, Mu7 , and Mu8 failed to identify a fragment that cosegregated with hml-1062 : :dHb . Hyb idization with the *656 probe detected a polymorphism between hml-1062 : :dHbr and the progenitor allele, Hml-B79. We cloned a 3.1 kb Xhol fragment from the hml-1062 : :dHbr mutant into _λ εep6-lac5, using *656 as a probe. Restriction mapping confirmed the B79 structure with the exception of a small (approximately 400 bp) insertion into the Sstl-Xhol fragment at the 3'-end of the clone. The identity of this insertion element has not been determined, but it lacks homology with Ac, Dsl , Ds2 , and Spm/En internal sequence probes and with the Mu terminal inverted repeat. Def(HMl-1790) Progeny produced by pollinating plants of the genotype y_ wx gll Hml-B79 Mutator (designated 81-82-9536 Mu 2 per se by D. Robertson) with the hybrid, K61/Pr (hml-2/hml-l ) , resulted in the recovery of the Def(HMl )-1790 allele from a single susceptible plant out of 345 progeny. The Def(HMl )-1790 allele displays an aberrant transmiεεion pattern. A Def(HMl )-1790/hml-l heterozygote was self-pollinated and the progeny were characterized using the flanking RFLP loci. Only 14 of 56 progeny were found to have inherited the Def(HMl )-1790 chromosome. When a heterozygote was fertilized using pollen from a wild-type stock (SB509), 8 of 25 progeny inherited the Def(HMl )-1790 chromosome. When the heterozygote was used as the pollen source to fertilize a wild-type inbred (W23), none of 32 progeny inherited the Def( HMl )-1790 chromosome. The results show that the Def( HMl )-1790 allele (or chromosome) was not transmitted through the pollen and was only poorly transmitted through the egg. Such a pattern of transmission is typical of a chromosomal deficiency. The *1369 probe did not hybridize with DNA from the Def(HMl )-1790 allele, confirming the presence of a deletion and showing that the cloned region lies within the deletion. Test crosses with br_2, which maps within 0.1 cM of HMl, produced only wild- type progeny. Likewiεe, both PIO200644 and PIO200044 detected 2 alleles in progeny that inherited Def(HMl )-1790. Therefore, the deletion cannot encompass more than 5 cM of the chromosome, being bounded by br2 and one of the RFLP loci . An HMl mutant derived from an Ac/Dε stock An allele, Hml-1040 : :Spm, waε recovered from the inbred 4Co63; the P-VV allele (Ac inserted into the Vl_ gene) had been backcroεsed into this verεion of 4Co63. This allele waε selected for study because it appeared to arise as a large taεεel sector. The hybrid K61/Pr (hml-2/hml-l ) was fertilized using pollen from the P-VV/P-WW) inbred 4Co63 (Hml-4Co63/Hml-4Co63 ) , designated 610417(X) by I. Greenblatt (personal communication). Seventeen males were used to produce 32 ears. Only 2 ears bore susceptible progeny and both were derived from male plant number 16. The cross 741- 11 X 741-9 plant 16 yielded 47 susceptible progeny out of 323. The crosε 741-13 X 741-9 plant 16 yielded 16 susceptible progeny out of 323. The results are best explained by a single mutagenic event that occurred during tassel development, giving rise to many gametes bearing the same mutation. Genetic tests showed that Ac had not transposed in the hml-1040: :dSpm mutant; Ac, Dsl , and Ds2 probes failed to identify a restriction fragment that cosegregated with hml- 1040: :dSpm. Examination of DNA from the hml-1040: ;dSpm mutant by hybridization with the *1369 probe revealed an 11.0 kb Sεtl restriction fragment that was 6 kb larger than the Hml-4Co63 progenitor allele. This fragment was cloned into λ sep6-lac5. Hybridization of various probes to DNA from the clone identified the insertion as an Spm/En homologous element. Natural Variation The Hml parental alleles from which the mutants described in this report were derived provide complete resistance to C_^ carbonum race 1 throughout the development of the plant. In contraεt, the Hml-A allele, found in the inbred P8 , provides partial reεiεtance that increases as the plant develops. Examination of DNA from P8 by hybridization with the *1369 probe showed that the cloned region is duplicated. The duplicate locus segregates independently of HMl . The relationship between the pattern of expression and the duplication has not been established. The *1369 probe hybridized well with DNA from the grasses Sorghum and Coix but poorly with DNA from Arabidopsiε . Poly(A)+ RNA from our mutants and from the inbredε K61 (hml-2) and Prl (Hml-Prl ) waε blotted and hybridized with the *1062 probe. A 1.3 kb mRNA band waε present only in the Prl lanes. The susceptible genotypes either had no detectable hybridizing mRNA or the size waε aberrant. In all cases, the signal was extremely weak. These results eεtabliεh that all or a sufficient part of the HMl gene has been cloned and sequenced, with genomic and cDNA sequences as shown in SEQUENCE I.D. No. 1 and SEQUENCE I.D. No. 2, respectively. Recessive alleles of the gene clearly contain homologous DNA (e.g., hml-1 and hml-2 ) . This stands in contraεt to the 2 fungal plant pathogen genes that have been cloned which control race specificity: : TOX2 confers race 1 type pathogenicity upon C^ carbonum (Walton, personal communication) and ayr9 confers race specific ' avirulence upon Cladosporium fulvum; both genes are missing in strains that lack their corresponding functions. Reεiεtance appearε to differ from susceptible at the transcriptional level, at leaεt among the small samples of alleles that were examined. This indicates that susceptible genotypes do not posseεs an alternative form of HMl with specificity for a εubεtrate other than HC-toxin. This result alεo εuggeεtε that the only function of HMl in young leaf tiεεue is to provide reεiεtance, since the HMl mutations are not pleiotropic. SEQUENCE LISTING (1) GENERAL INFORMATION: (i) APPLICANT: Briggε, Steven P.; Johal , Gurmukh S. (ii) TITLE OF INVENTION: A Disease Resistance Gene from Maize as a Selectable Marker (iii) NUMBER OF SEQUENCES: 2 (iv) CORRESPONDENCE ADDRESS: (A) ADDRESSEE Pioneer Hi-Bred International, Inc. (B) STREET: 700 Capital Square, 400 Locust Street (C) CITY: Deε Moineε (D) STATE: Iowa (E) COUNTRY: United Stateε (F) ZIP: 50309 (v) COMPUTER READABLE FORM: (A) MEDIUM TYPE: Diεkette, 3.5 inch, 1.44 Mb storage (B) COMPUTER: IBM Compatible (C) OPERATING SYSTEM: MS-DOS (D) SOFTWARE: Microsoft Windows Notepad (vi) CURRENT APPLICATION DATA: (A) APPLICATION NUMBER: (B) FILING DATE: (C) CLASSIFICATION: (vii) PRIOR APPLICATION DATA: (A) APPLICATION NUMBER: (B) FILING DATE: (viii) ATTORNEY/AGENT INFORMATION: (A) NAME: Roth, Michael J. (B) REGISTRATION NUMBER: 29,342 (C) REFERENCE/DOCKET NUMBER: 0212 US (ix) TELECOMMUNICATION INFORMATION: (A) TELEPHONE: (515) 245-3594 (B) TELEFAX: (515) 245-3634 (2) INFORMATION FOR SEQ ID NO: 1: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 5198 base pairs (B) TYPE: nucleotide (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: genomic DNA (A) DESCRIPTION: (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: NO (v) FRAGMENT TYPE : (vi) ORIGINAL SOURCE: (A) ORGANISM: Zea mays B) STRAIN: [C) INDIVIDUAL ISOLATE: D) DEVELOPMENTAL STAGE: E) HAPLOTYPE: F) TISSUE TYPE: G) CELL TYPE: H) CELL LINE: I ) ORGANELLE: (vii ) IMMEDIATE SOURCE: A) LIBRARY: B) CLONE: (vii: L) POSITION IN GENOME: A) CHROMOSOME/SEGMENT: B) MAP POSITION: C) UNITS: (ix) FEATURE: A) NAME/KEY: B) LOCATION: C) IDENTIFICATION METHOD: D) OTHER INFORMATION: (x) PUBLICATION INFORMATION: A) AUTHORS: B) TITLE: C) JOURNAL: D) VOLUME: E) ISSUE: F) PAGES: G) DATE: H) DOCUMENT NUMBER: ( I ) FILING DATE: (J) PUBLICATION DATE: (K) RELEVANT RESIDUES IN SEQ ID NO: (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1: GAATTCGTAT ATCAGTTTAC TGCATGTATA TTTTTTGCAT GCACATTGGA 50 AAGACAATTC CTTGATTTAT GTTGTTCGTA ATTACCAAAA AATCAAATCA 100 TTTATGTTCG TAATTGCTAG ATTTTTACGT CTTCCATAAA ACTGTCCCTA 150 ATTCTCGCCT GTTCTTAATT ACCATAAAAA ATCAAATCAA ATCACTTATA 200 GTCTTAACTG CCAAATTTTT ATATCTGCCA TAAAATTGTC CCTAATTTCC 250 GTCGGCGTTC TTAGTTGGAC CGATATTAGG TTTTTTCAAT TATGCTACAC 300 TGTCTAAATA TTTATGCGAC GTTGTATAAG AATTTGTGCT TTGTGTGACT 350 CATGTCATCC AATTTTTTGT GCGCGTGCAG TGGAAAGGAC ATATAATCTA 400 AAATTTGCGT GCATGCAATG GAAACTCCTA CAATTTGCCT TAATTTTTAG 450 ATGTGCATAA AAATAGAAAT TGCATGCATA CGACTCCCAT ATTTTTCAGA 500 TCTGCCATAA AAATAGGATC GTAAATACAA CCCACCAAAC TATCAACCTC 550 TCATATTGGC TCGATATTTA TGTTTATAAC TGAGAGGTTT TATGCCTAAA 600 ACTTAAGGTA TTTACGCTCG AACCTGTAGA TGCATCCACC AGTGAACCAC 650 ATGCCAGATT TTTTACGTAG TATACCACAT TGCATATATA ACTACACCAT 700 GTTGCATAAT TTGTATAAGT ATATATCATA AACTGGTGCT AACGAGCCTA 750 GTTGCATGTC TGTTGAAGCG ATCATATATT TATACACGAA ATAAAGCATT 800 TAAATAATTT TTTTTTGTTT TCATGCATGC CAATCCATTT CCTTTCATCG 850 CACATCCTGC CATCCTAAAT TTGTGTGCAT GCATCAAGAA ACAGATTTTT 900 ACACAGTATA CTGAATTGAA TAAATACCTA CACCTTGTAA CATAATTAAT 950 ATCAGTATAT TATAAACTAG TCCTAACGAA TTTAGTTGTA TGGCTGTTGG 1000 AGCGATCCTA TATTTATGGA GAAAATAAAG TATTAAATAT TTTTTTTTGT 1050 TTCCATGCAT GCCAATCCAT TTCCTTTCAT CGCATATTCT TGTCATCTTA 1100 AATTTGTGCT CATGCAACAG GAAACAAATT TTTACGCAGT GTACCAAATT 1150 GCATAAACAC CTACACCGTG TTGCATAATT AGTATCGTTA TATAACATAA 1200 ACTAGTCTTG ACAAGCCTAT CTAAATGGGT TTTAGAGTGA TCTTATATTT 1250 ATGGAGGAAA TAAAGCATTA AATATGAATA TTTGTTTTCA TACATGACAA 1300 TTCATTTCCT TTTATCGTAC AAATTTTGCC ATCCTAATTT TGTGCACATG 1350 CAGCAGGTAA AAAACTTTTA CGTAGTGTAC CAAATTGCAT AAATATCTAC 1400 ACCGTGTAGC ATATTTAGTA TTAGTATATA TATCATAAAC TGGTCCTAAC 1450 GAGCCTAGCT GCATAGCTGT TGCAGCGATC CTATATTTAT GGAGAAAATG 1500 AATCATTTAA AAATAGAAAA AGTCAGAATC TTTTTTTTAA AACTTTACGC 1550 GTATGCAGGG ACACATGTTT GACTTATGCA TCCATTCTTT TTTTGCGAGC 1600 ATAAACGTGG GGTGGGGAGC GCACCCGACA AACTGGCTTG GGGAGTGAGT 1650 GGGCGCGCCG GCCTGGACCA GGTCGCAGGG GTGGTCGGCC TGGGCTTCCT 1700 CTAACTATTT GAAGCCCAGG GTTCCTAATA TACCTTTCCC TATATATATA 1750 TGGCTTCTTT GGAAGCTTTA CTTAAAAAAC TTTAGCTTTA GCTTTTGAGC 1800 TTCACCATAA AACAACTCCA GCAAATTGTT AAGGTGGGTT TCAGAAGCGT 1850 TTGACTTCCA CATGAACTCC AGCTTCTATA GTACAATTGA TTTGTGTGAG 1900 TTTCCTTGAT TACCCTTTAT GATTAGTGGG TTGTCGCGAG AGAAAACGTA 1950 AGTTATATAT TGCGTAACCA GTGGCATGGT GGGTAATTTT TGTACAACTT 2000 CATGAGGAGA TATAAAAACG GTGTTTTTGT AGCACCCTCT AAGAGTTTCA 2050 TGAATTTCAT GAAATTGACC TCTAGTTTCG ATTTTTTTAA AGCTAGAGCT 2100 CGTGGAGCTG GACCAGTTTA GGTGGAAGAA GTTGGAATGA AGTTGAAATT 2150 TTTGAAGTGA AGCTCTCTCA AATAGAGCGT TAATCTACAT TATTAATATT 2200 TGACTTCTAG ATAAGCGAGA ATGGCACTCT TTAGAATGGA GCAACTGGGC 2250 TTAGCTACAT TTATGATATG GAGGTTCTTA GTTGTATTAT GTAGTTTCTT 2300 AGCTACCTTT TATATTTGGA AAACCGAACC AGACTCTGGA TTGTACATAG 2350 CCTTTGAAGA ATTATTCAAG AGTTAATTAA GCTGTAATGC CACTAATATT 2400 AAGGTTTAAT TTACCCTTGT ATTCAATACT TAACGTTATA TATTCTCTAT 2450 AATTAAACAT AGTCCAACTT AAAAAATGAT TTTTGCAAAG ATAGAATTAT 2500 ATGTTTTTTG TGAGGGCTAA TAGTTTAATG AAGTTATCGA TGTTTGTATA 2550 TTTCACGACT ATAACCTTCA CCTCTGACCG CTAATGCTTG TTTAGACCAT 2600 ATTTGGATGT TGTTGTATTA AAATATTATG TTATTAAGGA ACCATTGTTT 2650 TAGCATTGTA TTCAAAATTA TGAAGTTTTT ATATGCAAAT GATTCACTCG 2700 AAAAAACAAA AGTATCAAAA TCATAGTATT TTCTCTCTCT AAAATTCCAA 2750 AAATATTTTA CATCTAAAGT TGATGTCTTG GCCTCCCGCG CTGTTTTACC 2800 TTCCTCCTCT GGACACCAAC CACAGGCCGA CAACCGAGTA AGCCGGTCAA 2850 TTTTGGTATC CTGCTCATGA CTCATATCAG GCGGTAGCCG AGCAGCCGCC 2900 CAGCTTTCTC ATGCCAGAGC AAACCCATAG GTCCAGTCCA AATCCAATCC 2950 CTGTTGCCAT CAGAATTTCA GGGGCAGCCA TGGCCGAAAA GGAGAGCAAC 3000 GGAGTGCGGG TGTGCGTCAC CGGAGGAGCC GGGTTCATCG GCTCCTGGCT 3050 CGTCAGGAAG CTCCTCGAGA AAGGCTACAC CGTCCACGCC ACCCTGCGGA 3100 ACACCGGTGC GTCTGATGGC GGCTCCTCAG CTCGATCCGC GCGTCGCGAA 3150 AGGCGAAACA CGCCAAAGGC GAAAGGAGTG GGTCGGGTCT CGTGTGTGGC 3200 TGCCTGATGA TTCGGGAATC TTAGCCGGAT TCGTGTGCTG GTGGGTGTGC 3250 AGGGGACGAG GCGAAGGCGG GGCTGCTGCG TCGGCTGGTC CCCGGCGCGG 3300 CGGAGCGGCT GCGGTTGTTC CAGGCCGACC TCTTCGACGC CGCCACCTTC 3350 GCGCCGGCGA TCGCTGGGTG CCAGTTCGTC TTCCTCGTCG CCACGCCATT 3400 CGGGCTCGAT AGCGCCGGCT CCCAGGTGAA GCTTGCCGTC GCGTTCGCTC 3450 CCTTCACTGT TTTACTAGTC AACGAGTGGT CAGGCGGCGA CGCGCCGTGC 3500 TGTCTCTTCT TAATTTTAAG TTGTGGAAAA TTACTGTCCT TGCAAAGGAA 3550 AAATTTGATC AGACTGAGTA TGAGTAAAGA CCAGTAAGAC AGCACAAGGA 3600 TTGCGAGCTG CGACTGCGAG CAGAGGAAAC GTCTTCACAG TTATTCTTGT 3650 CTGCCTTGTT TTTCTCTATC TGAAGCAAAA TCTTGTGGTG CCCATCGACC 3700 GCGTATAGCA GTATAAGAGC ACGGCGGAAG CTGTGGTGGA CGCGGTGCGC 3750 GCGATCCTCC GGCAATGCGA GGAGTCCCGG ACGGTGAAGC GAGTGATCCA 3800 CACAGCCTCC GTAGCGGCCG CCTCGCCGTT GCTGGAGGAG GAGGTCTCCG 3850 CCTCCGGCGT CGGGTACAGA GACTTCATCG ACGAATCTTG TTGGACTTCG 3900 CTCAACGTTG ACTATCCTCT CCGAAGCGCA CACTTCGACG TAAGTAGTAT 3950 ACAAGCGAAG CTTCTTCTGA TTTCTGAACT GGAACGCCTG ATCACATTAA 4000 TATTTTTTAG CTGACGGCCA TTTGATTTGC AGAAGTACAT ACTGTCGAAG 4050 CTGCGGTCAG AGCAGGAGCT CCTGAGCTAC AACGGCGGCG AGAGCCCGGC 4100 GTTCGAGGTG GTGACCCTGC CGCTGGGGCT CGTGGCGGGC GACACGGTCC 4150 TCGGCCGCGC CCCGGAGACG GTGGAGAGCG CCGTGGCGCC CGTGTCCCGC 4200 AGCGAGCCCT GCTTCGGCCT CCTGCGCATA CTGCAGCAGC TCCTGGGGTC 4250 GCTGCCGCTG GTGCACGTGG ACGACGTCTG CGACGCGCTC GTCTTCTGCA 4300 TGGAGCGGCG CCCCTCCGTC GCCGGCCGCT TCCTCTGCGC CGCCGCGTAC 4350 CCGACGATCC ACGACGTGGT CGCCCACTAC GCCAGCAAGT TCCCTCACCT 4400 CGACATCTTG AAAGAGTAAG ATCAAAAGCG TCCACAGCGA CAGCATCACC 4450 CTGCACACAA GAACTGACTG CCGATTTACG TTTCTGTTGC GATTGGTTGG 4500 ATTGATCTGC GTCAGGACGG AGGCGGTGGC GACGGTGCGG CCTGCCCGGG 4550 ACAGGTTGGG CGAGCTGGGC TTCAAGTACA AGTACGGCAT GGAAGAGATT 4600 CTGGATAGCA GCGTTGCCTG TGCGGCGAGA TTAGGTTCCC TTGACGCATC 4650 CAAGCTCGGC CTACAGAAAG GATAAAAGCT CGAAGCTTAC TCATAAGCAC 4700 CATGGGGAAC TTGGATTGTT CGCTGTCCAC TATACGCGTT CGAAATTTGG 4750 AAACTAGACA TACTCCAATA AAACAAGAGG TAAAGAAACG TGGGCTAACT 4800 GATACGCGTT GAGCAGTTGA GCTAGCCTAG TTTAGTCCAC CTGTGTGCAG 4850 GGTTTAAAAC TTCGACGAAA TTTTATGACT TGCGATAATT TTAGGCCTCT 4900 AAATATCAAC CATACACTCT AAATTGTATA TGTGCATACA CATATAGCCA 4950 TATGGACGCT CTGATCTAGC ATCCTACACC TATGCACCTC TCTAAGAACA 5000 ACTCCAACAG CCTCACTAAA TATATCAGAT TCGGTAAAAA AAAACCCAGT 5050 TAAAATTGTA TCCAATAGTC TCGTTTTATT CTTATCTTCT CTATCCAACT 5100 CGTCATATGG TCCCTTTCGC TAGACATCTT TGCCAAGGCG TACGGCTCGC 5150 CATATCCCTC GTCATGCCCA ACTGTCCTCC CGCCGTCGCA GAGAATTC 5198 (2) INFORMATION FOR SEQ ID NO: 2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 1374 baεe pairε (B) TYPE: nucleotide (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (A) DESCRIPTION: (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: NO (v) FRAGMENT TYPE : (vi) ORIGINAL SOURCE: [A) ORGANISM: Zea mayε B) STRAIN: (C) INDIVIDUAL ISOLATE: D) DEVELOPMENTAL STAGE: E) HAPLOTYPE: F) TISSUE TYPE: G) CELL TYPE (H) CELL LINE I) ORGANELLE (vii) IMMEDIATE SOURCE: ;A) LIBRARY: B) CLONE: (viii) POSITION IN GENOME: A) CHROMOSOME/SEGMENT: B) MAP POSITION: C) UNITS: (ix) FEATURE: (A) NAME/KEY: B) LOCATION: C) IDENTIFICATION METHOD: D) OTHER INFORMATION: (x) PUBLICATION INFORMATION: (A) AUTHORS: B) TITLE: C) JOURNAL: D) VOLUME: (E) ISSUE: (F) PAGES: (G) DATE: (H) DOCUMENT NUMBER: (I ) FILING DATE: (J) PUBLICATION DATE: (K) RELEVANT RESIDUES IN SEQ ID NO: (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2: GAATTCGGCA CGAGTGCCAT CAGAATTTCA GGGGCAGCCA TGGCCGAAAA 50 GGAGAGCAAC GGAGTGCGGG TGTGCGTCAC CGGAGGAGCC GGGTTCATCG 100 GCTCCTGGCT CGTCAGGAAG CTCCTCGAGA AAGGCTACAC CGTCCACGCC 150 ACCCTGCGGA ACACCGGGGA CGAGGCGAAG GCGGGGCTGC TGCGTCGGCT 200 GGTCCCCGGC GCGGCGGAGC GGCTGCGGTT GTTCCAGGCC GACCTCTTCG 250 ACGCCGCCAC CTTCGCGCCG GCGATCGCTG GGTGCCAGTT CGTCTTCCTC 300 GTCGCCACGC CATTCGGGCT CGATAGCGCC GGCTCCCAGT ATAAGAGCAC 350 GGCGGAAGCT GTGGTGGACG CGGTGCGCGC GATCCTCCGG CAATGCGAGG 400 AGTCCCGGAC GGTGAAGCGA GTGATCCACA CAGCCTCCGT AGCGGCCGCC 450 TCGCCGTTGC TGGAGGAGGA GGTCTCCGCC TCCGGCGTCG GGTACAGAGA 500 CTTCATCGAC GAATCTTGTT GGACTTCGCT CAACGTTGAC TATCCTCTCC 550 GAAGCGCACA CTTCGACAAG TACATACTGT CGAAGCTGCG GTCAGAGCAG 600 GAGCTCCTGA GCTACAACGG CGGCGAGAGC CCGGCGTTCG AGGTGGTGAC 650 CCTGCCGCTG GGGCTCGTGG CGGGCGACAC GGTCCTCGGC CGCGCCCCGG 700 AGACGGTGGA GAGCGCCGTG GCGCCCGTGT CCCGCAGCGA GCCCTGCTTC 750 GGCCTCCTGC GCATACTGCA GCAGCTCCTG GGGTCGCTGC CGCTGGTGCA 800 CGTGGACGAC GTCTGCGACG CGCTCGTCTT CTGCATGGAG CGGCGCCCCT 850 CCGTCGCCGG CCGCTTCCTC TGCGCCGCCG CGTACCCGAC GATCCACGAC 900 GTGGTCGCCC ACTACGCCAG CAAGTTCCCT CACCTCGACA TCTTGAAAGA 950 GACGGAGGCG GTGGCGACGG TGCGGCCTGC CCGGGACAGG TTGGGCGAGC 1000 TGGGCTTCCA AGTACCAAGT ACGGCATGGG AAGAGATTCT GGATAGCAGC 1050 GTTGCCTGTG CGGCGAGATT AGGTTCCCTT GACGCATCCA AGCTCGGCCT 1100 ACAGAAAGGA TAAAAGCTCG AAGCTTACTC ATAAGCACCA TGGGGAACTT 1150 GGATTGTTCG CTGTCCACTA AACGCGTTCG AAATTTGGAA ACTAGACATA 1200 CTCCAATAAA ACAAGAGGTA AAGAAACGTG GGCTAACTGA TACGCGTTGA 1250 GCAGTTGAGC TAGCCTAGTT TAGTCCACCT GTGTGCAGGG TTTAAAACTT 1300 CGACGAAATT TTATGACTTG CGATAATTTT AGGCCTCTAA AAAAAAAAAA 1350 AAAAAAAAAA AAAAAAAACT CGAG 1374

Claims: WHAT IS CLAIMED IS: 1. A DNA sequence coding εubεtantially solely for the Hml gene of maize. 2. A DNA εequence having at least 90% translational homology to the sequence of SEQUENCE I.D. No. 1 or SEQUENCE I.D. No. 2. 3. An expresεion caεεette containing the DNA sequence of claim 1 or 2 operably linked to plant regulatory sequences which cauεe the expreεεion of the DNA sequence in plant cells. 4. A bacterial transformation vector comprising an expression cassette according to Claim 3, operably linked to bacterial expreεεion regulatory sequences which cause replication of the expression cassette in bacterial cells. 5. Bacterial cells containing as a foreign plaεmid at least one copy of a bacterial transformation vector according to Claim 4. 6. Transformed plant cells containing at least one copy of the expresεion cassette of Claim 3. 7. A transformed plant comprising transformed cells according to claim 6. 8. A method of identifying plant transformation using C. carbonum or the toxin produced by C. Carbonum as a phytotoxic marker, comprising the steps of: a) culturing cells or tissueε from a selected target plant, b) introducing into the cell or tissue culture at least one copy of an expresεion cassette according to Claim 3, c) introducing C. carbonum or the toxin it produces into the cell or tiεεue culture and d) identifying tranεformed cellε as the surviving cells in the cell or tiεεue culture.

Inventors: BRIGGS STEVEN P, JOHAL GURMUKH S, BRIGGS, STEVEN, P., JOHAL, GURMUKH, S.
Applicants: PIONEER HI BRED INT, PIONEER HI-BRED INTERNATIONAL, INC.
Application year: 1993
Main classification: C12N15
IPC codes: C07K14, C12N1, C12N9, C12N15