Process for production of amide compounds and microorganism for use therein

Abstract: There is disclosed a process for production of amide compounds which includes converting a nitrile compound into an amide compound using a cultured broth of bacterial cells, or bacterial cells or materials obtainable by treating bacterial cells, the bacterial cells being cells of a microorganism of the genus Agrobacterium , having activity to convert nitrile compounds into amide compounds. Also disclosed are microorganisms of the genus Agrobacterium , having activity to convert nitrile compounds into amide compounds, which are useful for the process of the present invention.

Description: The present invention relates to a process for production of amide compounds and a microorganism for use in this process. In recent years, biological catalysts such as microorganisms have been largely utilized for chemical reactions. For example, it is well known that nitrile compounds can be converted into amide compounds using a specific microorganism. Examples of the process for such conversion are those which utilize a microoragnism of the genus such as Bacillus , Bacteridium , Micrococcus or Brevibacterium (US-A-4,001,081); Corynebacterium or Nocardia (US-A-4,248,968); Pseudomonas (US-A-4,555,487); Rhodococcus or Microbacterium (EP-A-188316); and Fusarium (JP-A-86889/1989). EP-A-530 522, a document within the meaning of Art 54(3)EPC discloses a method for preparing amides from nitriles , which method utilizes a microorganism belonging to i.a. the genus Agrobacterium . Specifically mentioned are strains of Agrobacterium rhizogenes and tumefaciens . As described above, there are known some kinds of microorganisms having activity to convert nitrile.compounds into amide compounds; it is, however, required to develop an improved process for production of amide compounds using a microorganism with improved efficiency. It is therefore the object of the present invention to provide a microorganism having higher activity to convert nitrile compounds into amide compounds. A microorganism of the genus Agrobacterium , isolated from the soil at a certain place of Kyoto prefecture, has higher activity to hydrate the nitrile groups of nitrile compounds and can convert the nitrile compounds into amide compounds with high efficiency. Thus, the present invention provides a process for production of an amide compound in accordance with claim 1 using the microorganism Agrobacterium radiobacter SC-C+15-1 (FERM BP-3843). The present invention also provides the said microorganism Agrobacterium radiobacter SC-C15-1 (FERM BP-3843). According to the process of the present invention, acetonitrile, acrylonitrile, methacrylonitrile, benzonitrile or malononitrile can be converted into amide compounds. Agrobacterium radiobacter SC-C15-1 has been found by the present inventors to have higher activity to hydrate the nitrile groups of nitrile compounds and deposited with the Fermentation Research Institute (renamed "National Institute of Bioscience and Human Technology") in the Agency of Industrial Science and Technology, under the accession number of FERM BP-3843 on April 23, 1992, under the Budapest Treaty. The following will describe the bacteriological characteristics of Agrobacterium radiobacter SC-C15-1. (a) Morphology: 1. Shape and size of cells Shape: rods Size: 0.5-0.8 × 0.8-2 µm 2. Polymorphism: none 3. Motility: active, peritrichous flagella 4. Sporulation: none 5. Gram staining: negative 6. Acid fastness: none (b) Growth properties 1. Broth agar plate culture: round, convex, no glossy, pale brown 2. Broth agar slant culture: no glossy, pale brown 3. Broth liquid culture: uniform turbid growth 4. Broth gelatin stab culture: not liquefied 5. Litmus milk: slightly coagulated (c) Physiological properties: 1. Nitrate reduction: + 2. Denitrification: ± ∼ + 3. MR test: - 4. VP test: + 5. Indole formation: - 6. Hydrogen sulfide formation: + 7. Starch hydrolysis: - 8. Citrate utilization Koser medium: + Christensen medium: + 9. Inorganic nitrogen source utilization NaNO 3 : + (NH 4 ) 2 SO 4 : + 10. Pigment formation King A medium: - King B medium: - 11. Urease: + 12. Oxydase: + 13. Catalase: + 14. Growth conditions pH: 6.2-9.6 Temp.: 4-39°C 15. Attitude to oxygen: aerobic 16. O-F test: O 17. Acid and gas formation from sugar Acid Gas L-Arabinose + - D-Xylose + - D-Glucose + - D-Mannose + - D-Fructose + - D-Galactose + - Maltose + - Sucrose + - Lactose + - Trehalose + - D-Sorbitol + - D-Mannitol + - Inositol ± - Glycerol + - Starch - - (d) Other properties: 1. Poly(β-hydroxybutyric acid) accumulation: - 2. Algininedihydrase: + 3. GC content: 58.7% These characteristics were compared with the data disclosed in "Bergey's Manual of Systematic Bacteriology" (1984), and the microorganism found by the present inventors was identified as Agrobacterium radiobacter . It should be noted that there have not yet been known any microorganism of the genus Agrobacterium radiobacter , having activity to convert nitrile compounds into amide compounds. In this respect, the microorganism of the present invention, Agrobacterium radiobacter SC-C15-1, is considered to be a novel strain. In addition, any variant of this strain, i.e., any mutant derived from Agrobacterium radiobacter SC-C15-1, any cell fusion strain or any recombinant strain is also available for the process of the present invention. A culture of the microorganism for use in the process of the present invention can be prepared on various kinds of media containing carbon and nitrogen sources, organic and/or inorganic salts, and the like, all of which have been widely used for preparing a culture of ordinary bacteria. Examples of the carbon source are glucose, glycerol, dextrin, sucrose, animal and vegetable oils, molasses, etc. Examples of the nitrogen source are organic and inorganic nitrogen sources such as broth, peptone, yeast extract, malt extract, soy bean powder, corn steep liquor, cotton seed powder, dry yeast, casamino acid, ammonium chloride, sodium nitrate, ammonium nitrate, ammonium sulfate, ammonium acetate and urea, etc. Examples of the organic and inorganic salts are chlorides, sulfates, acetates, carbonates and phosphates of elements such as potassium, sodium, calcium, magnesium, iron, manganese, cobalt, copper and zinc, etc. Specific examples thereof are potassium chloride, sodium chloride, magnesium sulfate, ferrous sulfate, manganese sulfate, cobalt chloride, zinc sulfate, copper sulfate, sodium acetate, calcium carbonate, sodium carbonate, potassium monohydrogenphosphate, potassium dihydrogenphosphate, sodium monohydrogenphosphate and sodium dihydrogenphosphate. In the process of the present invention, it is preferred that a nitrile compound such as isovaleronitrile and crotononitrile, or an amide compound such as crotonamide, is added to the culture medium for the purpose of enhancing the activity to hydrate nitrile groups, of the microorganism used therein. For example, these compounds may be used at an amount of from about 10 mg to about 1 g per 100 mL of the culture medium. A culture of the microorganism for use in the process of the present invention is prepared according to conventional procedures employed for ordinary bacteria, in the form of either a solid culture or a liquid culture such as a shaking culture using test tubes, reciprocating shakers or rotary shakers, and other cultures using jar fermenters or fermentation tanks, etc. A culture of the microorganism is usually incubated under aerobic conditions. In particular, when a jar fermenter or a fermentation tank is used, it is necessary to introduce aseptic air thereinto, usually at a rate of from about 0.1 to about 2 times the culture volume per minute. The incubation temperature may vary within a range in which the microorganism used is viable in culture. For example, the culture is incubated-at a temperature of from about 20° to about 40°C, preferably from about 25° to about 35°C. Preferably, the medium pH is controlled at from about 6 to about 8. The incubation period may vary depending upon various conditions, and it is usually preferred that the culture is incubated over a period of from about 1 to about 7 days. The process of the present invention is conducted, for example, as follows. The cultured broth of the bacterial cells, the bacterial cells, or the materials obtainable by treating the bacterial cells of the microorganism prepared in the manner as described above are suspended in water or an aqueous solution such as a phosphate buffer, and this suspension is reacted with a nitrile compound. As used herein, "materials obtainable by treating bacterial cells" refer to disrupted bacterial cells or enzymes contained therein, obtained by a conventional technique such as ultrasonic disintegration, homogenization or disruption with a French press, or referred to immobilized preparations obtainable by immobilizing untreated or disrupted bacterial cells, or enzymes contained therein, in a readily removable state after their insolubilization, according to an immobilization method such as a carrier-supporting method in which these materials are supported on an appropriate carrier through covalent linkage, ionic bonding, adsorption or the like, or an inclusion method in which these materials are included in the network structure of a polymer. The bacterial cells or..the materials obtainable by treating the bacterial cells are usually used at a concentration of from about 0.01 to about 20 wt%, preferably from about 0.01 to about 10 wt%. In the case of enzymes or immobilized preparations, the concentration thereof may vary depending upon their purity or immobilization method used; for example, it is preferred that the enzymes and immobilized preparation are prepared so as to have activity to hydrate nitrile groups similar to that of the bacterial cells or the materials obtainable by treating the bacterial cells. The cultured broth of the bacterial cells may be used without any further treatment before addition of a nitrile compound. It is preferred that the cultured broth of the bacterial cells is diluted or concentrated so as to have activity to hydrate nitrile groups similar to that of the bacterial cells or the material obtainable by treating the bacterial cells. The reaction is usually carried out at a temperature of from about 0° to about 50°C, preferably from about 0° to about 30°C, at a pH of from about 6 to about 10, preferably from about 7 to about 9, for a period of from about 10 minutes to about 48 hours. When the pH is controlled within the above range, the bacterial cells can accumulate the resulting amide compound in the reaction mixture at high concentrations. The resulting amide compound can be recovered from the reaction mixture by any conventional method known in the art. For example, the bacterial cells or the materials obtainable by treating the bacterial cells are separated from the reaction mixture by centrifugation, etc., followed by treatment with activated charcoal or an ion exchange resin to remove impurities. The purified mixture is concentrated by distillation or evaporation under reduced pressure, and the precipitated crystals are recrystallized from an organic solvent such as methanol, etc., to give the desired amide compound. The present invention will be further illustrated by way of the following examples which are not to be construed to limit the scope thereof. Example 1 (Isolation of bacterial cells) At a certain place of Kyoto prefecture, soil was collected, and added to a culture medium (pH 7.0) containing potassium phosphate (0.3 wt%), dipotassium phosphate (0.7 wt%), glucose (0.2 wt%), sodium citrate (0.05 wt%), magnesium sulfate (0.01 wt%), ferrous sulfate (0.005 wt%), manganese sulfate (0.005 wt%), cobalt chloride (0.005 wt%), zinc sulfate (0.005 wt%), vitamines (very small amounts) and various nitrile compounds (0.05-0.5 wt%), followed by shaking culture using a reciprocating shaker at 30°C for 21 days. A part of this cultured broth was spread on an agar medium containing the same ingredients as described above. The culture was incubated to form some colonies, from which a certain strain was screened for the presence of activity to hydrate nitrile groups. Thus, Agrobacterium radiobacter SC-C15-1 was obtained as a bacterial strain having higher activity to hydrate nitrile groups. Example 2 (Cultured broth of bacterial cells) In a 500-mL Sakaguchi flask, was placed a sterilized culture medium (100 mL, pH 7.2) containing glycerol (1.0 wt%), polypeptone (0.5 wt%), yeast extract (0.3 wt%), malt extract (0.3 wt%), isovaleronitrile (0.1 wt%), ferrous sulfate (0.001 wt%), manganese sulfate (0.001 wt%), cobalt chloride (0.001 wt%) and zinc sulfate (0.001 wt%). This flask was inoculated with a cultured broth (1 mL) of Agrobacterium radiobacter SC-C15-1 which had been incubated on the same culture medium as described above. This flask was incubated at 30°C with reciprocal shaking at a rate of 135 stroke/min. for 2° days, resulting in a cultured broth of bacterial cells. Example 3 (Reaction No. 1) To the cultured broth of bacterial cells (50 mL) obtained in Example 2, acrylonitrile (1.11 g, 21.0 mmol) was added, and the reaction was allowed to proceed at 20°C while stirring with a magnetic stirrer. Three hours after the initiation of the reaction, an aliquot (1.0 mL) of the reaction mixture was taken, and the reaction was stopped by addition of 2 N HCl (0.1 mL) to this aliquot. The reaction mixture was analyzed by gas chromatography under the conditions described below. As the result of this analysis, all the portions of acrylonitrile added were entirely converted into acrylamide, and there was found no by-product such as acrylic acid. Conditions for gas chromatography Column: packed column Carrier: Porapak type Q (mesh 80-100) Length: 1.1 m Column temperature: 210°C Flow rate of carrier gas: 50 mL/min Injection volume of sample: 2 µL Example 4 (Reaction No. 2) From the cultured broth (100 mL) of bacterial cells of Agrobacterium radiobacter SC-C15-1 obtained in Example 2, bacterial cells were collected by centrifugation (10,000 × g , 10 min.). The collected bacterial cells were washed with 0.05 M phosphate buffer (pH 7.7), and suspended in the same buffer (50 mL) as that used for washing. To this suspension, acrylonitrile (6.62 g, 125 mmol) was added in three portions in such a manner that its concentration did not exceed 5 wt%. The reaction was allowed to proceed at 20°C while stirring with a magnetic stirrer. Twenty three hours after the initiation of the reaction, an aliquot (1.0 mL) of the reaction mixture was taken, and the reaction was stopped by addition of 2 N HCl (0.1 mL) to this aliquot. The reaction mixture was analyzed by gas chromatography under the same conditions as described in Example 3. As the result of the analysis, all the portions of acrylonitrile added were entirely converted into acrylamide, and there was found no by-product such as acrylic acid. Example 5 (Recovery) From the reaction mixture obtained in Example 4, bacterial cells were removed by centrifugation (10,000 × g , 10 min.). The supernatant was concentrated by distillation at a temperature below 50°C, and the precipitated crystals were recrystallized from methanol to give the desired amide compound (8.2 g, 115 mmol; yield, 92%) as colorless plate crystals. These crystals were confirmed as acrylamide by measurement of its melting point, elemental analysis, IR spectroscopy and NMR spectroscopy. Example 6 (Preparation of crude enzyme solution) From the cultured broth (8 L) of bacterial cells of Agrobacterium radiobacter SC-C15-1 obtained in Example 2, bacterial cells were collected by centrifugation (10,000 × g , 10 min.). After washing, these bacterial cells were suspended in 0.05 M HEPES-KOH buffer (300 mL, pH 7.2), and disrupted two times with a French press (20,000 psi). The disrupted cells were centrifuged (10,000 × g , 30 min.) to remove the residual bacterial cells. Using a dialysis tubing (Wako Pure Chemical Industries, Ltd.), the supernatant was dialyzed against four changes of 10 mM HEPES-KOH buffer (pH 7.2) at 4°C for 24 hours. The dialysate was allowed to pass through a column (50 mm × 200 mm) of DEAE-Sepharose FE (Pharmacia) as an anion exchange resin, previously equilibrated with 0.05 M HEPES-KOH buffer (pH 7.2), thereby effecting adsorption of enzymes thereon. Then, 0.05 M HEPES-KOH buffer (pH 7.2) was allowed to pass through the column for washing, and elution was effected by a gradient of 0.05 M HEPES-KOH buffer (pH 7.2) containing 0 M to 1.0 M potassium chloride. The fraction exhibiting the activity to hydrate nitrile groups was recovered and dialyzed, using a dialysis tubing (Wako Pure Chemical Industries, Ltd.), against four changes of 10 mM HEPES-KOH buffer (pH 7.2) at 4°C for 24 hours. The dialysate was purified by anion exchange chromatography under the same conditions as described above, except that elution was effected by a gradient of 0.05 mM HEPES-KOH buffer (pH 7.2) containing 0.2 M to 0.8 M potassium chloride. The eluent gas dialyzed in the same manner as described above, resulting in a crude enzyme solution. The activity to hydrate nitrile groups was determined as follows. A sample of the crude enzyme solution (1 mL) was added to 100 mM aqueous propionitrile (9 mL, pH 7.7), and the reaction was allowed to proceed at 10°C. After ten minutes, the reaction was stopped by addition of 2 N HCl (1 mL). An aliquot of the reaction mixture was analyzed by gas chromatography to determine the amount of propionamide produced. As used hereinbelow, with respect to the unit of enzyme activity, the activity to convert 1 µmol of propionitrile into propionamide per minute was defined as 1 unit (U). Example 7 (Reaction No. 3) In this example, nitrile-hydrating enzymes contained in Agrobacterium radiobacter SC-C15-1 were examined for the ability to convert various nitrile compounds into the corresponding amide compounds. To the crude enzyme solution (50 U) obtained in Example 6, added were 0.05 M phosphate buffer (10 mL, pH 7.7) and each (1 mmol) of the tested nitrile compounds shown in Table 1 as a substrate, and the reaction bias allowed to proceed at 30°C for 1 hour. As the result, it was found that the nitrile-hydrating enzymes contained in Agrobacterium radiobacter SC-C15-1 had the ability to convert all the tested nitrile compounds into the corresponding amide compounds and the conversion rate was 100% in all cases. The reaction solution was analyzed by gas chromatography or liquid chromatography to determine the amount of amide compound produced or the amount of nitrile compound consumed. Tested nitrile compound Conversion rate (%) Acrylonitrile 100 Malononitrile 100 Example 8 (Reaction No. 4) In this example, nitrile-hydrating enzymes contained in Agrobacterium radiobacter SC-C15-1 were examined for the ability to convert the tested nitrile compounds (shown in Table 2) other than those tested in Example 7, into the corresponding amide compounds. To the crude enzyme solution (60 U) obtained in Example 6, added were 0.05 M phosphate buffer (20 mL, pH 7.7) and each (1 mmol) of the tested nitrile compounds shown in Table 2 as a substrate, and the reaction was allowed to proceed at 30°C for 3 hours. As the result, it was found that the nitrile-hydrating enzymes contained in Agrobacterium radiobacter SC-C15-1 had the ability to convert all the tested nitrile compounds into the corresponding amide compounds and the conversion rate was 100% in all cases. The reaction solution was analyzed by gas chromatography or liquid chromatography to determine the amount of amide compound produced or the amount of nitrile compound consumed. Tested nitrile compound Conversion rate (%) Acetonitrile 100 Methacrylonitrile 100 Benzonitrile 100 As described above, the present invention makes it possible to produce amide compounds with high purity by hydrating the nitrile groups of nitrile compounds at ordinary temperatures under normal pressures and then converting into the corresponding amide compounds, with the use of the microorganism Agrobacterium - radiobacter SC-C15-1 (FERM BP-3843).

Claims: A process for production of an amide compound, which comprises converting a nitrite compound selected from acetonitrile, acrylonitrile, methacrylonitrile, benzonitrile or malononitrile using a cultuled broth of bacterial cells, bacterial cells or materials obtainable by treating bacterial cells, said bacterial cells being cells of the microorganism Agrobacterium radiobacter SC-C15-1 (FERM BP-3843) having activity to convert the nitrite compound into the corresponding amide compound. A microorganism, which is Agrobacterium radiobacter SC-C15-1 (FERM BP-3843).

Inventors: KUMAGAI KAZUO, MITSUDA SATOSHI, TAKASHIMA YOSHIKI, KUMAGAI, KAZUO, MITSUDA, SATOSHI, TAKASHIMA, YOSHIKI
Applicants: SUMITOMO CHEMICAL CO, SUMITOMO CHEMICAL COMPANY LIMITED
Application year: 1993
Main classification: C12P13
IPC codes: C12P13, C12P17