Process for separating 2-deoxy-2, 2-difluoro-D-ribofuranosyl alkylsulfonate anomers

Abstract: A process for separating an anomeric mixture of alpha and beta 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-alkylsulfonates by contacting the anomeric mixture with a solvent; heating; adding a countersolvent; and lowering the temperature.

Description: The invention pertains to a process for separating and crystallyzing anomers of of 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-alkylsulfonate from anomeric mixtures for use as intermediates in the preparation of anti-neoplastic and/or anti-viral agents. M. Hofer, Chem. Ber. , 93, 277 (1960) and Bhahacharya, J. Org. Chem., 28, 428 (1963) describe a process for preparing 1-chloro-2-deoxy-3, 5-O-(di-p-toluoyl)-D-erythro-pentofuranose. Since the a-anomer of 1-chloro-2-deoxy-3,5-O-(di-p-toluoyl)-D-erythro-pentofuranose is crystalline, it could be separated from the b-anomer by filtration and obtained as a pure crystal. Thus, the crystalline chloride has become the predominant substrate for the synthesis of b-nucleosides from 2-deoxyribofuranosyl derivatives. The 2-deoxyribofuranosyl alkylsulfonate derivatives are unstable. Therefore, there is little mention of them in the chemical literature. However, 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-alkylsulfonate derivatives are stable due to the presence of a gem-difluoro moiety at the 2-position and are used in the preparation of pyrimidine and purine nucleosides. However, the 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-methanesulfonates exists as anomeric mixtures and no attempt has been made to separate the pure anomers. As a result nucleosides prepared from, for example, 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-methanesulfonates, are non-stereoselective. To stereoselectively prepare biologically active 2'-deoxy-2',2'-difluororibofuranosyl nucleosides requires a high purity alpha-anomer 2-deoxy-2,2-difluoro-D-ribofuranosyl alkylsulfonate intermediate. However, these lkyl sulfonate derivatives are usually produced as an anomeric mixture. Therefore, there is a need for a process for separating 2-deoxy-2,2-difluoro-D-ribofuranosyl alkylsulfonate anomers. An objective of the present invention is to provide a process for separating anomeric mixtures of 2-deoxy-2,2-difluoro-D-ribofuranosyl alkylsulfonates. Another objective of the present invention is to provide a process for separating anomeric mixtures of 2-deoxy-2,2-difluoro-D-ribofuranosyl alkylsulfonates that produce the alpha-anomer in crystalline form. According to the present invention there is provided a process for separating anomeric mixtures of the formula wherein each X is independently selected from hydroxy protecting groups and R is an alkyl or substituted alkyl; comprising contacting the anomeric mixture with a solvent; heating; adding a countersolvent; and lowering the temperature. Throughout this document, all temperatures are in degrees Celsius, all proportions, percentages and the like, are in weight units and all mixtures are in volume units, except where otherwise indicated. Anomeric mixtures are expressed as a percent. The term "xylenes" alone or in combination refers to all isomers of xylene and mixtures thereof. The term "sulfonate" alone or in combination refers to compounds of the general formula RSO 3 ; wherein R is alkyl or substituted alkyl. The term "alkyl" alone or in combination refers to straight and branched chain aliphatic hydrocarbon groups which preferably contain up to 7 carbon atoms, such as methyl, ethyl, n-propyl, isopropyl, n-butyl, t-butyl, n-pentyl, n-hexyl, 3-methylpentyl groups and the like, or substituted straight and branched chain aliphatic hydrocarbons such as chloroethane, 1,2-dichloroethane, and the like. The term "substituted" alone or in combination refers to the replacement of hydrogen or a common moiety by one or more of the groups selected from cyano, halo, carboalkoxy, toluoyl, nitro, alkoxy, alkyl, and dialkylamino. The anomeric mixture of 3,5-hydroxy protected 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-alkylsulfonate starting material suitable for use in the present separation process are described in U.S. Patent 4,526,988 and U.S. Patent 4,965,374. In a preferred embodiment of the present process an anomeric mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate, 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-ethanesulfonate or alkyl substituted forms thereof are used as starting materials. The hydroxy protecting groups (X) are known in the art and are described in Chapter 3 of Protective Groups in Organic Chemistry , McOmie Ed., Plenum Press, New York (1973), and Chapter 2 of Protective Groups in Organic Synthesis , Green, John, J. Wiley and Sons, New York (1981); preferred are ester forming groups such as formyl, acetyl, substituted acetyl, propionyl, butynyl, pivalamido, 2-chloroacetyl, benzoyl, substituted benzoyl, phenoxycarbonyl, methoxyacetyl; carbonate derivatives such as phenoxycarbonyl, t-butoxycarbonyl ethoxycarbonyl, vinyloxycarbonyl, 2,2,2-trichloroethoxycarbonyl and benzyloxycarbonyl; alkyl ether forming groups such as benzyl, diphenylmethyl, triphenylmethyl, t-butyl, methoxymethyl, tetrahydropyranyl, allyl, tetrahydrothienyl, 2-methoxyethoxy methyl; and silyl ether forming groups such as trialkylsilyl, trimethylsilyl, isopropyldialkylsilyl, alkyldiisopropylsilyl, triisopropylsilyl, t-butyldialkylsilyl and 1,1,3,3,-tetraisopropyldisloxanyl; carbamates such as N-phenylcarbamate and N-imidazoylcarbamate; however more preferred are benzoyl, mono-substituted benzoyl and disubstituted benzoyl, acetyl, pivaloyl, triphenylmethyl ethers, and silyl ether forming groups, especially t-butyldimethylsilyl; while most preferred is benzoyl. Solvents suitable for use in the present process may be selected from the group consisting of dichloromethane, 1,2-dichloroethane, 1,1,2-trichloroethane, propyl acetate, isopropyl acetate, amyl acetate, anisole, toluene, xylenes, and mixtures thereof; preferred are propyl acetate, 1,2-dichloroethane, anisole, and mixtures thereof. After the solvent is added to an anomeric mixture of 3,5-hydroxy protected 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-alkylsulfonate, the solution is heated from about 30°C to about 50°C to form a solution. The counter solvent is then added to the solution. Suitable counter solvents for use in the present process may be selected from the group consisting of ethanol, denatured ethanol (denatured with methanol, toluene, ethyl acetate, isopropyl alcohol, methyl isobutyl ketone, or mixtures thereof), isopropyl alcohol, methanol, ethanol, methyl-t-butyl ether, diethyl ether, and mixtures thereof; preferred are ethanol and isopropyl alcohol. The temperature of the mixture is then lowered in to about 23°C to about -10°C and more preferably to about 23°C to about 5°C. In a preferred embodiment 3,5-hydroxy protected 2-deoxy-2,2-difluoro-D-ribofuranosyl-1-a-alkylsulfonate crystals such as 2-deoxy-2,2-difluoro-D-ribofuranosyl 3,5-di-O-benzoyl-1-a-methanesulfonate crystals are formed when the temperature is lowered. The present invention is a crystallization process and not a precipitation of an amorphous solid material. The crystals formed contain a well developed crystalline face and have high birefringence when viewed by crystallagraphic microscopy. When the anomeric ratio is below 50 percent alpha anomer in the present process, in the absence of a spontaneous crystallization of anomers, it may be necessary to add some seed crystals of the alpha anomer in order to facilitate crystallization. The present process is preferably carried out under atmospheric conditions and is substantially complete in about 30 minutes to about 20 hours, and more preferably complete in about 2 hours. The present process is particularly advantageous because of its simplicity and the unexpected yields which correspond to the obtention of an individual anomer in quantities greater than present in the anomeric mixture. When applied to an alpha and beta-anomer mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-alkylsulfonate, the present process permits obtention of the alpha anomer in crystalline form which is of particular interest since it is useful in the glycoslation of biologically important beta-anomer nucleosides. The following examples illustrate specific aspects of the present invention and are not intended to limit the scope thereof in any respect and should not be so construed. Example 1 A anomeric mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (11.9 g) in dichloromethane (45 ml) was heated to 30°C. Diethyl ether was added until the solution became cloudy (about 45 ml) As the solution was slowly cooled to room temperature, dense, cubic-like crystals formed. After 2 hours at room temperature, a needle-like crystal began to form, at which time the supernatant was decanted. The cube-like crystals were collected, rinsed with a 3:1 solution of dichloromethane and diethyl ether and then dried. Physical data analysis showed that the cube-crystals to be 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-b-methanesulfonate. A few hours later, the needle-like crystals in the mother liquor were collected by filtration. A physical data analysis of the needle-like crystals showed them to be 2-deoxy-2,2-difluoro-D-ribofuranoysl-3,5-di-O-benzoyl-1-a-methanesulfonate. m.p. 88°C-89°C; [a] D (C=1.01, solvent: CHCl 3 @589 nm) +84.2°; [a] 365 (C=1.01, solvent: CHCl 3 , @365 nm) +302.0°, FDMS 456 (m+1). Example 2 An anomeric mixture of 2-deoxy-2,2-difluoro D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (11.53 g, 78% alpha and 22% beta anomer) in anisole (35 ml) was heated to 30°C-40°C. 3A-alcohol (145 ml) was added and the solution was cooled to 15°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 18 hours. The 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 5.7 g. The yield was 49.8 percent. The filtrate contained a 1:1 ratio of the two anomers. Example 3 An anomeric mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (11.9 g, 78% alpha and 22% beta anomer) in anisole (24 ml) was heated to 30°C-40°C. 3A alcohol (120 ml) was added and the solution was cooled to 30°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 17 hours. The 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 6.2 g. The yield was 55 percent. Example 4 An anomeric mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (11.9 g, 78% alpha and 22% beta anomer) in dichloromethane (12 ml) was heated to 40°C. 3A alcohol (24 ml) was added and the temperature of the solution was reduced to 30°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 17 hours. The 2-deoxy-2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 5.9 g. The yield was 51 percent. Example 5 An anomeric mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (11.9 g, 78% alpha and 22% beta anomer) in 1,2-dichloroethane (12 ml) was heated to 30°C - 40°C. 3A alcohol (36 ml) was added and the solution was cooled to 23°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 17 hours. The 2-deoxy-2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 7.3 g. The yield was 61 percent. Example 6 An anomeric mixture of 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (25 g, 70% alpha and 30 beta anomer) was heated to 30°C-40°C in ethanol (300 ml). Next, anisole (72 ml) was added and the temperature of the solution was reduced to 15°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 3 hours. The 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 13.5 g. The yield was 52 percent. Example 7 An anomeric mixture of 2-deoxy-2,difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methansulfonate (3.38 g, 70% alpha and 30% beta anomer) was heated to 30°C-40°C in amyl acetate (8.3 ml). Next, ethanol (40 ml) was added and the temperature of the solution was reduced to 15°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 3 hours. The 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 2.31 g. The yield was 68 percent. Example 8 An anomeric mixture of 2-deoxy,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (12 g, 80% alpha and 20% beta anomer) was heated to 30°C-40°C in dichloromethane. The dichloromethane was then removed via vacuum distillation. Next, a mixture of anisole (48 ml) and ethanol (144 ml) was added and the temperature of the solution was reduced to 0°C to 5°C. After 2 hours, the 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 4.6 g. The yield was 38 percent. Example 9 An anomeric mixture of 2-deoxy,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (7.3 g, 68% alpha and 31% beta anomer) was heated to 30°C - 40°C in dichloromethane. The dichloromethane was then removed via vacuum distillation. Next, a mixture of propyl acetate (20 ml) and ethanol (70 ml) was added and the temperature of the solution was reduced to 15°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 15°C for 3 hours. The 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 4.62 g. The yield was 63 percent. Example 10 An anomeric mixture of 2-deoxy,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-methanesulfonate (100 g, 66% alpha and 33% beta anomer) was heated to 50°C in isoamyl acetate (290 ml). Next, ethanol (1200 ml) was added and the temperature of the solution was reduced to 15°C. After seeding the solution with 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals (0.1 g - 0.3 g), the slurry was kept at 5°C for 3 hours. The 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals harvested weighed 36.7 g. The yield was 35.5 percent.

Claims: A process for separating an anomeric mixture of the formula: wherein each X is independently selected from hydroxy protecting groups and R is an alkyl or substituted alkyl; comprising contacting the anomeric mixture with a solvent selected from dichloromethane, 1,2-dichlorethane, 1,1,2-trichloroethane, propyl acetate, isopropyl acetate, amyl acetate, anisole, toluene, xylenes and mixtures thereof; heating; adding a countersolvent selected from ethanol, denatured ethanol, isopropyl alcohol, methanol, methyl-t-butyl ether, diethyl ether and mixtures thereof; and lowering the temperature to 23°C to -10°. The process of Claim 1 wherein the solvent is selected from the group consisting of dichloromethane, 1,2-dichloroethane, 1,1,2-trichloroethane, propylacetate, isopropyl acetate, amyl acetate, anisole, toluene, xylenes, and mixtures thereof. The process of Claim 1 wherein the heating is to 30°C to 50°C. The process of Claim 1 wherein the countersolvent is selected from the group consisting of ethanol,denatured ethanol (denatured with methanol, toluene, ethyl acetate, isopropyl alcohol, methyl isobutyl ketone, or mixtures thereof), isopropyl alcohol, methanol, ethanol, methyl-t-butyl ether, diethyl ether, and mixtures thereof. The process of Claim 1 wherein R is selected from methyl, ethyl, and substituted forms thereof. The process of Claim 1 wherein 2-deoxy-2,2-difluoro-D-ribofuranosyl-3,5-di-O-benzoyl-1-a-methanesulfonate crystals are formed.

Inventors: CHOU TA-SEN, MCCARTHY TIMOTHY JAMES, CHOU, TA-SEN, MCCARTHY, TIMOTHY JAMES
Applicants: LILLY CO ELI, ELI LILLY AND COMPANY
Application year: 1993
Main classification: C07H11
IPC codes: C07H11, C07H1, C07H13