CLONED LEUCONOSTOC MESENTEROIDES GLUCOSE-6-PHOSPHATE DEHYDROGENASE GENES AND METHOD OF MAKING SAME

Abstract: The G1c6PD genome of Leuconostoc mesenteroides is isolated. Oligonucleotides complementary to sequences upstream and downstream to the G1c6PD genome are prepared and used to amplify the genome by the polymerase chain reaction. The amplified gene is isolated and cloned into pUC19. The recombinant plasmid expresses the gene in E. coli.

Description: CLONED LEUCONOSTOC MESENTEROIDES GLUCOSE-6-PHOSPHATE DEHYDROGENASE GENES AND METHOD OF MAKING SAME Background of the Invention; Glucose-6-phosphate dehydrogenase (GlcβPD) from the bacterium Leuconostoc mesenteroides has commercial utility in the enzymatic oxidation of glucose 6 phosphate. This enzyme is capable of utilizing either NAD+ or NADP+ as a coenzyme, whereas GlcβPD from other conventional sources such as human erythrocytes or rat liver can utilize NADP+ but show little if any activity with NAD+. L. mesenteroides is employed in commercial enzyme immunoassay systems, clinical laboratory determinations such as glucose analysis, and other useful chemical reactions requiring the oxidation of glucose-6-phosphate. Obtaining GlcβPD by standard enzyme purification methods in commercially practicable amounts has been expensive and difficult. Using recombinant DNA technology, it is possible to produce enzymes such as GlcβPD economically and in large amounts with bacteria such as E. coli. Various techniques of gene cloning are known to the art, and others have succeeded in cloning genes for GlcβPD from sources such as Drosophila melanogaster, rat liver, and human erythrocytes, the GlcβPD resulting form such genes lacks the desirable properties of that from Leuconostoc mesenteroides. Until applicant's invention, it is believed that no one has successfully cloned the GlcβPD gene from Leuconostoc mesenteroides. A purported cloning of the L. mesenteroides gene was published by Murphy et al. (J. Bacteriology, Vol. 169, pp 334-339, Jun. 1987). Objects and Summary of the Invention; It is therefore an object of the present invention to provide a DNA clone of the L. mesenteroides GlcβPD gene, which can be used to economically produce large amounts of GlcβPD. It is a further object of the invention to provide a plasmid containing the L. mesenteroides GlcβPD gene. It is yet another object of the present invention to provide a method for cloning the gene of L. mesenteroides. It is still another object of the present invention to provide a method for the production of a plasmid containing the L. mesenteroides GlcβPD gene. It is a further object of the present invention to provide a method for the economical production of Glucose-6-phosphate dehydrogenase derived from a clone of the L. mesenteroides GlcβPD gene. These and other and further objects of the present invention, together with additional features and advantages accruing therefrom will be apparent from the following description of a preferred embodiment of the invention as shown in the accompanying drawings, wherein: Brief Description of the Drawings; Fig. 1 is a restriction map of a DNA clone of L. mesenteroides GlcβPD gene; Fig. 2A is a block diagram showing the isolation and amplification of an upstream fragment of the L. mesenteroides GlcβPD gene from a plasmid; Fig. 2B is a diagram of a PCR amplified L. mesenteroides GlcβPD gene; Fig. 3 is the DNA sequence of the L. mesenteroides GlcβPD gene. Fig. 4 is an amino acid sequence map comparing the composition of L. mesenteroides GlcβPD and human erythrocyte GlcβPD. Detailed Description of a Preferred Embodiment; Glucose-6-phosphate dehydrogenase (GlcβPD) from Leuconostoc mesenteroides can utilize either NAD+ or NADP+ as coenzyme in the oxidation of glucose-6-phosphate. The enzyme is a dimer with identical subunits, of M.W. 54,800. The kinetic mechanism differs depending on whether NAD+ or NADP+ is used in the reaction. Binding of NAD+ produces a large conformational change in the enzyme. The genes for GlcβPDs from Drosophilia melanogaster, rat liver, and human erythrocyte have been cloned. The cloning of the L. mesenteroides GlcβPD gene will allow for the comparison to other GlcβPD sequences and for the design of site directed mutagenesis studies to help determine the enzyme mechanism. This information will be augmented by the 3-dimensional structure of the enzyme which is presently under study. The cloning of the L. mesenteroides GlcβPD gene was described previously. No sequence information was presented in that paper and the results of the cloning of the gene presented here differ from those in that paper. Materials and Methods Materials. Restriction enzymes, DNA modifying enzymes, pUC19, M13mpl8, and M13mpl9 were from BRL. Taq polymerase was from Perkin-El er Cetus, modified T4 DNA polymerase (Sequenase) from U.S. Biochemical, radionucleotides from New England Nuclear, Geneclean from BIO 101, λGEMll from Promega, and the enhanced chemiluminence kit (ECL) was from Amersham. All other reagents were analytical grade. Bacterial strains. L. mesenteroides was from the American Type Culture Collection (ATCC 12291) . E. coli strains DH5 and DH5 F were provided by Dr. David T. Sullivan (Syracuse University) , DH5 MCR was from BRL and MB406 and LE392 were from Promega. Amino acid sequencing. CNBR Cleavage. The protein was subjected to a 24 hour CNBr cleavage (CNBr 1 mg/ml in 70% formic acid) and then lyophilized three times. The resulting fragments were separated by gel filtration, on 30 cm Biosil TSK 250- TSK 125 columns, in tandum, using 3 M quanidine HC1, 50 mM sodium phosphate, 10 mM 2- mercaptoethanol pH 7.0 at 1.0 ml/min isocratic. Five major peaks were collected, dialysed against double distilled H20 twice in 1000 molecular weight cut-off tubing and lyophilized. Portions of these fractions were re-run on a Waters Bondapak C18 column using various gradients, mostly 25% - 65% or. occasionally to 75% B over 80 - 100 min, where A was 0.1% TFA and B was 0.1% TFA in 80% acetronitrile. Maleylated Peptides. The protein was dissolved in 2.0 ml of 0.1 M-sodium pyrophosphate buffer at pH 9.0. It was then treated with 1.0 M-maleic anhydride in redistilled dioxane added in 6 portions of 50 μl. During the reaction the pH was maintained at 9.0 with 0.1 M NaOH. Tryptic digest of the enzyme occurred in 0.1 M ammonium bicarbonate at 37 C for 4 hrs. The product was lyophilized and run on a Waters μBondapak column under the same conditions as described above. Thermolysin. GlcβPD was dissolved in 100-mM-NH4HCO3 and 5 M CaC12 in the presence of thermolysin at a concentration of 2% enzyme/substrate (w/w) . incubation proceeded at 37°C for at least 4 hours. The digest was run on a Waters μBondapak reverse phase C18 column, at a flow rate of 1.5 ml/min, with 0-75% B over 150 min where buffer A was 0.1% TFA and buffer B was 0.1% TFA in MeCn. Some peptides were further purified using a Beckman Ultrasphere-ODS reverse phase C18 column and an ammonium acetate gradient system where buffer A was 10 mM ammonium acetate, pH 6.9 and buffer B was 20 M ammonium acetate: acetonitrile 50:50; the gradient was 0-75% B over 75 min at a flow rate of 1.0 ml/min. Endoprotinase-Lys C. The protein was dissolved in 0.1 M ammonium bicarbonate buffer, pH 9.0 and endoprotinase-Lys C was added at a ratio of 1:100. Incubation proceeded at 37°C for 1-2 hours after which another aliquot of endoprotinase-Lys C was added and incubation continued overnight. The mixture was then applied to a Hibar reverse phase C18 column and fractions were eluted using TFA gradient 25-100% B over 70 minutes. Endoprotinase-Arg C. The digestion procedure with this protease was similar to that for endoprotinase-Lys C, except that the pH was 8.0 - 8.5 and the ratio used was 1:50. Endoprotinase-Glu C. Digestion with this protease was performed in 50 mM sodium phosphate, pH 7.8 using a ratio of 1:100. The mixture was separated on a C18 column using a TFA gradient 20- 100% B over 90 min. at a flow rate of 1.0 ml per min., where buffer A was 0.1% TFA and buffer B was 0.1% TFA in 80% autonitrite. Oligonucleotides. Oligonucleotides 1 (5* GCRTTYTCRAARTCRTTYTC 3') and 2 (5'CCARAAXACCCAXGCRTC 3 1 ), where X is A, G, T, or C, R is A or G, and ϊ is C or T, were synthesized at Queen's University, based on the complementary sequences to ENDFENA (amino acids 161- 167) and DAWVFW (amino acids 479-484) respectively. O l i g o n u c l e o t i d e s 3 ( 5 1 TCACCTGTACCACCGAAGAATGTAACCAATGTCTTAATTTCTGAAAC 3*) , 4 (5' CTGGTGTGTCATTTGTTGGGTTC3 ' ) , and 5 (5 1 GGGGATCCTATCTAAAAGCTACTTCA 3') were synthesized at the Syracuse University DNA and Protein Core Facility. Oligonucleotide 3 is complementary to the N- terminal amino acid sequence VSEIKTLVTFFGGTGD using the best codon frequencies from the sequence of the bases coding for the C-terminal 420 amino acids, while oligonucleotides 4 and 5 were based on DNA sequence. Southern Blots. Southern blots were done using the ECL kit except when the oligonucleotides were used as probes, when the method of Wallace and Miyada was used. Construction and Screening of L. mesenteroides libraries. L. mesenteroides genomic DNA was isolated by the method of Murphy et al. (X) . Restriction fragments of 3.5-10.0kb were isolated (using Geneclean) from an Mbo 1 partial digest and ligated to Bam Hi cut phosphatase treated pUC9. The ligation mixture was used to transform DH5q . Recombinant plasmids from transformed cells were separated from religated pUC9 by gel electrophoresis, isolated (using Geneclean) , and transformed back into DHSg. The library was screened with oligonucleotides 1 and 2 by the method of Wallace and Miyada (X) . Genomic libraries in λ GEM11 were made by ligating electroeluted 14-20 Kb fragments of an Mbo 1 partial digest to the Bam Hlλ arms. Theλ libraries were screened by the method of Wahl and Berger (X) . DNA techniques. Isolation of plasmids and plasmid transformations were performed as described. The procedures of Sambrook et al. were used for standard DNA protocols, polymerase Chain Reaction. The polymerase chain reaction was done on an Ericomp Twinblock System for 30 cycles, each cycle consisting of l 1 at 94°C, 1' at 42°C, and 5' at 68°C. DNA Sequencing. DNA sequencing was done by the method of Sanger et al. (X) on M13 subclones or on double stranded DNA using either the Klenow fragment or Sequenase. Assays of GlcβPD Activity. Enzyme activity was measured at 25o by following the appearance of NADPH at 340nm. Assays were initiated by the addition of enzyme to 1.0 ml of solution containing 33mM Tris Cl (pH 7.6), 1.6mM Glc6P, and 114μM NADP+. RESULTS Cloning of the glucose-6-phosphate dehydrogenase gene. The amplified L. mesenteroides pUC9 library was screened using oligonucleotides 1 and 2. After an initial screen and a rescreen, five clones were isolated. Restriction analysis of the clones revealed that all contained an identical 5.3 kb insert (Fig. 1). A Southern blot of the clone (plmzΔ N65) revealed that both oligonucleotides hybridized at one end of the insert (data not shown) . Sequencing of the clone in this region revealed that it lacked the bases coding for the 65 N-terminal amino acids and the upstream DNA. The insert was sequenced over the coding region present and the downstream region (Fig. 1) . To obtain a full length clone two λ GEM 11 libraries were screened. One library in E. coli strain MB406 was screened with the Eco Rl- Sph 1 fragment of pLmzΔ N65. Clones isolated from this library did not contain the DNA encoding the N-terminal amino acids. The other library, in E. coli strain LE392, was screened with the Eco Rl- Sph 1 fragment and oligonucleotide 3. No clones were isolated that hybridized to oligonucleotide 3, although this probe did hybridize to L. mesenteroides genomic DNA on a Southern blot (data not shown) . A possible explanation for the difficulty in cloning the entire GlcβPD gene is that the L. mesenteroides DNA may contain modified DNA sequences that are cleaved by E. coli restriction enzyme systems. Southern analysis of L. mesenteroides DNA by the Eco Rl- Sph 1 fragment and oligonucleotide 3 gave a partial map of restriction sites upstream from the gene (data not shown). An Nsi 1 site located 2.7 kb upstream from the start of the gene was found. Nsi 1-Sph 1 digests of L. mesenteroides genomic DNA produced 4.4 kb fragments containing the GlcβPD gene that were isolated by electroelution, ligated to pUC19, and transformed into E. coli strain DH5gMCR which lacks three known restriction enzymes that cleave modified DNA. No clones containing the GlcβPD gene were isolated. To obtain unmodified DNA of the gene, 4.5 Kb Nsi 1-Sca 1 fragments containing the entire GlcβPD gene were isolated by electroelution and ligated to pUC19. The recombinant plasmids were linearized and then amplified by PCR using oligonucleotide 4 which is complementary to the downstream DNA sequence and the reverse sequencing primer. No PCR product was observed, presumably due to the length (4.4 kb) of the desired product. Oligonucleotide 3, previously used to screen a ^library and for southern analysis of the upstream DNA, and the reverse primer were used to amplify the upstream DNA (Fig. 2A) . A 2.7 Kb PCR product was isolated by electroelution and partially sequenced using oligonucleotide 3 as the primer (Fig. 2A) . Oligonucleotide 5, based on the upstream DNA sequence of the PCR product and containing an engineered Bam Hi site, and oligonucleotide 4 were used in a PCR on L. mesenteroides genomic DNA to amplify the entire gene (Fig. 2B) . A 1.8 Kb PCR fragment was isolated, digested by Bam Hi and Sphl, ligated to pUC19, and transformed into DH5α MCR. Transformed colonies containing the recombinant plasmid (pLmz) had Glc6PD activity that could utilize either NAD+ or NADP+. The NAD+ reaction had 1.8 times the specific activity of the NADP+ reaction, this is characteristic of L. mesenteroides Glc6PD. Sequencing of pLmz showed that the entire gene was present (Fig. 2B) . The sequence of the gene shows the enzyme is composed of 485 amino acids (Fig. 3) . The codon usage of the L. mesenteroides Glc6PD gene is given in Table 1. Putative transcription and translation initiation sites are seen and may explain the presence of enzyme activity. The specific activity of DH5 α MCRL/pLmz (with NADP+ as coenzyme) is over 5000 times that of DH5 $ MCR (data not shown) . Discussion The L. mesenteroides Glc6PD gene encodes a polypeptide of 485 amino acids. The subunit molecular weight determined by the DNA sequence is 54,316 which corresponds well to the experimental value of 54,800. The isoelectric point of 4.7 also corresponds to the experimental value of 4.6. The enzyme differs from other GlcβPDs in that it can utilize either NAD+ or NADP+ as coenzyme. A comparison to the human erythrocyte Glc6PD shows that 33% of the amino acids are identical (Fig. 4) The hydrophobicities of the two enzymes are similar (Fig. 5) . The human erythrocyte Glc6PD is NADP+ specific and is inhibited by steroids which do not inhibit the L. mesenteroides enzyme. The partial clone (pLmz Λ N65) was obtained using oligonucleotides based on amino acid sequences that contained errors. However, the oligonucleotides were still able to hybridize to only the Glc6PD gene. The difficulty in cloning the entire gene may have resulted from the restriction by E. coli host cells on L. mesenteroides DNA. The L. mesenteroides genomic DNA may be modified on a site that is recognized by an unidentified E. coli restriction system present in strain DH5αMCR. This would explain the difficulty in cloning the DNA upstream to the gene and the portion of the gene encoding the 65 N-terminal amino acids. By using PCR to amplify the gene with unmodified nucleotides, the E. coli could accept the L. mesenteroides GlcβPD gene. The expression of L. mesenteroides GlcδPD in E. coli is due to the presence of the appropriate transcription and translation sequences. The previous paper reporting the cloning of the L. mesenteroides GlcδPD did not include a sequence of the cloned gene. The restriction map given in that paper is completely different from the one presented here. The authors present a 3.4 kb restriction map and localize the gene to a 2.4 kb fragment. Their restriction map contains sites not present in pLmz and the location and orientation of common sites is not the same. The authors do not indicate the relative specific activities of the NAD+ and NADP+ reactions (which were not measured by appearance of NADH or NADPH at 340 nm) and present no DNA or amino acid sequence information. The properties of the pLmz gene product are consistent with the physical properties of L. mesenteroides GlcβPD, the molecular weight, isoelectric point, amino acid sequence (including the absence of cysteine residues) , and enzyme activity ratios with respect to NAD+ and NADP+ are the same indicating we have cloned the L. mesenteroides GlcδPD gene. While this invention has been explained with reference to the structure disclosed herein, it is not confined to the details as set forth and this application is intended to cover any modifications and changes as may come within the scope of the following claims. Sequence Listing; (1) GENERAL INFORMATION: (i) APPLICANT: Levy, H. Richard Lee, W. Theodore (ii) TITLE OF INVENTION: CLONED LEUCONOSTOC MESENTEROIDES GLUCOSE-6 PHOSPHATE DEHYDROGENASE GENES AND METHOD OF MAKING SAME (iii) NUMBER OF SEQUENCES: 7 (iv) CORRESPONDENCE ADDRESS: (A) ADDRESSEE: Wall and Roehrig (B) STREET: 217 Montgomery Street (C) CITY: Syracuse (D) STATE: New York (E) COUNTRY: United States of America (F) ZIP: 13202 (v) COMPUTER READABLE FORM: (A) MEDIUM TYPE: 5.25 inch Diskette, 360Kb storage (B) COMPUTER: IBM Compatible PC (C) OPERATING SYSTEM: MSDOS (D) SOFTWARE: Word perfect, Ver. 5.1 (vi) CURRENT APPLICATION DATA: (A) APPLICATION NUMBER: 07/596,867 (B) FILING DATE: 12 OCT 1990 (C) CLASSIFICATION: Not available (vii) PRIOR APPLICATION DATA: None (viii) ATTORNEY/ABENT INFORMATION: (A) NAME: Bickel, Arthur S. (B) REGISTRATION NUMBER: 34123 (C) REFERENCE/DOCKET NUMBER 270 P 030 (ix) TELECOMMUNICATION INFORMATION: (A) TELEPHONE: (315) 422 7383 (B) TELEFAX: (315) 422 9331 (2) INFORMATION FOR SEQ ID NO:l (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 1963 (B) TYPE: Genomic DNA (C) STRANDEDNESS: Double (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: Genomic DNA (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: NO (v) FRAGMENT TYPE: Not applicable (vi) ORIGINAL SOURCE: (A) ORGANISM: Leuconostoc mesenteroides (B) STRAIN: ATCC 12291 (vii) IMMEDIATE SOURCE: (A) LIBRARY: pLm2 (viii) POSITION IN GENOME: unknown (x) PUBLICATION INFORMATION: None (Xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1 GGATCCTATC TAAAAGCTAC TTCATTTGTT GTACTCCTCA TTTGCTTTTT ( TATTATTGTG TAACGAACAG GTGATAAGGT CAAGTGCAAA ATTTCACGAC (1 AGATATCCAA TTTTAGATGA TAAACGTTTA AAAAACGCTG AAAACGGTTA (1 CTTTTTCCGC TATTTTGCGC TATAATGAAA AGTGAATTTA ACTAAAAATA (2 AGGGGTACAT CATG (2 GTT TCA GAA ATC AAG ACG TTA GTA ACT TTC TTT GGT (2 Val Ser Glu lie Lys Thr Leu Val Thr Phe Phe Gly GGC ACT GGT GAC TTG GCC AAG CGT AAG CTT TAC CCA TCA GTT TTC AAT (2 Gly Thr Gly Asp Leu Ala Lys Arg Lys Leu Tyr pro Ser Val Phe Asn CTT TAT AAA AAA GGC TAC TTG CAA AAG CAT TTT GCC ATT GTT GGA ACG (3 Leu Tyr Lys Lys Gly Tyr Leu Gin Lys His Phe Ala lie Val Gly Thr GCC CGT CAA GCC CTC AAT GAT GAC GAA TTC AAA CAA TTG GTT CGT GAT (3 Ala Arg Gin Ala Leu Asn Asp Asp Glu Phe Lys Gin Leu Val Arg Asp TCA ATT AAA GAT TTC ACT GAC GAT CAA GCA CAA GCT GAG GCG TTC ATC (4 Ser lie Lys Asp Phe Thr Asp Asp Gin Ala Gin Ala Glu Ala Phe lie GAA CAT TTC TCA TAC CGT GCA CAC GAC GTA ACA GAT GCT GCT TCA TAC (4 Glu His Phe Ser Tyr Arg Ala His Asp Val Thr Asp Ala Ala Ser Tyr GCT GTT TTA AAA GAG GCG ATT GAA GAA GCT GCC GAC AAA TTT GAT ATC (5 Ala Val Leu Lys Glu Ala lie Glu Glu Ala Ala Asp Lys Phe Asp lie GAT GGC AAC CGC ATT TTC TAT ATG TCA GTT GCG CCA CGT TTC TTT GGT (5 Asp Gly Asn Arg lie Phe Tyr Met Ser Val Ala Pro Arg Phe Phe Gly ACA ATT GCC AAA TAT CTT AAG TCA GAA GGC CTA CTA GCT GAC ACT GGT (6 Thr lie Ala Lys Tyr Leu Lys Ser Glu Gly Leu Leu Ala Asp Thr Gly TAC AAC CGT TTG ATG ATT GAA AAG CCT TTC GGT ACA TCA TAT GAC ACA (6 Tyr Asn Arg Leu Met lie Glu Lys Pro Phe Gly Thr Ser Tyr Asp Thr GCT GCC GAA CTC CAA AAT GAC TTG GAA AAC GCA TTT GAT GAT AAC CAA (73 Ala Ala Glu Leu Gin Asn Asp Leu Glu Asn Ala Phe Asp Asp Asn Gin CTA TTC CGT ATT GAC CAC TAC CTT GGT AAG GAA ATG GTT CAA AAC ATT (7 Leu Phe Arg He Asp His Tyr Leu Gly Lys Glu Met Val Gin Asn He GCT GCC CTT CGC TTT GGT AAC CCA ATT TTC GAT GCT GCT TGG AAC AAG (82 Ala Ala Leu Arg Phe Gly Asn pro He Phe Asp Ala Ala Tr ' p Asn Lys GAT TAC ATC AAG AAC GTT CAA GTA ACA TTG TCA GAA GTC TTG GGT GTC (87 Asp Tyr He Lys Asn Val Gin Val Thr Leu Ser Glu Val Leu Gly Val GAA GAA CGT GCC GGC TAC TAT GAC ACA GCC GGT GCA TTG CTT GAC ATG (92 Glu Glu Arg Ala Gly Tyr Tyr Asp Thr Ala Gly Ala Leu Leu Asp Met ATT CAA AAC CAC ACC ATG CAA ATT GTT GGT TGG TTA GCC ATG GAA AAA (97 He Gin Asn His Thr Met Gin He Val Gly Trp Leu Ala Met Glu Lys CCA GAA TCA TTC ACT GAC AAA GAC ATT CGT GCC GCT AAA AAC GCA GCC (101 Pro Glu Ser Phe Thr Asp Lys Asp He Arg Ala Ala Lys Asn Ala Ala TTT AAT GCT TTG AAG ATC TAT GAT GAA GCA GAA GTT AAC AAA TAC TTT (10 Phe Asn Ala Leu Lys He Tyr Asp Glu Ala Glu Val Asn Lys Tyr Phe GTT CGT GCA CAA TAT GGT GCC GGT GAT TCA GCT GAC TTC AAG CCA TAC (11 Val Arg Ala Gin Tyr Gly Ala Gly Asp Ser Ala Asp Phe Lys Pro Tyr CTT GAA GAA TTA GAC GTA CCT GCT GAT TCT AAA AAC AAT ACC TTC ATC (11 Leu Glu Glu Leu Asp Val Pro Ala Asp Ser Lys Asn Asn Thr Phe He GCC GGC GAA TTG CAA TTT GAT TTG CCA CGT TGG GAG GGT GTC CCA TTC (12 Ala Gly Glu Leu Gin Phe Asp Leu Pro Arg Trp Glu Gly Val Pro Phe TAT GTC CGT TCA GGT AAG CGC TTA GCT GCT AAA CAG ACA CGG GTT GAT (12 Tyr Val Arg Ser Gly Lys Arg Leu Ala Ala Lys Gin Thr Arg Val Asp ATC GTC TTT AAG GCT GGC ACG TTT AAC TTT GGT TCA GAA CAA GAA GCA (13 He Val Phe Lys Ala Gly Thr Phe Asn Phe Gly Ser Glu Gin Glu Ala CAA GAA GCT GTC TTG TCA ATT ATC ATT GAT CCA AAG GGT GCT ATC GAA (13 Gin Glu Ala Val Leu Ser He He He Asp Pro Lys Gly Ala He Glu TTG AAG TTG AAC GCC AAG TCA GTT GAA GAT GCT TTC AAC ACA CGT ACA (140 Leu Lys Leu Asn Ala Lys Ser Val Glu Asp Ala Phe Asn Thr Arg Thr ATT GAC TTA GGT TGG ACT GTA TCT GAC GAA GAT AAG AAG AAC ACG CCA (145 He Asp Leu Gly Trp Thr Val Ser Asp Glu Asp Lys Lys Asn Thr Pro GAA CCA TAC GAA CGT ATG ATT CAC GAC ACT ATG AAT GGT GAT GGC TCT (149 Glu Pro Tyr Glu Arg Met He His Asp Thr Met Asn Gly Asp Gly Ser AAC TTC GCT GAC TGG AAT GGC GTT TCA ATC GCT TGG AAG TTC GTT GAT (154 Asn Phe Ala Asp Trp Asn Gly Val Ser He Ala Trp Lys Phe Val Asp GCT ATT TCA GCC GTT TAT ACC GCA GAT AAA GCA CCA CTT GAA ACT TAC (159 Ala He Ser Ala Val Tyr Thr Ala Asp Lys Ala Pro Leu Glu Thr Tyr AAG TCG GGC TCA ATG GGT CCT GAA GCA TCC GAT AAA TTA TTG GCT GCC (164 Lys Ser Gly Ser Met Gly Pro Glu Ala Ser Asp Lys Leu Leu Ala Ala AAT GGT GAT GCT TGG GTG TTT AAA GGT (166 Asn Gly Asp Ala Trp Val Phe Lys Gly TAATTAAAGC CCCAAAAAAA CGATCGATTG TGATCGTTTT TTTATTGCCC (171 AATTTACACA GTTTCATCAA GAATCCGTTT TGTTTCACGA AAAACAGCCG (176 CTAAGTTTTT GTACTGATCC GCATGCAGCA CAACAGTAAC AAAGTGATGC (181 TTTTTGTACG TAAAGAACCC AACAAATGAC ACACCAGATT TAACAGAAAC (186 ACCTAATTTA CCACCCGTGA CCTGATATTT TGTCTGACTA AAATAGTTAT (191 TCATTAGTGA AAAAATTTGA CGCTTGAGTT GTGCCATTGA AAGT (196 (3) INFORMATION FOR SEQ ID NO:2 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 20 (B) TYPE: Nucleic Acid (C) STRANDEDNESS: Double (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: Synthetic Oligonucleotide (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: No (v) FRAGMENT TYPE: Not applicable (vi) ORIGINAL SOURCE: Not applicable (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME Not applicable (x) PUBLICATION INFORMATION: None (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2 GCRTTYTCRA ARTCRTTYTC ( (4) INFORMATION FOR SEQ ID NO:3 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 18 (B) TYPE: Nucleic Acid (C) STRANDEDNESS: Double (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: Synthetic Oligonucleotide (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: No (v) FRAGMENT TYPE: Not applicable (vi) ORIGINAL SOURCE: Not applicable (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME Not applicable (x) PUBLICATION INFORMATION: None (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3 CCARAANACC CANGCRTC (1 (5) INFORMATION FOR SEQ ID NO:4 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 47 (B) TYPE: Nucleic Acid (C) STRANDEDNESS: double (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: Synthetic Oligonucleotide (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: No (v) FRAGMENT TYPE: Not applicable (vi) ORIGINAL SOURCE: (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME Not applicable (x) PUBLICATION INFORMATION: None ( i) SEQUENCE DESCRIPTION: SEQ ID NO: 4 TCACCTGTAC CACCGAAGAA TGTAACCAAT GTCTTAATTT CTGAAAC (4 (6) INFORMATION FOR SEQ ID NO:5 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 23 (B) TYPE: Nucleic Acid (C) STRANDEDNESS: Double (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: Synthetic Oligonucleotide (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: No (v) FRAGMENT TYPE: Not applicable (vi) ORIGINAL SOURCE: (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME:Not applicable (x) PUBLICATION INFORMATION: None (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 5 CTGGTGTGTC ATTTGTTGGG TTC ( (7) INFORMATION FOR SEQ ID NO:6 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 26 (B) TYPE: Nucleic Acid (C) STRANDEDNESS: Double (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: Synthetic Oligonucleotide (iii) HYPOTHETICAL: No (iv) ANTI-SENSE: No (v) FRAGMENT TYPE: Not applicable (vi) ORIGINAL SOURCE: Not applicable (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME: Not applicable (x) PUBLICATION INFORMATION: None (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 6 GGGGATCCTA TCTAAAAGCT ACTTCA (2 (8) INFORMATION FOR SEQ ID NO:7 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 16 (B) TYPE: Amino Acid (C) STRANDEDNESS: Not applicable (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: peptide (iii) HYPOTHETICAL: no (iv) ANTI-SENSE: Not applicable (v) FRAGMENT TYPE: N-terminal (vi) ORIGINAL SOURCE: Leuconostoc mesenteroides glucose 6-phosphate dehydrogenase (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME: Not applicable (x) PUBLICATION INFORMATION:- None (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 7 Val Ser Glu He Lys Thr Leu Val Thr Phe Phe Gly Gly Thr Gly Asp ( (9) INFORMATION FOR SEQ ID NO:8 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 7 (B) TYPE: Amino Acid (C) STRANDEDNESS: Not applicable (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: amino acid (iii) HYPOTHETICAL: no (iv) ANTI-SENSE:Not applicable (v) FRAGMENT TYPE: internal (vi) ORIGINAL SOURCE: Leuconostoc mesenteroides glucose 6-phosphate dehydrogenase (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME: Not applicable (x) PUBLICATION INFORMATION: None (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 8 Glu Asn Asp Phe Glu Asn Ala (10) INFORMATION FOR SEQ ID NO:9 (i) SEQENCE CHARACTERISTICS: (A) LENGTH: 6 (B) TYPE: Amino Acid (C) STRANDEDNESS: Not applicable (D) TOPOLOGY: Linear (ii) MOLECULE TYPE: amino acid (iii) HYPOTHETICAL: no (iv) ANTI-SENSE:Not applicable (v) FRAGMENT TYPE: internal (Vi) ORIGINAL SOURCE: Leuconostoc mesenteroides glucose 6-phosphate dehydrogenase (vii) IMMEDIATE SOURCE: Not applicable (viii) POSITION IN GENOME: Not applicable (x) PUBLICATION INFORMATION: None (Xi) SEQUENCE DESCRIPTION: SEQ ID NO: 9 sp Ala Trp Val Phe Trp TABLE 1 . mesenteroides codon usage for GlcβPD gene

Claims: What is Claimed is: 1. A method of producing Glucose-6-phosphate dehydrogenase from L. mesenteroides, comprising the steps of: isolating L. mesenteroides, genomic DNA containing the L. mesenteroides GlcβPD gene, preparing oligonucleotides complementary to the upstream and downstream DNA sequence of the L. mesenteroides GlcβPD gene, subjecting said genomic DNA to the polymerase chain reaction with said oligonucleotides to produce an amplified DNA containing GlcβPD gene, digesting said amplified DNA containing gene with Bam HI - Sph I restriction endonucleases to produce a restriction fragment, ligating said restriction fragment to a plasmid, introducing said plasmid into a suitable strain of E. coli, culturing said E. coli, isolating L. mesenteroides GlcβPD from said cultures of E. coli. 2. Glucose-6-phosρhate dehydrogenase, produced by the process of isolating . mesenteroides genomic DNA containing the L. mesenteroides GlcβPD gene, preparing oligonucleotides complementary to the upstream and downstream DNA sequence of the L. mesenteroides GlcβPD, subjecting said genomic DNA to the polymerase chain reaction with said oligonucleotides to produce an amplified DNA containing GlcβPD gene, digesting said amplified DNA containing gene with Bam HI - Sph I restriction endonucleases to produce a restriction fragment, ligating said restriction fragment to a plasmid, introducing said plasmid into a suitable strain of E. coli, culturing said E. coli, isolating L. Mesenteroides GlcβPD from said cultures of E. coli. 3. Oligonucleotide 3, having the sequence of SEQ ID NO: 4. 4. Oligonucleotide 4, having the sequence of SEQ ID NO: 5. 5. Oligonucleotide 5, having the sequence of SEQ ID NO: 6. 6. The method of claim 1 wherein said oligonucleotides are oligonucleotide 4 and oligonucleotide 5. 7. The product of claim 2 wherein said oligonucleotides are oligonucleotide 4 and oligonucleotide 5. 8. A DNA having the sequence of SEQ ID NO: 1. 9. A DNA comprising elements 211-1672 SEQ ID NO: 1,

Inventors: LEE WILLIAM THEODORE, LEVY HANS RICHARD, LEE, WILLIAM, THEODORE, LEVY, HANS, RICHARD
Applicants: UNIV SYRACUSE, SYRACUSE UNIVERSITY
Application year: 1991
Main classification: C12N9
IPC codes: C12N9, C12N15, C12R1