New DNA sequence

Abstract: A novel cholesterol oxidase having a high affinity for cholesterol as a substrate and a wide optimum action pH; and a process for producing said enzyme by culturing a microorganism which belongs to the genus Escherichia and carries a recombinant DNA incorporating therein a DNA originating in the strain by Brevibacterium sterolicum and indicated by the sequence number 1.

Description: Technical Field The present invention relates to a novel cholesterol oxidase (hereafter referred to as cholesterol oxidase II) which has the peptide sequence as defined in the Sequence Listing SEQ ID NO: 1 and the following physicochemical properties (a) - (i), and a process for producing said cholesterol oxidase II. Background Art Cholesterol oxidase is an enzyme which catalyzes the reaction of oxidizing cholesterol (5-cholesten-3-β-ol) as substrate into 4-cholesten-3-one and hydrogen peroxide. The enzyme is used in a clinical test for quantitative determination of cholesterol in blood, etc. It is known that cholesterol oxidase has been produced by a microorganism belonging to the genus Schizophyrum , Streptoverticillium, Brevibacterium or Streptomyces in an industrial scale. However, it has been pointed out that a known cholesterol oxidase used for quantitative determination of cholesterol in blood has a low substrate affinity. Hence, there is a problem in quantitative determination accuracy where a sample solution having a low cholesterol content is analyzed and where a diluted sample solution is assayed. It has been further pointed out that the working pH range for the activity of known enzymes is relatively narrow so that when pH of a sample is set in an acidic range, in order to avoid an influence by other components such as bilirubin, the enzyme activity is lowered. In addition, productivity of the aforementioned cholesterol oxidase-producing microorganisms is extremely low and multiple procedures for purification of enzymes are required to remove protein impurities. Therefore, it has been desired to develop a cholesterol oxidase having a high substrate affinity and a wide working pH range as well as a microorganism capable of producing cholesterol oxidase in high productivity without contamination with protein impurities. Disclosure of the Invention The inventors of the present invention have made extensive studies for a process for producing, at an industrially lower cost, cholesterol oxidase having a high purity, a high substrate affinity for cholesterol, and a wide working pH in an acidic range. As a result of extensive studies in cholesterol oxidases, it has now been found that cholesterol oxidase II having a high substrate affinity and a wide working pH in an acidic range can be produced in good yield, by culturing a microorganism which is constructed by the steps of: isolating, from a strain belonging to the genus Brevibacterium , a DNA fragment bearing genetic information involved in the production of a different isoenzyme in the substrate affinity, working pH range and isoelectric point from known cholesterol oxidase, inserting the DNA fragment into a vector DNA to prepare a recombinant DNA containing the DNA fragment, introducing the recombinant DNA into a microorganism belonging to the genus Escherichia . The present invention has thus been accomplished. The present invention provides a DNA encoding cholesterol oxidase II which has the nucleotide sequence as defined in the Sequence Listing by SEQ ID NO: 1, and a process for production of cholesterol oxidase II, which has the following physiochemical properties. (a) Activity It catalyzes the reaction of oxidizing cholesterol in the presence of oxygen to form hydrogen peroxide and 4-cholesten-3-one. (b) Isoelectric point: pH 4.7 (c) Substrate specificity: It acts on cholesterol, β-sitosterol, stigmasterol, pregnenolone, dehydroisoandrosterone and estradiol but does not act on vitamin D 3 , cholic acid, androsterone, cholesterol linoleate or lanosterol. (d) Working pH range and stable pH range: The working pH is in a range of 5.0 to 7.5. The enzyme is stable in a pH range of 5.3 to 7.5, when heated at 50°C for 60 minutes. (e) Optimum temperature: about 50°C (f) Conditions for inactivation by pH and temperature: The enzyme is inactivated at a pH of 10.0 or more or at a pH of 4.0 or less when heated at 50°C for an hour. The enzyme is also inactivated by about 83% when heated at a pH of 7.0 and a temperature of 60°C for an hour. (g) Inhibition and stabilization: The enzyme is inhibited by p -chloromercury benzenesulfonate, silver nitrate and o -hydroxyquinoline. Further in the presence of bovine serum albumin, resistance to heat and stability during storage are improved. (h) Michaelis' constant to cholesterol (Km value): 3.0 × 10 -5 M (i) Molecular weight: about 43,000 (gel filtration) about 60,000 (electrophoresis) 66,586 (DNA sequence) The present invention is described in detail below. Cholesterol oxidase II is an enzyme isolated from Brevibacterium sterolicum ATCC 21387 described in Japanese Published Examined Patent Application No. 1190/73. The strain has been known to be a cholesterol oxidaseproducing strain. Cholesterol oxidase II is an enzyme having properties different from those of a known cholesterol oxidase (hereafter referred to as cholesterol oxidase I) derived from ATCC 21387 strain. Comparison between Cholesterol oxidases II and I are given below. (1) Isoelectric point: Cholesterol oxidase II has an isoelectric point of pH 4.7, whereas an isoelectric point of cholesterol oxidase I is pH 8.9. (2) Substrate specificity: Substrate specificity of cholesterol oxidases I and II is shown in Table 1. Relative Activity (%) Substrate I II Cholesterol 100 100 Dehydroisoandrosterone 41.4 13.0 Pregnenolone 22.4 32.9 β-Sitosterol 19.7 82.0 Stigmasterol 10.0 64.4 Estradiol 0 3.2 Vitamin D 3 0 0 Cholic acid 0 0 Androsterone 0 0 Cholesterol linoleate 0 0 Lanosterol 0 0 (3) Working pH for activity: The working pH of cholesterol oxidase II is in a range of 5.0 to 7.5, whereas that of cholesterol oxidase I is in a range of 6.0 to 7.5. (4) Michaelis' constant to cholesterol (Km value): The constant of cholesterol oxidase II is 3.0 × 10 -5 M, whereas the constant of cholesterol oxidase I is 1.1 × 10 -3 M. (5) Influence of inhibitor: Relative activity is shown in Table 2, in the presence of an inhibitor at a concentration of 1 mM, when in the absence of the inhibitor, the activities of cholesterol oxidases I and II are regarded as 100. Relative Activity (%) Inhibitor II I p -Chloromercury benzenesulfonate 87.0 80.0 AgNO 3 1.0 0 o -Hydroxyquinoline 91.3 - (6) Molecular weight: From the analysis using TSK G3000SW manufactured by Toyo Soda Mfg. Co., Ltd., it is presumed that the molecular weight is 43,000 based on its elution pattern (gel filtration). From the analysis using SDS-PAGE, it is presumed that the molecular weight is 60,000 based on its mobility. The DNA sequence determination indicates that the molecular weight is 66,586. In the case of cholesterol oxidase I, the molecular weight is presumed to be 33,000 by analysis using Sephadex gel filtration carrier manufactured by Pharmacia Fine Chemicals, Inc., and is presumed to be 55,000 by analysis using SDS-PAGE. By isolating chromosomal DNA from a microorganism belonging to the species Brevibacterium sterolicum, shotgun-cloning a gene coding for cholesterol oxidase II in an appropriate host-vector system, and introducing a vector DNA containing the gene into a suitable Escherichia coli strain, cholesterol oxidase II-producing strain having a high expression activity can be constructed. Hereafter construction of the cholesterol oxidase II-producing strain is described. Shotgun-cloning of cholesterol oxidase II encoding gene isolated from a microorganism belonging to the genus Brevibacterium can be recognized by directly determining the expressed enzyme activity using Escherichia coli as a host. The direct determination of the expressed enzyme activity can be made, for example, by using cells of a transformant as direct enzyme source, or by the method which comprises lysing cells with lysozyme, etc. and determining the enzyme activity using the resulting permeable cell, or by the method which comprises incorporating cholesterol in a medium and observing the clear halo formation associated with oxidation of cholesterol by the enzyme activity leaked out of the cells in a trace amount. Chromosomal DNA containing the gene coding for cholesterol oxidase II is isolated from a microorganism belonging to the genus Brevibacterium in a conventional manner, for example, by the method described in Manual of Molecular Biology Experiment (R.F. Schleif, P.C. Wensink, translated by Masaya Kawakami and Tatsumi Yamasaki, published by Kodansha Scientific, 1983). Then, the chromosomal DNA obtained above is digested with appropriate restriction enzymes to prepare a DNA fragment containing cholesterol oxidase II encoding gene. The DNA fragment may be incorporated in a conventional manner into a vector DNA digested with appropriate restriction enzymes, by use of DNA ligase to prepare the recombinant DNA containing the cholesterol oxidase II encoding gene. As the vector DNA used herein, any plasmid can be used so long as it is autonomously replicable in Escherichia coli . Inter alia, pUC13, pPROK-C, etc. are preferably used. As examples of the restriction enzyme, Bam EI, Sau 3AI, etc. can be used. The cleavage site of Sau 3AI causes the extrusive end having the same structure as the cleavage site with Bam HI so that ligation for recombination is possible. Thus, the DNA fragment obtained by subjecting chromosomal DNA to restriction digestion with Sau 3AI can be ligated with the vector DNA digested with Bam HI. As DNA ligase, T4 DNA ligase derived from T4 phage-infected Escherichia coli can be advantageously used. Then, the recombinant DNA obtained by the method described above is introduced into Escherichia coli in a conventional manner, for example, by the method described in Molecular Cloning (T. Maniatis, E.F. Fritsch. J. Sambrook, Cold Spring Harbour Publishing Co., 1982). Selection of a transformant carrying the recombinant DNA containing cholesterol oxidase II-encoding gene is made as follows. That is, transformants are cultured in an LB solid medium containing 0.1% cholesterol, 0.1% Trion X-100 and 0.0025% ampicillin. Colonies around which a clear halo formation is formed are selected from the growing colonies. Then, the colonies are inoculated on a microtiter plate to assay the presence of cholesterol oxidase activity. An example of the thus obtained recombinant plasmids is pnH10. The transformant carrying the resulting plasmid pnH10, namely, Escherichia coli nH10, has been deposited under the Budapest Treaty with the Fermentation Research Institute of the Agency, Industrial Science Technology of Japan as Escherichia coli nH10 (FERM BP-2850) since April 5, 1990. The thus obtained cholesterol oxidase II-producing strain is cultured in a nutrient medium, whereby marked quantities of cholesterol oxidase II are accumulated in the culture. As the media for culturing the cholesterol oxidase II-producing strain, any of synthetic media and natural media containing carbon sources, nitrogen sources, inorganic compounds, etc. can be used. As the carbon source, there are used various carbohydrates such as lactic acid, glycerol and molasses. The preferred amount of the carbon sources used is approximately 5 to 70 g/l. As the nitrogen source, there are used ammonium sulfate, ammonium phosphate, ammonium carbonate, ammonium acetate, or nitrogen-containing organic compounds such as peptone, yeast extract, corn steep liquor, casein hydrolysate and meat extract. The amount of the nitrogen source is preferably about 5 to 20 g/l. As the inorganic compounds, there are used, for example, sodium chloride, potassium dihydrogenphosphate, dipotassium hydrogenphosphate, magnesium sulfate, magnesium chloride, etc. The preferred amount of the inorganic compounds used is approximately 0.05 to 5 g/l. Culturing is carried out under aerobic conditions such as shaking culture and agitation submerged culture. For the culturing, it is preferred to maintain a temperature of 30 to 37°C. In general, a period for the culturing is about 16 to 40 hours. For collecting cholesterol oxidase II from the culture after completion of the culturing, the cells are collected from the culture described above by means of centrifugation, etc. The obtained cells are homogenized by sonication, trituration using glass beads, disruption treatment with French press, etc. to extract the enzyme. The extract is treated in a conventional manner such as salting out with ammonium sulfate, chromatography using ion exchange resin, gel filtration and chromatography using hydroxyapatite adsorption resin to obtain purified cholesterol oxidase II. Cholesterol oxidase II accumulated outside the cells may be treated in the same manner as described above except for omitting the operation for cell homogenization. The physicochemical properties of the thus obtained cholesterol oxidase II are described in detail below. With respect to cholesterol oxidase II, the purified enzyme preparation obtained in Example 2 was used. I. Activity It catalyzes the reaction of oxidizing cholesterol in the presence of oxygen to form hydrogen peroxide and 4-cholesten-3-one. (a) Ascertainment of the formation of hydrogen peroxide Cholesterol is oxidized on cholesterol oxidase II in the presence of oxygen and then peroxidase, phenol and 4-aminoantipyrine are added to the enzyme system, whereby a quinoneimine pigment is formed in the reaction system. Reaction Composition: 3 mM cholesterol, 1.0% Triton X-100 aqueous solution 1.0 mℓ 50 mM sodium cholate aqueous solution 0.3 mℓ 0.5 M Na-K phosphate buffer (pH 6.0) 0.3 mℓ 42 mM phenol aqueous solution 0.5 mℓ 2.4 mM 4-aminoantipyrine aqueous solution 0.5 mℓ 2 mg/mℓ peroxidase (manufactured by Toyobo Ltd., specific activity 115 units per 1 mg of protein) 0.2 mℓ cholesterol oxidase II aqueous solution (0.5 unit) 0.2 mℓ The reagents given in Reaction Composition above were mixed with each other. While stirring the mixture at 37°C, the amount of produced hydrogen peroxide was determined by colorimetric determination of produced quinoneimine pigment. That is, when hydrogen peroxide produced in the reaction system was determined by the method as described in Clinical Chemistry, 20 , 470 (1974), it was recognized that 0.19 µmole of hydrogen peroxide was formed from 0.15 µmole of cholesterol. (b) Ascertainment of oxygen consumption In the presence of oxygen, cholesterol oxidase II acts on cholesterol and an amount of oxygen consumed is measured by Warburg's manometer. Reaction Composition: 3 mM cholesterol, 1.5% Triton X-100 aqueous solution 1.0 mℓ 50 mM sodium cholate aqueous solution 0.3 mℓ 0.5 M Na-K phosphate buffer (pH 6.0) 0.3 mℓ 42 mM phenol aqueous solution 0.5 mℓ 2.4 mM 4-aminoantipyrine aqueous solution 0.5 mℓ 2 mg/mℓ peroxidase (manufactured by Toyobo Ltd., specific activity 115 units per 1 mg of protein) 0.2 mℓ cholesterol oxidase II aqueous solution (0.5 unit) 0.2 mℓ The reagents given in the reaction composition above were mixed with each other. While stirring the mixture at 37°C, a difference in gaseous pressure between the inside and outside of a reactor caused by consumption of oxygen was compensated for by shift of the manometer in a cylinder connected with the reactor at one end and connected with the outer air at another end. In this case, an amount of the manometer liquid shifted was determined. An amount of the manometer liquid shifted was converted into an amount of ideal gas in the standard state by the following equation (Umbreit Burris Stauffer, Manometric and Biochemical Techniques, 5th edition, Chapter 5). V = 273 × (P-Pw) × ΔVg 760 K × T wherein symbols denote the following. V represents an amount of ideal gas consumed in the standard state (unit: µℓ), P represents atmospheric pressure when measured (unit: mmHg), Pw represents vapor pressure at a reaction temperature when measured (unit: mmHG), T represents a reaction temperature when measured (unit: °K), ΔVg represents an amount of manometer liquid shifted (unit: µℓ), and K represents container constant (unit: m 2 ) In the standard state, 1 µℓ of gas corresponds to 0.0446 µmole.The results of measurement indicate that when 1.5 pmole of cholesterol was oxidized on cholesterol oxidase II, 1.43 µmole of oxygen was consumed. (c) Ascertainment of the formation of 4-cholesten-3-one In the presence of oxygen, cholesterol oxidase II acted on cholesterol, and the reaction product was identified to be 4-cholesten-3-one as follows. Procedures for identification: 1) Reaction solution 50 mM cholesterol ethanol solution 6.0 mℓ 50 mM sodium cholate aqueous solution 5.0 mℓ Triton X-100 1.5 mℓ 0.5 M Na-K phosphate buffer (pH 7.5) 5.0 mℓ cholesterol oxidase II aqueous solution (19 units) 13.0 mℓ Water 19.5 mℓ 2) Reaction procedures The reaction solution described above was subjected to reaction at 37°C with shaking. Thirty minutes, 3 hours and 16 hours after, 50 µℓ each of the reaction solution was collected and mixed with 50 µℓ of hexane. Thereafter 5 µℓ of the resultant supernatant of the mixture was collected and provided for the subsequent procedure (3) for identification. 3) Identification As the result of thin layer chromatography (hereafter referred to as TLC) shown below, the product in the reaction solution was identified to be 4-cholesten-3-one. The thin layer plate used was silica gel G-60F-254 (trademark, manufactured by E. Merck A.G.) and a developing solvent is the solvent system [hexane: ethyl acetate = 3:2 (volume ratio)]. After development, the plate was observed in terms of fluorescent emission under exposure to UV rays (wavelength of 254 nm) followed by phosphorus molybdenate reaction. It was thus recognized that Rf value of the reaction product coincides with that of the authentic compound. The results are shown in Table 3. Identification of the Reaction Product by TLC Color Development Sample Rf value Exposure to UV ray (wavelength 254 nm) Authentic 4-cholesten-3-one 0.808 Reaction product 0.808 Phosphorus molybdenate reagent Authentic 4-cholesten-3-one 0.808 Reaction product 0.808 (Note) phosphorus molybdenate reagent: Organic compounds containing carbons react with the reagent to give a black spot. As shown in Table 3, the consistency between the Rf values of the product and the authentic 4-cholesten-3-one sample indicated that they were identical. That is, the product obtained by subjecting cholesterol to the action of cholesterol oxidase II in the presence of oxygen was confirmed to be 4-cholesten-3-one. (d) Based on the amount of hydrogen peroxide formed, the amount of oxygen consumed and identification of the reaction product as described in (a), (b) and (c), it is recognized that the enzyme of the present invention acts on specifically cholesterol, that cholesterol was oxidized into hydrogen peroxide and 4-cholesten-3-one; that is, this enzyme has a cholesterol oxidase activity. wherein R represents II. Working pH range and stable pH range The working pH for the activity is in a range of 5.0 to 7.5. The working pH range was determined by assaying the activity at each pH (phosphate buffer, Tris-HCl buffer, sodium acetate buffer) after the reaction at 37°C for 5 minutes. In this case, pH ranges were also determined with respect to cholesterol oxidase I. The results are shown in Fig. 1. As shown in Fig. 1, the working pH range of cholesterol oxidase II was obviously different from that of cholesterol oxidase I. The stable pH range is 5.3 to 7.5. The pH range is determined by treating the enzyme at 50°C for 60 minutes at each pH (phosphate buffer, Tris-HCl buffer, sodium acetate buffer) and then assaying the residual activity. The results are shown in Fig. 2. III. Method for determination of titer The amount of enzyme which catalyzes the reaction of decomposing 1 µmole of cholesterol at 37°C for one minute in the presence of oxygen is defined as one unit. The titer is determined as follows. With shaking, the enzyme acts on cholesterol and 4-aminoantipyrine and phenol are reacted with the formed hydrogen peroxide in the presence of peroxidase to form quinoneimine pigment. Absorption of the thus formed quinoneimine pigment in the visible region is measured to determine the amount of hydrogen peroxide generated. Thus, the titer of the enzyme is determined. Hereafter specific activity is defined as activity per 1 mg of protein (unit/mg). Furthermore, an amount of enzyme protein is determined by absorbance at 280 nm (1 mg/mℓ when absorbance is 1). (a) Principle The enzyme activity is determined by reacting hydrogen peroxide generated by the enzyme with 4-aminoantipyrine and phenol in the presence of peroxidase and quantitatively determining the formed quinoneimine pigment. The reaction is shown by the following equations (1) and (2). wherein R represents (b) Procedure In a test tube, there are charged 1.0 ml of 3 mM cholesterol solution (which is prepared by adding 6 mℓ of 50 mM cholesterol ethanol solution to 94 mℓ of 1.05% Triton X-100 solution with stirring, heating the mixture for 10 minutes on a water bath, cooling the mixture in water, adding distilled water to the mixture until the total volume is 100 mℓ; and is not allowed to be used 30 minutes or longer after preparation), 0.3 mℓ of 50 mM sodium bilate solution, 0.3 mℓ of 0.5 mM potassium-sodium phosphate buffer (pH 6.6), 0.5 mℓ of 42 mM phenol, 0.5 mℓ of 2.4 mM 4-aminoantipyrine and 0.2 mℓ of 115 units/mℓ horseradish-derived peroxidase. The mixture is agitated. After maintaining at 37°C for 3 mintues, 0.2 mℓ of an enzyme solution is added to the mixture. With shaking, the reaction is carried out at 37°C for 5 to 10 minutes. Then, absorbance is measured at 500 nm (OD 500 nm). (c) Calculation of titer One unit of cholesterol oxidase II corresponds to an enzyme activity which decomposes 1 µmole of cholesterol at 37°C for 1 minute. On the other hand, it is reported that absorption coefficient of 1 mM quinoneimine is 5.33 [Clinical Chemistry, 20 , 470 (1974)]. Therefore, titer (A) per 1 mℓ of enzyme solution to be determined is calculated according to equation (2), by defining OD 500 nm for 3 mℓ of the reaction solution as described in (1) below. (1) A difference obtained by subtracting [(OD 500 nm of reagent blank) - (OD 500 nm of the solution from which substrate has been removed from the reagent blank)] from [(OD 500 nm of the reaction solution containing both enzyme and substrate) - (OD 500 nm of the reaction solution from which substrate has been removed from the reaction solution)] is defined to be ΔE. (2) Titer of enzyme solution A (unit/mℓ) = ΔE ÷ 5.33 ÷ time (min) × 3 × dilution rate Note 1: Reagent blank means a solution obtained by removing enzyme solution from the reaction solution. IV. Optimum temperature The optimum temperature at a pH of 6.6 for 3 minutes of the reaction time was examined. The results are shown in Fig. 3. The optimum temperature is at about 50°C. V. Inactivation by pH and temperature Cholesterol oxidase II is inactivated at pH of 8.5 or more. After heat treatment at pH of 7.0 for 60 minutes in 0.05 M phosphate buffer, the residual activity was determined. As shown in Fig. 4, the results reveal that the enzyme is inactivated by about 10% at 50°C and by about 83% at 60°C. VI. Substrate affinity Michaelis' constant (Km value) of cholesterol oxidase II to cholesterol substrate was 3.0 × 10 -5 M, whereas that of cholesterol oxidase I was 1.1 × 10 -3 M. Reaction rates of the two enzymes were measured in various concentrations of cholesterol. The results are shown in Fig. 5. Km value of cholesterol oxidase II was about the one-hundredth of that of cholesterol oxidase I. It is indicated that affinity of cholesterol oxidase II to cholesterol is extremely high and more suited for quantitative determination of cholesterol. In addition, as is illustrated in Fig. 5, the saturation curve obtained by use of cholesterol oxidase II is a type of so-called Michaelis-Menten. The substrate activation phenomenon was not observed, while it was observed with cholesterol oxidase I. It is concluded that cholesterol oxidase II has superior reactivity to cholesterol oxidase I in quantitative determination of serum cholesterol at a low concentration.Michealis' constant was determined from the Line weaver-Burk plot [refer to J. Am. Chem. Soc., 56 , 658 (1934)]. VII. Determination of the amino acid sequence and nucleotide sequence of cholesterol oxidase II Cholesterol oxidase II may be divided into 2 subunits, using reverse phase high performance liquid chromatography. Each subunit is digested with a protease, for example trypsin, and the digested subunit is further fractionated using high performance liquid chromatography, to obtain protease-digested fragments. The amino acid sequence of each digested fragment may be analyzed according to the conventional method, with the amino acid sequencer.The nucleotide sequence of cholesterol oxidase II is determined by the method of Sanger [refer to F. Sanger, Science, 214, 1205 (1981)] using Sequenase Ver 2.0. Brief Description of the Drawings Fig. 1 shows relative activities of cholesterol oxidases I and II at respective pH values after treated at 37°C for 5 minutes. In the figure, ○ denotes the activity of cholesterol oxidase II and  denotes the activity of cholesterol oxidase I. Fig. 2 shows pH stability of cholesterol oxidase II obtained in Example 2. Fig. 3 shows the working temperature of cholesterol oxidase II obtained in Example 2. Fig. 4 shows thermostability of cholesterol oxidase II obtained in Example 2. In the figure, ○ denotes the thermostability at 50°C and  denotes the thermostability at 60°C. Fig. 5 shows substrate saturation curve of cholesterol oxidases I and II on the purified cholesterol. Fig. 5 (A) and Fig. 5 (B) denote the results obtained by use of cholesterol oxidase II and cholesterol oxidase I, respectively. Fig. 6 shows the cleavage map for restriction enzymes of recombinant plasmid pnH10. Fig. 7 shows elution pattern in ion exchange chromatography of cholesterol oxidase II using DEAE-Cellulofine. In the figure, ○ denotes protein concentration (OD 280 nm, mg/mℓ) of the eluate and  denotes enzyme activity (U/mℓ) of the eluate. Fig. 8 shows elution pattern in gel filtration of cholesterol oxidase II using Superose prepl2 HR16/50. In the figure, ○ denotes protein concentration (OD 280 nm, mg/mℓ) of the eluate and  denotes enzyme activity (U/mℓ) of the eluate. Best Mode for Carrying Out the Invention Example 1 : Cloning of cholesterol oxidase II-encoding gene 1) Preparation of chromosomal DNA containing cholesterol oxidase II-encoding gene Brevibacterium sterolicum ATCC 21387 strain was cultured with shaking at 30°C for 3 days in 30 mℓ of an LB medium (10 g/ℓ Bactotrypton, 8 g/ℓ Bacto-yeast extract (both were manufactured by Difco Co.), 5 g/ℓ NaCl (pH 7.2)]. The resulting cells were collected by centrifugation at 4°C for 10 minutes at 10,000 rpm using a cooling centrifuging machine (RPR20-2 rotor) manufactured by Hitachi Ltd. After washing the cells with 10.3% sucrose solution, the solution was again centrifuged to collect the cells. The whole chromosomal DNA was extracted by the method described in Current Topics in Microbiology and Immunology, 96 (1982) to give about 1 mg of chromosomal DNA. 2) Incorporation of chromosomal DNA fragment into vector DNA 72 µg of the whole chromosomal DNA obtained in 1) above was taken and dissolved in 1,000 µℓ of M buffer [10 mM Tris-HCl buffer (pH 7.5), 10 mM MgCl 2 , 50 mM NaCl, 1 mM DTT (dithiothreitol)]. 3.6 units of restriction endonuclease Sau3AI (manufactured by Takara Shuzo Co., Ltd.) was added to the solution to effect restriction digestion at 37°C for 30 minutes. Then, the fractionation was carried out by 10 to 40% sucrose density gradient centrifugation according to the method described in Molecular Cloning supra . Centrifugation was performed at 20°C for 16 hours at 26,000 rpm using an ultracentrifuging machine (SRP 28 rotor) manufactured by Hitachi Ltd. The fractionation was carried out again and a part of each fraction was subjected to agarose gel electrophoresis according to the method described in Molecular Cloning supra to determine the size of DNA fragments. The fractions containing the DNA fragments of 3 to 6 kb were collected followed by ethanol precipitation. Thereafter, the precipitates were dissolved in 60 µℓ of a ligation buffer [66 mM Tris-HCl buffer (pH 7.6), 5 mM MgCl 2 , 5 mM DTT, 1 mM ATP] to give the chromosomal DNA solution containing about 5 µg of the DNA fragment. Furthermore, 10 µg of pPROK-C (manufactured by Clone Tech) used as a vector was dissolved in 300 µℓ of M buffer and 40 units of restriction endonuclease Bam HI (manufactured by Takara Shuzo Co., Ltd.) was added to the solution. The reaction was carried out at 37°C for 3 hours to fully digest the vector. Then, 20 µℓ of 1M Tris-HCl buffer (pH 8.6) and 4 units of calf small intestine-derived alkaline phosphatase were added. The reaction was carried out at 37°C for an hour for dephosphorylation. Further, by heating at 65°C for 10 minutes, the enzyme was inactivated. After ethanol precipitation, the precipitates were dissolved in 80 µℓ of ligation buffer solution. Subsequently, 32 µℓ of a solution of chromosomal DNA digested with Sau 3AI was mixed with 5 µℓ of a solution of pPROK-C digested with Bam HI. The ligation buffer was added until the whole volume was 75 µℓ, and 2 units of T4 DNA ligase (manufactured by Takara Shuzo Co., Ltd.) was added to the mixture. Ligation was performed at 16°C for 16 hours to give various recombinant DNA mixtures. 3) Transformation of Escherichia coli With the recombinant DNA mixtures obtained in 2) above, Escherichia coli was transformed. The DNA-sensitive strain used for transformation was prepared by the method of Hanahan et al. described in Journal of Molecular Biology, 166 , 577. Escherichia coli MM294 strain was cultured in LB medium overnight and 0.2 mℓ of the obtained culture was inoculated on 20 mℓ of SOB medium [20 g/ℓ Bactotrypton, 0.50 g/ℓ Bacto-yeast extract (both were manufactured by Difco Co.), 10 mM NaCl, 2.5 mM KCl, 10 mM MgCl 2 , 10 mM MgSO 4 (pH 7.0)]. After culturing for 3 hours, the culture was transferred to a test tube of Falcon 2070 and settled in ice for 15 minutes. By centrifugation at 4°C, the cells were collected. The cells were suspended in 7 mℓ of TFB [10 mM Good MES buffer (pH 6.20), 100 mM RbCl, 45 mM MnCl 2 , 10 mM CaCl 2 , 3 mM hexamine cobalt chloride] and the suspension was settled in ice for 15 minutes. The cells were collected by centrifugation and again suspended in 1.6 mℓ of TFB. Then, 56 µℓ of dimethylsulfoxide was added to the resulting suspension. After gently stirring in ice for 5 minutes, 56 µℓ of β-mercaptoethanol was added and the mixture was gently stirred in ice for 10 minutes. Again 56 µℓ of dimethylsulfoxide was added and the mixture was gently stirred in ice for 5 minutes. The thus obtained cells were used for transformation as the DNA-sensitive strain. After 210 µℓ of the resulting solution containing DNA-sensitive strains was charged in Falcon 2059 test tube, 10 µℓ of the recombinant DNA mixtures prepared in 2) was added thereto. After gently stirring, the mixture was settled in ice for 30 minutes. The mixture was heated for 90 seconds in a thermostat of 42°C, then transferred into ice, and kept for 2 minutes. To the mixture was added 800 µℓ of SOC medium (SOB medium supplemented with 20 mM glucose). The resulting culture was inoculated on LB solid medium containing 0.1% cholesterol, 0.1% Triton X-100 and 0.0025% ampicillin followed by culturing at 37°C overnight. The colonies grown were obtained as transformants. 4) Selection of transformants carrying the recombinant DNA containing cholesterol oxidase II encoding gene The recombinant DNA containing cholesterol oxidase II-encoding gene was isolated from the transformants obtained in 3) described above by the following method. The colonies which grew on the LB solid medium and around which a clear halo formation was formed were selected. The colonies were inoculated on a microtiter plate to assay the presence or absence of cholesterol oxidase activity. The transformants having the cholesterol oxidase activity were inoculated on LB medium containing in 0.005% of ampicillin followed by culturing at 30°C overnight. After completion of the culturing, the cells were collected. The obtained cells were suspended in 10 mℓ of 0.05 M phosphate buffer (pH 7.0) and then disrupted for 10 minutes by ultrasonic cell disrupter (Cell Disrupter, Model 200, manufactured by Branson Co., output: 40%). After centrifugation, cholesterol oxidase activity of the resulting supernatant was determined by the method described above. Thus, Escherichia coli nH10 having a high cholesterol oxidase activity was obtained. From the transformant nH10, a recombinant plasmid DNA carried by the transformant was recovered to give pnH10. pnH10 was cleaved with Hin dIII, Pst I, Sal I, Xho I, Kpn I, Apa I, Bam HI, Mlu I, Eco RI, Sma I and Sca I and the structure of pnH10 was recognized by agarose gel electrophoresis. pnH10 had such a structure that DNA fragment of about 3.0 kb had been incorporated into pPROK-C (cf. Fig. 6). 5) Analysis of cloned cholesterol oxidase II encoding gene It was ascertained by the following method that pnH10 was a recombinant plasmid containing a gene coding for isoenzyme different from known cholesterol oxidase I produced by Brevibacterium sterolicum ATCC 21387. That is, recombinant plasmid pnH10 was prepared from nH10 strain according to the method described in Molecular Coloning (T. Maniatis, E.F. Fritsch, J. Sambrook, Cold Spring Harbour Publishing Co., 1982). After agarose gel electrophoresis, the gel containing pnH10 was dipped in a solution containing 1.5 M NaCl and 0.5 M NaOH at room temperature for 30 minutes to denature double stranded DNA. By closely contacting the gel with a nylon filter, a solution containing 1.5 M NaCl and 0.25M NaOH was permeated through the back surface of the filter, whereby the denatured DNA was transferred and fixed on the filter. The thus prepared filter was reacted at 45°C for 16 hours with hybridization buffer (53.0 g/ℓ NaCl, 26.5 g/ℓ sodium succinate, 10 mM EDTA, 5-fold Denhardt solution, 0.5% SDS, 0.1 mg/mℓ thermally denatured bovine thymus-derived DNA, pH 7.0) containing DNA probe obtained by labeling synthetic single DNA having DNA nucleotide sequence deduced from the partial amino acid sequence of cholesterol oxidase I produced by Brevibacterium sterolicum ATCC 21387, namely, Probe No. 1 as defined in the Sequence Listing by SEQ ID NO: 2 (the 6th base in any one of T and C; the 9th base is any one of T and C; the 12th base is any one of A, G and T; the 15th base is any one of A and G; which becomes a mixture of 24 synthetic DNAs in combination); or Probe No. 2 as defined in the Sequence listing by SEQ ID NO: 3 (the 3rd base is any one of A and G; the 9th base is any one of A and G; the 12th base is any one of C and T; the 15th base is any one of T, A and G; which becomes a mixture of 24 synthetic DNAs in combination); with γ- 32 P-ATP. Then, the solution containing the probe was discarded and the reaction mixture was thoroughly washed with 3-fold SSC at 65°C. The filter was closely contacted with X ray film, which was exposed at -70°C for one day. By so-called autoradiography, the reactivity with pnH10 was examined. Probe No. 1 corresponds to the amino acid partial sequence of the polypeptide chain at the center of cholesterol oxidase I and probe No. 2 corresponds to the amino acid sequence at the C-terminal. The analyses of autoradiography indicate that pnH10 did not react with Probe No. 1 and No. 2, at all. The results reveal that the cholesterol oxidase II-encoding gene contained in plasmid pnH10 is different from the cholesterol oxidase I-encoding gene. Example 2 Escherichia coli nH10 (FERM BP-2850) was inoculated on 3 mℓ of a seed medium (pH 7.2 prior to sterilization) obtained by supplementing 0.005% of ampicillin to LB medium and cultured with shaking at 30°C for 18 hours. Three milliliters of the seed culture was put into each of five 2e-Erlenmeyer's flasks provided with baffles and containing 500 mℓ of the medium having the same components as the seed medium described above. Shaking culture was carried out at 30°C for 16 hours. After culturing, the obtained culture was centrifuged at 10,000 × g for 20 minutes with a cooling centrifuging machine to give about 18.6g (wet cell weight) of the cells. To the obtained cells were added 186 mℓ of 0.01 M phosphate buffer (pH 7.0, hereafter referred to as Buffer) to suspend the cells. Ultrasonication was performed for 30 minutes using an ultrasonication homogenizer (cell disrupter, Model 200, manufactured by Branson Co.; output of 75%, pulse retention time of 70%, mounted with a flat chip). After sonication, the disrupted mixture was centrifuged at 20,000 × g for 15 minutes with a cooling centrifuging machine and the supernatant was obtained as the cell-free extract. Solid ammonium sulfate was added to 194 mℓ of the obtained cell-free extract to 60% saturation. While keeping pH at 7 with 1 N NaOH solution, the mixture was gently stirred. After ammonium sulfate was completely dissolved, stirring was continued for further 30 minutes. Then, the solution was centrifuged at 20,000 × g for 15 minutes with a cooling centrifuging machine to give the supernatant. The obtained supernatant was dialyzed in a cellophane tube as a dialysis membrane for 12 hours per liter of Buffer. Thereafter Buffer was exchanged and dialysis was performed for further 12 hours to effect desalting. After the dialysis, 98.5 mℓ of the crude enzyme solution was passed through a column (7.5 × 15 cm) of DEAE-Cellulofine (manufactured by Biochemical Industry Co., Ltd.), which had been previously equilibrated with Buffer. By washing with 3 liters of Buffer at a flow rate of 480 mℓ/hr, unabsorbed protein was washed out. Next, NaCl concentration was changed linearly from 0 to 0.5 M to elute the enzyme with density gradient. Among the eluted fractions, the fraction having a specific activity of 10 units/mg or more was collected. Elution pattern is shown in Fig. 7. The obtained active fraction was concentrated by adding ammonium sulfate to 60% saturation. The formed precipitates were dissolved in Buffer and the solution was dialyzed as described above to effect desalting. The solution was further concentrated to about 2 mℓ by ultrafiltration. The concentrate was passed through a column (1.3 × 50 cm) of Superose prep12 HR16/50 (manufactured by Pharamacia Fine Chemicals), which had been previously equilibrated with 0.05 M phosphate buffer (pH 7.0) supplemented with 0.3 M NaCl and connected with 880PU pump (manufactured by Japan Spectroscopic Co., Ltd.) to perform elution at a flow rate of 30 ml/hr. Among the eluted fractions, the fractions having a specific activity of 15 units/mg or more were collected and dialyzed against 1 liter of Buffer. Elution pattern is shown in Fig. 8. The obtained active fraction was passed through a column (3.2 × 4.0 cm) of hydroxyappatite (manufactured by Biochemical Industry Co., Ltd.) which had been previously equilibrated with Buffer. By washing with Buffer at a flow rate of 100 mℓ/hr, the activity was all recovered in the washing liquid. The washing liquid was concentrated by ultrafiltration and the concentrate was made the purified enzyme preparation. The foregoing steps for purification are summarized in Table 4. Step Total activity (U) Total Protein (mg) Specific Activity (U/mg) Yield (%) Cell-free extract 1462 6940 0.21 100 Fraction with ammonium sulfate (0 - 60%) 2368 5990 0.40 162 DEAE-Cellulofine 844 57 14.8 57.7 Superose prep12 740 39 19.1 51.0 Hydroxyapatite 404 20 20.4 28.0 Further in order to assay the purity of the purified enzyme preparation, the sample in the non-denatured state as obtained above was applied to polyacrylamide gel electrophoresis. The assay was carried out according to the method of Davis et al. [B.J. Davis et al., Annals of New York Academy of Science, 121 , 404 (1964)]. The results reveal that the purified enzyme preparation was homogeneous. Industrial Applicability According to the present invention, a novel cholesterol oxidase is provided at an industrially lower cost. The novel cholesterol oxidase is characterized by its higher sensitivity and its quantitative accuracy in comparison with known cholesterol oxidase, in serum cholesterol measurements where the cholesterol concentration in the test sample is low due to repeated dilution procedures, and where the pH be lowered to around 6 during the measurement in order to avoid the influence of bilirubin and other interfering substances. Sequence Listing SEQ ID NO : 1 SEQUENCE LENGTH: 1845 base pairs SEQUENCE TYPE: nucleic acid STRANDEDNESS: double TOPOLOGY: linear MOLECULE TYPE: Genomic DNA ORIGINAL SOURCE ORGANISM: Brevibacterium sterolicum STRAIN:ATCC 21387 SEQ ID NO : 2 SEQUENCE LENGTH: 17 base pairs SEQUENCE TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear MOLECULE TYPE: Other nucleic acid Synthetic DNA HYPOTHETICAL: YES ANTI-SENSE: YES FEATURE: OTHER INFORMATION: The synthetic DNA probe corresponding to the middle region of the known cholesterol oxidase I-encoding DNA. SEQ ID NO : 3 SEQUENCE LENGTH: 17 base pairs SEQUENCE TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear MOLECULE TYPE: Other nucleic acid Synthetic DNA HYPOTHETICAL: YES ANTI-SENSE: YES FEATURE: OTHER INFORMATION: The synthetic DNA probe corresponding to the C-terminal region of the known cholesterol oxidase I-encoding DNA.

Claims: Claims for the following Contracting States : AT, BE, CH, DE, DK, FR, GB, IT, LI, LU, NL, SE A DNA defined in the Sequence Listing by SEQ ID NO : 1. A DNA according to claim 1, wherein the DNA is derived from Brevibacterium sterolicum. A recombinant plasmid DNA comprising the DNA as defined in the Sequence Listing by SEQ ID NO: 1. A process for producing cholesterol oxidase which comprises culturing in a medium a microorganism belonging to the genus Escherichia and carrying a recombinant plasmid DNA according to claim 3. Claims for the following Contracting States : ES, GR A process for producing a DNA defined in the Sequence Listing by SEQ ID NO: 1 comprising transforming a bacterial culture with the DNA A process according to claim 1, wherein the DNA is derived from Brevibacterium sterolicum. A method for producing a recombinant plasmid DNA comprising a DNA defined in the sequence listing by SEQ ID NO: 1 comprising the step of ligating a DNA defined in the Sequence Listing by SEQ ID NO: 1 into a plasmid vector. A process for producing cholesterol oxidase which comprises culturing in a medium a microorganism belonging to the genus Escherichia and carrying a recombinant plasmid DNA comprising a DNA defined in the Sequence Listing by SEQ ID NO: 1.

Inventors: FUJISHIRO KINYA, UWAJIMA TAKAYUKI, FUJISHIRO, KINYA, UWAJIMA, TAKAYUKI
Applicants: KYOWA HAKKO KOGYO KK, KYOWA HAKKO KOGYO CO., LTD.
Application year: 1991
Main classification: C12N9
IPC codes: C12R1, C12Q1, C12N15, C12N9, C12N1