DIAGNOSTIC METHOD

Abstract: Disclosed is a method useful in the diagnosis of HIV. The method involves the use of an immunochemical reagent containing one or more antibodies. Such a method would typically involve: obtaining blood from a subject suspected of suffering from HIV; contacting such an immunochemical reagent with the blood; and detecting the presence of immune complexes formed between the antibodies and any peptides reactive therewith present on the cell's surface.

Description: Diagnostic Method. Technical Field. This invention relates to diagnos¬ tic methods useful in the diagnosis of HIV infection. Background Art: Acguired immune deficiency syndrome ("AIDS") is a disease thought most likely to be caused by the human immunodeficiency virus ("HIV") . The main tar¬ gets of HIV are two different cells, the T4 lymphocyte and the macrophage. Once infected the T4 lymphocyte popula¬ tion generally begins to decline. Unlike the T4 lympho¬ cytes, the macrophage is not killed by HIV infection but may actually serve as a reservoir for the virus. Gallo & Montagneir "AIDS in 1988", Scientific American , p. 25 (Oct. 1988). The early diagnosis of persons suffering from HIV infection generally involves using diagnostic tests to determine whether or not a person has antibodies to HIV. Early diagnosis is especially important in HIV infection as it enables the patient to receive optimal medical care from the earliest moments of the disease and to check fur¬ ther spread of the contagion. Redfield & Burke "HIV In¬ fection: The Clinical Picture", Scientific American, p. 70. European Patent application 219,368 A (corresponding to U. S. Patent Application Serial No. 07/298,791) dis¬ closes certain monoclonal antibodies directed against pro¬ teins which form constituent parts of the "prosome". Pro- somes are cellular particles described in Schmid et al "The prosome: an ubiquitous morphologically distinct RNP particle associated with repressed mRNPs and containing specific ScRNA and a characteristic set of proteins," The EMBO Journal, 3(1), 29-34 (1984). The prosome has been also variously called the "proteasome" or "mcp" (multicatalytic protease). European Patent application 0 345 750 A2 discloses a "polyfunctional protease", and antibodies thereto. The polyfunctional protease described in this application may be the prosome. Since early 1990, mouse monoclonal antibodies against prosomal proteins have been commercially available from Organon Teknika nv of Turnhout, Belgium. The commercially available monoclonal antibodies have been ones directed against prosomal proteins p23K, p25K, p27K, p29K (p28K, p33K), p30/33K, and p31K and the anti-p21K ("prosome-like particle"). These antibodies are more thoroughly described in Research Reagent News, (Jan. 1990) available from Organon Teknika nv. In EP 219,368 Al, it is also disclosed that prosomes may be involved in many physiological processes related to the differentiation of cells and organisms, communication between cells, and to autoimmune disease. Also disclosed is that monoclonal antibodies directed against prosomes can be useful in the diagnosis of, for example, cancer. In Research Reagent News. disclosed uses for the monoclonal antibodies against the prosomal proteins include the study of the molecular biology of prosomes, the distribution of specific types of prosomes in normal and pathological cells and tissues, messenger and other ribonucleoproteins. No where is it described or suggested that any of these anti-prosomal proteins monoclonal antibodies might have any possible usefulness in the diagnosis of infec- tious diseases such as AIDS or HIV infection. Disclosure of the Invention. It has now been found that persons infected with HIV have cells (e.g. T4 and T8 lymphocytes as well as B4 cells) with different surface antigens than cells of per¬ sons not infected with the virus. Surprisingly, the pres¬ ence of these surface antigens on the particular cells can be detected with certain labelled anti-prosomal protein monoclonal antibodies (i.e. monoclonal antibodies directed against prosomal proteins p23K, p25K, p27K, p29K (p28K, p33K), p30/33K, and p31K as well as monoclonal antibodies against p21K of the prosome-like particle). The invention therefore includes a method of diag¬ nosing HIV infection using these anti-prosomal protein and anti-prosome-like particle monoclonal antibodies, no mat¬ ter what the source, in the diagnosis of HIV infection. The method can be used to determine whether T4 cells have been infected even before they are killed by HIV, thus enabling the method to be used as an early diagnostic tool for the diagnosis of HIV infection. The method typically involves: obtaining body fluid containing cells capable of infection with HIV (e.g. blood) from a subject; separating, isolating or somehow identifying the particular cells in question present in the fluid; contacting the thus identified or isolated cells with an immunochemical agent containing one or more of the described monoclonal antibodies; and detecting the presence and relative amount of immune complexes formed between the cells and the monoclonal antibodies reactive therewith present in the blood. These results once obtained can be compared with a "norm" derived from a person not infected with HIV. Monoclonal antibodies directed against the anti-pro¬ somal proteins p27K and p33K can be raised by using cer¬ tain polypeptides or fragments or derivatives thereof. These polypeptides have generally all or part of the pri- mary structural conformation of the polypeptides shown in SEQ ID NO:l or SEQ ID NO:3 and may be produced by the pro- caryotic or eucaryotic expression of an exogenous DNA source. The invention therefore also includes the DNA sequence for use in securing expression in a procaryotic or eucaryotic host cell of a peptide product having at least part of the primary structure of the polypeptide depicted in SEQ ID NO:l or SEQ ID NO:3. Generally such a DNA sequence will be selected from the group consisting of the DNA sequence set out in SEQ ID NO:l or SEQ ID NO:3 or their complementary strands; DNA sequences which hybridize under stringent conditions to the protein coding regions of these DNA sequences or fragments thereof; and DNA sequences which, but for the degeneracy of the genetic code, would hybridize to those DNA sequences. The invention thus includes the procaryotic or eucaryotic host cell transformed or transfected with such a DNA sequence, and the biologically functional circular plasmid or other DNA vector including such a DNA sequence. The invention also includes the use of antibodies directed against prosomal proteins to analyze surface antigens present on a cell's surface for use, in example, phenotyping the cell. For this aspect of the invention the profiles presented in FIGs. 1 - 8 are used to identify an unknown white blood cell. Brief Description of the Figures FIG. 1 is a graph depicting the percentage of T4 lym¬ phocytes in blood reacting with various labelled anti-pro¬ somal protein monoclonal antibodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 2 is a graph depicting the number of T4 lympho¬ cytes per cubic millimeter of subject blood reacting with various labelled anti-prosomal protein monoclonal anti¬ bodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 3 is a graph depicting the percentage of natural killer cells ("NK") in blood reacting with various labelled anti-prosomal protein monoclonal antibodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 4 is a graph depicting the number of NK per mm 3 of subject blood reacting with various labelled anti-pro¬ somal protein monoclonal antibodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 5 is a graph depicting the percentage of T3 cells in blood reacting with various labelled anti-proso¬ mal protein monoclonal antibodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 6 is a graph depicting the number of T3 cells per mm 3 of subject blood reacting with various labelled anti-prosomal protein monoclonal antibodies in both non- HIV infected ("temoins") and HIV infected subjects. FIG. 7 is a graph depicting the percentage of T8 cells in blood reacting with various labelled anti-proso- mal protein monoclonal antibodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 8 is a graph depicting the percentage of B4 cells in blood reacting with various labelled anti-proso¬ mal protein monoclonal antibodies in both non-HIV infected ("temoins") and HIV infected subjects. FIG. 9 depicts the cDNA encoding a protein of the instant invention, and the amino acid sequence of that protein (the human p27K prosomal protein). FIG. 10 depicts the cDNA encoding another protein of the instant invention, and the amino acid sequence of that protein (the human p33K prosomal protein) . Best Mode of the Invention I. The Polypeptides - A polypeptide or peptide is a linear series of amino acids connected one to the other by peptide bonds between the α-amino and carboxy groups of adjacent amino acids. Preferred polypeptides for use in producing antibodies for use in the invention are depicted in SEQ ID N0:l and SEQ ID NO:3. The protein or polypeptide may be derived from whole prosomes which are found intracellularly, separately in the blood, and on cell membrane surfaces. The preparation of the peptides or fragments thereof according to the invention may be by recombinant DNA methods or one of the known organic chemical methods for peptide synthesis. Organic chemical methods are especially useful in the synthesis of smaller peptide fragments having the desired activity (e.g. the ability to be used to raise antibodies) . Once the sequence of the fragment is known, the synthesis is rather straightforward for an ordinarily skilled peptide chemist. Organic chemical methods for peptide synthesis include coupling the required amino acids by means of a condensation reaction in either a homogenous phase or with the aid of a solid phase as disclosed by Merrifield. See, e.g. Merrifield, J. Am. Chem. Society, 85, 2149 (1963) and Wang, J. Am. Chem. Soc.. 95, 1328 (1974). Different solid supports and different strategies are known for the solid phase synthesis see, e.g. Barany and Merrifield in The Peptides , Analysis. Synthesis, Biology. Vol. 2, E. Gross and J. Meienhofer, eds., (Acad. Press, N.Y., 1980), Kneib-Cordonier and Mullen Int. J. Peptide Protein Res.. 30, 705-739 (1987) and Fields and Noble Int. J. Peptide Protein Res., 35, 161- 214 (1990). Recombinant DNA methods involve the preparation of the desired peptide or fragment thereof by means of expressing recombinant polynucleotide with a poly- nucleotide sequence which codes for one or more of the peptides in question in a suitable microorganism as host. Generally the process involves introducing into a cloning vehicle (e.g. a plasmid, phage DNA, or other DNA sequence able to replicate in a host cell) a DNA sequence, such as that depicted in FIGs. 1 or 2; intro¬ ducing said cloning vehicle into a suitable eucaryotic or procaryotic host cell; and culturing the host cell thus transformed. Typical host cells include bacteria such as E_s_ coli, Pseudomonas, and Bacillus subtilis. Eukaryotes such as various strains of yeast and mammalian cell lines are also very useful. Once the peptides have been made, fragments useful in the invention can also be determined. Suitable immunochemically active peptide fragments can be found according to means of the method described in Patent Application WO 86/06487 to Geysen et al; Geysen et al, Proc. Natl. Acad. Sci.. (81) 3998-4002, (1984); and Geysen et al, J. Immunol Meth.. (102) 259-274 (1987) based on the "pep-scan" method. In this method a series of overlapping peptides corresponding with partial sequences of the complete peptide under consideration are synthesized and their reactivity with the relevant antibodies is investigated. Of course the fragments or peptides do not have to be exactly as depicted in SEQ ID NO:l and SEQ ID NO:3. It is self-evident that one or more amino acids in the peptides may be substituted with other amino acids or amino acid analogues or derivatives so long as the immunochemical activity is not significantly adversely affected. Furthermore functional derivatives of the peptides may also be used. Such functional derivatives include acid addition salts (such as hydrochloric, hydrobromic, fumaric, phosphoric, ascorbic, tartaric, citric, lactic, maleic, palmitic, and other well-known acids) of the peptides; amides of the peptides and especially the C- terminal amides; esters and especially C-terminal esters; and N-acyl derivatives, especially N-terminal acyl derivatives and in particular N-acetyl derivatives. All functional derivatives are considered "polypeptides", "peptides" and "peptide fragments" according to the invention. Similarly, substitutions can be made in the nucleic acid sequences of SEQ ID NO:l and SEQ ID NO:3. The degeneracy of the genetic code permits substitution of bases in a codon resulting in another codon, but still coding for the same amino acid. For example, the codon for the amino acid gluta ic acid is both GAG and GAA. Consequently it is clear that for the expression of a polypeptide with the amino acid sequence shown in SEQ ID N0:1 or SEQ ID NO:3, or an antigenic fragment thereof, use can be made of a nucleic acid sequence with such an alternative codon composition or compositions different from the nucleic acid sequence shown in the figures. Also included within the scope of the invention is a nucleic acid sequence which hybridizes under stringent conditions iwth a nucleic acid sequence shown in SEQ ID NO:l or SEQ ID NO:3. These hybridizable nucleic acid sequences display substantial ho ology with a nucleic acid sequence shown in SEQ ID NO:1 or 3, or a fragment thereof, but may comprise nucleotide substitutions, mutations, insertions, deletions, inversions, etc. and encode a protein or polypeptide which is functionally equivalent to a prosomal protein or protein from a pro¬ some-like particle. The resulting functionally equiva¬ lent protein, polypeptide or fragment will not be iden¬ tical with a protein shown in SEQ ID N0:1, SEQ ID NO:3, or a fragment thereof, but will have corresponding antigenic properties. II. Antibodies- Antibodies are preferably used to isolate or iden¬ tify the cells of the patient to be studied (i.e. a patient's B4 cells, T4 cells, T8 cells, natural killer cells, T3 lymphocytes, or mixtures of these cells). Such antibodies are preferably monoclonal antibodies or monospecific polyclonal (e.g. affinity purified) anti¬ bodies, although polyclonal antibodies and antibody fragments may also be used. Monoclonal antibodies directed against the various cells are commercially available from companies such as Ortho Diagnostics or Coultronics of Paris, France, or may be made. For exam¬ ple, antibodies against natural killer cells are described in WO 8903396 (claiming priority from U.S. Serial No. 109,730 filed on 16 October 1987). Antibodies against prosomal proteins for use in diagnostic kits and methods according to the invention are preferably monoclonal antibodies directed against the various prosomal proteins. Polyclonal antibodies and modified polyclonal antibodies may also be used however. Monoclonal antibodies produced against the proteins can be produced by biologically pure cell lines of immortalized antibody-producing cells. Immortalized antibody producing cells can be obtained according to any of the various methods which are known in the art, and generally include the steps: 1) inducing suitable cells such as lymphocytes to produce specific antibodies (for example by injecting an immunogen, such as the polypeptide of SEQ ID NO:l or SEQ ID NO:3), 2) immortal¬ izing those cells, and 3) selecting clones out of these cells which produce antibodies of the desired speci¬ ficity and affinity. For example, one method would be that of Kohler and Millstein, Nature, vol. 256, 495-497 (1975). This method comprises immunizing mice with the particular peptide (e.g. that of SEQ ID NO:l or SEQ ID NO:3), isolating spleen cells and fusing these with mouse myeloma cells to obtain hybridomas. Of course animals other than mice could be used as well. All of the specifically identified antibodies (i.e. those directed against the following proteins: p21K, p23K, p25K, p27K, p29K (p28K, p33K) , p30/33K, and p31K) are commercially available from Organon Teknika nv. Deposits of cell lines producing monoclonal antibodies against the p27K and p31K have been made with the Collection Nationale de Cultures des Microorganismes of the Pasteur Institute under numbers 1-588 and 1-589. The antibodies may be likewise made as described in EP 219,368 Al (corresponding to U. S. Patent Application Serial No. 07/298,791). For use in studying a subject's T4 cells to deter¬ mine whether or not the subject is infected with HIV, anti-p27K antibody (p = 0.01) and anti-p30-33K antibody (p = 0.001), are preferred (FIGs. 1 and 2). However, anti-p29K (p = 0.01) and anti-p23K antibody (p = 0.001) may also be used (FIG. 1). Monoclonal antibodies against any of the following anti-prosomal proteins may be used to study a subject's natural killer cells to determine whether or not the subject has been infected with HIV: p25K, p29K (p28K, p33K), p30/33K, and p31K or the similar p21K (FIGs. 3 & 4). Monoclonal antibodies against any of the following anti-prosomal proteins may be used to study a subject's T3 lymphocytes to determine whether or not the subject has been infected with HIV: p23K, p25K, p29K (p28K, p33K) , p30/33K, and p31K or the similar p21K (FIGs. 5 & 6) . Preferred antibodies are those directed against the p21K, p23K, p29K, p30-33K, and the p31K. Although monoclonal antibodies against any of the anti-prosomal proteins (p23K, p25K, p27K, p29K (p28K, p33K) , p30/33K, and p31K) or the similar anti-p21K (from a "prosome-like particle") may be used to study a sub¬ ject's T8 cells to determine whether or not the subject is infected with HIV, anti-p27K antibody and anti-p30- 33K antibody are preferred (FIG. 7). For use in studying a subject's B4 cells to deter¬ mine whether or not the subject is infected with HIV, the anti-p23K antibody is preferred (FIG. 8). III. Diagnostic Methods- In a preferred diagnostic method according to the invention, directly or indirectly labelled (e.g. with phy- coerythrin) antibodies directed against the various cells (e.g. the T3 lymphocyte, T4 lymphocyte, T8 cell, B4 cell or natural killer cell) are used to identify or isolate these cells in a subject's blood containing the cells. The cell-antibody complexes are then incubated with anti¬ bodies directed against prosomal proteins also labelled, e.g with a fluorescent compound. The amount of cells thus labelled are measured or counted, and the measurement is compared with a norm or standard measurement. Several devices can be used with the method. As used herein an "immunochemical reagent" means that the antibodies displaying the appropriate selectivity have been bound to a suitable support or have been provided with a labelling substance. Supports typically used include the inner wall of a microtest well or a cuvette, a tube or capillary, a membrane filter, test strip, or the surface of a particle such as a latex particle, bead, ery- throcyte, dye sol, metal (e.g. gold) sol or metal compound as sol particle. Labelling substances typically used include various radioactive isotopes, fluorescent com¬ pounds, enzymes, dye sols or metal compounds used as sol particles. In one method of detecting the presence of HIV infec¬ tion in a test fluid containing the described cells (e.g. a bodily fluid such as blood, lymph or plasma of a human thought to have been exposed to HIV) , an immunochemical reagent of the invention is bought into contact with the test fluid. After which the presence of immune complexes formed between the antibodies and the surface antigens of the described cells in the test fluid is measured for the presence of an immunochemical reaction. The immunochemi- cal reaction is preferably a sandwich reaction (using labelled antibody) , an agglutination reaction (using also sols), a competition reaction, or an inhibition reaction. In one type of immunoassay, antibodies directed against the cell or cells to be studied are attached to a solid phase, for example the inside of a test tube. The bodily fluid containing the desired cells are then added to the tube so as to bind with the antibody. To the tube coated with the antigen-antibody complex is added an im- munological reagent containing a known amount of the ap- propriate anti-prosomal protein antibody or antibodies labelled with a fluorescent compound. The amount of flu¬ orescence is thus measured, and compared with a norm. Other diagnostic test kits are known to those skilled in the art which may be adapted for use in the instant in- vention. For example, immunological diagnostic test kits include radio-immunoassay or enzyme immunoactivity assay ("EIA") as described in U.S. Patent Reissue No. 32,696 to Schuurs et al. A light scattering immunoassay system is disclosed in EP 0,254,430 A2 to Ortho Diagnostic Systems, Inc. (corresponding to U.S. Serial No. 879,236 filed 26 June 1986). Diagnostic test kits using two monoclonal antibodies of high binding affinity are described in U. S. Patent Nos. 4,376,110 and 4,486,530 to Hybritech Inc. A method of phenotyping a white blood cell comprises incubating the cell with labelled antibodies reactive with a prosomal protein; and analyzing the cell's surface by the means of the activity of the label for the presence of proteins reactive with the labeled antibody. EXAMPLE I DOUBLE MARKING IMMUNOLOGY The various cells to be analyzed were identified and isolated according to the following procedure. Monoclonal antibodies labelled with phycoerythrin ("PE") were intro¬ duced into 0.1 milliliters (ml) aliquots of blood and allowed to incubate for 10 minutes at room temperature. The monoclonal antibodies used in the various aliquots were anti-CD3 (T3-PE) , anti-CD4 (T4-PE) , anti-CD8 (T8-PE) , anti-CD2 (11-PE), anti-CD19 (B4-PE) , anti-NK (NK-PE) . The red blood cells were lysed and fixed for passage by a flow cytometer QPREP (formic acid / formaldehyde - Coultronics France of Paris, France) to fix the cell membrane to ensure that it is not destroyed during preparation. EXAMPLE II DOUBLE MARKING IMMUNOLOGY Mouse serum was incubated for 4 to 5 hours at 4 degrees centigrade. It was washed once with concentrated PBS. It was then mixed with monoclonal antibodies directed against prosomal proteins, incubated, and allowed to cool to room temperature after 30 minutes. It was again washed with concentrated PBS one time. Goat anti- mouse fluorescein-isothiocyanate ("GAM-FITC") was then added in order to reveal the monoclonal antibodies against the prosomal proteins (30 minute incubation time at room temperature) . It was again washed with concentrated PBS one time. It was then resuspended in 0.5 ml of concen¬ trated PBS one time. Analysis of any fluorescence was made with CFM (flux cytometry) . EXAMPLE III Using the procedures of EXAMPLES I and II, the blood of 20 people who were HIV positive (2 of which were suf- fering from AIDS) was compared with the blood of a group of non-infected individuals. The results of comparing the subjects' (HIV-1) sera are graphically illustrated in FIGs. 1 through 8. EXAMPLE IV SEQ ID NO:l depicts a 266 amino acid polypeptide along with the DNA coding therefor. The cDNA encoding this protein was isolated from a Hela cell cDNA expression library ((lambda)gtll) , using a monoclonal antibody directed against the p27k prosomal protein (Organon Teknika) . The insert was subcloned in pTZ18R plasmid vec¬ tor for sequencing. The cDNA lacks approximately fifty nucleotides at the 5' end (as indicated by Northern blot analysis). The length of the DNA is 980 nucleotides, with a coding region of 798 nucleotides (266 amino acids). EXAMPLE V SEQ ID NO:3 depicts a 269 amino acid polypeptide along with the DNA coding therefor. The cDNA encoding this protein was isolated from a Hela cell cDNA expression library ((lambda)gtll) using a monoclonal antibody (62A32) directed against the p33K prosomal protein. The insert was subcloned in pTZlδR plasmid vector for sequencing. Sequencing of the insert in both directions revealed an open reading frame of 810 nucleotides and a full length sequence with a large 5' leader. The length of the DNA is 1264 nucleotides, with a coding region of 810 nucleotides (269 amino acids). EXAMPLE VI The protein of EXAMPLE IV (i.e. that of SEQ ID NO:l) is used to produce monoclonal antibodies against the p27K prosomal protein. The method comprises immunizing mice with the peptide, isolating spleen cells from the mice and fusing these with mouse myeloma cells to obtain hybrido- mas. The hybridomas are screened for those producing antibodies against the p27K protein. EXAMPLE VII Monoclonal antibodies against the polypeptide of EXAMPLE V (i.e. the protein of SEQ ID NO:3) are produced in a similar manner as that described in EXAMPLE VI. SEQUENCE LISTING (1) GENERAL INFORMATION: (i) (ii) TITLE OF INVENTION: Diagnostic Method (iii) NUMBER OF SEQUENCES: 4 (2) INFORMATION FOR SEQ ID NO:l: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 980 nucleotides (B) TYPE: nucleotide (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: CDNA (vi) ORIGINAL SOURCE: (A) ORGANISM: human (vii) IMMEDIATE SOURCE: (A) LIBRARY: Hela cell cDNA expression library (lambda)gtll (ix) FEATURE: (B) LOCATION: 4..804 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:l: CGG TGC CTG GTG CGG GAG CTA CGG GGC CCA GGG ATT GTG TTT AAA GTA 48 Cys Leu Val Arg Glu Leu Arg Gly Pro Gly lie Val Phe Lys Val 1 5 10 15 GTG CTT CTA CCA ACA TGT CCC GTG GTT CCA GCG CCG GTT TTG ACC GCC 96 Val Leu Leu Pro Thr Cys Pro Val Val Pro Ala Pro Val Leu Thr Ala 20 25 30 ACA TTA CCA TTT TTT TCA CCC GAG GGT CGG CTC TAC CAA GTA GAA TAT 144 Thr Leu Pro Phe Phe Ser Pro Glu Gly Arg Leu Tyr Gin Val Glu Tyr 35 40 45 GCT TTT AAG GCT ATT AAC CAG GGT GGC CTT ACA TCA GTA GCT GTC AGA 192 Ala Phe Lys Ala lie Asn Gin Gly Gly Leu Thr Ser Val Ala Val Arg 50 55 60 GGG AAA GAC TGT GCA GTA ATT GTC ACA CAG AAG AAA GTA CCT GAC AAA 240 Gly Lys Asp Cys Ala Val lie Val Thr Gin Lys Lys Val Pro Asp Lys 65 70 75 TTA TTG GAT TCC AGC ACA GTG ACT CAC TTA TTC AAG ATA ACT GAA AAC 288 Leu Leu Asp Ser Ser Thr Val Thr His Leu Phe Lys lie Thr Glu Asn 80 85 90 95 ATT GGT TGT GTG ATG ACC GGA ATG ACA GCT GAC AGC AGA TCC CAG GTA 336 He Gly Cys Val Met Thr Gly Met Thr Ala Asp Ser Arg Ser Gin Val 100 105 110 CAG AGG GCA CGC TAT GAG GCA GCT AAC TGG AAA TAC AAG TAT GGC TAT 384 Gin Arg Ala Arg Tyr Glu Ala Ala Asn Trp Lys Tyr Lys Tyr Gly Tyr 115 120 125 GAG ATT CCT GTG GAC ATG CTG TGT AAA AGA ATT GCC GAT ATT TCT CAG 432 Glu He Pro Val Asp Met Leu Cys Lys Arg He Ala Asp He Ser Gin 130 135 140 GTC TAC ACA CAG AAT GCT GAA ATG AGG CCT CTT GGT TGT TGT ATG ATT 480 Val Tyr Thr Gin Asn Ala Glu Met Arg Pro Leu Gly Cys Cys Met He 145 150 155 TTA ATT GGT ATA GAT GAA GAG CAA GGC CCT CAG GTA TAT AAG TGT GAT 528 Leu He Gly He Asp Glu Glu Gin Gly Pro Gin Val Tyr Lys Cys Asp 160 165 170 175 CCT GCA GGT TAC TAC TGT GGG TTT AAA GCC ACT GCA GCG GGA GTT AAA 576 Pro Ala Gly Tyr Tyr Cys Gly Phe Lys Ala Thr Ala Ala Gly Val Lys 180 185 190 CAA ACT GAG TCA ACC AGC TTC CTT GAA AAA AAA GTG AAG AAG AAA TTT 624 Gin Thr Glu Ser Thr Ser Phe Leu Glu Lys Lys Val Lys Lys Lys Phe 195 200 205 GAT TGG ACA TTT GAA CAG ACA GTG GAA ACT GCA ATT ACA TGC CTG TCT 672 Asp Trp Thr Phe Glu Gin Thr Val Glu Thr Ala He Thr Cys Leu Ser 210 215 220 ACT GTT CTA TCA ATT GAT TTC AAA CCT TCA GAA ATA GAA GTT GGA GTA 720 Thr Val Leu Ser He Asp Phe Lys Pro Ser Glu He Glu Val Gly Val 225 230 235 GTG AC Λ GTT GAA AAT CCT AAA TTC AGG ATT CTT ACA GAA GCA GAG ATT 768 Val Thr Val Glu Asn Pro Lys Phe Arg He Leu Thr Glu Ala Glu He 240 245 250 255 GAT GCT CAC CTT GTT GCT CTA GCA GAG AGA GAC TAAACATTGT CGTTAGTTTA 821 Asp Ala His Leu Val Ala Leu Ala Glu Arg Asp 260 265 CCAGATCCGT GATGCCACTT ACCTGTGTGT TTGGTAACAA CAAACAAACA TCATGGAGGT 881 CCCTGGATTG AAAAAGGAGC CTCTCCCACT CCTCCTACCA CCGAAGTGGT TAGGACTCTA 941 TATAAATAAA AACAAGGCTT TTGGAAAAAA AAAAAAAAA 980 (2) INFORMATION FOR SEQ ID NO:2: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 266 amino acids (B) TYPE: amino acid (C) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (vi) ORIGINAL SOURCE: (A) ORGANISM: human (xi) SEQUENCE DESCRIPTION: SEQ ID NO:2: Cys Leu Val Arg Glu Leu Arg Gly Pro Gly He Val Phe Lys Val 1 5 10 15 Val Leu Leu Pro Thr Cys Pro Val Val Pro Ala Pro Val Leu Thr Ala 20 25 30 Thr Leu Pro Phe Phe Ser Pro Glu Gly Arg Leu Tyr Gin Val Glu Tyr 35 40 45 Ala Phe Lys Ala He Asn Gin Gly Gly Leu Thr Ser Val Ala Val Arg 50 55 60 Gly Lys Asp Cys Ala Val He Val Thr Gin Lys Lys Val Pro Asp Lys 65 70 75 Leu Leu Asp Ser Ser Thr Val Thr His Leu Phe Lys He Thr Glu Asn 80 85 90 95 He Gly Cys Val Met Thr Gly Met Thr Ala Asp Ser Arg Ser Gin Val 100 105 110 Gin Arg Ala Arg Tyr Glu Ala Ala Asn Trp Lys Tyr Lys Tyr Gly Tyr 115 120 125 Glu He Pro Val Asp Met Leu Cys Lys Arg He Ala Asp He Ser Gin 130 135 140 Val Tyr Thr Gin Asn Ala Glu Met Arg Pro Leu Gly Cys Cys Met He 145 150 155 Leu Ilr Gly He Asp Glu Glu Gin Gly Pro Gin Val Tyr Lys Cys Asp 160 165 170 175 Pro Ala Gly Tyr Tyr Cys Gly Phe Lys Ala Thr Ala Ala Gly Val Lys 180 185 190 Gin Thr Glu Ser Thr Ser Phe Leu Glu Lys Lys Val Lys Lys Lys Phe 195 200 205 Asp Trp Thr Phe Glu Gin Thr Val Glu Thr Ala He Thr Cys Leu Ser 210 215 220 Thr Val Leu Ser He Asp Phe Lys Pro Ser Glu He Glu Val Gly Val 225 230 235 Val Thr Val Glu Asn Pro Lys Phe Arg He Leu Thr Glu Ala Glu He 240 245 250 255 Asp Ala His Leu Val Ala Leu Ala Glu Arg Asp 260 265 (2) INFORMATION FOR SEQ ID NO:3: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 1264 base pairs (B) TYPE: nucleic acid (C) STRANDEDNESS: double (D) TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (vi) ORIGINAL SOURCE: (A) ORGANISM: human (vii) IMMEDIATE SOURCE: (A) LIBRARY: Hela cell cDNA expression library (lambda)gtll (i ) FEATURE: (B) LOCATION: 328..1137 (xi) SEQUENCE DESCRIPTION: SEQ ID NO:3: CGCGAGCCGG GACCACGCCG ACCCAGCGTG CCCAGGCCGA GGAAAGCGCG GCGGCGGCAG TCCGAAGACC CACCGGACTG AAAGAGAAGG ACGAGGTCAT CTTCGGACGG GAGGGGCAAG CCAGCCATCC TGGGACCCCA GGCGTGCAGG TTCTCTTTGA GGGTATTCCA CCCTGCAAAA AGCATGTATT CATGGTCAGC TCTCAGCAAG GCCAGTAGCA GAGTGGTAAA GGCCTTGGCC CTCCAAGGCT GGGAAAAGAC AATGACAAGT CAAATCCAGA CCTATGTTGG ATGTTGGTCT ACTAGGTGAC TGTCTCCTGG AAATGTT ATG CAG CTC AGC AAG GTG AAG TTT CGA Met Gin Leu Ser Lys Val Lys Phe Arg 1 5 AAT CAC TAT GAC AAT GAT GTC ACT GTT TGG ACC GCC CAG GGC AGG ATT Asn Gin Tyr Asp Asn Asp Val Thr Val Trp Thr Ala Gin Gly Arg He 10 15 20 25 CAT CAA ATT GAA TAT GCA ATG GAA GCT GTT AAA CAA GGT TCA GCC ACA 4 His Gin He Glu Tyr Ala Met Glu Ala Val Lys Gin Gly Ser Ala Thr 30 35 40 GTT GGT CTG AAA TCA AAA ACT CAT GCA GTT . TTG GTT GCA TTG AAA AGG 4 Val Gly Leu Lys Ser Lys Thr His Ala Val Leu Val Ala Leu Lys Arg 45 50 55 GCG CAA TCA GAG CTT GCA GCT CAT CAG AAA AAA ATT CTC CAT GTT GAC 5 Ala Gin Ser Glu Leu Ala Ala His Gin Lys Lys He Leu His Val Asp 60 65 70 AAC CAT ATT GGT ATC TCA ATT GCG GGG CTT ACT GCT GAT GCT AGA CTG 5 Asn His He Gly He Ser He Ala Gly Leu Thr Ala Asp Ala Arg Leu 75 80 85 TTA TGT AAT TTT ATG CGT CAG GAG TGT TTG GAT TCC AGA TTT GTA TTC 6 Leu Cys Asn Phe Met Arg Gin Glu Cys Leu Asp Ser Arg Phe Val Phe 90 95 100 105 GAT AGA CCA CTG CCT GTG TCT CGT CTT GTA TCT CTA ATT GGA AGC AAG Asp Arg Pro Leu Pro Val Ser Arg Leu Val Ser Leu He Gly Ser Lys 110 115 120 ACC CAG ATA CCA ACA CAA CGA TAT GGC CGG AGA CCA TAT GGT GTT GGT Thr Gin He Pro Thr Gin Arg Tyr Gly Arg Arg Pro Tyr Gly Val Gly 125 130 135 CTC CTT ATT GCT GGT TAT GAT GAT ATG GGC CCT CAC ATT TTC CAA ACC Leu Leu He Ala Gly Tyr Asp Asp Met Gly Pro His He Phe Gin Thr 140 145 150 TGT CCA TCT GCT AAC TAT TTT GAC TGC AGA GCC ATG TCC ATT GGA GCC Cys Pro Ser Ala Asn Tyr Phe Asp Cys Arg Ala Met Ser He Gly Ala 155 160 165 CGT TCC CAA TCA GCT CGT ACT TAC TTG GAG AGA CAT ATG TCT GAA TTT Arg Ser Gin Ser Ala Arg Thr Tyr Leu Glu Arg His Met Ser Glu Phe 170 175 180 185 ATG GAG TGT AAT TTA AAT GAA CTA GTT AAA CAT GGT CTG CGT GCC TTA Met Glu Cys Asn Leu Asn Glu Leu Val Lys His Gly Leu Arg Ala Leu 190 195 200 AGA GAG ACG CTT CCT GCA GAA CAG GAC CTG ACT ACA AAG AAT GTT TCC Arg Glu Thr Leu Pro Ala Glu Gin Asp Leu Thr Thr Lys Asn Val Ser 205 210 215 ATT GGA ATT GTT GGT AAA GAC TTG GAG TTT ACA ATC TAT GAT GAT GAT He Gly He Val Gly Lys Asp Leu Glu Phe Thr He Tyr Asp Asp Asp 220 225 230 GAT GTG TCT CCA TTC CTG GAA GGT CTT GAA GAA AGA CCA CAG AGA AAG Asp Val Ser Pro Phe Leu Glu Gly Leu Glu Glu Arg Pro Gin Arg Lys 235 240 245 GCA CAG CCT GCT CAA CCT GCT GAT GAA CCT GCA GAA AAG GCT GAT GAA Ala Gin Pro Ala Gin Pro Ala Asp Glu Pro Ala Glu Lys Ala Asp Glu 250 255 260 265 CCA ATG GAA CAT TAAGTGATAA GCCAGTCTAT ATATGTATTA TCAAATATGT Pro Met Glu His AAGAATACAG GCACCACATA CTGATGACAA TAATCTATAC TTTAACCAAA AGTTGCAGAG TGGTGGAATG CTATTTTTTA GGAATCAGTC (2) INFORMATION FOR SEQ ID NO:4: (i) SEQUENCE CHARACTERISTICS: (A) LENGTH: 269 amino acids (B) TYPE: amino acid (C) TOPOLOGY: linear (ii) MOLECULE TYPE: protein (vi) ORIGINAL SOURCE: (A) ORGANISM: human ( i) SEQUENCE DESCRIPTION: SEQ ID NO:4: Met Gin Leu Ser Lys Val Lys Phe Arg 1 5 Asn Gin Tyr Asp Asn Asp Val Thr Val Trp Thr Ala Gin Gly Arg He 10 15 20 25 His Gin He Glu Tyr Ala Met Glu Ala Val Lys Gin Gly Ser Ala Thr 30 35 40 Val Gly Leu Lys Ser Lys Thr His Ala Val Leu Val Ala Leu Lys Arg 45 50 55 Ala Gin Ser Glu Leu Ala Ala His Gin Lys Lys He Leu His Val Asp 60 65 70 Asn His He Gly He Ser He Ala Gly Leu Thr Ala Asp Ala Arg Leu 75 80 85 Leu Cys Asn Phe Met Arg Gin Glu Cys Leu Asp Ser Arg Phe Val Phe 90 95 100 105 Asp Arg Pro Leu Pro Val Ser Arg Leu Val Ser Leu He Gly Ser Lys 110 115 120 Thr Gin He Pro Thr Gin Arg Tyr Gly Arg Arg Pro Tyr Gly . Val Gly 125 130 135 Leu Leu He Ala Gly Tyr Asp Asp Met Gly Pro His He Phe Gin Thr 140 145 150 Cys Pre ser Ala Asn Tyr Phe Asp Cys Arg Ala Met Ser He Gly Ala 155 160 165 Arg Ser Gin Ser Ala Arg Thr Tyr Leu Glu Arg His Met Ser Glu Phe 170 175 180 185 Met Glu Cys Asn Leu Asn Glu Leu Val Lys His Gly Leu Arg Ala Leu 190 195 200 Arg Glu Thr Leu Pro Ala Glu Gin Asp Leu Thr Thr Lys Asn Val Ser 205 210 215 He Gly He Val Gly Lys Asp Leu Glu Phe Thr He Tyr Asp Asp Asp 220 225 230 Asp Val Ser Pro Phe Leu Glu Gly Leu Glu Glu Arg Pro Gin Arg Lys 235 240 245 Ala Gin Pro Ala Gin Pro Ala Asp Glu Pro Ala Glu Lys Ala Asp Glu 250 255 260 265 Pro Met Glu His

Claims: Claims What is claimed is: 1. A method of diagnosing an human immunodeficiency virus infection in a subject comprising: (a) analyzing, with labelled antibodies, labelled antibody fragments or mixtures thereof, a bodily fluid taken from the subject for proteins present on cell surfaces, said proteins reactive with antibodies directed against prosomal proteins or prosome-like proteins, to obtain a quantitative determination of the amount or percentage of cells displaying the protein on their surface; and (b) comparing the amount or percentage thus obtained with a standard from a person not infected with human immunodeficiency virus. 2. The method of claim 1 wherein said antibodies or antibody fragments are selected or derived from the group of antibodies directed against prosomal proteins p23K, p25K, p27K, p29K (p28K, p33K) , p30/33K, and p31K or the prosomal-like particle p21K. 3. The method of claim 2 wherein the cells are the subject's B4 cells and the antibody is an anti-p23K monoclonal antibody. 4. The method of claim 2 wherein the cells are the subject's T4 cells and the antibody is an anti-p27K antibody raised by use of the protein identified in SEC ID NO:2, or an antigenic fragment thereof. 5. The method of claim 1 wherein the antibody is an antibody raised by use of the protein identified in SEC ID NO:4, or an antigenic fragment thereof. 6. The method of claim 1 wherein the cells are the subject's T8 cells and the antibodies are monoclonal antibodies against any of the anti-prosomal proteins p23K, p25K, p27K, p29K (p28K, p33K) , p30/33K, and p31K or the anti-p21K. 7. The method of claim 1 wherein the cells are the subject's natural killer cells and the antibodies are monoclonal antibodies directed against the following proteins p25K, p29K (p28K, p33K) , p30/33K, and p31K or the similar p21K. 8. The method of claim 1 wherein the cells are the subject's T3 lymphocytes and the antibodies are antibodies against any of the following anti-prosomal proteins: p23K, p25K, p29K (p28K, p33K) , p30/33K, and p31K or the p21K protein. 9. A method of diagnosing a human immunodeficiency virus infection comprising: identifying or isolating cells selected from the group consisting of B4 cells, T4 cells, T8 cells, natural killer cells, T3 lymphocytes, or mixtures of these cells with antibodies directed against these cells; incubating the thus isolated or identified cells with labelled monoclonal antibodies directed against prosomal proteins; and thus analyzing proteins present on the cell's surface. 10. A diagnostic test kit for diagnosing a human immunodeficiency virus infection comprising: antibodies directed against cells selected from the group consisting of B4 cells, T4 cells, T8 cells, natural killer cells, T3 lymphocytes, or mixtures of these cells associated with a solid surface; and a diagnostic fluid containing labelled antibodies against anti-prosomal proteins. 11. A polypeptide having part or all of the primary structural conformation of the polypeptide depicted in SEQ ID N0:1 characterized by being the product of procaryotic or eucaryotic expression of an exogenous DNA source. 12. A polypeptide having part or all of the primary structural conformation of the polypeptide depicted in SEQ ID NO:3 characterized by being the product of procaryotic or eucaryotic expression of an exogenous DNA source. 13. A purified and isolated polypeptide of SEQ ID NO:l or SEQ ID NO:3. 14. A DNA sequence for use in securing expression in a procaryotic or eucaryotic host cell of a peptide product having at least part of the primary structure of the polypeptide depicted in SEQ ID NO:l or SEQ ID NO:3, said DNA sequence selected from the group consisting of: (a) the DNA sequence set out in SEQ ID NO:l or SEQ ID NO:3 or their complementary strands; (b) DNA sequences which hybridize under stringent conditions to the protein coding regions of the DNA sequences defined in (a) or fragments thereof; and (c) DNA sequences which, but for the degeneracy of the genetic code, would hybridize to the DNA sequences defined in (a) and (b) . 15. A biologically functional circular plasmid or viral DNA vector including a DNA sequence according to claim 14. 16. A procaryotic or eucaryotic host cell transformed or transfected with a DNA sequence according to claim 14.

Inventors: BEY FAYCAL, BUREAU JEAN-PAUL, SCHERRER KLAUS, BEY, FAYCAL, BUREAU, JEAN-PAUL, SCHERRER, KLAUS
Applicants: PRO SOMA SARL, PRO-SOMA S.A.R.L.
Application year: 1991
Main classification: G01N33
IPC codes: C07K14, C07K16, C12N1, C12N5, C12N9, C12N15, C12P21, C12R1, G01N33