PESTIVIRUS NUCLEOTIDE SEQUENCES AND POLYPEPTIDES

Abstract: A method of protecting a subject, in particular a domestic animal, against a microbial infection comprises the use of a combination of a nucleotide sequence coding for an antigen related to the infection and a stop transfer nucleotide sequence. A method of constructing a transgenic animal which is resistant to the infectious organism comprises incorporating a nucleotide sequence related to the infection in the genome of the animal. The method is especially useful for providing protection against a pestivirus infections such as hog cholera (swine fever). Also provided are nucleotide sequences and vector constructs thereof, and polypeptides useful for producing vaccines and for diagnosis. A diagnostic method is given which differentiates between infected animals and vaccinated animals.

Description: Pestivirus nucleotide sequences and polypeptides The invention relates to a method for providing protection against and diagnosis of infections, in particular protection against and diagnosis of pestivirus infections. Hog cholera virus (or swine fever virus) in pigs and two other viruses, bovine viral diarrhoea virus (BVDV) in cattle and border disease virus (BDV) in sheep, all belong to one genus, the genus pestivirus in the family of Togaviridae ( estaway et al., Intervirology, 24, 125-139 (1985)); these viruses possess a plus strand, i.e. infectious, RNA genome. Structurally and antigenically, these three viruses are closely related to one other: an antiserum directed against one of the three will generally also react with the other two. BVDV and BDV resemble one another so closely that they are actually regarded as one virus type (Terpstra, in: Progress in Veterinary Microbiology and Immunology. Ed.: R. Pandey, Vol 3., pp. 17 -1 8 (1985))- Although each of the three viruses has its own primary host, BVDV and BDV can also infect other ruminants, and, incidentally, also pigs. A property common to the three viruses is that they can cause congenital infections (Van Oirschot, Veterinary Microbiology 9_. 113-120 (1983)). The complete nucleotide sequence of one strain of BVDV is known from EP-A-208.672; complete nucleotide sequences of hog cholera virus and BDV are not yet known. Vaccination against pestivirus infections is generally carried out using live, attenuated virus strains. Thus, vaccination against hog cholera is usually performed with the aid of specific strains of the hog cholera virus (HCV) , for example the so-called Chinese strain. Even though such vaccinations usually provide sufficient protection against hog cholera, multiplication of the vaccine virus strains is often a problem. In addition, the Chinese strain and other vaccine strains can pass through the placenta of pregnant sows after vaccination, and in this way the foetuses can be infected with the vaccine virus. As a result, the foetuses may die or- have long-term illness after birth (Overby and Eskildsen, CEC Report Hog Cholera/Classical and African Swine Fever EUR 04, 420-429 (1976)). The Chinese vaccine virus has been found in the tonsils for up to 15 days after vaccination (Terpstra, Tijdschrift voor Diergeneeskunde, 103, 678-684 (1978)) and can persist longer in swine. This can be confusing if such a vaccinated animal is sub- mitted for diagnosis; differentiation from field virus is possible only after further diagnostic examination. Antibodies directed against the Chinese strain and also against other HCV vaccine viruses cannot be distinguished from those directed against field virus. Consequently, vaccination of a population of pigs against hog cholera and simultaneous detection of HCV field infections in this population by means of serological screening is impossible. The known methods for protection of cattle and sheep against BVDV and BDV infections respectively have corresponding drawbacks. There is therefore a need for improved, simpler means for protection against and diagnosis of pestivirus infections, in particular hog cholera. The complete RNA nucleotide sequence of the virulent HCV strain Brescia has now been found. It has furthermore been found that sequences which code for specific parts of structural proteins of an infectious organism are particularly suitable as a base material for protection against the infection. The invention therefore relates to these nucleotide sequences, in particular to sections thereof which are suitable for protection against an infection. In the present description, the invention is explained with reference to pestivirus infections, in particular to hog cholera, but the invention encompasses the protection and diagnosis of infections, more specifically the production of immunogenicity, in general. The nucleotide sequence of HCV is shown in Figure 1. The sequence shown is that of the Brescia strain, clone No. Ill (CDI, Lelystad) . It has been found that strains of hog cholera virus possess a high degree of serological homology; hog cholera strains cannot be differentiated from one other by means of cross- neutralization tests, but can be differentiated from BVDV (bovine viral diarrhoea virus) and BDV (border disease virus) (Wensvoort et al., Vet. Microbiol., 20: 291-306 (I989) ; Thesis, University of Utrecht (1989), chapter 3). It has also been found that strains of hog cholera are uniformly recognized by a group of monoclonal anti¬ bodies against the envelope protein El. This group of monoclonal antibodies does not recognize BVDV or BDV strains (Wensvoort et al., Vet. Microbiol., 21: 9~20 (1989); Thesis (198 ) , chapter 4). Con¬ served epitopes on the HCV envelope protein El have been found in all 94 HCV strains investigated (Wensvoort, Thesis 1989, pp. 47 and 78). Sequences of HCV strains other than Brescia which show slight differences with regard to the sequence according to Fig. 1 thus essentially also belong to the invention. In the text which follows, the numerals relate to the genome of HCV strain Brescia; the positions may be slightly different for other strains, but these differences are not significant for the invention. The sequence shown comprises an open reading frame of 11,694 nucleotides which is bordered on either side by a non-coding region. This non-coding region has a length of 3 O nucleotides at the 5' end and a length of 229 nucleotides, starting with the stop signal TGA, at the 3' end. The open reading frame is therefore numbered (5 1 )361-12054(3' ) • The section from nucleotide 3 I to 3804 codes for structural proteins. These include a capside protein which is coded for by the region located approximately between 3 1 and 1162, an envelope protein, also called E2, which is coded for by adjacent nucleotides 1162— 2070, a protein (not yet identified in detail), also called E3, which is encoded by adjacent nucleotides 2071-2430, and an envelope protein, also called El, which is encoded by adjacent nucleotides 2431-3804. The envelope proteins called E2 and El thus have the approximate positions 267*570 and 691-1148, respectively, in the amino acid sequence according to Fig. 1. El, in particular, appears to be effective in generating antibodies which provide protection against pestivirus infections. Immunodominant subsections of the El sequence appear to be present in the region from Leu 691 to Glu 1030, while the hydrophobic region which extends approximately from Phe 1031 to Asp 1148 appears to be another subsection of the El sequence which is essential for the protective action. The latter subsection contains three trans- membrane regions (TMR) , which allow the peptide to be anchored in the cell membrane. It has been found that the presence of at least one such trans-membrane region in the peptide is very important in achieving a high degree of protection against the pestivirus. One TMR is located between residues Phe 1031 and Leu IO63 and is preferably present in the sequence used for protection. Polypeptides which correspond only to one section of El and which include a trans- membrane region are also suitable for providing protection. Another sequence that is important for providing protection is a polar charged region which starts at approximately Tyr 1012 and terminates at Phe 1031. This sequence together with the transmembrane region encoded by Phe 1031 up to Leu IO63, as it is in El, is most preferably present in the sequence used for protection. The sequence encoded by Tyr 1012 - Leu IO63 is a so called stop transfer region (and anchors a protein in the membrane of rough endoplasmatic reticulum) . Stop transfer sequences consist of a hydrophobic domain of 20-25 residues (i.e. TMR) and a polar region of 10-15 residues (i.e. Tyr 1012-Phe 1031) (E. Perara and V.R. Lingappa, R.C. Das and P.W. Robbins, Eds. (Acadamic Press, New York, 1988) , pp. 3-47). This sequence may also be coupled to another antigen encoded by the pestivirus RNA (i.e. E2, E3, pδO) , or to a heterologous antigen (i.e. bacterial toxin, peplomer antigen of a coronavirus, i.e. TGE, Haemagglutinine of an influenza virus, i.e. porcine influenza virus, etc. etc.) and thereby increase the immunogenicity of such an antigen (irrespective of the expression system) . Also the TMR apart from the polar region may be used, or the polar region apart from the TMR. TMR and polar region may also be used in conjunction with a heterologous polar region and TMR respectively. The use of a stop transfer region is not limited to such regions derived from a pestivirus. Further, the immunogenicity of a pestivirus antigen, but also of other antigens, can also be increased when the sequence encoding the antigen is coupled to a heterologous stop transfer region or part thereof. The term polypeptides used here is to be understood to mean oligopeptides and polypeptides, without limitation of their lengths. The polypeptides can optionally be glycosylated or modified in some other way. Important nucleotide sequences for protection according to the invention are therefore those which code for the envelope protein El, and sections thereof, including a stop transfer sequence. The sequence according to the invention therefore preferably contains at least one section of the nucleotide sequence (5 ) l-38θ4 (number- ing according to Fig. 1). The sequence more preferably contains a section from the sequence 2431-3804, in particular 2431-3549- Another preferred sequence for the diagnostics according to the invention comprises at least one section of the sequence 1162-2430. The said areas are valid for HCV; for BVDV and BDV their positions are somewhat different, but the general arrangement is the same; the sequences of the corresponding envelope proteins and sections thereof are also particularly useful for protection and diagnostics. The importance of the structural proteins and of poly¬ peptides completely or partially corresponding thereto for the protective action against pestivirus infections is evident from the fact that pigs inoculated with a recombinant virus comprising a cDNA sequence which codes for a structural protein of HCV, in particular El, produce antibodies against El, form neutralizing antibodies against HCV and are protected against infection with virulent hog cholera virus. Sequences derived from the sequence presented in Fig. 1 or gene sequences encoding pestivirus El, E2, E3 or parts thereof may also be used for constructing transgenic animals that are resistant to an infection with the pestivirus. This form of immunization of animals, termed intracellular immunization (Baltimore, Nature, 335» 395-396, 1988), can take many forms; sequences derived from the sequence as presented in Fig. 1 (or any other pestivirus sequence) may be expressed as an (antisense) RNA that interferes with replica¬ tion or expression of the pestivirus genome; sequences encoding a pestiviral glycoprotein (El, E2 and E3) may be made biologically inactive by mutation and such expressed mutated gene products may compete with the normal product in infected cells, thereby quenching the production of viable virus; also surface glycoproteins like El, and possibly also E2 and E3 may be expressed in the transgenic animal and bind to the cellular receptor of the pestivirus, thereby preventing their infection. In chicken, such an expressed surface glycoprotein (gpδ5 of subgroup A of ALV (avian leukosis virus) has been shown to confer resistance to infection by avian leukosis virus (subgroup A) (D.W. Salter and L.B. Crittenden, Theoretical and Applied Genetics, 7J. 457-461 (1989)). The invention furthermore relates to recombinant RNA and DNA in which one of the sequences described above is incorporated; a recombinant polynucleotide of this type has, for example, the form of a recombinant virus. A suitable carrier virus for this is the pseudo-rabies virus (PRV) , but other viruses, such as vaccinia virus, adenovirus, baculovirus, SV4θ, retrovirus, hepatitis B virus and derivatives thereof, can also be used. Cells which have undergone stable transformation with one of these viruses, cells in which these viruses replicate episomally or lytically and cells which have undergone stable transformation with suitable vectors and express the structural protein, in particular the El protein or a part thereof, i.e. all sub-units optionally obtained via recombinant DNA in prokaryotic or eukaryotic systems, may furthermore be used. Such a recombinant system is exceptionally suitable as a basis for a vaccine against a pestivirus infection, in particular against HCV. The invention therefore also relates to vaccines which contain the nucleotide sequence in a recombinant virus or in another form. The invention also concerns any vaccine which is developed on the basis of a full length cDNA copy, and/or the plus strand transcript thereof, of a pestivirus sequence. Such a vaccine can be developed e.g. by mutation of the sequence encoding a conserved epitope of a structural protein, in particular the HCV envelope protein El (Wensvoort, Thesis, 1 8 . PP. 47 and 78). In this way, a vaccine strain can be obtained that allows the serological differentiation of vaccinated animals (with the vaccine strain) from animals infected with a field virus. Mutation of the cDNA copy may also indicate markers of virulence and immunogenicity and may lead to a less virulent and better immunogenic vaccine strain. The invention further includes vaccines which contain the polypeptides which, as described above, correspond completely or partially to the surface proteins, as antigen. The antibodies generated with these polypeptides may also be used for diagnosing pestivirus infections and are also embraced by the invention. The invention furthermore relates to methods and means for diagnosis of an infection, in which an oligonucleotide or polynucleo- tide probe (RNA or DNA) , or an antigen polypeptide or an antibody as described above, is used, as well as to kits containing such means as essential component. For the purpose of diagnostics, other sequences in the structural and non-structural region are also important. A particularly useful diagnosis provided by the invention is that in which it is possible to differentiate serologically between an animal vaccinated according to the invention and an infected animal, in particular with HCV. In this case, a polypeptide other than that which generates the protective antibodies is used: the serum of infected animals then contains antibodies against this second polypeptide, while the serum of vaccinated animals does not. The E2 protein or a section thereof is a suitable polypeptide for this purpose, but other polypeptides encoded by the pestivirus genome are in principle also suitable. The following describes methods for culturing the viruses, isolating and cloning RNA, determination of the sequence and preparation of peptides and antisera. Cells and viruses SK-6 cells [Kasza et al., Research Vet. Sc. 13.46-51 (1979)3 were grown in Eagle basal medium containing 5# foetal bovine serum (FBS) . FBS was irradiated with gamma radiation and subsequently examined thoroughly for BVDV by prolonged growth of foetal bovine epithelial cells (FBE) in media containing such sera. The cells were tested for BVDV in a sensitive immunoperoxidase monolayer assay (IPMA) (Wensvoort et al., Vet. Microbiol. 12, 101-108 (1986)). FBS was also checked for BVDV antibodies by measurement of the neutrali¬ zation index of a standard BVDV stock in an IPMA. The only sera used were those which were free from BVDV and contained no BVDV anti¬ bodies or had a low BVDV antibody titre. The HCV Brescia strain was not cytopathogenic and was bio¬ logically cloned by means of a threefold end point dilution. After three amplification steps a cloned virus stock (Brescia, clone No. HI) having a titre of 3.10? TCIDCQ/Π-I was obtained. Isolation of intracellular RNA from HCV Monolayers of SK-6 cells in 175 cι_~ bottles (Nunclon) were infected with HCV at a multiplicity of infection (MOI) of 10 CID^Q per cell. They were incubated at 37°C for 1.5 hours, and thereafter fresh medium was added to a final volume of 40 ml. After 7 hours, actinomycin D was added to give a final concentration of 1 μg/ml. 24 hours after infection the cells were washed twice with ice-cold PBS. The cells were lysed in an ice-cold lysis buffer (50 mM Tris-HCl, pH 8.2, 0.14 M NaCl, 2 mM MgCl 2 , 5 mM DTT, 0. 2 (v/v) NP-40, 0- 2 Na deoxycholate and 10 mM vanadyl ribonucleoside complexes (New England Biolabs) ) . The lysates were centrifuged (4°C, min, 4000 rpm) and the supernatant was treated with proteinase K (250 μg/ml, final concentration) at 37°C for 30 minutes, extracted twice with phenol, chloroform and isoamyl alcohol (49:49:2) and once with chloroform and isoamyl alcohol (24:1). Intracellular RNA was obtained by precipitation with ethanol, purified via a 5-7 M CsCl cushion and enriched with HCV-specific RNA in a denaturing, isokinetic sucrose gradient of 5-29% (w/v) containing 50% formamide. The sucrose gradient was centrifuged at 200,000 x g for 16 hours in a Beckmann SW40 Ti rotor at 5°C (Moormann and Hulst, Virus Res. 11, 281-291 (1988)). Isolation of viral RNA from HCV Brescia virus was purified essentially as described by Moormann and Hulst (see above) . Confluent monolayers of SK-6 cells were infected with a MOI of 0.5. and were grown in 200 ml of medium at 37 β C for 48 hours. Cells were subsequently suspended in 50 ml of medium and freeze-dried twice. The cell suspension was clarified and the supernatant was brought onto 0.5 M NaCl and 10 m/v polyethylene glycol 6000 (BDH) . The virus was pelleted by centrifuging for 20 "minutes at 6000 x g at 4°C, dissolved in TNE (20 mM Tris-HCl, pH 7.2, 150 mM NaCl, 1 mM EDTA) and purified in a gradient of 30- 0 glycerol/(0~50 ) Na-K tartrate. The gradient fractions were titrated to determine whether virus was present in an IPMA. The fractions suitable for use were combined, and the virus was pelleted by cen¬ trifuging for 4 hours at 150,000 x g at β C. Viral RNA was extracted from the pellets with ice-cold lysis buffer and proteinase K, as described above. The viral RNA was recovered by precipitation with ethanol. Cloning of HCV RNA Enriched intracellular HCV RNA (approximately 1.5 μg HCV- -specific RNA) was incubated with 10 mM methylmercury hydroxide for 10 minutes at room temperature. The denatured RNA sample was incu¬ bated at 42 β C with 0 mM Tris-HCl, pH 7.8, 10 mM MgCl 2 , 70 mM KC1, 0.5 mM dATP, dCTP, dGTP and dTTP, 0.6 μg calf thymus oligonucleotide primers pd(N)6 (Pharmacia) and 3 0 units of Moloney murine leukaemia virus reverse transcriptase (Bethesda Research Laboratories) in a total volume of 100 μl. 20 mM EDTA was added after one hour; the reaction mixture was then extracted with phenol/chloroform, passed through a Sephadex G50 column and precipitated with ethanol. For synthesis of the second cDNA strand, DNA polymerase I (Boehringer) and RNAse H (Pharmacia) were used (Giibler and Hoffman, Gene 25., 263-269 (1983)). The double-stranded cDNA was incubated with T4 DNA polymerase (Pharmacia) in a reaction mixture which contained 0.05 mM deoxynucleotide-triphosphates and methylated with EcoRI methylase (New England Biolabs), EcoRI linkers (New England Biolabs) were added to the blunt ends of the cDNA with T4 DNA ligase (Pharmacia) . After digestion with EcoRI (New England Biolabs), cDNA was separated on a 0.8% agarose gel. Fragments of 1 kb to 4 kb were electroeluted, ligated in the EcoRI site of pUC 19 and used for transformation of the E. coli strain JM 83 (Vieira and Messing, Gene 19., 259-269 (1982)), as described by Hanahan, J.Mol.Biol. 166, 577"58θ (1983). Colony filters were hybridized with a "p-labelled single-stranded cDNA probe. The probe was reverse transcribed from HCV RNA which had been fractionated on a neutral agarose gel (Moormann and Hulst, see above) . Before use the single-stranded DNA probe was incubated with the cytoplasmic RNA from mock-infected SK-6 cells. The relationship between HCV-cDNA clones was determined by restriction enzyme analysis and by hybridization of Southern blots (Southern, J.Mol. Biol. 89_, 503"517 (1975)) of the digested DNA with nick-translated cDNA probes (Maniatis et al., "Molecular Cloning, A Laboratory Manual", Cold Spring Harbor Lab., Cold Spring Harbor, N.Y. 1982). Clones isolated from the cDNA library described above represent 90% of the HCV RNA. However, RNA sequences at the 5' end and 3' end were not cloned. In order to obtain cDNA clones of the 3' end, 20 μg viral RNA was polyadenylated in vitro with E. coli polyA-polymerase (Phar¬ macia) in 300 μl of a reaction mixture containing 50 mM Tris-HCl, pH 7.8, 2.5 mM MnCl 2 , 10 mM MgCl 2 , 250 mM NaCl, mM DTT, 800 μg/ml BSA, 180 units of RNasin (Promega Biotec) , 0.2 mM ATP, 4 μCi 3H-ATP and 2 units of polymerase. The reaction lasted 0 minutes at 37°C and was terminated by extraction with phenol (see above) . RNA adenylated with polyA was recovered with ethanol and synthesis of the first strand cDNA was primed with oligo-dT (12-18) (Pharmacia) . In order to obtain cDNA clones of the 5' end, a synthetic oligo- nucleotide which is complementary to the nucleotide sequence 308-347 (Fig. 1) was synthesized and used to prime first strand cDNA synthesis on template viral RNA. The conditions for the synthesis of the first and second strand of cDNA from the 5' and 3' ends were as described above. Double-stranded cDNA was incubated with T4 polymerase (see above), fractionated on a 0.8% agarose gel and ligated into the Smal site of pGEM-4 blue (Promega Biotec) . Ligated DNA was used for transformation of E. coli oH5-α (Hanahan, in DNA Cloning Vol. I; A Practical Approach. Chapter 6, pp. 109-135, 1985). Sequencing of cDNA clones Sequence analysis was largely carried out after subcloning of suitable restriction fragments in M13mpl8 and mpl9 (Yanisch— Perron et al., Gene 23_. 103-119. (1985)). The remaining section of the sequence was determined by direct sequence determination of double-stranded DNA of plasmid clones with a sequence kit based on T7 polymerase (Pharmacia) . In addition to the universal M13 primer of 15 nucleotide length (Boehringer) , sequencing was also carried out using oligonucleotide primers prepared on a cyclone DNA syn¬ thesizer (New Brunswick Scientific) . The nucleotide sequences of the subcloned HCV-specific restriction fragments were determined by means of the dideoxy chain termination method (Sanger et al., Proc. Natl. Acad. Sci. USA h , 5 -63, 54-67 (1977)) using Klenow DNA polymerase (Pharmacia) or reverse transcriptase (Life Sciences) (Sanger et al., see above; Smith, DNA Sequence Analysis by Primed Synthesis in "Methods in Enzymology", Vol. 6>, pp. 56O-58O, Academic Press, New York) and α-35s-dATP (Amersham) . The sequencing reactions were analysed on a 6% acrylamide gel with 8M urea. The data were analysed with a M24 computer from Olivetti using a PCGene sequence analysis program (Genofit, Geneva, Switzerland) and with a Macintosh SE computer from Apple using DNA "Strider" (Marck, Nucl. Acids Res. 16, 1829-1836 (1988)). Preparation of synthetic peptides and preparation of antipeptide sera in rabbits. Peptides were synthesized by known methods using a solid phase and BOP [benzotriazol-l-yloxy-tris(dimethylamino)phosρhonium hexafluorophosphate] reagent (Fournier et al.. Int.J.Peptide Protein Res. 21. 86-97 (1988)). Antisera against peptides were prepared by immunizing rabbits with 1 mg peptide conjugated with keyhole lympet haemocyanin (KLH) (KLH:peptide = 1:1) in complete Freund's adjuvant. The rabbits were bled 70 days after immunization. Analysis of antipeptide sera using Western blots The envelope protein El of HCV Brescia was purified by means of immunoaffinity, fractionated by sodium dodecylsulphate/polyacryl- amide gel electrophoresis and transferred to nitrocellulose paper (blots) as described by Wensvoort (thesis: Epitopes on Structural Proteins of Swine Fever (Hog cholera) Virus. University of Utrecht, pp. 71-85)- The blots were soaked for 30 minutes at 37 β C in PBS + O.85 M NaCl + 0.05% Tween 80 and 5% horse serum (blotting buffer), and were then incubated for 60 minutes at 37 β C with the antipeptide sera, diluted 1:10 in blotting buffer. After washing four times in PBS + 0.05% Tween 80, bound rabbit immunoglobulins were detected by a second incubation for 60 minutes at 37°C with a HRP0 conjugate ' directed against rabbit IgG and IgM. The blots were then washed as above and incubated with substrate solution as described by Wens¬ voort (see above). As positive controls, El blots were stained with concanavalin-A and with monoclonal antibody-HRPO conjugate 8 (Wens- voort, see above). Expression of El in cell culture. Monolayers of 3 x 10^ SK-6 cells were infected with HCV, M203, M204, M205, or M206 at a multiplicity of infection of 10. Cells were labeled with 35s from 6 to 18 hours after infection by incubation in 2 ml cysteine-free Eagle Basal medium, supplemented with glutamine, antibiotics, 5% dialysed foetal calf serum and 100 μCi of [35s]cysteine per ml. At 18 hours after infection cells and supernatants were harvested separately. Cells were lysed in 1 ml PBS-TDS (1% (v/v) Triton X-100, 0-5% ( /v) Na-deoxycholate, 0.1% (w/v) Na-dodecyl-sulphate in phosphate buffered saline). Lysates were sonicated and clarified by centrifugation for 10 min at 80,000 g. Supernatants were clarified by centrifugation for 2 hours at 80,000 g. One hundred microliter samples of lysates or 200 μl samples of supernatants were incubated for 16 hours at 4°C with 2 μl of a 1:1:1 mixture of El-specific MAbs 3. 6, and 8 (Wensvoort, J. Gen. Virol. JO. 2865 (1989))- These mixtures were then incubated for 2 hours at 4°C with 1 mg protein A sepharose and centrifuged for 1 min at 1000 g. The precipitated proteins were washed four times with PBS-TDS, incubated for 5 min at 100 β C in sample buffer (60 mM tris- HC1 pH 6.8, 2% Na-dodecyl sulphate, 10% glycerol, 5% 2-mercapto- ethanol, 0.01% bromophenol blue), and analysed by electrophoresis on 10% SDS-polyacrylamide gels. Description of the figures Fig. 1 Complete nucleotide sequence of the DNA copy of the hog cholera virus RNA of strain Brescia. The methionine residue encoded by nucleotides 361-363 is the first amino acid of the open reading frame which in the sequence extends from nucleotide 361-12054. The underlined areas indicate the sequence of synthetic peptides (lδ-mers) 1-3 which are used for preparation of peptide antisera in rabbits (see above). The vertical arrows indicate Leu at amino acid position 691, Phe at position 1031, Leu at position 1063 and Asp at position 1148 (see also Fig. 4). Fig- Western blot analysis of rabbit antisera, prepared against peptides 1-3 (see Fig. 1). The blots were analysed with (from left to right): concana- valin-A, monoclonal antibody 8, (Wensvoort, 198 . see above); anti¬ sera against peptides 1-3- The doublet gp54-51 forms the El glycoprotein fraction of HCV strain Brescia; the nature of gp31 has not yet been established. Fig. 3 Map of nucleotide 1-4440 of the sequence shown in Fig. 1 for the restriction enzymes AccI, EcoRI, EcoRV and Nael. The position in the sequence (Fig. 1) of the first nucleotide of a recognition site for a restriction enzyme is indicated. The sites of the El restriction fragments M203 (Nael-EcoRI) , M204 (Nael-AccI) , and M205 (Nael-EcoRV) in this sequence are under¬ lined. These fragments were subcloned in pHBdelta2,4 (see Fig. 4). Fig. 4 Construction of recombinants between HCV-E1 and pHBdelta2,4. The construction of pHBdelta2,4 has been described by Quint et al., J.Gen.Virol. 68, 523-534 (I987). The triangle indicates a deletion of approximately 2.05 kb in the unique short region of pHBdelta2,4 (Van Zijl, to be published). BamHI sites are indicated with a B. The sequence of gX has been described by Rea et al., J. Virol. 5£, 21-29 (I985). the sequence of gp50 by Petrovskis et al., J. Virol. 59_. 216-223 (1986) and the sequence of gp63 by Petrovskis et al., J. Virol. 6θ, 185-193 (1986). Recombinants were constructed by deletion of the restriction fragment Ball-Ndel from pHBdelta2,4. Said res¬ triction fragment comprises most of the coding region (I38O nucleo¬ tides) of gX (Rea et al., see above). The Ndel site was filled in with Klenow polymerase, and El sequences M203, M204 and M205, shown in Fig. 3. were inserted in pHBdelta2,4. At the 5' end all El sequences possess a blunt end (of Nael) starting with GG. This end is directly ligated at the blunt end, generated after Ball digestion, of pHB-delta2,4. The fusion at the 5' end leads to a Gly codon at the ligation site in all pHBdelta- 2,4-El constructs. The Leu codon downstream of this Gly codes for amino acid number 691 in the HCV sequence (Fig. 1). At the 3' end, stop codons were inserted in the constructs by use of specific oligonucleotide linkers. The codon lying directly up¬ stream of the stop codon in construct M203 codes for amino acid 1031 in the HCV sequence (Fig. 1). In constructs M204 and M205. these codons code for amino acids IO63 and 1148, respectively (Fig. 1). The starting points of the gX sequences alongside the El inserts at the 5 1 and 3' ends are indicated by arrows. The stop codons and sequences up to the gX starting points at the 3' ends of the constructs are derived from the oligonucleotide linkers used. The molecular cloning procedures were carried out as_ descrlr bed by Maniatis et al. (1982, see above). Fig. 5 Regeneration of pseudorabies (PRV) recombinant virus from overlapping subgenome PRV fragments (Van Zijl et al., J.Virol. 62, 2191-2195 (1988)). pMZ66 contains El fragment M203, pMZ65 contains El fragment M204 and pMZ63 contains El fragment M205. The positions of the transfected clones on the physical map of PRV strain NIA-3 (see 5a) are indicated by vertical bars (see b) . (a): physical map of NIA-3 (Quint et al., J.Gen.Virol. 68, 523-534, (1987)). The genome consists of a linear double-stranded DNA molecule which can be divided into a unique short region within inverted repeats (indicated by open rectangles) and a unique long region. The sites of BamHI, Hindlll and Kpnl are shown. (b) : series of five overlapping clones. The cosmid clones c-179. c-1 and c-443 have been described by Van Zijl et al., (see above). Clone pMZ64 contains the Bglll B fragment of strain 783 (Moormann et al.. Abstract 12th Int. Herpes Virus Workshop, p. 255 (1987)) in a plasmid vector. The Tk gene in strain 783 (pMZ64) has been inactivated by introduction of a deletion of 19 base pairs (Moormann et al., see above). The position of this deletion in pMZ64 is indicated by a triangle. The construction of clones pMZ63/65 and 66 is described in Fig. 4. Regeneration of PRV-E1 recombinants was carried out as described by Van Zijl et al. (see above) . Corresponding to the inserted El area (Figures 3 and 4) , the recombinant PRV-E1 strains were designated by PRV-M203, PRV-M204 and PRV-M205. The construction of PRV-M206 was identical to that of strains PRV-M203 to M205 inclusive; strain PRV-M206 is identical to said strains but lacks the HCV-specific El sequence. Fig. 6 Expression of the El protein in cell culture. Autoradiograph of an SDS-polyacrylamide gel, showing immunoprecipitates from lysates and supernatants (medium) of M203-. M204-, M205-, and M206-infected cells with a mixture of El-specific MAbs. Wild-type El (molecular mass of 1 to 5 kD) , precipitated from lysates of HCV-infected cells, was run in parallel. A 31"kD glycoprotein is always coprecipitated with El. Example The tests below were carried out to determine whether, as a result of vaccinating pigs with one of the three PRV constructs M203, M204 and M205 or with the PRV construct M206, the pigs formed neutralizing antibodies against pseudorabies virus and hog cholera virus and formed HCV-El-specific antibodies. It was furthermore determined whether vaccination of pigs with one of the three constructs PRV-M203, -M204 and -M205 leads to protection of these pigs against a virulent infection with hog cholera virus. The test animals used were four groups (A-D) comprising 10 week old SPF pigs which had no antibodies against HCV and BVDV. Each test group comprised four pigs. On day 0, the four pigs in group A were vaccinated intra¬ muscularly with lθ7-3 PFU of PRV-M203 (see Fig. 4), those in group B with lθ7 « 3 PFU of PRV-M204, those in group C with 10? • 3 PFU of PRV-M205, and those in group D with lθ7 « 3 PFU of PRV-M206. This vaccination was repeated on day 28. On day 42, all pigs in the four groups were infected intranasally with 100 DEQ doses of the virulent HCV Brescia strain 456610 (Terpstra and Wensvoort, Vet. Microbiol. 16, 123-128 (1988)). Serum blood samples were taken on days -3, 28, 42 and 63. The sera were examined in the serum neutralization test (SNT-PRV) (De Leeuw et al., Vet. Quarterly 4, 49~56 (1982)) to detect neutralizing antibodies against PRV. The sera were examined in the neutralizing peroxidase-linked assay (NPLA) (Terpstra et al., Vet. Microbiol. 9_, 113-120 (1984)) to detect neutralizing antibodies against HCV. The sera were investigated further in the complex trapping blocking ELISA (CTB) (Wensvoort et al., Vet. Microbiol. 17_, 129-140 (1988)) to detect HCV-El-specific antibodies. EDTA blood samples were taken on days 42, 45, 47, 49, 52 and 56, and 63- The number of erythrocytes, thrombocytes and leukocytes in these samples was counted. Furthermore, the leukocytes were isolated from these samples and the HCV titers of the leukocyte fractions were determined by titration of log-dilutions of the fractions in PK-15 cells. The cells were subsequently cultured for 4 days at 37 * 0 and with 5% C0 2 , after which the presence of virus was determined in an IPMA with monoclonal antibodies raised against HCV Brescia strain (Wensvoort et al.. Vet. Microbiol. 12, 101-108 (1986)). The rectal temperatures of all the pigs were measured daily and the pigs were examined daily for development of signs of disease. RESULTS Table 1 Antibody responses of groups A through D. Sera were taken on day -3, 28, 42, and 63, and tested in duplicate in the SNT-PRV, the NPLA, and the CTB. For the SNT-PRV en de NPLA , titers were expressed as the log of the reciprocal dilution that prevented the replication of 100-300 TCID50 virus. For the CTB, titers were expressed as the percentage inhibition of a standard negative signal (Wensvoort et al. Vet. Microbiol. 17_, 129-140 (1988)). * = <0.3, in the SNT-PRV these scores are considered negative; # = <0.8, in the NPLA these scores are considered negative; in the CTB a percentage inhibition of <30 is considered negative, while a percentage inhibition of >50 is considered positive. d = died Table 2 Hog cholera virus titers in leucocyte fractions of the pigs from group A, B, C, and D, after the pigs were inoculated on day 42 with 100 LDCQ of virulent hog cholera virus, strain Brescia 456610. Day 45 47 49 52 56 63 Group A (M203) Pig 1 0.72 0.88 < Pig 2 0.72 4.05 0.72 Pig 3 < < < Pig 4 0.72 < < Group B (M204) Pig 5 < pig 6 0.72 Pig 7 < pig 8 < Group C (M205) Pig 9 pig 10 Pig 11 Pig 12 Group D (M206) Pig 13 2.55 5-55 4.38 5. 05 pig 14 2.05 5.05 5-38 5.82 Pig 15 3.28 6.05 4.55 d pig 16 2.38 5.72 4.72 5- 55 < = no virus detected; titers are expressed as log TCID50. d = died; pigs 13, 14, and 16 were sacrificed "in extremis" on day 56 - = not applicable Means of clinical data of the pigs from group A, B, C, and D, after the pigs were inoculated on day 42 with 100 LD-ΓQ of virulent hog cholera virus, strain Brescia 456610. day 4ι 42 .43 44 45 -46 4 7 48 49 50 51 52 53 54 55 56 Group A (M203) nean temp.*39.0 38. 39.0 39.2 39.8 -40.5 4θ.l 39. ~ 39-6 39.1 38.8 38.8 38.9 38.8 39.0 38.8 (s.dev.) 0.1 0.1 0.1 0.-4 0. 7 0.9 0. 0.8 0.4 0.6 0.-4 0.2 0.0 0.2 0.2 0.2 4 .9 0 .3 400 55 8.9 0.1 Group B (M20-4) mean temp. 39.0 38.8 38.9 38.8 39.3 39.2 39.1 39.1 39.6 -40.0 39.2 39-1 39 * 0 38.8 39.2 39-1 (s.dev.) 0.1 0.2 0.2 0.2 0.1 0.2 0.1 0.2 0. -4 0.6 0.1 0.2 0.1 0.1 0.0 0.1 5. 1 0.2 353 19 8.4 0*9 Group C (M205) mean temp. 38.9 38*8 38.8 38.5 39-1 38.9 39*2 39*5 39*2 39*3 38.9 39*0 39*0 39 * 0 39*0 38.9 (s.dev.) 0.1 0.1 0.2 0.2 0.2 0.1 0.3 0.5 0.1 0.2 0.2 0.1 0.1 0.2 0.2 0.1 4.7 0.4 397 58 8.1 0.5 Group D (M206) mean temp. 39.O 38.9 39.O 39*4 40.8 40.9 4l.2 41.3 41 • 5 41.7 41.4 41.1 40.8 40.5 40.0 38.6 (s.dev.) 0.1 0.2 0.2 0.4 0.3 0.2 0.3 0.4 0.3 0.4 0.2 0.3 0.2 0. 7 0.6 0. 7 3.2 0.9 74 44 5-2 1.1 * mean temp.= The mean rectal temperature *C at approximately # mean θ mean. mean. CONCLUSION Pigs vaccinated with one of the three constructs PRV-M203, M204 and M205 develop neutralizing antibodies against PRV and HCV and antibodies specific for HCV-El. Pigs vaccinated with PRV-M206 develop neutralizing antibodies against PRV, but no neutralizing antibodies against HCV or antibodies specific for HCV-El (Table 1). Compound with PRV-M206, the sole additional genetic in¬ formation contained in the three PRV-HCV constructs is the genome sequence which codes for HCV-El or sections of HCV-El: this means that the pig sera directed against HCV-El can neutralize HCV. - Pigs vaccinated with PRV-M203 are partially protected against virulent HCV infection. Pigs vaccinated with the PRV-HCV constructs M204 or M205 are completely protected against virulent HCV infection. Pigs vaccinated with PRV-M206 are not protected against virulent HCV infection (Tables 2 and 3) • Pigs can therefore be pro¬ tected against virulent hog cholera virus infection by vaccination with a vaccine containing the genetic information for HCV-El or parts of HCV-El or by vaccination with a vaccine in which the genetic product of HCV-El or parts of HCV-El is used as the only polypeptide against which an antibody response to HCV is generated, or by vaccination with polypeptides which are derived in some way from the genetic information which codes for HCV-El or parts of HCV-El.

Claims: Claims 1. Method of providing protection against infection by a harmful organism, wherein a nucleotide sequence coding for an antigen related to the infection combined with a nucleotide sequence of a stop trans¬ fer region is used. 2. Method according to Claim 1, wherein the nucleotide sequence of the stop transfer region includes at least a part of the trans- membrane region of the stop transfer region. 3. Method according to Claim 2, wherein the nucleotide sequence of the stop transfer region further includes at least a part of the polar region of the stop transfer region. 4. Method according to any of Claims 1-3. wherein the infection is a pestivirus infection. 5. Method according to any of Claims 1-4, wherein the stop transfer region is a stop transfer region of a gene coding for a structural protein of a pestivirus. 6. Method according to any of Claims 1-5. wherein the nucleotide sequence is used for producing a vaccine. 7- Method of providing protection against infection by a harmful organism, wherein a nucleotide sequence related to the infectious organism or a derivative or a mutant of said sequence is used for constructing a transgenic animal. 8. Method according to Claim 7. wherein the infection is a pestivirus infection. 9. Nucleotide sequence comprising a part of the genome of an infectious organism and comprising at least a part of a heterologous stop transfer region. 10. Nucleotide sequence comprising a part of the genome of a pestivirus and comprising at least a part of a stop transfer region of a structural protein of the pestivirus. 11. Sequence according to Claim 10, wherein the structural protein is the envelope protein El. 12. Nucleotide sequence corresponding to at least part of the sequence (5') 1-3804 of the hog cholera virus Brescia strain. 13. Sequence according to Claim 12, comprising at least part of the sequence 2431-3804, and in particular 2431-3549- 14. Sequence according to Claim 12, comprising at least part of the sequence 1162-2430. 15. Nucleotide sequence of hog cholera virus, essentially as shown in Fig. 1 for the Brescia strain, or a partial sequence thereof. 16. Recombinant polynucleotide containing a sequence according to any of Claims 9-15- 17. Recombinant polynucleotide according to Claim 16, wherein the sequence is contained in a pseudo-rabies virus vector. 18. System containing a recombinant polynucleotide according to Claim 16 or 17 and capable of expressing the sequence. 19. Polypeptide encoded by a nucleotide sequence according to any of Claims 9-17- 20. Polypeptide according to Claim 18, corresponding to the amino acid sequence Leu 691 - Asp 1148 of the hog cholera virus Brescia strain. 21. Polypeptide according to Claim 19 or 20, wherein it is glycosylated. 22. Antibody raised against a polypeptide according to any of Claims 19-21. 23. Use of a polypeptide according to any of Claims 19-21 for protection against and/or diagnosis of an infection or for preparation of products therefor. 24. Vaccine for protection against an infection, containing the genetic information according to any of Claims 9-18. 25. Vaccine for protection against an infection, containing a polypeptide according to any of Claims 19-21 as antigen. 26. Vaccine according to Claim 24 or 25 for protection against a pestivirus, in particular hog cholera. 27. Vaccine for protection against a pestivirus infection, developed on the basis of a cDNA copy, and/or the plus strand transcipt thereof, of a pestivirus sequence. 28. Use of a nucleotide sequence according to any of Claims 9~l8 for diagnosis of an infection. 29. Oligonucleotide probe for diagnosis of a pestivirus infection which contains an oligonucleotide derived from the sequence according to any of Claims 10-15• 30. Diagnostic kit containing at least one oligonucleotide probe according to claim 29. 31. Diagnostic kit, in particular for serological differentia¬ tion between an animal which is protected against an infection by the method of Claim 6 or by the vaccine of any of Claims 24-27, and an infected animal, which kit contains at least a polypeptide encoded by the infectious organism and differing from the polypeptide encoded by the nucleotide sequence used for protecting the animal. 32. Diagnostic kit according to Claim 31 for diagnosing hog cholera, containing a polypeptide coded for by the sequence according to Claim 14. 33- Diagnostic kit containing at least one antibody according to Claim 22. 34. Transgenic mammal obtained by the method according to Claim 7 or 8. 35. Mammal treated with a vaccine according to any of Claims 24-27.

Inventors: MOORMAN ROBERTUS JACOBUS MARIE, WENSVOORT GERT, MOORMAN, ROBERTUS, JACOBUS, MARIE, WENSVOORT, GERT
Applicants: CENTRAAL DIERGENEESKUNDIG INST, CENTRAAL DIERGENEESKUNDIG INSTITUUT
Application year: 1990
Main classification: C12P21
IPC codes: A01K67, A61K38, A61K39, A61K48, A61P31, C07K14, C12N5, C12N15, C12P21, C12Q1, G01N33