Heparinase-producing microorganism belonging to the genus Bacillus, new heparinase and process for producing same

Abstract: The microorganism designated Bacillus sp . strain BH100 (FERM BP-2613 (FERM P-10408)) is disclosed. This strain is useful for the production of a novel form of extracellular heparinase.

Description: This invention relates to a biologically pure culture of a new microorganism belonging to the genus Bacillus characterized by the ability to degrade heparin and heparitin and by the production of extracellular heparinase. This invention further relates to a new extracellular heparinase and a process for producing the same. Heparinase is an enzyme which cleaves certain glycosidic linkages in heparin, a sulfated mucopolysaccharide having the major repeating unit: -4)-2-deoxy-2-sulfamino-α-D-glucopyranose-o-sulfate-(1-4)-α-L-idopyranosyluronic acid-2-sulfate-(1- . The products of this enzyme activity are chain-shortened fragments of heparin. Heparinase also cleaves heparitin (otherwise known as heparin monosulfate or heparan sulfate), a sulfated mucopolysaccharide having a chemical structure similar to that of heparin, producing chain-shortened fragments of heparitin. The substrate, heparin, is widely used as an anticoagulant drug and consequently heparinase has numerous applications in the study of heparin structure, investigation of the blood coagulation mechanism, and in bioassays for detection of heparin in body tissues and fluids. Heparinase also has use in the preparation of low molecular weight heparin fragments which have potential therapeutic value as anti-thrombotic or anti-tumour agents. Heparinase derived from microorganisms of the genus Bacillus is new. Previously, enzymes capable of degrading heparin have been detected only in cultures of Flavobacterium heparium, Flavobacterium sp., Bacteroides sp., Bacteroides heparinolyticus, Peptostreptococcus and Eubacterium. These heparinases are disclosed in Journal of Biochemistry [Vol. 233, p. 853 (1956)] Experientia [Vol. 41, p. 1541 (1985)] Matsumoto Dental School Journal (Japan) [Vol. 8, p. 15 (1982)] Journal of Applied and Environmental Microbiology [Vol. 46, p. 1252 (1983)] Journal of Clinical Microbiology [vol. 26, p. 1070 (1988)], Journal of the South African Veterinary Association [Vol. 53, p. 214 (1982)]. Conventional heparinases all have one or more disadvantages, such as high cost of enzyme production and recovery, and low stability during purification, storage and use, which limit their practical use. At present, only heparinase from Flavobacterium heparinum is commercially available. Conventional heparinases produced by bacteria of the genera Flavobacterium and Bacteroides are cell-bound enzymes that are not released into the culture medium. Consequently, recovery of such heparinase requires cell disruption which adds considerable cost to the purification of the enzymes. An extracellular heparinase which is released into the fermentation culture medium does not require cell disruption for recovery and so is advantageous to achieve less costly enzyme recovery and purification. Furthermore, conventional heparinases are rapidly and irreversibly inactivated at temperatures above 37°C. A more thermostable heparinase which retains activity at temperatures up to 50°C is advantageous because it exhibits greater stability during purification, storage and use at temperatures below 37°C and it can be used at even higher temperatures, up to 50°C, to achieve more rapid reaction rates. In accordance with one aspect of the invention there is provided a heparinase having the following physicochemical properties: (1) Optimum activity within the pH range: pH 7.2∼7.8 (2) Optimum activity within the temperature range: 45∼50°C (3) Activity stimulated by Ca²⁺ ions. In accordance with another aspect of the invention there is provided a biologically pure culture of a microorganism being a strain of genus Bacillus having the taxonomic properties hereafter given in Table 1. In accordance with yet another aspect of the invention there is provided a biologically pure culture of a microorganism as specified above having utility to produce heparinase extracellularly. In accordance with yet another aspect of the invention there is provided a process for the production of a heparinase as specified above wherein a microorganism as specified above is cultured in an aqeuous nutrient medium and is capable of producing said form of heparinase extracellularly and wherein said heparinase is accumulated in the culture medium, and the same is recovered. (1) Acquisition of Microorganism A large number of microorganisms were isolated from soils by selection for growth at 45°C in a liquid medium containing mineral salts, trace amounts of vitamins, and heparin as the major nutrient. From those samples which exhibited evidence of microbial growth after one week of cultivation, the microorganisms were isolated in biologically pure form and tested for production of heparinase having activity at 45°C. Accordingly, one bacterial isolate was discovered which produced the desired heparinase activity and which furthermore released the heparinase into the culture medium. This new heparinase-producing isolate was designated strain BH100. The taxonomic properties of strain BH100 were examined in accordance with methods described in Bergey's Manual of Systematic Bacteriology, Volume 2, and the strain was found to be Gram-positive, spore-forming, rod-shaped, facultatively anaerobic, motile, catalase-positive and had a growth temperature range of 20 to 55°C, from which it was clear that the strain was a microorganism belonging to the genus Bacillus . In comparison with known species of the genus Bacillus , the taxonomic properties of strain BH100 were found to resemble those of the species Bacillus circulans in some respects. However, strain BH100 differed from Bacillus circulans in several important properties, most notably, growth at 55°C, pH in VP-broth above 6.0, guanine plus cytosine content of DNA within the range 56-58%, and the ability to degrade heparin and heparitin. Accordingly, strain BH100 was judged to be a new species, different from known species belonging to the genus Bacillus . The present inventors deposited strain BH100 in the Fermentation Research Institute, Agency of Industrial Science and Technology of Japan where the strain was given the deposit number (FERM BP-2613 (FERM P-10408)). The taxonomic properties of this strain are given in Table 1. As a medium for culturing of strain BH100, an ordinary medium containing a carbon source, nitrogen source, and inorganic salts is used. As a carbon source, any of those which can be assimilated can be used, for example, D-glucose, maltose, D-xylose, sucrose, heparin, citrate, succinate, glutamate, tryptone, or peptone can be enumerated as typical examples. As a nitrogen source, various conventional materials can be used, for example, yeast extract, peptone, meat extract, corn steep liquor, amino acid solution, etc. or inorganic nitrogen such as ammonium sulfate, ammonium chloride, etc. can be enumerated as readily available sources. Furthermore, in addition to such carbon and nitrogen sources as above, it is possible to add various commonly used, for example, inorganic salts such as as magnesium sulfate, magnesium chloride, potassium phosphate, sodium phosphate, potassium chloride, calcium chloride, etc. Vitamins and other growth factors are not essential but it is possible to add such materials as folic acid, calcium pantothenate, biotin, riboflavin, thiamine, etc. It is further possible to add a gelling agent such as agar, gelatin, gellan gum, etc. if desired. The medium is adjusted to a final pH of 5.5 to 8.5, preferably pH 6.5 to 8.0, by addition of an acid or base as is appropriate. Heparinase synthesis by strain BH100 is induced by the presence of heparin in the culture medium. For production of heparinase , heparin is added to the culture medium at 0.05 to 10.0 grams per liter, preferably 1.0 to 2.0 grams per liter. As a specific example of a suitable medium, a liquid medium containing (per liter) 10 g of tryptone, 1.0 g of yeast extract, 3.5 g of K₂HPO₄, 2.0 g of MgCl₂·6H₂O, and 1.0 g of heparin and having the pH adjusted to pH 8.0 with NaOH can be enumerated. The strain BH100 is cultured preferably under aerobic conditions at 30 to 50°C. (2) Acquisition of the present enzyme The strain producing the present enzyme is cultured in any suitable medium, such as is described above, containing heparin as inducer at 0.05 to 10 grams per liter, preferably at 1.0 to 2.0 grams per liter, and incubated aerobically at 30 to 50°C for 12 to 72 hours. Isolation and purification of the present enzymes can be carried out, for example, as follows. Cells are removed from the liquid culture medium which contains most of the heparinase activity by centrifugation, microfiltration, or other conventional methods. At this stage, the crude heparinase can be concentrated using conventional methods such as precipitation with ammonium sulfate or acetone, dialysis with polyethylene glycol, or ultrafiltration. Alternatively, the crude heparinase can be further processed without such a concentration step. The crude heparinase activity is applied to chromatographic media such as usual ion-exchange and gel filtration media, and/or, fractionated by various other conventional methods well known to those skilled in the art of enzyme purification such as chromatofocusing, preparative isoelectofocusing, electophoresis, etc., thereby obtaining the present enzyme. A preferable method for acquiring the present enzyme can be exemplified as follows. Bacillus sp . strain BH100 is cultured in a suitable medium as indicated above, containing heparin as inducer at a concentration of 1 to 2 grams per liter, and incubated aerobically at 40 to 45°C for 36 to 40 hours. The obtained culture is centrifuged at 8000xg at 10°C for 30 minutes so as to remove the cells from the culture supernatant. Solid ammonium sulfate is added to the culture supernatant to 70% of saturation and the solution is allowed to stand at 5°C for 3 hours so as to form a precipitate containing the crude heparinase. The precipitate is collected by centrifugation at 8000xg at 10°C for 30 minutes and dissolved in 10 mM HEPES buffer pH 7.8. The crude heparinase solution is dialysed for 24 hours at 5°C against 100 volumes (2 changes) of 10 mM HEPES buffer pH 7.8. The dialysate is centrifuged at 12000xg at 10°C for 30 minutes and the precipitated protein is discarded. The crude heparinase solution is loaded onto a column of DEAE-TOYOPEARL equilibrated with 10 mM HEPES buffer pH 7.8 and eluted with the same buffer. The eluate is collected as a single active fraction and this enzyme solution is loaded onto a column of CELLULOFINE-SULFATE equilibrated with the same buffer. The enzyme is eluted with a linear concentration gradient of 0 to 0.3 M NaCl in 10 mM HEPES buffer, pH 7.8. The active fractions which are eluted at about 0.19 M NaCl are collected and concentrated by ultrafiltration using an Amicon PM10 membrane. Thus treated enzyme solution is subjected to gel filtration using a column of SHODEX WS-2003 equilibrated with 100 mM NaCl in 50 mM HEPES buffer pH 7.4 and eluted with the same buffer. The active fractions thus obtained are combined and contain only the purified heparinase as indicated by a single protein band upon examination by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. (3) Properties of the present enzyme The enzymological properties of the present enzyme produced according to the present process are as follows: (a) Action: Catalyses the eliminative cleavage of heparin and heparitin and thereby produces chain-shortened fragments of heparin and heparitin, respectively, which exhibit ultraviolate absorbance at 232 nm. (b) Substrate specificity: Cleaves heparin and heparitin but not chondroitin A, chondroitin B, chondroitin C, hyaluronic acid, dextran sulfate, and polygalacturonic acid. (c) Optimum pH and stable range: Optimum pH for activity is 7.2 to 7.8 as shown in Figure 1. Stable within the pH range of pH 7.0 to 8.0 under the condition of 24 hour retention of activity at 30°C. (d) Thermostability: At pH 7.4 and in the presence of 5.0 mM CaCl₂, about 100% of the enzymatic activity remains after 30 minutes heating at 45°C and about 10% of the activity remains after 3 hours heating at 45°C. Calcium ions are required for stability. (e) Optimum temperature range: Optimum temperature for activity in the presence of 5.0 mM CaCl₂ is 45°C (30 minute assay; Figure 2) or 50°C (10 minute assay), depending upon the duration of the assay period used. (f) Effect of inorganic ions: The enzymatic activity is increased by about 50% in the presence of 2.5 mM chloride salts of Ca²⁺, Mg²⁺ or Ba²⁺. The activity is increased by about 100% in the presence of an optimum concentration of 5 mM Ca²⁺. The activity is lowered in the presence of 0.5 mM chloride salts of Co²⁺, Zn²⁺, Cu²⁺, Ni²⁺ and Pb²⁺ by about 38%, 66%, 90% 80%, and 100%, respectively. Chloride salts of Fe²⁺, Mn²⁺ and Li²⁺ ions at 2.5 mM do not influence the activity. NaCl inhibits the activity to the extent of about 10%, 44%, 88% and 100% at concentrations of 30 mM, 100 mM, 200 mM, 300 mM respectively. (g) Molecular weight: The molecular weight of the present enzyme is about 120000 as estimated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis using a 4 to 20% linear gradient gel with reference to molecular weight standard proteins. Comparisons of physicochemical properties between the said enzyme and the conventionally known heparinase are shown in Table 2. Methods of measuring and indicating the activity of the present enzyme are as follows. (h) Toluidene Blue Metachromatic Assay: Reaction mixtures containing 20 µℓ of the present enzyme solution (suitably diluted), 80 µℓ of 50 mM HEPES buffer, pH, 7.4 and 20 µℓ of 100 ug per mℓ of heparin (sodium salt) are sealed to prevent evaporation and held at 45°C for 30 minutes. Then 20 µℓ of 0.025 mg/mℓ toluidene blue solution is added and the absorbance of the solution is determined at 620 nm. The total amount of heparin remaining in the reaction mixtures is calculated from their absorbance by reference to a series of standard solutions of known heparin concentration. One Unit of enzyme activity is taken as the amount required to degrade 1.0 mg of heparin per hour at 45°C. (i) Ultraviolet Absorbance Assay: Reaction mixtures containing 20 µℓ of the present enzyme (suitably diluted) and 50 µℓ of 10 mg/mℓ heparin in 50 mM HEPES buffer, pH 7.4, are held at 45°C for 30 minutes. Thereafeter, the reaction is discontinued by addition of 2.0 mℓ of 20 mM KCl-HCl solution, pH 2.0 and the absorbance of the solution is determined at 232 nm. One International Unit. (I.U.) of enzyme activity is taken as the amount of enzyme required to generate 1 micromole of double bonds per minute at 45°C, based on a molar extinction coefficient of 5100 cm⁻¹ M⁻¹ for the degradation products. The following examples are merely illustrative of the invention, and are not intended to limit the same. EXAMPLE 1 A newly discovered strain, designated Bacillus sp . strain BH100 (FERM BP-2613 (FERM P-10408)), was isolated from soil as follows. About 0.1 g of soil sample was added to 1.5 mℓ of medium which consisted of (per liter): 2.0 g of heparin, 0.35 g of K₂HPO₄, 0.27 g of NH₄Cl, 0.2 g of MgCl₂·6H₂O, 0.001 g of each of lysine, histidine, and methionine, 0.0025 mg of ferrous citrate, 0.1 mℓ of trace element solution [containing (per liter): 0.12 g of ZnSO₄, 0.5 g of MnSO₄, 0.13 g of H₃BO₃, 0.004 g of CuSO₄, 0.006 g of NA₂MoO₄, and 0.012 g of CoCl₂·6H₂O], and 0.1 mℓ of vitamin solution [containing (per liter): 10 mg each of folic acid and biotin, 25 mg each of riboflavin, thiamine, nicotine acid, calcium pantothenate and para-aminobenzoic acid, and 50 mg of pyridoxine hydrochloride]. The cultures were held in sterile 24-well microtiter trays, sealed with plastic wrap to minimize evaporation, at 45°C, without shaking. From those samples which exhibited evidence of microbial growth after one week of cultivation, the microorganisms were isolated in biologically pure form by repeated subculture of cells on a solid medium containing (per liter): 2.0 g of heparin, 0.1 g of K₂HPO₄, 1.0 g of MgCl₂·6H₂O and 8.0 g of gellan gum, at pH 8.0, with incubation at 45°C. EXAMPLE 2 The biologically pure isolates obtained as indicated in Example 1 were tested for production of heparinase activity by culturing the cells in 20 mℓ of liquid medium containing (per liter): 14 g of tryptone, 1.0 g of yeast extract, 3.5 g of K₂HPO₄, 2 g of MgCl₂, and 1.0 g of heparin, adjusted to pH 8.0 with NaOH. The cultures were incubated at 45°C, with rotary shaking at 65 rpm. After 72 hours of cultivation, the cells were collected by centrifugation at 8000xg for 20 minutes and the supernatant was tested for residual heparin by the Toluidene Blue Metachromatic Assay. In the culture containing Bacillus sp . strain BH100 (FERM BP-2613 (P-10408)), the amount of heparin remaining in the culture supernatant was determined to be zero mg per mℓ. Heparinase activity was assayed by the Toluidene Blue Metachromatic Assay at 45°C and the culture supernatant was found to contain 0.074 units of heparinase per mℓ. EXAMPLE 3 Bacillus sp . strain BH100 (FERM BP-2613 (P-10408)) was cultured in 20 ml of medium containing (per liter): 7.0 g of HEPES buffer, 2.0 g of yeast extract, 0.5 g of K₂HPO₄, 1.0 g of MgCl₂, 1.0 g of heparin, and 10 g of carbon source as indicated below, adjusted to pH 8.0 with NaOH. The cultures were incubated at 45°C with rotary shaking at 65 rpm. After 40 hours, 64 hours and 72 hours of cultivation, 1.0 mℓ samples were removed from each culture, the cells were collected by centrifugation, and the culture supernatants were tested for heparinase activity by the Toluidene Blue Metachromatic assay as indicated in Table 3: Carbon source Heparinase Activity (Units per mℓ) 40 h 64 h 72 h glutamate 0 0 0.080 proline 0.138 0.104 0.034 succinate 0.144 0.096 0.026 glycerol 0 0.042 0.042 glycolate 0 0.026 0.080 acetate 0.140 0.076 0.098 xylose 0 0.068 0.062 EXAMPLE 4 Induction of heparinase synthesis by Bacillus sp . strain BH100 (FERM BP-2613 (FERM P-10408)) was examined as follows. Strain BH100 was cultured in 20 mℓ of liquid medium containing (per liter): 10 g of tryptone, 1.0 g of yeast extract, 3.5 g of K₂HPO₄, 2.0 g of MgCl₂·6H₂O, and chondroitin A, chondroitin B, Chondroitin C, hyaluronic acid, polygalacturonic acid, dextran sulfate, glucosamine or glucuronic acid, each at 1 g per liter, or heparin at the concentration as indicated below. Cultures were incubated at 45°C with rotary shaking at 65 rpm. After 36 hours of cultivation, the cells were removed by centrifugation and the culture supernatant was further processed as follows. Solid ammonium sulfate was added to 70% of saturation and the solution was held at 5°C for 3 hours to form a precipitate. The precipitate was collected by centrifugation at 8000xg at 10°C for 30 minutes and was dissolved in 2.0 mℓ of 20 mM HEPES buffer, pH 7.4. This solution wa dialysed for 16 hours at 4°C in 4 liters of 20 mM HEPES pH 7.4, then heparinase activity was assayed at 45°C using the Ultraviolet Absorbance Assay method. The results are summarized in Table 4. Potential Inducer mg/mℓ Heparinase Activity (I.U./liter) none 0 heparin 0.1 0.32 heparin 0.2 1.39 heparin 0.5 3.10 heparin 1.0 5.45 heparin 2.0 8.33 heparin 5.0 5.66 others (as listed above) 0 As illustrated by the above data, heparinase synthesis by Bacillus sp . strain BH100 is induced by the presence of heparin in the growth medium. Production of the enzyme is not induced by the presence of chondroitins A, B or C, hyaluronic acid, polygalacturonic acid, dextran sulfate, glucosamine, or glucuronic acid. EXAMPLE 5 Purification of the heparinase is illustrated as follows. Bacillus sp . strain BH100 (FERM BP-2613 (FERM P-10408)) was cultured from a 5% inoculum in 6.0 liters of liquid medium containing (per liter): 10 g of tryptone, 1.0 g of yeast extract, 3.5 g of K₂HPO₄, 2.0 g of MgCl₂·6H₂O, and 2.0 g of heparin, adjusted to pH 7.4 with NaOH, and incubated aerobically at 40°C for 36 hours. The obtained culture was centrifuged at 8000xg at 10°C for 30 minutes so as to remove the cells form the culture supernatant. An estimated 14% of the total heparinase activity was cell-bound and discarded. Solid ammonium sulfate (2652 g) was added to the culture supernatant to attain 70% of saturation and the solution was held to stand at 5°C for 3 hours so as to form a precipitate containing the crude heparinase. The precipitate was collected by centrifugation at 8000xg at 10°C for 30 minutes and dissolved in 50 mℓ of 10 mM HEPES buffer pH 7.8. The crude heparinase solution was dialysed for 24 hours at 5°C against 10 liters (2 changes of 5 liters) of 10 mM HEPES buffer pH 7.8. The dialysate was centrifuged at 12000xg at 10°C for 30 minutes and the precipitated protein was discarded. Further purification was performed at room temperature, that is, at about 22°C. Heparinase activity was monitored at each step using the Ultraviolet Absorbance Assay. The crude heparinase solution was loaded onto a column of DEAE-TOYOPEARL equilibrated with 10 mM HEPES buffer pH 7.8 and eluted with the same buffer. The eluate was collected as a single active fraction and this enzyme solution was loaded onto a column of CELLULOFINE-SULFATE equilibrated with the same buffer. The enzyme was eluted with a linear concentration gradient of 0 to 0.3 M NaCl in 10 mM HEPES buffer, pH, 7.8. The active fractions which eluted at about 0.19 M NaCl were collected and concentrated by ultrafiltration using an Amicon PM10 membrane. Thus treated enzyme solution was subjected to gel filtration using a column of SHODEX WS-2003 equilibrated with 100 mM NaCl in 50 mM HEPES buffer pH 7.4 and eluted with the same buffer. The active fractions thus obtained were combined and found to contain only the purified heparinase as indicated by a single protein band upon examination by sodium dodecyl sulfatepolyacrylamide gel electrophoresis. The results of the purification are summarized as follows. Step Protein total, mg Activity total, I.U. Specific Activity I.U. per mg protein Supernatant 1080 16.3 0.015 Ammonium Sulfate,(Dialysate) 818 13.7 0.017 DEAE-TOYOPEARL 109 20.0 0.183 CELLULOFINE-SULFATE 1.53 4.28 2.80 SHODEX WS-2003 0.44 2.09 4.75 BRIEF DESCRIPTION OF THE DRAWINGS Fig. 1 is a graph showing the influence of pH on the activity of the present enzyme. Fig. 2 is a graph showing the influence of temperature on the activity of the present enzyme. COMPARISON OF KNOWN HEPARINASES Flavobacterium heparinum Bacteroides heparinolyticus Bacillus BH100 MECHANISM eliminase eliminase eliminase LOCATION cell-bound cell-bound extracellular Mr 43000 63000 120000 TEMP OPTIMUM 30 to 37 30 to 37 45 to 50 STABLE REACTION 1 hr at 30°C 1 hr at 37°C 1 hr at 45°C DENATURATION 5 min at 45°C 5 min at 45°C 5 min at 60°C pH OPTIMUM 6.5 6.5 7.5 ACTIVATION 0.1 M NaCl 1mM Fe²⁺ 5 mM Ca²⁺ Mg²⁺ Ba²⁺

Claims: Heparinase having the following physicochemical properties: (1) Optimum activity within the pH range: pH 7.2∼7.8 (2) Optimum activity within the temperature range: 45∼50°C (3) Activity stimulated by Ca²⁺ ions. A biologically pure culture of a microorganism being a strain of genus Bacillus having the taxonomic properties hereafter given: A biologically pure culture of a microorganism as claimed in claim 2 having utility to produce heparinase extracellularly. Process for production of a heparinase as specified in claim 1 wherein a microorganism as specified in claim 2 is cultured in an aqueous nutrient medium and is capable of producing said form of heparinase extracellularly and wherein said heparinase is accumulated in the culture medium, and the same is recovered. Process according to claim 4 wherein the microorganism used is Bacillus sp. BH 100 (FERM BP-2613 (FERM P-10408)).

Inventors: BELLAMY WAYNE ROBERT, HORIKOSHI KOUKI, BELLAMY, WAYNE ROBERT, HORIKOSHI, KOUKI
Applicants: JAPAN RES DEV CORP, RIKAGAKU KENKYUSHO, RESEARCH DEVELOPMENT CORPORATION OF JAPAN
Application year: 1989
Main classification: C12N9
IPC codes: C12N9, C12N1, C12R1