Method for producing clavulanic acid

Abstract: DNA sequences obtained from S. clavuligerus , recombinant vectors incorporating such sequences and hosts transformed with such vectors are disclosed. The DNA comprises one or more genes encoding one or more enzymes involved in the biosynthesis of clavulanic acid and may be used to improve the yield of clavulanic acid produced by clavulanic acid-producing organisms such as S. clavuligerus ATCC 27064.

Description: The present invention relates to DNA molecules, especially recombinant DNA molecules, and in particular to recombinant vectors for use in the transformation of a microbial host which contain inserted DNA fragments carrying one or more genes coding for enzymes involved in clavulanic acid biosynthesis. Clavulanic acid is a potent β-lactamase inhibitor produced by the mycelial bacterium Streptomyces clavuligerus (see Reading, C., and Cole, M., Antimicrobial Agents and Chemotherapy, 1977, 11 , 852-857) and is a compound of great clinical value, since it protects β-lactamase-labile β-lactam antibiotics from degradation. Methods for increasing the yield (titre) of clavulanic acid in fermentation processes are potentially, therefore, of considerable commercial importance. One approach to the problem of clavulanic acid yield improvement that has been envisaged involves the use of recombinant DNA techniques using S.clavuligerus as the host cell. In this connection, it was suggested that isolation of genes involved in clavulanic acid biosynthesis from the chromosomal DNA of S.clavuligerus would be a possible starting point (see C.R.Bailey et al, Biotechnology , 1984, 2 , 808-811). Hitherto, however, no DNA has been specifically identified as being of value for increasing clavulanic acid titre. Although several enzymes are believed to be involved in clavulanic acid biosynthesis, only the enzyme clavaminic acid synthase (or synthetase) has been characterised. Clavaminic acid synthase (hereinafter abbreviated to CAS) is a 2-oxoglutarate linked oxygenase which converts proclavaminic acid into clavaminic acid (these are intermediates in the clavulanic acid biosynthetic pathway). For further details see papers by S.W. Elson et al in J. Chem. Soc. Chem. Commun ., 1987, pages 1736, 1738, and 1739. See also European Patent Application Publication No. 0 213 914. In order to clearly define the invention reference is made to the accompanying drawings in which: Fig. 1 is a restriction map of DNA I Fig. 2 is a restriction map of DNA II Fig. 3 is a restriction map of DNA III Fig. 4 is a restriction map of seven restriction fragments derived from DNA III Fig. 5a is a restriction map of the recombinant plasmid pBROC 41A; Fig. 5b is a restriction map of the recombinant plasmid pBROC 41B; and Fig. 6 is a restriction map of the recombinant plasmid pBR0C 31. In the Figures the abbreviations Eco RI, Pst I etc. are conventional abbreviations for restriction endonucleases, and the approximate length in kilobases (Kb) of the DNA, as determined by sizing experiments carried out by agarose gel electrophoresis, is indicated. It should be understood that the Figures are not necessarily intended to show all the possible restriction sites present on the DNA fragments illustrated. In a first aspect, the present invention provides DNA comprising a DNA fragment derivable from S. clavuligerus and encoding at least one enzyme involved in clavulanic acid biosynthesis, characterised in that the DNA is approximately 60kb in length and has the configuration of restriction sites shown in DNA fragment (I) in Figure 1. It will be appreciated that the DNA (I) of the invention is not in its 'natural' state (i.e. as found in the chromosomal DNA of S. clavuligerus ) but has been purified and isolated to separate it from flanking DNA. The advantage of the invention is that DNA (I) comprises one or more genes involved in clavulanic acid biosynthesis which can be utilised, as hereinbelow described, to increase the yield of clavulanic acid produced by a clavulanic acid producing organism. A particular advantage is that the titre of clavulanic acid can be substantially increased in wild-type Streptomyces species, for example S. clavuligerus ATCC 27064, which naturally tend to produce only fairly low levels of clavulanic acid. Certain restriction fragments of the DNA (I) may also be utilised in the above manner provided they contain one or more intact genes involved in clavulanic acid biosynthesis. Accordingly, the DNA of the present invention may be DNA which is a subfragment of the DNA (I) shown in Figure 1, such as a subfragment which is identical with or is a subfragment of the DNA (III) shown in Figure 3. The subfragment according to the invention may be derived by cleaving the DNA (I) with appropriate restriction enzymes by known methods. Subfragments according to the invention may also be prepared by cleaving larger DNA subfragments with appropriate restriction enzymes or by ligating smaller subfragments using known methods. A preferred subfragment has the configuration of restriction sites shown in DNA (III) in Figure 3 or is a subfragment thereof. Particular subfragments of the DNA (III) include those shown in Figure 4, viz: a) Eco RI - Bam HI fragment (IV) ; b) Bcl I - Bcl I fragment (V) ; c) Bcl I - Bcl I fragment (VI) ; d) BglII - BgI II fragment (VII) ; e) Bgl II - Bgl II fragment (VIII); f) Bgl II - Bgl II fragment (IX); g) Sph I - Sph I fragment (X). By means of suitable experiments described hereinbelow it has been found that the DNA (I) shown in Figure 1 comprises a sequence encoding clavaminic acid synthase activity. Accordingly, in another aspect, the DNA of the present invention is DNA comprising a gene encoding a protein with clavaminic acid synthase activity. The gene for clavaminic acid synthase activity is located within the DNA fragment (IX) shown in Figure 4, and accordingly, DNA fragment (IX) is another preferred subfragment according to the invention. It will be understood that the invention encompasses DNA which may not have the precise configuration of restriction sites illustrated in Figures 1 to 4 if the said DNA has been derived by standard techniques including nucleotide deletion, substitution, addition or inversion fron the DNA according to any aspect of the invention described above. Preferably the DNA of this invention is derived from S. clavuligerus ATCC 27064 and Figures 1 to 4 show S. clavuligerus DNA. However the invention also encompasses DNA sequences, which though derivable from S. clavuligerus , are obtained from suitable clavulanic acid producing organisms other than S. clavuligerus , which sequences do not have the configuration of restriction sites illustrated in Figures 1-4 but which hybridise, preferably under conditions of high stringency, with the DNA (III) shown in Figure 3, or a subfragment thereof, and which code for an enzyme involved in clavulanic acid biosynthesis. Other known clavulanic acid producing organisms include S. jumonjinensis ATCC 29864 and S. katsurahamanus T-272. In a further aspect the invention provides recombinant DNA comprising the DNA of any aspect of the invention as hereinabove described. Preferably the recombinant DNA of the invention is comprised in a recombinant vector, more preferably a vector capable of transforming and undergoing autonomous replication in a clavulanic-acid producing organism or a vector from which insert DNA can be integrated into the chromosome of the clavulanic acid producing organism via homologous recombination. In one preferred aspect the recombinant vector is a high expression vector. The DNA according to any aspect of this invention may be introduced into any suitable vector by methods well known in the art, for example by direct combination of cohesive ends, homopolymer tailing, or by means of a linker or adaptor molecule. In one preferred aspect, the vector is derived from a Streptomycete . Specific examples of such vectors include the following (1) pIJ 913 (molecular weight 15.7 megadaltons), a low copy number vector described in Lydiate, D.J., et al.,Gene (1985), 35 , 223-235; (2) pIJ 702 (molecular weight 3.7 megadaltons), a high copy number vector described in Katz, E. et al , J. Gen. Microbiol (1983), 129 , 2703-2714. (3) pIJ 680 described by Hopwood et al (1985) Genetic Manipulation of Streptomyces. A Laboratory Manual. The John Innes Foundation. The vector may also be derived from a non-Streptomycete; for example the cosmid pTCF (Grosveld et al ., Nucleic Acids Research, 1982, 10 , 6715-6732) or the plasmid pAT 153 (Twigg, A.J. and Sherratt, D., Nature , 1980, 283 , 216-218). It will be appreciated that recombinant vectors prepared according to the above methods may contain the insert DNA in one of two possible orientations. Recombinant vectors containing both orientations are included within the scope of the invention. Thus, for example, when the insert DNA fragment has the configuration of restriction sites shown in (IV) (Figure 4) and the plasmid vector into which it is introduced is pIJ 913, the restriction maps of the resulting recombinant plasmids, referred to as pBROC 41A and pBROC 41B, are shown in Figures 5(a) and 5(b). Of these plasmids, pBROC 41B [Figure 5(b)] is preferred. A preferred recombinant vector which may be prepared by inserting the DNA (III) in Figure 3 into pAT 153 is shown in Figure 6 and is designated pBROC 31. Other preferred recombinant vectors according to the invention include those designated pWOR10 (constructed by ligating DNA fragment IX as hereinabove defined into the Bam HI site of pIJ680) and pBROC44 (constructed by ligating the same DNA fragment IX into the Bgl II site of pIJ702). In pWOR10 the unique Bcl I site in fragment IX is 2.45Kb from the unique Xho I site in the pIJ 680 vector. In pBROC44 the unique Bcl I site in fragment IX is 3Kb from the unique Bam HI site of the pIJ 702 vector. The insert DNA in one vector may be sub-cloned into another vector by standard procedures. For example, the recombinant plasmid pBROC 41B characterized as shown in Figure 5(b), may be obtained by: a) isolating the large Eco RI - Eco RI segment (14.35Kb) from pBROC 31 (Figure 6) by cleavage with Eco RI; and b) ligating the above Eco RI - Eco RI segment to pIJ 913, linearized by cleavage with Eco RI. To prepare the DNA and recombinant vectors of the invention, a random array of chromosomal DNA fragments may be generated by partial digestion of S.clavuligerus (ATCC 27064) DNA by any convenient restriction enzyme. The endonuclease Mbo I and its isoschizomers may be particularly suitable for this purpose. The DNA fragments may then be size-fractionated on a salt gradient and fractions containing fragments around 35-45Kb in length may be taken (see Grosveld et al , Nucleic Acids Research, 1982, 10 , 6715-6732). The DNA fragments may then be ligated by conventional 'shot-gun' methods to a cleaved vector to form a 'clone bank'. If desired, smaller fragments, for example of length 10Kb or more, may be obtained by size fractionation on an agarose gel using electrophoretic elution. These smaller DNA fragments may then be used to form a clone bank as described above. The vector used to form the clone bank may be a cosmid (able to carry large pieces of DNA), and for this purpose the cosmid pTCF (see Grosveld et al , loc. cit .) is particularly suitable. The plasmid PAT 153 may also advantageously be used in forming a clone bank to carry smaller pieces of DNA. A clone bank prepared as described above may then be 'probed' by conventional methods using as a hybridization probe a piece of DNA capable, when inserted into a suitable vector and transformed into a non-producer mutant strain of a clavulanic acid-producing host (a 'blocked' mutant) of restoring the ability of the host to synthesize clavulanic acid. It will be appreciated that the probe will be radiolabelled, for example with 32 P, and may either comprise the said piece of DNA itself or consist of a vector containing the said DNA provided that the said vector has no appreciable homology with the vector used to form the clone bank to be probed. Suitable probes may be isolated by the procedure described by C.R. Bailey et al . in Biotechnology , 1984, 2 , 808-811. A preferred probe is the plasmid pWOR1 described by C.R. Bailey et al . ( loc. cit .). To carry out the procedure described in Biotechnology , 1984, 2 , 808-811, it is necessary to have access to S. clavuligerus dclC8 , a mutant strain of S. clavuligerus which lacks the ability to produce clavulanic acid. The details relating to the deposition, derivation and characteristics of S. clavuligerus dclC8 are as follows. Deposition The strain S. clavuligerus dclC8 was deposited in the National Collection of Industrial and Marine Bacteria, Aberdeen, Scotland on 19th February, 1986, the deposit (accession number NCIB 12209) being made under the terms of the Budapest Treaty on the International Recognition of the Deposit of Micro-organisms for the Purposes of Patent Procedure. Derivation of S. clavuligerus NCIB 12209 Breaking out a sample of S. clavuligerus ATCC 27064 showed a variety of morphologies. Fourteen different types were recognised. One of these was isolated as S. clavuligerus SC2. Treatment of S. clavuligerus SC2 with 10µM of ethidium bromide was then carried out on petri dishes and the plates were incubated for 10 days. Survivors were assayed for clavulanic acid production. One isolate which produced no detectable clavulanic acid when assayed by HPLC (detection at 230mm) was designated as strain dclC8 and deposited under accession number NCIB 12209 as hereinabove described. S. clavuligerus NCIB 12209 forms a further aspect of the present invention. Taxonomy of S. clavuligerus NCIB 12209 The taxonomical and morphological properties of S. clavuligerus NCIB 12209 were found to be essentially similar to those of S. clavuligerus ATCC 27064, a description of which may be found in U.S. Patent 3,862,008 and also in Higgens, C.E. and Kastner, R.E., Int. J. Systematic Bacteriol . 1971, 21 , 326-331. After probing a clone bank prepared as described above with a suitable hybridization probe, for example pWOR1, insert DNA corresponding to, or embracing, the DNA of the invention may then be sub-cloned by standard methods, or cleaved as hereinbefore described. In the event that an inappropriate or too short piece of DNA is obtained from the probing step, the newly isolated DNA fragment may itself be used as a hybridization probe (after radio-labelling by conventional methods, e.g . nick-translation) to identify further positive colonies in the clone bank, the insert DNA of which may be analysed by restriction mapping and if necessary, modified by cleavage with appropriate restriction enzymes. The above process may be repeated until the required DNA according to the invention is isolated. In yet a further aspect the invention provides a host transformed by a recombinant vector of the invention. The host may be transformed by standard techniques. In one aspect the host may be a non-producer of clavulanic acid, for example E. coli or S. lividans . Such hosts may be of value in genetic manipulation procedures and can be advantageously used to express large quantities of enzymes involved in clavulanic acid biosynthesis, for example an enzyme having CAS activity. Preferred hosts, however, are those which are natural producers of clavulanic acid when cultured in an appropriate medium, or non-producing mutants thereof blocked in clavulanic acid biosynthesis which the DNA according to the invention can then repair so that clavulanic acid synthesis is restored and preferably enhanced. Preferred hosts of this type are Streptomycetes including S. clavuligerus ATCC 27064, S. jumonjinensis ATCC 29864 and S. katsurahamanus T-272 or are derived therefrom. The advantage of employing such hosts is that under appropriate conditions an increased titre of clavulanic acid can be obtained after transformation with a recombinant vector according to the invention. Accordingly the present invention further provides a method for producing clavulanic acid in a host which is naturally a producer of clavulanic acid or from a blocked non-producing mutant of a said host, which method comprises the steps of: (a) transforming the said host or said non-producing mutant thereof with a recombinant vector according to the invention; and (b) culturing the transformants so formed under appropriate conditions so that production of clavulanic acid takes place. General methods for culturing a clavulanic acid-producing organism so as to obtain clavulanic acid are given in U.K. Patent Specification No. 1,508,977. In the above method the host is preferably S. clavuligerus ATCC 27064, or is derived therefrom. Preferably the recombinant vector used in the above method is pWOR10 as hereinabove defined. The following examples illustrate the invention. Example 1 Construction of a library of S. clavuligerus ATCC 27064 DNA in the cosmid Vector pTCF S. clavuligerus ATCC 27064 chromosomal DNA was isolated as described in European Patent Application Publication No. 0 233 715. Three aliquots of 20 µg of chromosomal DNA were partially digested with Mbo I (0.5 units per µg of DNA) for 5 minutes, 10 minutes and 15 minutes under standard conditions. The three aliquots were pooled and fractionated on a salt (1.25M - 5M NaCl)/Tris EDTA gradient and centrifuged for 3 hours at 39K rpm in a SW40.1 Beckman rotor. Twelve fractions were collected and the isolated DNAs from fractions 5-9 yielded 10 µg Mbo I DNA fragments around 35 - 45kb in size. The preparation of pTCF vector arms was carried out according to Grosveld, F.G., Lund,T., Murray, E.J., Mellor, A.L., Dahl, H.H., Flavell, R.A., Nucleic Acids Research (1982), 10 , 6715-6732. S. clavuligerus DNA fragments and vector arms were ligated in a ratio of 5:3:3, the mix packaged and used in the transduction of E.coli ED8767 as described in Grosveld et al. (loc. cit.). This procedure gave 4 x 10 6 colonies per µg packaged DNA. Example 2 Preparation of DNA I. 5000 E. coli ED8767 colonies containing pTCF with S. clavuligerus ATCC 27064 DNA inserts were immobilised and lysed on nitrocellulose filters. The plasmid pWOR1 (Bailey, C.R. et al . ( loc. cit ,) was isolated, nick translated and used to probe the filters by standard colony hybridisation techniques. Two hybridising colonies were obtained which, when combined, contain the 60kb DNA I segment illustrated in Figure 1. Example 3 Construction of a library of S. clavuligerus ATCC 27064 DNA in pAT153 S. clavuligerus ATCC 27064 chromosomal DNA was isolated as described in European Patent Application Publication 0 233 715. 60 µg of S. clavuligerus ATCC 27064 DNA was partially digested with Mbo I and fractionated on an agarose gel. DNA was isolated from fractions containing fragments of >10kb in size by electrophoretic elution as described by Maniatis,T., Fritsch,E.F., Sambrook,J. (1982) Molecular Cloning; A Laboratory Manual (Cold Spring Harbor Laboratory). 10 µg of pAT153 (Twigg and Sherratt ( loc. cit .)) was digested with Bam HI and treated with calf intestinal alkaline phosphatase to remove terminal phosphate groups and prevent recircularisation. The vector and >10kb fragments of S. clavuligerus ATCC 27064 DNA were ligated together and used to transform E. coli DH1. Example 4 Preparation of DNA III 6000 E. coli DHI colonies containing PAT153 with S. clavuligerus ATCC 27064 inserts were immobilised and lysed on nitrocellulose filters. The 2.2kb Sph I - Bgl II insert fragment from pWOR1 [sites 3-4 in Figure 3 of Bailey et al ( loc. cit .)] was isolated, nick translated and used to probe the filters by standard colony hybridisation techniques. One hybridising colony was obtained which contains the 13.1kb DNA III fragment illustrated in Figure 3. Example 5 Enhancement of clavulanic acid titre in S. clavuligerus strain SC2 by the plasmid pWOR10 Plasmid pWOR10 was constructed by ligating the Bgl II- Bgl II fragment IX (Figure 4) into the Bam H1 site of pIJ680 (Hopwood et al .,, 1985 Genetic Manipulation of Streptomyces. A Laboratory Manual. The John Innes Foundation). Plasmid pWOR10 was transformed into S. clavuligerus SC2 (reisolate of wild type) by a method analogous to that described in C.R.Bailey et al ( loc cit .). Transformants were picked off and restreaked on M5D medium (Dextrin, 1.0%; K 2 HP0 4 , 0.1%; MgSO 4 , 0.1%; NaCl, 0.1%; (NH4) 2 SO4 0.1%; CaC03, 0.4%; Trace Elements (FeSO 4 , 0.0001%; MnCl 2 , 0.0001%; ZnSO4, 0.0001%),; Agar, 2.0%) containing 5µg/ml thiostrepton. Cells of each transformant were stabbed onto M5D and grown for 6 days at 26 o C. The bioassay plates were then overpoured with soft blood agar (Oxoid) containing Klebsiella aerogenes strain as described in Reading, C. and Cole, M. (1977) Antimicrob. Agents Chemother, 11 , 852-857, 4% tetrazolium salts and 5µg/ml penicillin G. After overnight incubation at 26 o C zones of inhibition were measured. Those transformants showing zones greater than the control culture were transferred to shake-flask culture for accurate titre assessment. Cells are inoculated into 25ml of a suitable seed medium as described in U.K. Patent Specification No. 1,508,977 and grown for 3 days at 26 o C with shaking. 1ml of seed culture is inoculated into a final stage medium as described in U.K. Patent Specification No. 1,508,977 and grown at 26 o C for four days. Samples of culture broth were withdrawn after three and four days growth and assayed for clavulanic acid productivity as described in Bird, A.E. et al (1982) Analyst, 107, 1241-1245 and Foulstone M., and Reading, C. (1982) Antimicrob Agents Chemother., 22 753-762. Results Of the 21 isolates tested, one gave enhanced titres compared to S.clavuligerus SC2 yielding up to 53% advantage in cultures grown in the absence of thiostrepton and 39% advantage in cultures grown in the presence of thiostrepton. In all cases autonomous pWOR10 was found to be present. Example 6 Transformation of S. lividans with pBROC44 pBROC 44 was prepared by ligating the Bgl II- Bgl II fragment IX (Figure 4) in to the Bgl II site of pIJ 702 (see Hopwood et al . loc. cit .) S. lividans spores were inoculated into 25ml of protoplast seed medium (tryptone soya broth (TSB) + 1% maltose) in a 250ml shake flask and incubated for 3 days at 30 o C with shaking. 1ml of seed culture was transferred to 25ml final stage protoplasting medium [comprising 15ml YEME (Hopwood et al ., loc. cit ) with 1% maltose plus 10ml TSB plus 0.5% glycine plus 1% maltose] in 250ml shake flask containing a coiled spring. Incubation was overnight (16h) at 30 o C. The culture was harvested in sterile centrifuge tubes and mycelium washed in 10.3% sucrose. The cell pellet was resuspended in 1.5ml lysozyme mix and incubated at 25 o C for 1 hour, mixing occasionally. Protoplast formation was monitored using a microscope. Protoplast buffer (PB) (4ml) (Hopwood et al .,, loc. cit .) was added and mixed and the cell suspension was then filtered through sterile cotton wool filters. The protoplast suspension was centrifuged, washed briefly in PB and finally resuspended in 2ml PB. Protoplast concentration was measured using a Thoma counting chamber. 4 x 10 9 protoplasts were placed in fresh centrifuge tube, 5ml of PB added and pelleted by centrifugation. Protoplasts were resuspended in approx. 400µl of PB. 5µl of ligation mix was added to the protoplast suspension and within 30 seconds 0.5ml transformation buffer (Hopwood et al . loc. cit ., page 246) was added. After 10 seconds 5ml of PB was added and the protoplasts were centrifuged. Protoplasts were resuspended in 1ml PB and dilutions made in PB down to 10 -3 . 0.1ml samples of each dilution were plated out onto regeneration medium R2YE; see Thompson, C.J., Ward, J.M. and Hopwood, D.A (1980) Nature , 286 , 525-527. Agar plates were incubated at 30 o C. After 20 hours plates were overpoured with 2ml soft nutrient agar containing 500µg/ml thiostrepton. Agar plates were incubated for a further 3 days. Thiostrepton resistant transformants were picked off regeneration plates and restreaked on fresh R2YE agar. After 3-4 days growth transformants were inoculated into seed medium containing 50µg/ml thiostrepton and grown with shaking for 2 days at 30 o C. Plasmid was isolated according to the method of Hopwood et al ( loc. cit ). The correct construct designated pBROC44 was confirmed by restriction endonuclease digestion as described by Maniatis et al ( loc. cit ) (1982). Example 7 The demonstration of clavaminic acid synthase activity in pBROC44-transformed S. lividans The experiments described below demonstrate the presence of clavaminic acid synthase (CAS) activity in S. lividans that had been transformed by pBROC44 (Example 6). Three cultures were examined: (i) S. lividans host; (ii) S. lividans containing pIJ702, and (iii) S. lividans containing pBROC44 (Example 6). Cultures (i) and (ii) acted as negative controls for (iii). Because the vector pIJ702 contains a locus for thiostrepton resistance, the two cultures containing this vector were grown in the presence of thiostrepton (50µg/ml). The host itself was grown without thiostrepton. The medium used was as follows: Difco yeast extract 3g) Difco bacto peptone 3g) Oxoid malt extract 3g) 1 litre H 2 O Glucose 10g) Sucrose 340g) and was supplemented after autoclaving with MgCl 2 and glycine to final concentrations of 5mM and 50mM, respectively. The medium was inoculated with a single agar plug from a spore plate, and cultures were grown in 250ml or 500ml sprung shake-flasks at 31°C. The mycelium was harvested by centrifugation after 48 hr. growth, and was sonicated (3 x 5 sec. bursts) to release intracellular enzymes in the same volume of 50mM TRIS HCl/10mM MgCl 2 /10mM KCl/10% glycerol/1mM phenylmethylsulphonyl fluoride (PMSF) /pH 7.5. To assay for CAS activity, the centrifuged sonicate (115µl) was incubated with Fe 2+ (15µl, 10mM), α-ketoglutarate (15µl, 10mM) and the substrate for CAS [5-amino-3-hydroxy-2-(2-oxoazetidin-1-yl)valerate; proclavaminic acid; as described in EP-A-O 213 914] (5µl, 5mg/ml) for 5 minutes at room temperature, followed by incubation with imidazole (37.5µl, 20%, pH 6.8) for 10 minutes, then detection of the derivatised product by HPLC using a 30cm Waters C18 column equilibriated in 0.1M NaH 2 PO 4 /6% MeOH/pH 3.2 at 2mls/min., detecting at 312 nm. Soft gel permeation chromatography was performed at 4 o C using a 2.6 x 45cm column of Ultrogel AcA 54 equilibrated in sonication buffer (see above) at 20mls/hr. Fractions were assayed for CAS activity as above. Protein assays were performed according to the method of Bradford (1976) Analytical Biochem. 72 , 248-254. Results Cultures of S. lividans alone, S. lividans containing the vector pIJ702, and S. lividans transformed with pBROC44 were grown for 48 hours to give an opaque broth. The mycelium of each culture was harvested and sonicated, and the centrifuged sonicates were assayed for CAS activity. HPLC data showed that the S. lividans transformed with pBROC44 gave rise to an HPLC peak with the following characteristics: (i) it co-elutes (2.5 mins) with the standard for clavaminic acid. (ii) it is absent from the two control cultures (S. lividans alone and S. lividans containing pIJ702 without the insert); (iii) it is absent when the pBROC44-transformed culture is assayed in the absence of either Fe 2+ , α-ketoglutarate or the substrate. This evidence shows that the pBROC44-transformed culture gives rise to CAS activity. The specific activity of the CAS purified from S. lividans /pBROC44 was found to be 0.0036 µmole/min/mg protein. This compares with values between 0.008 and 0.06 µmole/min/mg protein for CAS from S. clavuligerus ATCC 27064 (reisolate SC2). Although the specific activity of the cloned CAS is slightly less than that of native CAS, the data indicate that the enzyme is translated intact, and that pBROC44 contains the complete CAS gene.

Claims: Claims for the following Contracting States : AT, BE, CH, DE, FR, GB, GR, IT, LI, LU, NL, SE DNA comprising a DNA fragment derivable from S. clavuligerus and encoding at least one enzyme involved in clavulanic acid biosynthesis, characterised in that the DNA is approximately 60kb in length and has the configuration of restriction sites shown in DNA fragment (I) in Figure 1. A subfragment of the DNA of Claim 1 which subfragment is identical with or is a subfragment of the DNA fragment (III) shown in Figure 3. DNA according to claim 1 or 2 comprising a gene encoding a protein with clavaminic acid synthase activity. DNA as claimed in Claim 2 or Claim 3 in which the DNA has the configuration of restriction sites shown in DNA fragment (IX) in Figure 4. A DNA sequence according to claim 3 which hybridises to the DNA fragment (III) having the configuration of restriction sites shown in Figure 3, or a subfragment thereof, and which codes for an enzyme having clavaminic acid synthase activity DNA which has been derived by way of nucleotide deletion, substitution, insertion or inversion from a DNA sequence as claimed in any one of Claims 1 to 5. DNA according to any one of Claims 1 to 6 which is derived from S. clavuligerus. A recombinant vector comprising recombinant DNA as claimed in any one of claims 1 to 7. A vector according to Claim 8 which is a high expression vector. A host transformed with a vector as claimed in any one of Claim 8 or 9. A host as claimed in Claim 10 which is a Streptomycete or E.coli. A Streptomycete host as claimed in Claim 11 which is naturally a producer of clavulanic acid. A host as claimed in Claim 11 or Claim 12 which is, or is a mutant of, S. clavuligerus ATCC 27064. S. jumonjinensis ATCC 29864 or S. katsurahamanus T-272. A method for producing clavulanic acid in a host which is naturally a producer of clavulanic acid or from a blocked non-producing mutant of a said host, which method comprises the steps of: (a) transforming the said host or said non-producing mutant thereof with a vector as claimed in Claim 8 or 9; and (b) culturing the transformants so formed under appropriate conditions so that production of clavulanic acid takes place. A method as claimed in Claim 14 in which the transformants comprise a host as claimed in Claim 13. S. clavuligerus strain NCIB 12209. Claims for the following Contracting State : ES A process for transforming a host cell with a recombinant vector containing DNA comprising a DNA fragment derivable from S. clavuligerus and encoding at least one enzyme involved in clavulanic acid biosynthesis, characterised in that the DNA is approximately 60kb in length and has the configuration of restriction sites shown in DNA fragment (I) in Figure 1. A process according to Claim 1 in which the recombinant vector comprises a DNA subfragment which is identical with or is a subfragment of the DNA fragment (III) shown in Figure 3. A process according to claim 1 or 2 in which the recombinant vector contains DNA which comprises a gene encoding a protein with clavaminic acid synthase activity. A process according to Claim 2 or Claim 3 in which the recombinant vector comprises DNA which has the configuration of restriction sites shown in DNA fragment (IX) in Figure 4. A process according to Claim 3 in which the recombinant vector comprises DNA which hybridises to the DNA fragment (III) having the configuration of restriction sites shown in Figure 3, or a subfragment thereof, and which codes for an enzyme having clavaminic acid synthase activity A process according to any one of claims 1 to 5 in which the recombinant vector comprises DNA which has been derived by way of nucleotide deletion, substitution, insertion or inversion from a DNA sequence as defined in any one of Claims 1 to 5. A process according to any one of claims 1 to 6 in which the recombinant vector is a high expression vector. A process according to any one of claims 1 to 7 in which the host is a Streptomycete or E. coli. A process according to claim 8 in which the Streptomycete host is naturally a producer of clavulanic acid. A process according to claim 8 or 9 in which the Streptomycete host is, or is a mutant of, S. clavuligerus ATCC 27064, S. jumonjinensis ATCC 29864 or S. katsurahamanus T-272. A method for producing clavulanic acid in a host which is naturally a producer of clavulanic acid or from a blocked non-producing mutant of a said host, which method comprises the steps of: (a) transforming the said host or said non-producing mutant thereof by a process as claimed in any one of Claims 1 to 7; and (b) culturing the transformants so formed under appropriate conditions so that production of clavulanic acid takes place. A method as claimed in Claim 11 in which the transformants comprise a Streptomycete host which is, or is a mutant of, S. clavuligerus ATCC 27064, S. jumonjinensis ATCC 29864 or S. katsurahamanus T-272.

Inventors: EARL ALISON JANE, HODGSON JOHN EDWARD, NORMANSELL IAN D, EARL, ALISON JANE, HODGSON, JOHN EDWARD, NORMANSELL, IAN, D., EARL, ALISON JANE BEECHAM PHARMACEUTICALS, HODGSON, JOHN EDWARD BEECHAM PHARMACEUTICALS
Applicants: BEECHAM GROUP PLC
Application year: 1989
Main classification: C12N15
IPC codes: C12N1, C12P17, C12R1, C12N15