SELECTIVE INHIBITION OF GENE EXPRESSION BY PHOTOACTIVATABLE OLIGONUCLEOTIDES

Abstract: The method of inhibiting the function of targeted DNA in a viable cell comprising administering to a viable cell containing targeted DNA a therapeutically effective amount of a photoactivatable composition comprising the UVA irradiation product of a compound that has two photoactivatable functional groups, and an oligonucleotide of DNA whose sequence of bases (a) contains at least one TA or AT sequence and (b) is substantially complementary to a segment of cellular DNA of said targeted DNA in said cell, and irradiating said cell with UVA light.

Description: SELECTIVE INHIBITION OF GENE EXPRESSION BY PHOTOACTIVATABLE OLIGONUCLEOTIDES Cross Reference to Related Applications This application is a continuation-in-part application of copending U.S. Application Serial No. 146,571 filed January 21, 1988. Background of the Invention The present invention relates to photoactivatable therapeutic compounds and compositions, and methods of using said compounds and compositions to inhibit the function and/or expression of targeted DNA. More particularly, the invention disclosed herein relates to the therapeutic uses of photoaσtivatable therapeutic compositions σomprising UVA (ultraviolet A light) irradiation produσts of nuσleotide bases (the oligonucleotides) having predetermined sequences, and compounds having two photoactivatable functional groups and compounds are reaσtable with at least one base of the oligonucleotides ' under UVA irradiation conditions. Psoralen compounds are particularly useful as the difunctional compounds in the practiσe of this invention. The σo position is administered to viable σells, preferably in vivo. The σells are thereafter exposed to UVA radiation. This results in inactivated or "turned-off" genes in the cell which have been targeted by the predetermined sequence of the oligonucleotide in the cells. The oligonucleotide used to prepare the photoactivatable therapeutic material contains a base sequence segment that is complementary to a segment of the "sense" strand or "antisense" DNA strand of a targeted gene. In the preparation of the photoaσtivatable therapeutiσ material, it is believed that the oligonucleotide reacts with a photoactivatable moiety of the difunctional compound upon UVA irradiation to form a monoadduσt, and upon cellular administration and further UVA irradiation, the photoaσtivatable therapeutic σomposition σrosslinks in situ to the complementary segment of DNA in the targeted gene. Disclosed herein are photoactivatable therapeutic drugs whiσh are believed to be σhi eriσ moleσules having a photoactivatable moiety and an oligonuoleotide moiety, for example, photoaσtivatable psoralen monoadducts of oligonucleotides; methods for selectively inhibiting DNA function, for example, irradiating the psoralen- oligonuσleotide monoadducts in viable cells with UVA; and methods for treating diseases comprising administration of the photoactivatable therapeutic materials of the present invention to targeted tissue, such as skin, followed by localized UVA irradiation of the site. Phototherapeutic techniques have been known since biblical times. The Egyptians ingested the leaves of a weed (ammi ajus) that grew by the Nile and then exposed themselves to sunlight to treat depigmented patches of skin (vitiligo) . The active constituent of the ammi majus plant, isolated and σharaσterized in 1947, is a derivative of psoralen, 8-methoxypsoralen (8-MOP) . Lerner and associates, in 1953, established that purified 8-MOP could be administered safely to humans and photosensitized 8-MOP was efficaσious at low doses in the management of vitiligo. The work by Lerner and associates created great interest and initiated the modern era of therapeutic photopharmacology, partiσularly in the field of dermatology. Subsequent researσh demonstrated that UVA irradiated psoralen derivatives (furoσoumarins) , such as 8-MOP, react with DNA. The therapeutic effects of photoactivated psoralens resulted from their photoreaction with bases in the two complementary strands of DNA. Phototherapies that have been developed thus far using derivatives of psoralen, " such as 8-MOP, have involved UVA light irradiation of skin after topical application or oral ingestion of the psoralen derivative and, more recently, extracorporeal irradiation of diseased blood. Two of the earliest phototherapies were the treatment of vitiligo and psoriasis with psoralen and UVA. A more recent development has been the treatment of the leukemic phase of cutaneous T-cell lymphoma (CTCL) with psoralen and UVA. After oral administration of 8-MOP, a patient's blood is separated into three fraσtions by leukophoresis: erythrocytes, leukocytes and plasma. The leukocytes and plasma are combined and passed through a plastic cassette in which they are irradiated as a thin (1 mm) layer. "Treatment of Cutaneous T-Cell Lymphoma by Extracorporeal Photochemotherapy", Edelson, et al., Vol. 316, No. 6, The New England Jour. Med. , pp. 297-303, February 5, 1987. The psoralen derivative, 8-MOP (I) , is a naturally ocσurring triσyclic aro atiσ σompound whose planar structure facilitates intercalation between nucleiσ acid base pairs in DNA. When activated with UVA light (320-400 nm) , psoralens reaσt with pyrimidine bases, preferentially with thymine, in σellular DNA. The preference for thy ine over other nucleotide bases is about 20:1. Psoralens are polyfunctional reagents whiσh form three distinσt types of photoadduσts with DNA: two monoaddition produσts and one cross-linked product. The monoadducts are either 3,4-"pyrone-side" cyσlobutyl adduσts of psoralen with the 5,6 carbons of thymine (such as illustrated for thymine above, II), or 4' ,5 Λ -"furan-side" cyσlobutyl adducts of psoralen with thymine (suσh as illustrated for thymine above, III) . The 3,4-monoadduct of psoralen (II) has only a weak absorption band near 300 nm and therefore only weakly absorbs UVA light. The 4 ' , 5 '-monoadduct of psoralen has an intense absorption band near 330 nm and thus is more readily capable of absorbing a second UVA photon. The second photon photoactivates the 3,4-pyrone ring leading to a second reaction with another thymine base (such as illustrated for thymine above, IV) on the opposite DNA strand thereby producing crosslinked DNA strands. In other words a psoralen acts to crosslink DNA strands by reacting with thymine bases in DNA strands. The 4',5'- monoadduσt absorbs another UVA photon. Thus, σrosslink formation of DNA is a two-photon proσess in whiσh the absorption of the first photon leads to the formation of the 4',5'-monoadduct of psoralen to DNA, and the absorption of the second photon of UVA photoactivates the 3,4-pyrone ring of psoralen which subsequently adds to another thymine on the opposite DNA strand to give the σrosslinked DNA. Base pairing between complementary nucleiσ acid strands provides hydrophobic sites which are exquisitely suited for ocσupation by nonpolar psoralen moleσules. Photoaσtivation of the bound and oriented psoralen moieties promotes the formation of psoralen photoadducts with pyri idine bases (primarily thymine) in DNA. As noted above, possible reaction products include monoaddition adducts (monoadduσts) and one diadduσt or σrosslink. Several factors affeσt the photoσondensation process. The ability of a partiσular psoralen to interaσt with DNA depends on its intrinsiσ thermodynamiσ properties whiσh are related to the nature of the substituents on the core psoralen moleσule. The psoralen partitions itself between the aqueous environment surrounding the DNA and the hydrophobiσ sites between base pairs. The distribution can be shifted towards more base pair interσalation by a) lowering the temperature, b) increasing the salt concentration of the reaction buffer, and σ) altering substituents on the psoralen core (e.g., 4 / -aminomethyl-4,5 , ,8-trimethylpsoralen (AMT) in place of 8-MOP) . In the absence of base pairs the yield of psoralen photoadducts is reduced, and in the case of 8-MDP the yield is reduced by at least two orders of magnitude. Therefore base paired strands of DNA are used in the preferred method of produσing the monoadduσts of this invention. To control the formation of monoadducts two strategies have been used. First, by irradiating psoralen-double stranded DNA solutions with wavelengths of UV light greater than 390 nm, monoadducts are virtually the only photoadducts formed. Second, by intentionally incorporating a mismatched base in the AT region of the oligonucleotide in the strand complementary to the target strand, monoadducts alone are produced regardless of which UVA wavelength is used for irradiation. For example, structure (V) represents a matched base pair, and structure (VI) represents a mismatched base pair wherein the mismatched complementary strand has an A in place of the complementary base T, thereby inhibiting psoralen from crosslinking between T bases in the mismatσhed strands. GAGTATGAG (V) CATAC GAGTATGAG (VI) CAAAC By intentionally inσorporating a mismatched base in the complementary strand, crosslink formation is blocked. Following irradiation, the mixture containing the monoadduct oligonucleotide is subject to denaturation to separate the unreacted complementary DNA strand from the oligonucleotide-psoralen monoadduct strand. Preliminary results indicate that monoadducts form with similar efficiencies when 8-MOP plus ds-DNA, either perfectly matched or σontaining a single mis-matσhed base, are irradiated with 400 nm light. Phototherapies of the prior art involve the administration of a derivative of psoralen, for example 8-MOP, and subsequent UVA irradiation to produσe monoadduσts and σrosslinks in σomplementary strands of DNA in irradiated σells that σontain the 8-MOP. However, administration of a psoralen compound by itself is not specifiσ for any particular locus of the DNA contained in the cells, and subsequent UVA irradiation causes the formation of monoadducts and crosslinks randomly throughout the cellular DNA. One of the objects of the present invention is to target a particular nucleotide sequence in the cellular gene for photo-σrosslinking with a monoadduct of a predetermined sequence of oligonucleotides and a compound that has at least two photoactivatable functional groups, which compound is reactable with at least one base of the oligonucleotide under UVA irradiation conditions. The result of such crosslinking reaσtion is that the gene containing the reaction product is turned off, i.e. , the σrosslinked DNA is inhibited from replicating and expressing the polypeptide for which it codes. Thus, at least one targeted segment of DNA of an entire genome is selectively modified by a crosslink in that gene, or some other DNA segment. Other genomic loci are therefore spared the effeσts of the .photoactivated σompound, such as psoralen. Oligo ers complementary to a segment of one strand of DNA in the targeted gene, which are capable of locating and hybridizing with the targeted segment, were designed as the means of delivering photoactivatable σompounds, suσh as the psoralen-oligonuσleotide adduσt, to a speσifiσ nucleotide sequence in the cellular gene prior to UVA irradiation and crosslink formation. Although we do not wish to be bound by any theory by which inactivation of a targeted gene occurs, we believe that a photoactivated reaction ocσurs in vivo resulting in a gene or genes that are inaσtivated or "turned off". Thus, the therapeutiσ materials of this invention are referred to as photoactivatable because their therapeutic effects are initiated by UVA. It is believed that in the initial reaction, in vitro, a psoralen molecule conjugates to an oligonucleotide to form the 4',5'-monoadduct of the psoralen and the oligonucleotide. The psoralen-oligonuσleotide monoadduσts of the present invention are administered to viable σells or tissue, such as by injection, or topical or intralesional application to the skin of animals, and are transported or otherwise caused to enter cells. We theorize that in the cell, the psoralen-oligonucleotide adduσt hybridizes with the s ' peσifiσ or σomplementary segment of DNA in the targeted DNA sequence. Subsequent iji situ UVA irradiation of the hybridized photoactivatable psoralen-oligonucleotide material causes the psoralen- oligonucleotide material to react with or σrosslink to the complementary strand to whiσh it is hybridized and thereby inaσtivates the targeted DNA sequence. Once the DNA sequence of a gene is known, or once the amino acid sequence of a polypeptide for which the gene σodes are known, specific oligonucleotide sequences can be constructed by methods known in the art. The specifiσ oligonuσleotide sequenσe that is σonstruσted should be σomplementary to at least a segment of DNA of the gene that is to be turned off. Therefore, any known gene locus containing a TA sequence or AT sequence would be a potential target for the phototherapeutic materials of this invention because the psoralen moiety of the monoadduct preferentially reacts with thymine bases, both in the oligonucleotide and in the cellular DNA. The compositions of the present invention comprise photoaσtivatable oligonucleotides, e.g., the 4',5'- monoadduσts of a psoralen σompound, with speσifiσ, predetermined oligonucleotides that contain at least a TA or AT sequence and desirably a TAT or ATA sequence. These chimeriσ 4',5'-monoadduσt σompounds are believed to be formed after UVA irradiation of a mixture of a psoralen and a oligonuoleotide of a predetermined sequence. The 4',5'-monoadduct of the psoralen may be separated from the reaction mixture that may contain other photoadduσts produced by this first irradiation, as well as unreacted materials. Other compounds containing at least two photoactivatable functional groups, which compounds are reaσtable with at least one base of the Oligonucleotide under UVA irradiation conditions and therefore are usable in the therapeutic treatments described herein, inσlude: N,N'-alkylene(C-l to C-15)-bis-malei ides (e.g., N,N'- tetramethylene- is-malei ide) ; N-H or N-alkyl(C-l or C- 8)- furanoσarbostyrils (e.g., 7H-furano[3,2- g]quinolone-2) ; furanoσhromones (e.g., 7H-furano [3,2- g] [l]benzopyran-5-one) ; and alkenyl(C-3 to C- 10)oxycou arins (e.g., 7-allyloxycoumarin) . The oligonucleotide moiety of the monoadduct is designed to hybridize to a segment of DNA of the targeted gene that contains a thymine base within the complementary sequence of the DNA. Thus, the useful irradiated product contains a psoralen 4',5'-monoadduct at a thymine site in the predetermined sequence of the oligonucleotide. The 4',5'-monoadduct is σapable of hybridizing with and thereafter photoreaσting with a complementary DNA sequence in a targeted gene. Further, oligodeoxyribonucleotide- and oligodeoxyribonucleoside-alkylphosphonates complementary to selected sequences in targeted genes, are within the meaning of oligonucleotides or oligomers as used herein for the practiσe of the disσlosed invention. Oligomers of oligodeoxyribonuσleoside-lower(C-l to C- 3)alkylphosphonates are nonioniσ nuσleiσ aσid analogues that contain a neutral alkylphosphonate linkage that replaces the negatively charged phosphodiester internucleotide bond normally found in nucleic aσids. The phosphonate linkage is resistant to hydrolysis by nuσleases and therefore the nonioniσ oligonuσleotides are able to penetrate σell walls. The invention σontemplates that all or some of the internucleotide phosphates may be replaced with alkyl phosphonates. Selective replacement of the internucleotide phosphates with an alkyl (e.g., methyl) phosphonate to form a "hybrid" molecule has been found to be particularly advantageous in suppressing the activity of nucleolytic enzymes located in the skin toward these modified oligonucleotides. Signifiσantly lesser σoncentration of oligonucleotide having a hybrid internucleotide linkage may be needed to achieve the same cellular effect as compared to completely substituted oligonuσleotides. The oligonucleotides used in this invention comprise predetermined sequences of DNA bases ranging in size from about 8 bases up to about 30 bases. Less than 8 bases in the sequence may be used as the predetermined sequence, however, the degree of uniqueness decreases rapidly with decreasing length thereby greatly reduσing the potential speσifiσity of the psoralen- oligonuσleotide monoadduct for a targeted gene. In other words, the psoralen-oligonucleotide monoadduct may interact with other genes (genes not intended as the target gene) and cause undesirable inactivation of such other genes ' . On the other hand predetermined oligonucleotide sequences greater than about 30 bases may demand suσh a high degree of ho ology for recognition and hybridization of its complementary segment in the gene to be targeted, that it may prevent practical application of this invention. In other words, the time that may be required for hybridization of the longer predetermined oligonucleotide sequences to the complementary DNA segments of the targeted gene may render this process ineffective as a practiσal matter. Moreover, the transport aσross cell walls of 4',5'- psoralen-olignucleotide monoadduσts having a long predetermined oligonucleotide sequence may be retarded or even inhibited. With respect to the predetermined oligonucleotide sequence, the sequence must contain at least a thymine- adenine or adenine-thymine (TA or AT) dinucleotide sequence within the oligonucleotide. In other words, the predetermined sequence is selected from a σomplementary segment of DNA of the gene to ' be targeted that σontains an AT or TA dinuσleotide sequence. • Preferably, the predetermined oligonuoleotide sequence that is selected should contain multiple TA or AT sequences within the predetermined sequenσe. For example, TAT or ATA, and TATA or ATAT are preferred. It is also possible, but less desirable, for a cytosine to replace a thymine in the oligonucleotide or the target gene. Acσordingly, the predetermined sequenσe that is selected and has, for example 10 bases, may contain a TATA sequence and 6 additional bases. For example, in the gene for T3 (T σell reσeptor) , the sequenσe 5'- GGAATATAGG-3' is found and it is appreciated that the seleσted sequenσe contains the desirable ATATA sequence. That 10 base sequence may be selected as the predetermined complimentary oligonucleotide sequence for use in this invention. In this example, the complementary oligonucleotide sequence normally is 5'- CCTATATTCC-3' . The oligonucleotide sequence may be prepared by techniques well known in the art. For example, the oligonucleotide sequence may be prepared by solid phase synthesis in a DNA synthesizer, or less preferred, the σomplex teσhnique .of reverse transσriptase may be used. In order to prepare the psoralen-oligonuσleotide monoadduct, a buffered (pH 7.4) aqueous solution of psoralen, 0.05-0.2 mg/ l, is prepared. For each ml of psoralen solution there is added about 10-50 micrograms of the predetermined oligonuoleotide at a concentration of about 0.01-0.05 mM. Thereafter the solution is irradiated with long wavelength UVA light (390-410 nm) from a monochromator for about 1-5 hours for eaσh ml of psoralen-oligonuσleotide solution. Larger solutions may be used if one irradiates for longer periods of time. In place of a UV lamp, one may use an incandesσent or special fluorescent lamp. A UV lamp could be used together with a glass filter that eliminates the UVA wavelength that cause the crosslinking reaction, namely 320-370 nm. The method of the present invention comprises administering to viable cells a therapeutically effective amount of the photoactivatable oligonucleotide, such as the 4' ,5'-psoralen- oligonucleotide monoadduct. Hybridization of the oligonucleotide moiety to its complementary DNA genetic loσus in the σell is believed to occur and the cell is then irradiated with UVA light. The hybridized 4',5'- psoralen-oligonucleotide monoadduσt σrosslinks to the complementary DNA sequence within the targeted gene. Photoactivation of the 3,4-pyrone ring of the psoralen moiety of the psoralen-oligonuσleotide monoadduct, and its subsequent addition to a thymine on the targeted DNA to which the oligonuoleotide moiety of the monoadduσt is hybridized, provides a diadduσt σrosslink thereby inhibiting the replication and expression of the genetic information in the targeted gene. There are perhaps 1,000 diseases and disorders of the skin. The skin is the body's largest organ, amounting to 15 percent of the total body weight. Within each centimeter, there are about 100 sweat glands, four meters of nerves and more than 3,000 nerve cells responsive to touσh, temperature, pressure and pain. It is also a vital part of the body's immune system; the highest σoncentration of lymphocytes involved in the body's defense meσhanism is loσated in the skin. Further, epidermal cells are known to produce signifiσant amounts of interleukin-1, interleukin-3, thymopoietin, interferon, granulocyte/monocyte colony stimulating factor, lymphocyte function-associated antigens (e.g., LFA-1) and intercellular adhesion molecules (e.g., ICAM-1) . Inhibiting genes from expressing such polypeptide products allows one to effectively treat a variety of serious or troublesome disorders of the immune system. The compositions and methods of the present invention are particularly suitable for treatment of skin disorders by local applications, such as topical application to skin or injection into the tissue to be treated with the photoactivatable therapeutic composition, because of the ease of subjeσting epidermal cells to UVA irradiation. The photoactivatable therapeutic composition permeates the outer layer of the skin. Viable cells in the lower layer of the epidermis absorb the photoactivatable material into the cellular nuclei where the above referred to hybridization and subsequent UVA irradiation takes place. Among the diseases which can be treated by the compositions of this invention are inflammatory diseases (such as atopic dermatis or lupus erythematosus) , diseases of keratinization (such as ichthyosis or psoriasis) , viral diseases (such as warts and herpes simplex) , and neoplastic diseases (suσh as melanoma and cutaneous T cell lymphoma) . In addition, the photoactivatable oligonucleotide compositions and methods of the present invention can be effective in the selective inhibition of not only endogenous genes, but also exogenous genes, such as those derived from viral genomes present in skin cells or other targeted cells which are capable of being UVA irradiated. The onoadducted oligonucleotides described herein may be formulated in suitable phar aceutiσal vehiσles for topiσal or intralesional administration for treatment of skin disorders, such.as psoriasis. The instant compositions can be applied topically to or injected into the treatment site, e.g., subcutaneously by injection. When used for topical applications, the adduct is usually formulated with a pharmaceutically acceptable carrier. Carrier materials are well known in the pharmaσeutiσal formulation art and include those materials referred to as diluents or vehicles. The carrier may include inorganic or organic materials and should have sufficient viscosity to allow spreading of the composition and provide good adherence to the tissue to which it is topiσally applied. Examples of such carriers include, without limitation, polyols such as glyσerol, propylene glycol, polyethylene glycol, suitable mixtures thereof, vegetable oils, and other materials well known to those skilled in this art. The • viscosity of the formulation can be adjusted by methods well known in the art, for example, by the use of a higher moleσular weight polyethylene glyσols. In addition to the adduσt and σarrier, the formulation may contain pharmacologically-acceptable additives or adjuvants such as antimicrobial agents, e.g., methyl, ethyl, propyl, and butyl esters of para-hydrσxybenzoiσ aσid, as well as σhlorobutanol, phenol, ascorbic acid, etc. The formulation may also contain thickening or -•gelling agents, emulsifiers, wetting agents, coloring agents, buffers, stabilizers and preservatives including antioxidants such as butylhydroxyanisole in accordance with the practice of the art. The formulation may also contain penetration enhancers such as dimethyl sulfoxide, long-chain alσohols such as nonoxynol, long- chain carboxylic acids, propylene glycol, N-(2- hydroxyethyl)pyrrolidone,l-dodecyl-azacycloheptan-2-one, and the like. Depending on the method of application and speσifiσ therapeutic requirements, it may be desirable to use absorption-delaying agents such as aluminum monostearate and gelatin. The composition of the formulation may be adjusted using components well-known in the formulation art to provide a pharmaceutiσal formulation whiσh is a gel, cream, ointment, solid, liquid, semi-solid, etc. The particular physical form of the formulation depends on the desired method of treatment and the patient to be treated. Typical formulations of the pharmaceutical compositions of this invention are set forth as follows: Appliσation Form Formulation Per 100 ms. .Cream Injectable Liquid For administration by injection, the compositions acσording to the invention are formulated as solutions or suspensions having a low enough visσosity to be injeσted. The composition suitable for injectable use must be sterile and fluid to the extent that it allows easy injection. It should also be stable under conditions of manufacture and storage and be preserved against contamination by microorganisms. Preservatives include alcohol, benzoic acid, sorbic acid, and methyl and propyl paraben with and without propylene glycol. Additionally, -the pH of the composition must be within the range which does not result in tissue damage or lead to chemical instability of the adduct, namely, between about 4-7. The concentrations of active ingredients in a- particular formulation required to provide a particular effective dose may be determined by a person skilled in the pharmaceutical formulation art based upon the properties of a carrier and the particular additives introduced into the formulation. Formulations may be prepared that have significantl ' higher concentrations of adduct depending upon the carrier and additives being used. If the carrier substantially retains the adduct or releases it at a slow rate, the concentrations of the adduct in the formulation can be substantially increased and in fact may have to be substantially increased in order to provide an effective treatment. In practice, it is preferred that a formulation contain the lowest concentrations of adduct which effectively treat the condition with the desired number of applications, i.e., a lower effective dose rate can be tolerated if multiple applications are used. This low concentration limit is dependent upon the delivery effectiveness of the carrier vehicle. Preferably, the adduct comprises between about 0.01 and about 10 weight percent of the formulation. A preferred embodiment of the instant invention comprises formulations containing adduct, i.e., oligonucleotide 8MOP monoadduct. This formulation is particularly effective in treating psoriasis. Although the effective concentration of adduct delivered to the treatment site depends, inter alia, upon the carrier and other additives included in the formulation, ordinarily the concentration of adduct in the formulation ranges from about 0.01 to 10 weight percent. These ranges are provided by way of description and not by way of limitation since it is recognized that the concentration may be adjusted over a wide range depending on the carrier material, number of applications used, etc., as described hereinabove. The pH of the formulation is important in assuring stability of the adduct as well as assuring that the formulation is physiologically acceptable to the patient.. The pH of the formulation may be maintained through the use of toxicologiσally aσσeptable buffers. Such buffers are well known in the pharmaceutical formulation art, and include hydrochloric acid buffer, acid phthalate buffer, phosphate buffer and citriσ aσid/sodium σitrate buffer. In topiσal applications the instant compositions are applied to the affected area or afflicted situs for the patient. The term "topical" refers herein to the surface of the epidermal tissue, especially the skin, and surface of psoriatic disease on the skin which have been modified, as well as sites from which plaques have been removed from the skin. In preparing a formulation suitable for topical application, the adduct is normally mixed with a suitable solvent. Examples of solvents which are effective for this purpose include ethanol, acetone, acetic acid, aqueous alkaline solutions, dimethyl sulfoxide, glycerine, glycerol, propylene glycol, nonoxynol, ethyl ether, polyethylene glycol, etc. Application by injection can be used for treatment of psoriasis. In this procedure the instant composition is injected directly into the psoriatically involved skin. The following examples illustrate the principles and practices of the invention and are not intended to limit its scope in any way. All percentages are by weight unless otherwise indicated. Example 1: Preparation of a Photoactivatable Oligonucleotide Containing a 4',5' Monoadduct of 8- Methoxypsoralen. Photoactivatable monoadducts of oligonucleotides containing a 4',5' monoadduct of 8-methoxypsoralen (8- MOP) were prepared, as follows. The sequences GAGTATGAG (complementary to a portion of the "sense" strand of a gene) and its complementary sequence, CATAC, were treated with 8-MOP and UVA light (320-400 nm) at 5°C. 8-MOP at 0.2 mg/ l (0.93 mM) oligomeric double helix consisting of equimolar amounts of the above 9-mer and 5-mer in a buffer (0.01 M Tris, 0.001 M EDTA and 0.5 NaCl, pH 7.4) were irradiated with 400 nm light using a grating monochromator. In this way the predominant photoadduct that was made was the 4',5'-monoadduct of the 9-mer. The 4',5' monoadducted oligonucleotide was separated from other oligonucleotide species denaturing using polyacrylamide gel electrophoresis (20% acrylamide with 8.3 M urea). The gel bands were exσised, soaked in distilled water to elute the oligonucleotide containing the monoadduct and then purified by cartridge chromatography. The purified 4',5'-8-MOP oligonucleotides are used to target 8-MOP to specific cellular DNA sequences. A. Photochemistry: 8-MOP (0.2 mg/ml) and the [ 32 P]- oligonucleotide (0.03 mM) in Tris-EDTA buffer were irradiated with 400 nm light. In initial experiments the photochemical kinetics were determined by assaying the solution at 0, 0.5, 1, 2, and 3 hours in order to determine the optimum time for the production of the 4',5' monoadduct of 8-MOP to oligonucleotide. B. Polyacrylamide Electrophoresis: Aliquots of the 8- MOP-oligonucleotide reaction mixture were mixed with a sucrose-dye mixture and applied to a polyacrylamide gel. The current was applied at 10-15 milliamps (about 1500- 2000 volts) for about 5 hours. During electrophoresis the operative temperature of the gel was about 5°C. C. Purification of 4',5' 8-MOP Oligomer: The [ 32P]- oligonucleotide bands on the polyacrylamide gel were visualized by autoradiography. The autoradiogram was used as a template to excise the oligonucleotide bands from the gel. The excised gel band was soaked in distilled water for 4-8 hours to elute the 8-M0P- monoadducted oligonucleotide. The oligonucleotide solution (up to 10 ml containing 20-40 μg of oligonuσleotide) was then applied to a Nensorb cartridge. After a wash to remove unretained species, the purified 8-MOP-oligonucleotide was eluted with a water:methanol solution (60%) at a flow rate of approximately 1 ml/minute. The 8-MOP-oligonucleotide was then lyophilized and dissolved in a small volume of distilled water and its concentration was determined by UV spectroscopy. By irradiating with shorter wavelength UVA light (320-370 nm) , a solution containing the 8-MOP oligonucleotide in the presence of an oligonucleotide containing the complementary sequence, the ability of the monoadducted oligonucleotide to form crosslinks was verified. The yield of crosslinked oligonuσleotides, which migrate more slowly than the original oligonucleotides was estimated by inspection of the autoradiogra . Example 2: Suppression of A picillin Resistance in E. coli by 8-MOP-Oligonucleotide. Ampicillin-resistant E. coli are rendered sensitive to ampicillin by treating the bacteria with an 8-MOP- oligonucleotide constructed by adducting an antisense oligomer of a portion of the ampicillin (amp) resistance gene with 8-MOP as described above in Example 1. A. Bacteria and Media: E. coli strain XL-1 Blue from Stratagene, transformed with Bluescript plasmid, are resistant to ampicillin and tetracycline. The bacteria are grown in LB medium with tetracycline and with or without ampicillin. B. 8-MOP-Oligonucleotide: The sequence 5'-CTCATACTC-3' occurs near the start of the amp resistance sequence (base numbers 2823-2832) , and only in this site in the entire plasmid. The complementary sequence, 5'- GAGTATGAG-3' , a nine-unit oligomer (or "9-mer"), is combined with 8-MOP and then purified as described above in Example 1. By recognizing its complementary sequence in the E. coli plasmid the 9-mer "positions" (or hybridizes) the 8-MOP monoadduct at a crosslinkable site. Crosslinking at this site by subsequent irradiation with UVA light (full spectrum) inhibits the production of "ampicillinase" and hence 8-MOP-oligomer treated bacteria survive in standard media, but not in media containing ampicillin. -The specifiσity of this effect is demonstrated by showing that tetracycline resistance is not affected by this protocol. The 9-mer complementary to the ampicillin sequence (2823-2832) , modified as described above, is added to bacterial cultures and followed by irradiation with UVA light (1-2 Joules/cm 2) . Controls include untreated bacteria as well as bacteria treated with either UVA alone or the 8-MOP-oligomer alone. C. Protocol: 1. Initial Cultures: 50 ul of stationary phase bacteria containing the plasmid are innoculated into 5 ml cultures of LB media containing ampicillin (25 ug/ml) and 8-MOP-oligomer in the concentration range 0-1000 ng/ml (at a concentration of 0 ng/ l, it is a control) and are grown to stationary phase at 37°C. 2. Evaluation of 8-MOP-Oligomer Efficacy: Aliquots of confluent cultures are added (in groups of ten) to media containing either no antibiotic, ampicillin, tetracycline or ampicillin plus tetracycline. Five of the aliquots are treated with UVA light (irradiance 2.5 milliwatts/cm 2) for up to 15 mi.nutes (1-2 J/cm2) . The other five aliquots in each group are kept in the dark. The cultures are grown with continuous shaking (220 rpm) at 37°C. until the group grown in the absence of any antibiotic is in the stationary phase. Viability is determined by plating the cultures on standard agar plates containing ampicillin and tetracycline. Established colonies are then counted within 7 days, and as soon as 1-2 days later. 3. Determination of Target Specificity: Another aliquot of the initial culture is irradiated as described above. The plasmid DNA is isolated and digested with the restriction enzymes, FnuHl and NlalV, yielding multiple fragments including one approximately 50 base pairs containing the target sequence. The digestion products are denatured and then 32 electrophoresed. [ P]-labeled fragment of the amp gene (containing the target sequence) is used as a probe in a Southern transfer analysis of the electrophoretically isolated DNA. D. Results 1. Cultures treated with the 8-MOP-oligomer and UVA and grown in the presence of ampicillin have fewer colonies than any other group. 2. Probing the filter from the Southern transfer shows that the 50 base pair fragment of the plasmid isolated from the treated bacteria migrates at a different rate in comparison to DNA from untreated bacteria due to the crosslinking of the 8-MOP-oligomer in the former. Example III: Photoinactivation of Keratinocyte Cytokine Gene Expression PAM 212 is a spontaneously transformed murine keratinocyte line derived from the skin of neonatal Balb/c mice. This homogeneous cell line constitutively produces IL-1 alpha and granulocyte macrophage colony stimulating factor " (GM-CSF) . The criteria by which this has been determined were: 1) Northern blot analysis using cDNA for murine macrophage IL-1 alpha and murine T cell GM-CSF; 2) biological activity in vitro assays using HT-2 cell proliferation for GM-CSF and D10.G4.1 cell co-stimulation for IL-1; and 3) characterization of purified, conditioned medium from PAM 212 cultures with antibodies raised to recombinantly-derived murine IL-1 alpha and GM-CSF. PAM 212 cells are grown in Dulbecco's minimal essential medium (DMEM) supplemented with 10% fetal calf serum (FCS) as an adherent onolayer in tissue culture plastic. When the monolayer reaches confluence, cells cease to grow by contact inhibition. Confluent monolayers of PAM 212 cells can remain viable in a static growth phase for up to two months, with twice weekly medium changes. Cytokine production from such cultures remains constitutive. The protocol outlined below is designed to inhibit GM-CSF gene expression by the photoinactivation of the GM-CSF gene using an 8- MOP-modified antisense oligomer. The murine gene for GM-CSF contains the sequence 5'-CCCAGTACTC-3' which includes the major initiation site for GM-CSF in RNA synthesis. The psoralen target site in the complementary oligonucleotide strand is the complementary AT sequence. The control for specificity of this process is IL-1 gene expression in the same system. A. Treatment of Cells: PAM 212 cells are grown in 75 cm 2 culture flasks until confluent cultures are obtained. After one week at confluence with medium changes every third day, the 8-MOP-oligomer (produced according to Example 1) is added to tissue culture media (concentration range: 0-100 ng/ml) . After a 30 minute incubation with the PAM 212 cells., the cultures are treated with UVA light (1-2 J/cm 2) . The medium is decanted and the cultures are washed with three changes of PBS before fresh DMEM with 10% FCS is added again. Controls for the above manipulation include untreated cells, as well as cells treated with either UVA light or the 8-MOP-oligomer alone. B. RNA Isolation: At 1, 2, 4, 8, 12, 16, 24, 36, 48, and 72 hours after the above treatment, the medium is harvested from the cells and frozen in 1 ml aliquots. Cells are collected and total cellular RNA is isolated by the guanidinium isothiocynate method of Chirgwin e al. Either total cellular RNA or poly A-selected RNA (enriched for messenger RNA, mRNA) is electrophoresed on an agarose gel and the gel blotted onto nylon filter membrane (zetabind) . The membrane is hybridized with [ 32 P]-cDNA- for GM-CSF and exposed to film at -70°C. Parallel experiments are run with [ 32P]-cDNA for IL-1 alpha. Densitometry is used to assess quantitative differences in mRNA. C. GM-CSF Activity: Medium is assayed for GM-CSF activity by incubation with HT-2 cells for 48 hours, followed by a 4 hour incubation with [ 3H]-thymidine. Incorporation of thymidine into DNA is measured by scintillation spectro etry. The identity of the HT-2 stimulating factor is confirmed by parallel experiments in which neutralizing antibodies to GM-CSF are added to block its effect on the HT-2 cells. Analysis * of proteins which are reactive with the anti-GM-CSF antibody is accomplished by an ELISA. Finally, freeze- thaw lysates of the cultured cells are tested for GM-CSF biological activity and protein in an identical fashion. Samples being tested for GM-SCF are also be tested for IL-1 using D10.G4.1 cloned T helper cells and concanavalin A. Samples are mixed with D10 cells in the presence of Con A and cultured for 72 hours, again 3 . . followed by a 4 hour pulse with [ H]-thymιdme. Proliferation is measured by scintillation spectrometry. D. Results Successful and specific inhibition of GM-CSF gene expression yields the following results: 1. After 4 hours, GM-CSF mRNA is undetectable or markedly reduced by Northern blot analysis, but IL-1 alpha mRNA levels appear unchanged. Alternatively, a qualitatively (size) different GM-CSF mRNA accumulates as a result of aberrant and non-productive transcription of the altered GM-CSF gene. 2. No HT-2 stimulating activity is present in either conditioned medium or cell lysates of treated PAM 212 cells; this absence persists through the period of study. In contrast, the ability of conditioned medium and cell lysates to augment the proliferation of D10 cells in the presence of Con A is unaffected; that is, IL-1 activity is unaffected. 3. ELISA's reveal no im unoreactive GM-CSF in either conditioned medium or cell lysates of PAM 212 cells; in contrast IL-1 alpha immunoreactivity is unaffected. Alternatively, truncated non-functional GM-CSF peptides are evident in the conditioned medium and cell lysate. Example IV: A Phototherapeutic Cream Composition for the Treatment of Contact Dermatitis. A phototherapeutic cream composition for topical application to treat contact dermatitis in a subject patient comprises a phototherapeutic compound which is a chimeric molecule having a photoactivatable drug moiety and an oligonucleotide moiety, in combination with a pharmaceutical carrier therefor in the ratio of 0.01-10 parts by weight of photoactivatable therapeutic compound to 100 parts by weight of carrier. Preferably, the -carrier should not absorb UVA light. The photoactivatable therapeutic compound is a photoactivatable 4',5'-monoadduct of 8-methoxypsoralen (8-MOP) and an oligonucleotide complementary to a segment of the DNA "sense" or "antisense" strand of the CD1 gene, synthesized and purified as described above in Example 1. The antisense oligonucleotide.with which the 8-MOP has been photoreacted has the sequence 5'- TTCCTATAAGTT-3' . The psoralen in this antisense oligonucleotide is capable of reacting with thymine in the targeted gene sequence when it is exposed to UVA light. The carrier formulation is adapted for application to skin and may facilitate the transportation of the photoactivatable therapeutic compound across the skin- cell membranes. Examples of suitable carrier formulations were described earlier herein. A therapeutically effective amount of the phototherapeutic composition, about 0.5 parts by weight of the monoadduct, preferably in the cream formulation described in the above table, is applied to the skin of a subject patient, and after an effective amount of time, (approximately 30 minutes) , the skin is irradiated with UVA light 1-5 J/cm 2 for 5-30 minutes. The DNA of the CD1 gene is thereby inhibited from functioning and the patient is relieved of the disease, contact dermatitis. Example V: Preparation of Oligonucleotides containing Hybrid Internucleotide Linkages for the anti-sense sequence 5'-GAGTATGAG-3' . Three oligonucleotides containing hybrid internucleotide groups having different methylphosphonate locations were prepared using commercially available reagents in a DNA synthesizer (Applied Biosystems) . These hybrids were then co plexed with a complimentary 5-base oligonucleotide, incubated with 4'aminomethyl-4,5' ,8- trimethylpsoralen (AMT) , a psoralen derivative, and then irradiated with UVA. The oligonucleotides were then purified in accordance with Example I. Table I below sets forth the three hybrid oligonucleotides prepared and the location of their respective methylphosphonate groups. The extent of specific photomodification of each of these hybrid molecules was determined by denaturing polyacrylamide gel electropheresis. The photochemical yield for each of these hybrid antisense oligonucleotides was similar to that observed in an unsubstituted unmodified control oligonucleotide. Table I Hybrid * Location of Methylphosphonate (mp) 9mer (alt-mp) alternating, starting at position 2 9mer (TAT-mp) TAT contained all methylphosphonates, the remainder unmodified 9mer (AG-mp) Each AG pair (both 5' and 3' ends) Example VI: Testing of Hybrid Oligonucleotides With Enzymes of Types Known To Occur in Human Skin. An oligonucleotide (9mer) , an ortho-phosphate (mono¬ adduct) oligonucleotide (9mer-MA) and the three hybrid oligonucleotides prepared in Example V were exposed in appropriately buffered solutions to known epidermal type enzymes: T4 polymerase (T4 Pol) , acid phosphatase (AP) and acid phosphatase/phosphodiesterase (AP/PDE) . The sensitivities of the various oligonucleotides are set forth in Table II below. Oligonucleotide 9mer 9mer (alt- p) 9mer(TAT- p) 9mer(AG-mp) 9mer (MA) - +++ not tested not tested (Scale: ++++ most resistant, 0 no resistance) Example VII: Sensitization of Normally Resistant Bacteria to Ampicillin With reference to Example 2, E. coli containing a plasmid having the ampicillin resistance gene beta lactamase was treated with two concentrations of the monoadducted oligonucleotide (9mer-MA) . The oligomer was introduced into the cells by the standard heat shock method. The cells were then incubated at 37°C ' for 60 minutes to permit annealing of the oligomer (9mer) and 2 then irradiated with UVA (2.3 mW/cm ) for 30 minutes while on ice. Fresh media was added to the cells after UVA treatment and the cells were incubated for an additional hour. Cells (untreated controls and those treated with monoadducted 9mer [9mer-MA]) were plated on agar plates with and without ampicillin. Following an overnight incubation at 37°C, colony counts were performed. The ratio of colonies on plates with ampicillin compared to those without ampicillin were used to calculate the effect of 9mer-MA and UVA on colony growth as a measure of the suppression of ampicillin resistance of the E. coli. Bacteria treated with 56 ng of 9mer-MA showed 29% growth inhibition while those treated with 112 ng showed 42% growth inhibition. Bacteria plated on tetracycline containing plates not containing ampicillin " were not affected by the anti-sense oligonucleotide directed against the beta-lactamase enzyme sequence responsible for ampicillin resistance. Example VIII: SI Nuclease Activity on Plasmid Strain SL-1 Blue Treated with Anti-sense Oligonucleotide. A plasmid was obtained from E. coli (Strain XL—1 Blue) and an antisense oligonucleotide (9mer-MA) was synthesized using known reagents in a DNA synthesizer. The plasmid was denatured using 2 M NaOH-2 mM EDTA and then incubated at 37°C for 60 minutes with monoadducted oligonucleotide. This solution was exposed to UVA 2 (320-400 nm, 2.8 mW/cm ) for 30 minutes. The sample was then split into two fractions; one was denatured a second time with NaOH and EDTA. Each fraction was then incubated with S nuclease (40 units in 33 nM NaOAc, 50 mM NaCl and 0.03 nM ZnSO ) at 37°C for 30 minutes and then immediately applied to a 20% polyacrylamide gel run under denaturing conditions. The presence of a protected region was determined by denaturing polyacrylamide gel electrophoresis which showed a band corresponding to a protected region of double stranded oligonucleotide. This confirmed the existence of a double stranded configuration since the band could not have survived exposure to SI nuclease otherwise. Many obvious variations of the invention disclosed will suggest themselves to those skilled in the art. Nothing in the preceding specification is- ntended, however, to limit the scope of the invention as defined by the following claims.

Claims: What is claimed is: 1. A method of inhibiting the function of targeted DNA in a viable cell comprising: (a) administering to a viable cell containing targeted DNA a therapeutically effective amount of a photoactivatable composition comprising the UVA irradiation product of a compound that has two photoactivatable functional groups, and an oligonucleotide of DNA whose sequence of bases (i) contains at least one TA or AT sequence and (ii) is substantially complementary to a segment of cellular DNA of said targeted DNA in said cell; and (b) irradiating said cell with UVA light. 2. The method of claim 1, wherein the difunctional compound is a psoralen compound. 3. The method of claim 2, wherein the difunctional compound is 8-methoxypsoralen. 4. The method according to claim 1 wherein the targeted DNA is responsible for producing a protein selected from the group consisting of interleukin- 1, interleukin-3, thymopoietin, interferon, granulocyte/ onocyte colony stimulating factor, lymphocyte function-associated antigen and intercellular adhesion molecules. 5. The method according to claim 4 wherein the lymphocyte function-associated antigen is LFA-1 and the intercellular adhesion molecule is ICAM-1. 6. A photoactivatable therapeutic composition for inhibiting the function of targeted DNA in a viable cell comprising the UVA irradiation product of a compound that has two photoactivatable functional ' groups, and an oligonucleotide of DNA whose sequence of bases (a) contains at least one TA or AT sequence and (b) is substantially complementary to a segment of cellular DNA of said targeted DNA in said cell, said UVA irradiation product being capable of reacting with said targeted DNA in said cell under photoactivatable conditions to inhibit functioning of said cell, and a pharmaceutically acceptable carrier for said UVA irradiation product in the ratio of 0.01-20 parts by weight of said product to 100 parts by weight of carrier. 7. The photoactivatable therapeutic composition of claim 4, wherein the difunctional compound is a psoralen compound. 8. The composition according to claim 6 wherein the targeted DNA is responsible for producing a protein selected from the group consisting of interleukin- 1, interleukin-3, thy opoietin, interferon, granulocyte/monocyte colony stimulating factor, lymphocyte function-associated antigens and intercellular adhesion molecules. 9. The method according to claim 8 wherein the lymphocyte function-associated antigen is LFA-1 and the intercellular adhesion molecule is ICAM-l.

Inventors: EDELSON RICHARD L, GASPARRO FRANCIS P, EDELSON, RICHARD, L., GASPARRO, FRANCIS, P.
Applicants: CHEMEX PHARMACEUTICALS INC, CHEMEX PHARMACEUTICALS, INC.
Application year: 1989
Main classification: C12Q1
IPC codes: A61K41, C07H21, C12N15