CELLULOLYTIC, N2-FIXING BACTERIA AND USE THEREFOR

Abstract: Cellulolytic, N2-fixing bacteria have been isolated from terrestrial ecosystems. Many of these bacteria can be taxonomically classified as Bacilli, while others may not be characteristic of any previously defined taxon. These organisms are useful for converting lignocellulosic and other cellulosic materials into foods and fertilizers having increased carbohydrate digestibility and enhanced assimilable nitrogen content.

Description: CELLULOLYTIC, ^-FIXING BACTERIA AND USE THEREFOR Background of the Invention Field of the Invention Cellulose constitutes approximately 40% of the 1.8 x O 12 tons of this planet's annual production of phσtosynthetically-generated material [R. H. Whittater, Coπiπunities and Ecosystems, MacMillan, New York (1970)]. For the most part, cellulose is bound in the form of lignocellulosic biomass, degradation of which is responsible for the vast majority of carbon recycled through the biosphere. Industrial sources of lignoσellulose which feed this recycle stream include forestry byproducts, agricultural crop residues and byproducts, and municipal wastes. It has been observed by Veal et al. [Nature 310: 695-697 (August 23, 1984)] that decomposition of the cellulose and •; hemicellulose is inhibited by a nitrogen limitation, and that this inhibition could be σverccroe by deocπposer organisms which combined both σellulolytic and N 2 -fixing functions. Description of the Prior Art The only single organism kncwn to be reported in the literature possessing the ccπbination of cellulolytic and N 2 -fixing capabilities is a bacterium present in a gland in shipworms. This organism, originally discovered by J. D. Popha and M. R. Dickson [Marine Biol., 19: 338-340 (1973)] was first cultured in pure form by J. B. Waterbury et al. [Science 221: 1401-1403 (September 1983)]. The bacterium isolated by Waterbury et al. is cbligately marine, requiring high concentrations of Na + , Cl~, Mg 2 " , and Ca 2+ for grcwth. Under aerobic conditions it requires a source of σαribined nitrogen, but when grown under microaercphilic conditions, it will fix molecular nitrogen. Veal et al. [Biochem. Soc. Trans. 12: 1142-1144 (1984)] confirm that the shipworm bacterium is the only ncwn organism capable of both cellulolysis and N 2 -fixaticn. Veal et al. further report that the occurrence of these functions in other systems is the result of mixed species. For example. Harper et al [J. Appl. Bacteriol. 57: 131-137 (1984)] have isolated frαn decomposing straw aerobic fungi principally responsible for cellulolysis and anaercbic Clostridia responsible for N 2 -fixaticn. Experiments conducted by Veal et al using Tricfaoderma -.-π. ' aτιπm and Clostridium butyricum verify this association, wherein the aerobe presumably provides respiratory protection to the anaerobe. Several other cellulolytic fungi, including species of Fusarium, Penicillium. and SgrdaEJa, were demonstrated by Harper et al. [Curr. Microbiol.2ά ' 127-131 (1986)] to associate with four different strains of C. butyricum in the same manner as T. harziaπum in the decccposition of wheat straw. These findings support the premise that cα υnities exist in the terrestrial environment for biodegradation of cellulosic material. They also establish that certain of these ccranunities can be cultivated in vitro, suggesting the feasibility of industrial fermentation processes for converting cellulose to more useful, nitrogen-containing end products. Of course, the success of such processes would depend largely on maintaining the appropriate balance between the respective organisms. Therefore, the advantages of discovering a single organism for this purpose would be readily apparent. Summary of the Invention we have now unexpectedly discovered and for the first time isolated frαα a terrestrial environment microorganisms that are both cellulolytic and N 2 -fixing. These organisms are the first noπmarine organisms kncwn to be reported which have the ability to both degrade cellulosic materials and to fix atmospheric nitrogen. This invention therefore finds application in converting cellulosic waste to a product having increased carbohydrate digestibility and enhanced assimilable nitrogen content. Such products would be useful as food or food components for higher organises such as plants, animals, and humans. In accordance with this discovery, it is an object of the invention to provide isolated, free-living cultures of cellulolytic, N 2 -fixing organisms. It is also an object of the invention to utilize the subject organisms for the purpose of rendering crop residues, agricultural byproducts, wood, municipal wastes, and other forms of σellulosiό materials into more useful forms. It is another object of the invention to use microbial fermentation to upgrade the nitrogen content of materials which are conventionally amended with exogenous nitrogen for utilization as feeds and fertilizer. Other objects and advantages of this invention will become readily apparent from the ensuing description. Detailed Description of the Invention In reference to the organisms contemplated for use herein, the terms "noπmarine" and "nonobligate-marine" are intended to distinguish such organisms from their counterparts found in a marine or marine-like environment, and thereby requiring a cultivation medium having a high salt concentration similar to that fcund in seawater. The organisms of this invention are essentially terrestrial in the sense that they are naturally found in land or fresh water ecosystems. Thus the term "terrestrial" can also be applied to these organisms in accordance with the above definition. The term "free^-living" in relation to the subject organisms is intended to denote the property of existing on a cellulosic substrate or suitable cultivation medium independent frαn any other living organism. This term is not, however, intended to preeπpt the imtriaT presence of more than one isolate or strain of organism within the scope of this invention. Similarly, the term "isolate" in both its noun and verb forms, and derivatives thereof, are meant to enccπpass both the isolation of a single strain of σellulolytic, N 2 -fixing organism, as well as a plurality of such strains apart frαn other microbial strains which are not so characterized. "Cellulolytic" is used in its normal sense in reference to the property of degrading cellulose to shorter chain polysaccharides, oligosaccharides, dextrins or sugars. "N 2 -fixing" refers to the property of fixing atmospheric nitrogen; that is, reducing molecular nitrogen (N 2 ) to ammonia, with or without further conversion of the aππcnia to sane inorganic or organic nitrogenous cσπpαund which can be assimilated by a higher life form. The end product of this process is referred to as "fixed nitrogen." The subject organisms are found growing on cellulosic substrates in a great diversity of terrestrial environments. The term "cellulosic" means containing cellulose as an integral cccpcneπt, either in pure form or in conjunction with other materials, such as hemicellulose, xylan, or lignin. The organisms, for example, may be isolated from fallen leaves and trees, acorns, crop residues, plants, seed hulls, grass clippings, soils, insects, fungi, etc. We have found that preferred sources of these bacteria are environmental niches or microeπvircnments wherein decomposition of organic plant matter is occurring in the presence of low levels of fixed nitrogen. Bogs, marshes, acidic soils, leached cellulosic litters, herbivorous insects, and the surfaces of many of the aforementioned plant and crop residues are exairples of such places. The subject microorganisms are readily isolated frαn these materials on a selective nitrogen-deficient medium in which cellulose is the sole carbon source. Ey "nitrogen-deficient," it is meant that assimilable nitrogen is either totally absent or else present in an amount insufficient to sustain growth of nαnnitrogen-fixing organisms. Without desiring to be limited thereto, a suitable medium for this purpose is Medium B described in Table I, below. In that it is not uncαumυn, as previously mentioned, for more than one strain to be found on a given substrate, pure isolates may be obtained by subculturing colonies frαn the selective medium. Strains having the desired combination of cellulolytic and N 2 -fixing characteristics can also be selected by sequential passage on both a nitrogen-deficient medium and a medium wherein the sole carbon source is cellulose. The nitrogen-deficient medium Will of course select for.the N 2 -fixing strains, and the cellulosic medium for the cellulolytic strains. While the sequential order of passaging is not critical, it is preferred to first screen for the N 2 -fixers in order to minimize the possibility that other cellulolytic populations would flourish at their esφense. In fact, we have found that the organisms of the invention grew and cαπpete most favorably against other populations when initially transferred frαn the environment to a nitrogen-deficient growth medium wherein the carbon source is a chemically degraded lignocellulosic material. An example of such a material is the alkaline peroxide-treated (AHP) wheat straw used as the carbon source in Medium A of Table I. This material was prepared by the method of Gould, U.S. Patent No. 4,649,113 (herein incorporated by reference) , as discussed further below. It is therefore preferred to use Medium A as an initial growth medium and Medium B as the selection medium. ignocellulosic substrates such as the AHP wheat straw of Medium A would theoretically not permit selection amongst organisms which are strictly ligninolytic or which are capable of degrading sane of the otherminor cocponeπts of lignocellulosic materials. Hcwever, we have observed that Medium A, and certain media containing raw lignocellulosicma erials as the sole carbon source, are nearly as effective as purified cellulose in selecting for cellulolytic organisms. The practice of repeated serial transferring of the culture on initial growth and/or selection media reduces the possibility of contamination in the final culture by any population which is not both cellulolytic and N 2 -fixing. A final check against such contaminants may be conducted by plating out the culture and passaging candidate colonies through the selective media. This - plating is also useful for producing isolates where multiple strains of the subject bacteria are present in the selected culture. Using the cαπbinatiαn ofMediumA and Medium B, described in Table I, and following the protocol set forth in Exanple 1, more than 180 bacterial strains within the scope of the invention have thus far been isolated. Thus, it has become quite evident that,the person in the art applying the disclosed selection technique and media to a cellulosic substrate as defined above could readily isolate therefran a bacterium having the cellulolytic, N 2 -fixing properties necessary for carrying out the conversion process described below. Notwithstanding the apparent ubiquity of these bacteria in environments comprising decaying cellulosic materials, their heretofore obscurity is believed to be the result of their usual meyis-pnop with a relatively large πuπfoer of other organisms which have a role in the decαtpositicn process. It is envisioned that other media similar to Medium A and Medium B in Table I could be applied in isolating organisms within the scope of the invention. Based upon characterizations cαtpleted at the time of filing this application, the strains isolated by this inventive process have been categorized into three groups: Group I constituting approximately 144 isolates emprises organisms generally similar to each other but which are not appropriately classified in any of the known taxoncnic genera; Group II constituting approximately 30 isolates cαiprises new strains or even new species of the genus Bacillus: and Group III constituting approximately 12 isolates which have not been sufficiently characterized to be taxonαnically classified. The taxσnαnic characteristics of Groups I and II are as follows: Group I gram (-) elliptiςal rods plecmorphic motile by polar flagella facultative anaerobes no resting stages grow in nitrogen-deficient media utilize cellulose as a sole carbon source Group II gram (+) long, slender rods spore— ormers motile by peritrichcus flagella facultative anaerobes grow in nitrogen-deficient media utilize cellulose as sole carbon source By cultivating isolates obtained from the selective media under a variety of conditions and on a variety of transfer media, vigorous, nαnfastidiσus strains can be isolated. Organisms isolated in accordance with the aforementioned process are useful in the conversion of cellulosic materials to more useable forms. Exanples of such materials can be categorized as follows: Category I. leaves and stalks of noπwoody plants, particularly monocotyledencus plants, and especially grassy species belonging to the family Gramineae. Of primary interest in this category are gramineous agricultural (crop) residues; that is, the portions of grain-bearing grassy plants which remain after harvesting the seed. Illustrative of such residues without limitation thereto are wheat straw, oat straw, rice straw, barley straw, rye straw, buckwheat straw, corn stalks, and the like. Also included within this category are certain grasses not conventionally cultivated for agricultural purposes, such as prairie grasses, gamagrass, and foxtail. The term ■• woody" is used herein in the botanical sense to mean "comprising wood," that is, α,ιιnιnκpfl. of extensive xyle tissue as found in trees and shrubs, and also in the sense of being woodlike. Accordingly, "ncπwασdv" refers to materials lacking these characteristics. Category II. Agricultural byproducts including fruits, roots, tubers and components thereof. The terms "fruits," "roots," and "tubers" are used herein in the botanical sense. The lignocellulosic substrates of principal interest in this category are waste stream components frαn commercial processing of crop materials such as sugar beet pulp, citrus fruit pulp, ncπwooόy good hulls, corn cobs, corn husks, and cereal bran. The term "citrus fruit pulp" defines the waste product of the citrus juice industry. This product typically includes both the rind of the fruit and also the fleshy juice sacs. The fleshy material is oftentimes also referred to as "pulp," and it alone is a suitable substrate within the ambit of the invention. Category III. Forestry products and byproducts frαn deciduous and coniferous trees including bark, twigs, leaves, woodchips, sawdust, wood pulp, processed cellulose such as newsprint, etc. Category IV. Miscellaneous, to include municipal waste and other sources of cellulose not within the scope of Categories I to III, above. In preparation for microbial treatment in accordance with the method of the invention, the material may optionally be subjected to one or more preparatory steps such as chopping or grinding to facilitate handling or to enhance the surface-to-volume ratio. In sane rases, it may be necessary to clean the substrate by screening, washing, or the like in order to remove dirt, debris, and other ' undesirable matter. In addition, it may be desirable to pretreat the material by the AHP treatment described by Gould, supra. Despite the fact that Gould is limited to the treatment of noπwoody leaves and stalks as within Category I, above, for purposes of this invention materials within all of Categories I to IV could be advantageously treated, but especially those materials within Categories I and II. Briefly, the Gould reaction is conducted in an aqueous medium in sufficient quantity to effect uniform wetting of the substrate with a peroxide to substrate ratio of at least about 0.01 (ww) . For optimum yield of available carbohydrate, the pH of the resultant slurry is controlled within the range of about 11.2 to about 11.8, and preferably as close to 11.5 as possible. Initial adjustment of the slurry pH to within the aforementioned range is readily accomplished by addition of sodium hydroxide or other strong alkali. The reaction of the alkaline peroxide with the lignocellulosic substrate proceeds at a relatively rapid rate at room temperature (25° C) . The mechanism of N 2 -fixation by the organisms of this invention is presumed to be akin to that of most other kncwn N 2 ~fixers. Molecular nitrogen frαn the atmosphere is first reduced intracellularly in the nitrogenase system to asmonia. The amnonia is thereafter available to the organism for conversion into amino acids with subsequent assimilation into microbial protein. Alternatively, amnonia released frαn the cell may be converted by nitrification to nitrites and then to nitrates, and thereby become available for assimilation by plants. Other microorganisms introduced or naturally associated with the cellulose may also be instrumental in converting the fixed nitrogen to a product having nutritive value to higher organisms. The substrate to be treated may be inoculated in situ as in the case of field crop residues. The fixed nitrogen thereby bεcαnes available in the soil through the above-described process for utilization by a subsequent crop. In another embodiment, the material may be treated in a processing facility, wherein the nitrogen-enriched product would be recovered by appropriate means and then transported to its end use site. The products of the invention are useful as fertilizer, feed for nαnruminant animals such as fish, shellfish, or other aquatic organisms, ruminant animals such as cattle or sheep, and as a valuer-added dietary fiber for humans. When used as a feed component for livestock or aquatic animals, the inoculated cellulose substrate may be fermented in the holding pens, and thereby be directly available to the animal on an ad libitum basis. The following exaπples are intended only to further illustrate the invention and are not intended to limit the scope of the invention, which is defined by the claims. Exaπple 1 General Isolation Methodology for Cellulolytic. No-Fixing Bacteria. A small saπple (approximately 0.5 g) of material collected frαn a microenvironmeπt judged likely to contain N -fixing, cellulolytic bacteria was placed in a sterile 250-ml Erleπmeyer flask containing 100 ml of Medium A (Table I). Sane environmental saπples (e.g., insects) were first homogenized in a small amount of sterile Medium A in a Waring blender, and about 2 ml of the hαnogenate was used as the inoculum. For each environmental saπple, three flasks were inoculated. Two were incubated without shaking (one at 28° C, one at 37° C) , and the third was incubated at 25° C on a gyrorotary shaker operating at 100 rp . Transfers were made into fresh Medium A (1 ml inocula into 100 ml medium) every 2 to 5 days (depending pon observed rate of growth) until five to seven transfers had occurred. ' At this point, sterile Erleπmeyer flasks containing 100 ml of Medium B were inoculated with 1 ml of the final Medium A culture exhibiting the best growth, and incubated under the same conditions. Transfers were made into fresh Medium B (1 ml inocula into 100 ml medium) every 2-5 days until five to seven transfers had been made. Isolation streak plates were then made frαn the final Medium B culture onto four different solid media: Table I Amount (g/1 tap water) Nutrient 3 Medium A b Medium tf> AHP-treated wheat straw 0 20 purified alpha-oellulosβ d KH 2 P0 4 Mgso 4 .7H 2 o NaCl CaCl 2 PeCl 3 NaMo0 4 .2H 2 0 ' ■ Difoo" yeast extract d "Sigmaoell" or "Solka-Floc SW-40." πutrieπt agar, brain heart infusion agar, mineral glucose agar, and no-nitrogen calcium chloride agar (Media C-F, respectively, Table H) . Individual colonies growing on brain heart infusion agar, mineral glucose agar, and no-nitrogen calcium chloride agar were then replated onto nutrient agar. Based upon colony characteristics determined frαn comparison of individual colonies growing en all four types of solid media, the number of different organisms in the final Medium B liquid culture was determined, and each organism was assigned a unique number. Each individual organism was inoculated from nutieπt agar plates into separate 250-ml Erleπmeyer flasks containing 100 ml of Medium A or 100 ml of Medium B, respectively. Transfers were made into fresh media (1 ml inocula into 100 ml medium) every 2-5 days until five to seven transfers had been made. Nutrient agar slants of isolates exhibiting good growth through these transfers on both Medium A and Medium B were established using the final Medium A liquid culture as the inoculum. A number of the cellulolytic, N 2 -fixing bacteria isolated by this procedure were subsequently characterized by standard methodologies. A summary of these bacteria and their taxαnαnic characterizations are reported below in Tables HIA-IIIC. The collection sites of these and other cellulolytic, N 2 -fixing organisms isolated by the procedure of Exaπple l are summarized in Table IV. The isolates constituting mixed cultures ID5 (ID5A-ID5C) and LD7 (ID7A-UJ7L) were deposited under the Budapest Treaty with the Agricultural Research Service in Peoria, IL. The NRRL Accession Numbers assigned to these isolates are summarized in Table V. For purposes of illustration a more detailed description of the isolation and characterization of isolates ID5A-ID5C is given in Exaπple 2 and accompanying Table VI, below. Table H Media Formilations: Nu en A a Medium C Table II (Continued) ar Mediu Table IIIA Group I Organisms (Nσncharacteristic of Known Taxonαmic Groups) These organisms have the following characteristics in ocmnon: gram negative, elliptical rods (often plecmorphic); motile, at least in early growth stages; those organisms examined exhibit one or two polar flagella; facultatively anaerobic; sustained growth through multiple transfers on each of the following media: Media A and B (modified ATOC Spirillum nitrogen-fixing medium No. 838), Medium F (mineral glucose agar) , and Medium G (Becking medium); form gas frαn glucose; do not make H 2 S en triple-sugar iron agar 3 ; no resting stages observed. GtC (for those isolates tested) = 60-73%. Additional characteristics for isolates used in Examples 2-19 are given below. Isolate Catalase c Nitrate* y β LD5B + ID5C -t* LD7A + I07B + + ID7C - U7D + I07E + I07F + LD7G + I07H + 1D7I I07J I07K + LD10D + LD10E + D10F + + ID10G + ID10H + I 10I + (continued) Table IIIA (Continued) Isolate Qxidaser Catalase Nitrate* vp β a Difco Manual. 10th EditicHi, Difco laboratories, Inc., Detroit, MI, pp. 1019-1020 (1984). b Bailey and Soott *f s Diagnostic Microbiology. 7th Edition (S. M. Finegold and E. J. Baron, ed.), C. V. Mosby Co., St. Iouis, MQ, p. 113 (1986). c Manual of Clinical Microbiology. 4th Edition (E. H. Lennette, A. Balσws, W. J. Hauser, Jr., and H. J. Shadαπy, eds.), American Society for Microbiology, Washington, D.C. , p. 1093 (1985) . d R. E. Gordon, W. C. Haynes, C. H.-N. Pang, The Genus Bacillus. Agricultural Handbook No. 427, USCA, p. 12 (1973). e Voges-Proskauer test, Difco Manual, supra, pp. 543-545. Table IIIB Group II Organisms (Characteristic of the Genus Bacillus) These organisms have the following characteristics in ocmnon: gran positive, long, slender rods; motile, at least in early growth stages; those organisms examined exhibit peritrichαus flagella; facultatively anaerobic; sustained growth through multiple transfers on each of the following madia: Media A and B (modified ATOC Spirillum nitrogen-ixing median No.838), Medium F (mineral glucose agar), and Medium G (Becking medium); do not make H j S en triple-sugar iron agar*; form endoβpσreβ in late growth stages. Additional characteristics for isolates used in Examples 2-19 are given below. Isolate SddaesP c jalaas c Mttaafcs 0 HP + + + - - - + - - + + - + + + a Pifoo Manual.10th Edition, Difoo laboratories, Inc., Detroit, MI, pp. 1019-1020 (1984). b Bailey arri Swtt'ff PlffTOgtlc MJcrgfeialgK, 7th Edition (S. M. Finegold and E. J. Baron, ed.), C. V. Moβby CO., St. Louis, MO, p.113 (1986). c Manual of Clinical Microbiology.4th Edition (E. H. Lunette, A. Balows, W. J. Hauser, Jr., and H. J. Shadomy, edβ.), American Society for Microbiology, Washington, D.C., p.1093 (1985). d Ro E. Gordon, W. C. Haynes, C. H.-N. Pang, The Genus Bacillus. Agricultural Handbook No. 427, USDA, p. 12 (1973). * e Voges-Prosauer test, Pifoo Manual, supra, pp.543-545. Table IIIC Group III Isolates (Not Taxσnαnically Characterized) The taxonomic characberization of the organisms listed below is inccnplete at this time. All organisms exhibit sustained growth through multiple transfers on each of the following media: Media A and B (modified ATOC Spirillum nitrogen-fixing medium No.838), Medium F (mineral glucose agar), and Medium G (Becking medium). Isolae • ID10A ID10N ID10Q ID10X ID27A ID27B ID27C ID27D ID27E ID27F LD27G LD27H Table IV Sources of Cellulolytic, N 2 -Fixing Bacteria Isolate No. Collection site LD1A - ID1H Potato peel collected from pile of waste potatoes riisrpirdFd onto a field in northern Peorla County, IL ID2A - ID2I Acorns collected fom ground under a white oak tree (Ouercus alba) in central Peorla County, IL ID3A - ID3K Unprocessed, whole grain rice organically grown in Louisiana LD4A Found growing in laboratory glassware containing distilled water and AHP-treated wheat straw, eastern Peorla County, IL ID5A - ID5C Cattail shoot collected from a glacial moraine, central Peoria County, IL ID6A - ID6D Oorn stover collected from an agricultural field in central Peoria County, IL ID7A - ID7L Marsh soil at the base of a small glacial moraine, central Peoria County, XL LD8A - LD6L Bog soil, central Peoria County, IL ID9A - ID9J Bog sou, Kettle Moraine State Forest, Fondulac Cou ty, W ID1QA - IDIODD Oak root saprophyte (Conαpholis americana) collected in Kettle Moraine State Forest, Sheboygan County, WI ID11A - ID1IE Litter beneath a cedar tree fJunioerus ashei), central Travis County, X. ID12A - ID12W Cannon field grasshopper collected in central Peoria County, IL LD14A - ID14Q Ants (Atta texana) collected in western Bastrcp County, TX ID17A - ID17K Discarded AHP-treated sugar cane bagasse, eastern Peoria County, IL ID18A - ID18Q atti g wheat grain collected frent inside wooden storage bin, central Peoria County, IL ID27A - ID27I Cypress swamp water, Cameron County, IA ID77A - ID77F Potting wheat grain collected frαn inside wooden storage bin, central Peoria County, IL General characteristics: gram stain morphology motile flagella 0 2 requirement resting stage guanine + cytosine (mole percent) I + + I + + + + + +++++++ -**•• + + + + + + + + + 3 « 3. I ++ I I I Q 0 T 33 • I l + l + l + l I + + + + I α α ■* *_- ft -εε- Table VI (continued) Fermentative growth: glucose + + + starch + + + lactose weak + + maltose weak + + sucrose + + + arabinose + + fructose + + + xylose + + + mannitol + + Exanple 2 Isolation of Cellulolytic. ^-Fixing Bacteria. Approximately 0.5 g of cattail shoot was placed in each of three sterile 250-ml Erleπmeyer flasks containing 100 ml of sterile Medium A. The cattail shoot saπple was collected on September 1, 1985, frαn the center stalk of an immature catt il plant (Typha latifolia) growing on a glacial moraine in central Peoria County, IL. Two of the flasks were incubated without shaking (one at 28° C, one at 37° C) , and the third was incubated at 25° C on a gyrorσtary shaker operating at 100 rpm. Transfers were made into fresh Medium A (1 ml inocula into 100 ml medium) every 2 or 3 days until a total of five transfers had been made. At this point, sterile Erleπmeyer flasks containing 100 ml of Medium B were inoculated with 1 ml of the final Medium A culture grown at 28° C without shaking, and incubated under the same conditions. Transfers were made into fresh Medium B (1 ml inocula into 100 ml medium) every 2 or 3 days until five transfers had been made. Isolation streak plates were then made from the final Medium B culture onto four different solid media: nutrient agar, brain heart infusion agar, mineral glucose agar, and no-nitrogen calcium chloride agar (Media C-F, respectively. Table II). Individual colonies grcwing on brain heart infusion agar, mineral glucose agar, and no-nitrogen calcium chloride agar were then replated onto nutrient agar. Based upon colony characteristics determined frαn ccπparison of individual colonies growing on all four types of solid media, it was determined that three different organisms were contained in the final Medium B liquid culture. These were designated as isolates ID5A, LD5B, and ID5C, respectively. Each of the isolates was inoculated frαn nutrient agar plates into separate 250-ml Erleπmeyer flasks containing 100 ml of Medium A or 100 ml of Medium B, respectively. Transfers were made into fresh (l ml inocula into 100 ml medium) every 2 or 3 days until five transfers had been made. Since all three isolates grew well in both Medium A and Medium B through the five transfers, pure cultures of each isolate were established and maintained on nutrient agar slants inoculated frαn the final Medium A liquid culture. Detailed taxcn nic characterizations of isolates ID5A-C are given in Table VI. Exaπple 3 Protein Production bv Organism Tjy Gtxwinσ in a Nitrooen-Deficieπt Medium with Cellulose as Sole Carbon Source. Liquid cultures of oganic XD5B were grown in sterile 250-ml Erleπmeyer flasks containing 100 ml of Medium A or Medium B. The cultures were inoculated on day 0 with 1.0 ml of a 48-hr-old liquid culture of LD5B grown on Medium A, and incubated at 28° C on a ' gyrorotary shaker operated at 90 rpm. After the indicated number of days, a 2.0-snl aliquot of the culture medium was removed and centrifuged at 12,500 x g for 15 min to sediment cellulose particles and microbial cells. The protein content of the cell-free supernatant, determined by the method of ∑cwry [O. H. Icwry et al., J. Biol. Chem. 193; 265 (1951)], was <0.04 mg ml. The pellet was resuspended in approximately 4.5 ml of deicnized, distilled H 2 0, centrifuged at 12,500 x g for 15 min, and the resulting pellet resuspended in 1.0 ml of distilled, deicnized H j O. Duplicate 0.5-ml aliquots of the sample were added to 0.5 ml of 1 N NaOH and incubated at 100° C for 10 min to lyse the cells. After cooling, the protein ccπteπt of the suspension was determined by the method of lowry [supra], using bovine serum albumin as the standard. The results are reported in Table VH, below. Table VII Protein Production by Organism ID5B in Nitrogen-Deficient Media with Cellulose as Sole Carbon Source Carbon source AHP-treated wheat straw Wood pulp (Medium A) * cellulose 3 (Medium B) ■Dy (ro*? proteiiVml) ( g prσteiη/ml) <0.002 0.013 n.d. π 0.007 n.d. b 0.016 a "Solka-Floc SW-40." b n.d. = not determined. Exaπple 4 ' Nitrogen-Deficient Mpdia Ocntainirp AHP-Treated Wheat Straw as Sole Carbon Source. Mixed cultures ID7 (12 isolates, LD7A-ID7L) and LD10 (30 isolates, ID1QA-ID10DD) were grown in sterile 250-ml Erleπαeyer flasks containing 100 ml of the Medium A. These flasks had been inoculated en day 0 with 1.0 ml of a 48-hr-old liquid culture grown en the same medium, and incubated at 28° C without shaking. On the indicated day, the insoluble fraction of each culture was collected by centrifugation at 15,300 x g for 20 min. The resulting pellet was resuspended in apprco mately 20 ml of distilled water and again centrifuged at 15,300 x g for 20 min. The final pellet was dried at 50° C for 24 hr, ground with a mortar and pestle, and the nitrogen content (in grams N per 100 g dry solids) determined with a "Leco" cartocn-Ilydrogen→Titrogen Analyzer. Protein content was taken as 6.25 x N.[D. Herbert et al. , Methods in Microbiology. Academic Press, Vol. 5B, pp. 243-244 (1971) ] . The results axe lw- orted in Table VIII, below. Table VIII Protein Production by Mixed Cultures ID7 and ID10 in Nitrogen-Deficient Media Ocntaining AHP-Treated Wheat Straw as Sole Carbon Source Protein in Insoluble Fraction 9 a Grams protein per 100 g dry solids. b Contained isolates ID7A-ID7L. c Contained isolates ID10A-LD10DD. Exaπples 5-8 Ef ect of AHP Treatment of Wheat Straw on Protein Production by ' Mixed Cultures IP7 and ID27 Growing in Nitrogen-Deficient Madium. Flasks were inoculated with mixed cultures LD7 (12 isolates, ID7A-ID7L) and ID27 (9 isolates, ID27A-ID27I), and the cultures were grown as described in Exaπple 4, except that for Exanples 5 and 7 AHP-treated wheat straw was replaced with untreated wheat straw that had been ground in a Wiley mill to pass a 2-mn screen. The insoluble portion of each culture was collected, washed, and its protein content determined as described in Example 4. The results are reported in Table IX, belcw. Table IX Effect of AHP Treatment of Wheat Straw on Protein Production by Mixed Cultures ID7 and ID27 Growing in Nitrogen-Deficient Media a Grams protein per 100 g dry solids. b Contained organisms ID7A-ID7L. c WS = wheat straw. d AHP-WS = alkaline hydrogen peroxide treated wheat straw. e Contained organisms ID27A-ID27I. Examples 9-16 Protein Production bv Mixed Culture LD27 Growing on Nitrogen-Deficient Medium Using Various Carbon Sources. Flasks were inoculated with mixed culture LD27 (9 isolates, LD27A-LD27I), and the culture was grown as described in Example 4, replacing the AHP-treated wheat straw with various carbon sources (2 g flask) as indicated. AHP treatments of the substrates were carried out as described by Gould [U.S. Patent 4,694,113]. All substrates were ground in a Wiley mill to pass a 2-mm screen. Protein content (grams/100 g dry solids) of the insoluble fraction in each culture was determined as described in Example 4. The results are reported in Table X, below. Table X Protein Production by Mixed culture LD27 a Growing on Nitrogen-Deficient Media Using Various Carbon Sources Protein in insoluble factiorr a Contained organisms ID27A-ID27I. b Grams protein per 100 g dry solids. Example 19 AHP-Treated Wheat Straw Preincubated with Mixed Culture LD7. The feed value of AHP-treated wheat straw preincubated with mixed culture LD7 (12 isolates, LD7A-LD7L) was evaluated using juvenile white river crayfish fPrrx -mfcarus acutus). Sterile 20-1 carboys containing 101 of the liquid growth.Medium A amended with 1.5 g/1 NH 4 & were inoculated with 10 ml of a 48-hr-old liquid culture grown on the - ~~ *~~^ medium. The carboys were incubated at 25° C without shaking, but sterile air was bubbled through the medium to ensure adequate aeration and mixing of contents. Beginning after 2 to 3 days incubation, a portion of the solids was collected daily by filtration on a fine wire mesh screen, and was fed to crayfish as described below. Crayfish having an initial weight of 1.5-4 gyanimal were maintained in 5-gal glass aquaria with four animals per aquarium. Each aq arium contained continuously aerated tap water to a depth of about 6 cm and a small plastic shelter. Crayfish in one aquarium were fed wet microbially a pndd AHP-treated wheat straw equal to approximately 1% of their body weight at 0800 and 1600 hr daily. Crayfish in a separate aquarium were fed a similar level of a balanced, hiα^i-protein crayfish feed (Table XI) instead of the AHP-treated wheat straw. Crayfish from both aquaria were weighed periodically, and the average weight gain per animal calculated. The results are reported in Table XU, below. Table XI Table XII Live Weight Gain for Crayfish Fed a Balanced Crayfish Diet or AHP Ereated Wheat Straw Preincubated with Mixed Culture ID7 mulative live weight gaiή/animal (g) a Contained organisms ID7A-ID7L. b See Table XI. It is understood that the foregoing detailed description is given merely by way of illustration and that modification and variations may be made therein without departing frαn the spirit and scope of the invention.

Claims: We Claim; 1. A method of isolating terrestrial, cellulolytic, N 2 -fixing organisms from the environment comprising the following steps: a. providing a substrate hosting; one or mere of said organisms; b. inoculating with said one or more organisms a nitrogen-deficient medium comprising cellulose as the sole carbon source; and c. cultivating said one or more organisms on said medium under conditions suitable for their growth. 2. Amethod as described in Claim 1 and further comprising: d. obtaining a colony of said organisms from step (c); e. incculating from said colony a nitiuyett-defiάieπt medium comprising cellulose as the sole carbon source; and f. cultivating said colony on said medium under - conditions suitable for its growth. 3. A method as described in Claim 1 and further comprising: d. obtaining a colony of said organisms from step (c); e. sequentially incculating with organisms defined by said colony, in either order, a nitrogen-deficient medium and a medium (»ιi|'rising cellulose as the sole carbon source; and f. cultivating said organisms in step (e) on said ive media. 4. A method of isolating terrestrial, cellulolytic, N 2 -fixing organisms frαn the environment -comprising the following steps: a. providing a substrate hosting one or more of said organisms; b. seqentially inoculating with said organisms, in either order, a nitrogen-deficient medium and a medium comprising cellulose as the sole fwini source; and c. cultivating said organisms in step (b) on said .ive media. 5. A method as described in Claim 4 and further comprising: d. obtaining a colony of said organisms cultivated on both of said r trogen-deficient • medium and said medium comprising cellulose as the sole carbon source; e. inoculating with said colony a nitrogen-deficient mediim) comprising cellulose as the sole carbon source; and f. cultivating said colony en said medium under conditions suitable for its growth. 6. A method as described in Claim 4 and further comprising: d. obtaining a colony of said organisms cultivated on both of said nitrogen-deficieπt medium and said medium comprising cellulose as the sole carbon source; e. sequentially inoculating with organisms defined by said colony, in either order, a nitrogen-deficient medium and a medium comprising cellulose as the sole carbon source; and f. cultivating said organisms in step (e) on said respective media. 7. A method of isolating nαrcbligately-marine, cellulolytic, N 2 -fixing organisms from a cellulosic or lignocellulosic substrate in the environment comprising selecting for said organisms on a nitrogen-deficient medium comprising cellulose as the sole carbon source. 8. A free-living biologically pure culture of a terrestrial, cellulolytic, N 2 -fixing microorganism. 9. The culture of Claim 8 wherein said microorganism is a bacterium. 10. A mixed culture consisting essentially of free-living terrestrial, cellulolytic, N 2 -fixing isolates. 11. A method of treating cellulosic material comprising the steps of: a. inoculating the material with one or more terrestrial, cellulolytic, N 2 -fixing isolates; and b. fermenting said material in the presence of the isolates under conditions sufficient for degradation of the cellulosic material and production of fixed nitrogen. 12. The method of Claim 11 wherein said cellulosic material has been pretreated with alkaline hydrogen peroxide. 13. The method of Claim 11 and further cαiprising the step of feeding the fermented product to a human or an animal. 14. The method of Claim 12 and further comprising the step of feeding the fermented product to a human or an animal. 15. The product produced by the method of Claim 11. 16. The product produced by the method of Claim 12. 17. A food composition comprising as a cccponent the product of Claim 15. 18. A food composition comprising as a component the product of Claim 16. 19. A fermentation broth comprising a cellulosic substrate and an inoculum consisting of one or more isolates of terrestrial, cellulolytic, N 2 -fixing microorganisms. 20. A fermentation product comprising cellulolytic and N 2 -fixing enzymes.

Inventors: DEXTER LEE B, GOULD JOHN M, DEXTER, LEE, B., GOULD, JOHN, M.
Applicants: DEXTER LEE B, GOULD JOHN M, DEXTER, LEE, B., GOULD, JOHN, M.
Application year: 1988
Main classification: C12N1
IPC codes: A23K1, A23L1, C12N1, C12P21, C12R1