DNA ENCODING [Asp<113>] AND [Lys<46>, Asp<113>] THAUMATIN I

Abstract: Genes which are capable of directing the synthesis in a selected host microorganism of two thaumatin I analogues both of which have the amino acid sequence of natural thaumatin I including an aspartate amino acid residue in the 113th position from the amino terminal end of the polypeptide and one of which additionally has a lysine amino acid residue substituted for asparagine in the 46th position from the amino terminal end.

Description: DNA ENCODING [Asp 113 ] and [Lys 46 , Asp 113 ] THAUMATIN I BACKGROUND The present invention relates generally to the manipulation of genetic materials and more particularly to the manufacture of specific DNA sequences useful in recombinant procedures to secure the production of analogs of a polypeptide identified as natural thaumatin I which include an aspartic acid residue in the 113th position from the amino terminal end of the polypeptide and may further include a lysine residue at the 46th position. Thaumatin is an extremely sweet-tasting protein produced in the arils of the fruit of the African shrub Thaumatococcus daniellii Benth. The fruit traditionally has been used in West Africa as a sweetener of palm wine, corn, bread, and sour fruit. Thaumatin, which is about 5,000 times sweeter than sucrose on a weight basis, is produced in at least five forms: thaumatins I, II, a, b and c. These proteins, named in the order of elution from an ion exchange column [Higgenbotham, et al. , in Sensory Properties of Foods (Birch, et al. , eds.), London: Applied Sciences, pp. 129-149 (1977)], have molecular weights of ' approximately 22 kilodaltons. Thaumatins I and II are nearly identical proteins, each consisting of a single unmodified polypeptide chain, 207 amino acid residues in length. Thaumatins I and II are non-toxic proteins, are low-calorie and non-cariogenic, and elicit profound sweet taste responses suggesting a stable interaction between these proteins and human taste receptors. Therefore, thaumatin has potential for use as a sugar substitute, food additive, a sweetness receptor probe and a tool for further elucidation of the taste response. A plentiful supply of pure thaumatin is required to utilize the protein as a possible food additive and research tool. Because the thaumatin plant requires a tropical climate and insect pollination for successful fruit propagation, there are considerable difficulties involved in greenhouse cultivation of the fruit. lyengar disclosed an amino acid sequence for thaumatin I which is shown in Table I below [lyengar, et al. , Eur. J. Biochem., 96, 193-204 (1979)]. Table 1 1 10 NH 2 -Ala-Thr-Phe-Glu-Ile-Val-Asn-Arg-Cys-Ser-Tyr-Thr-Val- 20 Trp-Ala-Ala-Ala-Ser-Lys-Gly-Asp-Ala-Ala-Leu-Asp-Ala-Gly- 30 40 Gly-Arg-Gln-Leu-Asn-Ser-Gly-Glu-Ser-Trp-Thr-Ile-Asn-Val- 50 Glu-Pro-Gly-Thr-Asn-Gly-Gly-Lys-Ile-Trp-Ala-Arg-Thr-Asp- 60 Cys-Tyr-Phe-Asp-Asp-Ser-Gly-Ser-Gly-Ile-Cys-Lys-Thr-Gly- 70 80 Asp-Cys-Gly-Gly-Leu-Leu-Arg-Cys-Lys-Arg-Phe-Gly-Arg-Pro- 90 Pro-Thr-Thr-Leu-Ala-Glu-Phe-Ser-Leu-Asn-Gln-Tyr-Gly-Lys- 100 110 Asp-Tyr-Ile-Asp-Ile-Ser-Asn-Ile-Lys-Gly-Phe-Asn-Val-Pro- 120 Met-Asn-Phe-Ser-Pro-Thr-Thr-Arg-Gly-Cys-Arg-Gly-Val-Arg- 130 Cys-Ala-Ala-Asp-Ile-Val-Gly-Gln-Cys-Pro-Ala-Lys-Leu-Lys- 140 150 Ala-Pro-Gly-Gly-Gly-Cys-Asn-Asp-Ala-Cys-Thr-Val-Phe-Gln- 160 Thr-Ser-Glu-Tyr-Cys-Cys-Thr-Thr-Gly-Lys-Cys-Gly-Pro-Thr- 170 180 Glu-Tyr-Ser-Arg-Phe-Phe-Lys-Arg-Leu-Cys-Pro-Asp-Ala-Phe- 190 Ser-Tyr-Val-Leu-Asp-Lys-Pro-Thr-Thr-Val-Thr-Cys-Pro-Gly- 200 207 Ser-Ser-Asn-Tyr-Arg-Val-Thr-Phe-Cys-Pro-Thr-Ala-COOH The amino acid sequence for thaumatin II has been deduced from its nucleotide sequence [Edens, et al. , Gene, 18, 1-12 (1982)] and a gene for thaumatin II has been cloned from messenger RNA-derived cDNA. The amino acid sequences of thaumatin I and thaumatin II are very similar and their amino acid sequences differ in only five positions according to the reports of Edens, et al. and lyengar, et al. The five amino acids in the thaumatin II sequence which differ from those reported by lyengar, et al. for the natural thaumatin I sequence are the following: lysine instead of asparagine at residue 46; arginine instead of serine at residue 63; arginine instead of lysine at residue 67; glutamine instead of arginine at residue 76; and aspartic acid instead of asparagine at residue 113. Sequence analysis also indicated that thaumatin II is initially translated as a precursor form, preprothaumatin, with both a 22 residue amino-terminal extension and an acidic, six- amino acid carboxy terminal tail. The amino terminal peptide was postulated as a secretion signal based on its hydrophobic character and a compartmentalization role was hypothesized for the carboxy terminal extension. A great deal of work has been directed toward study of the thaumatin family of polypeptides and much effort has been directed toward the manipulation of genetic materials for the microbial production of thaumatin. The Edens, et al. reference cited above notes that a polypeptide having the native sequence of preprothaumatin II has been microbially produced. More specifically, the reference and European Patent Application Nos. 54,330 and 54,331 disclose cDNA sequences coding for- native mature thaumatin II and preprothaumatin II and also disclose cloning vehicles comprising the DNA sequences for use in transformation in microorganisms. While there exist no reports of the isolation of a gene encoding thaumatin I from natural sources (e.g., by genomic or cDNA cloning) work has also been directed toward microbial synthesis of the thaumatin I polypeptide as identified by lyengar, et al. In co- owned, pending U.S. Patent Application Serial No. 540,634 filed October 11, 1983, the disclosure of which is herein incorporated by reference, techniques for the synthesis of manufactured genes coding for the amino acid sequence of thaumatin I as identified by lyengar, et al. were disclosed, as were DNA microorganism transformation vectors, fusion genes, transformed micro¬ organisms, the processes for expressing the manufactured' gene and for securing the polypeptide product produced thereby. Specific manufactured genes of the application incorporated a number of codons "preferred" for expression in yeast host cells. In U.S. Patent Application Serial No. 540,634, procedures are also disclosed whereby the thaumatin II coding sequence could be constructed by primer-directed mutagenesis and fragment excision/religation techniques to a manufactured gene encoding the lyengar, et al. thaumatin I sequence. Three amino acid changes (Asn 4 ° to Lys 46 , Ser 63 to Arg 63 and Lys 67 to Arg 67 ) could be accomplished in a single mutagenesis procedure with two primers. The conversion from arginine to glutamine at residue number 76 could be performed in a separate mutagenesis procedure. Still another mutagenesis procedure would be required to effect the change from asparagine to aspartic acid at residue number 113. Alternatively, the changes in amino acid residues 46, 63, 67 and 76 could be effected by synthesis of four oligonucleotide fragments which would be duplexed, polymerized and digested to replace the Kpnl and EcoRI duplex of the sequence in pING301. The change at residue 113 would nevertheless require an in vitro mutagenesis procedure. U.S. Patent Application Serial No. 540,634 also suggests the manufacture of thaumatin analogs. BRIEF SUMMARY Provided by the present invention are manufactured genes capable of directing synthesis in a selected host microorganism of polypeptides having the amino acid sequence of [Asp 11 ] thaumatin I or [Lys 4 ^, Asp 113 ] thaumatin I, i.e. containing the con¬ tinuous sequence of amino acid residues of natural thaumatin I as reported by lyengar, et al. except for an aspartate amino acid residue substituted for asparagine in the 113th position from the amino terminal end of the polypeptide and optionally a lysine amino acid residue substituted for asparagine in the 46th position. In preferred forms of the manufactured genes, the base sequences include one or more codons specifying the same amino acid on the basis of preferential expression characteristics of the codon in a projected host microorganism, e.g., Escherichia coli, Saccharomyces cerevisiae. Other preferred forms of manufactured genes include those wherein: (1) a codon specifies an addi- tional amino acid in the polypeptide synthesized (e.g., ah initial methionine residue) which facilitates direct expression in E. coli microorganisms and/or yeast microorganisms; or (2) at least one termination codon at the end of the manufactured gene to insure proper termination of the polypeptide. In practice of the invention to generate polypeptide products, DNA sequences, including manufactured genes, are inserted into a viral or circular plas id DNA vector to form a hybrid vector and the hybrid vectors are employed to transform host microorganisms such as bacteria (e.g., E. coli) or yeast cells (e.g., S. cerevisiae) . Vectors may also be supplied with appropriate promoter/regulator DNA sequences, allowing for controlled expression in the host microorganism. The transformed microorganisms are thereafter grown under appropriate nutrient conditions and express the polypeptide products of the invention. Other aspects and advantages of the present invention will be apparent upon consideration of the following detailed description thereof. DETAILED DESCRIPTION As employed herein, the term "manufactured" as applied to a DNA sequence or gene shall designate a product either totally chemically and enzymatically- synthesized by assembly of nucleotide bases or derived from the biological replication of a product thus synthesized. As such, the term is exclusive of products "synthesized" by cDNA methods or genomic cloning methodologies which involve starting materials which are initially of biological origin. The following abbreviations shall be employed herein to designate amino acids: Alanine, Ala; Arginine, Arg; Asparagine, Asn; Aspartic acid, Asp; Cysteine, Cys; Glutamine, Gin; Glutamic acid, Glu; Glycine, Gly; Histidine, His; Isoleucine, lie; Leucine, Leu; Lysine, Lys; Methionine, Met; Phenylalanine, Phe; Proline, Pro; Serine, Ser; Threonine, Thr; Tryptophan, Trp; Tyrosine, Tyr; Valine, Val. The following abbreviations shall be employed for nucleotide bases: A for adenine; G for guanine; T for thy ine; U for uracil; and C for cytosine. For ease of understanding of the present invention, Table I below provides a tabular correlation between the 64 alternate triplet nucleotide base codons of DNA and the 20 amino acids and translation termination ("stop") function specified thereby. Table 2 FIRST THIRD POSITION SECOND POSITION POSITION T C A G Phe Ser Tyr Cys T Phe Ser Tyr Cys C T Leu Ser Stop Stop A Leu Ser Stop Trp G Leu Pro His Arg T Leu Pro His Arg C . C Leu Pro Gin Arg A Leu Pro Gin Arg G He Thr Asn Ser T He Thr Asn Ser C A He Thr Lys Arg A Met Thr Lys Arg G Val Ala Asp Gly T Val Ala Asp Gly C G Val Ala Glu Gly A Val Ala Glu Gly G EXAMPLE 1 In this example, 1 mg samples of isolated plant thaumatin I, plant thaumatin II and recombinant yeast produced thaumatin I produced according to the method of co-owned U.S. Patent Application Serial No. 540,634 were reduced and carboxymethylated to irreversibly block all sulfhydryl groups. The samples were reduced for 2 hours at 37° under nitrogen with a ten-fold molar excess of dithiothreitol (DTT) over total protein-SH in 9M urea, 0.1 mM EDTA, 0.1M tris HC1, pH 8.0. After two hours, the protein sulfhydryl groups were quantitatively labelled in the dark for 30 minutes with excess iodoacetic acid. The reaction was quenched by adding excess β-mercaptoethanol and the modified proteins were dialyzed against distilled water, lyophilized to dryness and subjected to tryptic digestion. Each 1 mg sample was dissolved in 1 ml of 50 mM ammonium bicarbonate (pH 8.0-8.4) and digested with 25-40 μg of TPCK trypsin. The mixtures were incubated at 37°C for 12 hours. The trypsin acts to cleave the polypeptide chain on the carboxy terminal side of its lysine and arginine amino acid residues. 100 μg aliquots were removed and lyophilized to dryness. The dried aliquots were then dissolved in 10 μ! of electrophoresis buffer comprising 100 parts by volume pyridine, 8 parts by volume acetic acid and 892 parts water. Samples were spotted onto the middle of thin layer chromatography plates 3cm from the bottom with electrophoresis conditions of 400 volts applied for 120 minutes with tap water cooling. After electro¬ phoresis, the chromatography plates were allowed to air dry overnight and were then developed with a chromato¬ graphy buffer comprising 100 parts by volume butanol, 15 parts by volume acetic acid and 38 parts by volume water. Ascending chromatography was carried out at room temperature for four hours and the plates were then dried by air. After the plates were dry, they were sprayed with a fluorescamine solution, comprising 10 mg fluorescamine dissolved in 1 ml of pyridine and 100 ml 5 acetone, which reacts with the primary amines of the polypeptides to produce intense fluorescence. The two dimensional thin layer electrophoresis/chromatography maps of the tryptic digests of plant thaumatin I and plant thaumatin II expectedly differed with respect to Q . the positions of several peptides. These differences were confirmed by amino acid sequence analysis to correspond to the differences in amino acid residues between the two proteins. Unexpectedly, the two dimen¬ sional maps of the tryptic digests of plant thaumatin I 5 and recombinant yeast produced thaumatin I were found to differ. In general, the relative two-dimensional positions of most of the tryptic peptides from both plant thaumatin I and recombinant thaumatin I were superimposable. One major difference in peptide 0 mobility was observed when peptide maps of the two proteins were compared. The unusual peptide from each chromatogra was eluted with 1 N HC1, lyophilized to dryness, and the sequence determined using an Applied Biosystems Model 470A Protein Sequencer. The following 5 sequences were deduced: Table 3 Plant Thaumatin I NH 2 -Gly-Phe-Asn-Val-Pro-Met-Asp-Phe-Ser-Pro-Thr-Thr-Arg-COOH Recombinant Thaumatin I NH 2 -Gly-Phe-Asn-Val-Pro-Met-Asn-Phe-Ser-Pro-Thr-Thr-Arg-COOH EXAMPLE 2 In this example, 50 ng samples of the tryptic digests of reduced and carboxymethylated plant thaumatin I, plant thaumatin II, and recombinant yeast produced thaumatin I according to the method of Example 1 were analyzed by reverse phase high performance liquid chromatography (HPLC) using an Altex C-18 gel column. Tryptic fragments were eluted with an increasing gradient (3-50%) of acetonitrile over a period of 60 minutes. After 60 minutes, the acetonitrile gradient was increased from 50% to 100% over the course of 5 minutes and the column was then washed with 100% ace¬ tonitrile for 10 minutes before the concentration was reduced to 0% acetonitrile. Approximately 15 major peaks were identified in the profiles of all of the thaumatin samples. The elution profiles of plant thaumatin I and plant thaumatin II were very similar with the exception of minor differences attributable to the known differences in amino acid residues between the two. The elution profiles of plant thaumatin I and recombinant yeast produced thaumatin I were also very similar with but one exception. The 15th major peak in plant thaumatin I which eluted at 32% acetonitrile was shifted in recombinant yeast produced thaumatin I to 29.9%. EXAMPLE 3 In this example, the tryptic peptide which eluted in the 15th major peak (at 32% acetonitrile) from plant thaumatin I in Example 2 was analyzed to determine its amino acid sequence using an Applied Biosystems Model 470A Protein Sequencer. Three μg of a spin vacuum dried sample of the 15th tryptic peptide was resuspended with 35 μl of 100% trifluoroacetic acid. Analyses of the peptide sequence of the plant thaumatin I and of the recombinant yeast produced thaumatin I fraction eluting at 29.9% acetonitrile confirmed the sequences provided in Table 3 of Example 2. The tryptic peptide isolated from the plant thaumatin I corresponds, with one exception, to the twelfth tryptic peptide of the lyengar, et al. published sequence for plant thaumatin I starting at amino acid residue 107 and continuing to amino acid residue 119. The amino acid residue in position number 7 of the plant thaumatin tryptic peptide is aspartic acid (Asp) while that identified by lyengar, et al. is asparagine (Asn). EXAMPLE 4 In this example, samples of plant thaumatin I obtained from Sigma Chemical Co. and another unidentified plant thaumatin analogue were digested and analyzed by reverse phase high performance liquid chromatography (HPLC) according to the technique of Example 2. The elution profiles of the plant thaumatin I and the plant thaumatin analogue differed with respect to one fragment. The fragment was that extending from the 30th to the 49th amino acid residues of the thaumatin I polypeptide. In the thaumatin I polypeptide the 46th residue was asparagine while that in the analogue was identified to be lysine. The amino acid residue in the 113th position was identified as aspartic acid in both polypeptides. EXAMPLE 5 In this example, plasmid pING54 was con¬ structed from three plasmids: pINGl, the construction of which is described in Johnston, et al. , Gene, 34, 137-145 (1985); pUC8 which is described in Messing and Viera, Gene, V_ , 269-276 (1982) and is commercially available; and pING301, a plasmid containing the entire sequence for thaumatin I according to the sequence of lyengar, et al. , the construction of which is described in coowned U.S. Patent Application Serial No. 540,634, Example 5. In this construction, the pINGl plasmid was digested with Xmnl restriction enzyme to yield a first fragment containing two BamHI restriction sites and a second fragment containing a unique Ndel restriction site. The second fragment was then cleaved with restriction enzyme Bgll to develop a third fragment, having the ampicillin resistance gene and a Pstl site. which was deleted. An ampicillin resistant fragment similar to the deleted pINGl fragment but lacking a Pstl site was then isolated from pUC8 using restriction enzymes Bgll and Xmnl. The pUC8 ampicillin resistance fragment was then ligated with the first and second fragments from pINGl with T4 DNA ligase to form a plasmid designated pJHL57. This plasmid was then digested with restriction enzymes BamHI and Ndel to yield a fragment containing an ampicillin resistance gene and non-contiguous portions of the first and second pINGl fragments. Plasmid pING301 was cleaved with restriction enzymes BamHI and Ndel to yield a fragment containing a sequence coding for [Asn 113 ] thaumatin I according to the sequence of lyengar, et. al. The pING301 BamHI/Nd l fragment was then ligated to the BamHI/Ndel fragment from the pJHL57 to form plasmid pING54 containing the thaumatin gene. EXAMPLE 6 In this example, the gene coding for [Asn 113 ] thaumatin I according to the sequence of lyengar, et al. was changed via a site directed mutagenesis to code for an [Asp 113 ] thaumatin I analogue. A mutagenesis primer with the nucleotide sequence (5'-GAGAGAAGTCCATTGGAAC-3 ' ) was chemically synthesized and was passed through a Sephadex G-50 column in a 10 mM solution of triethyl- aminebicarbonate. The fraction containing the mutagenesis primer was then run on an HPLC C18 column using two buffer solutions, one of which was 10 mM triethylamine (buffer A), the other of which was 10 mM triethylamine and 50% acetonitrile (buffer B) . The mutagenesis primer fragment eluted at a 44% concentra¬ tion of buffer B. The peak fraction was collected, dried down and resuspended in 200 μl of an 80% acetic acid solution for 30 minutes at 23°C. The fraction was then spin vacuumed dry and resuspended in 200 μl of water and spin vacuumed dry a second time and resus¬ pended in 50 μl of water. One μl of the solution (at approximately 70 μg/ml) was then treated with T4 kinase in a 10 μl volume. At the same time, plasmid pING54, as described in Example 5, was digested with restriction enzyme Xhol, was blunt-ended with T4 DNA polymerase in the presence of all four deoxyribonucleotide triphosphates (dNTP), and was then digested with restriction enzyme BamHI to yield an approximately 630 base pair fragment encoding [Asn 113 ] thaumatin. The fragment was ligated into the replicative form of commercially available phage M13 mplO (described by Messing, J., Methods in Enzymology, Vol. 101 pp. 20-78 (1983)) which had been digested with restriction enzyme Pstl, subjected to blunt-end treatment with T4 DNA polymerase and was then cut with restriction enzyme BamHI. The M13 phage which contained the desired insert of the thaumatin gene was then designated "Ml3 mplO-thaumatin". After isolation of the mutagenesis primer fragment, 1 μg of the M13 mplO-thaumatin DNA in 1 μl of solution was combined with 2 μl of the kinased primer mixture as well as 1 μl of 10 x polymerization buffer comprising 70 mM Tris-HCl, pH 7.5, 70 mM MgCl 2 , 500 mM NaCl and 9 μl H 0. The solution was heated to a temperature of 65°C for 15 minutes at which point the element of the heating block was turned off and was allowed to cool to room temperature with the tube still in it. Primer elongation was then carried out by adding 1 μl of 0.1M DTT, 1 μl of 25 mM dNTP and 2 units of DNA Polymerase I, Klenow Fragment with 10 μl of water and incubating at 23.°C for 30 minutes. One μl of 100 mM ATP and 0.5 μl T4 ligase were then added and the mixture was incubated at 15°C for 6 hours. E. coli strain 71.18 cells [Gronenbron, B. , Mol. Gen. Genet., Vol. 148, pp. 243-250 (1976), although any F + E. coli strain such as JM101 (ATCC No. 33876) would be suitable] were trans- fected and approximately 300 plaques appeared the next day. A plaque hybridization was performed using a 32 P labelled mutagenesis primer as the probe according to the published protocol [Maniatis, et al. , Molecular Cloning, A Laboratory Manual, Cold Spring Habor Laboratory, 1982]. Washes were then conducted at 62°C (6°C above the melting temperature) to remove the excess probe molecules from the filter. Twelve positive hybridizing plaques were identified by autoradio- graphy. One of the positive plaques was selected, _. diluted by 10^ times and replated on a TYE plate com- prising 15g tryptone, lOg yeast extract and 5g NaCl per liter. A further hybridization was then performed and two positive plaques were selected for sequencing. Both plaques gave the desired sequence for a mutated gene coding for an [Asp 113 ] thaumatin I analogue. One of the phages was then designated "M13 mplO-thaumatin-D. " EXAMPLE 7 In this example, phage M13 mplO-thaumatin-D described in Example 6 was digested with restriction enzymes EcoRI and Hindlll and ligated into the long fragment of an EcoRI and Hindlll digest of pING52, a plasmid containing the entire sequence for thaumatin I according to the sequence of lyengar, et al. and a shortened PGK promoter, the construction of which is described in co-owned and co-pending U.S. Patent Application Serial No. 540,634, Example 10 and co- pending U.S. Application Serial No. (attorney's docket No. A2612-110485) for "Shortened Phosphoglycerate Kinase Promoter." The resultant plasmid was designated pKS-5-2. The pKS-5-2 plasmid was then digested with BamHI and Xhol, and the 850 base pair thaumatin coding sequence was ligated into BamHI and Xhol digested pING58, a plasmid containing a PGK terminator sequence, the construction of which is described in Example 10 of co-owned U.S. Patent Application Serial No. 540,634. The resultant plasmid bearing the sequence for [Asp 113 ] thaumatin I and a shortened PGK promoter and a PGK terminator was designated pING407. EXAMPLE 8 In this example, the gene coding for [Asn 113 ] thaumatin I according to the sequence of lyengar, et al. was changed via insertion of a manufactured gene sequence to code for lysine instead of asparagine at the 46th amino acid residue from the amino terminal end-. A 12 base pair probe coding for lysine instead of asparagine with the nucleotide sequence (CAAGGGTGGTAA) was chemically synthesized as was a 20 base pair complementary fragment having active Kpnl and Bglll restriction sites at its ends (CATGGTTCCCACCATTCTAG) . Plasmid pING52 was treated with Kpnl and Bglll restriction enzymes and T4 ligase so as to insert the 20 base pair double stranded oligomer comprising the 12 base pair and 20 base pair strands into the thaumatin coding region and generate plasmid pING141. The pING141 clones which differ from the pING52 clones by one base pair were identified by using a colony hybridization. The ' 12 base sequence was used as a probe to successfully hybridize the pING141 clones and not the pING52 clones at 37°C. The clones were then sequenced to confirm the change from Asn 46 to Lys 4 . EXAMPLE 9 In this example, a procedure was carried out to recombine the mutations in the genes coding for the [Lys 46 ] thaumatin I analogue and the [Asp 113 ] thaumatin I analogue to form a gene coding for a [Lys 46, As P - thaumatin I analogue with lysine at the 46th amino acid residue from the amino terminal end and aspartic acid at the 113th amino acid residue from the amino terminal end. Plasmid pING141 described in example 8 above coding for the sequence of a [Lys 46 ] thaumatin I analogue was digested with EcoRI and Hindlll to open up the thaumatin coding sequence between the gluta ate residue at position 89 and the lysine residue at position 137. At the same time, phage M-13 plO- thaumatin-D, described in example 6, and coding for an [Asp 3 ] thaumatin I analogue was digested with restriction enzymes EcoRI and Hindlll to isolate the corresponding portion of its sequence. The M-13 mplO- thaumatin-D fragment was then ligated with T4 DNA ligase into the long fragment from the EcoRI and Hindlll digest of pING141 sequence to form plasmid pKS-6 coding for a [Lys , Asp ] thaumatin I analogue. The pKS-6 plasmid was purified in a colony hybridization procedure uti¬ lizing a probe with the sequence (GAGAGAAGTCCATTGGAAC) . The pKS-6 plasmid was then digested with BamHI and Xhol, and the 850 base pair thaumatin coding sequence was ligated into BamHI and Xhol digested pING58. The resultant plasmid bearing the sequence for [Lys , Asp 11 ] thaumatin I and*a shortened PGK promoter sequence and a PGK terminator sequence was designated pING406. EXAMPLE 10 In this example, plasmid pING407 coding for [Asp 3 ] thaumatin I was transformed into S. cerevisiae strain AH22 [ATCC 38626]. Yeast strains carrying the plasmid were cultured in SD(-)leu medium, a synthetic complete medium consisting of nitrogen base without amino acids, 2% glucose, amino acid supplements without leucine, and purine and pyrimidine supplements, since the PGK promoter in the plasmid is constitutive when cells are grown in the presence of glucose as the sole carbon source. Single colony yeast transformants containing plasmid pING407 were innoculated into 15ml of SD(-) leucine broth and grown to saturation at 30°C with vigorous shaking ( 60Qnm approximately 2.1). The saturated cultures were precooled on ice and washed twice with PBS before lysis. One mi of lysis buffer (20 mM Tris-Cl, 1% SDS, pH 7.2) was added to each 0.5 g of the cells prepared above and the suspension was boiled for 10 minutes to achieve cell breakage. The samples were then centrifuged at 14000 x g to clarify the supernatent. This was subsequently analyzed by electrophoresis through a 15% discontinuous SDS-polyacryla ide gel (SDS- PAGE) . The recombinant thaumatin was identified by ι comigration of a thaumatin standard and was measured by a variation of the method of Lowry. et al. , J.Biol.Chem., 193, 265-275 (1951) with crystalline bovine serum albumin as a standard. Recombinant [Asp ] thaumatin I isolated by the above procedure was in a denatured, biologically inactive form which was not sweet. The material was then subjected to the refolding procedure of co-owned and co-pending U.S. Patent Application Serial No. (attorney's docket no. 7450) for "Method for Isolation of Recombinant Polypeptides in Biologically Active Forms," the disclosure of which is hereby incorporated by reference. A portion of the material was successfully refolded to its native conformation and was found to elicit.a sweet taste sensation upon concentration. EXAMPLE 11 In this example, plasmid pING406 coding for [Lys , Asp 1 ] thaumatin I was transformed into S. cerevisiae strain AH22 [ATCC 38626]. Yeast strains carrying the plasmid were cultured in SD(-)leu medium, a synthetic complete medium consisting of nitrogen base without amino acids, 2% glucose, amino acid supplements without leucine, and purine and pyrimidine supplements. since the PGK promoter in the plasmid is constitutive when cells are grown in the presence of glucose as the sole carbon source. Single colony yeast transformants containing plasmid pING407 were innoculated into 15ml of SD(-) leucine broth and grown to saturation at 30°C with vigorous shaking (Aδoonm a PP r <->ximately 2.1). The saturated cultures were precooled on ice and washed twice with PBS before lysis. One ml of lysis buffer (20 mM Tris-Cl, 1% SDS, pH 7.2) was added to each 0.5 g of the cells prepared above and the suspension was boiled for 10 minutes to achieve cell breakage. The samples were then ,. centrifuged at 14000 x g to clarify the supernatent. This was subsequently analyzed by electrophoresis through a 15% discontinuous SDS-polyacrylamide gel (SDS- PAGE) . The recombinant thaumatin was identified by comigration of a thaumatin standard and was measured by a variation of the method of Lowry. et al. - J.Biol.Chem. , 193, 265-275 (1951) with crystalline bovine serum albumin as a standard. Recombinant [Lys , Asp ] thaumatin I isolated by the above procedure was in a denatured, biologically inactive form which was not sweet. The material was then subjected to the refolding procedure of co-owned and co-pending U.S. Patent Application Serial No. (attorney's docket no. 7450) the disclosure of which is hereby incorporated by reference. A portion of the material was successfully refolded to its native conformation and was found to elicit a sweet taste sensation without concentration. Numerous modifications and variations in the invention are expected to occur to those skilled in the art upon consideration of the foregoing description. As one example, while the foregoing illustrated example is directed to site-directed mutagenesis of a DNA sequence to alter a 5' - AAC - 3' codon specifying asparagine to a 5' - GAC - 3' codon specifying aspartic acid, an [Asp ] thaumatin I gene of the invention could be developed wherein the pertinent aspartic acid residue was encoded by 5' -GAT -3' . Consequently, only such limitations as appear in the following claims should be placed upon the invention.

Claims: WHAT IS CLAIMED IS: 1. A gene capable of directing the synthesis in a selected host microorganism of [Asp _ 1 J ~ ] Thaumatin 5 I. 2. A gene according to claim 1 wherein the gene is a manufactured gene. 3. A gene according to claim 2 wherein the base sequence includes one or more codons selected from 10 among alternative codons specifying the same amino acid on the basis of preferential expression characteristics of the codon in E. coli. 4. A gene according to claim 2 wherein the base sequence includes one or more codons selected from 15 among alternative codons specifying the same amino acid on the basis of preferential expression characteristics of the codon in Saccharo yces cerevisiae. 5. A gene according to claim 1 comprising the following sequence of nucleotide bases in the coding 20 strand thereof: 1 10 Ala Thr Phe Glu He Val Asn Arg Cys Ser. Tyr Thr Val 5'-GCT ACC TTC GAA ATC GTT AAC AGA TGT TCT TAC ACT GTT 20 - ς Trp Ala Ala Ala Ser Lys Gly Asp Ala Ala Leu Asp Ala Gly TGG GCT GCT GCT TCC AAG GGT GAC GCT GCT TTG GAC GCC GGT 30 40 Gly Arg Gin Leu Asn Ser Gly Glu Ser Trp Thr He Asn Val GGT AGA CAA TTG AAC TCT GGT GAA TCC TGG ACC ATC AAC GTC 50 30 Glu Pro Gly Thr Asn Gly Gly Lys He Trp Ala Arg Thr Asp GAA CCA GGT ACC AAC GGT GGT AAG ATC TGG GCT AGA ACC GAC 60 Cys Tyr Phe Asp Asp Ser Gly Ser Gly He Cys Lys Thr Gly TGT TAC TTC GAT GAC TCT GGT TCC GGT ATC TGT AAG ACT GGT 35 70 80 Asp Cys Gly Gly Leu Leu Arg Cys Lys Arg Phe Gly Arg Pro GAC TGT GGT GGT TTG TTG AGA TGT AAG AGA TTC GGT AGA CCA 90 Pro Thr Thr Leu Ala Glu Phe Ser Leu Asn Gin Tyr Gly Lys CCA ACC ACT TTG GCT GAA TTC TCT TTG AAC CAA TAC GGT AAG 100 110 Asp Tyr He Asp He Ser Asn He Lys Gly Phe Asn Val Pro GAC TAC ATC GAT ATC TCC AAC ATC AAG GGT TTC AAC GTT CCA 120 Met Asp Phe Ser Pro Thr Thr Arg Gly Cys Arg Gly Val Arg ATG GAC TTC TCT CCA ACC ACT AGA GGT TGT AGA GGC GTC AGA 130 Cys Ala Ala Asp He Val Gly Gin Cys Pro Ala Lys Leu Lys TGT GCT GCT GAC ATC GTT GGT CAA TGT CCA GCT AAG CTT AAG 140 150 Ala Pro Gly Gly Gly Cys Asn Asp Ala Cys Thr Val Phe' _ Gln GCT CCA GGT GGT GGT TGT AAC GAC GCT TGT ACC GTT TTC CAA 160 Thr Ser Glu Tyr Cys Cys Thr Thr Gly Lys Cys Gly Pro Thr ACT TCC GAA TAC TGT TGT ACC ACT GGT AAG TGT GGT CCA ACC 170 180 Glu Tyr Ser Arg Phe Phe Lys Arg Leu Cys Pro Asp Ala Phe GAA TAC TCT AGA TTC TTC AAG AGA TTG TGT CCA GAC GCT TTC 190 Ser Tyr Val Leu Asp Lys Pro Thr Thr Val Thr Cys Pro Gly TCC TAC GTC TTG GAC AAG CCA ACT ACC GTC ACT TGT CCA GGT 200 Ser Ser Asn Tyr Arg Val Thr Phe Cys Pro Thr Ala TCT TCC AAC TAC AGA GTT ACC TTC TGT CCA ACT GCC-3 ' . 6. A gene capable of directing the synthesis in a selected host microorganism of [Lys , Asp ] Thaumatin I. 7. A gene according to claim 6 wherein the gene is a manufactured gene. 8. A gene according to claim 7 wherein the base sequence includes one or more codons selected from among alternative codons specifying the same amino acid on the basis of preferential expression characteristics of the codon in E. coli. 9. A gene according to claim 7 wherein the base sequence includes one or more codons selected from among alternative codons specifying the same amino acid on the basis of preferential expression characteristics of the codon in Saccharomyces cerevisiae. 10. A gene according to claim 1 comprising the following sequence of nucleotide bases in the coding strand thereof: 1 . 10 Ala Thr Phe Glu He Val Asn Arg Cys Ser Tyr Thr Val 5'-GCT ACC TTC GAA ATC GTT AAC AGA TGT TCT TAC ACT GTT 20 Trp Ala Ala Ala Ser Lys Gly Asp Ala Ala Leu Asp Ala- Gly TGG GCT GCT GCT TCC AAG GGT GAC GCT GCT TTG GAC GCC GGT 30 40 Gly Arg Gin Leu Asn Ser Gly Glu Ser Trp Thr He Asn Val GGT AGA CAA TTG AAC TCT GGT GAA TCC TGG ACC ATC AAC GTC 50 Glu Pro Gly Thr Lys Gly Gly Lys He Trp Ala Arg Thr Asp GAA CCA GGT ACC AAG GGT GGT AAG ATC TGG GCT AGA ACC GAC 60 Cys Tyr Phe Asp Asp Ser Gly Ser Gly He Cys Lys Thr Gly TGT TAC TTC GAT GAC TCT GGT TCC GGT ATC TGT AAG ACT GGT 70 80 Asp Cys Gly Gly Leu Leu Arg Cys Lys Arg Phe Gly Arg Pro GAC TGT GGT GGT TTG TTG AGA TGT AAG AGA TTC GGT AGA CCA 90 Pro Thr Thr Leu Ala Glu Phe Ser Leu Asn Gin Tyr Gly Lys CCA ACC ACT TTG GCT GAA TTC TCT TTG AAC CAA TAC GGT AAG 100 110 Asp Tyr He Asp He Ser Asn He Lys Gly Phe Asn Val Pro GAC TAC ATC GAT ATC TCC AAC ATC AAG GGT TTC AAC GTT CCA 120 Met Asp Phe Ser Pro Thr Thr Arg Gly Cys Arg Gly Val Arg ATG GAC TTC TCT CCA ACC ACT AGA GGT TGT AGA GGC GTC AGA 130 Cys Ala Ala Asp He Val Gly Gin Cys Pro Ala Lys Leu Lys TGT GCT GCT GAC ATC GTT GGT CAA TGT CCA GCT AAG CTT AAG 140 150 Ala Pro Gly Gly Gly Cys Asn Asp Ala Cys Thr Val Phe Gin GCT CCA GGT GGT GGT TGT AAC GAC GCT TGT ACC GTT TTC CAA 160 Thr Ser Glu Tyr Cys Cys Thr Thr Gly Lys Cys Gly Pro Thr b ACT TCC GAA TAC TGT TGT ACC ACT GGT AAG TGT GGT CCA ACC 170 180 Glu Tyr Ser Arg Phe Phe Lys Arg Leu Cys Pro Asp Ala Phe GAA TAC TCT AGA TTC TTC AAG AGA TTG TGT CCA GAC GCT TTC 190 Ser Tyr Val Leu Asp Lys Pro Thr Thr Val Thr Cys Pro Gly 1Q TCC TAC GTC TTG GAC AAG CCA ACT ACC GTC ACT TGT CCA GGT 200 Ser Ser Asn Tyr Arg Val Thr Phe Cys Pro Thr Ala TCT TCC AAC TAC AGA GTT ACC TTC TGT CCA ACT GCC-3' . __. 11. A biologically functional DNA , 5 microorganism transformation vector including a gene capable of directing the synthesis in a selected host microorganism of [Asp ] Thaumatin I. 12. A biologically functional DNA microorganism transformation vector including a gene 20 capable of directing the synthesis in a selected host microorganism of [Lys , Asp ] Thaumatin I. 13. A microorganism transformed with a vector including a gene capable of directing the synthesis of [Asp 113 ] Thaumatin I. _ 5 14. A microorganism transformed with a vector including a gene capable of directing the synthesis of [Lys 46 , Asp 113 ] Thaumatin I. 15. The microorganisms of claims 13 or 14 which are E. coli microorganisms. 2 Q 16. The microorganisms of claims 13 or 14 which are Saccharomyces cerevisiae microorganisms. 17. A process for the production of [Asp 113 ] Thaumatin I comprising: growing under appropriate nutrient conditions, , g microorganisms transformed with biologically functional DNA including a gene directing the synthesis of [Asp 13 ] Thaumatin I, whereby said microorganisms express said gene and produce [Asp 113 ] Thaumatin I. 18. A process for the production of [Lys 46 , Asp 113 ] Thaumatin I comprising: growing under appropriate nutrient conditions, microorganisms transformed with biologically functional DNA including a gene directing the synthesis of [Lys 46 , Asp 1 3 ] Thaumatin I, whereby said microorganisms express said gene and produce [Lys 46 , Asp 113 ] Thaumatin I. 19. The processes according to claims 17 or 18 wherein said microorganisms are E. coli microorganisms. 20. The processes according to claims 17 or 18 wherein said microorganisms are Saccharomyces cerevisiae microorganisms. 21. A polypeptide product of the expression in a microorganism of a gene coding for [Asp 113 ] Thaumatin I. 22. A polypeptide product of the expression in a microorganism of a gene coding for [Lys 46 , Asp 113 ] Thaumatin I.

Inventors: GHOSH-DASTIDAR PRADIP, WEICKMANN JOACHIM LUDWIG, GHOSH-DASTIDAR, PRADIP, WEICKMANN, JOACHIM, LUDWIG
Applicants: BEATRICE CO INC, BEATRICE COMPANIES, INC.
Application year: 1986
Main classification: C12P21
IPC codes: A23L1, C07K14, C12N1, C12N15, C12P21, C12R1