The apartment is next to a university coffee shop, which has low prices for a good breakfast.
It's also very close to Santa Apolónia train station where you can take trains to Évora, Coimbra and many other places.
Take a moment to read the "welcome book" that Andreia provides, it's very helpful and complete. Even if you have already planned your trip, I'm sure you can improve it a little bit with the informations there.