3 Presidency (1801–1809) Main article: Presidency of Thomas Jefferson. 3 Presidency (1801–1809) Main article: Presidency of Thomas Jefferson. The Jefferson CabinetOfficeNameTermPresidentThomas Jefferson1801–1809Vice PresidentAaron Burr1801–1805George Clinton1805–1809Secretary of StateJames Madison1801–1809Secretary of TreasurySamuel Dexter1801Albert Gallatin1801–1809Secretary of WarHenry Dearborn1801–1809Attorney GeneralLevi Lincoln Sr.1801–1804John Breckinridge1805–1806Caesar A. Rodney1807–1809Secretary of the NavyBenjamin Stoddert1801Robert Smith1801–1809. The Jefferson CabinetOfficeNameTermPresidentThomas Jefferson1801–1809Vice PresidentAaron Burr1801–1805George Clinton1805–1809Secretary of StateJames Madison1801–1809Secretary of TreasurySamuel Dexter1801Albert Gallatin1801–1809Secretary of WarHenry Dearborn1801–1809Attorney GeneralLevi Lincoln Sr.1801–1804John Breckinridge1805–1806Caesar A. Rodney1807–1809Secretary of the NavyBenjamin Stoddert1801Robert Smith1801–1809. The Jefferson CabinetOfficeNameTermPresidentThomas Jefferson1801–1809Vice PresidentAaron Burr1801–1805George Clinton1805–1809Secretary of StateJames Madison1801–1809Secretary of TreasurySamuel Dexter1801Albert Gallatin1801–1809Secretary of WarHenry Dearborn1801–1809Attorney GeneralLevi Lincoln Sr.1801–1804John Breckinridge1805–1806Caesar A. Rodney1807–1809Secretary of the NavyBenjamin Stoddert1801Robert Smith1801–1809.