Purpose: In surgical navigation, pre-operative organ models are presented to surgeons during the intervention to help them in efficiently finding their target. In the case of soft tissue, these models need to be deformed and adapted to the current situation by using intra-operative sensor data. A promising method to realize this are real-time capable biomechanical models. Methods: We train a fully convolutional neural network to estimate a displacement field of all points inside an organ when given only the displacement of a part of the organ's surface. The network trains on entirely synthetic data of random organ-like meshes, which allows us to generate much more data than is otherwise available. The input and output data is discretized into a regular grid, allowing us to fully utilize the capabilities of convolutional operators and to train and infer in a highly parallelized manner. Results: The system is evaluated on in-silico liver models, phantom liver data and human in-vivo breathing data. We test the performance with varying material parameters, organ shapes and amount of visible surface. Even though the network is only trained on synthetic data, it adapts well to the various cases and gives a good estimation of the internal organ displacement. The inference runs at over 50 frames per second. Conclusions: We present a novel method for training a data-driven, real-time capable deformation model. The accuracy is comparable to other registration methods, it adapts very well to previously unseen organs and does not need to be re-trained for every patient. The high inferring speed makes this method useful for many applications such as surgical navigation and real-time simulation.
Our method is inspired by the work of @cite_21 , who have used neural networks to estimate the results of fluid dynamics simulations for real-time applications. One major difference is that fluid dynamics are often computed on regular grids with a fixed number of cells which makes them easier to handle with neural networks. In contrast to this, we need to re-sample the irregular simulation domain before we pass the data to the network.
@cite_21
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Physically based fluid simulation requires much time in numerical calculation to solve Navier-Stokes equations. Especially in grid-based fluid simulation, because of iterative computation, the projection step is much more time-consuming than other steps. In this paper, we propose a novel data-driven projection method using an artificial neural network to avoid iterative computation. Once the grid resolution is decided, our data-driven method could obtain projection results in relatively constant time per grid cell, which is independent of scene complexity. Experimental results demonstrated that our data-driven method drastically speeded up the computation in the projection step. With the growth of grid resolution, the speed-up would increase strikingly. In addition, our method is still applicable in different fluid scenes with some alterations, when computational cost is more important than physical accuracy. Copyright © 2016 John Wiley & Sons, Ltd. This study derives geometric, variational discretization of continuum theories arising in fluid dynamics, magnetohydrodynamics (MHD), and the dynamics of complex fluids. A central role in these discretizations is played by the geometric formulation of fluid dynamics, which views solutions to the governing equations for perfect fluid flow as geodesics on the group of volume-preserving diffeomorphisms of the fluid domain. Inspired by this framework, we construct a finite-dimensional approximation to the diffeomorphism group and its Lie algebra, thereby permitting a variational temporal discretization of geodesics on the spatially discretized diffeomorphism group. The extension to MHD and complex fluid flow is then made through an appeal to the theory of Euler–Poincare systems with advection, which provides a generalization of the variational formulation of ideal fluid flow to fluids with one or more advected parameters. Upon deriving a family of structured integrators for these systems, we test their performance via a numerical implementation of the update schemes on a cartesian grid. Among the hallmarks of these new numerical methods are exact preservation of momenta arising from symmetries, automatic satisfaction of solenoidal constraints on vector fields, good long-term energy behavior, robustness with respect to the spatial and temporal resolution of the discretization, and applicability to irregular meshes. Abstract An account is offered to change over time in English verb morphology, based on a connectionist approach to how morphological knowledge is acquired and used. A technique is first described that was developed for modeling historical change in connectionist networks, and that technique is applied to model English verb inflection as it developed from the highly complex past tense system of Old English towards that of the modern language, with one predominant “regular” inflection and a small number of irregular forms. The model relies on the fact that certain input-output mappings are easier than others to learn in a connectionist network. Highly frequent patterns, or those that share phonological regularities with a number of others, are learned more quickly and with lower error than low-frequency, highly irregular patterns. A network is taught a data set representative of the verb classes of Old English, but learning is stopped before reaching asymptote, and the output of this network is used as the teacher of a new net. As a result, the errors in the first network were passed on to become part of the data set of the second. Those patterns that are hardest to learn led to the most errors, and over time are “regularized” to fit a more dominant pattern. The results of the networks simulations were highly consistent with the major historical developments. These results are predicted from well-understood aspects of network dynamics, which therefore provide a rationale for the shape of the attested changes. We present an optimization-based motion planning algorithm to compute a smooth, collision-free trajectory for a manipulator used to transfer a liquid from a source to a target container. We take into account fluid dynamics constraints as part of the trajectory computation. In order to avoid the high complexity of exact fluid simulation, we introduce a simplified dynamics model based on physically inspired approximations and system identification. Our optimization approach can incorporate various other constraints such as collision avoidance with obstacles, kinematic and dynamics constraints of the manipulator, and fluid dynamics characteristics. We demonstrate the performance of our planner on different benchmarks corresponding to various obstacles and container shapes. We also evaluate its accuracy by validating the motion plan using an accurate but computationally costly Navier-Stokes fluid simulation.