6 International Journal of Plant Genomics (a) (b) Figure 5: Resequencing interface. The workspace interface environment allows for more complex, batch searches of EST, annotation, traceﬁle, PCR primer, amplicon sequence, SNP, DNA extraction, and tree sample data types (http://dendrome.ucdavis.edu/interface/). Users can initiate searches based on any of these data types. The data retrieved can be compiled into customized lists, saved for future searches, and downloaded to a local machine for further analysis. LIST OF ABBREVIATIONS EST: Expressed sequence tag GUI: Graphical user interface GO: Gene ontology PHP: Hypertext preprocessor PO: Plant ontology SNP: Single nucleotide polymorphism REFERENCES [1] M. R. Ahuja and D. B. Neale, “Evolution of genome size in conifers,” Silvae Genetica, vol. 54, no. 3, pp. 126–137, 2005. [2] D. Ware, P. Jaiswal, J. Ni, et al., “Gramene: a resource for comparative grass genomics,” Nucleic Acids Research, vol. 30, no. 1, pp. 103–105, 2002. [3] J. M. Lee, G. F. Davenport, D. Marshall, et al., “GERMINATE. A generic database for integrating genotypic and phenotypic information for plant genetic resource collections,” Plant Physiology, vol. 139, no. 2, pp. 619–631, 2005. [4] D. A. Benson, I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and D. L. Wheeler, “GenBank: update,” Nucleic Acids Research, vol. 32, database issue, pp. D23–D26, 2004. [5] L. D. Stein, C. Mungall, S. Shu, et al., “The generic genome browser: a building block for a model organism system data- base,” Genome Research, vol. 12, no. 10, pp. 1599–1610, 2002.