Zhang et al. BMC Genomics 2011, 12:63 http://www.biomedcentral.com/1471-2164/12/63 Page 11 of 20 Table 3 Citrus unigenes that share homology to flowering-time genes of other plants (Continued) U767 2311 U17929 1689 U14324 3620 U12966 1832 U8773 1681 U17262 1894 U11331 1533 U17602 1306 U23612 1156 U8880 1600 U7754 1102 U9616 1943 U9937 953 U34190 1385 U12018 1939 U11876 2468 U2303 1580 Autonomous pathway U15708 416 U13760 1112 U9139 2236 U32661 983 U20071 955 Floral pathway integrator U19004 346 U3347 353 U1570 283 U27861 691 U27120 303 U17717 1389 U2713 1871 U17161 836 U8846 1586 U36503 1822 U9364 1051 U2300 1394 Other flowering genes U5505 430 U13903 870 U1579 1210 U6983 545 U34186 773 U24167 336 U12163 996 U217 490 U9295 1938 U8625 2045 U20726 1826 U12861 1107 U23896 275 U24321 344 U4356 1096 257 828 950 396 1784 191 813 951 148 512 273 550 38 121 288 769 677 21 593 883 8 126 6 22 8 43 12 1066 799 1317 2570 849 128 589 23 147 152 908 14 9 276 22 2427 400 257 443 11 14 319 227 767 928 399 1643 161 846 885 117 515 191 469 41 129 248 751 580 23 591 868 8 82 3 8 6 12 0 1165 962 1623 1905 875 123 840 13 137 93 706 35 5 85 31 2378 316 166 679 3 5 190 XM_002266277 NM_113199 XM_002520611 EU884426 EF064791 EF064791 EF064792 NM_119129 NM_112785 NM_112785 NM_112785 NM_102836 GQ177180 NM_179890 NM_121191 XM_002281643 NM_112965 XM_002519206 XM_002519206 AK229352 AK229352 AK229352 EU032531 EU032532 EU032532 AB301935 AY338974 DQ371898 NM_001125127 FJ719767 GQ864262 GQ864265 GQ864265 GQ864263 U78949 DQ500880 XM_002301057 AB218613 AB218614 AB218611 AB218612 NM_001084836 NM_101733 NM_105623 XM_002326128 FJ809943 AY256859 GU357461 AB218614 289/452 (63%) 926/1232 (75%) 621/839 (74%) 937/1258 (74%) 81/111 (72%) 218/294 (74%) 665/963 (69%) 713/967 (73%) 38/47 (80%) 284/384 (73%) 127/183 (69%) 748/1086 (68%) 86/120 (71%) 176/259 (67%) 63/81 (77%) 1519/2012 (75%) 784/1037 (75%) 146/185 (78%) 146/185 (78%) 75/97 (77%) 75/97 (77%) 75/97 (77%) 167/170 (98%) 343/353 (97%) 244/281 (86%) 672/695 (96%) 298/303 (98%) 340/433 (78%) 279/375 (74%) 538/716 (75%) 250/360 (69%) 114/140 (81%) 92/129 (71%) 116/147 (78%) 331/396 (83%) 470/617 (76%) 526/669 (78%) 543/545 (99%) 440/551 (79%) 286/336 (85%) 677/686 (98%) 78/96 (81%) 308/390 (78%) 343/487 (70%) 450/604 (74%) 818/820 (99%) 210/277 (75%) 218/335 (65%) 627/636 (98%) 8E-51 0 2E-144 0 9E-05 4E-41 1E-97 5E-171 1.4 1E-59 6E-11 5E-110 1E-06 2E-13 7E-07 0 0 4E-33 4E-33 2E-10 2E-10 2E-10 5E-76 4E-166 2E-98 0 1E-145 5E-96 9E-56 4E-132 2E-32 4E-28 4E-07 6E-25 2E-114 4E-126 2E-156 0 2E-136 0 0 1E-15 9E-88 1E-55 7E-102 0 3E-45 2E-11 0 FRI (Ricinus communis) LFR (Arabidopsis thaliana) LUM (Ricinus communis) VRN2-1 (Malus × domestica) VIN3-1 (Arabidopsis thaliana) VIN3-1 (Arabidopsis thaliana) VIN3-2 (Arabidopsis thaliana) VIP3 (Arabidopsis thaliana) VRN1 (Arabidopsis thaliana) VRN1 (Arabidopsis thaliana) VRN1 (Arabidopsis thaliana) SUF4 (Arabidopsis thaliana) FES1 (Arabidopsis thaliana) FES1 (Arabidopsis thaliana) EMF1 (Arabidopsis thaliana) EMF2 (Vitis vinifera) FIE (Arabidopsis thaliana) FCA (Ricinus communis) FCA (Ricinus communis) FCA (Arabidopsis thaliana) FCA (Arabidopsis thaliana) FCA (Arabidopsis thaliana) SOC1-1 (Citrus sinensis) SOC1- 2 (Citrus sinensis) SOC1-2 (Citrus sinensis) CiFT (Citrus unshiu) AP1 (Citrus sinensis) CO2 (Glycine max) CO9 (Arabidopsis thaliana) CO (Mangifera indica) CO8 (Glycine max) CO (Glycine max) CO (Glycine max) CO9 (Glycine max) MADS3 (Malus domestica) MADS3 (Populus tomentosa) MADS9 (Populus tomentosa) CitMADS6 (Citrus unshiu) CitMADS8 (Citrus unshiu) CitMADS3 (Citrus unshiu) CitMADS5 (Citrus unshiu) AGL16 (Arabidopsis thaliana) AGL65 (Arabidopsis thaliana) AGL94 (Arabidopsis thaliana) AP2 (Populus trichocarpa) AP2 (Poncirus trifoliata) AP1 (Vitis vinifera) SEP1 (Euptelea pleiosperma) CitMADS8 (Citrus unshiu)