BMC Genomics 2009, 10:1 http://www.biomedcentral.com/1471-2164/10/1 37. Ekman J, Bylin A, Tegeström H: Increased lifetime reproductive success for Siberian jay (Perisoreus infaustus) males with delayed dispersal. Proceedings of the Royal Society B: Biological Sci- ences 1999, 266:911-915. 38. Ekman J, Baglione V, Eggers S, Griesser M: Delayed dispersal: living under the region of nepotistic parents. Auk 2001, 118:1-10. 39. Griesser M, Ekman J: Nepotistic alarm calling in Siberian jay, Perisoreus infaustus. Animal Behaviour 2004, 67:933-939. 40. Lillandt BG, Bensch S, von Schantz T: Family structure in the Siberian jay as revealed by microsatellite analyses. Condor 2003, 105:505-514. 41. Eggers S, Griesser M, Ekman J: Predator-induced plasticity in nest visitation rates in the Siberian jay (Perisoreus infaustus). Behavioral Biology 2004, 16:309-315. 42. Alho JS, Lillandt BG, Jaari S, Merilä J: Multilocus heterozygosity and inbreeding in the Siberian jay. Conservation Genetics 2009. 43. Feder M, Mitchell-Olds T: Evolutionary and ecological func- tional genomics. Nature Reviews Genetics 2003, 4:651-657. 44. Jaari S, Välimäki K, Merilä J: Isolation and characterization of 100 microsatellite primers for the Siberian jay (Perisoreus infaus- tus). Molecular Ecology Resources 2008, 8:1469-1474. 45. International Chicken Genome Sequencing Consortium: Sequenc- ing and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716. 46. van Tuinen M, Sibley CG, Hedges SB: The early history of modern birds inferred from DNA sequences of nuclear and mito- chondrial ribosomal genes. Molecular Biology and Evolution 2000, 17:451-457. 47. Barker FK, Barrowclough GF, Groth JG: A phylogenetic hypothe- sis for passerine birds: taxonomic and biogeographic impli- cations of an analysis of nuclear DNA sequence data. Proceedings of the Royal Society B: Biological Sciences 2002, 269:295-308. 48. Treplin S: Inference of phylogenetic relationships in passerine birds (Aves: Passeriformes) using new molecular markers. In PhD thesis The University of Potsdam; 2006. 49. Singer A, Perlman H, Yan Y, Walker C, Corley-Smith G, Brandhorst B, Postlethwait J: Sex-specific recombination rates in zebrafish (Danio rerio). Genetics 2002, 160:649-657. 50. Schmitt K, Lazzeroni LC, Foote S, Vollrath D, Fisher EM, Goradia TM, Lange K, Page DC, Arnheim N: Multipoint linkage map of the human pseudoautosomal region based on single-sperm typ- ing: do double crossovers occur during male meiosis? Ameri- can Journal of Human Genetics 1994, 55:423-430. 51. Galloway SM, Hanrahan V, Dodds KG, Potts MD, Crawford AM, Hill DF: A linkage map of the ovine X chromosome. Genome Research 1996, 6:667-677. 52. Sonstegard TS, Lopez-Corrales NL, Kappes SM, Stone RT, Ambady S, Ponce de León FA, Beattie CW: An integrated genetic and phys- ical map of the bovine X chromosome. Mammalian Genome 1997, 8:16-20. 53. Hackett CA, Broadfoot LB: Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps. Heredity 2003, 90:33-38. 54. Groenen MA, Cheng HH, Bumstead N, Benkel BF, Briles WE, Burke T, Burt DW, Crittenden LB, Dodgson J, Hillel J, Lamont S, de Leon AP, Soller M, Takahashi H, Vignal A: A consensus linkage map of the chicken genome. Genome Research 2000, 10:137-147. 55. Primmer CR, Raudsepp T, Chowdhary BP, Møller AP, Ellegren H: Low frequency of microsatellites in the avian genome. Genome Research 1997, 7:471-482. 56. Groenen MA, Crooijmans RP, Veenendaal A, Cheng HH, Siwek M, Poel JJ van der: A comprehensive microsatellite linkage map of the chicken genome. Genomics 1998, 49:265-274. 57. Neff MW, Broman KW, Mellersh CS, Ray K, Acland GM, Aguirre GD, Ziegle JS, Ostrander EA, Rine J: A second-generation genetic linkage map of the domestic dog, Canis familiaris. Genetics 1999, 151:803-820. 58. Kayang BB, Vignal A, Inoue-Murayama M, Miwa M, Monvoisin JL, Ito S, Minvielle F: A first-generation microsatellite linkage map of the Japanese quail. Animal Genetics 2004, 35:195-200. 59. May B, Johnson KR: Composition linkage map of salmonid fishes (Salvelinus, Salmo and Oncorhynchus). In Genetic Maps: Locus Maps of Complex Genomes Edited by: O'Brien SJ. New York: Cold Spring Harbor; 1990:151-159. 60. Young WP, Wheeler PA, Coryell VH, Keim P, Thorgaard GH: A detailed linkage map of rainbow trout produced using dou- ble haploids. Genetics 1998, 148:839-850. 61. Sonstegard TS, Barendse W, Bennett GL, Brockmann GA, Davis S, Droegemuller C, Kalm E, Kappes SM, Kühn C, Li Y, Schwerin M, Tay- lor J, Thomsen H, van Tassell CP, Yeh CC: Consensus and com- prehensive linkage maps of the bovine sex chromosomes. Animal Genetics 2001, 32:105-121. 62. Maddox JF, Davies KP, Crawford AM, Hulme DJ, Vaiman D, Cribiu EP, Freking BA, Beh KJ, Cockett NE, Kang N, Riffkin CD, Drinkwater R, Moore SS, Dodds KG, Lumsden JM, van Stijn TC, Phua SH, Adelson DL, Burkin HR, Broom JE, Buitkamp J, Cambridge L, Cushwa WT, Gerard E, Galloway SM, Harrison B, Hawken RJ, Hiendleder S, Henry HM, Medrano JF, Paterson KA, Schibler L, Stone RT, van Hest B: An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Research 2001, 11:1275-1289. 63. Hubert S, Hedgecock D: Linkage Maps of Microsatellite DNA Markers for the Pacific Oyster Crassostrea gigas. Genetics 2004, 168:351-362. 64. Matise TC, Chen F, Chen W, De La Vega FM, Hansen M, He C, Hyland FC, Kennedy GC, Kong X, Murray SS, Ziegle JS, Stewart WC, Buyske S: A second-generation combined linkage physical map of the human genome. Genome Research 2007, 17:1783-1786. 65. Handley LJ, Ceplitis H, Ellegren H: Evolutionary strata on the chicken Z chromosome: implication for sex chromosome evolution. Genetics 2004, 167:367-376. 66. Sundström H, Webster MT, Ellegren H: Reduced variation on the chicken Z chromosome. Genetics 2004, 167:377-385. 67. Ellegren H, Hultin-Rosenberg L, Brunström B, Dencker L, Kultima K, Scholz B: Faced with inequality: chicken do not have a general dosage compensation of sex-linked genes. BMC Biology 2007, 5:40. 68. Storchová R, Divina P: Non-random representation of sex- biased genes on chicken Z chromosome. Journal of Molecular Evolution 2006, 63:676-681. 69. Broman KW, Rowe LB, Churchill GA, Paigen K: Crossover inter- ference in the mouse. Genetics 2002, 160:1123-1131. 70. Montell H, Fridolfsson AK, Ellegren H: Contrasting levels of nucleotide diversity on the avian Z and W sex chromo- somes. Molecular Biology and Evolution 2001, 18:2010-2016. 71. Lynn A, Kashuk C, Petersen MB, Bailey JA, Cox DR, Antonarakis SE, Chakravarti A: Patterns of meiotic recombination on the long arm of human chromosome 21. Genome Research 2000, 10:1319-1332. 72. Solignac M, Mougel F, Vautrin D, Monnerot M, Cornuet JM: A third- generation microsatellite-based linkage map of the honey bee, Apis mellifera, and its comparison with the sequence- based physical map. Genome Biology 2007, 8:R66. 73. Zenger KR, McKenzie LM, Cooper DW: The first comprehensive genetic map of a marsupial: the tammar wallaby (Macropus eugenii). Genetics 2002, 162:321-330. 74. Samollow PB, Kammerer CM, Mahaney SM, Schneider JL, Westen- berger SJ, VandeBerg JL, Robinson ES: First-generation linkage map of the gray, short-tailed opossum, Monodelphis domes- tica, reveals genome-wide reduction in female recombina- tion rates. Genetics 2004, 166:307-329. 75. Kai W, Kikuchi K, Fujita M, Suetake H, Fujiwara A, Yoshiura Y, Oto- take M, Venkatesh B, Miyaki K, Suzuki Y: A genetic map for the tiger pufferfish, Takifugu rubripes. Genetics 2005, 171:227-238. 76. Bouza C, Hermida M, Pardo BG, Fernández C, Fortes GG, Castro J, Sánchez L, Presa P, Pérez M, Sanjuán A, de Carlos A, Alvarez-Dios JA, Ezcurra S, Cal RM, Piferrer F, Martínez P: A microsatellite genetic map of the turbot (Scophthalmus maximus). Genetics 2007, 177:2457-2467. 77. Sekino M, Hara M: Linkage maps for the Pacific Abalone (Genus haliotis) based on microsatellite DNA markers. Genetics 2007, 175:945-958. 78. Archibald AL, Haley CS, Brown JF, Couperwhite S, McQueen HA, Nicholson D, Coppieters W, Weghe A Van de, Stratil A, Winterø AK, et al.: The PiGMap consortium linkage map of the pig (Sus scrofa). Mammalian Genome 1995, 6:157-175. 79. Kappes SM, Keele JW, Stone RT, McGraw RA, Sonstegard TS, Smith TP, Lopez-Corrales NL, Beattie CW: A second-generation link- age map of the bovine genome. Genome Research 1997, 7:235-249. Page 16 of 17 (page number not for citation purposes)