name BAT1 ATP6V1G2 NFKBIL1 TNF LST1 NCR3 AIF1 BAT2 BAT3 APOM C6orf47 BAT4 CSNK2B LY6G5B LY6G5C BAT5 LY6G6D LY6G6E LY6G6C C6orf25 DDAH2 CLIC1 MSH5 C6orf26 C6orf27 VARS2 LSM2 HSPA1A C6orf48 NEU1 C6orf29 BAT8 ZBTB12 BF/C2 RDBP SKIV2L DOM3Z STK19 C4B CYP21A2 TNXB CREBL1 FKBPL C6orf31 PPT2 EGFL8 AGPAT1 RNF5 AGER PBX2 GPSM3 NOTCH4 accession NM_004640 NM_130463 NM_005007 NM_000594 NM_007161 NM_147130 NM_001623 NM_004638 NM_004639 NM_019101 NM_021184 NM_033177 NM_001320 NM_021221 NM_025262 NM_021160 NM_021246 NM_024123 NM_025261 NM_025260 NM_013974 NM_001288 NM_002441 NM_025259 NM_025258 NM_006295 NM_021177 NM_005345 NM_016947 NM_000434 NM_032794 NM_025256 NM_181842 NM_001710 NM_002904 NM_006929 NM_032419 NM_004197 NM_000592 NM_000500 NM_032470 NM_004381 NM_022110 NM_030651 NM_005155 NM_030652 NM_032741 NM_006913 NM_001136 NM_002586 NM_022107 NM_004557 BMC Genomics 2005, 6:152 http://www.biomedcentral.com/1471-2164/6/152 Table 3: List of human MHC class III region genes used against the zebrafish whole-genome assembly. Genes with the suffix "like" are either gene fragments and/or highly similar to their human counterparts. Genes not identified by sequence similarity searches are marked as not found (NF). The official gene nomenclature for zebrafish is shown in brackets. MHC CLASS III REGION GENES HUMAN ZEBRAFISH 3 [hsp70] (X3) 8 [hsp70] location 19 [zgc:63773] NF NF 19 [tnf] NF NF NF 19 [bat2-like] 1 [bat3] NF NF s_339 [bat4-like] 19 [ck2b] (X2) NF NF NA9087 [bat5-like] NF NF NF NF NF 18 [zgc:77538] 15 [msh5] NF 1 [c6orf27-like] 11 [vars2] 6 [smx5] NA17761 [hsp70] NF NA17767 [neu1] NA17767 [zgc:64108] NA17767 [bat8] NA17767 [zbtb12] 21 [bf] NA17761 [rdbp] 19 [skiv2l] NA17766 [dom3z] 18 [stk19-like] 15 [c4] NA14479 [c3] 6 [cyp21a2] 16 [tnx-like] NF NF 19 [c6orf31-like] 19 [ppt2] NF NF NF NF NA14559 [pbx1a] NF s_285 [notch3] location 16 [ddx39] 5 [atp6v1g1] NA11949 [tnfa-like] 5 [zgc:73179] 19 [bat3-like] 23 [ck2b] 19 [ddah1] 14 [zgc:92762] NA17761 [bf] NA17761 [skiv2l] 15 [a2m] 2 [tnw] 20 [atf6-like] s_1796 [ppt2] 1 [agpat3] 11 [pbx1a] 5 [notch1] location location 16 [clica] 17 [clic4] 22 [c3] 2 [tnr] NA5816 [zgc:55621] 13 [agpat4] 18 [pbx3b] NA17328 [a2m] 5 [tnc] NA11844 [pbxy] NA15389 [notch2] s_1523 [notch3] Page 5 of 10 (page number not for citation purposes)