M23383 -4.0 AA166512 -7.1 W50167 -10.4 Accession fold-change X16496 6.2 X51715 3.7 Q61575 3.2 D13801 3.0 Y07691 1.8 U53925 -1.5 U51335 -1.6 Q05481 -1.9 Y12656 -2.2 X61800 -2.5 X66224 -2.9 X58250 -3.8 Accession fold-change W98426 5.6 W85565 3.6 M12130 3.0 W54015 3.0 AA114781 1.8 X15769 -1.6 W34985 -3.3 Accession fold-change AA105072 2.5 AA125293 W13807 AA051240 W50538 K02060 W70475 AA087408 P05086 -2.6 AA020069 -3.8 AA051240 -4.5 AA088054 -5.4 Accession fold-change AA038094 2.9 W85659 1.6 X84940 W88176 X98055 -3.2 X81627 -23.7 Accession fold-change AA168931 3.8 P24049 2.4 P70265 2.3 BC000408 -1.8 X51905 -1.9 AA034842 -2.9 AA145750 -2.9 BMC Genomics 2004, 5:46 http://www.biomedcentral.com/1471-2164/5/46 Table 1: Differential Gene Expression in LAPE Cells Relative to LAPN Cells (Continued) Table 1: Differential Gene Expression in LAPE Cells Relative to LAPN Cells (Continued) glucose transporter type 4 insulin- responsive (GT2) synaptic vesicle amine transporter V-ATPase E Transcriptional Regulation histone H3.1 retinoic acid-binding protein HNF-3/Forkhead homolog II transcription regulatory protein MCP-1 (POU 1) NfiA2-protein (nuclear factor 1) transcription factor C1 GATA-6 zinc finger protein 91 winged-helix gene, htlf C/EBP delta retinoid X receptor-beta HLX homeo box protein Nucleotide Processing myoblast cell surface antigen activator 1 37 KD subunit RNA polymerase II large subunit DNA-directed RNA polymerase III largest subunit uridylate kinase U1RNA-associated 70-kDa protein U6 snRNA-associated protein Protein Processing eukaryotic peptide chain releasing factor GTP-binding subunit putative ATP-dependent RNA helicase PL10 40S ribosomal protein S10 tryptophanyl-tRNA synthetase ubiquitin carboxyl-terminal hydrolase (protease 4) ribosomal protein L32 elongation factor TS (forms complex with EF-tu) ubiquitin carboxyl-terminal hydrolase (protease 8) elongation factor 2 (EF-2) phenylalanine – tRNA synthetase threonyl-tRNA synthetase elongation factor TU Stress-related glutathione peroxidase thioredoxin-dependent peroxide reductase 2 superoxide dismutase 3 (SOD3) thioredoxin-dependent peroxide reductase 1 glutathione S-transferase, GSTT1 24p3 lipocalin Carbohydrate Metabolism pyruvate kinase M2 hexokinase phosphofructose kinase-2 acetyl-Coenzyme A acetyltransferase 2 Ldh-2 ERV1 galactokinase 2 2.4 2.1 1.8 1.6 -1.8 -1.9 -2.4 -1.5 -2.1 citrate transport protein phosphorylase B kinase gamma catalytic subunit fructose-1,6-bisphosphatase lactate dehydrogenase Electron Transport and Oxidative Phosphorylation ATP synthase (subunit D) NADH-ubiquinone oxidoreductase (complex I) cytochrome C oxidase VIa ATP synthase P1precursor (subunit C) ATP synthase (subunit A) mitochondrial inner membrane protease subunit 1 cytochrome P450IIIA Trafficking beta adaptin rab10 rab8 rab11b BRAIN PROTEIN I47(similar to yeast SEC 17) PROTEIN TRANSPORT PROTEIN SEC22 SYNAPTOBREVIN 2 Immune-related Signaling anti-DNA immunoglobulin heavy chain IgG immunoglobulin rearranged kappa chain complement receptor type 2 precursor (CR2) thymocyte B cell antigen precursor immunoglobulin alpha heavy chain interferon gamma receptor second chain pre-B cell enhancing factor precursor interferon beta type 2 anti-DNA immunoglobulin light chain IgG FK506-binding protein precursor (FKBP-13) immunoglobulin light chain Fv-fragment Ig 1B4.B5 heavy chain mRNA for mouse cytochrome c immunoglobulin-like receptor PIRA1 CD10 neutral endopeptidase (pre-B cell differentiation) immunoglobulin variable region, heavy chain immune-responsive gene 1 (Irg1) anti-DNA immunoglobulin heavy chain IgG immunoglobulin light chain variable region immunoglobulin heavy chain variable region AA108822 AA015461 P31399 BC002772 U08439 W16250 W49135 AA009014 P19112 -4.0 P00338 -4.0 Accession fold-change D26137 -3.9 Accession fold-change P21851 1.9 AA119194 1.5 P22128 3.3 L26528 -1.5 W55684 -1.7 AA023107 -1.8 AA072236 -4.6 Accession fold-change U55461 3.5 ET62056 W98124 AA068606 J00475 U69599 W59723 V00756 U55604 AA163272 Y10941 ET61726 U96682 M81591 X95878 L38281 U55550 ET61272 ET62261 -2.9 -3.7 6.4 2.3 2.2 2.0 1.8 -1.5 3.4 2.6 2.3 2.2 1.8 1.8 1.7 1.6 -1.5 -2.3 -2.3 -2.8 -3.1 -3.3 -3.9 -4.1 -7.8 -8.2 Page 5 of 13 (page number not for citation purposes)