BMC Genomics 2005, 6:103 http://www.biomedcentral.com/1471-2164/6/103 Table 1: CDSs of pAW63: homologies and comparison with pXO2 and pBT9727 pAW63 s CDS* coordinates size (aa) most relevant homology start stop function / microorganism / (amino acid identity percentage 'id %') pXO2 pBT9727 CDS* id % CDS* id % #001 #002 #003 #004 #005 #006 #007 #008 #009 #010 #011 #012 #013 #014 #015 #016 #017 #018 #019 #020 #021 #022 #023 #024 #025 #026 #027 #028 #029 #030 #031 #032 #033 #034 #035 #036 #037 #038 #039 #040 #041 #042 #043 #044 #045 #046 #047 #048 #049 #050 #051 #052 #053 #054 #055 #056 #057 #058 - 1151 - 1450 - 2585 - 2857 - 3554 - 4333 - 6254 - 7314 - 9250 - 9935 - 10315 - 11142 - 14900 - 16905 - 18508 - 20463 - 20847 - 21116 - 21662 - 22452 - 23282 - 24648 - 25024 - 25273 - 25735 - 30002 - 30709 - 31117 - 31693 - 32268 - 32492 - 33216 - 33820 - 33693 - 34082 - 34439 - 34874 - 35824 - 36199 - 36488 - 37060 - 37861 - 38649 - 39688 - 40902 - 41848 - 43592 + 44458 + 45347 - 46557 - 48301 - 49424 + 49620 + 50020 - 51260 - 51589 + 52288 - 54506 542 1162 1727 2581 2945 3577 4448 6927 7315 9266 10000 10377 11528 14925 17839 18534 20547 20864 21299 21702 22448 23316 24664 25123 25360 25754 30556 30724 31204 31794 32300 32880 33694 33234 33827 34100 34622 34972 35968 36371 36571 37336 38346 39532 39684 41089 42050 45385 45671 45735 46663 48788 49968 50407 50471 51343 53362 53636 203 96 286 92 203 252 602 129 645 223 105 255 1124 660 223 643 100 84 121 250 278 444 120 50 125 1416 51 131 163 158 64 112 42 153 85 113 84 284 77 39 163 175 101 52 406 253 514 309 108 274 546 212 116 129 263 82 358 290 - hypothetical protein Efae03001129 Enterococcus faecium (29%) chromosome segregation ATPase E. faecium (25%) - - Tn916 ORF 14, similar to NLP/p60 family lipoprotein E. faecalis (37%) Type II intron reverse transcriptase IepA Bacillus megaterium (44%) Tn916 ORF 14, similar to NLP/p60 family lipoprotein E. faecalis (37%) VirB4, Type IV secretory pathway E. faecium (37%) ATPase involved in DNA repair E. faecium (30%) - - adhesin AidA, Type V secretory pathway E. faecium (25%) VirD4, Type IV secretory pathway E. faecium (42%) VirD4, Type IV secretory pathway E. faecium (38%) putative membrane protein (no bacterial homologs) - - hypothetical protein Listeria monocytogenes (37%) conserved hypothetical proteinL. monocytogenes (34%) conserved hypothetical proteinL. monocytogenes (32%) VirB11, Type II/IV secretion system L. monocytogenes (35%) conserved hypothetical protein L. monocytogenes (37%) - - cell surface protein, similar to Rhs family Bacillus cereus (20%) - - - - - - - - - - - - - - - - - - prophage helix-turn-helix protein Bacillus cereus G9241 (25%) - replication protein RepE E. faecalis (40%) replication-associated protein RepB E. faecalis putative replication-associated (no homologies) (31%) - pheromone binding protein B. cereus G9241 (73%) DNA-binding protein B. cereus G9241 (53%) conserved hypothetical protein Staphylococcus aureus (31%) group specific protein B. cereus ZK (75%) hypothetical protein lpl1076 Legionella pneumophila (49%) hypothetical protein B. cereus ATCC 14579 (60%) RapD response regulator B. thuringiensis (94%) transposase, IS5 family Aneurinibacillus thermoaerophilus (52%) #001 77% #002 55% #004 80% #005 92% #006 93% #007 88% - - #007 77% #008 95% #009 91% #010 95% - - #013 74% #014 79% #015 94% #016 65% #017 72% #018 89% #020 83% #021 99% #022 69% #023 87% #024 94% #025 57% #026 77% #027 78% - - - - - - - - - - - - - - - - - - - - - - - - - - - - #031 88% #032 84% #033 90% #034 66% #036 89% #038 88% #039 96% - - - - - - #089 90% #093 61% #095 75% #096 77% - - - 86% - - - - #001 67% #002 52% #003 67% #004 62% #006 60% #007 78% - - #007 61% #008 80% #009 75% #010 79% - - #013 48% #014 85% #014 83% #015 50% #016 43% #017 63% #018 58% #019 70% #020 61% #021 70% #022 70% - - #023 68% #024 84% - - - - - - - - - - - - - - #026 58% - - - - #028 66% - - #033 50% - - #034 39% #036 50% #037 60% - - #038 59% #045 70% #046 83% - - - - - - #055 80% #059 77% #062 71% #063 76% - - - - - - - - Page 4 of 14 (page number not for citation purposes)