Yin et al. BMC Genomics 2010, 11:612 http://www.biomedcentral.com/1471-2164/11/612 Page 6 of 18 Table 2 Up-regulation of genes in iBMDCs treated with [BF/S+L/Ep] for (A) 4 h or (B) 12 h compared to DMSO alone Gene Name Accession Number Expression Ratioa (+)/(-) At 4 h: Cluster 1 Ncam2 Serpinb2 Ikbkg Cluster 2 Amot Cxcl5 Irg1 Cxcl7 Cluster 3 Nrxn1 Sorbs1 Ahrr Abce1 Cluster 4 Cyr61 Mtap9 Cluster 5 Ppfia1 Cluster 6 Wdhd1 Cluster 7 Prdm10 Tdrd3 Mif4gd Dnahc2 At 12 h: Cluster 1 Serpinb2 Cspg2 Mmp8 Myo1d Cluster 2 Phip Cd38 Rbp1 Ap3s2 Golph4 Cluster 3 Dnm1l Wdfy3 Acpp Adhesion molecules, Cytoskeleton, Cell movement neural cell adhesion molecule 2 serine (or cysteine) peptidase inhibitor, clade B, member 2 inhibitor of kappa B kinase gamma Immune response angiomotin chemokine (C-X-C motif) ligand 5 immunoresponsive gene 1 chemokine (C-X-C motif) ligand 7 Signal transmission, Transporter neurexin I sorbin and SH3 domain containing 1 aryl-hydrocarbon receptor repressor ATP-binding cassette, sub-family E (OABP), member 1 Cell cycle, DNA repair, Apoptosis cysteine rich protein 61 microtubule-associated protein 9 Enzyme, Kinase protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF) DNA binding protein, Transcription factor WD-repeat HMG-box DNA binding protein 1 Miscellaneous PR domain containing 10 Tudor domain containing 3 MIF4G domain containing dynein, axonemal, heavy chain 2 Adhesion molecules, Cytoskeleton, Cell movement serine (or cysteine) peptidase inhibitor, clade B, member 2 chondroitin sulfate proteoglycan 2 matrix metallopeptidase 8 Myosin ID Signal transmission, Transporter pleckstrin homology domain interacting protein CD38 antigen retinol binding protein 1, cellular adaptor-related protein complex 3, sigma 2 subunit golgi phosphoprotein 4 Enzyme, Kinase dynamin 1-like WD repeat and FYVE domain containing 3 acid phosphatase, prostate NM_010954 NM_011111 NM_010547 NM_153319 NM_009141 XM_127883 NM_023785 Q9CS84 NM_009166 NM_009644 NM_015751 NM_010516 Q3TRR0 XM_133979 NM_172598 Q3UTQ7 NM_172605 NM_027162 O08826 NM_011111 NM_019389 NM_008611 NM_177390 Q32NY1 NM_007646 NM_011254 NM_009682 NM_175193 NM_152816 NM_172882 NM_019807 6.57 4.50 2.03 2.48 8.63 2.17 2.08 9.62 3.70 2.37 2.10 6.60 2.64 2.74 2.04 6.98 3.48 2.16 2.09 3.34 2.20 2.18 2.07 3.28 2.51 2.28 2.12 2.03 13.11 4.64 2.18