BMC Genomics 2007, 8:110 http://www.biomedcentral.com/1471-2164/8/110 Table 3: Isolates used in this study and distribution of subtracted sequences. (Continued) + - - - - - - - + + + + + + + + + + + + + + + - + - - - - - - - - + + + + + - + + + - - - - - - 629-C10 (Cju05) 0 0 12 (67%) 8 (80%) 0 0 6 (17%) 5 (19%) 3 (38%) 3 (50%) 3 (100%) 0 0 20 (25%) 0 11390 2299 11207 11279 11305 11311 11201 11237 11359 11421 11429 11781 11997 11400 1967 1262 1765 490 11204 11265 11303 11407 11579 C. coli 1387 45 257 257 257 257 257 257 257 42 42 42 42 42 42 42 42 42 42 48 48 48 48 48 ST Complex ST-21 ST-61 ST-45 ST-42 ST-48 ST-257 Source of isolate human cattle rabbit bird badger sheep water total C. jejuni C. coli 45 257 257 257 257 257 257 257 42 42 42 42 42 42 42 42 42 42 48 48 48 48 48 29 12 18 10 5 7 36 24 8 6 3 3 1 81 1 The number and percentage of isolates carrying each of the subtracted sequences is shown amongst isolates grouped either by MLST clonal complex or source. human cattle human human human human human human human human human human human human cattle cattle cattle cattle human human human human human water + + + + + + + + + + + + + + + + + + - - - - - - - - - - - - - - + - - - - - + - - - - - - - - - 1967-H9 (Cju35) 0 0 18 (100%) 10 (100%) 0 7 (100%) 16 (44%) 9 (38%) 3 (38%) 4 (67%) 3 (100%) 0 0 35 (43%) 0 21 (72%) 26 (90%) 12 (100%) 12 (100%) 0 14 (78%) 2 (20%) 10 (100%) 0 5 (100%) 0 0 13 (36%) 13 (54%) 4 (50%) 1 (17%) 0 3 (100%) 1 (100%) 29 (81%) 22 (92%) 7 (88%) 3 (50%) 2 (67%) 3 (100%) 1 (100%) 35 (43%) 67 (83%) 0 0 + - - - - - - - - - - - - - - - - - - - - - - - + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0 0 0 0 18 (100%) 17 (94%) 0 0 0 0 0 0 4 (11%) 4 (17%) 3 (38%) 4 (67%) 3 (100%) 0 0 4 (11%) 4 (17%) 3 (38%) 4 (67%) 2 (67%) 0 0 0 0 1 (5%) 10 (100%) 0 0 6 (17%) 5 (19%) 0 0 0 0 0 3 (10%) 3 (10%) 12 (100%) 4 (31%) 0 0 0 0 0 0 0 0 6 (17%) 8 (33%) 1 (13%) 0 0 0 0 3 (8%) 3 (12%) 0 1 (17%) 0 0 0 18 (22%) 17 (21%) 11 (13%) 15 (19%) 7 (8%) 0 0 0 0 0 Page 6 of 11 (page number not for citation purposes) The presence (+) or absence (-) of a subtracted sequence is indicated. ST; MLST sequence type. CC; clonal complex Table 4: Summary of SSH sequence distributions amongst a panel of C. jejuni isolates Total 1967-C2 Cj0264c 629-D8 629-D9 1967-A5 961-A9 670-D7