BMC Genomics 2004, 5:54 http://www.biomedcentral.com/1471-2164/5/54 Table 6: Ambystoma contigs that show sequence similarity to rat spinal cord injury genes. Ambystoma Contig ID MexCluster_7440_Contig1 MexCluster_4624_Contig1 TigCluster_4083_Contig1 TigSingletonClusters_Salamander_4_G20_ab1 MexSingletonClusters_NT009B_B04 TigCluster_3719_Contig1 TigCluster_8423_Contig1 TigCluster_7064_Contig1 MexCluster_3225_Contig1 TigSingletonClusters_Salamander_13_F03_ab1 MexSingletonClusters_BL285B_A06 TigCluster_6994_Contig1 MexSingletonClusters_BL014B_F12 TigSingletonClusters_Salamander_5_F07_ab1 MexCluster_1251_Contig1 TigSingletonClusters_Salamander_3_P14_ab1 TigSingletonClusters_Salamander_22_B01_ab1 TigSingletonClusters_Salamander_17_N04_ab1 MexSingletonClusters_v1_p8_c16_triplex5ld_ TigCluster_6321_Contig1 MexCluster_5399_Contig1 TigCluster_2577_Contig1 MexCluster_4647_Contig1 TigSingletonClusters_Salamander_12_M05_ab1 MexSingletonClusters_BL285C_F02 TigSingletonClusters_Salamander_2_B24_ab1 TigCluster_5740_V2_p10_M20_TriplEx5ld_ TigSingletonClusters_V2_p5_A2_TriplEx5ld_ MexCluster_1645_Contig1 TigSingletonClusters_Contig328 TigSingletonClusters_Contig45 MexSingletonClusters_NT016A_A09 TigSingletonClusters_I09_Ag2_p9_K24_M13R MexSingletonClusters_NT007A_E07 TigCluster_7148_Contig1 MexCluster_9504_Contig1 MexSingletonClusters_BL016B_B02 TigCluster_981_Contig1 MexSingletonClusters_nm_19_k3_t3_ MexSingletonClusters_v11_p42_j20_t3_049_ab1 gi|207138| norvegicus syntaxin B MexSingletonClusters_nm_14_h19_t3_ TigSingletonClusters_Contig336 TigSingletonClusters_E10_Ag2_p18_O19_M13 MexCluster_211_Contig1 TigSingletonClusters_Salamander_7_K14_ab1 MexSingletonClusters_NT014A_G03 TigSingletonClusters_Salamander_9_M15_ab1 TigSingletonClusters_Salamander_19_M06_ab1 MexSingletonClusters_Contig100 TigSingletonClusters_Salamander_11_A16_ab1 MexCluster_8345_Contig1 TigCluster_8032_Contig1 MexCluster_3580_Contig1 TigCluster_8592_Contig2 TigSingletonClusters_Salamander_17_N08_ab1 MexSingletonClusters_BL286C_D09 TigSingletonClusters_Contig95 MexSingletonClusters_Contig461 TigSingletonClusters_Salamander_11_O19_ab1 RAT cDNA clone gi|1150557|c-myc, exon 2 gi|1468968| brain acyl-CoA synthtase II gi|1552375| SKR6 gene, a CB1 cannabinoid recept. gi|17352488| cyclin ania-6a gi|1778068| binding zyginI gi|1836160| Ca2+/calmodulin-dependent gi|1906612| Rattus norvegicus CXC chemokine gi|203042| (Na+, K+)-ATPase-beta-2 subunit gi|203048| plasma membrane Ca2+ ATPase-isoform 2 gi|203167| GTP-binding protein (G-alpha-i1) gi|203336| catechol-O-methyltransferase gi|203467| voltage-gated K+ channel protein (RK5) gi|203583| cytosolic retinol-binding protein (CRBP) gi|204647| heme oxygenase gene gi|204664| heat shock protein 27 (Hsp27) gi|205404| metabotropic glutamate receptor 3 gi|205508| myelin/oligodendrocyte glycoprotein gi|205531| metallothionein-2 and metallothionein 1 gi|205537| microtubule-associated protein 1A gi|205633| Na, K-ATPase alpha-2 subunit gi|205683| smallest neurofilament protein (NF-L) gi|205693| nerve growth factor-induced (NGFI-A) gi|205754| neuronal protein (NP25) gi|206161| peripheral-type benzodiazepine receptor gi|206166| protein kinase C type III gi|206170| brain type II Ca2+/calmodulin-dependent gi|207473| neural receptor protein-tyrosine kinase gi|2116627| SNAP-25A gi|220713| calcineurin A alpha gi|220839| platelet-derived growth factor A chain gi|2501807| brain digoxin carrier protein gi|2746069| MAP-kinase phosphatase (cpg21) gi|2832312| survival motor neuron (smn) gi|294567| heat shock protein 70 (HSP70) gi|2961528| carboxyl-terminal PDZ gi|298325| sodium-dependent neurotransmitter tran. gi|2996031| brain finger protein (BFP) E-value E-29 E-09 E-09 E-08 E-46 E-114 E-102 E-20 E-68 E-38 E-63 E-65 E-112 E-92 E-110 E-152 E-47 E-08 E-77 E-18 E-67 E-67 E-83 E-51 E-41 E-26 E-08 E-59 E-149 0 E-63 E-95 E-24 E-64 E-57 E-73 E-36 E-27 E-117 1e-079 E-40 E-34 E-123 E-63 E-87 E-21 E-56 E-55 E-108 E-70 E-40 E-49 0 E-161 E-10 E-12 E-22 E-08 E-23 Page 7 of 17 (page number not for citation purposes)