Ponsuksili et al. BMC Genomics 2010, 11:572 http://www.biomedcentral.com/1471-2164/11/572 Page 5 of 14 Table 4 Probe-sets with expression levels that are correlated with principal component 3 and information about their eQTL Annotation eQTL individual trait correlation* Prob_set_IDs Gene Symbols SSC cM F traits Ssc.16910.1.S1 ROD1 1 13 5.92 CL, LF24ld Ssc.26338.1.S1 PRKAG1 1 30 6.69 -LF24ld Ssc.29222.1.S1 UBE2CBP 1 31 5.72 pH1ld, -LF1ld, -LF24ld Ssc.3853.1.S1 C9orf61 1 54 7.98 -DL, pH1ld, -LF24sm Ssc.20392.1.S1 BVES 1 63 22.1 -pH1ld Ssc.7558.1.A1 1 127 7.96 -SF, pH1ld, -LF24ld Ssc.25132.3.S1 RAD23B 1 130 5.11 DL, -pH1ld, LF1ld, LF24sm Ssc.16460.1.S1 EGR1 2 52 6.24 -LF24sm Ssc.29893.1.A1 RHOBTB3 2 94 7.37 LF24ld Ssc.14340.3.S1 LITAF 3 37 6.69 -pH1ld Ssc.7947.1.A1 PREPL 3 61 5.13 -pH1ld Ssc.2441.2.A1 SLC3A1 3 64 6.08 -pH1ld, LF24ld Ssc.24213.2.S1 UXS1 3 74 5.71 LF24ld, LF24sm Ssc.5415.1.S1 DDX1 3 86 4.96 pH1ld, -pH24ld, -LF24ld Ssc.8547.1.A1 3 86 7.11 pH1ld, LF24sm Ssc.19258.1.S1 KCNJ8 5 0 5.98 -LF1ld Ssc.5769.1.S1 Rassf3 5 3 7.01 pH1ld, -LF24ld Ssc.3935.1.S1 SLC48A1 5 89 5.17 LF24sm Ssc.10297.3.S1 CAPZB 6 95 6.17 DL, CL, TL, -pH24ld, LF24ld, LF24sm Ssc.10297.1.S1 CAPZB 6 99 6 CL, LF24sm Ssc.2152.2.S1 BSDC1 6 112 4.92 TL Ssc.25358.1.S1 GRAMD2 7 5 5.41 -CL, pH1ld, -LF24ld Ssc.21139.2.S1 CLIC5 7 14 6 pH1ld Ssc.17920.2.S1 C15orf17 7 44 7.21 LF24sm Ssc.30959.1.A1 LOC100153449 7 55 6.11 pH1ld Ssc.17920.1.A1 C15orf17 7 91 7.56 -LF24sm Ssc.8611.2.S1 MLL5 9 0 6.06 LF24ld, LF24sm Ssc.28945.3.S1 FAM133B 9 0 5.15 LF24sm Ssc.23527.1.A1 C11orf57 9 0 7.79 LF24sm Ssc.8415.1.A1 BACE1 9 2 5.28 LF24sm Ssc.16454.1.S1 DNAJC2 9 7 5.51 LF24sm Ssc.6155.1.S1 CTSC 9 13 8.95 pH24ld, pH24sm Ssc.28609.1.S1 SNHG1 9 45 5.21 -LF24sm Ssc.25107.1.S1 BAT2D1 9 51 6.56 LF24ld, LF24sm Ssc.1537.1.S2 YKT6 9 82 5.23 LF24sm Ssc.8563.2.S1 RBM27 11 67 5.11 LF24ld Ssc.30812.1.S1 SPAG7 12 0 5.02 pH1ld, LF24sm Ssc.6130.1.S1 FBXW11 13 46 8.08 pH24sm Ssc.4217.1.S1 ITIH4 13 47 7.31 -DL, pH1ld, -LF24sm Ssc.6767.1.S1 dJ196E23.2 13 53 5.05 LF24sm Ssc.7384.1.A1 ZFYVE20 13 53 7.69 LF24sm Ssc.30107.1.S1 C10orf59 14 50 6.38 -LF1ld Ssc.11118.1.S1 ATP5B 14 86 5.44 -LF24ld Ssc.24012.1.S1 TSN 15 10 5.26 -LF24ld Ssc.9483.1.A1 Osbpl6 15 28 7.28 -LF24sm Ssc.13904.1.S1 TM2D2 15 51 6.73 -pH1ld, LF24sm Ssc.13358.1.A1 Agbl3 18 4 5.67 DL,LF24sm “*”the probe-sets listed here represent a subset of probe-sets correlated with individual meat quality traits as indicated in this column naming the traits with which the corresponding probe-sets show correlated expression in addition to the correlated expression with PC3; “-” indicates negative correlation Trait abbreviations are given at table 2.