Martin et al. BMC Genomics 2010, 11:418 http://www.biomedcentral.com/1471-2164/11/418 Page 10 of 20 Table 4 Genes responding differently to infection between fed and starved fish TRAITS IDENTIFIER1 ACC2 AFL/ ASL/ Interaction5 PFL3 PSL4 FC A FC B FC C IDENTITY6 Increased more in AFL than ASL liv_dis_D3C06_abe_tra_sub_0p_11N eye_opk_20I02_osl_sgp_std_5p_11S AM049619 16.06 CO471610 7.56 mus_mfo_13B12_fou_sal_nrp_5p_12M bra_opk_07F18_osl_sgp_std_5p_11S DW591886 5.60 CK875291 5.41 spl_opk_16G20_osl_sgp_std_5p_11C liv_opk_12J23_osl_sgp_std_5p_11C liv_lrr_06F01_gal_sal_std_5p_11C spl_opk_16I18_osl_sgp_std_5p_11S liv_stb_J4D07_sti_tra_sub_0p_11C liv_lrr_04C03_gal_sal_std_5p_11C liv_opk_12E12_osl_sgp_std_5p_11S Increased more in ASL than AFL kid_aki_07D09_abe_tra_sub_0p_11S kid_aki_05H02_abe_tra_sub_0p_11C liv_ali_02G12_abe_tra_sub_0p_11C kid_aki_04G07_abe_tra_sub_0p_11C liv_opk_12G04_osl_sgp_std_5p_11C liv_dis_D4D03_abe_tra_sub_0p_11N liv_opk_12D07_osl_sgp_std_5p_11C liv_dis_D4A07_abe_tra_sub_0p_11N liv_ali_04B05_abe_tra_sub_0p_11C ova_oyr_05A10_gal_sal_std_5p_11C Decreased more in ASL than AFL liv_opk_12M05_osl_sgp_std_5p_11C liv_opk_12L05_osl_sgp_std_5p_11C liv_opk_12I06_osl_sgp_std_5p_11S tes_opk_15A07_osl_sgp_std_5p_11S bra_snb_06F02_osl_tra_nrc_5p_11C EG647964 1.12 ova_oyr_04D02_gal_sal_std_5p_11S BM414075 -4.93 -23.18 Decreased more in AFL than ASL liv_lrr_01C06_gal_sal_std_5p_11C tes_tsr_02G05_gal_sal_std_5p_11C mus_amu_05D01_abe_tra_sub_0p_11C AM412040 -2.31 gil_oss_G6N16_osl_sal_std_5p_11C CK877483 -2.31 spl_sts_20D01_sti_sal_std_5p_11C AJ425823 -2.54 AM042502 52.18 124.66 -2.39 CK893548 CK888142 5.08 4.94 No Acc 4.62 CK893722 3.54 AM397498 2.65 BI468056 2.46 CK888813 2.02 AM042371 46.53 AM402598 15.77 AM042284 13.21 CK889070 9.80 AM049704 4.72 CK888622 3.69 AM049678 3.09 AM402715 1.22 BM414000 1.19 CK888589 -2.46 CK888371 -2.47 CK889439 -2.68 CK897836 -2.79 No Acc -2.09 BM414288 -2.10 6.01 2.97 2.36 1.22 2.31 1.95 1.84 1.77 1.09 -1.03 -1.13 177.59 31.84 36.72 32.12 14.51 7.44 7.36 3.08 3.24 3.21 -6.49 -5.16 -7.71 -7.95 1.40 1.44 -1.05 1.40 1.09 2.67 2.54 2.37 4.43 2.20 2.54 2.51 2.01 2.43 2.54 2.29 -3.82 -2.02 -2.78 -3.28 -3.07 -2.02 -2.38 -2.51 -2.73 -2.87 2.64 2.09 2.88 2.85 4.71 -2.93 -3.03 -2.19 -3.23 -2.77 (Q40313) Caffeoyl-CoA O-methyltransferase (EC 2.1.1.104) (P27797) Calreticulin precursor (CRP55) (Calregulin) (HACBP) (ERp60) (P36871) Phosphoglucomutase-1 (EC 5.4.2.2) (O35760) Isopentenyl-diphosphate delta-isomerase 1 (EC 5.3.3.2) (P11941) Lysozyme C II precursor (EC 3.2.1.17) AF232215 Salvelinus fontinalis steroidogenic acute regulatory protein (StAR) (O88803) Leukocyte cell-derived chemotaxin 2 precursor OMLYRNA O.mykiss mRNA for lysozyme II (P08603) Complement factor H precursor (H factor 1) (P04186) Complement factor B precursor (EC 3.4.21.47) (P98093) Complement C3-1 ONHMHB2M Oncorhynchus mykiss beta-2 microglobulin mRNA (Q801Y3) Hepcidin 1 precursor (P10643) Complement component C7 precursor (P81491) Serum amyloid A-5 protein (Q9JLF7) Toll-like receptor 5 precursor toll-like leucine-rich repeat protein precursor (O15431) High-affinity copper uptake protein 1 (hCTR1) (Copper transporter 1) C type lectin receptor A (P80429) Serotransferrin II precursor (P62916) Transcription initiation factor IIB (General transcription factor TFIIB) (Q4AEH7) Glutathione peroxidase 2 (EC 1.11.1.9) (P31029) Serine–pyruvate aminotransferase mitochondrial precursor (EC 2.6.1.51) (P30613) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (P04694) Tyrosine aminotransferase (EC 2.6.1.5) (Q93088) Betaine–homocysteine S-methyltransferase (EC 2.1.1.5) (Q8BTW8) CDK5 regulatory subunit associated protein 1 (P04186) Complement factor B precursor (EC 3.4.21.47) (O00750) Phosphatidylinositol-4-phosphate 3-kinase (EC 2.7.1.154) CHK1 checkpoint homolog (S. pombe) nuclear factor kappa-B 1 rRNA promoter binding protein