Antibody

Antibodies (also called immunoglobulins) are large Y-shaped proteins that can stick to the surface of bacteria and viruses. They are found in the blood or other body fluids of vertebrates. Antibodies are the key element in the adaptive immune system.

The antibody recognizes a unique part of the foreign target called an antigen. Each tip of the "Y" of an antibody contains a structure (like a lock) that fits one particular key-like structure on an antigen. This binds the two structures together.

Using this binding mechanism, an antibody can tag a microbe or an infected cell for attack by other parts of the immune system, or can neutralize its target directly. The production of antibodies is the main function of humoral immunity.

Each antibody is different. They are all designed to attack only one kind of antigen (in practice, this means virus or bacteria). For instance, an antibody designed to destroy smallpox is unable to hit the bubonic plague or the common cold.

Though the general structure of all antibodies is very similar, that small region at the tip of the protein is extremely variable. This allows millions of antibodies with different tip structures to exist. Each of these variants can bind to a different antigen. This enormous diversity of antibodies allows the immune system to recognize an equally wide variety of antigens.

Relationship Between White Blood Cells and Antibodies 
There are two types of white blood cells: Phagocytes and Lymphocytes.

Phagocytes are a type of white blood cell. Once the antibodies attach to the pathogen the phagocytes bind to and engulf the pathogens. Once the pathogen is surrounded, the phagocyte then breaks down the cell using enzymes in its body. Phagocytes rely on antibodies to flag down pathogens in the blood system. 

The other type of white blood cell is called a Lymphocyte. These white blood cells are the ones that are in charge of producing antibodies. The Lymphocytes can detect what pathogen is in your body at that given moment and the Lymphocyte will produce a specific type of antibody to specifically attack that pathogen. These antibodies help group pathogens together into one mass so that the phagocytes can just engulf them whole, rather than going around and individually finding pathogens. They produce antibodies that are specific to the pathogen. It takes a while for lymphocytes to produce these specific antibodies. In addition, some lymphocytes produce toxins that counteract the effect of pathogenic exotoxins in the body.

Immunoglobulin diversity

Basic issue 
Although a huge variety of different antibodies is made in a single individual, the number of genes available to make these proteins is limited by the size of the genome.

There are a vast number of microbe strains, and so vertebrates need millions of different antibodies.  Actually, humans generate about 10 billion different antibodies, each capable of binding a distinct antigen site. This must be done with a very much smaller number of genes: the total human genome has only about 20,000 genes.

Several complex genetic mechanisms have evolved. These allow vertebrate B cells to generate a huge pool of antibodies from a relatively small number of antibody genes. The full details are not presented here, just a summary.

The variety of antibodies is got by combining segments from a pool of genes in many different ways. Then, hyper-mutations occur in the binding site area of the antibody gene. This creates further diversity.

Heavy chains 
Antibodies are glycoproteins belonging to the immunoglobulin superfamily; the terms antibody and immunoglobulin are often used interchangeably. Antibodies are typically made of basic structural units—each with two large heavy chains and two small light chains. There are several different types of antibody heavy chains, and several different kinds of antibodies, which are grouped into different isotypes based on which heavy chain they possess. Five different antibody isotypes are known in mammals. They  help direct the appropriate immune response for each different type of foreign object they encounter.

Variable tips 
Though the general structure of all antibodies is very similar,  a small region at the tip of the protein is extremely variable, allowing millions of antibodies with slightly different tip structures, or antigen binding sites, to exist. This region is known as the hypervariable region. Each of these variants can bind to a different antigen. This enormous diversity of antibodies allows the immune system to recognize an equally wide variety of antigens. The large and diverse population of antibodies is generated by random combinations of a set of gene segments that encode different antigen binding sites (or paratopes), followed by random mutations in this area of the antibody gene, which create further diversity. Antibody genes also re-organize in a process called class switching, which allows a single antibody to be used by several different parts of the immune system.

Examples of Antibodies

Antistreptolysin O: The Streptolysin Antibody 
The specific antibody that is produced to fight Group A streptococcus is called Antistreptolysin-O, also known as ASO.

Detection of ASO via antistreptolysin-O titer or anti-deoxyribonuclease B (anti-DNase B) is a common way of testing for a group A streptococcal infection. These tests indicate if streptolysin antibodies are present. These proteins are only synthesized by lymphocytes in the event that streptolysin enters the immune system, thus this is a useful way of determining if a patient has the infection.

Medical Applications of Antibodies 
Understanding the function and mechanism of antibodies is a powerful tool for disease treatment. Though most antibodies used in current clinical research are developed from mouse monoclonal antibodies, this method is allowing the scientific community to make great progress. Such developments include creating antibodies with highly conserved targets and the synthesis of new structures based on the antibodies themselves. There have also been advancements in increasing the binding affinity of antibodies to their associated antigens, a crucial quality to the effectiveness of the antibodies themselves.

Antibodies are constantly being developed in order to protect the immune system from harmful pathogens. For example, a team of researchers is working on creating a monoclonal antibody that combats Human T-cell leukemia virus type-1 (HTLV-1). The antibody specifically targets the HTLV-1 envelope protein gp46 glycoprotein as a means of destroying HTLV-1-infected cells. The results of the study demonstrate that antibodies can be developed as a therapeutic tool against pathogen-infected cells, thereby serving as a means of treating diseases caused by said pathogens.

Other websites 
Animated depictions of how antibodies are used in ELISA and ELISPOT assays

References 

Cell biology
Immunology