Amendment to Employment Agreement - Sean A. Cassidy



 Exhibit 10.42 
 

 
 February 23, 2009 
 Mr. Sean Cassidy 
 Vice President & Chief 
 Financial Officer 
 CuraGen Corporation 
 322 East Main
Street 
 Branford, CT 06405 
  

	Re:	Amendment to Employment Agreement 

 Dear Mr. Cassidy: 
 You and CuraGen Corporation (“CuraGen”) are parties to an Employment Agreement, entered into as of December 14, 2007 and effective as of January 1,
2008 (the “Employment Agreement”), which outlines the terms and conditions of your employment with CuraGen. In light of recent tax legislation under Section 409A of the Internal Revenue Code (“Section 409A”), you and CuraGen
mutually desire to amend certain provisions of the Employment Agreement as set forth below: 
 1. Section 11(E)  
 Section 11(E) of the Employment Agreement shall be deleted in its entirety and replaced with the following: 
 All payments and benefits set forth in Sections 11(B)-(D) are contingent on Executive’s execution
(without revocation) of a separation agreement that is in a form acceptable to the Company and contains a full waiver and release of claims against the Company (the “Release”), within twenty-one (21) days of the date of the
Executive’s termination of employment (on which date the separation agreement will be provided to the Executive). The payments and benefits set forth in Sections 11(B)-(D) shall commence on the 30th day following the Executive’s termination of employment, subject to the receipt of the Release and the expiration of any applicable revocation period as of such date.

 2. Section 11(F)  
 Section 11(F) of the
Employment Agreement shall be deleted in its entirety and replaced with the following: 
 (i) Subject to this Section 11(F), severance payments and
benefits payable to Executive under the Employment Agreement shall begin only upon the date of Executive’s “separation from service” (determined as set forth below) which occurs on or after the termination of 







 Executive’s service with CuraGen. The following rules shall apply with respect to distribution of the severance
payments and benefits, if any, to be provided to Executive under the Employment Agreement, as applicable: 
 (1) It is intended that each
installment of the severance payments and benefits provided under the Employment Agreement shall be treated as a separate “payment” for purposes of Section 409A. Neither CuraGen nor Executive shall have the right to accelerate or
defer the delivery of any such severance payments except to the extent specifically permitted or required by Section 409A. 
 (2) If, as
of the date of Executive’s “separation from service” from CuraGen, Executive is not a “specified employee” (within the meaning of Section 409A), then each installment of the severance payments and benefits shall be made
on the dates and terms set forth in the Employment Agreement. 
 (3) If, as of the date of Executive’s “separation from
service” from CuraGen, Executive is a “specified employee” (within the meaning of Section 409A), then: 
 (a) Each
installment of the severance payments and benefits due under the Employment Agreement that, in accordance with the dates and terms set forth herein, will in all circumstances, regardless of when Executive’s separation from service occurs, be
paid within the short-term deferral period (as defined under Section 409A) shall be treated as a short-term deferral within the meaning of Treasury Regulation Section 1.409A-l(b)(4) to the maximum extent permissible under
Section 409A; and 
 (b) Each installment of the severance payments and benefits due under the Employment Agreement that is not described
in Section 11(F)(i)(3)(a) and that would, absent this subsection, be paid within the six-month period following Executive’s “separation from service” from CuraGen shall not be paid until the date that is six months and one day after
such separation from service (or, if earlier Executive’s death), with any such installments that are required to be delayed being accumulated during the six-month period and paid in a lump sum on the date that is six months and one day
following Executive’s separation from service and any subsequent installments, if any, being paid in accordance with the dates and terms set forth herein; provided, however, that the preceding provisions of this sentence shall not apply to any
installment of payments if and to the maximum extent that that such installment is deemed to be paid under a separation pay plan that does not provide for a deferral of compensation by reason of the application of Treasury Regulation
1.409A-1(b)(9)(iii) (relating to separation pay upon an involuntary separation from service). Any installments that qualify for the exception under Treasury Regulation Section l.409A-1(b)(9)(iii) must be paid no later than the last day of
Executive’s second taxable year following the taxable year in which the separation from service occurs. 







 (ii) The determination of whether and when Executive’s separation from service from CuraGen has occurred shall be
made in a manner consistent with, and based on the presumptions set forth in, Treasury Regulation Section 1.409A-1(h). 
 (iii) All reimbursements and
in-kind benefits provided under the Employment Agreement shall be made or provided in accordance with the requirements of Section 409A to the extent that such reimbursements or in-kind benefits are subject to Section 409A. 
 3. Section 14(H)  
 The following sentence shall be added to the
end of Section 14(H) of the Employment Agreement: 
 To the extent that the total payments to the Executive are reduced pursuant to the preceding
sentence, such payments shall be reduced in the following order: accelerated vesting of stock options, then accelerated vesting of restricted stock, then cash severance, then benefits. 
 4. Schedule A  
 The Section 1) of Schedule A shall be deleted in its entirety and replaced with the following:

  

	 	1)	The Executive’s base salary shall be $200,000 per year, payable in bi-weekly installments, subject to increases by the Board of Directors, which shall review the salary
periodically. 

 Except as specifically provided herein, all other terms of the Employment Agreement shall remain in full force and effect. If
the terms of this amendment are acceptable to you, please sign and return the copy of this amendment enclosed for that purpose to Nathalie Richard, Director of Human Resources. 
  

			
	Sincerely,
	
	CuraGen Corporation
		
	By:	 	 /s/    Timothy M. Shannon

	Title:	 	Pres & CEO

 The foregoing correctly sets forth the terms of my continued employment with CuraGen Corporation. I am not relying
on any representations other than as set out in the Employment Agreement and the amendment thereto set forth above. I have been given a reasonable amount of time to consider this amendment and to consult an attorney and/or advisor of my choosing. I
have carefully read this amendment, understand the contents herein, freely and voluntarily assent to all of the terms and conditions hereof, and sign my name of my own free act. 
  

			
	Name:	 	 /s/    Sean A. Cassidy

		
	Date:	 	March 5, 2009