# Patent

## Title
Kits for measuring cellular transmembrane potential changes

## Abstract

The invention encompasses kits for an improved method for measuring membrane potential using compounds of the formula I as potentiometric probes. These probes may be used in combination with other fluorescent indicators such as Indo-1, Fura-2, and Fluo-3, such probes may be used in microplate reading devices such as FLIPRTM, fluorescent imaging plate reader, sold by Molecular Devices Corp., of Sunnyvale, Calif.; flow cytometers; and fluorometers. Such probes are used to measure membrane potential in live cells




    
    
        wherein X is O or S; and
        n is 1 or 2.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This is a divisional application of U.S. patent application Ser. No. 09/924,797, filed Aug. 8, 2001, now U.S. Pat. No. 6,852,504 to Klaubert et al., which is hereby incorporated by reference.


BACKGROUND OF THE INVENTION
1. Technical Field
The present invention relates generally to the fields of biology and chemistry, and bioanalytical instrumentation. In particular, the present invention is directed to composition and methods for use in sensing membrane potentials, especially in biological systems. Potentiometric optical probes enable researchers to perform membrane potential measurements in organelles and in cells that are too small to allow the use of microelectrodes. Moreover, in conjunction with imaging techniques, these probes can be employed to map variations in membrane potential across excitable cells and perfused organs with spatial resolution and sampling frequency that are difficult to achieve using microelectrodes.
2. Background of the Art
The plasma membrane of a cell typically has a transmembrane potential of approximately −70 mV (negative inside) as a consequence of K+, Na+ and Cl− concentration gradients that are maintained by active transport processes. Potentiometric probes offer an indirect method of detecting the translocation of these ions. Increases and decreases in membrane potential (referred to as membrane hyperpolarization and depolarization, respectively) play a central role in many physiological processes, including nerve-impulse propagation, muscle contraction, cell signaling and ion-channel gating (references 1–3). Potentiometric probes are important tools for studying these processes, and for cell-viability assessment. Potentiometric probes include the cationic or zwitterionic styryl dyes, the cationic carbocyanines and rhodamines, the anionic oxonols and hybrid oxonols and merocyanine 540 (references 4–8). The class of dye determines factors such as accumulation in cells, response mechanism and toxicity. Mechanisms for optical sensing of membrane potential have traditionally been divided into two classes: sensitive but slow redistribution of permanent ions from extracellular medium into the cell, and fast but small perturbation of relatively impermeable dyes attached to one face of the plasma membrane (references 2 and 3).
The bis-barbituric acid and thiobarbituric oxonols, often referred to as DiBAC and DiSBAC dyes respectively, form a family of spectrally distinct potentiometric probes with excitation maxima covering most of the range of visible wavelengths. DiBAC4(3) and DiSBAC2(3) have been the two most popular oxonol dyes for membrane potential measurement (references 9 and 11). These dyes enter depolarized cells where they bind to intracellular proteins or membranes and exhibit enhanced fluorescence and red spectral shifts. Increased depolarization results in more influx of the anionic dye and thus an increase in fluorescence. DiBAC4(3) reportedly has the highest voltage sensitivity. The long-wavelength DiSBAC2(3) has frequently been used in combination with the UV light-excitable Ca2+ indicators Indo-1 or Fura-2 for simultaneous measurements of membrane potential and Ca2+ concentrations. Interactions between anionic oxonols and the cationic K+-valinomycin complex complicate the use of this ionophore to calibrate potentiometric responses. DiBAC and DiSBAC dyes are excluded from mitochondria because of their overall negative charge, making them superior to carbocyanines for measuring plasma membrane potentials.
In general, DiBAC and DiSBAC dyes bearing longer alkyl chains had been proposed to have better properties for measuring membrane potentials (references 5 and 12). DiSBAC6(3) has been selected to use in a FRET-based membrane potential assay (reference 12). There are no reports on DiBAC1 and DiSBAC1 for measuring membrane potential.
It has been discovered that DiBAC1(3) and DiSBAC1(3) that possess unexpected properties that can be used to measure membrane potentials with FLIPR and other fluorescence devices. Compared with other members of the DiBAC and DiSBAC family, DiBAC1 (3) and DiSBAC1(3) give stronger signal and faster response, and exhibit greater water solubility.
SUMMARY
The invention encompasses an improved method for measuring membrane potential using compounds of formula I as potentiometric probes. These probes may be used in combination with other fluorescent indicators such as Indo-1, Fura-2, and Fluo-3, CALCIUM GREEN or Fluo-4. Such probes may be used in microplate reading devices such as the FLIPR fluorescent imaging plate reader, sold by Molecular Devices Corp. of Sunnyvale, Calif.; flow cytometers; and fluorometers. Such probes are used to measure membrane potential in live cells.




The invention also encompasses test kits containing reagents of formula I, and reagents of formula I in combination with a another fluorescent reagent, in particular where the fluorescent reagent is a fluorescent indicator such as lndo-1, Fura-2, Fluo-3, CALCIUM GREEN or FIuo-4; (b) a second non-fluorescent reagent that can undergo energy transfer with the first compound; (c) a second nonfluorescent reagent that can absorb the excitation light or emission from the first compound; and/or (d) a second fluorescent or luminescent reagent that can undergo energy transfer with the first compound.
Another aspect of the invention involves a method for generating voltage-sensitive fluorescent changes comprising incubating the membrane with:
(a) A first reagent selected from the potentiometric probes which redistribute from one side of the membrane to the opposite side in response to transmembrane potential; and a second reagent selected from the group consisting of non-fluorescent dyes or pigments that are not membrane-permeable, and undergo energy transfer with the first reagent on one side of the membrane to reduce or eliminate the fluorescence signal on that side; or
(b) A first reagent selected from the potentiometric probes which redistribute from one side of the membrane to the opposite side in response to transmembrane potential; and a second reagent selected from the group consisting of non-fluorescent dyes or pigments that are not membrane-permeable, and that absorb the excitation light or emission from the first reagent on one side of the membrane to reduce or eliminate the undesired fluorescence signal; or
(c) A first reagent selected from the potentiometric probes which redistribute from one side of the membrane to the opposite side in response to transmembrane potential; and a second reagent selected from the group consisting of fluorescent or luminescent probes which undergo energy transfer with the first reagent, said second reagent being located adjacent to either the one side or the other side of the membrane.



BRIEF DESCRIPTION OF THE FIGURES
FIG. 1 is a reaction scheme for making DiBAC and DiSBAC.
FIG. 2 illustrates the voltage-dependent fluorescence intensity changes of DiSBAC1(3) in P2X2 cells at different ATP concentrations.
FIG. 3 illustrates the absorption spectra of DiSBAC1(3), DiSBAC2(3), DiSBAC4(e), DiBAC1(3) and DiBAC4(3) in 1:1 methanol/water.
FIG. 4 illustrates the fluorescence spectra of DiSBAC1(3), DiSBAC2(3), DiSBAC3(3), DiBAC4(3) DiBAC1(3) and DiBAC4(3) in 1:1 methanol/water.



DETAILED DESCRIPTION
Compounds useful in practicing the present invention are made according to methods described by G. W. Fischer in Chem Ber, 1969, 102: 2609–2620, as shown in FIG. 1.
The invention is illustrated by the following examples:
EXAMPLE 1
Preparation of DiSBAC1(3)




DiBAC and DiSBAC dyes are prepared based on the procedure for ethyl and butyl derivatives (H. Bartsch and G. Haubold, Arch. Pharm. 1982, 315, 761–766). Specifically, malonaldehyde bis(phenylimine)monohydrochloride (2.6 g, 10 mmol) and 1,3-dimethyl-2-thiobarbituric acid (3.5 g, 20 mmol) are dissolved in acetonitrile (40 mL). To the solution is added triethylamine (2 g, 20 mmol). The reaction mixture is refluxed until the starting materials are completely consumed as indicated by TLC. The mixture is cooled to room temperature, and poured into acidic water (pH 2–3, 350 mL). The resulting suspension is filtered to collect the solid that is washed with cold water and air-dried. The crude product is further purified on a silica gel column using a gradient of dichloromethanol/methanol to give the desired product.
DiSBAC1(5), DiBAC1(3), DiBAC1(5) and other oxonol dyes are prepared analogous to the above procedure.
EXAMPLE 2
Measuring Membrane Potentials using DiSBAC1(3) in Combination with the Fluorescence Imaging Plate Reader (FLIPRTM)
This specific example illustrates how to use DiSBA1(3) in P2X2 cells in combination with the FLIPRTM fluorescent imaging plate reader sold by Molecular Devices Corp. of Sunnyvale, Calif. P2X2 cells are 1321 N1 astrocytoma cells transfected to overexpress the purinergic P2X2 ligand-gated ion channel. P2X2 belongs to a class of purinergic ion channels that pass calcium and sodium in response to purine, including adenosine 5′-triphosphate (ATP). P2X2 cells are propagated and maintained in DME (high glucose), 10% FCS, 1× Pen/Strep and 2 mM L-glutamine. Doubling time is approximately 36 hours. P2X2 cells should be split at a 1 to 2 ratio upon confluence. The cells should be carried for no more than 20 passages. When approaching this limit, a new frozen vial of cells should be resurrected. Following is a typical kit procedure:

    
    
        1. Plate 40,000 P2X2 cells in 100 μL per well for 96 well plates or 10,000 P2X2 cells in 25 μL per well for 384 well plates for overnight.
    
    


2. Prepare 1× Loading Buffer.

    
    
        2.1 To prepare the 1× Assay Buffer, pipette 10 mL of 10× Reagent Buffer (1× Hanks' Balance Saline Solution+20 mM HPEPES, pH 7.40) and dilute in 90 mL of distilled water. Adjust pH to 7.4 using 1.0 N NaOH and/or 1.0 N HCl.
        2.2 To prepare 10 mM stock solution of DiSBAC1(3), dissolve 3.8 mg DiSBAC1(3) in 1 mL DMSO
        2.3 To prepare 10% pluronic acid, dissolve 400 mg pluronic acid in 4 mL water. Heat to 37° C. to complete dissolution.
        2.4 To prepare 1× Loading Buffer, add 30 μL of stock DiSBAC1(3), 8 μL 10% pluronic acid, and 20.0 mg DB71 in the 1× FLIPR assay buffer.
        3. Load Cells with 1× Loading Buffer
        4. Remove cell plates from the incubator
        5. Add 100 μL of 1× Loading Buffer per well of 96-well plates or 25 μL per well of 384-well plates.
        6. Incubate plates at 37° C. for 30 minutes.
        7. Run the FLIPR Membrane Potential Assay
        7.1 Make 5× compound plate prior to running the FLIPR assay. Dissolve 27.5 mg of ATP (Sigma Cat# A3377) in 1 mL of sterile water to make a 50 mM stock solution. Make appropriate dilutions for 100 nM, 1 μM and 10 μM and transfer a minimum of 200 μL to each well of a compound plate.
        7.2 Confirm that Membrane Potential Filter is installed. Choose p2x2.fcf for experimental setup in the FLIPR software. Set up the appropriate experiment parameters.
        7.3 After incubation, transfer the plates directly to FLIPR and begin the Membrane Potential Assay.
        8. Run FLIPR and perform data analysis.
    
    


The curve of the ATP dose response should look similar to that shown in FIG. 2; an initial depolarization event depicted as an increase in fluorescence followed by repolarization or decay in signal near baseline. Also, EC50 should be approximately in the 10–100 nM range.
EXAMPLE 3
Measuring Membrane Potentials Using DiBAC1(3) in Combination with a Microscope
DiBAC1(3) is used to measure membrane potential change with a microscope as described by L. M. Loew (Methods in Cell Biology, vol. 38, pp 195–209).
EXAMPLE 4
Measuring Membrane Potentials Using DiSBAC1(3) in Combination with Flow Cytometer
DiBAC1(3) is used to measure membrane potential change with a flow cytometer as described by L. M. Loew (Methods in Cell Biology, Vol. 41, Part A, pp 195–209).
EXAMPLE 5
Water Solubility and Hydrophobicity Comparison of DiBAC and DiSBAC Dyes
DiSBAC1(3), DiSBAC2(3), DiSBAC3(3), DiSBAC4(3), DiBAC1(3) and DiBAC4(3) are dissolved in DMSO (3 mM). The DMSO stock solutions are respectively partitioned in 1:1 octanol/water mixture. The concentrations of the oxonol dyes in octanol and water layers are determined by absorption spectra. The results are summarized in the following table I. As shown in the table, DiSBAC1(3) and DiSBAC1(3) are much more hydrophilic than the other oxonol dyes. They also have much better water solubility.












TABLE 1









Absorbance




λ-max
Absorb-
Absorb-
in Water/




octanol
ance
ance in
Absorbance
Relative


Compound
(nm):
in Water:
Octanol:
in Octanol
Values:




















DiBAC1(3)
495
1.297
0.3104
4.179
1


DiBAC4(3)
497
0.002501
2.854
0.00088
0.00021


DiSBAC1(3)
538
0.06147
0.9126
0.0674
1


DiSBAC2(3)
543
0.01143
2.187
0.0052
0.078


DiSBAC3(3)
544
0.002256
4.331
0.0005
0.0077


DiSBAC4(3)
544
0.003318
3.226
<0.0010
<0.0077









EXAMPLE 6
Absorption Comparison of DiBAC and DiSBAC Dyes
DiSBAC1(3), DiSBAC2(3), DiSBAC3(3), DiSBAC4(3), DiBAC1(3) and DiBAC4(3) are dissolved in methanol (1 mM). The stock solutions are diluted with 1:1 methanol/water, and the absorption spectra are recorded in a spectrophotometer. As shown in FIG. 3, DiBAC1(3) and DiSBAC1(3) possess unexpected blue shift compared to the other oxonol dyes.
EXAMPLE 7
Fluorescence Comparison of DiBAC and DiSBAC Dyes
DiSBAC1(3), DiSBAC2(3), DiSBAC3(3), DiSBAC4(3), DiBAC1(3) and DiBAC4(3) are dissolved in methanol (1 mM). The stock solutions are diluted with 1:1 methanol/water, and the absorption spectra are recorded in a fluorometer. As shown in FIG. 4, DiBAC1(3) and DiSBAC1(3) possess unexpected blue shift compared to the other oxonol dyes.
EXAMPLE 8
Fluorescence Response Comparison of DiBAC and DiSBAC dyes for Sensing Membrane Potentials in FLIPR Assays
DiSBAC1(3), DiSBAC2(3), DiSBAC3(3), DiSBAC4(3), DiBAC1(3) and DiBAC4(3) are dissolved in DMSO (1 mM). The stock solutions are respectively used to assay membrane potential changes in the P2X2 cells in combination with FLIPRTM as described in Example 2. The results are summarized in the following table 2.









TABLE 2






Fluorescence enhancement by 10



Compounds
μM ATP stimulation (in folds)
Response speed

















DiBAC1(3)
3.7
fast


DiBAC4(3)
3.3
slow


DiSBAC1(3)
108.5
fast


DiSBAC2(3)
38.6
moderate


DiSBAC3(3)
14.5
slow


DiSBAC4(3)
2.3
slow









As shown in the Table 2, DiSBAC1(3) is much more sensitive, and has faster response to membrane potential change than the rest of the DiSBACs. DiBAC1(3) also has much faster response to membrane potential change than DiBAC4(3).
EXAMPLE 9
Use of DiSBAC1(3) as a Fluorescent Indicator of Transmembrane Potential Depolarization of PC 12 Cells
Protocols for transmembrane potential measurements are summarized briefly since they are similar to those given in detail in Example 1 above. The Bis-(1,3-dimethylthiobarbituric acid)trimethine oxonol, (DiSBAC1(3)), fluorescent reagent may be purchased from Molecular Probes (Eugene, Oreg., USA). The 1× Cell-Loading Buffer for DiSBAC2(3), consists of sodium-free Tyrode's Buffer (SFTB), 2.5 μM DiSBAC1,(3), and 200 μM Direct Blue 71 (as the fluorescence quencher).
A rat pheochromocytoma (adrenal) cloned cell line, PC12, is grown in RPMI 1640 culture medium with 10% fetal calf serum (FCS), 1% penicillin/streptomycin (PS), 2 mM L-glutamine, and 1 mM sodium pyruvate. Cells were grown in suspension, and subsequently centrifuged from growth medium and resuspended in DiSBAC2(3), 1× Cell-Loading Buffer. Approximately 100,000 cells were plated per well in a 96-well microtiter plate pre-coated with poly-D-lysine to enhance cell adhesion, centrifuged at 1000 rpm for 4 minutes, and placed in an incubator for an additional 20 minutes. Cells were not washed with any liquid medium, nor was the 1× Cell-Loading Buffer removed prior to performing fluorescence measurements.
The fluorescently labeled cells were analyzed for changes in membrane potential by using the FLIPRTM fluorescent imaging plate reader. Briefly, cells were depolarized with addition of 75 mM potassium gluconate in sodium-containing Tyrode's Buffer (SCTB). To inhibit voltage-gated sodium channels cells were previously incubated with 100 μM tetrodotoxin (TTX) for 5 minutes prior to depolarization. The data reveal that cell-depolarization (due to potassium addition) causes increased DiSBAC1(3) fluorescence. Inhibition of sodium channels by TTX results in smaller changes in membrane potential upon potassium addition as indicated by a smaller increase in fluorescence as compared to the positive control (75 mM potassium gluconate without TTX).
The above examples illustrate the present invention and are not intended to limit the invention in spirit or scope.
REFERENCES


    
    
        1. Zochowski M, Wachowiak M, Falk C X, Cohen L B, Lam Y W, Antic S, Zecevic D., Imaging membrane potential with voltage-sensitive dyes. Biol Bull 198, 1–21(2000).
        2. Plasek J, Sigler K, Slow fluorescent indicators of membrane potential: a survey of different approaches to probe response analysis. J Photochem Photobiol B 33, 101–124 (1996).
        3. Loew L M., Characterization of Potentiometric Membrane Dyes. Adv Chem Ser 235, 151 (1994).
        4. Wu J-Y, Cohen L B., Fast Multisite Optical Measurement of Membrane Potential. In Fluorescent and Luminescent Probes for Biological Activity, Mason W T, Ed., pp. 389–404 (1993).
        5. Loew L M., Potentiometric Membrane Dyes. In Fluorescent and Luminescent Probes for Biological Activity, Mason W T, 2nd Ed. Pp. 210–221 (1999).
        6. Smith J C., Potential-sensitive molecular probes in membranes of bioenergetic relevance. Biochim Biophys Acta 1016, 1–28 (1990).
        7. Gross D, Loew L M., Fluorescent indicators of membrane potential: microspectrofluorometry and imaging. In Methods Cell Biol 30, 193–218 (1989).
        8. Freedman J C, Novak T S. Optical measurement of membrane potential in cells, organelles, and vesicles. Methods Enzymol 172, 102–122 (1989).
        9. Bronner C, Landry Y. The use of the potential-sensitive fluorescent probe bisoxonol in mast cells. Biochim Biophys Acta 1070, 321–331 (1991).
        10. Shapiro H M. Cell membrane potential analysis. Methods Cell Biol 41, 121–133 (1994).
        11. Loew L M. Confocal microscopy of potentiometric fluorescent dyes. Methods Cell Biol 38, 195–209(1993).
        12. Gonzalez J E, Tsien R Y. Improved indicators of cell membrane potential that use fluorescence resonance energy transfer. Chem Biol 4, 269–277 (1997).

## Claims

1. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

a second flourescent or luminescent reagent that can undergo energy transfer with the first compound.

2. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

and a second compound that is a fluorescent or luminescent reagent.

3. The test kit of claim 2, wherein the second compound is a fluorescent or luminescent reagent than can undergo energy transfer with the first compound by either donating excited state energy to the first compound, or accepting excited state energy from the first compound.

4. The test kit of claim 2, wherein the second compound is a calcium indicator.

5. The test kit of claim 2, wherein the second compound is Indo-1, Fura-2, Fluo-3, Calcium Green, or Fluo-4.

6. The test kit of claim 2, wherein n is 1.

7. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

and a second compound that is a calcium indicator.

8. The test kit of claim 7, wherein the second compound is a fluorescent or luminescent reagent than can undergo energy transfer with the first compound by either donating excited state energy to the first compound, or accepting excited state energy from the first compound.

9. The test kit of claim 7, wherein the second compound is Indo-1, Fura-2, Fluo-3, Calcium Green, or Fluo-4.

10. The test kit of claim 7, wherein the second compound is a non-fluorescent colored reagent.

11. The test kit of claim 10 , wherein the second compound is a non- fluorescent reagent that is a fluorescence quencher.

12. The test kit of claim 10, wherein n is 1.

13. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

and a second compound that is Indo-1, Fura-2, Fluo-3, Calcium Green, or Fluo-4.

14. The test kit of claim 13, wherein the second compound can undergo energy transfer with the first compound.

15. The test kit of claim 13, wherein n is 1.

16. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

and a second compound that is a non-fluorescent colored reagent that is a fluorescence quencher.

17. The test kit of claim 16, wherein n is 1.

18. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

and a second non-fluorescent reagent that is a fluorescence quencher that can undergo energy transfer with the first compound to reduce or eliminate the fluorescence or luminescence of the first compound.

19. The test kit of claim 18, wherein the second non-fluorescent reagent is not substantially membrane-permeant.

20. A test kit for measuring membrane potential changes comprising a first fluorescent or luminescent compound having the formula



wherein X is O or S; and
n is 1 or 2;

and a second non-fluorescent reagent that is Direct Blue 71 that can undergo energy transfer with the first compound to reduce or eliminate the fluorescence or luminescence of the first compound.