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          About NIAMS
          Pawel Trzaskoma, Ph.D.





Pawel Trzaskoma, Ph.D.


Research Fellow
    Laboratory of Molecular Immunogenetics, Genomics and Immunity Section Pawel Trzaskoma, Ph.D. 
            Contact Information

                                                  301-435-3052
                
                                                9000 Rockville Pike
                  
            10 Center Drive
      
                  
            Building 10, Room 13C120
      
                                   Bethesda MD 20892
                
                                                pawel.trzaskoma@nih.gov 
                Summary
          Pawel Trzaskoma earned his Ph.D. in cell biology in 2019. He is interested in microscopy, 3D chromatin organization, and its role in gene transcription. 

            Scientific Publications
              Activation-induced chromatin reorganization in neurons depends on HDAC1 activity.

    Grabowska A, Sas-Nowosielska H, Wojtas B, Holm-Kaczmarek D, Januszewicz E, Yushkevich Y, Czaban I, Trzaskoma P, Krawczyk K, Gielniewski B, Martin-Gonzalez A, Filipkowski RK, Olszynski KH, Bernas T, Szczepankiewicz AA, Sliwinska MA, Kanhema T, Bramham CR, Bokota G, Plewczynski D, Wilczynski GM, Magalska A
        

                    Cell Rep.
        
                    2022 Feb 15;
        
                    38(7).
        
                    doi: 10.1016/j.celrep.2022.110352
                            PMID: 35172152
  PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies.

    Bokota G, Sroka J, Basu S, Das N, Trzaskoma P, Yushkevich Y, Grabowska A, Magalska A, Plewczynski D
        

                    BMC Bioinformatics.
        
                    2021 Feb 17;
        
                    22(1).
        
                    doi: 10.1186/s12859-021-03984-1
                            PMID: 33596823
  Colocalization Colormap -an ImageJ Plugin for the Quantification and Visualization of Colocalized Signals.

    Gorlewicz A, Krawczyk K, Szczepankiewicz AA, Trzaskoma P, Mulle C, Wilczynski GM
        

                    Neuroinformatics.
        
                    2020 Oct;
        
                    18(4).
        
                    doi: 10.1007/s12021-020-09465-9
                            PMID: 32361813
  Ultrastructural visualization of 3D chromatin folding using volume electron microscopy and DNA in situ hybridization.

    Trzaskoma P, Ruszczycki B, Lee B, Pels KK, Krawczyk K, Bokota G, Szczepankiewicz AA, Aaron J, Walczak A, Śliwińska MA, Magalska A, Kadlof M, Wolny A, Parteka Z, Arabasz S, Kiss-Arabasz M, Plewczyński D, Ruan Y, Wilczyński GM
        

                    Nat Commun.
        
                    2020 May 1;
        
                    11(1).
        
                    doi: 10.1038/s41467-020-15987-2
                            PMID: 32358536
  Blank spots on the map: some current questions on nuclear organization and genome architecture.

    Adriaens C, Serebryannyy LA, Feric M, Schibler A, Meaburn KJ, Kubben N, Trzaskoma P, Shachar S, Vidak S, Finn EH, Sood V, Pegoraro G, Misteli T
        

                    Histochem Cell Biol.
        
                    2018 Dec;
        
                    150(6).
        
                    doi: 10.1007/s00418-018-1726-1
                            PMID: 30238154
  Pericardium: structure and function in health and disease.

    Jaworska-Wilczynska M, Trzaskoma P, Szczepankiewicz AA, Hryniewiecki T
        

                    Folia Histochem Cytobiol.
        
                    2016;
        
                    54(3).
        
                    doi: 10.5603/FHC.a2016.0014
                            PMID: 27654013
  CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

    Tang Z, Luo OJ, Li X, Zheng M, Zhu JJ, Szalaj P, Trzaskoma P, Magalska A, Wlodarczyk J, Ruszczycki B, Michalski P, Piecuch E, Wang P, Wang D, Tian SZ, Penrad-Mobayed M, Sachs LM, Ruan X, Wei CL, Liu ET, Wilczynski GM, Plewczynski D, Li G, Ruan Y
        

                    Cell.
        
                    2015 Dec 17;
        
                    163(7).
        
                    doi: 10.1016/j.cell.2015.11.024
                            PMID: 26686651
  The biphasic interphase-mitotic polarity of cell nuclei induced under DNA replication stress seems to be correlated with Pin2 localization in root meristems of Allium cepa.

    Żabka A, Trzaskoma P, Winnicki K, Polit JT, Chmielnicka A, Maszewski J
        

                    J Plant Physiol.
        
                    2015 Feb 1;
        
                    174().
        
                    doi: 10.1016/j.jplph.2014.09.013
                            PMID: 25462968
  CD44 regulates dendrite morphogenesis through Src tyrosine kinase-dependent positioning of the Golgi.

    Skupien A, Konopka A, Trzaskoma P, Labus J, Gorlewicz A, Swiech L, Babraj M, Dolezyczek H, Figiel I, Ponimaskin E, Wlodarczyk J, Jaworski J, Wilczynski GM, Dzwonek J
        

                    J Cell Sci.
        
                    2014 Dec 1;
        
                    127(Pt 23).
        
                    doi: 10.1242/jcs.154542
                            PMID: 25300795
  Dissimilar effects of β-lapachone- and hydroxyurea-induced DNA replication stress in root meristem cells of Allium cepa.

    Zabka A, Trzaskoma P, Maszewski J
        

                    Plant Physiol Biochem.
        
                    2013 Dec;
        
                    73().
        
                    doi: 10.1016/j.plaphy.2013.10.001
                            PMID: 24184448 
          Education
              
            **Nencki Institute of Experimental Biology, Polish Academy of Sciences (PAS)**
Ph.D., Cell Biology (2019)

**University of Warsaw**
M.Sc., Molecular Biotechnology (2014)

**University of Lodz**
B.Sc., Biotechnology (2012)             
                        Experience
              
            **Postdoctoral Fellow**
NIH/NIAMS (2019-present)

**Ph.D. Student**
Nencki Institute, PAS (2014-2019)

**Special Volunteer**
NIH/NCI (2018)

**Short Term Visitor**
Advanced Imaging Center, Janelia Research Campus HHMI (2016)


Last Updated: June 2023


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