Exhibit 31.1 CERTIFICATION I, George G. Usher, Chief Executive Officer of Polydex Pharmaceuticals Limited (the "Company") certify that: 1.
	I have reviewed this quarterly report on Form 10-Q of the Company for the fiscal quarter ended July 31, 2009;2.
	Based on my knowledge, this quarterly report does not contain any untrue statement of a material fact or omit to state a material fact necessary to make the statements made, in light of the circumstances under which such
statements were made, not misleading with respect to the period covered by this report;3.
	Based on my knowledge, the financial statements, and other financial information included in this report, fairly present in all material respects the financial condition, results of operations and cash flows of the Company as
of, and for, the period presented in this report;4.
	The Company's other certifying officer and I are responsible for establishing and maintaining disclosure controls and procedures (as defined in Exchange Act Rules 13a-15(e) and 15d-15(e) )and internal control over financial
reporting (as defined in Exchange Act Rules 13a-15(f)) and 15d-15(f)) for the Company and have:(a)
	designed such disclosure controls and procedures, or caused such disclosure controls and procedures to be designed under our supervision, to ensure that material information relating to the Company, including its consolidated
subsidiaries, is made known to us by others within those entities, particularly during the period in which this report was being prepared;(b)
	designed such internal control over financial reporting, or caused such internal control over financial reporting to be designed under our supervision, to provide reasonable assurance regarding the reliability of financial
reporting and the preparation of financial statements for external purposes in accordance with generally accepted accounting principals;(c)
	evaluated the effectiveness of the Company's disclosure controls and procedures and presented in this report our conclusions about the effectiveness of the disclosure controls and procedures, as of the end of the period covered
by this report based on such evaluation; and(d)
	disclosed in this report any change in the Company's internal control over financial reporting that occurred during the Company's most recent fiscal quarter that has materially affected, or is reasonably likely to materially
affect the Company's internal control over financial reporting; and5.
	The Company's other certifying officer and I have disclosed, based on our most recent evaluation, to the Company's auditors and the audit committee of the Company's board of directors:(a)
	all significant deficiencies and material weaknesses in the design or operation of internal control over financial reporting which are reasonably likely to adversely affect the Company's ability to record, process, summarize and report financial information; and(b)
	any fraud, whether or not material, that involves management or other employees
who have a significant role in the Company's internal control over financial reporting. Dated: September 14, 2009 /s/ George G. UsherChief Executive Officer 
Polydex Pharmaceuticals Limited


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