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Information Technology LaboratorySoftware and Systems Division

## Information Systems Group

# Peter Bajcsy Bio - Page 2

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## Publications

**More Journal Publications ....**
                  - J. Chalfoun, M. Majurski, A. Peskin, C. Breen, P. Bajcsy and M. Brady, "Empirical Gradient Threshold Technique for Automated Segmentation across Image Modalities and Cell Lines," Journal of Microscopy, doi: 10.1111/jmi.12269, June 5, 2015.   
                  - J. Chalfoun, M. Majurski, K. Bhadriraju, S. Lund, P. Bajcsy, M. Brady, "Background Intensity Correction for Terabyte-Sized Time-Lapse Images," Journal of Microscopy, 257:226–238, 2015.  
                  - M. Wang, M. Misakian, H-J. He, P. Bajcsy, F. Abbasi, J. M Davis, K. D Cole, I. V Turko and L. Wang, "Quantifying CD4 Receptor Protein in Two Human CD4+ Lymphocyte Preparations for Quantitative Flow Cytometry," Clinical Proteomics, MS   6409624901259263, 2014.
                  - J. Chalfoun, M. Kociolek, A. Dima, A. Cardone, A. Peskin, P. Bajcsy, and M. Brady, "Segmenting Time-lapse Phase Contrast Images of Adjacent NIH 3T3 Cells," Journal of Microscopy, vol. 249, no. 1, pp. 41–52, 0022–2720, 2013.
                  -  P. Bajcsy, Y.-F. Lin, A. Yahja, and C.-Y. Kim, "A Framework for Accurate Geospatial Modeling using Image Ranking and Machine Learning," J. Hydroinformatics, vol. 13, no. 3, pp. 443–460, 2011.
                  -  M. Simeone, J. Guiliano, R. Kooper, and P. Bajcsy, "Digging into Data Using New Collaborative Infrastructures Supporting Humanities-based Computer Science Research," First Monday Electron. J., vol. 16, no. 5, pp. 1–14, 2012.
                  -  P. Bajcsy, R. Kooper, and S.-C. Lee, "Understanding Preservation and Reconstruction Requirements for Computer Assisted Decision Processes," Decis. Support Syst. J., vol. 50, no. 1, pp. 316–324, 2010.
                  -  L. Marini, R. Kooper, J. Myers, and P. Bajcsy, "Towards Digital Watersheds using Dynamic Publications," Cyberinfrastructure Spec. issue Water Manag. Thomas Telford Journals, no. WM1, pp. 1–12, 2010.
                  -  M. Markus, M. I. Hejazi, P. Bajcsy, O. Giustolisi, and Savic, D.A., "Prediction of Weekly Nitrate-N Fluctuations in a Small Agricultural Watershed in Illinois," J. Hydroinformatics Hydroinformatics, vol. 12, no. 1, pp. 251–261, 2010.
                  -  A. Singh, B. S. Minsker, and P. Bajcsy, "Image-Based Machine Learning For Reduction Of User-Fatigue In An Interactive Model Calibration System," J. Comput. Civ. Eng., vol. 24, no. 3, pp. 241–251, 2010.
                  -  P. Bajcsy, "A Perspective on Cyberinfrastructure for Water Research Driven by Informatics Methodologies," Geogr. Compass, vol. 2, no. 6, pp. 2040–2061, Nov. 2008.
                  -  R. Kooper, A. Shirk, S.-C. Lee, A. Lin, R. Folberg, and P. Bajcsy, "3D Medical Volume Reconstruction Using Web Services.," Elsevier Int. J. Comput. Biol. Med., vol. 38, no. 4, pp. 490–500, Apr. 2008.
                  -  S.-C. Lee and P. Bajcsy, "Three-dimensional Volume Reconstruction Based on Trajectory Fusion from Confocal Laser Scanning Microscope Images," J. Comput. Vis. Image Underst., no. 110, pp. 19–31, 2008.
                  -  P. Bajcsy, "An Overview of DNA Microarray Image Requirements for Automated Processing," Comput. Soc. India, Commun., vol. 30, no. 10, pp. 18–23, 2007.
                  -  A. Lin, Z. Ai, S.-C. Lee, P. Bajcsy, J. Pe'er, L. Leach, A. J. Maniotis, and R. Folberg, "Comparing the Surface Area of Looping Vasculogenic Mimicry Patterns with the Surface Area of Blood Vessels," Appl. Immunohistochem. Mol. Morphol., vol. 15, no. 1, pp. 113–119, 2007.
                  -  P. Bajcsy, "An Overview of DNA Microarray Grid Alignment and Foreground Separation Approaches," EURASIP J. Appl. Signal Process. Adv. Signal Process. Tech. Bioinforma., vol. 2006, pp. 1–13, 2006.
                  -  S.-C. Lee, P. Bajcsy, A. Lin, and R. Folberg, "Accuracy Evaluation for Region Centroid-Based Registration of Fluorescent CLSM Imagery," EURASIP J. Appl. Signal Process. Spec. Issue Perform. Eval. Image Process., pp. 1–11, 2006.
                  -  S.-C. Lee and P. Bajcsy, "Intensity Correction of Fluorescent Confocal Laser Scanning Microscope Images by Mean-Weight Filtering," J. Microsc., vol. 221, no. 2, pp. 122–136, 2006.
                  -  P. Bajcsy and P. Groves, "Methodology For Hyperspectral Band Selection," Photogramm. Eng. Remote Sens. J., vol. 70, no. 7, pp. 793–802, 2004.
                  -  S. Bajwa, P. Bajcsy, P. Groves, and L. Tian, "Hyperspectral Image Data Mining for Band Selection in Agricultural Applications," Trans. Am. Soc. Agric. Biol. Eng., vol. 47, no. 3, pp. 895–907, 2004.
                  -  P. Bajcsy, "GridLine: Automatic Grid Alignment in DNA Microarray Scans," IEEE Trans. Image Process., vol. 13, no. 1, pp. 15–25, 2004.
                  -  X. Chen, Z. Ai, M. Rasmussen, P. Bajcsy, L. Auvil, M. Welge, L. Leach, A. Vangveeravong, Sumalee, Maniotis, and R. Folberg, "Three-Dimensional Reconstruction of Extravascular Matrix Patterns and Blood Vessels in Human Uveal Melanoma Tissue: Techniques and Preliminary Findings," Invest. Ophthalmol. Vis. Sci., vol. 44, no. 7, pp. 2834–2840, Jul. 2003.
                  -  P. Bajcsy, D. Sullivan, and P. Ryan, "Estimating Weibull Distribution Parameters," Intell. Eng. Syst. Through Artif. Neural Networks, vol. 10, pp. 677–682, 2000.
                  -  P. Bajcsy and N. Ahuja, "Location and Density-based Hierarchical Clustering Using Similarity Analysis," IEEE Trans. Pattern Anal. Mach. Intell., vol. 20, no. 9, pp. 1011–1015, 1998.
                  -  P. Bajcsy, "Building and Evaluation of an Expert System," Autom. J. Theory Pract., vol. 34, no. 3, p. 35, 1991.
                  -  P. Bajcsy, S.-C. Lee, A. Lin, and R. Folberg, "3D Volume Reconstruction of Extracellular Matrix Proteins in Uveal Melanoma from Fluorescent Confocal Laser Scanning Microscope Images," J. Microsc., vol. 221, no. 1, pp. 30–45, 2006. 

**More books and book chapters ....**
                  -  P. Bajcsy, R. Kooper, L. Marini, and J. Myers, "Community-Scale Cyberinfrastructure for Exploratory Science," in in Cyberinfrastructure Technologies and Applications, J. Cao, Ed. Nova Science Publishers, Inc., 2009, pp. 243–262.
                  -  S. Lee and P. Bajcsy, "Spatial Intensity Correction of Fluorescent Confocal Laser Scanning Microscope Images," in in Computer Vision Approaches to Medical Image Analysis, Lecture No., Heidelberg: Springer Berlin, 2006, pp. 143–154.
                  -  P. Kumar, J. Alameda, P. Bajcsy, M. Folk, and M. Markus, Hydroinformatics: Data Integrative Approaches in Computation, Analysis, and Modeling. CRC Press LLC, 2006, p. 534p.
                  -  P. Bajcsy, L. Liu, and M. Band, "DNA Microarray Image Processing," in in DNA Array Image Analysis: Nuts & Bolts (Nuts & Bolts series), G. Camberova, Ed. DNA Press, 2007, pp. 1–77.
                  -  P. Bajcsy, J. Han, L. Liu, and J. Young, "Survey of Bio-Data Analysis from Data Mining Perspective," in in Data Mining in Bioinformatics, J. T. L. Wang, M. J. Zaki, H. T. T. Toivonen, and D. Shasha, Eds. 2004, pp. 9–39.     

**More Conference Publications ....**
                  -  S. J.Florczyk, M. Simon, D. Juba, S. Sarkar, D. Chen, P. J. Baker, A. Cardone, M. Brady, P. Bajcsy, and C. G. Simon Jr., "3D Stem Cell Morphotyping of Tissue Engineering Scaffold Niches," the 2015 Society for Biomaterials Annual Meeting, Charlotte NC, April 15-18, 2015.
                  - A. Vandecreme, T. Blattner, M. Majurski, P. Bajcsy, K. Scott, and J-H. J. Scott, "From Image Tiles to Web-Based Interactive Measurements in One Stop," Microscopy and Microanalyses, Portland, OR, August 2-6, 2015.
                  - Z. Rajabi, J. Kosecka, P. Bajcsy: Confidence Estimation in Stem Cell Classification, BioImage Informatics Conference, NIST Gaithersburg, October 14-16, 2015.
                  - P. Bajcsy, P. Nguyen, A. Vandecreme, and M. Brady, "Spatial Computations over Terabyte-Sized Images on Hadoop Platforms," 2014 IEEE International Conference on Big Data (IEEE BigData 2014), pp. 816-824, Washington DC, USA, October 27-30, 2014.
                  - A. Peskin, S. Lund, Y-S Li-Baboud, M. Halter, A. Plant, and P. Bajcsy, "Automated Ranking of Stem Cell Colonies By Translating Biological Rules to Computational Models," Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), pp. 13-22, Los Angeles CA, September 20-23, 2014.
                  - A. Vandecreme, P. Bajcsy, N. W.M. Ritchie, and J-H. J. Scott, "Interactive Analysis of Terabyte-sized SEM-EDS Hyperspectral Images," Microscopy and Microanalyses, Hartford, CT, August 3-7, 2014.
                  - K. Bhadriraju, J. Chalfoun, M. Halter, J. Amelot, M. Majurski, P. Bajcsy, K-Y. Park, B. Mallon, L. Wang, J. Elliott, M. Brady, A. L. Plant, "large-scale Time-lapse Microscopy of the Dynamics of OTC-4 Expression in Human Embryonic Stem Cell Cultures, "CYTO 2014, May 17-21, 2014, Ft. Lauderdale, FL.
                  - W. Tutak, G. Jyotsnendu, P. Bajcsy, C. G. Simon, Jr., "Effect of Nanofiber Scaffolds on Stem Cell Organelle 3D Shape, " 2014 Annual Meeting & Exposition, Society for Biomaterials, Denver, CO, April 16-19, 2014.
                  - P. Bajcsy, A. Vandecreme, J. Amelot, P. Nguyen, J. Chalfoun, M. Brady, "Terabyte-sized Image Computations on Hadoop Cluster Platforms," IEEE International Conference on Big Data, Santa Clara, CA, USA, October 6-9, 2013.
                  - M. Halter, Y-S. Li-Baboud, A. Peskin, P. Bajcsy, D. Hoeppner, A. L. Plant, "Addressing Uncertainty in the Automated Evaluation of Stem Cell Colony Quality," CYTO 2013, San Diego, CA, May 19-22, 2013.  
                  - M. Halter, K. Bhadriraju, J. Chalfoun, P. Bajcsy, and A. Plant, "Time-Lapse Image Data for Predictive Modeling of Cell Fate," Fall Conference entitled "Turning Images to Knowledge: Large-Scale 3D Image Annotation, Management, and Visualization", Janelia Research Farm, October 29-31, 2012.
                  - P. Bajcsy, B. Long, A. Vandecreme, P. Khouri-saba, and M. Brady, "Toward Web Accessible Reference Measurements of Image Similarity," in CYTO 2012: ISAC's XXVII Congress, 2012.
                  - P. Bajcsy, J. Chalfoun, and M. Brady, "Toward a Recommendation System for Image Similarity Metrics," in Imaging and Signal Processing in Health Care and Technology, 2012.
                  - P. Bajcsy, R. Kooper, L. Marini, K. McHenry, and M. Ondrejcek, "A framework for understanding file format conversions," in Proceedings of the 2010 Roadmap for Digital Preservation Interoperability Framework Workshop, 2011.
                  - K. McHenry, R. Kooper, M. Ondrejcek, L. Marini, and P. Bajcsy, "A Mosaic of Software," in 2011 Microsoft Research eScience Conference, 2011.
                  - G. Shi, V. Kindratenko, R. Kooper, and P. Bajcsy, "GPU Acceleration of an Image Characterization Algorithm for Document Similarity Analysis," in The 9th ACS/IEEE International Conference on Computer Systems and Applications (AICCSA 2011), 2011.
                  - K. McHenry, M. Ondrejcek, L. Marini, R. Kooper, and P. Bajcsy, "Towards a Universal Viewer for Digital Content , URL: , June 1-3, 2011, Japan," in The Executable Paper Grand Challenge, Organized by the Journal of Computational Science, Elsevier, and the International Conference on Computational Science (ICCS)., 2011.
                  - P. Bajcsy, R. Kooper, L. Marini, T. Shaw, A. D. Hedeman, R. Markley, M. Simeone, N. Hanson, S. Appleford, D. Rehrberger, J. Richardson, M. Geimer, S. M. Cohen, P. Ainsworth, M. Meredith, and J. Guiliano, "Supporting Scientific Discoveries to Answer Art Authorship Related Questions Across Diverse Disciplines and Geographically Distributed Resources," in Digital Humanities, 2011.
                  - T. Shaw and P. Bajcsy, "Automation of Digital Historical Map Analyses," in IS&T/SPIE Electronic Imaging, 2011, pp. 7869–09.
                  - R. Kooper and P. Bajcsy, "Computational Scalability of Large Size Image Dissemination," in IS&T/SPIE Electronic Imaging, 2011, pp. 7872–23.
                  - R. Kooper, P. Bajcsy, and N. M. Hernández, "Stitching Giga Pixel Images Using Parallel Computing," in IS&T/SPIE Electronic Imaging, 2011, pp. 7872–17.
                  - T. Shaw, M. Simeone, R. Markley, and P. Bajcsy, "Quantifying Historical Geographic Knowledge From Digital Maps," in Microsoft Research eScience Workshop, 2010.
                  - M. Ondrejcek, K. McHenry, and P. Bajcsy, "The Conversion Software Registry," in Microsoft Research eScience Workshop, 2010.
                  - T. Shaw, N. Hansen, A. D. Hedeman, and P. Bajcsy, "Quantifying Differences between Medieval Artistic Hands Using Statistical Analyses in Multiple Color Spaces," in UK All Hands eScience meeting, 2010.
                  - R. Malik and P. Bajcsy, "Understanding the Impact of Visual Quality Parameters on Activities in Immersive Systems," in Proceedings of the 2010 IEEE International Conference on Virtual Environments, Human-Computer Interfaces and Measurement Systems, 2010.
                  - R. Malik, M. Dobosh, S. M. Poole, K. McHenry, and P. Bajcsy, "Evaluating the Effectiveness of Communication Media on Remote Collaboration," in Proceedings of the 2010 IEEE International Conference on Virtual Environments, Human-Computer Interfaces and Measurement Systems, 2010.
                  - P. Bajcsy and M. Moslemi, "Discovering Salient Characteristics of Authors of Art Works," in IS&T/SPIE Electronic Imaging, 2010, vol. 7, no. 1, pp. 7531–10.
                  - B. Raichel and P. Bajcsy, "Robust Video and Audio Based Synchronization of Multimedia Files," in IS&T/SPIE Electronic Imaging, 2010, p. 7540B–40.
                  - M. Ondrejcek, J. Kastner, and P. Bajcsy, "A Methodology for File Relationship Discovery ," in the 5th International IEEE eScience conference, 2009.
                  - K. McHenry, R. Kooper, and P. Bajcsy, "Towards a Universal, Quantifiable, and Scalable File Format Converter," in 2009 Fifth IEEE International Conference on e-Science, 2009, pp. 140–147.
                  - R. Kooper and P. Bajcsy, "Comprehensive Appraisals of Contemporary Documents," in Microsoft Research eScience workshop, 2009.
                  - P. Bajcsy, K. McHenry, H. J. Na, R. Malik, A. Spencer, S. K. Lee, R. Kooper, and M. Frogley, "Immersive Environments For Rehabilitation Activities," in ACM International Conference on Multimedia, 2009.
                  - K. McHenry and P. Bajcsy, "Key Aspects in 3D File Format Conversions," in Joint Annual Meeting of the Society of American Archivists and the Council of State Archivists, 2009.
                  - K. McHenry and P. Bajcsy, "3D Data Analysis," in WVU/NETL/ERA Workshop on Digital Preservation of Complex Engineering Data, 2009.
                  - P. Bajcsy and K. McHenry, "Examining Preservation and Reconstruction of Existing Simulation Software to Understand Software Sustainability," in Proceedings of the workshop on Cyberinfrastructure Software Sustainability, 2009.
                  - P. Bajcsy, Y.-F. Lin, and A. Yahja, "Infusing Information Theory for Understanding Hydrologic Recharge and Discharge Processes," in AGU, Fall Meet. Suppl., 2008, p. IN13.
                  - S. K. Lee, K. McHenry, R. Kooper, and P. Bajcsy, "Characterizing Human Subjects In Real-Time And Three-Dimensional Spaces By Integrating Thermal-Infrared And Visible Spectrum Cameras," in 2009 IEEE International Conference on Multimedia & Expo (ICME)., 2009.
                  - P. Bajcsy, M. Frogley, R. Kooper, S. K. Lee, R. Malik, K. McHenry, H. J. Na, and A. Spencer, "Design And Use Of Immersive Environments For Regaining Proprioceptive Abilities," in IEEE International Conference on Multimedia & Expo (ICME)., 2009.
                  - Y.-F. Lin, P. Bajcsy, A. Yahja, and C. Kim, "Evaluation of Alternative Geospatial Models using Image Ranking and Machine Learning: An Application in Shallow Groundwater Recharge and Discharge," in ASCE Conf. Proc. 342, 174, 2009.
                  - R. Malik and P. Bajcsy, "Optimal Stereo Camera Placement Under Spatially Varying Resolution Requirements," in Proceedings of the 2nd International Conference on Immersive Telecommunications, 2009.
                  - S.-C. Lee, W. McFadden, and P. Bajcsy, "Text, Image and Vector Graphics Based Appraisal of Contemporary Documents," in Proceedings of the Seventh International Conference on Machine Learning and Applications, 2008.
                  - R. Malik and P. Bajcsy, "Automated Placement of Multiple Stereo Cameras," in OMNIVIS'2008, Proceedings of the Eighth Workshop on Omnidirectional Vision, Camera Networks and Non-classical Cameras held in conjunction with ECCV 2008, 2008.
                  - M. Ondrejcek, R. Kooper, L. Marini, and P. Bajcsy, "From Large Volumes Of Scanned Lincoln Papers To Virtual Observatories," in UK eScience All-Hands Meeting, Crossing Boundaries: Computational Science, E-Science and Global E-Infrastructures, 2008.
                  - J. D. Myers, J. Futrelle, J. Gaynor, J. Plutchak, P. Bajcsy, J. Kastner, K. Kotwani, J. S. Lee, L. Marini, R. E. McGrath, T. McLaren, and Y. Liu, "Embedding Data within Knowledge Spaces," in UK e-Science All-Hands-Meeting, 2008.
                  - J. D. Myers, L. Marini, R. Kooper, T. McLaren, R. E. McGrath, J. Futrelle, P. Bajcsy, A. Collier, Y. Liu, and S. Hampton, "A Digital Synthesis Framework for Virtual Observatories," in UK e-Science All-Hands-Meeting 2008, 2008.
                  - P. Bajcsy and S.-C. Lee, "Computer Assisted Appraisal of Contemporary PDF Documents," in ARCHIVES 2008: Archival R/Evolution & Identities, 2008.
                  - P. Bajcsy, M. Johnson, S.-K. Lee, and R. Kooper, "Real Time Localization and 3D Depth Estimation Across Disparate Sensing Systems: Toward Hazard Aware and Tele-Immersive Spaces," in Proceedings of the 15th International Conference on Systems, Signals and Image Processing (IWSSIP), 2008.
                  - M. Johnson and P. Bajcsy, "Integration of Thermal and Visible Imagery for Robust Foreground Detection in Tele-immersive Spaces," in Proceedings of the 11th International Conference on Information Fusion, 2008.
                  - S.-C. Lee and P. Bajcsy, "Understanding Challenges in Preserving and Reconstructing Computer-Assisted Medical Decision Processes," in Proceedings of the Workshop on Machine Learning in Biomedicine and Bioinformatics (MLBB07) of the 2007 International Conference on Machine Learning and Application (ICMLA07), 2007.
                  - Y.-F. Lin, P. Bajcsy, J. A. Valocchi, C.-Y. Kim, and J. Wang, "Evaluation of Alternative Conceptual Models Using Interdisciplinary Information: An Application in Shallow Groundwater Recharge and Discharge," in AGU, Fall Meet. Suppl., 2007, p. H31G–0738.
                  - L. Marini, R. Kooper., P. Bajcsy, and J. Myers, "Supporting exploration and collaboration in scientific workflow systems," in AGU, Fall Meet. Suppl., 2007, p. IN31C–07.
                  - R. Kooper, L. Marini, B. Minsker, J. Myers, and P. Bajcsy, "CyberIntegrator: A Highly Interactive Scientific Process Management Environment to Support Earth Observatories," in Geoinformatics Conference, 2007.
                  - P. Bajcsy, C.-Y. Kim, Q. Li, R. Kooper, V. Mehra, R. Robertson, and P. Kumar, "GeoLearn: An Exploratory Framework for Extracting Information and Knowledge from Remote Sensing Imagery," in Proceedings of the 32nd International Symposium on Remote Sensing of Environment Sustainable Development Through Global Earth Observations, 2007.
                  - P. Bajcsy, R. Kooper, Y. Keselman, Q. Li, W. Feng, V. Mehra, R. Richard, and P. Kumar, "GeoLearn: Prediction Modeling Using Large Size Geospatial Raster and Vector Data," in EOS Trans. AGU, 87(52), Fall Meet. Suppl..,, 2006, p. IN41C–06.
                  - K. L. Watkin, L. Ciobanu, P. Bajcsy, and S. London, "High Resolution MRI Microscopic Neuro-Imaging Studies and Voice Disorders," in Proceedings of the 7th International Conference Advances in Quantitative Laryngology, Voice and Speech Research, 2006.
                  - Y.-F. Lin, P. Bajcsy, J. Wang, A. Valocchi, and R. Hunt, "Development of Point-To-Zone Pattern Recognition And Learning Utilities For Groundwater Recharge And Discharge Estimation," in The Geological Society of America, 2006.
                  - P. Bajcsy, R. Kooper, L. Marini, D. Clutter, and M. Markus, "Visualization and Data Mining Tools Applied to Algal Biomass Prediction in Illinois Streams," in Proceedings of the 7th International Conference on Hydroinformatics, vol. 2, 2006, pp. 926–933.
                  - J. Futrelle, J. Myers, B. Minsker, and P. Bajcsy, "Community-based Metadata Integration for Environmental Research," in Proceedings of the 7th International Conference on Hydro-science an Engineering (ICHE), 2006.
                  - P. Bajcsy, R. Kooper, L. Marini, B. Minsker, and J. Myers, "CyberIntegrator: A Meta-Workflow System Designed for Solving Complex Scientific Problems using Heterogeneous Tools," in Proceedings of the Geoinformatics Conference, 2005, no. 5, pp. 1–30.
                  - S.-C. Lee and P. Bajcsy, "Three-Dimensional Volume Reconstruction Based on Trajectory Fusion from Confocal Laser Scanning Microscope Images," in 2006 IEEE Computer Society Conference on Computer Vision and Pattern Recognition - Volume 2 (CVPR'06), 2006, vol. 2, pp. 2221–2228.
                  - S.-C. Lee and P. Bajcsy, "Spatial Intensity Correction of Fluorescent Confocal Laser Scanning Microscope Images," in Proceedings of ECCV - the Computer Vision Approaches to Medical Image Analysis Workshop (CVAMIA) 2006, 2006.
                  - P. Kumar, P. Bajcsy, A. White, V. Mehra, D. Tcheng, D. Clutter, W.-W. Feng, P. Sinha, and R. Robertson, "Unraveling the Dominant Influences on the Evolution of Land-Surface Variables using Data Mining," in Proceedings of the 2nd NASA data Mining Workshop, 2006.
                  - S. Lee and P. Bajcsy, "Automated Feature-based Alignment for 3D Volume Reconstruction of CLSM Imagery," in Proceedings of SPIE Conference on Medical Imaging, 2006, vol. 1, no. 1, pp. 6144–105.
                  - P. Bajcsy, S. Lee, and D. Clutter, "Supporting Registration Decisions during 3D Medical Volume Reconstructions," in Proceedings of SPIE Conference on Medical Imaging, 2006, vol. 1, no. 1, pp. 6144–119.
                  - D. Clutter and P. Bajcsy, "Tradeoff Studies about Storage and Retrieval Efficiency of Boundary Data Representations for LLS , TIGER and DLG Data Structures," in Proceedings of the 2005 Symposium on Document Image Understanding Technology, 2005.
                  - P. Sinha, P. Kumar, I. Zaslavsky, D. Maidment, V. Mehra, and P. Bajcsy, "Web Service Enabled Data Mining Architecture for Digital Observatories," in Earth and Space Science Informatics, Eos Trans. AGU, 86(52), 2005, p. IN33A–1167.
                  - V. Mehra, P. Kumar, P. Bajcsy, W. W. Feng, D. Clutter, P. Sinha, D. Tcheng, and A. B. White, "Data Mining Architecture For The Analysis Of Remote Sensing Data," in Earth and Space Science Informatics, Eos Trans. AGU, 86(52), 2005, p. IN31A–1138.
                  - P. Bajcsy, "An Overview of Microarray Image Processing Requirements," in The IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2005), Proceedings of the Workshop on Computer Vision Methods for Bioinformatics (CVMB), 2005.
                  - R. Kooper, A. Shirk, S.-C. Lee, A. Lin, R. Folberg, and P. Bajcsy, "3D Volume Reconstruction Using Web Services," in Proceedings of the 3rd IEEE International Conference on Web Services (ICWS 2005), 2005, pp. 709–716.
                  - M. Urban and P. Bajcsy, "Fusion of Voice, Gesture, and Human-Computer Interface Controls for Remotely Operated Robot," in Proceedings of the Eighth International Conference on Information Fusion, 2005.
                  - D. J. Scherba and P. Bajcsy, "Depth Map Calibration by Stereo and Wireless Sensor Network Fusion," in The 8th International Conference on Information Fusion, 2005, no. 3, p. 8 pp.
                  - P. Bajcsy, R. Kooper, and D. Andersh, "Multi-Sensor Scene Modeling Using Statistical Models for Bidirectional Texture Functions," in Proceedings of SPIE on Defense and Security 2005, Conference: Algorithms for SAR Imagery XII, 2005, pp. vol. 5808–46, 28.
                  - S.-C. Lee and P. Bajcsy, "Feature Based Registration Of Fluorescent LSCM Imagery Using Region Centroids," in Proceedings of SPIE Conference on Medical Imaging, 2005, pp. 5747–128.
                  - Y.-J. Lee and P. Bajcsy, "An Information Gathering System For Medical Image Inspection," in Proceedings of SPIE Conference on Medical Imaging, 2005, pp. 5748–48.
                  - M. Urban, P. Bajcsy, R. Kooper, and J.-C. Lementec, "Recognition of arm gestures using multiple orientation sensors: repeatability assessment," in Proceedings of the 7th International IEEE Conference on Intelligent Transportation Systems, 2004, no. IEEE Cat. No.04TH8749, pp. 553–558.
                  - S.-C. Lee and P. Bajcsy, "Multisensor Raster and Vector Data Fusion Based on Uncertainty Modeling," in 2004 International Conference on Image Processing, 2004. ICIP'04., 2004, vol. 5, pp. 3355–3358.
                  - P. Bajcsy and S. Saha, "A New Thermal Infrared Camera Calibration Approach Using Wireless MEMS Sensors," in Proceedings of the Communication Networks And Distributed Systems Modeling And Simulation Conference (CNDS 2004), 2004.
                  - T. J. Alumbaugh and P. Bajcsy, "Map Mosaicking With Dissimilar Projections, Spatial Resolutions, Data Types and Number of Bands," in Proceedings of the ASPRS 2004 Annual Conference, 2004.
                  - R. Kooper, P. Bajcsy, and D. Andersh, "Methodology For Evaluating Statistically Predicted Versus Measured Imagery," in Proceedings of SPIE 2004, Algorithms for SAR Imagery XI,, 2004, pp. 5427–30.
                  - S. Saha and P. Bajcsy, "System Design Issues in Single-Hop Wireless Sensor Networks," in Proceedings of the 2nd IASTED International Conference on communications, Internet and information technology (CIIT), 2003, pp. 743–748.
                  - P. Groves and P. Bajcsy, "Methodology for Hyperspectral Band and Classification Model Selection," in IEEE Workshop on Advances in Techniques for Analysis of Remotely Sensed Data, 2003, pp. 120–128.
                  - P. Bajcsy and T. J. Alumbaugh, "Georeferencing Maps With Contours," in Proceedings of the 7th World Multiconference on Systemics, Cybernetics and Informatics (SCI 2003),, 2003.
                  - P. Bajcsy, "Automatic Extraction Of Isocontours From Historical Maps," in Proceedings of the 7th World Multiconference on Systemics, Cybernetics and Informatics (SCI 2003),, 2003, no. 2.
                  - P. Bajcsy and A. R. Chaudhuri, "Benefits of high resolution SAR for ATR of targets in proximity," in Proceedings of the 2002 IEEE Radar Conference, 2002, pp. 29–34.
                  - P. Bajcsy, "Metadata Information Generation," in Proceedings of NIMA/NSF Motion Imagery Workshop,, 2001.
                  - J. Bajcsy and P. Bajcsy, "Resulting Errors of Measurement Chains," in ISA/IEEE Proceedings on Sensor for Industry Conference, 2001, no. November, pp. 5–7.
                  - P. Bajcsy and N. Ahuja, "Hierarchical Texture Segmentation Using Dictionaries," in Proceedings of the 3rd ACCV'98, 1998, pp. 291–298.
                  - P. Bajcsy and N. Ahuja, "A New Framework for Hierarchical Segmentation Using Homogeneity Analysis'," in Proceedings of the First International Conference on Scale-Space Theory in Computer Vision, 1997, pp. 319–322.
                  - P. Bajcsy and N. Ahuja, "Hierarchical Image Segmentation Using Similarity Analysis," in Proc. Image Understanding Workshop, 1997, pp. 541–545.
                  - P. Bajcsy and N. Ahuja, "Uniformity and Homogeneity Based Hierarchical Clustering," in Proceedings of the 13th International Conference on Pattern Recognition, Vol. B, 1996, pp. 96–100.
                  - P. Bajcsy and N. Ahuja, "Segmentation of Multi-dimensional Images," in Proceedings on Image Understanding Workshop, Vol. II,, 1996, pp. 937–942.
                  - J. Bajcsy, P. Bajcsy, and J. Bajcsy, "Transformation of Curricula at Slovak Technical University," in Proceedings of the 7th International Conference on Modern Electrical and Magnetic Measurement, Part 1, 1995, pp. 284–288.
                  - L. Marini, P. Bajcsy, D. Bonnie, A. Vandecreme, R. Kooper, B. Long, M. Ondrejcek, P. K. Saba, J. Chalfoun, and K. McHenry, "Versus: A Framework for General Content-Based Comparisons," in The 8th IEEE International Conference on eScience (eScience 2012) (poster), 2012.
                  - J.-C. Lementec and P. Bajcsy, "Recognition of arm gestures using multiple orientation sensors: gesture classification," in Proceedings of the 7th International IEEE Conference on Intelligent Transportation Systems (IEEE Cat. No.04TH8749), 2004, pp. 965–970.
                  - P. Bajcsy, J. Chalfoun, and M. Brady, "How to Select Microscopy Image Similarity Metrics?" in ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), (poster), 2012.  

**More Recent Presentations ....**
> 
**2014**

> -  "To Measure or Not To Measure Terabyte-Sized Images?" NIST Software and Systems Division Seminar at ITL, January 27, 2014 (invited)
- "Re-Projection of Terabyte-sized 3D Images for Interactive Visualization," George Mason University (GMU), February 18, 2014, (invited), URL: http://cs.gmu.edu/~robotics/pmwiki.php/Main/GrandSeminar
- "To Measure or Not To Measure Terabyte-Sized Images?" NIST Biological Systems Division Seminar at MML, March 6, 2014 (invited)
- "Re-Projection of Terabyte-sized 3D Images for Interactive Visualization," University of Maryland, Baltimore County (UMBC), March 10, 2014, (invited)
- "Interactive Measurements of Terabyte-sized 3D Images," the Frontiers of Visualization, The Federal Networking and Information Technology Research and Development (NITRD) Program, the Human Computer Interaction & Information Management Coordinating Group (HCI&IM CG), NSF, May 2nd, 2014 (invited)
- "To Measure or Not To Measure Terabyte-Sized Images?", the Second ASE International Conference on Big Data Science and Computing, International Workshop on Enabling Science from Big Image Data, Stanford University, May 27, 2014 (workshop)
- "Interactive Measurements of Terabyte-sized 3D Images," Computer Science Department, University of California at Berkeley, May 28, 2014 (invited)
- "Digital Image Comparison," ITL Science Day, NIST Gaithersburg, October 1, 2014 (invited)
- "To Measure or Not To Measure Terabyte-Sized Images?" 2014 Bioimage informatics annual meeting, Leuven, Belgium, October 8-10, 2014 (conference); URL http://www.vibconferences.be/event/bioimage-informatics
- "Measurement Science Based on Full Coverage Microscopic Measurements" UMD GPU Summit, October 27, 2014 (invited - panel); URL: http://www.umiacs.umd.edu/GPUsummit/
- "To Measure or Not To Measure Terabyte-Sized Images?" UIC Bioengineering Seminar, November 7, 2014 (invited); URL: https://www.cs.uic.edu/bin/view/BIOE/BioeSeminars 

> **2013**

                   "System biology: Technologies and standards for stem cells and mammalian cell engineering," OSTP, July 29, 2013, (invited)
 "Fast multi-view visualization and sampling of terabyte-sized 3D volumes"; Meeting on Data to Decisions (D2D), the Institute for Defense Analyses (IDA), September 18, 2013, (invited).
 "Stem Cell Imaging: Toward Full Coverage Characterization of Stem Cell Colonies"; Annual Stem Cell and Regenerative Medicine Program from the combined UIUC and UIC campuses, UIC, September 20, 2013, 
http://tigger.uic.edu/depts/ovcr/research/stemcell/events/2013/index.ht...
, (invited).
 "From Terabyte-Sized Stem Cell Images to Knowledge," University of Maryland at College Park, December 4, 2013. 
 "The Role of Big Image Data in Stem Cell Therapy," University of Maryland, Baltimore County, Multicore Computational Center Advisory Board Meeting, December 16, 2013. 
 "Big Image Data Visualization for Decision Support," Human Computer Interaction and Information Management (HCI & IM) Coordinating Group, The Networking and Information Technology Research and Development (NITRD) Program, December 18th, 2013.

**2012**
                   "Understanding Software-Based Measurements in Biological Metrology," NCSA/UIUC guest lecture, Urbana, IL, April 4, 2012 (invited).
 "Stem cell imaging: accuracy and uncertainty of stem cell image analyses"; Annual Stem Cell and Regenerative Medicine Program from the combined UIUC and UIC campuses, UIC, May 10, 2012, 
http://tigger.uic.edu/depts/ovcr/research/stemcell/events/2012/index.ht...
, (invited).
 "Toward a Recommendation System for Image Similarity Metrics," The 2nd IASTED International Symposia Imaging and Signal Processing in Health Care and Technology (ISPHT 2012), Johns Hopkins University, Baltimore, May 14,2012, (conference).
 "Accuracy and Uncertainty of Image Analyses,", Workshop on NIST policy on the evaluation and expression of measurement uncertainty, NIST, Gaithersburg, MD, May 15–16, 2012;
http://physics.nist.gov/cuu/Uncertainty/bibliography.html
 (invited).
 "How to compare microscopy images?", Janelia Farm Research guest lecture, Howard Hughes Medical Institute, Ashburn, VA, May 21, 2012 
http://www.janelia.org/
, (invited).
 "Grand Challenges of Measurement Science with Big Data," Big Data Workshop, NIST, Gaithersburg, MD, June 13-14, 2012, (invited), 
http://www.nist.gov/itl/ssd/is/big-data.cfm
 "Measurements of Image Proximity: How and Where?" Laboratory for Computational Sensing and Robotics (LCSR) seminar, The Johns Hopkins University, November 7, 2012, 
https://www.lcsr.jhu.edu/LCSR_CISST_Seminars
, (invited)

**2011:**
                  - NSF Workshop on Pervasive Computing at Scale, "Inexpensive and mobile tele-immersive environments for everybody (TEEVE)," by Peter Bajcsy, Kenton McHenry and Rob Kooper, January 27-28, 2011, Seattle, WA,  http://sensorlab.cs.dartmouth.edu/NSFPervasiveComputingAtScale/ (accepted 57 out of the 229 papers)  
                  - Interagency Training for Rule of Law Deployments, "The Rule of Law Continuous Knowledge Management Repository, "American Bar Association, Washington DC, February 7-9, 2011.  
                  - Clemson University seminar, "Simplicity and Complexity of Digital Content Comparison," February 23, 2011, Clemson, South Carolina,  
                  - The NARA Assembly sponsors "A Conversation with three NARA Applied Research Partners," a panel of experts to address the applied R&D for the Archives, NARA College Park, Archives II, May 5, 2011  
                  - Mid-Atlantic Regional Archives Conference (MARAC), "Electronic File Format Conversion Services in a Computer Cloud," Panels on New Tools to Address Electronic Records Challenges, Alexandria, Washington DC, May 6, 2011.

**2010**
                  US workshop on roadmap development for Digital Preservation Interoperability Framework, March 29-31, 2010, NIST Gaithersburg, MD, 
http://ddp.nist.gov/workshop/program.php
;
NARA Archives 2 at College Park, April 1st, 2010;
Yahoo! at Champaign, IL, April 2nd, 2010;
The Advanced Research and Technology Collaboratory for the Americas (ARTCA) working session, March 12th, 2010;
The Archives of American Art, March 17th, 2010;
National Academy of Sciences; The committee on Computing Research for Environmental and Societal Sustainability, May 26th, 2010;
The IARPA workshop, University of Maryland, June 2-3, 2010;
Institutes for Advanced Topics in the Digital Humanities (IATDH) workshop, June 15-16, NCSA Access grid meeting in DC;
3D Volume Reconstruction from Microscope Imagery: Automation and Medical Community Infrastructure Support, NIST, July 14, 2010;
Exploiting Imaging and Web Technologies to Provide a Comprehensive View of Census Data, 1940 US Census Workshop, College Park, MD, September 13, 2010;
presentation at Wolfram Technology conference in IL; October 13, 2010, 
http://www.wolfram.com/events/techconf2010/
;
presentations at Imaging at Illinois workshop in IL, October 14-15, 2010, 
http://www.imaging.beckman.illinois.edu/imaging2010/
;
presentation at the Workshop on Digital Preservation of Complex Engineering Data in WV, October 20-22, 2010;
presentation at the Gordon Challenge in Data-Intensive Discovery conference in CA, October 26-29, 2010, 
http://www.sdsc.edu/gordongrandchallenge/
;
Supercomputing Conference 2010, NSF funded panel on supercomputing in humanities, New Orleans, Louisiana , November 14-16, 2010; 
http://sc10.supercomputing.org/schedule/event_detail.php?evid=stpan108
Department of Defense (DoD)/Manufacturing Systems Integration Division (MSID) Summit on Model-Based Enterprise (MBE), Technical Data Package and Configuration Management, December 13-16, 2010, NIST Gaithersburg, MD.    

## Community Services

                  -  served on NSF Review Panels for Division of Informative Biology and Division of Information & Intelligent Systems, 2004 (twice), 2005 (twice), 2009 (once), 2010 (three times), 2011 (once), Big Data 2012 (once), DIBBS 2013 (once), DIBBS 2015 (once). 
                  -  served on the NIST advisory board for the SHIELD project 2003-2004, andNIST Advanced Material Centers 2013,
                  -  served as a reviewer for the U.S. Civilian Research and Development Foundation (CRDF) 2006 & 2008, 
                  -  served as a reviewer for the Science Center programs of the U.S. Department of State 2008.
                  -  served as a reviewer for the National Research Council of the National Academies 2011.
                  -  served as a reviewer for the US Federal Highway Administration (Turner-Fairbank Highway Research Center) 2013.
                  -  served as an associate editor for the ACM Transactions on Multimedia Computing Communications and Applications 2010, 
                  -  served as a program committee member on the IEEE Workshop on Computer Vision Methods for Bioinformatics, San Diego, June 2005 (in conjunctions with IEEE CVPR 2005), on the Workshop on Mining Engineering and Scientific Datasets (in conjunction with the 2006 SIAM conference), and on the International Conference on Machine Learning and Applications (ICMLA'07 & 08 & 09), 
                  -  served as a member and reviewer on the Technical Advisory Committee of the First International Conference on Intelligent Interactive Technologies and Multimedia, Dec 28-30, 2010 Allahabad, India, http://iitm.iiita.ac.in/
                  -  organized an international workshop on Enabling Science for Big Image Data in conjunction with the 2nd IEEE/ASE International Conference on BigData at Stanford University, May 27, 2014, http://www.scienceengineering.org/ase/conference/2014/bigdata/sanjose/website/workshop-5/
                  - served as a chair of an international conference on BioImage Informatics at NIST, Gaithersburg, MD, October 14-16,2015, http://nist.gov/itl/ssd/is/bioimage-conference-2015.cfm

##  Teaching Experience

**Courses and Workshops:**
                  - ECE 290 Logic and Computer Design Fundamentals course at UIUC, Fall 2009 (~130 students)
                  - A workshop on Geospatial Informatics at the Illinois GIS Association (ILGISA) conference held in Champaign-Urbana, IL on April 28-29th, 2009, URL:  http://www.ilgisa.org/images/Conference/ILGISA%20conf%20broch%20Spring09.pdf
                  - High Performance Computing in the Humanities, Arts, and Social Sciences: Information-Rich Environments for Research and Teaching, July 28, 2008
                  - August 2, 2008, three lectures,  http://www.chass.uiuc.edu/Events/Entries/2008/7/27_High_Performance_Computing_in_the_Humanities%2C_Arts%2C_and_Social_Sciences%3A_Information-Rich_Environments_for_Research_and_Teaching.html
                  - Land-informatics workshop, 7-8 & 28-29 of Sept., 2007, three lectures. 
                  - Computational Methods in the Humanities, Arts, and Social Sciences Workshop, August 2007,  http://www.sc-education.org/wiki/index.php/UCIHRI07#Schedule
                  - CEE498HI Hydroinformatics course, taught one fourth of the course.  
                  - CSBHL Bioinformatics seminar, led the seminar course jointly with a biologist, Spring 2003
                  - CS491JH Bioinformatics seminar, led the seminar course jointly with a biologist, Spring 2002.   

### Guest Lectures:

                  - Bio-medical image processing: Department of Statistics seminar at UIUC, Fall 2010.
                  - Tele-immersive environments: Computer Graphics seminar in Computer Science Department at UIUC, Fall 2010.
                  - Introduction to Advanced Computing in Humanities, Arts, and Social Science: Afro498/598 at UIUC, Spring 2009.
                  - Mining microarray data: Bioinformatics Seminar CS591-HLZ at UIUC, Fall 2005, (see course description at  http://ilabs.inquiry.uiuc.edu/ilab/biosem )
                  - Quality control of cDNA microarray images: Bioinformatics Seminar CS591-HLZ at UIUC, Spring 2005, (see course description at  http://ilabs.inquiry.uiuc.edu/ilab/biosem )
                  - Microarray image analyses: Bioinfomatics seminar ANSCI490 at UIUC, Fall 2002. 

ChemistryInformation technologyBiometricsImage and signal processingImage and signal processing

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