##### Table of Contents





UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

WASHINGTON, D.C. 20549

FORM 10-Q

(Mark One)

|þ | QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
|- | ---------------------------------------------------------------------------------------

For the quarterly period ended June 27, 2009

OR



| ̈ | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
|- | ----------------------------------------------------------------------------------------

For the transition period from  to

Commission File Number 000-17157

NOVELLUS SYSTEMS, INC.

(Exact
name of Registrant as specified in its charter)





|                                                               |  |                                        
|-------------------------------------------------------------- |  | ---------------------------------------
|California                                                     |  | 77-0024666                             
|(State or other jurisdiction of incorporation of organization) |  | (I.R.S. Employer Identification Number)
|                                                               | 
|4000 North First Street San Jose, California                   |  | 95134                                  
|(Address of principal executive offices)                       |  | (Zip code)                             

(408) 943-9700

(Registrants telephone number, including area code)

Indicate by check mark whether the registrant
(1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and
(2) has been subject to such filing requirements for the past 90 days.    Yes  þ    No   ̈

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Website, if any, every Interactive Data File required to be
submitted and posted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such
files).    Yes   ̈    No   ̈

Indicate by check mark whether the Registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of large accelerated filer, accelerated
filer and smaller reporting company in Rule 12b-2 of the Exchange Act. (Check one):



|                           |  |                      |  |                                               |  |                             
|-------------------------- |  | -------------------- |  | --------------------------------------------- |  | ----------------------------
|Large accelerated filer  þ |  | Accelerated filer   ̈ |  | Non-accelerated filer   ̈                      |  | Smaller reporting company   ̈
|                           |  |                      |  | (Do not check if a smaller reporting company) | 

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange
Act).    Yes   ̈    No  þ

As of July 27, 2009, there were 97,586,405 shares of the Registrants common stock, no par value, issued and outstanding.









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##### Table of Contents

NOVELLUS SYSTEMS, INC.

FORM 10-Q

QUARTER ENDED June 27, 2009

TABLE OF CONTENTS



|                              |  |                                                                                                                    |  |     
|----------------------------- |  | ------------------------------------------------------------------------------------------------------------------ |  | ----
|                              |  |                                                                                                                    |  | Page
|Part I: Financial Information |  |                                                                                                                   
|Item 1:                       |  | Condensed Consolidated Financial Statements                                                                        |  | 3   
|                              |  | Condensed Consolidated Statements of Operations for the three and six months ended June 27, 2009 and June 28, 2008 |  | 3   
|                              |  | Condensed Consolidated Balance Sheets as of June 27, 2009 and December 31, 2008                                    |  | 4   
|                              |  | Condensed Consolidated Statements of Cash Flows for the six months ended June 27, 2009 and June 28,
2008           |  | 5   
|                              |  | Notes to Condensed Consolidated Financial Statements                                                               |  | 6   
|Item 2:                       |  | Managements Discussion and Analysis of Financial Condition and Results of Operations                              |  | 22  
|Item 3:                       |  | Quantitative and Qualitative Disclosures About Market Risk                                                         |  | 30  
|Item 4:                       |  | Controls and Procedures                                                                                            |  | 30  
|Part II: Other Information    |  |                                                                                                                   
|Item 1:                       |  | Legal Proceedings                                                                                                  |  | 31  
|Item 1A:                      |  | Risk Factors                                                                                                       |  | 31  
|Item 2:                       |  | Unregistered Sales of Equity Securities and Use of Proceeds                                                        |  | 39  
|Item 4:                       |  | Submission of Matters to a Vote of Security Holders                                                                |  | 39  
|Item 6:                       |  | Exhibits                                                                                                           |  | 40  
|Signatures                    |  | 41                                                                                                                
|EXHIBIT 10.4                  |  |                                                                                                                   
|EXHIBIT 10.9                  |  |                                                                                                                   
|EXHIBIT 10.27                 |  |                                                                                                                   
|EXHIBIT 10.28                 |  |                                                                                                                   
|EXHIBIT 31.1                  |  |                                                                                                                   
|EXHIBIT 31.2                  |  |                                                                                                                   
|EXHIBIT 32.1                  |  |                                                                                                                   
|EXHIBIT 32.2                  |  |                                                                                                                   



2



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##### Table of Contents

PART I: FINANCIAL INFORMATION



|ITEM 1: | CONDENSED CONSOLIDATED FINANCIAL STATEMENTS
|------- | -------------------------------------------

NOVELLUS SYSTEMS, INC.

CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS

(Unaudited)



|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|--------------------------------------------- |  | ---------------------------------------- | ------- | - | ---------------- | - | ------- | ---------------- |  | - | ---------------- | - |  | - | -------
|                                              |  | Three Months Ended                       |         |   | Six Months Ended
|                                              |  | June 27,    2009                         |         |   | June 28,    2008 |   |         | June 27,    2009 |  |   | June 28,    2008
|                                              |  | (In thousands, except per share amounts)
|Net sales                                     |  | $                                        | 119,208 |   |                  | $ | 257,740 |                  |  | $ | 218,121          |   |  | $ | 572,453
|Cost of sales                                 |  |                                          | 88,202  |   |                  |   | 146,777 |                  |  |   | 161,377          |   |  |   | 316,550
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Gross profit                                  |  |                                          | 31,006  |   |                  |   | 110,963 |                  |  |   | 56,744           |   |  |   | 255,903
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|                                              |  |                                          |         |  
|Selling, general and administrative           |  |                                          | 46,128  |   |                  |   | 61,488  |                  |  |   | 88,917           |   |  |   | 121,817
|Research and development                      |  |                                          | 39,341  |   |                  |   | 59,815  |                  |  |   | 75,356           |   |  |   | 117,155
|Restructuring charges                         |  |                                          | 2,921   |   |                  |   | 1,042   |                  |  |   | 3,234            |   |  |   | 1,042  
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Total operating expenses                      |  |                                          | 88,390  |   |                  |   | 122,345 |                  |  |   | 167,507          |   |  |   | 240,014
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|                                              |  |                                          |         |  
|Operating income (loss)                       |  |                                          | (57,384 | ) |                  |   | (11,382 | )                |  |   | (110,763         | ) |  |   | 15,889 
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|                                              |  |                                          |         |  
|Interest income, net                          |  |                                          | 2,307   |   |                  |   | 2,277   |                  |  |   | 4,366            |   |  |   | 5,079  
|Other income (expense), net                   |  |                                          | 599     |   |                  |   | 2,639   |                  |  |   | (164             | ) |  |   | 946    
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Interest and other income, net                |  |                                          | 2,906   |   |                  |   | 4,916   |                  |  |   | 4,202            |   |  |   | 6,025  
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|                                              |  |                                          |         |  
|Income (loss) before income taxes             |  |                                          | (54,478 | ) |                  |   | (6,466  | )                |  |   | (106,561         | ) |  |   | 21,914 
|                                              |  |                                          |         |  
|Provision for (benefit from) income taxes     |  |                                          | (4,470  | ) |                  |   | (4,081  | )                |  |   | 9,839            |   |  |   | 8,770  
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|                                              |  |                                          |         |  
|Net income (loss)                             |  | $                                        | (50,008 | ) |                  | $ | (2,385  | )                |  | $ | (116,400         | ) |  | $ | 13,144 
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|                                              |  |                                          |         |  
|Net income (loss) per share:                  |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Basic                                         |  | $                                        | (0.52   | ) |                  | $ | (0.02   | )                |  | $ | (1.21            | ) |  | $ | 0.13   
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Diluted                                       |  | $                                        | (0.52   | ) |                  | $ | (0.02   | )                |  | $ | (1.21            | ) |  | $ | 0.13   
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Shares used in basic per share calculations   |  |                                          | 96,472  |   |                  |   | 98,202  |                  |  |   | 96,336           |   |  |   | 99,429 
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        
|Shares used in diluted per share calculations |  |                                          | 96,472  |   |                  |   | 98,202  |                  |  |   | 96,336           |   |  |   | 100,131
|                                              |  |                                          |         |   |                  |   |         |                  |  |   |                  |   |  |   |        

See accompanying Notes to Condensed Consolidated Financial Statements.



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NOVELLUS SYSTEMS, INC.

CONDENSED CONSOLIDATED BALANCE SHEETS



|                                                                                                 |  |                  |           |   |                   |   |           |  
|------------------------------------------------------------------------------------------------ |  | ---------------- | --------- | - | ----------------- | - | --------- | -
|                                                                                                 |  | June 27,    2009 |           |   | December 31, 2008 |  
|                                                                                                 |  | (Unaudited)      |           |   |                   |  
|                                                                                                 |  | (In thousands)   |          
|ASSETS                                                                                           |  |                  |           |   |                   |   |           |  
|Current assets:                                                                                  |  |                  |           |   |                   |   |           |  
|Cash and cash equivalents                                                                        |  | $                | 190,698   |   |                   | $ | 184,332   |  
|Short-term investments                                                                           |  |                  | 285,600   |   |                   |   | 286,556   |  
|Accounts receivable, net                                                                         |  |                  | 96,314    |   |                   |   | 144,330   |  
|Inventories                                                                                      |  |                  | 163,718   |   |                   |   | 213,305   |  
|Deferred tax assets, net                                                                         |  |                  | 38,223    |   |                   |   | 44,051    |  
|Restricted cash and cash equivalents                                                             |  |                  |          |   |                   |   | 116,819   |  
|Prepaid and other current assets                                                                 |  |                  | 32,187    |   |                   |   | 53,209    |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Total current assets                                                                             |  |                  | 806,740   |   |                   |   | 1,042,602 |  
|Property and equipment, net of accumulated depreciation of $601,367 in 2009 and $582,157 in 2008 |  |                  | 256,576   |   |                   |   | 271,866   |  
|Non-current restricted cash and cash equivalents                                                 |  |                  | 137,792   |   |                   |   | 2,883     |  
|Long-term investments                                                                            |  |                  | 85,615    |   |                   |   | 91,873    |  
|Goodwill                                                                                         |  |                  | 125,980   |   |                   |   | 126,073   |  
|Intangible and other assets                                                                      |  |                  | 88,713    |   |                   |   | 102,230   |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Total assets                                                                                     |  | $                | 1,501,416 |   |                   | $ | 1,637,527 |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|LIABILITIES AND SHAREHOLDERS EQUITY                                                             |  |                  |           |   |                   |   |           |  
|Current liabilities:                                                                             |  |                  |           |   |                   |   |           |  
|Accounts payable                                                                                 |  | $                | 44,530    |   |                   | $ | 50,832    |  
|Accrued payroll and related expenses                                                             |  |                  | 27,845    |   |                   |   | 35,907    |  
|Accrued warranty                                                                                 |  |                  | 15,805    |   |                   |   | 25,732    |  
|Other accrued liabilities                                                                        |  |                  | 36,707    |   |                   |   | 47,533    |  
|Income taxes payable                                                                             |  |                  | 14,314    |   |                   |   | 17,527    |  
|Deferred profit                                                                                  |  |                  | 13,267    |   |                   |   | 14,784    |  
|Current debt obligations                                                                         |  |                  | 1,859     |   |                   |   | 112,907   |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Total current liabilities                                                                        |  |                  | 154,327   |   |                   |   | 305,222   |  
|Long-term debt obligations                                                                       |  |                  | 111,221   |   |                   |   |          |  
|Long-term income taxes payable                                                                   |  |                  | 30,145    |   |                   |   | 29,778    |  
|Other non-current liabilities                                                                    |  |                  | 48,050    |   |                   |   | 55,745    |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Total liabilities                                                                                |  |                  | 343,743   |   |                   |   | 390,745   |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Commitments and contingencies                                                                    |  |                  |           |   |                   |   |           |  
|Shareholders equity:                                                                            |  |                  |           |   |                   |   |           |  
|Common stock                                                                                     |  |                  | 1,179,877 |   |                   |   | 1,158,637 |  
|Retained earnings (accumulated deficit)                                                          |  |                  | (13,557   | ) |                   |   | 99,981    |  
|Accumulated other comprehensive loss                                                             |  |                  | (8,647    | ) |                   |   | (11,836   | )
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Total shareholders equity                                                                       |  |                  | 1,157,673 |   |                   |   | 1,246,782 |  
|                                                                                                 |  |                  |           |   |                   |   |           |  
|Total liabilities and shareholders equity                                                       |  | $                | 1,501,416 |   |                   | $ | 1,637,527 |  
|                                                                                                 |  |                  |           |   |                   |   |           |  

See accompanying Notes to Condensed Consolidated Financial Statements.



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NOVELLUS SYSTEMS, INC.

CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS

(Unaudited)



|                                                                                         |  |                  |          |   |                  |   |          |  
|---------------------------------------------------------------------------------------- |  | ---------------- | -------- | - | ---------------- | - | -------- | -
|                                                                                         |  | Six Months Ended |         
|                                                                                         |  | June 27,    2009 |          |   | June 28,    2008 |  
|                                                                                         |  | (In thousands)   |         
|Cash flows from operating activities:                                                    |  |                  |          |   |                  |   |          |  
|Net income (loss)                                                                        |  | $                | (116,400 | ) |                  | $ | 13,144   |  
|Adjustments to reconcile net income (loss) to net cash provided by operating activities: |  |                  |          |   |                  |   |          |  
|Loss on disposal of property and equipment, net                                          |  |                  | 64       |   |                  |   | 2,138    |  
|Depreciation and amortization                                                            |  |                  | 23,954   |   |                  |   | 32,923   |  
|Deferred income taxes                                                                    |  |                  | 11,219   |   |                  |   | 10,010   |  
|Stock-based compensation                                                                 |  |                  | 16,180   |   |                  |   | 16,897   |  
|Excess tax benefit from stock-based compensation                                         |  |                  |         |   |                  |   | (56      | )
|Other-than-temporary impairment of investments                                           |  |                  |         |   |                  |   | 737      |  
|Other non-cash adjustments, net                                                          |  |                  | 2,820    |   |                  |   | 1,259    |  
|Changes in operating assets and liabilities:                                             |  |                  |          |   |                  |   |          |  
|Accounts receivable, net                                                                 |  |                  | 47,490   |   |                  |   | 131,287  |  
|Inventories                                                                              |  |                  | 49,418   |   |                  |   | 4,913    |  
|Prepaid and other assets                                                                 |  |                  | 20,670   |   |                  |   | (5,399   | )
|Accounts payable                                                                         |  |                  | (5,955   | ) |                  |   | (23,624  | )
|Accrued payroll and related expenses                                                     |  |                  | (4,479   | ) |                  |   | (24,666  | )
|Accrued warranty                                                                         |  |                  | (12,136  | ) |                  |   | (13,795  | )
|Income taxes payable                                                                     |  |                  | (2,794   | ) |                  |   | (2,480   | )
|Deferred profit                                                                          |  |                  | (1,136   | ) |                  |   | (11,613  | )
|Other liabilities                                                                        |  |                  | (10,460  | ) |                  |   | (6,501   | )
|                                                                                         |  |                  |          |   |                  |   |          |  
|Net cash provided by operating activities                                                |  |                  | 18,455   |   |                  |   | 125,174  |  
|                                                                                         |  |                  |          |   |                  |   |          |  
|Cash flows from investing activities:                                                    |  |                  |          |   |                  |   |          |  
|Proceeds from sales of investments                                                       |  |                  | 142,234  |   |                  |   | 285,950  |  
|Proceeds from maturities of investments                                                  |  |                  | 9,436    |   |                  |   | 69,410   |  
|Purchases of investments                                                                 |  |                  | (141,637 | ) |                  |   | (290,323 | )
|Capital expenditures                                                                     |  |                  | (7,396   | ) |                  |   | (10,936  | )
|Increase in restricted cash and cash equivalents                                         |  |                  | (18,090  | ) |                  |   | (8,816   | )
|Purchase of intangible assets                                                            |  |                  | (2,000   | ) |                  |   |         |  
|Proceeds from the sale of property and equipment                                         |  |                  | 1,267    |   |                  |   |         |  
|                                                                                         |  |                  |          |   |                  |   |          |  
|Net cash provided by (used in) investing activities                                      |  |                  | (16,186  | ) |                  |   | 45,285   |  
|                                                                                         |  |                  |          |   |                  |   |          |  
|Cash flows from financing activities:                                                    |  |                  |          |   |                  |   |          |  
|Proceeds from employee stock compensation plans                                          |  |                  | 4,328    |   |                  |   | 5,699    |  
|Proceeds from debt obligations                                                           |  |                  | 110,632  |   |                  |   |         |  
|Repayment of debt obligations                                                            |  |                  | (110,608 | ) |                  |   |         |  
|Proceeds from (repayments of) lines of credit, net                                       |  |                  | 709      |   |                  |   | (36      | )
|Repurchases of common stock                                                              |  |                  | (1,899   | ) |                  |   | (160,153 | )
|Excess tax benefit from stock-based compensation                                         |  |                  |         |   |                  |   | 56       |  
|                                                                                         |  |                  |          |   |                  |   |          |  
|Net cash provided by (used in) financing activities                                      |  |                  | 3,162    |   |                  |   | (154,434 | )
|                                                                                         |  |                  |          |   |                  |   |          |  
|Effects of exchange rate changes on cash and cash equivalents                            |  |                  | 935      |   |                  |   | 677      |  
|                                                                                         |  |                  |          |   |                  |   |          |  
|Net increase in cash and cash equivalents                                                |  |                  | 6,366    |   |                  |   | 16,702   |  
|Cash and cash equivalents at the beginning of the period                                 |  |                  | 184,332  |   |                  |   | 175,071  |  
|                                                                                         |  |                  |          |   |                  |   |          |  
|Cash and cash equivalents at the end of the period                                       |  | $                | 190,698  |   |                  | $ | 191,773  |  
|                                                                                         |  |                  |          |   |                  |   |          |  

See accompanying Notes to Condensed Consolidated Financial Statements.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)

Note 1. Summary of Significant Accounting Policies

Basis of Presentation

The accompanying Condensed Consolidated
Financial Statements have been prepared in accordance with U.S. generally accepted accounting principles (U.S. GAAP) for interim financial information and with the instructions to the Quarterly Report on Form 10-Q with Article 10 of Regulation S-X.
The interim financial information is unaudited and does not include all of the information and footnotes required by U.S. GAAP for complete financial statements. In the opinion of management, all adjustments (consisting of normal recurring
adjustments) considered necessary for a fair presentation have been included. Operating results for the three and six months ended June 27, 2009 are not necessarily indicative of the results that may be expected for the year ending
December 31, 2009 or any future period. The interim financial statements should be read in conjunction with the Consolidated Financial Statements and footnotes thereto included in our Annual Report on Form 10-K for the year ended
December 31, 2008.

The preparation of financial statements in conformity with U.S. GAAP requires us to make estimates and judgments that affect the
reported amounts of assets, liabilities, revenues and expenses and the related disclosures of contingent assets and liabilities. We evaluate estimates on an ongoing basis, including those related to recognition of revenue, valuation of inventory,
valuation of goodwill and other intangible assets, valuation of deferred tax assets, adequacy of warranty obligations, measurement of restructuring and impairment charges, compliance with hedge accounting for derivatives, measurement of stock-based
compensation expense, valuation of investments, adequacy of the allowance for doubtful accounts and adequacy of loss contingencies including those related to legal matters. When market data is not readily available, we base estimates on historical
experience, market-based assumptions and other unobservable data that we believe to be reasonable under current circumstances. Such estimates form the basis for our judgments about the carrying values of assets and liabilities when those carrying
values are not apparent from other sources. Our intent is to accurately state assets and liabilities given facts known at the time of measurement. Actual results may differ from our estimates under different assumptions or conditions.

The accompanying Condensed Consolidated Financial Statements include our accounts and the accounts of our subsidiaries after the elimination of all significant
intercompany account balances and transactions. Certain prior year amounts in the Condensed Consolidated Statements of Cash Flows have been reclassified to conform to the current year presentation. These reclassifications did not affect previously
reported net cash provided by or used in operating, investing or financing activities.

We have evaluated subsequent events through July 31, 2009, the
issuance date of our financial statements.

Recent Accounting Pronouncements

In September 2006, the Financial Accounting Standards Board (FASB) issued Statement of Financial Accounting Standards (SFAS) No. 157, Fair Value Measurements (SFAS 157), which establishes specific
criteria for the fair value measurements of financial and nonfinancial assets and liabilities that are already subject to fair value under current accounting rules. SFAS 157 also requires expanded disclosures related to fair value measurements. As
permitted under FASB Staff Position (FSP) of Financial Accounting Standards (FAS) 157-2 (FSP 157-2), we elected a one-year delay in applying SFAS 157 to certain fair value measurements of non-financial instruments, except for those measured at fair
value on at least an annual basis. We fully adopted SFAS 157 on January 1, 2009. See Note 4 for information about fair value measurements.

In
December 2007, the FASB issued SFAS No. 141 (revised 2007), Business Combinations as amended by FSP FAS 141(R)-1, Accounting for Assets Acquired and Liabilities Assumed in a Business Combination That Arise from
Contingencies (SFAS 141R). Under SFAS 141R, an entity is generally required to recognize the assets acquired, liabilities assumed, contractual contingencies, and contingent consideration at their fair value on the acquisition date. In
circumstances where the acquisition-date fair value for a contingency cannot be determined during the measurement period, a contingency is recognized as of the acquisition date based on the estimated amount if it is probable that an asset or
liability exists as of the acquisition date and the amount can be reasonably estimated. It further requires acquisition-related costs to be recognized separately from the acquisition and expensed as incurred, restructuring costs to be expensed in
periods subsequent to the acquisition date, and changes in accounting for deferred tax asset valuation allowances and acquired income tax uncertainties after the measurement period to impact the provision for income taxes. In addition, acquired
in-process research and development is capitalized as an intangible asset and amortized over its estimated useful life. We adopted SFAS 141R on January 1, 2009. We did not complete any business combinations during the six months ended
June 27, 2009.

In December 2007, the FASB issued SFAS No. 160, Noncontrolling Interests in Consolidated Financial Statementsan
amendment of Accounting Research Bulletin No. 51 (SFAS 160), which establishes accounting and reporting standards for ownership interests in subsidiaries held by parties other than the parent, the amount of consolidated net income
attributable to the parent and to the noncontrolling interest, changes in a parents ownership interest, and the valuation of retained noncontrolling equity investments



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



when a subsidiary is deconsolidated. SFAS 160 also establishes disclosure requirements that clearly identify and distinguish between the interests of
the parent and the interests of the noncontrolling owners. SFAS 160 is effective for fiscal years beginning after December 15, 2008. We adopted SFAS 160 on January 1, 2009. The adoption did not have an impact on our Condensed
Consolidated Financial Statements as all of our subsidiaries are wholly owned.

In March 2008, the FASB issued SFAS No. 161, Disclosures about
Derivative Instruments and Hedging Activitiesan amendment of FASB Statement No. 133 (SFAS 161), which requires enhanced disclosures about an entitys derivative and hedging activities. SFAS 161 is effective for fiscal
years beginning after November 15, 2008. We adopted SFAS 161 on January 1, 2009. See Note 5 for the disclosures required by SFAS 161.

In April
2008, the FASB issued FSP FAS 142-3, Determination of the Useful Life of Intangible Assets (FSP 142-3). This FSP provides guidance with respect to estimating the useful lives of recognized intangible assets acquired on or after the
effective date and requires additional disclosure related to the renewal or extension of the terms of recognized intangible assets. FSP 142-3 is effective for fiscal years and interim periods beginning after December 15, 2008. We adopted FSP
142-3 on January 1, 2009. The adoption did not have an impact on our Condensed Consolidated Financial Statements.

In December 2008, the FASB issued
FSP FAS 132(R)-1, Employers Disclosures about Postretirement Benefit Plan Assets (FSP 132R-1). This FSP requires additional disclosures for plan assets of defined benefit pension or other postretirement plans. The required
disclosures include a description of our investment policies and strategies, the fair value of each major category of plan assets, the inputs and valuation techniques used to measure the fair value of plan assets, the effect of fair value
measurements using significant unobservable inputs on changes in plan assets and the significant concentrations of risk within plan assets. FSP 132R-1 does not change the accounting treatment for postretirement benefit plans. FSP 132R-1 is effective
for fiscal years ending after December 15, 2009.

In April 2009, the FASB issued FSP FAS 107-1 and APB 28-1 Interim Disclosures about Fair Value
of Financial Instruments (FSP 107-1). This FSP requires interim disclosures regarding the fair values of financial instruments that are within the scope of SFAS 107, Disclosures about the Fair Value of Financial Instruments.
Additionally, this FSP requires disclosure of the methods and significant assumptions used to estimate the fair value of financial instruments on an interim basis as well as changes in those methods and significant assumptions from prior periods.
FSP 107-1 does not change the accounting treatment for these financial instruments and is effective for interim reporting periods ending after June 15, 2009. We adopted FSP 107-1 on March 29, 2009. See Note 4 for the disclosures required
by FSP 107-1.

In April 2009, the FASB issued FSP FAS 115-2 and FSP FAS 124-2 Recognition and Presentation of Other-Than-Temporary Impairments
(FSP 115-2). This FSP amends the requirements for the recognition and measurement of other-than-temporary impairments for debt securities by modifying the pre-existing intent and ability indicator. Under FSP 115-2, for impaired debt
securities, an other-than-temporary impairment is triggered when there is an intent to sell the security, it is more likely than not that the security will be required to be sold before recovery, or the security is not expected to recover the entire
amortized cost basis of the security. Additionally, FSP 115-2 changes the presentation of other-than-temporary impairments in the income statement for those impairments attributed to credit losses. FSP 115-2 is effective for interim and annual
reporting periods ending after June 15, 2009. We adopted FSP 115-2 on March 29, 2009. As a result, we recorded an adjustment of $3.5 million to increase beginning retained earnings and accumulated other comprehensive loss. See Note 3 for
the disclosures required by FSP 115-2.

In April 2009, the FASB issued FSP FAS 157-4 Determining Fair Value When the Volume and Level of Activity for
the Asset or Liability Have Significantly Decreased and Identifying Transactions That Are Not Orderly (FSP 157-4). This FSP provides additional guidance for estimating fair value in accordance with SFAS 157 when the volume and level of
activity for the asset or liability have significantly decreased. This FSP also includes guidance on identifying circumstances that indicate a transaction is not orderly. Additionally, FSP 157-4 requires disclosure of the inputs and valuation
techniques used to measure fair value and a discussion of changes in valuation techniques in interim and annual periods. FSP 157-4 is effective for interim and annual reporting periods ending after June 15, 2009. We adopted FSP 157-4 on
March 29, 2009. The adoption did not have an impact on our Condensed Consolidated Financial Statements.

In May 2009, the FASB issued SFAS
No. 165, Subsequent Events (SFAS 165), which establishes general standards of accounting for and disclosure of events that occur after the balance sheet date but before financial statements are issued or are available to be issued.
The provisions of SFAS 165 are effective for interim and annual reporting periods ending after June 15, 2009. We adopted SFAS 165 for our second quarter ended June 27, 2009. The adoption did not have a significant impact on our Condensed
Consolidated Financial Statements.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



In June 2009, the FASB issued SFAS No. 166, Accounting for Transfers of Financial
Assets  an Amendment of FASB Statement No. 140 (SFAS 166), which revises SFAS No. 140, Accounting for Transfers and Servicing of Financial Assets and Extinguishments of Liabilities, to require enhanced disclosures
about transfers of financial assets and exposure to the risk related to transferred financial assets. The statement eliminates the concept of a qualifying special purpose entity and changes the requirements for derecognizing financial assets. SFAS
166 is effective for fiscal years ending after November 15, 2009. We are currently evaluating the potential impact of SFAS 166 on our Condensed Consolidated Financial Statements.

Note 2. Net Income (Loss) Per Share

Basic net income (loss) per share is computed by dividing net income (loss) by
the weighted-average number of common shares outstanding during the period. For purposes of computing basic net income (loss) per share, the weighted-average number of outstanding shares of common stock excludes unvested restricted stock awards.

Diluted net income (loss) per share is computed by dividing net income (loss) by the weighted-average number of common and potential common shares
outstanding during the period. Potential common shares represent the number of additional common shares that would have been outstanding if the dilutive potential shares had been issued, which consist primarily of stock options and restricted stock
awards.

The following table provides a reconciliation of the numerators and denominators of the basic and diluted per share computations:



|                                            |  |                                          |         |   |                  |   |        |                  |  |   |                  |   |  |   |        
|------------------------------------------- |  | ---------------------------------------- | ------- | - | ---------------- | - | ------ | ---------------- |  | - | ---------------- | - |  | - | -------
|                                            |  | Three Months Ended                       |         |   | Six Months Ended
|                                            |  | June 27,    2009                         |         |   | June 28,    2008 |   |        | June 27,    2009 |  |   | June 28,    2008
|                                            |  | (In thousands, except per share amounts)
|Numerator:                                  |  |                                          |         |   |                  |   |        |                  |  |   |                  |   |  |   |        
|Net income (loss)                           |  | $                                        | (50,008 | ) |                  | $ | (2,385 | )                |  | $ | (116,400         | ) |  | $ | 13,144 
|                                            |  |                                          |         |   |                  |   |        |                  |  |   |                  |   |  |   |        
|Denominator:                                |  |                                          |         |   |                  |   |        |                  |  |   |                  |   |  |   |        
|Basic weighted-average shares outstanding   |  |                                          | 96,472  |   |                  |   | 98,202 |                  |  |   | 96,336           |   |  |   | 99,429 
|Dilutive common equivalent shares           |  |                                          |        |   |                  |   |       |                  |  |   |                 |   |  |   | 702    
|                                            |  |                                          |         |   |                  |   |        |                  |  |   |                  |   |  |   |        
|Diluted weighted-average shares outstanding |  |                                          | 96,472  |   |                  |   | 98,202 |                  |  |   | 96,336           |   |  |   | 100,131
|                                            |  |                                          |         |   |                  |   |        |                  |  |   |                  |   |  |   |        
|Net income (loss) per share  Basic         |  | $                                        | (0.52   | ) |                  | $ | (0.02  | )                |  | $ | (1.21            | ) |  | $ | 0.13   
|Net income (loss) per share  Diluted       |  | $                                        | (0.52   | ) |                  | $ | (0.02  | )                |  | $ | (1.21            | ) |  | $ | 0.13   

For purposes of computing diluted net income per share, weighted average potential common shares do not include
potential common shares that are anti-dilutive under the treasury stock method or restricted shares subject to performance conditions that have not been met. Accordingly, potential common shares of 22.3 million for the six months ended
June 28, 2008 were excluded from the computation.

Potential common shares have not been included in the calculation of diluted net loss per share, as
the effect would be anti-dilutive. As such, the denominator used in computing both basic and diluted net loss per share for the three and six months ended June 27, 2009 and for the three months ended June 28, 2008 are the same. The number
of potential common shares that could dilute basic net income per share was 22.0 million and 22.4 million for the three and six months ended June 27, 2009, respectively, and 21.9 million for the three months ended June 28,
2008.

Note 3. Investments

All of our investments are
classified as available-for-sale. The cost and estimated fair value of our investments are as follows:



|                                  |  |                |         |                      |   |                       |  |   |                     |   |  |   |        
|--------------------------------- |  | -------------- | ------- | -------------------- | - | --------------------- |  | - | ------------------- | - |  | - | -------
|                                  |  | June 27, 2009 
|                                  |  | Cost           |         | GrossUnrealizedGains |   | GrossUnrealizedLosses |  |   | Estimated FairValue
|                                  |  | (In thousands)
|Tax-exempt securities, short-term |  | $              | 266,048 |                      | $ | 4,056                 |  | $ | (73                 | ) |  | $ | 270,031
|Tax-exempt securities, long-term  |  |                | 98,110  |                      |   |                      |  |   | (12,495             | ) |  |   | 85,615 
|                                  |  |                |         |                      |   |                       |  |   |                     |   |  |   |        
|Total                             |  | $              | 364,158 |                      | $ | 4,056                 |  | $ | (12,568             | ) |  | $ | 355,646
|                                  |  |                |         |                      |   |                       |  |   |                     |   |  |   |        



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



|                                  |  |                   |         |                      |   |                       |  |   |                     |   |  |   |        
|--------------------------------- |  | ----------------- | ------- | -------------------- | - | --------------------- |  | - | ------------------- | - |  | - | -------
|                                  | 
|                                  |  | December 31, 2008
|                                  |  | Cost              |         | GrossUnrealizedGains |   | GrossUnrealizedLosses |  |   | Estimated FairValue
|                                  |  | (In thousands)   
|Tax-exempt securities, short-term |  | $                 | 269,520 |                      | $ | 2,734                 |  | $ | (432                | ) |  | $ | 271,822
|Tax-exempt securities, long-term  |  |                   | 104,834 |                      |   |                      |  |   | (12,961             | ) |  |   | 91,873 
|                                  |  |                   |         |                      |   |                       |  |   |                     |   |  |   |        
|Total                             |  | $                 | 374,354 |                      | $ | 2,734                 |  | $ | (13,393             | ) |  | $ | 363,695
|                                  |  |                   |         |                      |   |                       |  |   |                     |   |  |   |        

Also included in our short-term investments balance as of June 27, 2009 and December 31, 2008 were other
investments of $12.5 million and $10.6 million, respectively, and interest receivable of $3.1 million and $4.1 million, respectively, that are excluded from the tables above.

The maturities of our investments are as follows:



|                             |  |                  |         |                  |   |        
|---------------------------- |  | ---------------- | ------- | ---------------- | - | -------
|                             |  | June 27,    2009 |         | December 31,2008
|                             |  | (In thousands)  
|Due in less than one year    |  | $                | 78,249  |                  | $ | 47,599 
|Due in 1 to 3 years          |  |                  | 174,982 |                  |   | 203,303
|Due in 3 to 5 years          |  |                  | 1,608   |                  |   |       
|Due in 5 to 10 years         |  |                  | 4,286   |                  |   | 11,210 
|Due in greater than 10 years |  |                  | 96,521  |                  |   | 101,583
|                             |  |                  |         |                  |   |        
|Total                        |  | $                | 355,646 |                  | $ | 363,695
|                             |  |                  |         |                  |   |        

Securities with contractual maturities greater than five years consist of auction-rate securities and
variable-rate demand notes. We classify auction-rate securities in long-term investments on our Condensed Consolidated Balance Sheets as they are not readily available to us due to failed auctions in the marketplace. We classify variable-rate demand
notes in short-term investments on our Condensed Consolidated Balance Sheets as they are payable on demand.

The breakdown of investments with unrealized
losses as of June 27, 2009 is as follows:



|                                  |  |                                         |        |                  |                                          |     |           |       |                  |        |  |           |         |                  |  |   |         |  |   |         |  
|--------------------------------- |  | --------------------------------------- | ------ | ---------------- | ---------------------------------------- | --- | --------- | ----- | ---------------- | ------ |  | --------- | ------- | ---------------- |  | - | ------- |  | - | ------- | -
|                                  |  | In Loss Position for LessThan 12 Months |        |                  | In Loss Position for12 Months or Greater |     |           | Total |                 
|                                  |  | FairValue                               |        | UnrealizedLosses |                                          |     | FairValue |       | UnrealizedLosses |        |  | FairValue |         | UnrealizedLosses | 
|                                  |  | (In thousands)                          |       
|Tax-exempt securities, short-term |  | $                                       | 16,091 |                  | $                                        | (73 | )         |       | $                |       |  | $         |        |                  |  | $ | 16,091  |  | $ | (73     | )
|Tax-exempt securities, long-term  |  |                                         |       |                  |                                          |    |           |       |                  | 85,615 |  |           | (12,495 | )                |  |   | 85,615  |  |   | (12,495 | )
|                                  |  |                                         |        |                  |                                          |     |           |       |                  |        |  |           |         |                  |  |   |         |  |   |         |  
|Total                             |  | $                                       | 16,091 |                  | $                                        | (73 | )         |       | $                | 85,615 |  | $         | (12,495 | )                |  | $ | 101,706 |  | $ | (12,568 | )
|                                  |  |                                         |        |                  |                                          |     |           |       |                  |        |  |           |         |                  |  |   |         |  |   |         |  

The gross unrealized losses related to short-term investments are primarily due to fluctuations in interest rates
and quoted market prices. We view these unrealized losses as temporary in nature. The gross unrealized losses related to long-term investments are primarily due to our assumptions about the anticipated term and yield of these investments given the
lack of an active market. We review our investment portfolio for possible impairment on a quarterly basis. Impairment is based on an analysis of factors that may have adverse affects on the fair value of the investment. Factors considered in
determining whether a loss is temporary include our intent to sell the security, our ability to hold the security to recovery and our assessment of the credit quality of the security, including whether we expect to recover the amortized cost basis
of the security.

For the three months ended June 27, 2009 and June 28, 2008, we sold investments for proceeds of $91.5 million and $14.9
million, respectively.

See additional disclosures regarding the fair value of our investments in Note 4.



9



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



Note 4. Fair Value of Financial Instruments

Fair Value Hierarchy

We define fair value as the price that
would be received from selling an asset or paid to transfer a liability in an orderly transaction between market participants at the measurement date. When determining the fair value measurements for assets and liabilities required or permitted to
be recorded at fair value, we consider the principal or most advantageous market in which we would transact and we consider assumptions that market participants would use when pricing the asset or liability, such as inherent risk, transfer
restrictions, and risk of nonperformance.

Our financial instruments consist primarily of money market funds, municipal bonds, variable-rate demand notes
and auction-rate securities. Three levels of inputs are used to measure the fair value of our investments:



| | Level 1 - | Quoted prices in active markets for identical assets or liabilities.
| | --------- | --------------------------------------------------------------------

We classify our money market funds as Level 1 instruments as they are traded in active markets with sufficient volume and frequency of transactions.



| | Level 2 - | Observable inputs other than Level 1 prices such as quoted prices for similar assets or liabilities; quoted prices in markets with insufficient volume or infrequent transactions
(less active markets); or model-derived valuations in which all significant inputs are observable or can be derived principally from or corroborated with observable market data for substantially the full term of the assets or liabilities.
| | --------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

We classify our municipal bonds and variable-rate demand notes as Level 2 instruments due to our use of observable market
prices in less active markets or, when observable market prices were not available, our use of non-binding market prices that are corroborated by observable market data or quoted market prices for similar instruments.



| | Level 3 - | Unobservable inputs to the valuation methodology that are significant to the measurement of fair value of assets or liabilities.
| | --------- | --------------------------------------------------------------------------------------------------------------------------------

We classify our auction-rate securities as Level 3 instruments as their valuation requires the use of significant unobservable inputs to our
cash-flow-based valuation model. Our valuation of these securities incorporates our assumptions about the anticipated term and yield that a market participant would require to purchase such securities in the marketplace. See further discussion on
auction-rate securities below.

Financial Instruments Measured at Fair Value on a Recurring Basis

Financial instruments measured at fair value on a recurring basis, excluding accrued interest components, consist of the following types of instruments:



|                           |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|-------------------------- |  | ---------------------------------------------------------- | ------- | ------------------------------------------- | - | -------------------------------------- |  | ----- | ------ |  | - | -------
|                           |  | Fair Value Measurements at June 27, 2009                  
|                           |  | Quoted Prices inActive
Marketsfor IdenticalAssets(Level 1) |         | Significant OtherObservable Inputs(Level 2) |   | SignificantUnobservableInputs(Level 3) |  | Total
|                           |  | (In thousands)                                            
|Assets                     |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Money market funds         |  | $                                                          | 279,847 |                                             | $ |                                       |  | $     |       |  | $ | 279,847
|Municipal bonds            |  |                                                            |        |                                             |   | 262,847                                |  |       |       |  |   | 262,847
|Variable-rate demand notes |  |                                                            |        |                                             |   | 16,800                                 |  |       |       |  |   | 16,800 
|Auction-rate securities    |  |                                                            |        |                                             |   |                                       |  |       | 85,615 |  |   | 85,615 
|Derivative assets (1)      |  |                                                            |        |                                             |   | 320                                    |  |       |       |  |   | 320    
|                           |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Total assets               |  | $                                                          | 279,847 |                                             | $ | 279,967                                |  | $     | 85,615 |  | $ | 645,429
|                           |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Liabilities                |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Derivative liabilities (1) |  | $                                                          |        |                                             | $ | 188                                    |  | $     |       |  | $ | 188    
|                           |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        



|(1) | See Note 5.
|--- | -----------



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)





|                           |  |                                                              |         |                                             |   |                                                |  |       |        |  |   |        
|-------------------------- |  | ------------------------------------------------------------ | ------- | ------------------------------------------- | - | ---------------------------------------------- |  | ----- | ------ |  | - | -------
|                           |  | Fair Value Measurements at December 31, 2008                
|                           |  | Quoted Prices in  Active Marketsfor IdenticalAssets(Level 1) |         | Significant OtherObservable Inputs(Level
2) |   | Significant    Unobservable    Inputs(Level 3) |  | Total
|                           |  | (In thousands)                                              
|Assets                     |  |                                                              |         |                                             |   |                                                |  |       |        |  |   |        
|Money market funds         |  | $                                                            | 254,323 |                                             | $ |                                               |  | $     |       |  | $ | 254,323
|Municipal bonds            |  |                                                              |        |                                             |   | 259,775                                        |  |       |       |  |   | 259,775
|Variable-rate demand notes |  |                                                              |        |                                             |   | 18,504                                         |  |       |       |  |   | 18,504 
|Auction-rate securities    |  |                                                              |        |                                             |   |                                               |  |       | 91,873 |  |   | 91,873 
|Derivative assets          |  |                                                              |        |                                             |   | 2,204                                          |  |       |       |  |   | 2,204  
|                           |  |                                                              |         |                                             |   |                                                |  |       |        |  |   |        
|Total assets               |  | $                                                            | 254,323 |                                             | $ | 280,483                                        |  | $     | 91,873 |  | $ | 626,679
|                           |  |                                                              |         |                                             |   |                                                |  |       |        |  |   |        
|Liabilities                |  |                                                              |         |                                             |   |                                                |  |       |        |  |   |        
|Derivative liabilities     |  | $                                                            |        |                                             | $ | 4,049                                          |  | $     |       |  | $ | 4,049  
|                           |  |                                                              |         |                                             |   |                                                |  |       |        |  |   |        

Financial instruments measured and recorded at fair value on a recurring basis, excluding accrued interest
components, were presented on our Condensed Consolidated Balance Sheets as follows:



|                                                 |  |                                                              |         |                                             |   |                                        |  |       |        |  |   |        
|------------------------------------------------ |  | ------------------------------------------------------------ | ------- | ------------------------------------------- | - | -------------------------------------- |  | ----- | ------ |  | - | -------
|                                                 |  | Fair Value Measurements at June 27, 2009                    
|                                                 |  | Quoted Prices in  Active Marketsfor IdenticalAssets(Level 1) |         | Significant OtherObservable Inputs(Level 2) |   | SignificantUnobservableInputs(Level 3) |  | Total
|                                                 |  | (In thousands)                                              
|Assets                                           |  |                                                              |         |                                             |   |                                        |  |       |        |  |   |        
|Cash and cash equivalents                        |  | $                                                            | 145,202 |                                             | $ | 9,616                                  |  | $     |       |  | $ | 154,818
|Short-term investments                           |  |                                                              |        |                                             |   | 270,031                                |  |       |       |  |   | 270,031
|Prepaid and other current assets (1)             |  |                                                              |        |                                             |   | 320                                    |  |       |       |  |   | 320    
|Non-current restricted cash and cash equivalents |  |                                                              | 134,645 |                                             |   |                                       |  |       |       |  |   | 134,645
|Long-term investments                            |  |                                                              |        |                                             |   |                                       |  |       | 85,615 |  |   | 85,615 
|                                                 |  |                                                              |         |                                             |   |                                        |  |       |        |  |   |        
|Total assets                                     |  | $                                                            | 279,847 |                                             | $ | 279,967                                |  | $     | 85,615 |  | $ | 645,429
|                                                 |  |                                                              |         |                                             |   |                                        |  |       |        |  |   |        
|Liabilities                                      |  |                                                              |         |                                             |   |                                        |  |       |        |  |   |        
|Other accrued liabilities (1)                    |  | $                                                            |        |                                             | $ | 188                                    |  | $     |       |  | $ | 188    
|                                                 |  |                                                              |         |                                             |   |                                        |  |       |        |  |   |        



|(1) | See Note 5.
|--- | -----------



|                                              |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|--------------------------------------------- |  | ---------------------------------------------------------- | ------- | ------------------------------------------- | - | -------------------------------------- |  | ----- | ------ |  | - | -------
|                                              |  | Fair Value Measurements at December 31, 2008              
|                                              |  | Quoted Prices inActive
Marketsfor IdenticalAssets(Level 1) |         | Significant OtherObservable Inputs(Level 2) |   | SignificantUnobservableInputs(Level 3) |  | Total
|                                              |  | (In thousands)                                            
|Assets                                        |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Cash and cash equivalents                     |  | $                                                          | 137,504 |                                             | $ | 6,458                                  |  | $     |       |  | $ | 143,962
|Short-term investments                        |  |                                                            |        |                                             |   | 271,821                                |  |       |       |  |   | 271,821
|Restricted cash and cash equivalents, current |  |                                                            | 116,819 |                                             |   |                                       |  |       |       |  |   | 116,819
|Prepaid and other current assets              |  |                                                            |        |                                             |   | 2,204                                  |  |       |       |  |   | 2,204  
|Long-term investments                         |  |                                                            |        |                                             |   |                                       |  |       | 91,873 |  |   | 91,873 
|                                              |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Total assets                                  |  | $                                                          | 254,323 |                                             | $ | 280,483                                |  | $     | 91,873 |  | $ | 626,679
|                                              |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Liabilities                                   |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        
|Other accrued liabilities                     |  | $                                                          |        |                                             | $ | 4,049                                  |  | $     |       |  | $ | 4,049  
|                                              |  |                                                            |         |                                             |   |                                        |  |       |        |  |   |        



11



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



The table below presents a reconciliation of all financial instruments measured at fair value
on a recurring basis using significant unobservable inputs (Level 3). We classify financial instruments in Level 3 of the fair value hierarchy when there is reliance on at least one significant unobservable input to the valuation model. In addition
to these unobservable inputs, the valuation models for Level 3 financial instruments typically also rely on a number of inputs that are readily observable either directly or indirectly. Thus, the gains and losses presented below include changes in
the fair value related to both observable and unobservable inputs. All Level 3 financial instruments are auction-rate securities.



|                                              |  |                                                                        |        |   |                 |   |         |                  |  |   |              |   |  |   |         |  
|--------------------------------------------- |  | ---------------------------------------------------------------------- | ------ | - | --------------- | - | ------- | ---------------- |  | - | ------------ | - |  | - | ------- | -
|                                              |  | Fair Value Measurements UsingSignificant Unobservable Inputs
(Level 3) |       
|                                              |  | Three MonthsEnded                                                      |        |   | Six MonthsEnded |  
|                                              |  | June 27,    2009                                                       |        |   | June 28,2008    |   |         | June 27,    2009 |  |   | June 28,2008 |  
|                                              |  | (In thousands)                                                         |       
|Balance, beginning of period                  |  | $                                                                      | 88,584 |   |                 | $ | 117,634 |                  |  | $ | 91,873       |   |  | $ |        |  
|Transfers in                                  |  |                                                                        |       |   |                 |   |        |                  |  |   |             |   |  |   | 123,420 |  
|Realized and unrealized gains (losses), net   |  |                                                                        |        |   |                 |   |         |                  |  |   |              |   |  |   |         |  
|Included in net income (loss)                 |  |                                                                        |       |   |                 |   |        |                  |  |   |             |   |  |   |        |  
|Included in other comprehensive income (loss) |  |                                                                        | 4,906  |   |                 |   | (1,359  | )                |  |   | 3,957        |   |  |   | (7,145  | )
|Settlements                                   |  |                                                                        | (7,875 | ) |                 |   | (4,220  | )                |  |   | (10,215      | ) |  |   | (4,220  | )
|                                              |  |                                                                        |        |   |                 |   |         |                  |  |   |              |   |  |   |         |  
|Balance, end of period                        |  | $                                                                      | 85,615 |   |                 | $ | 112,055 |                  |  | $ | 85,615       |   |  | $ | 112,055 |  
|                                              |  |                                                                        |        |   |                 |   |         |                  |  |   |              |   |  |   |         |  

Auction-rate securities include auction-rate notes and auction-rate preferred shares of tax-exempt closed-end
municipal funds. Our auction-rate notes consist of student loans that are substantially backed by the federal government. Due to auction failures in the marketplace, we will not have access to these funds unless (a) future auctions are
successful, (b) the securities are called by the issuer, (c) we sell the securities in a secondary market, or (d) the underlying notes mature. Currently, there are no active secondary markets. As of June 27, 2009 we have recorded
a cumulative temporary unrealized impairment loss of $12.5 million within other comprehensive income (loss) (OCI) based upon our assessment of the fair value of these securities. We believe that this impairment is temporary as we do not intend to
sell these securities, we will not be required to sell these securities before recovery and we expect to recover the amortized cost basis of these securities.

Fair Value of Other Financial Instruments

The carrying and estimated fair values of our other financial instruments are as follows:



|                                                 |  |                |         |                     |   |               |  |                     |         |  |   |        
|------------------------------------------------ |  | -------------- | ------- | ------------------- | - | ------------- |  | ------------------- | ------- |  | - | -------
|                                                 |  | June 27, 2009  |         | December 31, 2008  
|                                                 |  | CarryingValue  |         | Estimated FairValue |   | CarryingValue |  | Estimated FairValue
|                                                 |  | (In thousands)
|Assets                                           |  |                |         |                     |   |               |  |                     |         |  |   |        
|Cash and cash equivalents                        |  | $              | 35,880  |                     | $ | 35,880        |  | $                   | 40,370  |  | $ | 40,370 
|Accrued interest receivable                      |  |                | 3,115   |                     |   | 3,115         |  |                     | 4,139   |  |   | 4,139  
|Other investments                                |  |                | 12,454  |                     |   | 12,454        |  |                     | 10,596  |  |   | 10,596 
|Non-current restricted cash and cash equivalents |  |                | 3,147   |                     |   | 3,147         |  |                     | 2,883   |  |   | 2,883  
|                                                 |  |                |         |                     |   |               |  |                     |         |  |   |        
|Total assets                                     |  | $              | 54,596  |                     | $ | 54,596        |  | $                   | 57,988  |  | $ | 57,988 
|                                                 |  |                |         |                     |   |               |  |                     |         |  |   |        
|                                                 |  |                |         |                    
|Liabilities                                      |  |                |         |                     |   |               |  |                     |         |  |   |        
|Current debt obligations                         |  | $              | 1,859   |                     | $ | 1,859         |  | $                   | 112,907 |  | $ | 112,254
|Long-term debt obligations                       |  |                | 111,221 |                     |   | 111,221       |  |                     |        |  |   |       
|                                                 |  |                |         |                     |   |               |  |                     |         |  |   |        
|Total liabilities                                |  | $              | 113,080 |                     | $ | 113,080       |  | $                   | 112,907 |  | $ | 112,254
|                                                 |  |                |         |                     |   |               |  |                     |         |  |   |        

Cash and cash equivalents, accrued interest receivable and non-current restricted cash and cash equivalents are
recorded at their carrying value. The carrying value approximates fair value because of the short maturity of those instruments. Other investments are recorded at their carrying value as these investments have a determinable cash surrender value,
which is the best available evidence of



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



fair value. Accrued interest receivable and other investments are classified within short-term investments on our Condensed Consolidated Balance Sheets. Our
debt obligations are not publicly traded and are primarily denominated in Euros. As we refinanced this obligation in June 2009, the estimated fair value of the liability equals the carrying value. Judgment is required to estimate the fair value,
using available market information and appropriate valuation methods.

See additional disclosures regarding our investments in Note 3.

Note 5. Derivative Financial Instruments

We manage our foreign
currency exchange rate risk through foreign currency forward exchange contracts to hedge against the short-term impact of currency fluctuations. We enter into foreign currency forward exchange contracts with maturities generally less than 12 months
to mitigate the impact of currency exchange fluctuations on (a) probable system sales denominated in Japanese yen, (b) our net investment in certain foreign subsidiaries and (c) other monetary asset and liability balances denominated
in foreign currencies. All derivatives are recorded at fair value in either prepaid and other current assets or other accrued liabilities. We report cash flows from derivative instruments in cash flows from operating activities. We used the income
approach to value our derivative instruments using observable inputs other than quoted prices, including interest rates and credit risk.

As of
June 27, 2009, the notional amounts of outstanding hedge contracts were as follows:



|                       |  |                |        |                |   |       
|---------------------- |  | -------------- | ------ | -------------- | - | ------
|                       |  | Buy Contracts  |        | Sell Contracts
|                       |  | (In thousands)
|Japanese Yen           |  | $              | 23,484 |                | $ | 35,025
|Euro                   |  |                | 16,750 |                |   | 12,016
|British Pound Sterling |  |                | 4,672  |                |   | 4,674 
|Malaysian Ringgit      |  |                | 3,721  |                |   | 3,720 
|Chinese Renminbi       |  |                | 3,071  |                |   | 3,070 
|Israeli Shekel         |  |                | 1,915  |                |   | 1,904 
|Indian Rupee           |  |                | 1,684  |                |   | 1,683 
|Korean Won             |  |                | 1,224  |                |   | 1,223 
|Taiwan Dollar          |  |                | 838    |                |   | 837   
|Swiss Franc            |  |                |       |                |   | 1,388 
|                       |  |                |        |                |   |       
|Total                  |  | $              | 57,359 |                | $ | 65,540
|                       |  |                |        |                |   |       

Cash Flow Hedges.We designate and document our foreign currency forward exchange contracts as cash flow
hedges on sales transactions in which costs are denominated in U.S. dollars and the related revenues are generated in Japanese yen. We evaluate and calculate the effectiveness of each hedge at least quarterly, using the dollar offset method,
comparing the change in the forward contracts fair value on a spot-to-spot basis to the spot-to-spot change in the anticipated transaction. The effective change is recorded in other comprehensive income (loss) (OCI) until the sale is
recognized. Ineffectiveness, along with the excluded time value of the forward contracts, is recorded in net sales as designated at the inception of the forward contract. In the event it becomes probable that an anticipated hedged transaction will
not occur within the specified time period, the gains or losses on the related cash flow hedges are immediately reclassified from accumulated other comprehensive income (loss) to net sales in the Condensed Consolidated Statement of Operations. No
such events occurred for the three and six months ended June 27, 2009. During the three and six months ended June 28, 2008, we reclassified $0.7 million from accumulated OCI into net sales as a result of the discontinuance of anticipated
hedged transactions.

Net Investment Hedges.We hedge our net investment in certain foreign subsidiaries to reduce economic currency risk. The
foreign currency forward exchange contracts used to hedge this exposure are designated and documented as net investment hedges. Effectiveness is evaluated at least quarterly, excluding time value, and hedges are highly effective when currency pairs
and notional amounts on the forward exchange contracts are properly aligned with the net investment in subsidiaries. Changes in the spot-to-spot value are recorded as foreign currency translation adjustments within OCI. Ineffectiveness, if any,
along with the excluded time value of the forward contracts, is recorded in other income (expense), net.

Other Foreign Currency Hedges.We enter
into foreign currency forward exchange contracts to hedge (a) intercompany balances that are denominated in non-functional currencies (b) certain third-party receivables denominated in Japanese yen and (c) anticipated sales
denominated in foreign currency that we do not designate and document as cash flow hedges. The maturities of these contracts are generally less than 12 months. Gains or losses arising from the remeasurement of these contracts to fair value each
period are recorded in other income (expense), net.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



The fair value and balance sheet classification of foreign exchange contract derivatives are
as follows:



|                                                              |  |                |    
|------------------------------------------------------------- |  | -------------- | ---
|                                                              |  | June 27,2009  
|                                                              |  | (In thousands)
|Prepaid and other current assets:                             |  |                |    
|Derivative assets not designated as hedging instruments:      |  |                |    
|Other foreign currency hedges                                 |  | $              | 320
|                                                              |  |                |    
|Total derivative assets (1)                                   |  | $              | 320
|                                                              |  |                |    
|Other accrued liabilities:                                    |  |                |    
|Derivative liabilities designated as hedging instruments:     |  |                |    
|Cash flow hedges                                              |  | $              | 27 
|Net investment hedges                                         |  |                | 12 
|Derivative liabilities not designated as hedging instruments: |  |                |    
|Other foreign currency hedges                                 |  |                | 149
|                                                              |  |                |    
|Total derivative liabilities (1)                              |  | $              | 188
|                                                              |  |                |    
|(1)    See Note 4.                                            |  |                |    

The following tables summarize the pre-tax effect of foreign exchange contract derivatives by (a) cash flow
hedges, (b) net investment hedges and (c) other foreign currency hedges on OCI and the Condensed Consolidated Statements of Operations for the three and six months ended June 27, 2009.



|(a) | Cash Flow Hedges:
|--- | -----------------



|                                                                             |  |                   |      |   |                 |   |        |  
|---------------------------------------------------------------------------- |  | ----------------- | ---- | - | --------------- | - | ------ | -
|                                                                             |  | Three MonthsEnded |      |   | Six MonthsEnded |  
|                                                                             |  | June 27,2009      |      |   | June 27,2009    |  
|                                                                             |  | (In thousands)    |     
|Accumulated loss in OCI, beginning of period                                 |  | $                 | (679 | ) |                 | $ | (1,137 | )
|Losses recorded in OCI (effective portion), net                              |  |                   | (28  | ) |                 |   | (21    | )
|Gains reclassified from OCI to net sales (effective portion), net            |  |                   | 6    |   |                 |   | 457    |  
|                                                                             |  |                   |      |   |                 |   |        |  
|Accumulated loss in OCI, end of period                                       |  | $                 | (701 | ) |                 | $ | (701   | )
|                                                                             |  |                   |      |   |                 |   |        |  
|Gains (losses) recorded in net sales related to the ineffective portion, net |  | $                 | (1   | ) |                 | $ | 6      |  
|Gains recorded in net sales related to the excluded time value portion, net  |  | $                 | 1    |   |                 | $ | 9      |  

We anticipate reclassifying the accumulated loss recorded as of June 27, 2009 from OCI to net sales within 12
months.



|(b) | Net Investment Hedges:
|--- | ----------------------



|                                                                               |  |                   |        |   |                 |   |      
|------------------------------------------------------------------------------ |  | ----------------- | ------ | - | --------------- | - | -----
|                                                                               |  | Three MonthsEnded |        |   | Six MonthsEnded
|                                                                               |  | June 27,2009      |        |   | June 27,2009   
|                                                                               |  | (In thousands)   
|Gains (losses) recorded in OCI (effective portion), net                        |  | $                 | (1,446 | ) |                 | $ | 1,450
|Gains recorded in other income related to the excluded time value portion, net |  | $                 | 19     |   |                 | $ | 80   



|(c) | Other Foreign Currency Hedges:
|--- | ------------------------------



|                                      |  |                   |     |                 |   |   
|------------------------------------- |  | ----------------- | --- | --------------- | - | --
|                                      |  | Three MonthsEnded |     | Six MonthsEnded
|                                      |  | June 27,2009      |     | June 27,2009   
|                                      |  | (In thousands)   
|Gains recognized in other income, net |  | $                 | 952 |                 | $ | 17



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



Note 6. Inventories

Inventories are stated at the lower of cost, on a first-in, first-out basis, or market and consisted of the following:



|                          |  |                  |         |                  |   |        
|------------------------- |  | ---------------- | ------- | ---------------- | - | -------
|                          |  | June 27,    2009 |         | December 31,2008
|                          |  | (In thousands)  
|Purchased and spare parts |  | $                | 106,987 |                  | $ | 139,635
|Work-in-process           |  |                  | 27,531  |                  |   | 31,101 
|Finished goods            |  |                  | 29,200  |                  |   | 42,569 
|                          |  |                  |         |                  |   |        
|Total inventories         |  | $                | 163,718 |                  | $ | 213,305
|                          |  |                  |         |                  |   |        

Finished goods inventories include $5.4 million and $13.7 million as of June 27, 2009 and December 31,
2008, respectively, of evaluation systems at customer locations.

Note 7. Goodwill and Intangible Assets

Goodwill

A summary of changes in goodwill for the six months
ended June 27, 2009 is as follows:



|                             |  |                    |         |                             |   |        |       |  |   |         |  
|---------------------------- |  | ------------------ | ------- | --------------------------- | - | ------ | ----- |  | - | ------- | -
|                             |  | SemiconductorGroup |         | IndustrialApplicationsGroup |   |        | Total | 
|                             |  | (In thousands)     |        
|Balance, beginning of period |  | $                  | 108,431 |                             | $ | 17,642 |       |  | $ | 126,073 |  
|Foreign currency translation |  |                    |        |                             |   | (93    | )     |  |   | (93     | )
|                             |  |                    |         |                             |   |        |       |  |   |         |  
|Balance, end of period       |  | $                  | 108,431 |                             | $ | 17,549 |       |  | $ | 125,980 |  
|                             |  |                    |         |                             |   |        |       |  |   |         |  

We evaluate recorded goodwill for impairment on at least an annual basis, or more frequently if indicators of
impairment exist. Our annual impairment test in the fourth quarter of 2008 resulted in a non-cash impairment charge within our Industrial Applications Group. In the fourth quarter of 2008 the fair value of our Semiconductor Group marginally exceeded
book value, which indicated that no impairment was present for this reporting unit. As of March 28, 2009 our expectations of future operating results declined from those used to perform our 2008 annual impairment test. This fact, in conjunction
with the results of the fourth quarter 2008 annual impairment test, led us to determine that an indicator of potential impairment existed and that an interim impairment test was required. After completing the interim impairment test, we determined
that the estimated fair value of each reporting unit exceeded its carrying value. As a result, no additional impairment charges were recorded. No indicators of impairment were present during the second quarter of 2009. Future impairment charges may
be required if our operating results do not meet current forecasts or if we have a sustained decline in our market capitalization that is determined to be indicative of a reduction in fair value of one or both of our reporting units.

Intangible Assets

The following tables provide details of our
acquired intangible assets:





|                                    |  |                                   |  |                   |        |                         |   |         |     |  |                                   |        |       |    |                         |   |        |     |   |         |   |  |   |       
|----------------------------------- |  | --------------------------------- |  | ----------------- | ------ | ----------------------- | - | ------- | --- |  | --------------------------------- | ------ | ----- | -- | ----------------------- | - | ------ | --- | - | ------- | - |  | - | ------
|                                    |  | June 27, 2009                     |  | December 31, 2008
|                                    |  | WeightedAverageAmortizationPeriod |  | Gross             |        | AccumulatedAmortization |   |         | Net |  | WeightedAverageAmortizationPeriod |        | Gross |    | AccumulatedAmortization |   |        | Net
|                                    |  | (Years)                           |  |                   |        | (In thousands)          |   |         |     |  | (Years)                           |        |       |    | (In thousands)          |   |        |    
|Patents and other intangible assets |  | 11                                |  | $                 | 18,654 |                         | $ | (3,910  | )   |  | $                                 | 14,744 |       | 12 |                         | $ | 16,656 |     | $ | (3,110  | ) |  | $ | 13,546
|Developed technology                |  | 6                                 |  |                   | 30,772 |                         |   | (27,710 | )   |  |                                   | 3,062  |       | 6  |                         |   | 30,829 |     |   | (26,619 | ) |  |   | 4,210 
|Trademark                           |  | 10                                |  |                   | 7,495  |                         |   | (3,572  | )   |  |                                   | 3,923  |       | 10 |                         |   | 7,532  |     |   | (3,214  | ) |  |   | 4,318 
|                                    |  |                                   |  |                   |        |                         |   |         |     |  |                                   |        |       |    |                         |   |        |     |   |         |   |  |   |       
|Total intangible assets             |  | 9                                 |  | $                 | 56,921 |                         | $ | (35,192 | )   |  | $                                 | 21,729 |       | 9  |                         | $ | 55,017 |     | $ | (32,943 | ) |  | $ | 22,074
|                                    |  |                                   |  |                   |        |                         |   |         |     |  |                                   |        |       |    |                         |   |        |     |   |         |   |  |   |       

Our estimated amortization expense for intangible assets is approximately $2.4 million for the two remaining
quarters of 2009, and $3.7 million, $2.6 million, $2.6 million, $2.6 million and $2.3 million for the years ending December 31, 2010, 2011, 2012, 2013 and 2014, respectively. As of June 27, 2009, we had no recorded identifiable intangible
assets with indefinite lives.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



Note 8. Product Warranty

Changes in the accrued warranty liability were as follows:



|                                                                            |  |                    |        |   |                  |   |         |                  |  |   |                  |   |  |   |         |  
|--------------------------------------------------------------------------- |  | ------------------ | ------ | - | ---------------- | - | ------- | ---------------- |  | - | ---------------- | - |  | - | ------- | -
|                                                                            |  | Three Months Ended |        |   | Six Months Ended |  
|                                                                            |  | June 27,    2009   |        |   | June 28,    2008 |   |         | June 27,    2009 |  |   | June 28,    2008 |  
|                                                                            |  | (In thousands)     |       
|Balance, beginning of period                                                |  | $                  | 22,114 |   |                  | $ | 49,531  |                  |  | $ | 30,438           |   |  | $ | 54,857  |  
|Warranties issued                                                           |  |                    | 5,016  |   |                  |   | 16,616  |                  |  |   | 12,619           |   |  |   | 31,860  |  
|Settlements                                                                 |  |                    | (7,404 | ) |                  |   | (24,068 | )                |  |   | (21,139          | ) |  |   | (43,238 | )
|Net changes in liability for pre-existing warranties, including expirations |  |                    | (1,450 | ) |                  |   | (718    | )                |  |   | (3,642           | ) |  |   | (2,118  | )
|                                                                            |  |                    |        |   |                  |   |         |                  |  |   |                  |   |  |   |         |  
|Balance, end of period                                                      |  |                    | 18,276 |   |                  |   | 41,361  |                  |  |   | 18,276           |   |  |   | 41,361  |  
|Less: Long-term portion                                                     |  |                    | (2,471 | ) |                  |   | (7,135  | )                |  |   | (2,471           | ) |  |   | (7,135  | )
|                                                                            |  |                    |        |   |                  |   |         |                  |  |   |                  |   |  |   |         |  
|Accrued warranty, current                                                   |  | $                  | 15,805 |   |                  | $ | 34,226  |                  |  | $ | 15,805           |   |  | $ | 34,226  |  
|                                                                            |  |                    |        |   |                  |   |         |                  |  |   |                  |   |  |   |         |  

Note 9. Restructuring Charges

As of June 27, 2009, substantially all actions under our restructuring plans were completed, except for payments of future rent obligations. The remaining excess facility costs are stated at estimated net present
value, net of estimated sublease income. We expect to pay remaining obligations in connection with vacated facilities no later than the expiration dates of the lease terms, which expire on various dates through 2017. For the three and six months
ended June 27, 2009, adjustments to previously recorded restructuring costs were made due to changes in estimated sublease income over the remaining lease term. These adjustments are included within restructuring charges on our Condensed
Consolidated Statements of Operations. All restructuring activity relates to the Semiconductor Group.

The following table summarizes our restructuring
activity:



|                                        |  |                    |        |   |                  |   |        |                  |  |   |                  |   |  |   |        |  
|--------------------------------------- |  | ------------------ | ------ | - | ---------------- | - | ------ | ---------------- |  | - | ---------------- | - |  | - | ------ | -
|                                        |  | Three Months Ended |        |   | Six Months Ended |  
|                                        |  | June 27,    2009   |        |   | June 28,    2008 |   |        | June 27,    2009 |  |   | June 28,    2008 |  
|                                        |  | (In thousands)     |       
|Balance, beginning of period            |  | $                  | 17,399 |   |                  | $ | 16,502 |                  |  | $ | 18,178           |   |  | $ | 17,654 |  
|Adjustment of prior restructuring costs |  |                    | 2,921  |   |                  |   | 1,042  |                  |  |   | 3,234            |   |  |   | 1,042  |  
|Cash payments                           |  |                    | (812   | ) |                  |   | (721   | )                |  |   | (1,904           | ) |  |   | (1,873 | )
|                                        |  |                    |        |   |                  |   |        |                  |  |   |                  |   |  |   |        |  
|Balance, end of period                  |  | $                  | 19,508 |   |                  | $ | 16,823 |                  |  | $ | 19,508           |   |  | $ | 16,823 |  
|                                        |  |                    |        |   |                  |   |        |                  |  |   |                  |   |  |   |        |  

Note 10. Debt Obligations

As of June 27, 2009, we had current debt obligations outstanding of $1.9 million at a weighted-average interest rate of 5.0%.

On June 17, 2009, we entered into a Credit Agreement (the Agreement) with Bank of America, N.A. The Agreement established a secured credit line with an aggregate committed maximum amount of 80 million Euros at an
interest rate of Euro Interbank Offered Rate (EURIBOR) plus 75 basis points, the outstanding balance of which is due and payable on or before June 22, 2012. Upon execution of the agreement, we borrowed 79.5 million Euros against this
credit line. The proceeds of the loan were used to retire our credit facility with JPMorgan Chase Bank, which was due and payable on June 25, 2009. The JPMorgan Credit Agreement was used to fund the acquisition of Peter Wolters AG in June of
2004 and for general corporate purposes. As of June 27, 2009, we had amounts outstanding of $111.2 million at an effective interest rate of 1.8%, secured by deposits in money market funds at 115 percent of the outstanding balance. This amount
is included within non-current restricted cash and cash equivalents on our Condensed Consolidated Balance Sheet. The Agreement contains a financial covenant with which we were in compliance as of June 27, 2009.

We terminated our $150.0 million senior unsecured revolving credit facility on April 21, 2009 and did not incur any penalties related to the termination. We had no
amounts available or outstanding under this facility as of the termination date.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



Note 11. Other Income (Expense), Net

The components of other income (expense), net are as follows:



|                                              |  |                    |       |                  |                  |   |                  |  |   |                  |   |  |   |        |  
|--------------------------------------------- |  | ------------------ | ----- | ---------------- | ---------------- | - | ---------------- |  | - | ---------------- | - |  | - | ------ | -
|                                              |  | Three Months Ended |       | Six Months Ended |                 
|                                              |  | June 27,    2009   |       |                  | June 28,    2008 |   | June 27,    2009 |  |   | June 28,    2008 |  
|                                              |  | (In thousands)     |      
|Gain (loss) on other investments              |  | $                  | 1,228 |                  |                  | $ | 516              |  | $ | 717              |   |  | $ | (159   | )
|Foreign currency gain (loss), net             |  |                    | (583  | )                |                  |   | 986              |  |   | (1,080           | ) |  |   | (1,400 | )
|Other-than-temporary impairment of investment |  |                    |      |                  |                  |   |                 |  |   |                 |   |  |   | (737   | )
|Other                                         |  |                    | (46   | )                |                  |   | 1,137            |  |   | 199              |   |  |   | 3,242  |  
|                                              |  |                    |       |                  |                  |   |                  |  |   |                  |   |  |   |        |  
|Other income (expense), net                   |  | $                  | 599   |                  |                  | $ | 2,639            |  | $ | (164             | ) |  | $ | 946    |  
|                                              |  |                    |       |                  |                  |   |                  |  |   |                  |   |  |   |        |  

Note 12. Shareholders Equity

Other Comprehensive Income (Loss)

The components of other comprehensive income (loss), net of tax, are as
follows:



|                                                                                    |  |                    |         |   |                  |   |        |                  |  |   |                   |   |  |   |         |  
|----------------------------------------------------------------------------------- |  | ------------------ | ------- | - | ---------------- | - | ------ | ---------------- |  | - | ----------------- | - |  | - | ------- | -
|                                                                                    |  | Three Months Ended |         |   | Six Months Ended |  
|                                                                                    |  | June 27,    2009   |         |   | June 28,    2008 |   |        | June 27,    2009 |  |   | June 28,    2008  |  
|                                                                                    |  | (In thousands)     |        
|Net income (loss)                                                                   |  | $                  | (50,008 | ) |                  | $ | (2,385 | )                |  | $ | (116,400          | ) |  | $ | 13,144  |  
|Cumulative effect of adopting FSP 115-2                                             |  |                    | (3,491  | ) |                  |   |       |                  |  |   | (3,491            | ) |  |   |        |  
|Other comprehensive income (loss):                                                  |  |                    |         |   |                  |   |        |                  |  |   |                   |   |  |   |         |  
|Foreign currency translation adjustments                                            |  |                    | 829     |   |                  |   | (2,498 | )                |  |   | 518               |   |  |   | 3,132   |  
|Unrealized gain (loss) on investments  temporary                                   |  |                    | 4,831   |   |                  |   | (2,107 | )                |  |   | 5,639             |   |  |   | (7,561  | )
|Change in cash flow hedges                                                          |  |                    | (22     | ) |                  |   | 2,602  |                  |  |   | 436               |   |  |   | 2,919   |  
|Unrealized gain (loss) on minimum pension liability adjustment                      |  |                    |        |   |                  |   | 9      |                  |  |   | 87                |   |  |   | (22     | )
|                                                                                    |  |                    |         |   |                  |   |        |                  |  |   |                   |   |  |   |         |  
|Comprehensive income (loss)                                                         |  | $                  | (47,861 | ) |                  | $ | (4,379 | )                |  | $ | (113,211          | ) |  | $ | 11,612  |  
|                                                                                    |  |                    |         |   |                  |   |        |                  |  |   |                   |   |  |   |         |  
|                                                                                    | 
|The components of accumulated other comprehensive loss, net of tax, are as follows: |  |                    |         |   |                 
|                                                                                    |  |                    |         |  
|                                                                                    |  |                    |         |   |                  |   |        | June 27,    2009 |  |   | December 31, 2008 |  
|                                                                                    |  |                    |         |   |                  |   |        | (In thousands)   | 
|Foreign currency translation adjustments                                            |  |                    |         |   |                  |   |        |                  |  | $ | 1,523             |   |  | $ | 1,005   |  
|Unrealized gain (loss) on investments  temporary                                   |  |                    |         |   |                  |   |        |                  |  |   | (8,512            | ) |  |   | (10,660 | )
|Unrealized loss on cash flow hedges                                                 |  |                    |         |   |                  |   |        |                  |  |   | (701              | ) |  |   | (1,137  | )
|Unrealized loss on pension liability                                                |  |                    |         |   |                  |   |        |                  |  |   | (957              | ) |  |   | (1,044  | )
|                                                                                    |  |                    |         |   |                  |   |        |                  |  |   |                   |   |  |   |         |  
|Accumulated other comprehensive loss                                                |  |                    |         |   |                  |   |        |                  |  | $ | (8,647            | ) |  | $ | (11,836 | )
|                                                                                    |  |                    |         |   |                  |   |        |                  |  |   |                   |   |  |   |         |  

Common Stock Repurchases

The Board of Directors authorized the repurchase of outstanding common stock, including approvals of $1.0 billion on September 14, 2004 and another $1.0 billion on October 26, 2007. As of June 27, 2009,
we had $826.7 million available for stock repurchases under these authorizations. For the six months ended June 28, 2008, 6.3 million shares were repurchased under this plan for $145.0 million at a weighted average purchase price of
$23.11. No shares were repurchased under this plan during the six months ended June 27, 2009.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



For the majority of restricted stock units granted, the number of shares issued on the date
the restricted stock units vest is net of shares withheld to pay the minimum statutory withholding for income taxes on behalf of the grantee. Although shares withheld are not issued, they are treated as common stock repurchases because they reduce
the number of shares that would otherwise have been issued upon vesting. During the three and six months ended June 27, 2009, we withheld $1.8 million and $1.9 million, respectively, and during the three and six months ended June 28, 2008,
we withheld $0.1 million and $0.2 million, respectively, in shares to satisfy the minimum statutory withholding requirement related to the grantees tax obligations.

Note 13. Litigation

Linear Technology Corporation

In March 2002, Linear Technology Corporation (Linear) filed a complaint against Novellus, among other parties, in the Superior Court of the State of California for the
County of Santa Clara. The complaint seeks damages (including punitive damages), declaratory relief and injunctions for causes of action involving alleged breach of contract, fraud, unfair competition and breach of warranty. The Superior Court
dismissed Linears claims for fraud and unfair competition on October 5, 2004. The Court of Appeal affirmed this dismissal on June 18, 2007. Trial on the remaining claims is currently set for September 8,
2009. At this time, we cannot predict the ultimate outcome of this case, nor can we estimate a range of potential loss, if any. However, we believe that the ultimate disposition of these matters will not have a material adverse effect on our
business, financial condition or operating results.

Other Litigation

We are a defendant or plaintiff in various actions that have arisen in the normal course of business. We believe that the ultimate disposition of these matters will not have a material adverse effect on our business,
financial condition or results of operations. However, due to the uncertainty surrounding litigation, we are unable at this time to estimate a range of loss, if any, that may result from any of these pending proceedings.

Note 14. Income Taxes

Our benefit from income taxes for the three
months ended June 27, 2009 and June 28, 2008 was $4.5 million and $4.1 million, respectively. The change in the benefit for income taxes from the three months ended June 28, 2008 is primarily a result of the increase in our current
period pre-tax loss compared to the prior period, along with the changes in geographical mix of those losses. For the six months ended June 27, 2009 and June 28, 2008, we recorded provisions of $9.8 million and $8.8 million, respectively.
The increase in the provision for income taxes from the six months ended June 28, 2008 is primarily due to a charge of $19.4 million further discussed below. The impact of this charge is offset by changes in our current year-to-date pre-tax
loss compared to 2008 pre-tax income, along with the geographical mix of those losses in the current year.

On February 20, 2009, the California
Budget Act of 2008 was signed into law which revised certain provisions of the California State Tax Code, including the option to elect an alternative method to attribute taxable income to California for tax years beginning on or after
January 1, 2011. We expect that in years 2011 and beyond, our income subject to tax in California will be lower than under prior tax law and that our California deferred tax assets are therefore less likely to be realized. As a result, we
recorded a $19.4 million charge in the first quarter of 2009 to reduce our previously recognized California deferred tax assets.

Because our projected tax
rate is unusually volatile, the provision for income taxes in our Condensed Consolidated Statements of Operations reflects our actual effective tax rate for the three and six months ended June 27, 2009. We believe our year-to-date tax provision
for income taxes is the most reliable estimate of our annual effective tax rate. The effective income tax rate for the current fiscal year will likely be different from the tax rate in effect for the three and six months ended June 27, 2009 and
could be considerably higher or lower, depending largely on our operating results before taxes and the geographic mix of income (loss) for the year.



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



Note 15. Stock-Based Compensation

The following table summarizes the stock-based compensation expense related to stock options, restricted stock and our employee stock purchase plan (ESPP) included in our
Condensed Consolidated Statements of Operations:



|                                       |  |                    |       |                  |   |                  |  |                  |        |  |   |       
|-------------------------------------- |  | ------------------ | ----- | ---------------- | - | ---------------- |  | ---------------- | ------ |  | - | ------
|                                       |  | Three Months Ended |       | Six Months Ended
|                                       |  | June 27,    2009   |       | June 28,    2008 |   | June 27,    2009 |  | June 28,    2008
|                                       |  | (In thousands)    
|                                       |  | (1)                |       | (2)              |   | (1)              |  | (2)             
|Cost of sales                          |  | $                  | 647   |                  | $ | 799              |  | $                | 1,507  |  | $ | 1,417 
|Selling, general and administrative    |  |                    | 5,701 |                  |   | 5,253            |  |                  | 10,206 |  |   | 10,508
|Research and development               |  |                    | 2,155 |                  |   | 2,422            |  |                  | 4,467  |  |   | 4,972 
|                                       |  |                    |       |                  |   |                  |  |                  |        |  |   |       
|Total stock-based compensation expense |  | $                  | 8,503 |                  | $ | 8,474            |  | $                | 16,180 |  | $ | 16,897
|                                       |  |                    |       |                  |   |                  |  |                  |        |  |   |       



|(1) | Amounts include amortization expense related to stock options of $3.7 million and $7.2 million, ESPP of $0.2 million and $0.9 million, and restricted stock awards of $4.6 million
and $8.1 million for the three and six months ended June 27, 2009, respectively. The related income tax benefit recognized in the Condensed Consolidated Statements of Operations was $2.2 million and $3.9 million for the three and six months
ended June 27, 2009, respectively.
|--- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------



|(2) | Amounts include amortization expense related to stock options of $4.4 million and $8.8 million, ESPP of $0.6 million and $1.4 million, and restricted stock awards of $3.5 million
and $6.7 million for the three and six months ended June 28, 2008, respectively. The related income tax benefit recognized in the Condensed Consolidated Statements of Operations was $2.2 million and $4.4 million for the three and six months
ended June 28, 2008, respectively.
|--- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Stock Options

The exercise price of each stock option equals the market price of our common stock on the date of grant. Stock options generally vest ratably over a four-year period on the anniversary date of the grant and expire
ten years after the grant date. The fair values of stock options were estimated using the Black-Scholes valuation model with the following weighted-average assumptions:



|                        |  |                    |  |                  |  |                  |  |                 
|----------------------- |  | ------------------ |  | ---------------- |  | ---------------- |  | ----------------
|                        |  | Three Months Ended |  | Six Months Ended
|                        |  | June 27,    2009   |  | June 28,    2008 |  | June 27,    2009 |  | June 28,    2008
|Risk-free interest rate |  | 1.9%               |  | 2.9%             |  | 1.7%             |  | 2.7%            
|Volatility              |  | 56%                |  | 51%              |  | 57%              |  | 51%             
|Expected term           |  | 4.0 years          |  | 4.3 years        |  | 4.0 years        |  | 4.3 years       
|Dividends               |  | None               |  | None             |  | None             |  | None            

Our computation of volatility is based on a combination of historical and market-based implied volatility. Our
computation of expected term is based on historical exercise patterns. We base the risk-free interest rate on the implied yield in effect at the time of option grant on U.S. Treasury zero-coupon issues with remaining terms equivalent to the expected
term of the option.

A summary of stock option activity for the six months ended June 27, 2009 is as follows:



|                                           |  |                 |   |  |                                |       |                                          |      |                          |   |      
|------------------------------------------ |  | --------------- | - |  | ------------------------------ | ----- | ---------------------------------------- | ---- | ------------------------ | - | -----
|                                           |  | Number ofShares |   |  | Weighted-AverageExercise Price |       | Weighted-AverageRemainingContractualTerm |      | AggregateIntrinsic Value
|                                           |  | (In thousands)  |   |  |                                |       | (In years)                               |      | (In thousands)          
|Outstanding, beginning of period           |  | 20,927          |   |  | $                              | 30.35 |                                          |      |                          |   |      
|Grants                                     |  | 64              |   |  |                                | 15.95 |                                          |      |                          |   |      
|Exercises                                  |  | (30             | ) |  |                                | 17.94 |                                          |      |                          |   |      
|Forfeitures or expirations                 |  | (1,297          | ) |  |                                | 32.01 |                                          |      |                          |   |      
|                                           |  |                 |   |  |                                |       |                                          |      |                          |   |      
|Outstanding, end of period                 |  | 19,664          |   |  | $                              | 30.21 |                                          | 4.75 |                          | $ | 7,180
|                                           |  |                 |   |  |                                |       |                                          |      |                          |   |      
|Vested and expected to vest, end of period |  | 19,025          |   |  | $                              | 30.59 |                                          | 4.62 |                          | $ | 5,766
|Exercisable, end of period                 |  | 15,461          |   |  | $                              | 32.64 |                                          | 3.74 |                          | $ | 9    



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



The aggregate intrinsic value of options outstanding is calculated as the difference between
the exercise price of the underlying options and the market price of our common stock for the 1.9 million shares that had exercise prices lower than the market price of our common stock as of June 27, 2009. The aggregate intrinsic value of
options exercised, determined as of the date of exercise, was $0.1 million for each of the three and six months ended June 27, 2009 and $0.5 million and $0.6 million for the three and six months ended June 28, 2008, respectively. The total
cash received from employees as a result of stock option exercises was $0.5 million for each of the three and six months ended June 27, 2009 and $0.6 million and $0.9 million for the three and six months ended June 28, 2008, respectively.
The weighted-average grant date fair value of options granted was $7.58 and $7.21 for the three and six months ended June 27, 2009, respectively, and $10.03 and $10.06 for the three and six months ended June 28, 2008, respectively. In
connection with the disqualifying dispositions of incentive stock options and exercises of nonqualified stock options, we realized tax benefits of $0.1 million for each of the three and six months ended June 27, 2009 and tax benefits of $0.1
million for each of the three and six months ended June 28, 2008. We settle employee stock option exercises with newly issued common shares.

As of
June 27, 2009 there was $26.1 million of unrecognized compensation cost related to unvested stock options, of which $7.8 million is expected to be recognized in the two remaining quarters of 2009, and $11.5 million, $4.9 million, and $1.9
million is expected to be recognized in 2010, 2011 and 2012, respectively.

Restricted Stock Awards

Restricted stock awards include restricted stock and restricted stock units that are settled in common stock. Restricted stock awards generally vest over three, four, or
five-year periods, excluding certain awards that vest upon the achievement of specific performance targets. A summary of restricted stock award activity for the six months ended June 27, 2009 is as follows:



|                                                      |  |                 |   |  |                                      |      
|----------------------------------------------------- |  | --------------- | - |  | ------------------------------------ | -----
|                                                      |  | Number ofShares |   |  | Weighted-AverageGrant DateFair Value
|                                                      |  | (In thousands)  |   |  |                                     
|Unvested restricted stock awards, beginning of period |  | 3,399           |   |  | $                                    | 22.69
|Granted                                               |  | 137             |   |  |                                      | 15.64
|Vested                                                |  | (330            | ) |  |                                      | 29.70
|Forfeited                                             |  | (174            | ) |  |                                      | 23.13
|                                                      |  |                 |   |  |                                      |      
|Unvested restricted stock awards, end of period       |  | 3,032           |   |  | $                                    | 21.58
|                                                      |  |                 |   |  |                                      |      

The unvested restricted stock awards at June 27, 2009 include 2.2 million restricted stock units.

The total fair value of restricted stock awards that vested was $5.6 million and $5.9 million for the three and six months ended June 27, 2009,
respectively, and $1.1 million and $1.6 million for the three and six months ended June 28, 2008, respectively. In connection with the vesting of these awards, we realized tax benefits of $1.7 million and $1.8 million for the three and six
months ended June 27, 2009, respectively, and $0.4 million and $0.6 million for the three and six months ended June 28, 2008, respectively. As of June 27, 2009, there were a total of 0.9 million shares of restricted stock awards
subject to performance conditions that will result in forfeiture if the conditions are not met.

As of June 27, 2009 there was $25.0 million of
unrecognized compensation cost related to restricted stock awards, of which $6.4 million is expected to be recognized in the two remaining quarters of 2009, and $8.8 million, $7.2 million, $2.5 million and $0.1 million, is expected to be recognized
in 2010, 2011, 2012, and 2013, respectively.

Employee Stock Purchase Plan

Our ESPP allows qualified employees to purchase shares of common stock at 85 percent of the fair market value on specified dates. There were 0.3 million ESPP shares issued during each of the three months ended
June 27, 2009 and June 28, 2008. The fair values of ESPP were estimated using the Black-Scholes valuation model with the following weighted-average assumptions:



|                        |  |                    |  |                  |  |                  |  |             
|----------------------- |  | ------------------ |  | ---------------- |  | ---------------- |  | ------------
|                        |  | Three Months Ended |  | Six Months Ended
|                        |  | June 27,2009       |  | June 28,2008     |  | June 27,    2009 |  | June 28,2008
|Risk-free interest rate |  | 1.1%               |  | 2.6%             |  | 1.1%             |  | 3.3%        
|Volatility              |  | 49%                |  | 39%              |  | 49%              |  | 39%         
|Expected term           |  | 6 months           |  | 6 months         |  | 6 months         |  | 6 months    
|Dividends               |  | None               |  | None             |  | None             |  | None        



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NOVELLUS SYSTEMS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)



The weighted-average grant date fair value of shares issued was $4.53 for each of the three
and six months ended June 27, 2009 and $6.56 and $6.92 for the three and six months ended June 28, 2008, respectively. In connection with our ESPP, we realized tax benefits attributed to disqualifying dispositions of $0.2 million for
each of the three and six months ended June 27, 2009 and $0.1 million for each of the three and six months ended June 28, 2008. Our ESPP was suspended indefinitely effective May 1, 2009, the end of our most recent offering period, by
action of our Board of Directors. Further action by the Board of Directors will be required to reinstate our ESPP.

Note 16. Operating Segments

Our operations are organized into two segments, the Semiconductor Group and the Industrial Applications Group. The Semiconductor Group develops,
manufactures, sells and supports equipment used in the fabrication of integrated circuits, commonly called chips or semiconductors. The Industrial Applications Group is a supplier of lapping, grinding, polishing and deburring products for
fine-surface optimization. The accounting policies of these segments are the same as those described in Note 2 of our Consolidated Financial Statements included in our Annual Report on Form 10-K for the year ended December 31, 2008.

Segment information for the periods presented is as follows:



|                                |  |                                  |           |   |                                |   |         |              |  |   |                    |   |  |                             |           |   |              |   |         |   |  |   |           |  
|------------------------------- |  | -------------------------------- | --------- | - | ------------------------------ | - | ------- | ------------ |  | - | ------------------ | - |  | --------------------------- | --------- | - | ------------ | - | ------- | - |  | - | --------- | -
|                                |  | Three Months Ended June 27, 2009 |           |   | Six Months Ended June 27, 2009 |  
|                                |  | SemiconductorGroup               |           |   | IndustrialApplicationsGroup    |   |         | Consolidated |  |   | SemiconductorGroup |   |  | IndustrialApplicationsGroup |           |   | Consolidated |  
|                                |  | (In thousands)                   |          
|Sales to unaffiliated customers |  | $                                | 103,987   |   |                                | $ | 15,221  |              |  | $ | 119,208            |   |  | $                           | 180,565   |   |              | $ | 37,556  |   |  | $ | 218,121   |  
|Operating loss                  |  | $                                | (47,221   | ) |                                | $ | (10,163 | )            |  | $ | (57,384            | ) |  | $                           | (95,712   | ) |              | $ | (15,051 | ) |  | $ | (110,763  | )
|                                |  |                                 
|                                |  | Three Months Ended June 28, 2008 |           |   | Six Months Ended June 28, 2008 |  
|                                |  | SemiconductorGroup               |           |   | IndustrialApplicationsGroup    |   |         | Consolidated |  |   | SemiconductorGroup |   |  | IndustrialApplicationsGroup |           |   | Consolidated |  
|                                |  | (In thousands)                   |          
|Sales to unaffiliated customers |  | $                                | 208,272   |   |                                | $ | 49,468  |              |  | $ | 257,740            |   |  | $                           | 478,622   |   |              | $ | 93,831  |   |  | $ | 572,453   |  
|Operating income (loss)         |  | $                                | (20,814   | ) |                                | $ | 9,432   |              |  | $ | (11,382            | ) |  | $                           | 1,023     |   |              | $ | 14,866  |   |  | $ | 15,889    |  
|                                |  |                                 
|                                |  | June 27, 2009                    |           |   | December 31, 2008              |  
|                                |  | SemiconductorGroup               |           |   | IndustrialApplicationsGroup    |   |         | Consolidated |  |   | SemiconductorGroup |   |  | IndustrialApplicationsGroup |           |   | Consolidated |  
|                                |  | (In thousands)                   |          
|Total assets                    |  | $                                | 1,391,901 |   |                                | $ | 109,515 |              |  | $ | 1,501,416          |   |  | $                           | 1,506,782 |   |              | $ | 130,745 |   |  | $ | 1,637,527 |  

Note 17. Related Party Transactions

We lease an aircraft from NVLS I, LLC, a third-party entity wholly owned by Richard S. Hill, our Chairman and Chief Executive Officer. Under the aircraft lease agreement, we incurred lease expenses of $0.2 million and
$0.4 million for the three and six months ended June 27, 2009, respectively, and $0.3 million and $0.5 million for the three and six months ended June 28, 2008, respectively.

Novellus employs, in non-executive positions, certain immediate family members of our executive officers. The aggregate compensation amount recognized for these immediate family members was $0.2 million and $0.3
million for the three and six months ended June 27, 2009, respectively, and $0.1 million and $0.2 million for the three and six months ended June 28, 2008, respectively.

We have outstanding loans to non-executive vice presidents and other key personnel. As of June 27, 2009 and December 31, 2008, the total outstanding balance of such loans was $0.7 million and $0.9 million,
respectively. As of June 27, 2009, nearly all of the outstanding balance was secured by collateral. Loans typically bear interest, except for those made for employee relocation purposes. Bad debt expense related to these types of loans has not
historically been significant.



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##### Table of Contents

|ITEM 2: | MANAGEMENTS DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS
|------- | -------------------------------------------------------------------------------------

Cautionary Note Regarding Forward-Looking Statements

This Quarterly Report on Form 10-Q and certain information
incorporated herein by reference contain forward-looking statements within the safe harbor provisions of the Private Securities Litigation Reform Act of 1995. All statements included or incorporated by reference in this Quarterly Report,
other than statements that are purely historical, are forward-looking statements. Words such as anticipate, expect, intend, plan, believe, seek, estimate, and
similar expressions also identify forward-looking statements. The forward-looking statements include, without limitation: our belief that the impairment related to auction-rate securities is temporary; our intent to not sell our auction-rate
securities; our belief that we will not be required to sell our auction-rate securities before recovery; our expectation to recover the amortized cost basis of our auction-rate securities; our belief that we will ultimately be able to liquidate our
investments in auction-rate securities without significant loss through successful auctions, redemptions of securities by the issuers or upon maturity; our anticipation to reclassify the accumulated loss recorded as of June 27, 2009 for cash
flow hedges from OCI to net sales within twelve months; our expectation that the adoption of certain accounting pronouncements will not have a significant impact on our Condensed Consolidated Financial Statements; our estimated amortization expense
for currently recognized identifiable intangible assets in the for the two remaining quarters of 2009 and for the years ending December 31, 2010, 2011, 2012, 2013 and 2014, respectively; our expectation that the remaining obligations in
connection with vacated facilities will be satisfied no later than the expiration dates of the lease terms, which expire on various dates through 2017; our expectation that the ultimate disposition of the Linear litigation will not have a material
adverse effect on our business, financial condition or operating results; our expectation that in years 2011 and beyond our income subject to tax in California will be lower and that our deferred tax assets are less likely to be realized due to the
recent California tax law change; our plan to continue to assess our tax valuation allowance on our California deferred tax assets in future periods; that of the $26.1 million of unrecognized compensation cost related to unvested stock options, $7.8
million is expected to be recognized in the two remaining quarters of 2009, and $11.5 million, $4.9 million and $1.9 million is expected to be recognized in 2010, 2011 and 2012, respectively; our expectation that of the $25.0 million of unrecognized
compensation cost related to restricted stock awards, $6.4 million is expected to be recognized in the two remaining quarters of 2009 and $8.8 million, $ 7.2 million, $2.5 million and $0.1 million will be recognized in 2010, 2011, 2012 and
2013, respectively; our belief that significant investment in research and development is required to remain competitive; our plan to continue to invest in new products and enhance our current product lines; our intention to continue to seek legal
protection through patents and trade secrets for our proprietary technology; our efforts to continue to work closely with our customers and make substantial investments in research and development in order to deliver innovative products which
enhance productivity for our customers to utilize the latest technology; our belief that our continued investment in research and development has positioned us for future growth; our expectation that chip unit growth will resume in 2010 and beyond,
and with it, spending on semiconductor equipment; our anticipation that revenues in the near term will most likely be generated from technology upgrades rather than new capacity additions; our expectation that we will incur additional costs related
to consolidating our manufacturing operations in our Tualatin, Oregon facility; our expectation that net orders will fluctuate due to the cyclicality of the semiconductor industry; our continued focus on operational execution and paring down our
cost structure to improve operating results; our plan to continue managing both our variable and fixed cost structure with the objective of minimizing our net cash outflow during fiscal 2009; our belief that our current cash position and available
borrowing capacity will be sufficient to meet our needs through the next twelve months; our belief that the ultimate outcome of actions that have arisen in the normal course of business will not have a material adverse effect on our business,
financial condition or results of operations; our expectation that sales of our products to relatively few customers will continue to account for a high percentage of our net sales in the foreseeable future; our expectation that we will continue to
experience significant fluctuations in our quarterly operating results; our intention to use the proceeds from certain credit agreements for working capital and other general corporate purposes, including the repurchase of shares; and our intention
to repurchase shares from time to time in the open market, through block purchases or otherwise.



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##### Table of Contents

Our expectations, beliefs, objectives, intentions and strategies regarding the future, including, without limitation,
those concerning expected operating results, revenues and earnings and current and potential litigation are not guarantees of future performance and are subject to risks and uncertainties that could cause actual results to differ materially from
results contemplated by our forward-looking statements. These risks and uncertainties include, but are not limited to: unanticipated trends with respect to the cyclicality of the semiconductor industry; our inability to reclassify the accumulated
loss for our cash flow hedges from OCI to net sales within twelve months; inaccuracies regarding growth potential in the Asia region over the long term; a sustained decrease in or leveling off of customer demand; our inability to make adequate
inventory valuation adjustments in a timely manner; our inability to manage inventory levels; unexpected changes in the tax regulatory environment; changes in accounting and tax standards or practices; our inability to achieve a tax benefit due to
unexpected changes in domestic tax regulations; our inability to predict the ultimate outcome of the Linear litigation and other current litigation on our business, financial conditions or operating results; our inability to accurately predict the
impact of new accounting pronouncements on our Condensed Consolidated Financial Statements; our inability to accurately assess the period in which we will recognize unrecognized compensation related to unvested stock options and restricted stock
awards; inaccuracies related to the timing and satisfaction of remaining obligations related to vacated leases; unexpected shipment delays which adversely impact shipment volumes; our inability to meet certain performance conditions that may result
in forfeiture of certain restricted stock awards; unexpected increase in costs associated with manufacturing our products; our inability to anticipate cyclical changes in customers capacity utilization and demand; the negative impact of higher
cost of services on gross margins; our inability to realize efficiencies from outsourcing; inefficiencies in the allocation of funds towards our research and development efforts to our existing and new product lines; unexpected complications related
to timing, success and cost of our consolidation efforts; unexpected difficulties in introducing new and enhanced products in a timely manner in order to remain competitive; unexpected changing product needs of our customers; the loss of a major
customer; the need to seek new customers and diversify our customer base; unanticipated need for additional liquid assets in the next twelve months; inherent uncertainty in the outcome of litigation matters; our inability to enforce our patents and
protect our trade secrets; our inability to recover the carrying value of our investments in auction-rate securities, market changes negatively affecting auction-rate securities and the governments inability to guarantee the underlying
securities; our inability to accurately predict customers capital spending over the long term; further periodic downturns in the semiconductor industry which could have a material adverse effect on the semiconductor industrys demand for
semiconductor processing equipment; our inability to accurately predict mega-fabrication trends in memory manufacturing; uncertainties related to the acceptance of new technology into the memory market; the introduction of new products by
competitors; our inability to gain and leverage market position during the economic downturn; unexpected shifts in market demands for both memory and logic products; uncertainties related to growth in the electronic industry; and our inability to
successfully select, develop, and market new products, or enhance existing products.

The forward-looking statements in this Quarterly Report on Form 10-Q
are subject to additional risks and uncertainties set forth under the heading Risk Factors in Item 1A of Part II, and are based on information available to us on the date hereof. We assume no obligation to update any forward-looking
statements. Readers are cautioned not to place undue reliance on forward-looking statements, which speak only as of the date of the filing of this Quarterly Report on Form 10-Q. Readers should also review carefully the cautionary statements and risk
factors listed in our Annual Report on Form 10-K for the year ended December 31, 2008 and in our other filings with the SEC, including our Forms 10-Q and 8-K and our Annual Report to Shareholders.

Introduction

The following Managements Discussion and Analysis
of Financial Condition and Results of Operations (MD&A) is intended to provide readers with an understanding of our business. The following are included in our MD&A:



| |  |  | Overview of our Business and Industry;
| | - |  | --------------------------------------



| |  |  | Critical Accounting Policies;
| | - |  | -----------------------------



| |  |  | Results of Operations; and
| | - |  | --------------------------



| |  |  | Liquidity and Capital Resources.
| | - |  | --------------------------------

Overview of Our
Business and Industry

Novellus Systems, Inc. is a California corporation organized in 1984. At Novellus, we primarily develop, manufacture, sell and
support equipment used in the fabrication of integrated circuits, commonly called chips or semiconductors. Customers for these products manufacture chips for sale or for incorporation in their own products, or provide chip-manufacturing services to
third parties. The segment of our business serving this area is the Semiconductor Group. Beginning in 2004, Novellus entered into market segments beyond semiconductor manufacturing through various acquisitions. This segment, referred to as our
Industrial Applications Group, supports grinding, lapping and polishing equipment for fine-surface optimization and serves a broad spectrum of industrial applications.



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In the Semiconductor Group our business depends on capital expenditures made by integrated circuit manufacturers, who in
turn are dependent on corporate and consumer demand for integrated circuits and the electronic products which use them. Since the industry in which we operate is driven by spending for electronic products, our business is directly affected by growth
or contraction in the global economy as well as by the adoption of new technologies. Demand for personal computers, the expansion of the Internet and telecommunications industries and the emergence of new applications in consumer electronics have a
direct impact on our business. In addition, the industry is characterized by intense competition and rapidly changing technology. We continue to work closely with our customers and make substantial investments in research and development in order to
deliver innovative products which enhance productivity for our customers and utilize the latest technology. We believe these investments have positioned us for future growth.

In the Industrial Applications Group our business depends on capital expenditures made by manufacturers in sectors such as automotive, aircraft and electronic products, parts and components. At the broadest level, the
demand for machine tools is highly sensitive to macroeconomic conditions, as our customer base includes some of the most cyclically sensitive industries in the economy. As a result, such variables as the outlook for overall economic growth, fixed
investment and durable goods shipments directly affect the growth of our business. Our industrial business also depends on niche applications in addition to the general machine tool cycle. As we continue to expand our capabilities in this segment,
our operations are increasingly impacted by the prime wafer industry which, similar to the semiconductor segment, is also characterized by intense competition and rapidly changing technology.

As a supplier to the global semiconductor and semiconductor-related industries, we are subject to business cycles and trends which are difficult to predict. The demand
for our products is affected by the profitability of our customers which is driven by capacity and the market supply-demand balance for their products. Our customers operate principally in the semiconductor memory and logic markets. In fiscal 2006
and 2007, our memory customers grew capacity and those capacity additions outpaced the rate of demand, leading to declines in the average selling price of memory chips. This oversupply-driven weakness in the memory markets was rendered more severe
in the second half of 2008 by the contraction in demand for semiconductors due to the global economic crisis. Weak demand for memory semiconductors, combined with the general lack of capital availability, has restricted our customers spending
on capital equipment in 2009. Equipment purchases in the first half of 2009 have been focused on technology upgrades rather than new capacity additions, and we anticipate that this trend will continue into the second half of 2009. However, in
keeping with the historical cyclical nature of the industry, chip unit growth is expected to resume in 2010 and beyond, and with it, spending on semiconductor equipment.

Given the significant downward pressure on revenues, we continue to focus on operational execution and paring down our cost structure to improve operating results. We plan to continue managing both our variable and
fixed cost structure with the objective of minimizing our net cash outflow during fiscal 2009. In the second quarter of 2009, we incurred $13.0 million in additional charges related to reductions in workforce and a scaling back of our CMP
operations. Of these charges, $7.6 million was in cost of sales, $4.5 million was in selling, general and administrative expenses and $0.9 million was in research and development expenses. Additionally, in July 2009 we announced our plans to
consolidate our manufacturing operations in our Tualatin, Oregon facility. This move will take place throughout the remainder of 2009 and we expect to incur an additional costs ranging from $6 million to $10 million as a result.

We focus on certain key quarterly financial data to manage our business. Net sales, gross profit, net income and net income per share are the primary measures we use to
monitor performance. We also use certain non-GAAP measures, such as shipments and net orders, to assess business trends and performance. Shipments consist of products shipped to customers, without regard to net sales adjustments such as deferrals
associated with customer acceptance. Net orders, which are also referred to as bookings, consist of current period orders less current period cancellations and other adjustments. Net orders reported for the second quarter of 2009, the first quarter
of 2009 and the fourth quarter of 2008 were reduced by $8.0 million, $10.6 million and $44.9 million, respectively, due to customer cancellations and backlog adjustments based upon our assessment that certain customers may not be in a financial
position to take delivery within the next 12 months. Shipments and net orders are used to forecast and plan future operations. We do not report orders for systems with delivery dates more than 12 months from the latest balance sheet date.



24



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##### Table of Contents

The following table sets forth certain quarterly financial information for the periods indicated (in thousands, except
per share data and percentages):



|                                        |  |                          |         |   |              |   |         |               |  |   |              |    |  |               |         |    |              |   |         |    |  |   |         |   
|--------------------------------------- |  | ------------------------ | ------- | - | ------------ | - | ------- | ------------- |  | - | ------------ | -- |  | ------------- | ------- | -- | ------------ | - | ------- | -- |  | - | ------- | --
|                                        |  | Quarterly Financial Data |        
|                                        |  | 2009                     |         |   | 2008         |  
|                                        |  | SecondQuarter            |         |   | FirstQuarter |   |         | FourthQuarter |  |   | ThirdQuarter |    |  | SecondQuarter |         |    | FirstQuarter |  
|Net sales                               |  | $                        | 119,208 |   |              | $ | 98,913  |               |  | $ | 188,453      |    |  | $             | 250,098 |    |              | $ | 257,740 |    |  | $ | 314,713 |   
|Gross profit                            |  | $                        | 31,006  |   |              | $ | 25,738  |               |  | $ | 68,517       |    |  | $             | 111,524 |    |              | $ | 110,963 |    |  | $ | 144,940 |   
|Net income (loss)                       |  | $                        | (50,008 | ) |              | $ | (66,392 | )             |  | $ | (130,251     | )  |  | $             | 1,397   |    |              | $ | (2,385  | )  |  | $ | 15,529  |   
|Net income (loss) per share  Diluted   |  | $                        | (0.52   | ) |              | $ | (0.69   | )             |  | $ | (1.36        | )  |  | $             | 0.01    |    |              | $ | (0.02   | )  |  | $ | 0.15    |   
|Shipments                               |  | $                        | 119,982 |   |              | $ | 92,130  |               |  | $ | 175,635      |    |  | $             | 230,153 |    |              | $ | 240,319 |    |  | $ | 312,857 |   
|Change in shipments from prior quarter  |  |                          | 30      | % |              |   | (48     | )%            |  |   | (24          | )% |  |               | (4      | )% |              |   | (23     | )% |  |   | (14     | )%
|Net orders                              |  | $                        | 111,187 |   |              | $ | 77,795  |               |  | $ | 82,695       |    |  | $             | 202,765 |    |              | $ | 234,628 |    |  | $ | 297,025 |   
|Change in net orders from prior quarter |  |                          | 43      | % |              |   | (6      | )%            |  |   | (59          | )% |  |               | (14     | )% |              |   | (21     | )% |  |   | (13     | )%

We expect that net orders will continue to fluctuate due to the cyclical nature of our industry. The receipt of
net orders in a particular quarter affects revenue in subsequent quarters. Net orders result in revenue either at shipment and transfer of title or upon customer acceptance of the equipment. Our revenue recognition policy, as discussed in our Annual
Report on Form 10-K for the year ended December 31, 2008, addresses the distinction between the revenue recognized upon shipment and transfer of title and the revenue recognized upon customer acceptance. Equipment is generally shipped within
two to six months of receiving the related order and, if applicable, customer acceptance is typically received one to six months after shipment. These time lines are general estimates and actual times may vary depending on specific customer
circumstances.

Critical Accounting Policies

The
preparation of financial statements in conformity with U.S. GAAP requires that we make estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses and the related disclosure of contingent assets and
liabilities. On an ongoing basis, we evaluate our assumptions and estimates, including those related to recognition of revenue, valuation of inventory, valuation of goodwill and other intangible assets, valuation of deferred tax assets, adequacy of
warranty obligations, measurement of restructuring and impairment charges, compliance with hedge accounting for derivatives, measurement of stock-based compensation expense, valuation of investments, adequacy of the allowance for doubtful accounts
and adequacy of loss contingencies, including those related to legal matters. We base our estimates on historical experience and on various assumptions that are believed to be reasonable under the circumstances, the results of which form the basis
for making judgments about the carrying values of assets and liabilities that are not readily apparent from other sources. Actual results may differ from these estimates under different assumptions or conditions. We discuss our critical accounting
policies in Managements Discussion and Analysis of Financial Condition and Results of Operations in our Annual Report on Form 10-K for the year ended December 31, 2008. Except for the critical accounting policy set forth below entitled
Income Taxes, there have been no significant changes in our critical accounting policies or estimates since those reported in our Annual Report.

Income Taxes

Because our projected tax rate is unusually volatile, the provision for income taxes in our Condensed Consolidated
Statements of Operations reflects our actual effective tax rate for the three and six months ended June 27, 2009. We believe our year-to-date tax provision for income taxes is the most reliable estimate of our annual effective tax rate. The
effective income tax rate for the current fiscal year will likely be different from the tax rate in effect for the three and six months ended June 27, 2009 and could be considerably higher or lower, depending largely on our operating results
before taxes and the geographic mix of income (loss) for the year. Our future effective income tax rate also depends on other factors, such as tax legislation, non-deductible expenses incurred in connection with acquisitions and other discretely
recorded items, including interest expense on uncertain tax positions and deductions for compensation expense related to stock options and restricted stock.

As of June 27, 2009, we had approximately $95.7 million of net deferred tax assets. We currently believe all of our net deferred tax assets will be realized due to anticipated future income and our ability to carry back losses to prior
years. We have considered all sources of taxable income and ongoing prudent and feasible tax planning strategies in assessing the need for the valuation allowance. If, in the future, we determine that we will not be able to realize all or part of
our net deferred tax assets, a valuation allowance for deferred tax assets would decrease income in the period in which such determination is made. If market conditions change significantly within the next 12 months then it is reasonably possible
that our valuation allowance will change.



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##### Table of Contents

Results of Operations

Net Sales



|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  |                    |         |   |                   |   |        |                  |  |   |                  |   |  |                  |         |   |  |   |         |  
|-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |  | ------------------ | ------- | - | ----------------- | - | ------ | ---------------- |  | - | ---------------- | - |  | ---------------- | ------- | - |  | - | ------- | -
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | Three Months Ended |         |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | June 27,    2009   |         |   | March 28,    2009 |   |        | June 28,    2008 |  |   | June 27,    2009 |   |  | June 28,    2008 |        
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | (In thousands)     |         |   |                   |   |        |                  | 
|Semiconductor Group                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  |  | $                  | 103,987 |   |                   | $ | 76,579 |                  |  | $ | 208,272          |   |  | $                | 180,565 |   |  | $ | 478,622 |  
|Industrial Applications Group                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  |                    | 15,221  |   |                   |   | 22,334 |                  |  |   | 49,468           |   |  |                  | 37,556  |   |  |   | 93,831  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  |                    |         |   |                   |   |        |                  |  |   |                  |   |  |                  |         |   |  |   |         |  
|Net sales                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            |  | $                  | 119,208 |   |                   | $ | 98,913 |                  |  | $ | 257,740          |   |  | $                | 218,121 |   |  | $ | 572,453 |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
|The net sales we report are correlated to shipments and the timing of customer acceptance. Deferred revenue at the end of the second
quarter of 2009 was $43.8 million.  Semiconductor net sales for the second quarter of
2009 increased by 36% compared to the first quarter of 2009 due to higher demand and restocking of depleted inventory levels in the electronics markets following historically low levels of semiconductor industry sales in the first quarter of 2009.
Semiconductor net sales for the second quarter of 2009 are down 50% quarter-to-date and 62% year-to-date compared to the same periods in the prior year as a result of ongoing weakness in the overall economy and the semiconductor industry.
 IAG net sales for the second quarter of 2009 and for the six months ended June 27, 2009,
have declined substantially compared to the first quarter of 2009 and the same periods in the prior year. These declines are primarily due to decreased demand for our industrial products as a direct result of deterioration in the global economy.  Geographical net sales as a percentage of total net sales were as follows (based upon
the location of our customers facilities): | 
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | Three Months Ended |         |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | June 27,    2009   |         |   | March 28,    2009 |   |        | June 28,  2008   |  |   | June 27,    2009 |   |  | June 28,    2008 |        
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | (In thousands)     |         |   |                   |   |        |                  | 
|Asia                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 |  |                    | 54%     |   |                   |   | 31%    |                  |  |   | 61%              |   |  |                  | 44%     |   |  |   | 62%     |  
|North America                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  |                    | 32%     |   |                   |   | 47%    |                  |  |   | 27%              |   |  |                  | 39%     |   |  |   | 28%     |  
|Europe                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               |  |                    | 14%     |   |                   |   | 22%    |                  |  |   | 12%              |   |  |                  | 17%     |   |  |   | 10%     |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  |                    |         |   |                  
|Gross Profit                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         |  |                    |         |   |                   |   |        |                  |  |   |                  |   |  |                  |         |   |  |   |         |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | Three Months Ended |         |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | June 27,    2009   |         |   | March 28,    2009 |   |        | June 28,    2008 |  |   | June 27,    2009 |   |  | June 28,    2008 |        
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | (In thousands)     |         |   |                   |   |        |                  | 
|Gross profit                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         |  | $                  | 31,006  |   |                   | $ | 25,738 |                  |  | $ | 110,963          |   |  | $                | 56,744  |   |  | $ | 255,903 |  
|Gross margin                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         |  |                    | 26      | % |                   |   | 26     | %                |  |   | 43               | % |  |                  | 26      | % |  |   | 45      | %
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
|Second quarter 2009 gross margin of 26% was consistent with the first quarter of 2009. The decline in gross margin for the three and six
months ended June 27, 2009 compared to the same periods in the prior year is primarily due to reduced absorption of fixed overhead costs on lower shipment volumes. 
Selling, General and Administrative (SG&A)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             | 
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | Three Months Ended |         |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | June 27,    2009   |         |   | March 28,    2009 |   |        | June 28,    2008 |  |   | June 27,    2009 |   |  | June 28,    2008 |        
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     |  | (In thousands)     |         |   |                   |   |        |                  | 
|SG&A expense                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         |  | $                  | 46,128  |   |                   | $ | 42,789 |                  |  | $ | 61,488           |   |  | $                | 88,917  |   |  | $ | 121,817 |  
|% of net sales                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       |  |                    | 39      | % |                   |   | 43     | %                |  |   | 24               | % |  |                  | 41      | % |  |   | 21      | %

SG&A expense includes compensation and benefits for corporate, financial, marketing, sales and administrative
personnel as well as travel expenses and professional service fees. Also included are expenses for rents, utilities, and depreciation and amortization related to the assets utilized by these functions.



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Second quarter 2009 SG&A expense increased $3.3 million from the first quarter of 2009 due to higher costs related to
reductions in workforce. Significant decreases in SG&A expense for the three and six months ended June 27, 2009 compared to the same periods in the prior year are due to lower headcount and a continued focus on reducing operating expenses.
However, SG&A expense as a percentage of net sales increased compared to prior year periods primarily due to the decline in net sales.

Research
and Development (R&D)



|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  |                    |        |   |                   |   |             |                  |  |   |                  |   |  |                  |        |   |  |   |             |  
|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |  | ------------------ | ------ | - | ----------------- | - | ----------- | ---------------- |  | - | ---------------- | - |  | ---------------- | ------ | - |  | - | ----------- | -
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | Three Months Ended |        |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | June 27,    2009   |        |   | March 28,    2009 |   |             | June 28,    2008 |  |   | June 27,    2009 |   |  | June 28,    2008 |       
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | (In thousands)     |        |   |                   |   |             |                  | 
|R&D expense                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             |  | $                  | 39,341 |   |                   | $ | 36,015      |                  |  | $ | 59,815           |   |  | $                | 75,356 |   |  | $ | 117,155     |  
|% of net sales                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          |  |                    | 33     | % |                   |   | 36          | %                |  |   | 23               | % |  |                  | 35     | % |  |   | 20          | %
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
|R&D expense includes compensation and benefits for our R&D personnel, project materials, chemicals and other direct expenses
incurred in product and technology development. Also included are expenses for equipment repairs and maintenance, rents, utilities and depreciation related to product and technology development. Our significant investments in R&D over the past
several years reflect our strong commitment to the continuous improvement of our current product lines and the development of new products and technologies. We continue to believe that significant investment in R&D is required to remain
competitive, and we plan to continue to invest in new products and enhancement of our current product lines.  Second quarter 2009 R&D expense increased $3.3 million from the first quarter of 2009 due to a planned increase of R&D project spending. Significant decreases in R&D expense for the three and six months
ended June 27, 2009 compared to the same periods in the prior year are due to lower headcount and a continued focus on reducing operating expenses. However, R&D expense as a percentage of net sales increased compared to prior year periods
primarily due to the decline in net sales.  Restructuring
Charges | 
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | Three Months Ended |        |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | June 27,    2009   |        |   | March 28,    2009 |   |             | June 28,    2008 |  |   | June 27,    2009 |   |  | June 28,    2008 |       
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | (In thousands)     |        |   |                   |   |             |                  | 
|Restructuring charges                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   |  | $                  | 2,921  |   |                   | $ | 313         |                  |  | $ | 1,042            |   |  | $                | 3,234  |   |  | $ | 1,042       |  
|% of net sales                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          |  |                    | 2      | % |                   |   | Less than 1 | %                |  |   | Less than 1      | % |  |                  | 1      | % |  |   | Less than 1 | %
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
|For the three and six months ended June 27, 2009, we incurred $2.9 million and $3.2 million, respectively, in additional
restructuring charges resulting from changes in estimates of future sublease income for facility exit activities recorded in prior years.  Interest and Other Income, Net                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      | 
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  |                   
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | Three Months Ended |        |   | Six Months Ended  |  
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | June 27,    2009   |        |   | March 28,    2009 |   |             | June 28,    2008 |  |   | June 27,    2009 |   |  | June 28,    2008 |       
|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |  | (In thousands)     |        |   |                   |   |             |                  | 
|Interest and other income, net                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          |  | $                  | 2,906  |   |                   | $ | 1,296       |                  |  | $ | 4,916            |   |  | $                | 4,202  |   |  | $ | 6,025       |  
|% of net sales                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          |  |                    | 2      | % |                   |   | 1           | %                |  |   | 2                | % |  |                  | 2      | % |  |   | 1           | %

Interest and other income, net, includes interest income, interest expense and other non-operating items. Interest
and other income, net was $2.9 million in the second quarter of 2009 compared to $1.3 million in the first quarter of 2009. This increase is primarily due to unrealized gains on certain other investments of $1.2 million compared to unrealized losses
of $0.5 million in the prior quarter as a result of improved market conditions. Interest and other income, net decreased in the second quarter of 2009 versus the same period in the prior year due to unfavorable changes in foreign exchange rates
compared to a year ago. The decrease in the 2009 year-to-date period compared to the same period in the prior year is due to lower interest income, as interest rates have declined compared to the prior year.



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Income Taxes



|                                          |  |                    |        |   |                  |   |        |              |  |   |              |   |  |              |       |    |  |   |       |  
|----------------------------------------- |  | ------------------ | ------ | - | ---------------- | - | ------ | ------------ |  | - | ------------ | - |  | ------------ | ----- | -- |  | - | ----- | -
|                                          |  | Three Months Ended |        |   | Six Months Ended |  
|                                          |  | June 27,2009       |        |   | March 28,2009    |   |        | June 28,2008 |  |   | June 27,2009 |   |  | June 28,2008 |      
|                                          |  | (In thousands)     |        |   |                  |   |        |              | 
|Provision for (benefit from) income taxes |  | $                  | (4,470 | ) |                  | $ | 14,309 |              |  | $ | (4,081       | ) |  | $            | 9,839 |    |  | $ | 8,770 |  
|% of income (loss) before income taxes    |  |                    | 8      | % |                  |   | (27    | )%           |  |   | 63           | % |  |              | (9    | )% |  |   | 40    | %

Our benefit from income taxes for the three months ended June 27, 2009 was $4.5 million compared to a
provision of $14.3 million for the three months ended March 28, 2009 and a benefit of $4.1 million for the three months ended June 28, 2008. We recorded a tax charge of $19.4 million in the first quarter of 2009 as described below, which
impacted the typical relationship between pre-tax loss and the provision for (benefit from) income taxes for three months ended March 28, 2009 and six months ended June 27, 2009. Excluding this charge, we had effective tax rates of 8
percent, 10 percent and 63 percent for the three months ended June 27, 2009, March 28, 2009 and June 28, 2008, respectively, and effective tax rates of 9 percent and 40 percent for the six months ended June 27, 2009 and
June 28, 2008. These fluctuations result from changes in our operating results before income taxes, along with the geographical mix of those results between periods.

On February 20, 2009, the California Budget Act of 2008 was signed into law which revised certain provisions of the California State Tax Code, including the option to elect an alternative method to attribute
taxable income to California for tax years beginning on or after January 1, 2011. We now expect that in years 2011 and beyond, our income subject to tax in California will be lower than under prior tax law and that our California deferred tax
assets are therefore less likely to be realized. As a result, we recorded a $19.4 million charge in the first quarter of 2009 to reduce our previously recognized California deferred tax assets.

Liquidity and Capital Resources

Cash, Cash Equivalents and
Short-Term Investments



|                                                        |  |                |         |                  |   |        
|------------------------------------------------------- |  | -------------- | ------- | ---------------- | - | -------
|                                                        |  | June 27,2009   |         | December 31,2008
|                                                        |  | (In thousands)
|Cash and cash equivalents                               |  | $              | 190,698 |                  | $ | 184,332
|Short-term investments                                  |  |                | 285,600 |                  |   | 286,556
|                                                        |  |                |         |                  |   |        
|Total cash, cash equivalents and short-term investments |  | $              | 476,298 |                  | $ | 470,888
|                                                        |  |                |         |                  |   |        

We have historically financed our operating and capital resource requirements through cash flows from operations,
sales of equity securities and borrowings. Our primary source of liquidity as of June 27, 2009 consisted of $476.3 million of cash, cash equivalents and short-term investments, an increase of $5.4 million from December 31, 2008.

Restricted Cash, Cash Equivalents and Long-Term Investments



|                                                                     |  |                |         |                  |   |        
|-------------------------------------------------------------------- |  | -------------- | ------- | ---------------- | - | -------
|                                                                     |  | June 27,2009   |         | December 31,2008
|                                                                     |  | (In thousands)
|Restricted cash and cash equivalents                                 |  | $              | 137,792 |                  | $ | 119,702
|Long-term investments                                                |  |                | 85,615  |                  |   | 91,873 
|                                                                     |  |                |         |                  |   |        
|Total restricted cash and cash equivalents and long-term investments |  | $              | 223,407 |                  | $ | 211,575
|                                                                     |  |                |         |                  |   |        

We held $223.4 million in restricted cash and long-term investments as of June 27, 2009, an increase of $11.8
million from $211.6 million as of December 31, 2008. Our restricted cash and cash equivalents primarily represent collateral for our long-term debt obligations and are deposited in money market funds with our lender.

Long-term investments relate to tax-exempt auction-rate securities, whose underlying assets are either student loans substantially backed by the federal government or
closed-end municipal funds. Auction-rate securities include auction-rate notes and auction-rate preferred shares of tax-exempt closed-end municipal funds. Our auction-rate notes consist of student loans that are substantially backed by the federal
government. Due to auction failures in the marketplace, we will not have access to these funds unless (a) future auctions are successful, (b) the securities are called by the issuer, (c) we sell the securities in a secondary market,
or (d) the underlying



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notes mature. Currently, there are no active secondary markets. As of June 27, 2009 we have recorded a cumulative temporary unrealized impairment loss
of $12.5 million within other comprehensive income in our Condensed Consolidated Financial Statements as of June 27, 2009. We believe that this impairment is temporary as we do not intend to sell these securities, we will not be required to
sell these securities before recovery and we expect to recover the amortized cost basis of these securities. During the three and six months ended June 27, 2009, we redeemed $7.9 million and $10.2 million, respectively, of our auction-rate
securities at amortized cost.

Cash Flow Summary



|                                                              |  |                  |         |   |              |   |          |  
|------------------------------------------------------------- |  | ---------------- | ------- | - | ------------ | - | -------- | -
|                                                              |  | Six Months Ended |        
|                                                              |  | June 27,2009     |         |   | June 28,2008 |  
|                                                              |  | (In thousands)   |        
|Net cash provided by (used in):                               |  |                  |         |   |              |   |          |  
|Operating activities                                          |  | $                | 18,455  |   |              | $ | 125,174  |  
|Investing activities                                          |  |                  | (16,186 | ) |              |   | 45,285   |  
|Financing activities                                          |  |                  | 3,162   |   |              |   | (154,434 | )
|Effects of exchange rate changes on cash and cash equivalents |  |                  | 935     |   |              |   | 677      |  
|                                                              |  |                  |         |   |              |   |          |  
|Net increase in cash and cash equivalents                     |  | $                | 6,366   |   |              | $ | 16,702   |  
|                                                              |  |                  |         |   |              |   |          |  

Operating

Net
cash provided by operating activities during the six months ended June 27, 2009 was $18.5 million. Our net loss of $116.4 million was offset by $54.3 million in non-cash expense items and $80.6 million in favorable working capital changes. The
primary drivers impacting working capital were a decrease in accounts receivable, net of $47.5 million due to decreased shipment volumes compared to year end and a reduction in inventories of $49.4 million as a result of continued focus on
optimizing inventory levels.

Net cash provided by operating activities during the six months ended June 28, 2008 was $125.2 million. This amount
consisted primarily of $13.1 million provided by net income, adjusted for non-cash expense items of $63.9 million and favorable working capital changes of $48.2 million.

Investing

Net cash used in investing activities during the six months ended June 27, 2009 was $16.2 million.
This amount consisted of an increase in restricted cash and cash equivalents of $18.1 million, capital expenditures of $7.4 million and an intangible asset purchase of $2.0 million. These increases were offset by net proceeds from investments of
$10.0 million and proceeds from the sale of property and equipment of $1.3 million. As of June 27, 2009, we had no significant commitments to purchase property or equipment.

Net cash provided by investing activities during the six months ended June 28, 2008 was $45.3 million, which consisted of net proceeds from investments of $65.0 million, offset by capital expenditures of $10.9
million and an increase in restricted cash and cash equivalents of $8.8 million.

Financing

Net cash provided by financing activities during the three months ended June 27, 2009 was $3.2 million primarily as a result of proceeds from employee stock
compensation plans of $4.3 million, offset by common stock repurchases of $1.9 million. We also refinanced our previous debt obligation of $110.6 million during the second quarter of 2009. See further discussion below.

Net cash used in financing activities during the six months ended June 28, 2008 was $154.4 million. This amount consisted primarily of repurchases of common stock
of $160.2 million, offset by proceeds from employee stock compensation plans of $5.7 million.

Credit Arrangements

We have short-term credit facilities with various financial institutions totaling $47.4 million. These credit facilities bear interest at various rates and expire on
various dates through March 2010. As of June 27, 2009, $1.9 million of current obligations were outstanding at an average interest rate of 5.0%, $8.2 million was pledged against outstanding letters of credit and the remaining $37.3 million was
unutilized.



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On June 17, 2009, we entered into a three-year Credit Agreement (the Agreement) with Bank of America,
N.A. The Agreement established a secured credit line with an aggregate committed maximum amount of 80 million Euros at an interest rate of EURIBOR plus 75 basis points, the outstanding balance of which is due and payable on or before
June 22, 2012. Upon execution of the Agreement, we borrowed 79.5 million Euros against this credit line. The proceeds of the loan were used to retire our credit facility with JPMorgan Chase Bank, which was due and payable on June 25,
2009. The JPMorgan Credit Agreement was used to fund the acquisition of Peter Wolters AG in June of 2004 and for general corporate purposes. As of June 27, 2009, we had amounts outstanding of $111.2 million at an effective interest rate of
1.8%, secured by deposits in money market funds at 115 percent of the outstanding balance. The Agreement contains a financial covenant with which we were in compliance as of June 27, 2009.

We terminated our $150.0 million senior unsecured revolving credit facility on April 21, 2009 and did not incur any penalties related to the termination. We had no
amounts available or outstanding under this facility as of the termination date.

We believe that our financial resources will be sufficient to meet our
needs through the next 12 months.



|ITEM 3: | QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK
|------- | ----------------------------------------------------------

For
quantitative and qualitative disclosures about market risk affecting Novellus, see Item 7A: Quantitative and Qualitative Disclosures about Market Risk in our Annual Report on Form 10-K for the fiscal year ended December 31,
2008. Our exposure related to market risk has not changed materially since December 31, 2008.



|ITEM 4: | CONTROLS AND PROCEDURES
|------- | -----------------------

Quarterly Evaluation of Our
Disclosure Controls and Internal Controls

As of the end of the period covered by this Quarterly Report on Form 10-Q, we evaluated the effectiveness
of the design and operation of our disclosure controls and procedures and our internal controls and procedures for financial reporting. This control evaluation was done under the supervision and with the participation of management, including our
Chief Executive Officer and Principal Financial Officer. Rules adopted by the SEC require that, in this section of the Quarterly Report on Form 10-Q, we present the conclusions of the Chief Executive Officer and the Principal Financial Officer about
the effectiveness of our disclosure controls and internal controls for financial reporting based on and as of the date of the controls evaluation.

CEO and PFO Certifications

The certifications of the Chief Executive Officer and the Principal Financial Officer required in
accordance with Section 302 of the Sarbanes-Oxley Act of 2002 are filed as exhibits to this Quarterly Report on Form 10-Q. This section of the Quarterly Report on Form 10-Q is the information concerning the controls evaluation referred to in
the Section 302 certifications and this information should be read in conjunction with the Section 302 certifications for a more complete understanding of the topics presented.

Disclosure Controls and Internal Controls for Financial Reporting

Disclosure controls are procedures that are
designed with the objective of ensuring that information required to be disclosed in our reports filed under the Exchange Act such as this Quarterly Report on Form 10-Q, is recorded, processed, summarized and reported within the time periods
specified in the SECs rules and forms. Disclosure controls are also designed with the objective of ensuring that such information is accumulated and communicated to our management, including the Chief Executive Officer and Principal Financial
Officer, as appropriate to allow timely decisions regarding required disclosure. Internal controls for financial reporting are procedures which are designed with the objective of providing reasonable assurance that our transactions are properly
authorized, our assets are safeguarded against unauthorized or improper use and our transactions are properly recorded and reported, all to permit the preparation of our financial statements in conformity with U.S. GAAP.

Limitations on the Effectiveness of Controls

Our management,
including the Chief Executive Officer and the Principal Financial Officer, does not expect that our disclosure controls or our internal controls for financial reporting will prevent all error and all fraud. A control system, no matter how well
conceived and operated, can provide only reasonable, not absolute, assurance that the objectives of the control system are met. Further, the design of a control system must reflect the fact that there are resource constraints, and the benefits of
controls must be considered relative to their costs. Because of the inherent limitations in all control systems, no evaluation of controls can provide absolute assurance that all control issues and instances of fraud, if any, have been detected.
These inherent limitations include the realities that judgments in decision-making can be faulty, and that breakdowns can occur because of simple error or mistake. Additionally, controls can be circumvented by the individual acts of some persons, by
collusion of two or more people, or by



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management override of the controls. The design of any system of controls also is based in part upon certain assumptions about the likelihood of future
events, and there can be no assurance that any design will succeed in achieving its stated goals under all potential future conditions; over time, controls may become inadequate because of changes in conditions, or the degree of compliance with the
policies or procedures may deteriorate. Because of the inherent limitations in a cost-effective control system, misstatements due to error or fraud may occur and not be detected.

Scope of the Controls Evaluation

The evaluation of our disclosure controls and our internal controls for
financial reporting by our Chief Executive Officer and our Principal Financial Officer included a review of the objective and design of the controls, our implementation of the controls and the effect of the controls on the information generated for
use in this Quarterly Report on Form 10-Q. In accordance with SEC requirements, the Chief Executive Officer and the Principal Financial Officer note that, during our most recent fiscal quarter, there have been no changes in our internal controls for
financial reporting that have materially affected or are reasonably likely to materially affect our internal controls for financial reporting.

Conclusions

Based upon the controls evaluation, our Chief Executive Officer and our Principal Financial Officer have concluded that
our disclosure controls are effective to ensure that information required to be disclosed is recorded, processed, summarized and reported within the time periods specified in the SECs rules and forms and that material information relating to
the Company is made known to management, including the Chief Executive Officer and the Principal Financial Officer, particularly during the period when our periodic reports are being prepared, and that our internal controls for financial reporting
are effective to provide reasonable assurance that our financial statements are fairly presented in conformity with U.S. GAAP.

PART II: OTHER INFORMATION



|ITEM 1: | LEGAL PROCEEDINGS
|------- | -----------------

There have been no material developments in
litigation matters during the quarter ended June 27, 2009 from those disclosed in our Annual Report on Form 10-K for the year ended December 31, 2008.

We are a defendant or plaintiff in various actions that have arisen in the normal course of business. We believe that the ultimate disposition of these matters will not have a material adverse effect on our business, financial condition or
results of operations. However, due to the uncertainty surrounding the litigation process, we are unable to estimate a range of loss, if any, at this time.



|ITEM 1A: | RISK FACTORS
|-------- | ------------

Set forth below and elsewhere in this Quarterly
Report on Form 10-Q, and in other documents we file with the SEC, are risks and uncertainties that could cause actual results to differ materially from the results expressed or implied by the forward-looking statements contained in this Quarterly
Report. The risk factors set forth below entitled Recent deterioration in the global economy and credit markets has affected and may continue to adversely affect our results of operations or our liquidity, Changes in tax rules, tax
assets or liabilities have negatively impacted our results and may continue to negatively impact our financial results, Our liquidity can be affected by unanticipated events in the credit markets and We have incurred and may
in the future incur impairments to goodwill or long-lived assets have been revised from the prior statement on our Annual Report on Form 10-K filed with the SEC for the year ended December 31, 2008.

Recent deterioration in the global economy and credit markets has affected and may continue to adversely affect our results of operations or our
liquidity.

Our operations have been adversely affected by the recent deterioration in the global economy causing our customers to delay or
discontinue spending on our products. Continuation of the economic downturn may further negatively impact our operations by affecting the solvency of our customers, the solvency of our key suppliers, or the ability of our customers to obtain credit
to finance purchases of our products. If the global economy and credit markets continue to deteriorate or do not improve and our future sales continue to decline, our financial condition and results of operations could be adversely impacted. Our
liquidity may also be adversely impacted if we are unable to obtain credit facilities with terms that are favorable, if needed.



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Changes in tax rates, tax assets or liabilities have negatively impacted our results and may
continue to negatively impact our future results.

We are subject to taxation in the United States and other countries. Our effective tax rate has
fluctuated in the past and may continue to fluctuate in the future. Future effective tax rates could also be affected by changes in the composition of earnings in countries with differing tax rates, changes in the valuation of deferred tax assets
and liabilities, or changes in the tax laws. For example, on February 20, 2009, the California Budget Act of 2008 was signed into law which revised certain provisions of the California State Tax Code, including the option to elect an
alternative method to attribute taxable income to California for tax years beginning on or after January 1, 2011. We now expect that in years 2011 and beyond, our income subject to tax in California will be lower than under prior tax law and
that our California deferred tax assets are therefore less likely to be realized. As a result, we recorded a $19.4 million charge to reduce our previously recognized California deferred tax assets in the first quarter of 2009.

We are also subject to regular examination of our tax returns by the Internal Revenue Service (IRS) and other tax authorities, including state revenue agencies and
foreign governments. The IRS and other tax authorities have increasingly focused attention on intercompany transfer pricing with respect to sales of products and services and the use of intangible assets. We could face significant future challenges
on these transfer pricing issues in one or more jurisdictions. We regularly assess the likelihood of favorable or unfavorable outcomes resulting from examinations by the IRS and other tax authorities to determine the adequacy of our provision for
income taxes. Although we believe that our tax estimates are reasonable, there can be no assurance that any final determination will not be materially different from the treatment reflected in our historical income tax provisions and accruals.
Factors that could cause estimates to be materially different include, but are not limited to:



| |  | Changes in the regulatory environment;
| | - | --------------------------------------



| |  | Changes in accounting and tax standards or practices;
| | - | -----------------------------------------------------



| |  | Overall business conditions in the equipment industry;
| | - | ------------------------------------------------------



| |  | Changes in the composition of operating income by tax jurisdiction; and
| | - | -----------------------------------------------------------------------



| |  | The Companys operating results before taxes.
| | - | ---------------------------------------------

Downturns in the semiconductor industry negatively impact demand for our equipment.

Our business depends predominantly on the
capital expenditures of semiconductor manufacturers, which in turn depend on current and anticipated market demand for integrated circuits and the products that use them. The semiconductor industry has historically been cyclical and has experienced
periodic downturns that reduced the demand for semiconductor processing equipment, including equipment that we manufacture and market. These periods have historically been followed by periods of rapid growth. During periods of reduced and declining
demand, we must be able to quickly and effectively align our costs with prevailing market conditions, and at the same time motivate and retain key employees and maintain a stable management team. Also, our inventory levels have at times been higher
than optimal and our gross margins have at times been lower than optimal due to lower production volumes during these periods. We cannot provide any assurance that we will not be required to make inventory valuation adjustments in future periods.
During periods of rapid growth, we must be able to acquire or develop sufficient manufacturing capacity, and hire and assimilate a sufficient number of qualified people to meet customer demand. Net orders, net sales and operating results may be
adversely affected and result in additional workforce reductions or higher costs if we fail to respond to changing industry conditions in a timely and effective manner. We experienced an increase in bookings in the second quarter of 2009 after
experiencing declines in bookings during each successive quarter in 2008 through the first quarter of 2009. We could experience decreases in bookings in the future, and as a result, our net sales and operating results may be adversely affected. In
the period from 2001 through 2006, we implemented various restructuring plans to align our business with fluctuating conditions. In 2008 and the first half of 2009, we implemented additional cost reduction actions to align our business with current
economic conditions. Future restructurings or other cost reduction actions may be required.

Our financial results have fallen short
and may continue to fall short of anticipated levels; forecasting net sales and profitability is complex and our forecasts may be inaccurate.

Our
financial results in the first and fourth quarters of 2008 fell short of previously announced guidance for those quarters. The first quarter shortfall was the result of higher than anticipated manufacturing costs, higher write-downs of evaluation
systems and a higher than anticipated effective tax rate. The fourth quarter shortfall was the result of customer delays in scheduled shipments and cancellations of systems orders due to the rapid decline in the economy during the quarter.
Management typically provides quarterly financial forecasts. These forecasts, when made, are based on assumptions believed to be reasonable at the time. However, actual results may vary from forecasted results for a variety of reasons as evidenced
by the first and fourth quarters of 2008. Our lengthy



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sales cycle, coupled with customers competing capital budget considerations, makes the timing of customer orders and product acceptances difficult to
predict. In addition, our backlog at the beginning of a quarter typically does not include all orders required to achieve our sales objectives for that quarter and is not a reliable indicator of our future sales. As a result, our revenues and
operating results for a quarter depend on our shipping orders as scheduled during that quarter, receiving customer acceptance during the quarter of previously shipped products, and obtaining new orders for products to be shipped in that same
quarter. Any delay in, or cancellation of, scheduled shipments and customer acceptances or in shipments from new orders could materially and adversely affect our financial results. These factors have caused and may continue to cause our financial
results to differ materially from prior periods and from financial forecasts we have previously provided.

Although we believe that these forecasts provide
investors and analysts with a better understanding of managements expectations for the future and are useful to our stockholders and potential stockholders, such forecasts are comprised of forward-looking statements subject to the risks and
uncertainties described in this report and in our other public filings and public statements. If our operating or financial results for a particular period differ from our forecasts or the expectations of investment analysts, or if we change our
forecasts for future periods, the market price of our common stock could decline.

Our liquidity can be affected by unanticipated
events in the credit markets.

We own tax-exempt auction-rate securities whose underlying assets are either student loans substantially backed by
the federal government or closed-end municipal funds. Due to auction failures in the marketplace, we will not have access to these funds unless (a) future auctions are successful, (b) the securities are called by the issuer, (c) we
sell the securities in a secondary market, or (d) the underlying notes mature. Currently, there are no active secondary markets. If current market conditions do not improve, additional temporary and other-than-temporary impairment charges could
occur in future periods which would reduce the value of our investments and could negatively impact our results of operations. Based on our expected operating cash flows, and our other sources of cash, we do not anticipate the current illiquidity of
these investments to adversely affect our operations or financial condition.

We believe that this impairment is temporary as we do not intend to sell
these securities, we will not be required to sell these securities before recovery and we expect to recover the amortized cost basis of these securities. Additionally, these securities have either been guaranteed by the federal government or, in the
case of closed-end funds, they are backed by more than 200% collateral. Substantially all of our auction-rate securities are currently rated AAA, the highest rating by a rating agency. We evaluate our investments periodically for possible
other-than-temporary impairment by reviewing factors such as the length of time and extent to which fair value has been below cost basis, the financial condition of the issuer and insurance guarantor, and our ability to hold the investment for a
period of time which may be sufficient for anticipated recovery of market value. We believe we will ultimately be able to liquidate these investments without significant loss through successful auctions, redemptions of securities by the issuers, or
upon maturity. However, it might be necessary to hold these securities until the final maturity of the underlying notes to realize their full value.

Our quarterly operating results and stock price are unpredictable.

We have experienced and expect to
continue to experience significant fluctuations in our quarterly operating results, which may adversely affect our stock price. Our future quarterly operating results and stock price may not align with past trends. The factors that have had and
could continue to lead to fluctuations in our results include, but are not limited to:



| |  | Changing demand for and sales of lower-margin products relative to higher-margin products;
| | - | ------------------------------------------------------------------------------------------



| |  | Economic conditions in the electronics and semiconductor industry generally and the equipment industry specifically;
| | - | --------------------------------------------------------------------------------------------------------------------



| |  | Unpredictability of demand for and variability of mix of our products in our forecast, which can cause unexpected positive or negative inventory adjustments in a particular period;
| | - | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------



| |  | Emergence of new industry standards;
| | - | ------------------------------------



| |  | Competitive pricing pressures;
| | - | ------------------------------



| |  | Failure to receive anticipated orders in time to permit shipment during the quarter;
| | - | ------------------------------------------------------------------------------------



| |  | Timing and cancellation of customer orders and shipments, including deferring orders of our existing products due to new product announcements by us and/or our competitors;
| | - | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------



| |  | Building our systems according to forecast, instead of limited backlog information, which hinders our ability to plan production and inventory levels;
| | - | ------------------------------------------------------------------------------------------------------------------------------------------------------



| |  | The effect of revenue recognized upon acceptance with little or no associated costs;
| | - | ------------------------------------------------------------------------------------



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| |  | Bankruptcy of certain key customers;
| | - | ------------------------------------



| |  | Foreign currency exchange rate fluctuations, including those related to our Euro-denominated debt obligations;
| | - | --------------------------------------------------------------------------------------------------------------



| |  | Fluctuation in warranty costs;
| | - | ------------------------------



| |  | Variability in manufacturing yields;
| | - | ------------------------------------



| |  | The financial condition of our customers has impacted and may continue to impact their ability to purchase our products; and
| | - | ----------------------------------------------------------------------------------------------------------------------------



| |  | Ability to fund capital requirements.
| | - | -------------------------------------

We have
incurred and may in the future incur impairments to goodwill or long-lived assets.

We review our long-lived assets, including goodwill and other
intangible assets, for impairment annually in the fourth quarter or whenever events or changes in circumstances indicate that the carrying amount of these assets may not be recoverable. We recorded an impairment charge in the fourth quarter of 2008
to reduce the carrying value of goodwill within our IAG. Our fourth quarter impairment assessment indicated that the Semiconductor Groups anticipated cash flows would marginally cover the carrying value of the reporting unit, resulting in no
impairment charges for this segment. Indicators of goodwill impairment were present at the end of the first quarter of 2009. However, after completing an interim impairment test, we determined that the estimated fair value of each reporting unit
exceeded its carrying value and no additional impairments were required.

Continued negative industry or economic trends, including the lack of recovery in
the market price of our common stock, reduced estimates of future cash flows, disruptions to our business, slower growth rates or lack of growth in the Semiconductor Group or IAG could lead to additional impairment charges of our long-lived assets,
including goodwill and other intangible assets. If, in any period, our stock price decreases to the point where the fair value of the Company, as determined by our market capitalization, is less than our book value, this too could indicate a
potential impairment and we may be required to record an impairment charge in that period.

Our valuation methodology for assessing impairment requires
management to make judgments and assumptions based on historical experience and to rely heavily on projections of future operating performance. We operate in highly competitive environments and projections of future operating results and cash flows
may vary significantly from results. Additionally, if our analysis results in further impairment to our goodwill for the Semiconductor Group or Industrial Applications Group, we may be required to record additional charges to earnings in our
financial statements during a period in which such impairment is determined to exist, which may negatively impact our results of operations.

We face risks related to concentration of net sales.

We sell to a limited number of customers, and we expect that sales to
relatively few customers will continue to account for a high percentage of our net sales in the foreseeable future. Although the composition of the group comprising our largest customers varies from year to year, the loss of a significant customer
or any reduction in orders from a significant customer, including reductions due to customer departures from recent buying patterns, as well as economic or competitive conditions in the semiconductor industry, could materially and adversely affect
our business, financial condition or results of operations. Because products are configured to customer specifications, changing, rescheduling or canceling may result in significant non-recoverable costs.

Rapid technological change in the semiconductor industry requires substantial research and development expenditures and responsiveness to customer
needs.

We devote a significant portion of our personnel and financial resources to R&D programs, and we seek to maintain close relationships
with our customers in order to remain responsive to their product and manufacturing process needs. Our success depends in part on our ability to accurately predict evolving industry standards, to develop innovative solutions and improve existing
technologies, to win market acceptance of our new and advanced technologies and to manufacture our products in a timely and cost-effective manner. Our products and processes must address changing customer needs in a range of materials, including
copper and aluminum, at ever-smaller line widths and feature sizes, while maintaining our focus on manufacturing efficiency and product reliability. If we do not continue to gain market acceptance for our new technologies and products, or develop
and introduce improvements in a timely manner in response to changing market conditions or customer requirements, or remain focused on R&D efforts that will translate into greater revenues, our business could be seriously harmed.



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In the capital equipment market, technological innovations tend to have long development cycles. We have experienced
delays and technical and manufacturing difficulties from time to time in the introduction of certain of our products and product enhancements. In addition, we may experience delays and technical and manufacturing difficulties in future introductions
or volume production of our new systems or enhancements. The increased costs and reduced efficiencies that may be associated with the development, manufacture, sale and support of future products or product enhancements relative to our existing
products may adversely affect our operating results.

Our success in developing, introducing and selling new and enhanced systems depends upon a variety of
factors, including product selection; hiring, retaining and motivating highly qualified design and engineering personnel; timely and efficient completion of product design and development; implementation of manufacturing and assembly processes;
achieving specified product performance in the field; and effective sales and marketing. There can be no assurance that we will be successful in selecting, developing, manufacturing and marketing new products, or in enhancing our existing products.
There can be no assurance that revenue from future products or product enhancements will be sufficient to recover our investments in R&D. To ensure the functionality and reliability of our future product introductions or product improvements, we
incur substantial R&D costs early in development cycles, before we can confirm the technical feasibility or commercial viability of a product or product improvement. If new products have reliability or quality problems, reduced orders, or higher
manufacturing costs, delays in collecting accounts receivable and additional service may result and warranty expenses may rise, affecting our gross margins. Any of these events could materially and adversely affect our business, financial condition
or results of operations.

The competitive and capital-intensive nature of the semiconductor industry increases the difficulty of
maintaining gross margin and maintaining and capturing market share.

We face substantial competition in the industry, from both potential new
market entrants and established competitors. Competitors may have greater financial, marketing, technical or other resources, and greater ability to respond to pricing pressures than we do. They may also have broader product lines, ability to reduce
price through product bundling, greater experience with high-volume manufacturing, greater customer service capabilities, or larger and more established sales organizations and customer bases. To maintain or capture a position in the market, we must
develop new and enhanced systems and introduce them at competitive prices on a timely basis, while managing our R&D, product, and warranty costs. Semiconductor manufacturers incur substantial costs to install and integrate capital equipment into
their production lines. This increases the likelihood of continuing relationships with chosen equipment vendors, including our competitors, and the difficulty of penetrating new customer accounts. In addition, sales of our systems depend in
significant part upon a prospective customers decision to increase or expand manufacturing capacity  which typically involves a significant capital commitment. From time to time, we have experienced delays in finalizing system sales
following initial system qualification. Due to these and other factors, our systems typically have a lengthy sales cycle, during which we may expend substantial funds and management effort. Heightened competition may also force price reductions that
could adversely affect our results of operations.

We are exposed to risks associated with outsourcing activities, which could result
in supply shortages that could affect our ability to meet customer demands.

We outsource the manufacture of most subassemblies, which enables us
to focus on performing system design, assembly and testing in-house, thereby minimizing our fixed costs and capital expenditures. Although we make reasonable efforts to ensure that third party providers will perform to our standards, our reliance on
suppliers and subcontractors limits our control over quality assurance and delivery schedules. Defects in workmanship, unacceptable yields, manufacturing disruptions and difficulties in obtaining export and import approvals may impair our ability to
manage inventory and cause delays in shipments and cancellation of orders that may adversely affect our relationships with current and prospective customers and enable competitors to penetrate our customer accounts. In addition, third party
providers may prioritize capacity for larger competitors or increase prices to us, which may adversely affect our profitability and our ability to respond to pricing pressures from competitors and customers.

Our growth and ability to meet customer demands depend in part on our ability to obtain from our suppliers timely deliveries of parts, components and subassemblies for
the manufacture and support of our products. Although we make reasonable efforts to ensure that such parts are available from multiple suppliers, certain key parts may be obtained only from a single source or from limited sources. These suppliers
are in some cases thinly capitalized, independent companies who derive a significant amount of their business from us or from a small group of companies in the semiconductor industry. As a result, our supply channels may be vulnerable to disruption.
Any such disruption to or termination of our supplier relationships may result in a prolonged inability to secure adequate supplies at reasonable prices or of acceptable quality, and may adversely affect our ability to bring new products to market
and deliver them to customers in a timely manner. As a result, our revenues and operations may be adversely affected.



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The loss of key employees could harm our business and operations.

Our employees are extremely important to our success, and our key management, engineering and other employees may be difficult to replace. If we are unable to retain key
personnel, or to attract, assimilate and retain additional highly qualified employees to meet our needs in the future, our business and operations could be harmed.

We are exposed to the risks of global operations.

We serve an increasingly global market. Substantial
operations outside of the United States and export sales expose us to certain risks that may adversely affect our operating results and net sales, including, but not limited to:



| |  | Global or regional economic downturns;
| | - | --------------------------------------



| |  | Adverse conditions in credit markets;
| | - | -------------------------------------



| |  | Potential adverse tax consequences, including withholding tax rules that may limit the repatriation of our earnings, and higher effective income tax rates in foreign countries where
we conduct business;
| | - | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------



| |  | Tariffs and other trade barriers;
| | - | ---------------------------------



| |  | Challenges in staffing and managing foreign operations and providing prompt and effective field support to our customers outside of the United States;
| | - | ------------------------------------------------------------------------------------------------------------------------------------------------------



| |  | Difficulties in managing foreign distributors;
| | - | ----------------------------------------------



| |  | Governmental controls, either by the United States or other countries, that restrict our business overseas or the import or export of semiconductor products, or increase the cost of
our operations;
| | - | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------



| |  | Longer payment cycles and difficulties in collecting accounts receivable outside of the United States;
| | - | ------------------------------------------------------------------------------------------------------



| |  | Inadequate protection or enforcement of our intellectual property and other legal rights in foreign jurisdictions; and
| | - | ----------------------------------------------------------------------------------------------------------------------



| |  | Political instability, natural disasters, acts of war or terrorism.
| | - | -------------------------------------------------------------------

We
enter into foreign currency forward exchange contracts to hedge against the short-term impact of currency fluctuations, including forecasted sales transactions denominated in Japanese yen. There is no assurance that our hedging program will be
effective. Exchange rate volatility may also increase the cost of our exported products for international customers and inhibit demand.

There can be no
assurance that any of these factors will not have a material adverse effect on our business, financial condition or results of operations. In addition, each region in the global equipment market exhibits unique market characteristics that can cause
capital equipment investment patterns to vary significantly from period to period. We derive a substantial portion of our revenues from customers in Asia. Any negative economic developments, legal or regulatory changes, terrorism in Asia or
geo-political instability in Asia, including the possible outbreak of hostilities or epidemics involving Singapore, China, Taiwan, Korea or Japan, could result in the cancellation or delay by certain significant customers of orders for our products,
which could adversely affect our business, financial condition or results of operations. Our continuing expansion in Asia renders us increasingly vulnerable to these risks.

We also maintain a program of insurance coverage for various types of property, casualty, and other risks. We place our insurance coverage with various carriers in numerous jurisdictions. The types and amounts of
insurance that we obtain vary from time to time and from location to location, depending on availability, cost, and our decisions with respect to risk retention. The policies are subject to deductibles and exclusions that result in our retention of
a level of risk on a self-insurance basis. Losses not covered by insurance may be substantial and may increase our expenses, which could negatively impact our results of operations.

We face risks related to intellectual property.

We intend to continue to seek legal protection, primarily through patents and trade secrets, for our proprietary technology. Seeking patent protection is a lengthy and costly process, and there can be no assurance that patents will be
issued from any pending applications, or that any claims allowed from existing or pending patents will be sufficiently broad to protect our proprietary technology. There is also no guarantee that any patents we hold will not be challenged,
invalidated or circumvented, or that the patent rights granted will provide competitive advantages to us. Our competitors have developed and may continue to develop and obtain patents for technologies that are similar or superior to our
technologies. In addition, the laws of foreign jurisdictions in which we develop, manufacture or sell our products may not protect our intellectual property rights to the same extent as do the laws of the United States.



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Adverse outcomes in current or future legal disputes regarding patent and intellectual property rights could result in
the loss of our intellectual property rights, subject us to significant liabilities to third parties, require us to seek licenses from third parties on terms that may not be reasonable or favorable to us, prevent us from manufacturing or selling our
products, or compel us to redesign our products to avoid incorporating third parties intellectual property. As a result, our product offerings may be delayed, and we may be unable to meet customers requirements in a timely manner.
Regardless of the merit of any legal disputes, we incur and may be required to incur in the future substantial costs to prosecute or defend our intellectual property rights. Even in the absence of infringement by our products of third parties
intellectual property rights, we have elected in the past and may in the future elect to seek licenses or enter into settlements to avoid the costs of protracted litigation and the diversion of resources and management attention. However, if the
terms of settlements entered into with certain of our competitors are not observed or enforced, we may suffer further costs. Any of these circumstances could have a material adverse effect on our business, financial condition or results of
operations.

Our ability to develop intellectual property depends on hiring, retaining and motivating highly qualified design and engineering staff with
the knowledge and technical competence to advance our technology and productivity goals. To protect our trade secrets and proprietary information generally, we have entered into confidentiality or invention assignment agreements with our employees,
as well as with consultants and other parties. If these agreements are breached, our remedies may not be sufficient to cover our losses.

We are subject to litigation proceedings that could adversely affect our business.

Intellectual Property Litigation

We have received certain claims of infringement of intellectual property rights and may receive other such claims in the future. In the future, such
claims may evolve into legal proceedings or litigation against us. It is inherently difficult to assess the outcome of litigation, and there can be no assurance that we will prevail in any specific proceedings. Any such litigation could result in
substantial cost to us, including diversion of the efforts of our technical and management personnel, and this could have a material adverse effect on our business, financial condition and operating results. If we are unable to successfully defend
against such claims, we could be required to expend significant resources to develop or license alternative non-infringing technology or to obtain a license to the subject technology. There is no assurance that we will be successful with such
development, or that a license will be available on terms acceptable to us, if at all. Without such a license, we could be enjoined from future sales of the infringing product or products, which could materially and adversely affect our business,
financial condition and operating results.

Other Litigation

In addition to the litigation risks mentioned above, we are currently involved or may become subject to legal claims or proceedings related to securities, employment, customer or third party contracts, environmental regulations, product
liability or other matters. If we are required to defend against a legal claim or deem it necessary or advisable to initiate a legal proceeding to protect our rights, the expense and distraction of such a claim or proceeding, whether or not resolved
in our favor, could materially and adversely affect our business, financial condition and operating results. Further, if a claim or proceeding were resolved against us or if we were to settle any such dispute, we could be required to pay damages or
refrain from certain activities, which could have a material adverse impact on our business, financial condition and operating results.

We are exposed to risks associated with our diversification strategy.

Our core business and expertise have historically been in the
development, manufacture, sale and support of deposition technologies, wafer surface preparation and chemical mechanical planarization technologies. We lack experience in the high-precision machine manufacturing equipment market serviced by our IAG,
compared with our knowledge of the semiconductor equipment industry, and cannot give any assurance that we can maintain or improve the quality of products, level of sales and gross margins, or relations with key employees and significant customers
or suppliers that are necessary to compete in this market.

We are exposed to risks related to our indemnification of third parties.

From time to time, in the normal course of business, we indemnify third parties with whom we enter into contractual relationships, including
customers and lessors, with respect to certain matters. We have agreed, under certain conditions, to hold these third parties harmless against specified losses, such as those arising from a breach of representations or covenants, other third party
claims that our products when used for their intended purposes infringe the intellectual property rights of such other third parties, or other claims made against certain parties. We have been, and in the future may be, compelled to enter into or
accrue for probable settlements of alleged indemnification obligations or subject to potential liability arising from our customers involvements in legal disputes. It is difficult to determine the maximum potential amount of liability under
any indemnification obligations, whether or not asserted, due



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to our limited history of prior indemnification claims and the unique facts and circumstances that are likely to be involved in each particular claim. Our
business, financial condition and results of operations in a reported fiscal period could be materially adversely affected if we expend significant amounts in defending or settling any purported claims, regardless of their merit or outcomes.

We face risks associated with acquisitions, divestitures, and other transactions.

We have made, and may in the future make, acquisitions of or significant investments in businesses with complementary products, services and/or technologies.
Acquisitions involve numerous risks, including, but not limited to:



| |  | Difficulties in integrating the operations, technologies, products and personnel of acquired companies;
| | - | -------------------------------------------------------------------------------------------------------



| |  | Lack of synergies or the inability to realize expected synergies and cost-savings;
| | - | ----------------------------------------------------------------------------------



| |  | Revenue and expense levels of acquired entities differing from those anticipated at the time of the acquisitions;
| | - | -----------------------------------------------------------------------------------------------------------------



| |  | Difficulties in managing geographically dispersed operations;
| | - | -------------------------------------------------------------



| |  | The potential loss of key employees, customers and strategic partners of acquired companies;
| | - | --------------------------------------------------------------------------------------------



| |  | Claims by terminated employees, shareholders of acquired companies or other third parties related to the transaction;
| | - | ---------------------------------------------------------------------------------------------------------------------



| |  | The issuance of dilutive securities, assumption or incurrence of additional debt obligations or expenses, or use of substantial portions of our cash;
| | - | -----------------------------------------------------------------------------------------------------------------------------------------------------



| |  | Diversion of managements attention from normal daily operations of the business; and
| | - | -------------------------------------------------------------------------------------



| |  | The impairment of acquired intangible assets as a result of technological advancements, or worse-than-expected performance of acquired companies.
| | - | -------------------------------------------------------------------------------------------------------------------------------------------------

When we make a decision to sell assets or a business, we may encounter difficulty completing the transaction as a result of a range of possible factors such as new or
changed demands from the buyer. These circumstances may cause us to incur additional time or expense or to accept less favorable terms, which may adversely affect the overall benefits of the transaction.

Acquisitions, divestitures, and other transactions are inherently risky, and we cannot provide any assurance that our previous or future transactions will be successful.
The inability to effectively manage the risks associated with these transactions could materially and adversely affect our business, financial condition or results of operations.

From time to time we may enhance, modify or upgrade our enterprise resource planning and other key software applications, which could cause
unexpected problems to occur and could cause disruption to the management of our business.

From time to time, we may enhance, modify or upgrade
our enterprise resource planning (ERP) system used for our worldwide operations, as well as other key software applications used in our operations. Our ERP system is integral to our ability to accurately and efficiently maintain our books and
records, record our transactions, provide critical information to our management and prepare our financial statements.

Enhancements may eventually become
more costly, difficult and time-consuming to purchase and implement than we currently anticipate. We may encounter unexpected difficulties or costs or other challenges, any of which may disrupt our business or cause delays in the reporting of our
financial results. Our existing systems, procedures or controls may not be adequate to support our operations and require us to change our internal business practices. Corrections and improvements may be required as we enhance, modify or upgrade our
systems, procedures and controls, and could cause us to incur additional costs and require additional management attention, placing burdens on our internal resources. If we fail to manage these changes effectively, it could adversely affect our
ability to manage our business and our operating results.

Compliance with current and future environmental regulations may be
costly.

We may be subject to environmental and other regulations in certain states and countries where we produce or sell our products. We also
face increasing complexity in our product design and procurement operations as we adjust to new and prospective requirements relating to the materials composition of our products, including the restrictions on lead and certain other substances in
electronics that apply to specified electronics products put on the market in the European Union (EU). The EU also makes producers of electrical goods financially responsible for specified collection, recycling, treatment and disposal of past and
future covered products. Other countries, such as the United States, China and Japan, have enacted or may enact similar laws or regulations similar to the EU. These and other future environmental regulations could require us to reengineer certain of
our existing products.



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##### Table of Contents

|ITEM 2: | UNREGISTERED SALES OF EQUITY SECURITIES AND USE OF PROCEEDS
|------- | -----------------------------------------------------------

Repurchase of Company Securities

On February 24, 2004 we announced that our Board of Directors approved a stock repurchase plan
that authorized the repurchase of up to $500.0 million of our outstanding common stock through February 13, 2007. On September 20, 2004 we announced that our Board of Directors authorized an additional $1.0 billion for repurchase
of our outstanding common stock through September 14, 2009. On October 26, 2007 we announced that our Board of Directors authorized an additional $1.0 billion for repurchase of our outstanding common stock through October 26,
2011. During the three months ended June 27, 2009, we did not repurchase any of our outstanding common stock under this plan and we had $826.7 million available for stock repurchases under these authorizations as of June 27, 2009.

For the majority of restricted stock awards granted, the number of shares issued on the date the restricted stock awards vest is net of the minimum
statutory withholding requirements that we pay in cash to the appropriate taxing authorities on behalf of our employees. We withheld 98,736 shares through net share settlements for the three months ended June 27, 2009. These withheld shares are
not included within common stock repurchases under our authorized plan.



|ITEM 4: | SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS
|------- | ---------------------------------------------------

At
Novellus Annual Meeting of Shareholders, held on May 12, 2009, the following proposals were voted on by the Shareholders as noted below:

1.
Election of Directors.



|                    |  |            |  |               
|------------------- |  | ---------- |  | --------------
|Name of Nominee     |  | Votes For  |  | Votes Withheld
|Richard S. Hill     |  | 85,794,641 |  | 2,246,086     
|Neil R. Bonke       |  | 85,486,981 |  | 2,553,746     
|Youssef A. El-Mansy |  | 82,086,894 |  | 5,953,833     
|J. David Litster    |  | 81,387,060 |  | 6,653,667     
|Yoshio Nishi        |  | 82,079,918 |  | 5,960,809     
|Glen G. Possley     |  | 84,764,036 |  | 3,276,691     
|Ann D. Rhoads       |  | 85,508,173 |  | 2,532,554     
|William R. Spivey   |  | 80,314,104 |  | 7,726,623     
|Delbert A. Whitaker |  | 85,489,482 |  | 2,551,245     

2. Ratification and approval of the Novellus 2001 Stock Incentive Plan, as amended.



|           |  |               |  |         |  |                 
|---------- |  | ------------- |  | ------- |  | ----------------
|Votes For  |  | Votes Against |  | Abstain |  | Broker Non-Votes
|46,943,478 |  | 28,632,121    |  | 171,882 |  | 12,293,246      

3. Ratification and approval of the Amended and Restated 1992 Employee Stock Purchase Plan, as amended.



|           |  |               |  |         |  |                 
|---------- |  | ------------- |  | ------- |  | ----------------
|Votes For  |  | Votes Against |  | Abstain |  | Broker Non-Votes
|60,444,352 |  | 15,197,183    |  | 105,946 |  | 12,293,246      

4. Ratification and approval of the Senior Executive Bonus Plan.



|           |  |               |  |         |  | 
|---------- |  | ------------- |  | ------- |  | 
|Votes For  |  | Votes Against |  | Abstain |  | 
|83,503,675 |  | 3,451,324     |  | 382,948 |  | 

5. Ratification of the appointment of Ernst & Young LLP as the independent registered public accounting
firm for Novellus for the fiscal year ending December 31, 2009.



|           |  |               |  |         |  | 
|---------- |  | ------------- |  | ------- |  | 
|Votes For  |  | Votes Against |  | Abstain |  | 
|83,417,902 |  | 3,745,471     |  | 174,573 |  | 



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##### Table of Contents

|ITEM 6: | EXHIBITS
|------- | --------

(a) Exhibits



|       |  |                                                                                                                                                                                                                                                                                                                  
|------ |  | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|*10.4  |  | Amended and Restated 1992 Employee Stock Purchase Plan, as amended.                                                                                                                                                                                                                                              
|       | 
|*10.9  |  | Novellus 2001 Stock Incentive Plan, as amended, together with forms of the agreement thereunder.                                                                                                                                                                                                                 
|       | 
|*10.27 |  | Novellus 162(m) Executive Bonus Program.                                                                                                                                                                                                                                                                         
|       | 
|10.28  |  | Credit Agreement by and between Novellus Systems, Inc. and Bank of America, N.A. dated June 17, 2009.                                                                                                                                                                                                            
|       | 
|31.1   |  | Certification of Richard S. Hill, Chairman of the Board of Directors and Chief Executive Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with Rules 13a-14(a) and 15d-14(a) of
the Securities Exchange Act, as amended, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
|       | 
|31.2   |  | Certification of Jeffrey C. Benzing, Executive Vice President and Chief Administrative Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with Rules 13a-14(a) and 15d-14(a) of
the Securities Exchange Act, as amended, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.  
|       | 
|32.1   |  | Certification of Richard S. Hill, Chairman of the Board of Directors and Chief Executive Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with 18 U.S.C. 1350, as adopted
pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.                                                          
|       | 
|32.2   |  | Certification of Jeffrey C. Benzing, Executive Vice President and Chief Administrative Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with 18 U.S.C. 1350, as adopted
pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.                                                            



|* | Management contracts or compensatory plans or arrangements.
|- | -----------------------------------------------------------



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##### Table of Contents

SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, as amended, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.



NOVELLUS SYSTEMS, INC.By:

/s/ Jeffrey C. BenzingJeffrey C. BenzingExecutive Vice President and Chief Administrative Officer(Principal Financial Officer)July 31, 2009




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##### Table of Contents

EXHIBIT INDEX



|       |  |                                                                                                                                                                                                                                                                                                                  
|------ |  | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|*10.4  |  | Amended and Restated 1992 Employee Stock Purchase Plan, as amended.                                                                                                                                                                                                                                              
|       | 
|*10.9  |  | Novellus 2001 Stock Incentive Plan, as amended, together with forms of the agreement thereunder.                                                                                                                                                                                                                 
|       | 
|*10.27 |  | Novellus 162(m) Executive Bonus Program.                                                                                                                                                                                                                                                                         
|       | 
|10.28  |  | Credit Agreement by and between Novellus Systems, Inc. and Bank of America, N.A. dated June 17, 2009.                                                                                                                                                                                                            
|       | 
|31.1   |  | Certification of Richard S. Hill, Chairman of the Board of Directors and Chief Executive Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with Rules 13a-14(a) and 15d-14(a) of
the Securities Exchange Act, as amended, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.
|       | 
|31.2   |  | Certification of Jeffrey C. Benzing, Executive Vice President and Chief Administrative Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with Rules 13a-14(a) and 15d-14(a) of
the Securities Exchange Act, as amended, as adopted pursuant to Section 302 of the Sarbanes-Oxley Act of 2002.  
|       | 
|32.1   |  | Certification of Richard S. Hill, Chairman of the Board of Directors and Chief Executive Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with 18 U.S.C. 1350, as adopted
pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.                                                          
|       | 
|32.2   |  | Certification of Jeffrey C. Benzing, Executive Vice President and Chief Administrative Officer of Novellus Systems, Inc. dated July 31, 2009 in accordance with 18 U.S.C. 1350, as adopted
pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.                                                            



|* | Management contracts or compensatory plans or arrangements.
|- | -----------------------------------------------------------