# Patent

## Title
Methods for inhibition of membrane-fusion-associated events, including Hepatitis B virus transmission

## Abstract

The present invention relates to peptides which exhibit potent anti-viral activity. In particular, the invention relates to methods of using such peptides as inhibitory of hepatitis B virus (“HepB”) transmission to uninfected cells. The peptides used in the methods of the invention are homologs of the DP-178 and DP-107 peptides, peptides corresponding to amino acid residues 638 to 673, and to amino acid residues 558 to 595, respectively, of the HIV-1LAI transmembrane protein (TM) gp41.

## Background
This is a division, of application Ser. No. 08/470,896 filed Jun. 6, 1995 now U.S. Pat. No. 6,479,055, which is a continuation-in-part of Ser. No. 08/360,107, filed Dec. 20, 1994 now U.S. Pat. No. 6,017,536, which is a continuation-in-part of Ser. No. 08/255,208, filed Jun. 7, 1994 now U.S. Pat. No. 6,440,656, which is a continuation-in-part of Ser. No. 08/073,028, filed Jun. 7, 1993 now U.S. Pat. No. 5,464,933, each which is incorporated by reference in its entirety.


This invention was made with Government support under Grant No. AI-30411-02 awarded by the National Institutes of Health. The Government has certain rights in the invention.


1. INTRODUCTION
The present invention relates, first, to DP178 (SEQ ID NO:1), a peptide corresponding to amino acids 638 to 673 of the HIV-1LAI transmembrane protein (TM) gp41, and portions or analogs of DP178 (SEQ ID NO:1), which exhibit anti-membrane fusion capability, antiviral activity, such as the ability to inhibit HIV transmission to uninfected CD-4+ cells, or an ability to modulate intracellular processes involving coiled-coil peptide structures. Further, the invention relates to the use of DP178 (SEQ ID NO:1) and DP178 portions and/or analogs as antifusogenic or antiviral compounds or as inhibitors of intracellular events involving coiled-coil peptide structures. The present invention also relates to peptides analogous to DP107, a peptide corresponding to amino acids 558 to 595 of the HIV-1LAI transmembrane protein (TM) gp41, having amino acid sequences present in other viruses, such as enveloped viruses, and/or other organisms, and further relates to the uses of such peptides. These peptides exhibit anti-membrane fusion capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil peptide structures. The present invention additionally relates to methods for identifying compounds that disrupt the interaction between DP178 and DP107, and/or between DP107-like and DP178-like peptides. Further, the invention relates to the use of the peptides of the invention as diagnostic agents. For example, a DP178 peptide may be used as an HIV subtype-specific diagnostic. The invention is demonstrated, first, by way of an Example wherein DP178 (SEQ ID:1), and a peptide whose sequence is homologous to DP178 are each shown to be potent, non-cytotoxic inhibitors of HIV-1 transfer to uninfected CD-4+ cells. The invention is further demonstrated by Examples wherein peptides having structural and/or amino acid motif similarity to DP107 and DP178 are identified in a variety of viral and nonviral organisms, and in examples wherein a number of such identified peptides derived from several different viral systems are demonstrated to exhibit antiviral activity.
2. BACKGROUND OF THE INVENTION
2.1 Membrane Fusion Events
Membrane fusion is a ubiquitous cell biological process (for a review, see White, J. M., 1992, Science 258:917-924). Fusion events which mediate cellular housekeeping functions, such as endocytosis, constitutive secretion, and recycling of membrane components, occur continuously in all eukaryotic cells.
Additional fusion events occur in specialized cells. Intracellularly, for example, fusion events are involved in such processes as occur in regulated exocytosis of hormones, enzymes and neurotransmitters. Intercellularly, such fusion events feature prominently in, for example, sperm-egg fusion and myoblast fusion.
Fusion events are also associated with disease states. For example, fusion events are involved in the formation of giant cells during inflammatory reactions, the entry of all enveloped viruses into cells, and, in the case of human immunodeficiency virus (HIV), for example, are responsible for the virally induced cell-cell fusion which leads to cell death.
2.2. The Human Immunodeficiency Virus
The human immunodeficiency virus (HIV) has been implicated as the primary cause of the slowly degenerative immune system disease termed acquired immune deficiency syndrome (AIDS) (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo, R. et al., 1984, Science 224:500-503). There are at least two distinct types of HIV: HIV-1 (Barre-Sinoussi, F. et al., 1983, Science 220:868-870; Gallo R. et al., 1984, Science 224:500-503) and HIV-2 (Clavel, F. et al., 1986, Science 233:343-346; Guyader, M. et al., 1987, Nature 326:662-669). Further, a large amount of genetic heterogeneity exists within populations of each of these types. Infection of human CD-4+ T-lymphocytes with an HIV virus leads to depletion of the cell type and eventually to opportunistic infections, neurological dysfunctions, neoplastic growth, and ultimately death.
HIV is a member of the lentivirus family of retroviruses (Teich, N. et al., 1984, RNA Tumor Viruses, Weiss, R. et al., eds., CSH-Press, pp. 949-956). Retroviruses are small enveloped viruses that contain a diploid, single-stranded RNA genome, and replicate via a DNA intermediate produced by a virally-encoded reverse transcriptase, an RNA-dependent DNA polymerase (Varmus, H., 1988, Science 240:1427-1439). Other retroviruses include, for example, oncogenic viruses such as human T-cell leukemia viruses (HTLV-I, -II, -III), and feline leukemia virus.
The HIV viral particle consists of a viral core, composed of capsid proteins, that contains the viral RNA genome and those enzymes required for early replicative events. Myristylated Gag protein forms an outer viral shell around the viral core, which is, in turn, surrounded by a lipid membrane enveloped derived from the infected cell membrane. The HIV enveloped surface glycoproteins are synthesized as a single 160 Kd precursor protein which is cleaved by a cellular protease during viral budding into two glycoproteins, gp41 and gp120. gp41 is a transmembrane protein and gp120 is an extracellular protein which remains non-covalently associated with gp41, possibly in a trimeric or multimeric form (Hammarskjold, M. and Rekosh, D., 1989, Biochem. Biophys. Acta 989:269-280).
HIV is targeted to CD-4+ cells because the CD-4 cell surface protein acts as the cellular receptor for the HIV-1 virus (Dalgleish, A. et al., 1984, Nature 312:763-767; Klatzmann et al., 1984, Nature 312:767-768; Maddon et al., 1986, Cell 47:333-348). Viral entry into cells is dependent upon gp120 binding the cellular CD-4+ receptor molecules (McDougal, J. S. et al., 1986, Science 231:382-385; Maddon, P. J. et al., 1986, Cell 47:333-348) and thus explains HIV's tropism for CD-4+ cells, while gp41 anchors the enveloped glycoprotein complex in the viral membrane.
2.3. HIV Treatment
HIV infection is pandemic and HIV associated diseases represent a major world health problem. Although considerable effort is being put into the successful design of effective therapeutics, currently no curative anti-retroviral drugs against AIDS exist. In attempts to develop such drugs, several stages of the HIV life cycle have been considered as targets for therapeutic intervention (Mitsuya, H. et al., 1991, FASEB J. 5:2369-2381). For example, virally encoded reverse transcriptase has been one focus of drug development. A number of reverse-transcriptase-targeted drugs, including 2′,3′-dideoxynucleoside analogs such as AZT, ddI, ddC, and d4T have been developed which have been shown to been active against HIV (Mitsuya, H. et al., 1991, Science 249:1533-1544). While beneficial, these nucleoside analogs are not curative, probably due to the rapid appearance of drug resistant HIV mutants (Lander, B. et al., 1989, Science 243:1731-1734). In addition, the drugs often exhibit toxic side effects such as bone marrow suppression, vomiting, and liver function abnormalities.
Attempts are also being made to develop drugs which can inhibit viral entry into the cell, the earliest stage of HIV infection. Here, the focus has thus far been on CD4, the cell surface receptor for HIV. Recombinant soluble CD4, for example, has been shown to inhibit infection of CD-4+ T-cells by some HIV-1 strains (Smith, D. H. et al., 1987, Science 238:1704-1707). Certain primary HIV-1 isolates, however, are relatively less sensitive to inhibition by recombinant CD-4 (Daar, E. et al., 1990, Proc. Natl. Acad. Sci. USA 87:6574-6579). In addition, recombinant soluble CD-4 clinical trials have produced inconclusive results (Schooley, R. et al., 1990, Ann. Int. Med. 112:247-253; Kahn, J. O. et al., 1990, Ann. Int. Med. 112:254-261; Yarchoan, R. et al., 1989, Proc. Vth Int. Conf. on AIDS, p. 564, MCP 137).
The late stages of HIV replication, which involve crucial virus-specific secondary processing of certain viral proteins, have also been suggested as possible anti-HIV drug targets. Late stage processing is dependent on the activity of a viral protease, and drugs are being developed which inhibit this protease (Erickson, J., 1990, Science 249:527-533). The clinical outcome of these candidate drugs is still in question.
Attention is also being given to the development of vaccines for the treatment of HIV infection. The HIV-1 enveloped proteins (gp160, gp120, gp41) have been shown to be the major antigens for anti-HIV antibodies present in AIDS patients (Barin, et al., 1985, Science 228:1094-1096). Thus far, therefore, these proteins seem to be the most promising candidates to act as antigens for anti-HIV vaccine development. To this end, several groups have begun to use various portions of gp160, gp120, and/or gp41 as immunogenic targets for the host immune system. See for example, Ivanoff, L. et al., U.S. Pat. No. 5,141,867; Saith, G. et al., WO 92/22,654; Shafferman, A., WO 91/09,872; Formoso, C. et al., WO 90/07,119. Clinical results concerning these candidate vaccines, however, still remain far in the future.
Thus, although a great deal of effort is being directed to the design and testing of anti-retroviral drugs, a truly effective, non-toxic treatment is still needed.
3. SUMMARY OF THE INVENTION
The present invention relates, first, to DP178 (SEQ ID:1), a 36-amino acid synthetic peptide corresponding to amino acids 638 to 673 of the transmembrane protein (TM) gp41 from the HIV-1 isolate LAI (HIV-1LAI), which exhibits potent anti-HIV-1 activity. As evidenced by the Example presented below, in Section 6, the DP178 (SEQ ID:1) antiviral activity is so high that, on a weight basis, no other known anti-HIV agent is effective at concentrations as low as those at which DP178 (SEQ ID:1) exhibits its inhibitory effects.
The invention further relates to those portions and analogs of DP178 which also show such antiviral activity, and/or show anti-membrane fusion capability, or an ability to modulate intracellular processes involving coiled-coil peptide structures. The term “DP178 analog” refers to a peptide which contains an amino acid sequence corresponding to the DP178 peptide sequence present within the gp41 protein of HIV-1LIA, but found in viruses and/or organisms other than HIV-1LAI. Such DP178 analog peptides may, therefore, correspond to DP178-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1LAI, as well as non-enveloped viruses. Further, such analogous DP178 peptides may also correspond to DP178-like amino acid sequences present in nonviral organisms.
The invention further relates to DP107 (SEQ ID NO:89) peptide analogs. DP107 is a peptide corresponding to amino acids 558-595 of the HIV-1LAI transmembrane protein (TM) gp41. The term “DP107 analog” as used herein refers to a peptide which contains an amino acid sequence corresponding to the DP107 sequence present within the gp41 protein of HIV-1LAI, but found in viruses and organisms other than HIV-1LAI. Such DP107 analog peptides may, therefore, correspond to DP107-like amino acid sequences present in other viruses, such as, for example, enveloped viruses, such as retroviruses other than HIV-1LAI, as well as non-enveloped viruses. Further, such DP107 analog peptides may also correspond to DP107-like amino acid sequences present in nonviral organisms.
Further, the peptides of the invention include DP107 analog and DP178 analog peptides having amino acid sequences recognized or identified by the 107×178×4, ALLMOTI5 and/or PLZIP search motifs described herein.
The peptides of the invention may, for example, exhibit antifusogenic activity, antiviral activity, and/or may have the ability to modulate intracellular processes which involve coiled-coil peptide structures. With respect to the antiviral activity of the peptides of the invention, such an antiviral activity includes, but is not limited to the inhibition of HIV transmission to uninfected-CD-4+ cells. Additionally, the antifusogenic capability, antiviral activity or intracellular modulatory activity of the peptides of the invention merely requires the presence of the peptides of the invention, and, specifically, does not require the stimulation of a host immune response directed against such peptides.
The peptides of the invention may be used, for example, as inhibitors of membrane fusion-asociated events, such as, for example, the inhibition of human and non-human retroviral, especially HIV, transmission to uninfected cells. It is further contemplated that the peptides of the invention may be used as modulators of intracellular events involving coiled-coil peptide structures.
The peptides of the invention may, alternatively, be used to identify compounds which may themselves exhibit antifusogenic, antiviral, or intracellular modulatory activity. Additional uses include, for example, the use of the peptides of the invention as organism or viral type and/or subtype-specific diagnostic tools.
The terms “antifusogenic” and “anti-membrane fusion”, as used herein, refer to an agent's ability to inhibit or reduce the level of membrane fusion events between two or more moieties relative to the level of membrane fusion which occurs between said moieties in the absence of the peptide. The moieties may be, for example, cell membranes or viral structures, such as viral envelopes or pili. The term “antiviral”, as used herein, refers to the compound's ability to inhibit viral infection of cells, via, for example, cell-cell fusion or free virus infection. Such infection may involve membrane fusion, as occurs in the case of enveloped viruses, or some other fusion event involving a viral structure and a cellular structure (e.g., such as the fusion of a viral pilus and bacterial membrane during bacterial conjugation).
It is also contemplated that the peptides of the invention may exhibit the ability to modulate intracellular events involving coiled-coil peptide structures. “Modulate”, as used herein, refers to a stimulatory or inhibitory effect on the intracellular process of interest relative to the level or activity of such a process in the absence of a peptide of the invention.
Embodiments of the invention are demonstrated below wherein an extremely low concentration of DP178 (SEQ ID:1), and very low concentrations of a DP178 homolog (SEQ ID:3) are shown to be potent inhibitors of HIV-1 mediated CD-4+ cell-cell fusion (i.e., syncytial formation) and infection of CD-4+ cells by cell-free virus. Further, it is shown that DP178 (SEQ ID:1) is not toxic to cells, even at concentrations 3 logs higher than the inhibitory DP-178 (SEQ ID:1) concentration.
The present invention is based, in part, on the surprising discovery that the DP107 and DP178 domains of the HIV gp41 protein non-covalently complex with each other, and that their interaction is required for the normal infectivity of the virus. This discovery is described in the Example presented, below, in Section 8. The invention, therefore, further relates to methods for identifying antifusogenic, including antiviral, compounds that disrupt the interaction between DP107 and DP178, and/or between DP107-like and DP178-like peptides.
Additional embodiments of the invention (specifically, the Examples presents in Sections 9-16 and 19-25, below) are demonstrated, below, wherein peptides, from a variety of viral and nonviral sources, having structural and/or amino acid motif similarity to DP107 and DP178 are identified, and search motifs for their identification are described. Further, Examples (in Sections 17, 18, 25-29) are presented wherein a number of the peptides of the invention are demonstrated exhibit substantial antiviral activity or activity predictive of antiviral activity.
3.1. Definitions
Peptides are defined herein as organic compounds comprising two or more amino acids covalently joined by peptide bonds. Peptides may be referred to with respect to the number of constituent amino acids, i.e., a dipeptide contains two amino acid residues, a tripeptide contains three, etc. Peptides containing ten or fewer amino acids may be referred to as oligopeptides, while those with more than ten amino acid residues are polypeptides. Such peptides may also include any of the modifications and additional amino and carboxy groups as are described herein.
Peptide sequences defined herein are represented by one-letter symbols for amino acid residues as follows:
A (alanine)
R (arginine)
N (asparagine)
D (aspartic acid)
C (cysteine)
Q (glutamine)
E (glutamic acid)
G (glycine)
H (histidine)
I (isoleucine)
L (leucine)
K (lysine)
M (methionine)
F (phenylalanine)
P (proline)
S (serine)
T (threonine)
W (tryptophan)
Y (tyrosine)
V (valine)



4. BRIEF DESCRIPTION OF THE FIGURES
FIG. 1. Amino acid sequence of DP178 (SEQ ID:1) derived from HIVLAI; DP178 homologs derived from HIV-1SF2 (DP-185; SEQ ID:3), HIV-1RF (SEQ ID:4), and HIV-1MN (SEQ ID:5); DP178 homologs derived from amino acid sequences of two prototypic HIV-2 isolates, namely, HIV-2rod (SEQ ID:6) and HIV-2NHZ (SEQ ID:7); control peptides: DP-180 (SEQ ID:2), a peptide incorporating the amino acid residues of DP178 in a scrambled sequence; DP-118 (SEQ ID:10) unrelated to DP178, which inhibits HIV-1 cell free virus infection; DP-125 (SEQ ID:8), unrelated to DP178, also inhibits HIV-1 cell free virus infection; DP-116 (SEQ ID:9), unrelated to DP178, is negative for inhibition of HIV-1 infection when tested using a cell-free virus infection assay. Throughout the figures, the one letter amino acid code is used.
FIG. 2. Inhibition of HIV-1 cell-free virus infection by synthetic peptides. IC50 refers to the concentration of peptide that inhibits RT production from infected cells by 50% compared to the untreated control. Control: the level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.
FIG. 3. Inhibition of HIV-1 and HIV-2 cell-free virus infection by the synthetic peptide DP178 (SEQ ID:1). IC50: concentration of peptide that inhibits RT production by 50% compared to the untreated control. Control: Level of RT produced by untreated cell cultures infected with the same level of virus as treated cultures.
FIGS. 4A-4B. Fusion Inhibition Assays. FIG. 4A: DP178 (SEQ ID:1) inhibition of HIV-1 prototypic isolate-mediated syncytial formation; data represents the number of virus-induced syncytial per cell. FIG. 4B: DP-180 (SEQ ID:2) represents a scrambled control peptide; DP-185 (SEQ ID:3) represents a DP178 homolog derived from HIV-1SP2 isolate; Control, refers to the number of syncytial produced in the absence of peptide.
FIG. 5. Fusion inhibition assay: HIV-1 vs. HIV-2. Data represents the number of virus-induced syncytial per well. ND: not done.
FIG. 6. Cytotoxicity study of DP178 (SEQ ID:1) and DP-116 (SEQ ID:9) on CEM cells. Cell proliferation data is shown.
FIG. 7. Schematic representation of HIV-gp41 and maltose binding protein (MBP)-gp41 fusion proteins. DP107 and DP178 are synthetic peptides based on the two putative helices of gp41. The letter P in the DP107 boxes denotes an Ile to Pro mutation at amino acid number 578. Amino acid residues are numbered according to Meyers et al., “Human Retroviruses and AIDS”, 1991, Theoret. Biol. and Biophys. Group, Los Alamos Natl. Lab., Los Alamos, N. Mex. The proteins are more fully described, below, in Section 8.1.1.
FIG. 8. A point mutation alters the conformation and anti-HIV activity of M41.
FIG. 9. Abrogation of DP178 anti-HIV activity. Cell fusion assays were carried out in the presence of 10 nM DP178 and various concentrations of M41Δ178 or M41PΔ178.
FIG. 10. Binding of DP178 to leucine zipper of gp41 analyzed by FAb-D ELISA.
FIGS. 11A-B. Models for a structural transition in the HIV-1 TM protein. Two models are proposed which indicate a structural transition from a native oligomer to a fusogeric state following a trigger event (possibly gp120 binding to CD4). Common features of both models include (1) the native state is held together by noncovalent protein-protein interactions to form the heterodimer of gp120/41 and other interactions, principally though gp41 interactive sites, to form homo-oligomers on the virus surface of the gp120/41 complexes; (2) shielding of the hydrophobic fusogenic peptide at the N-terminus (F) in the native state; and (3) the leucine zipper domain (DP107) exists as a homo-oligomer coiled coil only in the fusogenic state. The major differences in the two models include the structural state (native or fusogenic) in which the DP107 and DP178 domains are complexed to each other. In the first model (FIG. 11A) this interaction occurs in the native state and in the second (FIG. 11B), it occurs during the fusogenic state. When triggered, the fusion complex in the model depicted in (A) is generated through formation of coiled-coil interactions in homologous DP17 domains resulting in an extended α-helix. This conformational change positions the fusion peptide for interaction with the cell membrane. In the second model (FIG. 11B), the fusogenic complex is stabilized by the association of the DP178 domain with the DP107 coiled-coil.
FIG. 12. Motif design using heptad repeat positioning of amino acids of known coiled-coils [GCN4:(SEQ ID NO:84); C-FOS:(SEQ ID NO:85); C-JUN:(SEQ ID NO:86); C-MYC:(SEQ ID NO:87); FLU LOOP 36:(SEQ ID NO:88)].
FIG. 13. Motif design using proposed heptad repeat positioning of amino acids of DP107 and DP178.
FIG. 14. Hybrid motif design crossing GCN4 and DP107.
FIG. 15. Hybrid motif design crossing GCN4 and DP178.
FIG. 16. Hybrid motif design 107×178×4, crossing DP107 (SEQ ID NO:89) and DP178 (SEQ ID NO:1). This motif was found to be the most consistent at identifying relevant DP107-like and DP178-like peptide regions.
FIG. 17. Hybrid motif design crossing GCN4, DP107, and DP178.
FIG. 18. Hybrid motif design ALLMOTI5 crossing GCN4, DP107, DP178, c-Fos c-Jun, c-Myc, and Flu Loop 36.
FIG. 19. PLZIP motifs designed to identify N-terminal proline-leucine zipper motifs.
FIG. 20. Search results for HIV-1 (BRU isolate) enveloped protein gp41(SEQ ID NO:90). Sequence search motif designations: Spades (): 107×178×4; Hearts (♥) ALLMOTI5; Clubs (): PLZIP; Diamonds (♦): transmembrane region (the putative transmembrane domains were identified using a PC/Gene program designed to search for such peptide regions). Asterisk (*): Lupas method. The amino acid sequences identified by each motif are bracketed by the respective characters. Representative sequences chosen based on 107×178×4 searches are underlined and in bold. DP107 and DP178 sequences are marked, and additionally double-underlined and italicized.
FIG. 21. Search results for human respiratory syncytial virus (RSV) strain A2 fusion glycoprotein F1 (SEQ ID NO:91). Sequence search motif designations are as in FIG. 20.
FIG. 22. Search results for simian immunodeficiency virus (SIV) enveloped protein gp41 (AGM3 isolate)(SEQ ID NO:92). Sequence search motif designations are as in FIG. 20.
FIG. 23. Search results for canine distemper virus (strain Onderstepoort) fusion glycoprotein 1 (SEQ ID NO:93). Sequence search motif designations are as in FIG. 20.
FIG. 24. Search results for newcastle disease virus (strain Australia-Victoria/32) fusion glycoprotein F1 (SEQ ID NO:94). Sequence search motif designations are as in FIG. 20.
FIG. 25. Search results for human parainfluenza 3 virus (strain NIH 47885) fusion glycoprotein F1 (SEQ ID NO:95). Sequence search motif designations are as in FIG. 20.
FIG. 26. Search results for influenza A virus (strain A/AICHI/2/68) hemagglutinin precursor HA2 (SEQ ID NO:96). Sequence search designations are as in FIG. 20.
FIGS. 27A-F: Respiratory Syncytial Virus (RSV) peptide (SEQ ID NO:97) antiviral and circular dichroism data. FIGS. 27A-C: Peptides derived from the F2 DP178/DP107-like region: [T-22: (SEQ ID NO:121); T-68: (SEQ ID NO:122); T-334: (SEQ ID NO:123); T-371: (SEQ ID NO:124); T-372: (SEQ ID NO:125); T-373: (SEQ ID NO:126); T-374: (SEQ ID NO:127); T-375:(SEQ ID NO:128); T-575:(SEQ ID NO:129)]. Antiviral and CD data. FIGS. 27D-F: Peptides derived from the F1 DP107-like region: [F1-107: (SEQ ID NO:98); T-12: (SEQ ID NO:130); T-13: (SEQ ID NO:131); T-15: (SEQ ID NO:132); T-19: (SEQ ID NO:133); T-28: (SEQ ID NO:134); T-30: (SEQ ID NO:135); T-66: (SEQ ID NO:136); T-576: (SEQ ID NO:137)]. Peptide and CD data.
Antiviral activity (AV) is represented by the following qualitative symbols:
“−”, negative antiviral activity;
“+/−”, antiviral activity at greater than 100 μg/ml;
“+”, antiviral activity at between 50-100 μg/ml;
“++”, antiviral activity at between 20-50 μg/ml;
“+++”, antiviral activity at between 1-20 μg/ml;
“++++”, antiviral activity at <1 μg/ml.
CD data, referring to the level of helicity is represented by the following qualitative symbol:
“−”, no helicity;
“+”, 25-50% helicity;
“++”, 50-75% helicity;
“+++”, 75-100% helicity.
IC50 refers to the concentration of peptide necessary to produce only 50% of the number of syncytial relative to infected control cultures containing no peptide. IC50 values were obtained using purified peptides only.
FIGS. 28A-C: Respiratory Syncytial Virus (RSV) DP178-like region (F1) peptide antiviral and CD data [F1-178: (SEQ ID NO:99); T-71: (SEQ ID NO:138); T-384: (SEQ ID NO:139); T-616: (SEQ ID NO:140); T-617: (SEQ ID NO:141); T-662: (SEQ ID NO:142); T-665: (SEQ ID NO:143); T-671: (SEQ ID NO:144); T-730: (SEQ ID NO:145)]. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-F. IC50 values were obtained using purified peptides only.
FIGS. 29A-E: Peptides derived from the HPIV3 F1 DP107-like region. Peptide antiviral and CD data [HPF1 107: (SEQ ID NO:100); T-42: (SEQ ID NO:146); T-39: (SEQ ID NO:147); T-40: (SEQ ID NO:148); T-45: (SEQ ID NO:149); T-46: (SEQ ID NO:150); T-582: (SEQ ID NO:151)]. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-F. Purified peptides were used to obtain IC50 values, except where the values are marked by an asterisk (*); in such cases the IC50 values were obtained using a crude peptide preparation.
FIGS. 30A-C: Peptides derived from the HPIV3 F1 DP178-like region. Peptide antiviral and CD data [HPF3 178: (SEQ ID NO:101); T-269: (SEQ ID NO:152); T-626: (SEQ ID NO:153); T-383: (SEQ ID NO:154); T-577: (SEQ ID NO:155); T-578: (SEQ ID NO:156); T-579: (SEQ ID NO:157)]. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-F. Purified peptides were used to obtain IC50 values, except where the values are marked by an asterisk (*); in such cases the IC50 values were obtained using a crude peptide preparation.
FIG. 31. Motif search results for simian immunodeficiency virus (SIV) isolate MM251, enveloped polyprotein gp41(SEQ ID NO:102). Sequence search designations are as in FIG. 20.
FIG. 32. Motif search results for Epstein-Barr Virus (Strain B95-8), glycoprotein gp110 precursor (designated gp115). BALF4(SEQ ID NO:103). Sequence search designations are as in FIG. 20.
FIG. 33. Motif search results for Epstein-Barr Virus (Strain B95-8), BZLF1 trans-activator protein (designated EB1 or Zebra)(SEQ ID NO:104). Sequence search designations are as in FIG. 20. Additionally, “@” refers to a well known DNA binding domain and “+” refers to a well known dimerization domain, as defined by Flemington and Speck (Flemington, E. and Speck, S. H., 1990, Proc. Natl. Acad. Sci. USA 87:9459-9463).
FIG. 34. Motif search results for measles virus (strain Edmonston), fusion glycoprotein F1 (SEQ ID NO:105). Sequence search designations are as in FIG. 20.
FIG. 35. Motif search results for Hepatitis B Virus (Subtype AYW), major surface antigen precursor S. (SEQ ID NO:106) Sequence search designations are as in FIG. 20.
FIG. 36. Motif search results for simian Mason-Pfizer monkey virus, enveloped (TM) protein gp20 (SEQ ID NO:107). Sequence search designations are as in FIG. 20.
FIG. 37. Motif search results for Pseudomonas aerginosa, fimbrial protein (SEQ ID NO:110) (Pilin) (SEQ ID NO:108). Sequence search designations are as in FIG. 20.
FIG. 38. Motif search results for Neisseria gonorrhoeae fimbrial protein (Pilin)(SEQ ID NO:109). Sequence search designations are as in FIG. 20.
FIG. 39. Motif search results for Hemophilus influenzae fimbrial protein. Sequence search designations are as in FIG. 20.
FIG. 40. Motif search results for Staphylococcus aureus, toxic shock syndrome toxin-1(SEQ ID NO:111). Sequence search designations are as in FIG. 20.
FIG. 41. Motif search results for Staphylococcus aureus enterotoxin Type E (SEQ ID NO:112). Sequence search designations are as in FIG. 20.
FIG. 42. Motif search results for Staphylococcus aureus enterotoxin A (SEQ ID NO:113). Sequence search designations are as in FIG. 20.
FIG. 43. Motif search results for Escherichia coli, heat labile enterotoxin A (SEQ ID NO:114). Sequence search designations are as in FIG. 20.
FIG. 44. Motif search results for human c-fos proto-oncoprotein (SEQ ID NO:115). Sequence search designations are as in FIG. 20.
FIG. 45. Motif search results for human lupus KU autoantigen protein P70 (SEQ ID NO:117). Sequence search designations are as in FIG. 20.
FIG. 46. Motif search results for human zinc finger protein 10 (SEQ ID NO:117). Sequence search designations are as in FIG. 20.
FIGS. 47A-B: Measles virus (MeV) fusion protein DP178-like region antiviral and CD data [T-252AO: (SEQ ID NO:118); T-268A0: (SEQ ID NO:119)]. Antiviral symbols, CD symbols, and IC50 are as in FIGS. 27A-F.
FIGS. 48A-B: Simian immunodeficiency virus (SIV) TM (fusion) protein DP178-like region antiviral data (SEQ ID NO:120). Antiviral symbols are as in FIGS. 27A-F. “NT”, not tested.
FIGS. 49A-L: DP178-derived peptide antiviral data T50: (SEQ ID NO:159); T234: (SEQ ID NO:161); T235: (SEQ ID NO:162); T570: (SEQ ID NO:163); T381: (SEQ ID NO:164); T677: (SEQ ID NO:165); T589: (SEQ ID NO:166); T590: (SEQ ID NO:167); T591: (SEQ ID NO:168); T270: (SEQ ID NO:169); T271: (SEQ ID NO:170); T273: (SEQ ID NO:171); T608: (SEQ ID NO:172); T609: (SEQ ID NO:173); T610: (SEQ ID NO:174); T611: (SEQ ID NO:175); T612: (SEQ ID NO:176); T595: (SEQ ID NO:177); T95: (SEQ ID NO:178); T96: (SEQ ID NO:179); T97: (SEQ ID NO:180); T98: (SEQ ID NO:181); T99: (SEQ ID NO:182); T103: (SEQ ID NO:183); T212: (SEQ ID NO:184); T213: (SEQ ID NO:185); T214: (SEQ ID NO:186); T215: (SEQ ID NO:187); T216: (SEQ ID NO:188); T229: (SEQ ID NO:189); T230: (SEQ ID NO:190); T231: (SEQ ID NO:191); T379: (SEQ ID NO:192); T701: (SEQ ID NO:193); T702: (SEQ ID NO:194); T703: (SEQ ID NO:195); T704: (SEQ ID NO:196); T705: (SEQ ID NO:197); T706: (SEQ ID NO:198); T156: (SEQ ID NO:199); T90: (SEQ ID NO:200)].
The peptides listed herein were derived from the region surrounding the HIV-1 BRU isolate DP178 region (e.g., gp41 amino acid residues 615-717).
In instances where peptides contained DP178 point mutations, the mutated amino acid residues are shown with a shaded background. In instances in which the test peptide has had an amino and/or carboxy-terminal group added or removed (apart from the standard amido- and acetyl-blocking groups found on such peptides), such modifications are indicated. FIGS. 49A, 49C: The column to the immediate right of the name of the test peptide indicates the size of the test peptide and points out whether the peptide is derived from a one amino acid peptide “walk” across the DP178 region. The next column to the right indicates whether the test peptide contains a point mutation, while the column to its right indicates whether certain amino acid residues have been added to or removed from the DP178-derived amino acid sequence. FIGS. 49E, 49G: The column to the immediate right of the test peptide name indicates whether the peptide represents a DP178 truncation, the next column to the right points out whether the peptide contains a point mutation, and the column to its right indicates whether the peptide contains amino acids which have been added to or removed from the DP178 sequence itself. FIGS. 49I, 49K: The column to the immediate right of the test peptide name indicates whether the test peptide contains a point mutation, while the column to its right indicates whether amino acid residues have been added to or removed from the DP178 sequence itself. IC50 is as defined in FIG. 27A D, FIGS. 27A-F, and IC50 values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC50 was obtained using a crude peptide preparation.
FIG. 50. FIGS. 50A-B: DP107 and DP107 gp41 region truncated peptide antiviral data (SEQ ID NO:201). IC50 as defined in FIGS. 27A-F, and IC50 values were obtained using purified peptides except where marked with an asterisk (*), in which case the IC50 was obtained using a crude peptide preparation.
FIGS. 51A-C: Epstein-Barr virus Strain B95-8 BLZF1 DP178/DP107 analog region peptide walks and electrophoretic mobility shift assay results. The peptides [173-219: (SEQ ID NO:202); 185-230: (SEQ ID NO:203); T-446: (SEQ ID NO:204); 197-242. (SEQ ID NO:205); T-458: (SEQ ID NO:206); 209-246: (SEQ ID NO:207)] (T-423 to T-434, FIG. 51A; T-435 to T-446, FIG. 51B: T-447 to T-449, T-451 to T-458 and T-459 to T-461. FIG. 51C) represent one amino acid residue “walks” through the EBV Zebra protein region from amino acid residue 173 to 246.
The amino acid residue within this region which corresponds to the first amino acid residue of each peptide is listed to the left of each peptide, while the amino acid residue within this region which corresponds to the last amino acid residue of each peptide is listed to the right of each peptide. The length of each test peptide is listed at the far right of each line, under the heading “Res”.
“ACT” refers to a test peptide's ability to inhibit Zebra binding to its response element. “+” refers to a visible, but incomplete, abrogation of the response element/Zebra homodimer complex; “+++” refers to a complete abrogation of the complex; and “−” represents a lack of complex disruption.
FIGS. 52A-B. Hepatitis B virus subtype AYW major surface antigen precursor S protein DP178/DP107 analog region and peptide walks. 52A depicts Domain I (SEQ ID NO:208) (S protein amino acid residues 174-219, which contains a potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain I. 52B depicts Domain II (SEQ ID NO:209) (S protein amino acid residues 233-290), which contains a second potential DP178/DP107 analog region. In addition, peptides are listed which represent one amino acid peptide “walks” through domain II.



5. DETAILED DESCRIPTION OF THE INVENTION
Described herein are peptides which may exhibit antifusogenic activity, antiviral capability, and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. The peptides described include, first, DP178 (SEQ ID NO:1), a gp41-derived 36 amino acid peptide and fragments and analogs of DP178.
In addition, the peptides of the invention described herein include peptides which are DP107 analogs. DP107 (SEQ ID NO:99) is a 38 amino acid peptide corresponding to residues 558 to 595 of the HIV-1LAI transmembrane (TM) gp41 protein. Such DP107 analogs may exhibit antifusogenic capability, antiviral activity or an ability to modulate intracellular processes involving coiled-coil structures.
Further, peptides of the invention include DP107 and DP178 are described herein having amino acid sequences recognized by the 107×178×4, ALLMOTI5, and PLZIP search motifs. Such motifs are also discussed.
Also described here are antifusogenic, antiviral, intracellular modulatory, and diagnostic uses of the peptides of the invention. Further, procedures are described for the use of the peptides of the invention for the identification of compounds exhibiting antifusogenic, antiviral or intracellular modulatory activity.
While not limited to any theory of operation, the following model is proposed to explain the potent anti-HIV activity of DP178, based, in part, on the experiments described in the Examples, infra. In the HIV protein, gp41, DP178 corresponds to a putative α-helix region-located in the C-terminal end of the gp41 ectodomain, and appears to associate with a distal site on gp41 whose interactive structure is influenced by the leucine zipper motif, a coiled-coil structure, referred to as DP107. The association of these two domains may reflect a molecular linkage or “molecular clasp” intimately involved in the fusion process. It is of interest that mutations in the C-terminal α-helix motif of gp41 (i.e., the D178 domain) tend to enhance the fusion ability of gp41, whereas mutations in the leucine zipper region (i.e., the DP107 domain) decrease or abolish the fusion ability of the viral protein. It may be that the leucine zipper motif is involved in membrane fusion while the C-terminal α-helix motif serves as a molecular safety to regulate the availability of the leucine zipper during virus-induced membrane fusion.
On the basis of the foregoing, two models are proposed of gp41-mediated membrane fusion which are schematically shown in FIGS. 11A-B. The reason for proposing two models is that the temporal nature of the interaction between the regions defined by DP107 and DP178 cannot, as yet, be pinpointed. Each model envisions two conformations for gp41—one in a “native” state as it might be found on a resting virion. The other in a “fusogenic” state to reflect conformational changes triggered following binding of gp120 to CD4 and just prior to fusion with the target cell membrane. The strong binding affinity between gp120 and CD4 may actually represent the trigger for the fusion process obviating the need for a pH change such as occurs for viruses that fuse within intracellular vesicles. The two major features of both models are: (1) the leucine zipper sequences (DP107) in each chain of oligomeric enveloped are held apart in the native state and are only allowed access to one another in the fusogenic state so as to form the extremely stable coiled-coils, and (2) association of the DP178 and DP107 sites as they exist in gp41 occur either in the native or fusogenic state. FIG. 11A depicts DP178/DP107 interaction in the native state as a molecular clasp. On the other hand, if one assumes that the most stable form of the enveloped occurs in the fusogenic state, the model in FIG. 11B can be considered.
When synthesized as peptides, both DP107 and DP178 are potent inhibitors of HIV infection and fusion, probably by virtue of their ability to form complexes with viral gp41 and interfere with its fusogenic process; e.g., during the structural transition of the viral protein from the native structure to the fusogenic state, the DP178 and DP107 peptides may gain access to their respective binding sites on the viral gp41, and exert a disruptive influence. DP107 peptides which demonstrate anti-HIV activity are described in Applicants' co-pending application Ser. No. 08/264,531, filed Jun. 23, 1994, which is incorporated by reference herein in its entirety.
As shown in the Examples, infra, a truncated recombinant gp41 protein corresponding to the ectodomain of gp41 containing both DP107 and DP178 domains (excluding the fusion peptide, transmembrane region and cytoplasmic domain of gp41) did not inhibit HIV-1 induced fusion. However, when a single mutation was introduced to disrupt the coiled-coil structure of the DP107 domain—a mutation which results in a total loss of biological activity of DP107 peptides—the inactive recombinant protein was transformed to an active inhibitor of HIV-1 induced fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107 domain.
For clarity of discussion, the invention will be described primarily for DP178 peptide inhibitors of HIV. However, the principles may be analogously applied to other viruses, both enveloped and nonenveloped, and to other non-viral organisms.
5.1. DP178 and DP178-Like Peptides
The DP178 peptide (SEQ ID:1) of the invention corresponds to amino acid residues 638 to 673 of the transmembrane protein gp41 from the HIV-1LAI isolate, and has the 36 amino acid sequence (reading from amino to carboxy terminus):
NH2-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:1
In addition to the full-length DP178 (SEQ ID:1) 36-mer, the peptides of the invention may include truncations of the DP178 (SEQ ID:1) peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP178 (SEQ ID:1) peptides may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide), as shown in Tables I and IA, below.
Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH2) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.







TABLE I





DP178 (SEQ ID NO:1) CARBOXY TRUNCATIONS*

















X-YTS-Z



X-YTSL-Z



X-YTSLI-Z



X-YTSLIH-Z



X-YTSLIHS-Z



X-YTSLIHSL-Z



X-YTSLIHSLI-Z



X-YTSLIHSLIE-Z



X-YTSLIHSLIEE-Z



X-YTSLIHSLIEES-Z



X-YTSLIHSLIEESQ-Z



X-YTSLIHSLIEESQN-Z



X-YTSLIHSLIEESQNQ-Z



X-YTSLIHSLIEESQNQQ-Z



X-YTSLIHSLIEESQNQQE-Z



X-YTSLIHSLIEESQNQQEK-Z



X-YTSLIHSLIEESQNQQEKN-Z



X-YTSLIHSLIEESQNQQEKNE-Z



X-YTSLIHSLIEESQNQQEKNEQ-Z



X-YTSLIHSLIEESQNQQEKNEQE-Z



X-YTSLIHSLIEESQNQQEKNEQEL-Z



X-YTSLIHSLIEESQNQQEKNEQELL-Z



X-YTSLIHSLIEESQNQQEKNEQELLE-Z



X-YTSLIHSLIEESQNQQEKNEQELLEL-Z



X-YTSLIHSLIEESQNQQEKNEQELLELD-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDK-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKW-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWA-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWAS-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASL-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLW-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWN-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNW-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



(SEQ ID NO:1)







(*The one-letter amino acid code is used)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE IA





DP178 (SEQ ID NO:1) AMINO TRUNCATIONS*


















X-NWF-Z




X-WNWF-Z



X-LWNWF-Z



X-SLWNWF-Z



X-ASLWNWF-Z



X-WASLWNWF-Z



X-KWASLWNWF-Z



X-DKWASLWNWF-Z



X-LDKWASLWNWF-Z



X-ELDKWASLWNWF-Z



X-LELDKWASLWNWF-Z



X-LLELDKWASLWNWF-Z



X-ELLELDKWASLWNWF-Z



X-QELLELDKWASLWNWF-Z



X-EQELLELDKWASLWNWF-Z



X-NEQELLELDKWASLWNWF-Z



X-KNEQELLELDKWASLWNWF-Z



X-EKNEQELLELDKWASLWNWF-Z



X-QEKNEQELLELDKWASLWNWF-Z



X-QQEKNEQELLELDKWASLWNWF-Z



X-NQQEKNEQELLELDKWASLWNWF-Z



X-QNQQEKNEQELLELDKWASLWNWF-Z



X-SQNQQEKNEQELLELDKWASLWNWF-Z



X-ESQNQQEKNEQELLELDKWASLWNWF-Z



X-EESQNQQEKNEQELLELDKWASLWNWF-Z



X-IEESQNQQEKNEQELLELDKWASLWNWF-Z



X-LIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-SLIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-HSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-IHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-LIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-SLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-TSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



X-YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF-Z



(SEQ ID NO:1)







(*The one-letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

The peptides of the invention also include DP178-like peptides. “DP178-like”, as used herein, refers, first, to DP178 and DP178 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-178-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107×178×4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP178. The DP178-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP178-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.
HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP178-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP178 peptides of the invention. Utilizing the DP178 and DP178 analog sequences described herein, the skilled artisan can readily compile DP178 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.
The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP178 (SEQ ID:1) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.
Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP178 or DP178 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such insertions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.
Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP178 region of the gp41 protein.
Deletions of DP178 (SEQ ID:1) or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP178 or DP178-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences. One or more such deletions may be introduced into DP178 (SEQ.ID:1) or DP178 truncations, as long as such deletions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.
DP178 analogs are further described, below, in Section 5.3.
5.2. DP107 and DP107-Like Peptides
Further, the peptides of the invention include peptides having amino acid sequences corresponding to DP107 analogs. DP107 is a 38 amino acid peptide which exhibits potent antiviral activity, and corresponds to residues 558 to 595 of HIV-1LAI transmembrane (TM) gp41 protein, as shown here:
NH2-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-COOH (SEQ ID NO:89)
In addition to the full-length DP107 38-mer, the peptides of the invention may include truncations of the DP107 peptide which exhibit antifusogenic activity, antiviral activity and/or the ability to modulate intracellular processes involving coiled-coil peptide structures. Truncations of DP107 peptides may comprise peptides of between 3 and 38 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 38-mer polypeptide), as shown in Tables II and IIA, below. Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH2) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.







TABLE II





DP107 (SEQ ID NO:89) CARBOXY TRUNCATIONS*

















X-NNL-Z



X-NNLL-Z



X-NNLLR-Z



X-NNLLRA-Z



X-NNLLRAI-Z



X-NNLLRAIE-Z



X-NNLLRAIEA-Z



X-NNLLRAIEAQ-Z



X-NNLLRAIEAQQ-Z



X-NNLLRAIEAQQH-Z



X-NNLLRAIEAQQHL-Z



X-NNLLRAIEAQQHLL-Z



X-NNLLRAIEAQQHLLQ-Z



X-NNLLRAIEAQQHLLQL-Z



X-NNLLRAIEAQQHLLQLT-Z



X-NNLLRAIEAQQHLLQLTV-Z



X-NNLLRAIEAQQHLLQLTVW-Z



X-NNLLRAIEAQQHLLQLTVWG-Z



X-NNLLRAIEAQQHLLQLTVWGI-Z



X-NNLLRAIEAQQHLLQLTVWGIK-Z



X-NNLLRAIEAQQHLLQLTVWGIKQ-Z



X-NNLLRAIEAQQHLLQLTVWGIKQL-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQ-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQA-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQAR-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARI-Z



X-NKLLRAIEAQQHLLQLTVWGIKQLQARIL-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILA-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAV-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVE-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVER-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERY-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYL-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLK-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKD-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-



Z (SEQ ID NO:89)







(*The one-letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE IIA





DP107 (SEQ ID NO:89) AMINO TRUNCATIONS*.


















X-KDQ-Z




X-LKDQ-Z



X-YLKDQ-Z



X-RYLKDQ-Z



X-ERYLKDQ-Z



X-VERYLKDQ-Z



X-AVERYLKDQ-Z



X-LAVERYLKDQ-Z



X-ILAVERYLKDQ-Z



X-RILAVERYLKDQ-Z



X-ARILAVERYLKDQ-Z



X-QARILAVERYLKDQ-Z



X-LQARILAVERYLKDQ-Z



X-QLQARILAVERYLKDQ-Z



X-KQLQARILAVERYLKDQ-Z



X-IKQLQARILAVERYLKDQ-Z



X-GIKQLQARILAVERYLKDQ-Z



X-WGIKQLQARILAVERYLKDQ-Z



X-VWGIKQLQARILAVERYLKDQ-Z



X-TVWGIKQLQARILAVERYLKDQ-Z



X-LTVWGIKQLQARILAVERYLKDQ-Z



X-QLTVWGIKQLQARILAVERYLKDQ-Z



X-LQLTVWGIKQLQARILAVERYLKDQ-Z



X-LLQLTVWGIKQLQARILAVERYLKDQ-Z



X-HLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-QHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-QQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-AQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-EAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-IEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-AIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-RAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-LRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-LLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-NLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



X-NNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ-Z



(SEQ ID NO:89)







(*The one-letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

The peptides of the invention also include DP107-like peptides. “DP107-like”, as used herein, refers, first, to DP107 and DP107 truncations which contain one or more amino acid substitutions, insertions and/or deletions. Second, “DP-107-like” refers to peptide sequences identified or recognized by the ALLMOTI5, 107×178×4 and PLZIP search motifs described herein, having structural and/or amino acid motif similarity to DP107. The DP107-like peptides of the invention may exhibit antifusogenic or antiviral activity, or may exhibit the ability to modulate intracellular processes involving coiled-coil peptides. Further, such DP107-like peptides may possess additional advantageous features, such as, for example, increased bioavailability, and/or stability, or reduced host immune recognition.
HIV-1 and HIV-2 enveloped proteins are structurally distinct, but there exists a striking amino acid conservation within the DP107-corresponding regions of HIV-1 and HIV-2. The amino acid conservation is of a periodic nature, suggesting some conservation of structure and/or function. Therefore, one possible class of amino acid substitutions would include those amino acid changes which are predicted to stabilize the structure of the DP107 peptides of the invention. Utilizing the DP107 and DP107 analog sequences described herein, the skilled artisan can readily compile DP107 consensus sequences and ascertain from these, conserved amino acid residues which would represent preferred amino acid substitutions.
The amino acid substitutions may be of a conserved or non-conserved nature. Conserved amino acid substitutions consist of replacing one or more amino acids of the DP107 peptide sequence with amino acids of similar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to aspartic acid (D) amino acid substitution. Non-conserved substitutions consist of replacing one or more amino acids of the DP107 (SEQ ID:25) peptide sequence with amino acids possessing dissimilar charge, size, and/or hydrophobicity characteristics, such as, for example, a glutamic acid (E) to valine (V) substitution.
Amino acid insertions may consist of single amino acid residues or stretches of residues. The insertions may be made at the carboxy or amino terminal end of the DP107 or DP107 truncated peptides, as well as at a position internal to the peptide. Such insertions will generally range from 2 to 15 amino acids in length. It is contemplated that insertions made at either the carboxy or amino terminus of the peptide of interest may be of a broader size range, with about 2 to about 50 amino acids being preferred. One or more such insertions may be introduced into DP107 or DP107 truncations, as long as such insertions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.
Preferred amino or carboxy terminal insertions are peptides ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP107 gp41 amino acid sequence, respectively. Thus, a preferred amino terminal or carboxy terminal amino acid insertion would contain gp41 amino acid sequences found immediately amino to or carboxy to the DP107 region of the gp41 protein.
Deletions of DP107 or DP178 truncations are also within the scope of the invention. Such deletions consist of the removal of one or more amino acids from the DP107 or DP107-like peptide sequence, with the lower limit length of the resulting peptide sequence being 4 to 6 amino acids. Such deletions may involve a single contiguous or greater than one discrete portion of the peptide sequences. One or more such deletions may be introduced into DP107 or DP107 truncations, as long as such deletions result in peptides which may still be recognized by the 107×178×4, ALLMOTI5 or PLZIP search motifs described herein, or may, alternatively, exhibit antifusogenic or antiviral activity, or exhibit the ability to modulate intracellular processes involving coiled-coil peptide structures.
DP107 and DP107 truncations are more fully described in Applicants' co-pending U.S. patent application Ser. No. 08/374,666, filed Jan. 27, 1995, and which is incorporated herein by reference in its entirety. DP107 analogs are further described, below, in Section 5.3.
5.3. DP107 and DP178 Analogs
Peptides corresponding to analogs of the DP178, DP178 truncations, DP107 and DP107 truncation sequences of the invention, described, above, in Sections 5.1 and 5.2 may be found in other viruses, including, for example, non-HIV-1LAI enveloped viruses, non-enveloped viruses and other non-viral organisms.
The term “analog”, as used herein, refers to a peptide which is recognized or identified via the 107×178×4, ALLMOTI5 and/or PLZIP search strategies discussed below. Further, such peptides may exhibit antifusogenic capability, antiviral activity, or the ability to modulate intracellular processes involving coiled-coil structures.
Such DP178 and DP107 analogs may, for example, correspond to peptide sequences present in TM proteins of enveloped viruses and may, additionally correspond to peptide sequences present in non enveloped and non-viral organisms. Such peptides may exhibit antifusogenic activity, antiviral activity, most particularly antiviral activity which is specific to the virus in which their native sequences are found, or may exhibit an ability to modulate intracellular processes involving coiled-coil peptide structures.
DP178 analogs are peptides whose amino acid sequences are comprised of the amino acid sequences of peptide regions of, for example, other (i.e., other than HIV-1LAI) viruses that correspond to the gp41 peptide region from which DP178 (SEQ ID:1) was derived. Such viruses may include, but are not limited to, other HIV-1 isolates and HIV-2 isolates. DP178 analogs derived from the corresponding gp41 peptide region of other (i.e., non HIV-1LAI) HIV-1 isolates may include, for example, peptide sequences as shown below.
NH2-YTNTIYTLLEESQNQQEKNEQELLELDKWASLWNWF-COOH (DP-185; SEQ ID:3);
NH2-YTGIIYNLLEESQNQQEKNEQELLELDKWANLWNWF-COOH (SEQ ID:4);
NH2-YTSLIYSLLEKSQIQQEKNEQELLELDKWASLWNWF-COOH (SEQ ID:5).
SEQ ID:3 (DP-185), SEQ ID:4, and SEQ ID:5 are derived from HIV-1SF2, HIV-1RF, and HIV-1MN isolates, respectively. Underlined amino acid residues refer to those residues that differ from the corresponding position in the DP178 (SEQ ID:1) peptide. One such DP178 analog, DP-185 (SEQ ID:3), is described in the Example presented in Section 6, below, where it is demonstrated that DP-185 (SEQ ID:3) exhibits antiviral activity. The DP178 analogs of the invention may also include truncations, as described above. Further, the analogs of the invention modifications such those described for DP178 analogs in Section 5.1., above. It is preferred that the DP178 analogs of the invention represent peptides whose amino acid sequences correspond to the DP178 region of the gp41 protein, it is also contemplated that the peptides of the invention may, additionally, include amino sequences, ranging from about 2 to about 50 amino acid residues in length, corresponding to gp41 protein regions either amino to or carboxy to the actual DP178 amino acid sequence.
Striking similarities, as shown in FIG. 1, exist within the regions of HIV-1 and HIV-2 isolates which correspond to the DP178 sequence. A DP178 analog derived from the HIV-2NHZ isolate has the 36 amino acid sequence (reading from amino to carboxy terminus):
NH2-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-COOH (SEQ ID:7)
Table III and Table IV show some possible truncations of the HIV-2NHZ DP178 analog, which may comprise peptides of between 3 and 36 amino acid residues (i.e., peptides ranging in size from a tripeptide to a 36-mer polypeptide). Peptide sequences in these tables are listed from amino (left) to carboxy (right) terminus. “X” may represent an amino group (—NH2) and “Z” may represent a carboxyl (—COOH) group. Alternatively, “X” may represent a hydrophobic group, including but not limited to carbobenzyl, dansyl, or T-butoxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. Further, “Z” may represent an amido group; a T-butoxycarbonyl group; or a covalently attached macromolecular group, including but not limited to a lipid-fatty acid conjugate, polyethylene glycol, carbohydrate or peptide group. A preferred “X” or “Z” macromolecular group is a peptide group.







TABLE III





HIV-2NIHZ DP178 ANALOG (SEQ ID NO:7)


CARBOXY TRUNCATIONS*.

















X-LEA-Z



X-LEAN-Z



X-LEANI-Z



X-LEANIS-Z



X-LEANISQ-Z



X-LEANISQS-Z



X-LEANISQSL-Z



X-LEANISQSLE-Z



X-LEANISQSLEQ-Z



X-LEANISQSLEQA-Z



X-LEANISQSLEQAQ-Z



X-LEANISQSLEQAQI-Z



X-LEANISQSLEQAQIQ-Z



X-LEANISQSLEQAQIQQ-Z



X-LEANISQSLEQAQIQQE-Z



X-LEANISQSLEQAQIQQEK-Z



X-LEANISQSLEQAQIQQEKN-Z



X-LEANISQSLEQAQIQQEKNM-Z



X-LEANISQSLEQAQIQQEKNMY-Z



X-LEANISQSLEQAQIQQEKNMYE-Z



X-LEANISQSLEQAQIQQEKMMYEL-Z



X-LEANISQSLEQAQIQQEKNMYELQ-Z



X-LEANISQSLEQAQIQQEKNMYELQK-Z



X-LEANISQSLEQAQIQQEKNMYELQKL-Z



X-LEANISQSLEQAQIQQEKNMYELQKLN-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNS-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSW-Z



X-LEAMISQSLEQAQIQQEKNMYELQKLNSWD-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDV-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVF-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFT-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTN-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNW-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-



Z (SEQ ID NO:7)







(*The one-letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE IV





HIV-2NIHZ DP178 ANALOG (SEQ ID NO:7)


AMINO TRUNCATIONS*.


















X-NWL-Z




X-TNWL-Z



X-FTNWL-Z



X-VFTNWL-Z



X-DVFTNWL-Z



X-WDVFTNWL-Z



X-SWDVFTNWL-Z



X-NSWDVFTNWL-Z



X-LNSWDVFTNWL-Z



X-KLNSWDVFTNWL-Z



X-QKLNSWDVFTNWL-Z



X-LQKLNSWDVFTNWL-Z



X-ELQKLNSWDVFTNWL-Z



X-YELQKLNSWDVFTNWL-Z



X-MYELQKLNSWDVFTNWL-Z



X-NMYELQKLNSWDVFTNWL-Z



X-KNMYELQKLNSWDVFTNWL-Z



X-EKNMYELQKLNSWDVFTNWL-Z



X-QEKNMYELQKLNSWDVFTNWL-Z



X-QQEKNMYELQKLNSWDVFTNWL-Z



X-IQQEKNMYELQKLNSWDVFTNWL-Z



X-QIQQEKNMYELQKLNSWDVFTNWL-Z



X-AQIQQEKNMYELQKLNSWDVFTNWL-Z



X-QAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-EQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-LEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-SLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-QSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-SQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-ISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-NISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-ANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-EANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



X-LEANISQSLEQAQIQQEKNMYELQKLNSWDVFTNWL-Z



(SEQ ID NO:7)







(*The one-letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

DP178 and DP107 analogs are recognized or identified, for example, by utilizing one or more of the 107×178×4, ALLMOTI5 or PLZIP computer-assisted search strategies described and demonstrated, below, in the Examples presented in Sections 9 through 16 and 19 through 25. The search strategy identifies additional peptide regions which are predicted to have structural and/or amino acid sequence features similar to those of DP107 and/or DP178.
The search strategies are described fully, below, in the Example presented in Section 9. While this search strategy is based, in part, on a primary amino acid motif deduced from DP107 and DP178, it is not based solely on searching for primary amino acid sequence homologies, as such protein sequence homologies exist within, but not between major groups of viruses. For example, primary amino acid sequence homology is high within the TM protein of different strains of HIV-1 or within the TM protein of different isolates of simian immunodeficiency virus (SIV). Primary amino acid sequence homology between HIV-1 and SIV, however, is low enough so as not to be useful. It is not possible, therefore, to find peptide regions similar to DP107 or DP178 within other viruses, or within non-viral organisms, whether structurally, or otherwise, based on primary sequence homology, alone.
Further, while it would be potentially useful to identify primary sequence arrangements of amino acids based on, for example, the physical chemical characteristics of different classes of amino acids rather than based on the specific amino acids themselves, such search strategies have, until now, proven inadequate. For example, a computer algorithm designed by Lupas et al. to identify coiled-coil propensities of regions within proteins (Lupas, A., et al., 1991 Science 252:1162-1164) is inadequate for identifying protein regions analogous to DP107 or DP178.
Specifically, analysis of HIV-1 gp160 (containing both gp120 and gp41) using the Lupas algorithm does not identify the coiled-coil region within DP107. It does, however, identify a region within DP178 beginning eight amino acids N-terminal to the start of DP178 and ending eight amino acids from the C-terminus. The DP107 peptide has been shown experimentally to form a stable coiled coil. A search based on the Lupas search algorithm, therefore, would not have identified the DP107 coiled-coil region. Conversely, the Lupas algorithm identified the DP178 region as a potential coiled-coil motif. However, the peptide derived from the DP178 region failed to form a coiled coil in solution.
A possible explanation for the inability of the Lupas search algorithm to accurately identify coiled-coil sequences within the HIV-1 TM, is that the Lupas algorithm is based on the structure of coiled coils from proteins that are not structurally or functionally similar to the TM proteins of viruses, antiviral peptides (e.g. DP107 and DP178) of which are an object of this invention.
The computer search strategy of the invention, as demonstrated in the Examples presented below, in Sections 9 through 16 and 19 through 25, successfully identifies regions of proteins similar to DP107 or DP178. This search strategy was designed to be used with a commercially-available sequence database package, preferably PC/Gene.
A series of search motifs, the 107×178×4, ALLMOTI5 and PLZIP motifs, were designed and engineered to range in stringency from strict to broad, as discussed in this Section and in Section 9, with 107×178×4 being preferred. The sequences identified via such search motifs, such as those listed in Tables V-XIV, below, potentially exhibit antifusogenic, such as antiviral, activity, may additionally be useful in the identification of antifusogenic, such as antiviral, compounds, and are intended to be within the scope of the invention.
Coiled-coiled sequences are thought to consist of heptad amino acid repeats. For ease of description, the amino acid positions within the heptad repeats are sometimes referred to as A through G, with the first position being A, the second B, etc. The motifs used to identify DP107-like and DP178-like sequences herein are designed to specifically search for and identify such heptad repeats. In the descriptions of each of the motifs described, below, amino acids enclosed by brackets, i.e., [ ], designate the only amino acid residues that are acceptable at the given position, while amino acids enclosed by braces, i.e., { }, designate the only amino acids which are unacceptable at the given heptad position. When a set of bracketed or braced amino acids is followed by a number in parentheses i.e., ( ), it refers to the number of subsequent amino acid positions for which the designated set of amino acids hold, e.g, a (2) means “for the next two heptad amino acid positions”.
The ALLMOTI5 is written as follows:
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−
{CDGHP}-{CFP}(2)-{CDGHP}-{CFP}(3)−.
Translating this motif, it would read: “at the first (A) position of the heptad, any amino acid residue except C, D, G, H, or P is acceptable, at the next two (B,C) amino acid positions, any amino acid residue except C, F, or P is acceptable, at the fourth heptad position (D), any amino acid residue except C, D, G, H, or P is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, or P is acceptable. This motif is designed to search for five consecutive heptad repeats (thus the repeat of the first line five times), meaning that it searches for 35-mer sized peptides. It may also be designed to search for 28-mers, by only repeating the initial motif four times. With respect to the ALLMOTI5 motif, a 35-mer search is preferred. Those viral (non-bacteriophage) sequences identified via such an ALLMOTI5 motif are listed in Table V, below, at the end of this Section. The viral sequences listed in Table V potentially exhibit antiviral activity, may be useful in the identification of antiviral compounds, and are intended to be within the scope of the invention. In those instances wherein a single gene exhibits greater than one sequence recognized by the ALLMOTI5 search motif, the amino a cid residue numbers of these sequences are listed under “Area 2”, Area 3”, etc. This convention is used for each of the Tables listed, below, at the end of this Section.
The 107×178×4 motif is written as follows:
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−
[EFIKLNQSTVWY]-{CFMP}(2)-[EFIKLNQSTVWY]-{CFMP}(3)−
Translating this motif, it would read: “at the first (A) position of the heptad, only amino acid residue E, F, I, K, L, N, Q, SI T, V, W, or Y is acceptable, at the next two (B,C) amino acid positions, any amino acid residue except C, F, M or P is acceptable, at the fourth position (D), only amino acid residue E, F, I, K, L, N, Q, S, T, V, W, or Y is acceptable, at the next three (E, F, G) amino acid positions, any amino acid residue except C, F, M or P is acceptable. This motif is designed to search for four consecutive heptad repeats (thus the repeat of the first line four times), meaning that it searches for 28-mer sized peptides. It may also be designed to search for 35-mers, by repeating the initial motif five times. With respect to the 107×178×4 motif, a 28-mer search is preferred.
Those viral (non-bacteriophage) sequences identified via such a 107×178×4 motif are listed in Table VI, below, at the end of this Section, with those viral (non-bacteriophage) sequences listed in Table VII, below at the end of this Section, being preferred.
The 107×178×4 search motif was also utilized to identify non-viral procaryotic protein sequences, as listed in Table VIII, below, at the end of this Section. Further, this search motif was used to reveal a number of human proteins. The results of this human protein 107×178×4 search is listed in Table IX, below, at the end of this Section. The sequences listed in Tables VIII and IX, therefore, reveal peptides which may be useful as antifusogenic compounds or in the identification of antifusogenic compounds, and are intended to be within the scope of the invention.
The PLZIP series of motifs are as listed in FIG. 19. These motifs are designed to identify leucine zipper coiled-coil like heptads wherein at least one proline residue is present at some predefined distance N-terminal to the repeat. These PLZIP motifs find regions of proteins with similarities to HIV-1 DP178 generally located just N-terminal to the transmembrane anchor. These motifs may be translated according to the same convention described above. Each line depicted in FIG. 19 represents a single, complete search motif. “X” in these motifs refers to any amino acid residue. In instances wherein a motif contains two numbers within parentheses, this refers to a variable number of amino acid residues. For example, X (1,12) is translated to “the next one to twelve amino acid residues, inclusive, may be any amino acid”.
Tables X through XIV, below, at the end of this Section, list sequences identified via searches conducted with such PLZIP motifs. Specifically, Table X lists viral sequences identified via PCTLZIP, P1CTLZIP and P2CTLZIP search motifs, Table XI lists viral sequences identified via P3CTLZIP, P4CTLZIP, P5CTLZIP and P6CTLZIP search motifs, Table XII 1sts viral sequences identified via P7CTLZIP, P8CTLZIP and P9CTLZIP search motifs, Table XIII lists viral sequences identified via P12LZIPC searches and Table XIV lists viral sequences identified via P23TLZIPC search motifs The viral sequences listed in these tables represent peptides which potentially exhibit antiviral activity, may be useful in the identification of antiviral compounds, and are intended to be within the scope of the invention.
The Examples presented in Sections 17, 18, 26 and 27 below, demonstrate that viral sequences identified via the motif searches described herein identify substantial antiviral characteristics. Specifically, the Example presented in Section 17 describes peptides with anti-respiratory syncytial virus activity, the Example presented in Section 18 describes peptides with anti-parainfluenza virus activity, the Example presented in Section 26 describes peptides with anti-measles virus activity and the Example presented in Section 27 describes peptides with anti-simian immunodeficiency virus activity.
The DP107 and DP178 analogs may, further, contain any of the additional groups described for DP178, above, in Section 5.1. For example, these peptides may include any of the additional amino-terminal groups as described above for “X” groups, and may also include any of the carboxy-terminal groups as described, above, for “Z” groups.
Additionally, truncations of the identified DP107 and DP178 peptides are among the peptides of the invention. Further, such DP107 and DP178 analogs and DP107/DP178 analog truncations may exhibit one or more amino acid substitutions, insertion, and/or deletions. The DP178 analog amino acid substitutions, insertions and deletions, are as described, above, for DP178-like peptides in Section 5.1. The DP-107 analog amino acid substitutions, insertions and deletions are also as described, above, for DP107-like peptides in Section 5.2.
Tables XV through XXII, below, present representative examples of such DP107/DP178 truncations. Specifically, Table XV presents Respiratory Syncytial Virus F1 region DP107 analog carboxy truncations, Table XVI presents Respiratory Syncytial Virus F1 region DP107 analog amino truncations, Table XVII presents Respiratory Syncytial Virus F1 region DP178 analog carboxy truncations, Table XVIII presents Respiratory Syncytial Virus F1 region DP178 analog amino truncations, Table XIX presents Human Parainfluenza Virus 3 F1 region DP178 analog carboxy truncations, Table XX presents Human Parainfluenza Virus 3 F1 region DP178 analog amino truncations, Table XXI presents Human Parainfluenza Virus 3 F1 region DP107 analog carboxy truncations and Table XXII presents Human Parainfluenza Virus 3 F1 region DP107 analog amino truncations. Further, Table XXIII, below, presents DP107/DP178 analogs and analog truncations which exhibit substantial antiviral activity. These antiviral peptides are grouped according to the specific virus which they inhibit, including respiratory syncytial virus, human parainfluenza virus 3, simian immunodeficiency virus and measles virus.







TABLE V







ALLMOTI5 SEARCH RESULTS SUMMARY


FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS

















PCGENE
ALLMOT15
All Viruses (no bacteriophage)
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA


FILE NAME
PROTEIN
VIRUS
1
2
3
4
5
6
7
8





P170K_TRVPS
POTENTIAL 170 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
113-153









P194K_TRVSY
POTENTIAL 194 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM
144-178
214-248
391-446
634-678
1045-
1135-
1355-
1618-









1079
1176
1376
1655


P55KD_HSV6U
53 8 KD PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
228-262


PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
3-48
100-144


PAANT_HDVDJ
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE D380)
7-48
100-144


PAANT_HDVIT
DELTA ANTIGEN (ALPHA ANTIGEN)
HEPATITIS DELTA VIRUS (ISOLATE ITALIAN)
3-48
100-144


PAANT_HDVL1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE LEBANON-1)
3-48


PAANT_HDVM1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE JAPANESE M-1)
3-48
100-144


PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE JAPANESE M-2)
3-48
100-144


PAANT_HDVNA
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE NAURU)
3-48
100-144


PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE JAPANESE S-1)
1-49
100-144


PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE JAPANESE S-2)
1-49
100-144


PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE WOODCHUCK)
3-48
100-144


PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438)
71-110


PATI1_VACCV
94 KD A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
14-57
420-564
570-625


PATI1_VARV
81 KD A-TYPE INCLUSION PROTEIN
VARIOLA VIRUS
425-525
531-565
571-628


PATI2_HSV11
ALPHA TRANS-INDUCING FACTOR
HERPES SIMPLEX VIRUS (TYPE 1)
304-345


PATI2_HSV1F
ALPHA TRANS-INDUCING FACTOR
HERPES SIMPLEX VIRUS (TYPE 1)
102-139
304-345


PATI2_HSVEB
ALPHA TRANS-INDUCING FACTOR
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
101-147
268-331


PATI2_VACCC
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
79-124
219-263


PATI2_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS
79-124


PATI2_VZVD
ALPHA TRANS-INDUCING FACTOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
298-361
395-429


PATI3_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS
51-95


PATIN_HSV23
ALPHA TRANS-INDUCING PROTEIN (VMW65)
HERPES SIMPLEX VIRUS (TYPE 2)
178-219
324-381


PATIN_HSV2H
ALPHA TRANS-INDUCING PROTEIN (VMW65)
HERPES SIMPLEX VIRUS (TYPE 2)
177-222
324-381


PATIN_HSVBP
ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPES VIRUS TYPE 1
195-256


PATIN_HSVEB
ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPES VIRUS TYPE 1
241-289


PATIN_VZVD
ALPHA TRANS-INDUCING PROTEIN (
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
206-252


PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
14-57
426-526
532-566
572-629
803-989
1106-










1150


PBDL2_EBV
PROTEIN BDLF2
EPSTEIN-BARR VIRUS (STRAIN B95-8)
90-131


PBRL1_EBV
TRANSCRIPTION ACTIVATOR BRLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-187


PCOA1_POVBA
COAT PROTEIN VP1
POLYOMAVIRUS BK
107-141


PCOA1_POVBK
COAT PROTEIN VP1
POLYOMAVIRUS BK
107-141


PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
159-195


PCOA1_SV40
COAT PROTEIN VP1
SIMIAN VIRUS 40
109-143


PCOA2_BFDV
COAT PROTEIN VP2
BUDGERIGAR FLEDGLING DISEASE VIRUS
141-213


PCOA2_POVBA
COAT PROTEIN VP2
POLYOMAVIRUS BK (STRAIN AS)
14-64
317-351


PCOA2_POVBK
COAT PROTEIN VP2
POLYOMAVIRUS BK
14-64
317-351


PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
35-76
153-216


PCOA2_POVHA
COAT PROTEIN VP2
HAMSTER POLYOMAVIRUS
7-48
174-208


PCOA2_POVJC
COAT PROTEIN VP2
POLYOMAVIRUS JC
14-64
233-267


PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
14-78
156-206


PCOA2_POVM3
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN 3)
5-72
137-185


PCOA2_POVMA
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
5-72
137-185


PCOA2_POVMC
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
5-72
137-185


PCOA2_POVMK
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS
15-56
177-211


PCOA2_SV40
COAT PROTEIN VP2
SIMIAN VIRUS 40
14-62
228-262
318-352


PCOAT_ABMVW
COAT PROTEIN
ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA
180-214


PCOAT_ACLSV
COAT PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
154-188


PCOAT_AEDEV
COAT PROTEIN VP1
AEDES DENSONUCLEOSIS VIRUS
243-284


PCOAT_AMCV
COAT PROTEIN
ARTICHOKE MOTTLED CRINKLE VIRUS
36-70
100-134


PCOAT_BLRV
COAT PROTEIN
BEAN LEAFROLL VIRUS
89-123


PCOAT_BMV
COAT PROTEIN
BROME MOSAIC VIRUS
36-73


PCOAT_BYDV1
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
163-197


PCOAT_BYDVM
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
163-197


PCOAT_BYDVP
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
164-198


PCOAT_BYDVR
COAT PROTEIN
BARLEY YELLOW DWARF VIRUS
164-198


PCOAT_CAMVC
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN
56-90
186-223


PCOAT_CAMVD
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
53-91
187-224


PCOAT_CAMVE
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
56-90
186-223


PCOAT_CAMVN
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
56-90
185-222


PCOAT_CAMVS
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS
53-91
187-224


PCOAT_CARMV
COAT PROTEIN
CARNATION MOTTLE VIRUS
13-51


PCOAT_CCMV
COAT PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
141-178


PCOAT_CERV
PROBABLE COAT PROTEIN
CARNATION ETCHED RING VIRUS
192-226


PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
393-435


PCOAT_CLVK
COAT PROTEIN
CASSAVA LATENT VIRUS
197-231


PCOAT_CLVN
COAT PROTEIN
CASSAVA LATENT VIRUS
197-231


PCOAT_CMVFC
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVI
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVP6
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVQ
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVWL
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CMVY
COAT PROTEIN
CUCUMBER MOSAIC VIRUS
153-187


PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
328-365


PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
184-218


PCOAT_CTV36
COAT PROTEIN
CITRUS TRISTEZA VIRUS
79-120


PCOAT_CYMV
COAT PROTEIN
CLOVER YELLOW MOSAIC VIRUS
162-204


PCOAT_EPMV
COAT PROTEIN
EGGPLANT MOSAIC VIRUS
40-74


PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS
432-466
566-600


PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS
502-550
566-600


PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS
519-553
569-603


PCOAT_FMVD
PROBABLE COAT PROTEIN
FIGWORT MOSAIC VIRUS
144-199
206-247
449-483


PCOAT_FXMV
COAT PROTEIN
FOXTAIL MOSAIC VIRUS
168-220


PCOAT_IRV1
CAPSID PROTEIN
TIPULA IRIDESCENT VIRUS
90-124


PCOAT_IRV22
CAPSID PROTEIN
SIMULIUM IRIDESCENT VIRUS
90-124


PCOAT_IRV6
CAPSID PROTEIN
CHILO IRIDESCENT VIRUS
51-85


PCOAT_LSV
COAT PROTEIN
LILY SYMPTOMLESS VIRUS
32-70
255-289


PCOAT_MSTV
COAT PROTEIN
MAIZE STEAK VIRUS
7-76
84-121


PCOAT_MSVK
COAT PROTEIN
MAIZE STEAK VIRUS
187-221


PCOAT_MSVN
COAT PROTEIN
MAIZE STEAK VIRUS
187-221


PCOAT_MSVS
COAT PROTEIN
MAIZE STEAK VIRUS
187-221


PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
105-139


PCOAT_PAVBO
COAT PROTEIN VP2
BOVINE PARVOVIRUS
380-414
444-480


PCOAT_PAVC7
COAT PROTEIN VP1
CANINE PARVOVIRUS
497-531


PCOAT_PEBV
COAT PROTEIN
PEA EARLY BROWNING VIRUS
73-114


PCOAT_POPMV
COAT PROTEIN
POPLAR MOSAIC VIRUS
36-81


PCOAT_PPMVS
COAT PROTEIN
PEPPER MILD MOTTLE VIRUS
104-138


PCOAT_PVSP
COAT PROTEIN
POTATO VIRUS
38-72
251-292


PCOAT_PYMVV
COAT PROTEIN
POTATO YELLOW MOSAIC VIRUS
190-224


PCOAT_RBDV
COAT PROTEIN
RASPBERRY BUSHY DWARF VIRUS
10-44
140-199


PCOAT_RCNMV
COAT PROTEIN
RED CLOVER NECROTIC MOSAIC VIRUS
272-306


PCOAT_RSV
COAT PROTEIN
RICE STRIPE VIRUS
34-68
83-120
259-309


PCOAT_SLCV
COAT PROTEIN
SQUASH LEAF CURL VIRUS
190-224


PCOAT_SMWLM
COAT PROTEIN
SATELLITE MAIZE WHITE LINE MOSAIC VIRUS
66-100


PCOAT_SOCMV
COAT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
128-166


PCOAT_STNV1
COAT PROTEIN
SATELLITE TOBACCO NECROSIS VIRUS 1
2-50


PCOAT_STNV2
COAT PROTEIN
SATELLITE TOBACCO NECROSIS VIRUS 2
38-72


PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
7-55


PCOAT_TAV
COAT PROTEIN
TOMATO ASPERMY VIRUS
14-48


PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
1-37
43-77


PCOAT_TBSVC
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS
44-78
100-134


PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
12-46


PCOAT_TGMV
COAT PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
186-220


PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
103-137


PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMV06
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVCO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
76-138


PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVHR
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS
103-137


PCOAT_TRVCA
COAT PROTEIN
TOBACCO RATTLE VIRUS
71-109


PCOAT_TRVTC
COAT PROTEIN
TOBACCO RATTLE VIRUS
69-103


PCOAT_TYDVA
COAT PROTEIN
TOBACCO YELLOW DWARF VIRUS
2-36


PCOAT_TYMV
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-75


PCOAT_TYMVA
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-75


PCOAT_WCMVO
COAT PROTEIN
WHITE CLOVER MOSAIC VIRUS
163-197


PCORA_HPBGS
CORE ANTIGEN
GROUND SQUIRREL HEPATITIS VIRUS
94-135


PCORA_HPBV9
CORE ANTIGEN
HEPATITIS B VIRUS
111-149


PCORA_WHV1
CORE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 1
62-106


PCORA_WHV8
CORE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
62-106


PD250_ASFB7
PROTEIN D250R
AFRICAN SWINE FEVER VIRUS
198-232


PDNB2_ADE02
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 2
291-336


PDNB2_ADE05
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 5
291-336


PDNB1_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS
215-252
718-752
974-
1027-







1009
1068


PDNB1_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS
338-372
1013-






1070


PDNB1_HSV11
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-








1140


PDNB1_HSV1F
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-








1140


PDNB1_HSV1K
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS
557-595
599-640
769-803
1079-








1140


PDNB1_HSVB2
MAJOR DNA-BINDING PROTEIN
BOVINE HERPES VIRUS TYPE 2
552-591
599-633
1048-







1131


PDNB1_HSVE1
MAJOR DNA-BINDING PROTEIN
EQUINE HERPES VIRUS TYPE 1
273-314


PDNB1_HSVEB
MAJOR DNA-BINDING PROTEIN
EQUINE HERPES VIRUS TYPE 1
617-658
1107-






1148


PDNB1_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPES VIRUS SAIMIRI
222-259
330-367
506-557
873-907


PDNB1_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS
584-618
987-






1125


PDNB1_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS
525-562


PDNB1_VZVD
MAJOR DNA-BINDING PROTEIN
VARICELLA-ZOSTER VIRUS
613-650
1043-






1077


PDNL1_ASFM2
DNA LIGASE
AFRICAN SWINE FEVER VIRUS
72-106


PDNL1_VACCC
DNA LIGASE
VACCINIA VIRUS
395-436


PDNL1_VACCV
DNA LIGASE
VACCINIA VIRUS
395-436


PDNL1_VARV
DNA LIGASE
VARIOLA VIRUS
395-436


PDPOL_ADE02
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 2
667-743


PDPOL_ADE05
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 5
667-743


PDPOL_ADE07
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 7
733-809


PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
665-741


PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
23-64
202-240


PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
247-284


PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
247-284


PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
17-51
80-114
371-412


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-787
1033-






1074


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
5-39


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK ISOLATE
5-39
297-338




S3


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
291-325


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39
224-265
557-595


PDPOL_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
201-235


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
201-235


PDPOL_HSV11
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
511-559


PDPOL_HSV1A
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI
511-559


PDPOL_HSV1K
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
511-559


PDPOL_HSV1S
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
511-559


PDPOL_HSV21
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 186)
512-560


PDPOL_HSVEB
DNA POLYMERASE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
494-528


PDPOL_HSV11
DNA POLYMERASE
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)
33-67
328-366
401-435
706-749
808-858


PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
595-646


PDPOL_VACCC
DNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
627-683
770-818
828-862


PDPOL_VACCV
DNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
627-683
770-818
828-862


PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
626-682
769-817
827-861


PDPOL_VZVD
DNA POLYMERASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
473-533


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
285-326


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
290-331


PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
289-330


PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE)
290-331


PDPOM_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
201-235


PDUT_HSVEB
DEOXYURIDINE 5′-TRIPHOSPHATE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P
135-169



NUCLEOTIDOHY


PDUT_HSVSA
DEOXYURIDINE 5′-TRIPHOSPHATE
HERPES VIRUS SAIMIRI (STRAIN 11)
179-223



NUCLEOTIDOHY


PE1A_ADE41
EARLY E1A 27 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
107-141


PE1BL_ADE40
E1B PROTEIN, LARGE T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
102-166


PE1BS_ADE02
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 2
103-137


PE1BS_ADE05
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 5
103-137


PE1BS_ADE12
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 12
96-131


PE1BS_ADE40
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
100-134


PE1BS_ADE41
E1B PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 41
100-134


PE1BS_ADEM1
E1B PROTEIN, SMALL T-ANTIGEN
MOUSE ADENOVIRUS TYPE 1
119-173


PE314_ADE02
EARLY E3B 14 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
2-39


PE314_ADE03
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 3
8-49


PE314_ADE05
EARLY E3 14.5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
2-39


PE314_ADE07
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
7-48


PE320_ADE35
EARLY E3 20.3 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
70-107


PE321_ADE35
EARLY E3 20.6 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
125-169


PE411_ADE02
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
10-44


PE411_ADE05
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
10-44


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
123-157


PEBN4_EBV
EBNA-4 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
487-521


PEFT1_VARV
EARLY TRANSCRIPTION FACTOR 70 KD SUB-
VARIOLA VIRUS
23-171
307-341



UNIT


PENV1_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
341-375


PENV2_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
341-378


PENV_AVIRE
ENV POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
420-472


PENV_AVIAN
ENV POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
426-478


PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
390-456


PENV_BIV06
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106)
10-44
88-122
221-255
530-610
635-691


PENV_BIV27
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127)
10-44
88-122
159-193
250-284
559-639
664-724


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE FLK)
304-379


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE)
304-379


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE VDM)
304-379


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB285)
304-379


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB59)
304-379


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1)
304-379


PENV_CAEVC
ENV POLYPROTEIN PRECURSOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK)
157-196
615-720
751-785
847-895


PENV_CAEVG
ENV POLYPROTEIN PRECURSOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN G63)
154-193
613-718
749-783
845-893


PENV_E1AV1
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-1)
39-76
436-525
559-593
668-716


PENV_E1AV2
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-2)
39-76
436-525
559-593
658-692


PENV_E1AV3
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-3)
39-76
436-525
559-593
658-716


PENV_E1AV5
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3 2-5)
38-76
437-526
560-594
659-693


PENV_E1AV9
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
39-76
436-525
559-593
658-716


PENV_E1AVC
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
39-76
436-525
559-593
658-716


PENV_E1AVW
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (STRAIN WSU5)
39-76
436-525
559-593
658-716


PENV_E1AVY
ENV POLYPROTEIN PRECURSOR
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING)
39-76
436-525
559-593
658-716


PENV_FENV1
ENV POLYPROTEIN PRECURSOR
FELINE ENDOGENOUS VIRUS ECE1
503-555
567-604


PENV_FTVPE
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA)
610-690
715-756


PENV_FTVSD
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO)
601-688
713-754


PENV_FTVT2
ENVELOPE POLYPROTEIN PRECURSOR
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2)
60-122
609-689
714-755


PENV_FLVC6
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
497-549
561-595


PENV_FLVGL
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1)
478-530
542-576


PENV_FLVLB
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1)
498-550
562-596


PENV_FLVSA
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
475-527
539-573


PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETRO VIRUS
1-41
154-205
321-355
563-693
866-903


PENV_FSVGA
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN)
498-550
562-596


PENV_FSVGB
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN GA)
478-530
542-576


PENV_FSVSM
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN SM)
481-524
545-579


PENV_FSVST
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN SNYDER-THEILEN)
498-532


PENV_GALV
ENV POLYPROTEIN PRECURSOR
GIBBON APE LEUKEMIA VIRUS
523-575
587-621


PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK)
321-383


PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN
316-383




ISOLATE


PENV_HTL1M
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (ISOLATE MT-2)
321-383


PENV_HTLV2
ENV POLYPROTEIN PRECURSOR
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
317-377


PENV_HV1A2
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE
497-593
612-711
766-845


PENV_HV1B1
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE)
505-594
610-712
767-843


PENV_HV1B8
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE)
500-589
605-707
762-838


PENV_HV1BN
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE)
331-365
501-590
609-708
763-831



(CONT


PENV_HV1BR
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)
510-599
615-717
772-841


PENV_HV1C4
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE)
342-376
510-606
626-724
779-855


PENV_HV1EL
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (EL1 ISOLATE)
255-296
502-591
607-709
768-829


PENV_HV1H2
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE)
505-594
610-712
767-836


PENV_HV1H3
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB3 ISOLATE)
505-594
610-712
767-843


PENV_HV1J3
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
343-377
517-605
622-723
778-843


PENV_HV1JR
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)
329-363
497-586
603-704
759-835


PENV_HV1KB
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN KB-1-
88-122
338-372
511-545
555-599
618-677
681-718
772-848




GP32)


PENV_HV1MA
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)
259-300
507-596
617-714
770-825


PENV_HV1MF
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MFA ISOLATE)
503-592
622-710
765-841


PENV_HV1MN
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
336-370
506-595
617-713
774-841


PENV_HV1N5
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5
326-360




ISOL


PENV_HV1ND
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE)
249-290
495-584
601-702
757-825


PENV_HY1OY
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE)
336-370
497-593
610-711
766-842


PENV_HV1PV
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE)
505-594
610-712
767-843


PENV_HV1RH
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE)
344-378
507-603
619-721
776-852


PENV_HV1S1
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162 ISOLATE)
496-585
602-703
758-830


PENV_HV1S3
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF33 ISOLATE)
332-366
494-590
607-708
763-837


PENV_HV1SC
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SC ISOLATE)
331-365
498-594
611-712
767-834


PENV_HV1W1
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ1 ISOLATE)
331-365
498-594
611-712
768-836


PENV_HV1W2
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ2 ISOLATE)
327-361
489-584
602-703
758-827


PENV_HV1Z2
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34
255-296
502-591
610-709
764-831




ISOLAT


PENV_HV1Z3
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 3 ISOLATE)
251-292


PENV_HV1Z6
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6 ISOLATE)
256-297
504-593
609-711
766-840


PENV_HV1Z8
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z-84 ISOLATE)
266-307
512-601
617-675
682-719
774-831


PENV_HV1ZH
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE HZ321
522-594
612-671
675-712
777-839




ISOLA


PENV_HV2BE
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN)
447-481
510-595
617-680


PENV_HV2CA
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2)
512-597
619-709


PENV_HV2D1
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194)
501-586
608-698


PENV_HV2G1
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
439-473
502-587
609-699




GHANA-1)


PENV_HV2NZ
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z)
488-587
609-699


PENV_HV2RO
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD)
511-596
618-708


PENV_HV2S2
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
442-476
505-590
612-702




ST/24.1C#


PENV_HV2SB
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY)
526-588
614-700


PENV_HV2ST
ENVELOPE POLYPROTEIN GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST)
442-476
505-590
612-702


PENV_IPMAE
ENV POLYPROTEIN PRECURSOR
MOUSE INTRACISTERNAL A-PARTICLE
367-422
465-527


PENV_JSRV
ENV POLYPROTEIN PRECURSOR
SHEEP PULMONARY ADENOMATOSIS VIRUS
403-455
571-605


PENV_MCFF
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS
473-525
537-571


PENV_MCFF3
ENV POLYPROTEIN PRECURSOR (COAT
MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS
474-526
538-572



POLYPROTE
(ISOLA


PENV_MLVAV
ENV POLYPROTEIN PRECURSOR
AKV MURINE LEUKEMIA VIRUS
503-555
567-601


PENV_MLVCB
ENV POLYPROTEIN PRECURSOR
CAS-BR-E MURINE LEUKEMIA VIRUS
498-550
562-596


PENV_MLVF5
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
520-564
576-610


PENV_MLVFF
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
520-564
576-610


PENV_MLVFP
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211)
520-564
576-610


PENV_MLVHO
ENV POLYPROTEIN PRECURSOR
HOMULV MURINE LEUKEMIA VIRUS
504-551
563-597


PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
40-92
104-138


PENV_MLVMO
ENV POLYPROTEIN PRECURSOR
MOLONEY MURINE LEUKEMIA VIRUS
502-554
566-600


PENV_MLVRD
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
497-549
561-595


PENV_MLVRK
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN)
497-549
561-595


PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
477-539
556-612


PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
477-539
556-612


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
408-474


PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
43-95
107-141


PENV_OMVVS
ENV POLYPROTEIN PRECURSOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
22-64
185-223
664-746
780-816


PENV_RMCFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
484-528
540-574


PENV_RSFFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER SPLEEN FOCUS-FORMING VIRUS
342-376


PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
1-41
101-140
154-205
321-355
563-651
658-693
866-904


PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
5-46
158-209
319-357
560-706
863-901


PENV_SIVAI
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
269-310
551-623
643-693


PENV_SIVAG
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
556-628
651-699
808-852


PENV_SIVAI
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
257-291
336-370
535-607
627-684
792-840


PENV_SIVAT
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
264-298
549-621
644-692
796-833


PENV_SIVCZ
ENVELOPE POLYPROTEIN GP160 PRECURSOR
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))
253-291
330-365
512-584
669-703
803-837


PENV_SIVGB
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
566-654
677-725


PENV_SIVM1
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)
114-151
465-506
528-613
635-725
809-864


PENV_SIVM2
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (MM251 ISOLATE)
71-109
161-219
245-286


PENV_SIVMK
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
464-505
540-612
638-724


PENV_SIVML
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE)
464-505
540-612
638-724


PENV_SIVS4
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMM4 ISOLATE)
466-509
517-616
638-728
812-853


PENV_SIVSP
ENVELOPE POLYPROTEIN GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE)
470-513
521-620
642-732
811-848


PENV_SMRVH
ENV POLYPROTEIN PRECURSOR
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
400-466


PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
409-475


PENV_VILV
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS (STRAIN 1514)
21-62
184-222
637-740
773-809


PENV_VILV1
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1K2S1)
21-62
184-222
643-746
780-816


PENV_VILV2
ENV POLYPROTEIN PRECURSOR
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)
21-62
184-222
645-748
782-818


PERBA_AVIER
ERBA ONCOGENE PROTEIN
AVIAN ERYTHROBLASTOSIS VIRUS (STRAIN ES4)
106-140


PETF1_FOWP1
EARLY TRANSCRIPTION FACTOR 70 KD SUB-
FOWLPOX VIRUS (STRAIN FP-1)
190-224
553-587



UNIT


PETF1_SFVKA
EARLY TRANSCRIPTION FACTOR 70 KD SUB-
SHOPE FIBROMA VIRUS (STRAIN KASZA)
37-71
267-340
550-587



UNIT


PETF1_VACCC
EARLY TRANSCRIPTION FACTOR 70 KD SUB-
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-71
307-341



UNIT


PETF1_VACCV
EARLY TRANSCRIPTION FACTOR 70 KD SUB-
VACCINIA VIRUS (STRAIN WR)
23-71
307-341



UNIT


PETF2_VACCC
EARLY TRANSCRIPTION FACTOR 82 KD SUB-
VACCINIA VIRUS (STRAIN COPENHAGEN)
52-97
174-208



UNIT


PETF2_VARV
EARLY TRANSCRIPTION FACTOR 82 KD SUB-
VARIOLA VIRUS
52-97
174-208



UNIT


PEXON_HCMVA
ALKALINE EXONUCLEASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
80-114


PEXON_HSVEB
ALKALINE EXONUCLEASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
89-141


PEXON_PRVN3
ALKALINE EXONUCLEASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
82-120


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-157
342-383


PFIB2_ADE40
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
182-237


PFIB2_ADE41
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
182-223


PFIBP_ADE03
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 3
156-194


PFIBF_ADE07
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 7
176-210


PFIBP_ADE40
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
303-352


PVIBP_ADE41
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
320-366


PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
181-215
585-626


PFOSX_MSVFR
V-FOS/FOX TRANSFORMING PROTEIN
FBR MURINE OSTEOSARCOMA VIRUS
131-169


PFOS_AVINK
P55-V-FOS TRANSFORMING PROTEIN
AVIAN RETROVIRUS NK24
109-152


PFOS_MSVFB
P55-V-FOS TRANSFORMING PROTEIN
FBI MURINE OSTEOSARCOMA VIRUS
155-193


PGAGC_AVISC
P47(GAG-CRK) PROTEIN
AVIAN SARCOMA VIRUS (STRAIN CT10)
57-101


PGAG_AVEV1
GAG POLYPROTEIN
AVIAN ENDOGENOUS VIRUS EV-1
57-94


PGAG_AVEV2
GAG POLYPROTEIN
AVIAN ENDOGENOUS ROUS-ASSOCIATED VIRUS-0
6-43


PGAG_AVIMC
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
57-94


PGAG_AVIMD
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HBI
57-94


PGAG_AVISU
CORE PROTEIN P19
AVIAN SARCOMA VIRUS (STRAIN UR2)
57-94


PGAG_AVISY
GAG POLYPROTEIN
AVIAN SARCOMA VIRUS (STRAIN Y73)
57-94


PGAG_BIV06
GAG POLYPROTEIN (P53)
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106)
1-41


PGAG_EIAVY
GAG POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
61-118


PGAG_FIVPE
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA)
76-110


PGAG_FIVSD
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO)
76-110


PGAG_FIVT2
GAG POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2)
76-110


PGAG_FLV
GAG POLYPROTEIN
FELINE LEUKEMIA VIRUS
496-537


PGAG_FOAMV
GAG POLYPROTEIN
HUMAN SPUMARETROVIRUS
130-186
391-425
439-480
607-655


PGAG_FSVMD
GAG POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN MCDONOUGH)
499-534


PGAG_FUJSV
GAG POLYPROTEIN
FUJINAMI SARCOMA VIRUS
57-94


PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
393-444


PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2
87-133
294-328




ISOLATE


PGAG_HV1B1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE)
90-131
292-326


PGAG_HV1B5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE)
90-131
292-326


PGAG_HV1BR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)
90-131
292-326


PGAG_HV1C4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE)
90-131
292-326


PGAG_HV1EL
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (EL1 ISOLATE)
93-131
292-326


PGAG_HV1H2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE)
90-131
292-326


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
87-131
292-326


PGAG_HV1JR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)
87-131
292-326


PGAG_HV1MA
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)
90-137


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
87-134
295-329


PGAG_HV1N5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5
90-131
292-326




ISOL


PGAG_HV1ND
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE)
87-128
289-323


PGAG_HV1OY
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OY1 ISOLATE)
90-131
292-326


PGAG_HV1PV
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE)
90-131
292-326


PGAG_HV1RH
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE)
90-131
292-326


PGAG_HV1U4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN
87-127




UGANDAN


PGAG_HV1W2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ2 ISOLATE)
292-326


PGAG_HV1Z2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34
87-132
293-327




ISOLAT


PGAG_HV2SB
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY)
292-326


PGAG_IPHA
RETROVIRUS-RELATED GAG POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
93-127
320-357


PGAG_IPMA
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
67-103


PGAG_IPMAE
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
89-133
138-172


PGAG_JSRV
GAG POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
470-504


PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
83-151
156-190


PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
83-151
156-190


PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
222-260


PGAG_RSVP
GAG POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
57-94


PGAG_SCVLA
MAJOR COAT PROTEIN
SACCHAROMYCES CEREVISIAE VIRUS L-A (SCV-L-A)
102-139
490-531


PGAG_SFV1
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
128-177
378-416
583-634


PGAG_SFV3L
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
373-407
435-522
591-632


PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
302-336


PGAG_SIVAG
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
306-340


PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
183-217
473-507


PGAG_SIVAT
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
302-336


PGAG_SIVCZ
GAG POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))
301-335


PGAG_SIVGB
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
163-204
223-267
283-317


PGAG_SMSAV
GAG POLYPROTEIN
SIMIAN SARCOMA VIRUS
394-431


PGAG_HSV11
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
172-206
769-820


PHEL1_HSV2H
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
468-502
670-721


PHEL1_HSVSA
PROBABLE HELICASE
HERPES VIRUS SAIMIRI (STRAIN 11)
158-203
413-449
599-633


PHEL1_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
445-517
782-821


PHEMA_CVBF
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
208-242


PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE PRECURSOR
HUMAN CORONAVIRUS (STRAIN LY-138)
208-242


PHEMA_CVBM
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
208-242


PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC),
208-242


PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE PRECURSOR
HUMAN CORONAVIRUS (STRAIN OC43)
208-242


PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/AICHI/2/68)
380-456


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
364-440


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BUDGER/GAR/HOKKAIDO/1/77)
378-454


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/ALABAMA/1/75)
378-454


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
108-142
375-475
494-528


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1/83)
360-452
487-532


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1370/
360-452
487-532


PHEMA_IACKS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/SCOTLAND/59)
377-469
504-549


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/VICTORIA/1/85)
112-146
377-469


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76)
378-454


PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
377-476
495-547


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/78/76)
380-453


PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/35/76)
379-478
506-548


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/CZECHOSLOVAKIA/56)
378-454


PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
21-55
377-472


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/5/77)
364-440


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
364-440


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/33/80)
364-440


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/7/82)
364-440


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/21/82)
364-440


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/9/85)
364-440


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/10/85)
364-440


PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/IRELAND/113/83)
379-471
506-551


PHEMA_IADM1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/546/76
21-55


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74)
380-456


PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/NEW YORK/12/78)
21-55


PHEMA_INDNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/NEW ZEALAND/31/76)
378-454


PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/60)
21-55


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
380-456


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77
380-456


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
377-477




VIRUS/ROSTOCK


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GREY TEAL/AUSTRALIA/2/79)
378-454


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
378-473


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84)
377-476


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/ALGIERS/72)
379-455


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/63)
112-146
360-484
503-537


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/73)
112-146
360-484
503-537


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQIOMEC DETRPOT164)
360-484
503-537


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/DETROIT/1/64)
360-484
503-537


PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/FONTAINEBLEAU/76)
379-455


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/86)
379-455


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/87)
379-455


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/LEXINGTON/1/66)
112-145
360-484
503-537


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
112-146
360-484
503-537


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63
379-455


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW MARKET/76)
379-455


PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW MARKET/1/77)
112-146
360-484
503-537


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
112-146
360-484
503-537


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/ROMANIA/80)
379-455


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SANTIAGO/1/85)
379-455


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SAO PAULO/1/76)
132-146
360-484
501-537


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SWITZERLAND/137/72)
112-146
360-484
503-537


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
379-455


PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA VIRUS (STRAIN A/EQUINE/TOYO/71)
379-455


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/URUGUAY/1/63)
379-455


PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57
375-467
502-547


PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
376-478
506-541


PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
376-478
506-548


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/ASTRAKHAN/244/82)
377-453


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/ASTRAKHAN/263/82)
382-458


PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78)
380-456


PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71)
380-456


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/102/72)
380-456


PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86)
364-440


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
108-142
375-475


PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
380-456


PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/PILOT WHALE/MAIN/328/84)
378-477
496-534


PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
376-478
506-548


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
378-454




JERSE


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/133/82)
378-354


PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SHEARWATER/AUSTRALIA/72)
379-474
506-552


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/STARLING/VICTORIA/5156/85)
112-146
377-469


PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/IRELAND/1378/83)
379-471
506-551


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80
378-454


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/7732/66)
392-470
504-548


PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/6118/68)
378-454
493-540


PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
30-64
374-474


PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/WISCONSIN/1/66)
373-472
487-539


PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75)
21-55


PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
387-456


PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/USSR/90/77
376-478
506-548


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
381-457


PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
375-477
505-547


PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/COLORADO/1/77)
380-456


PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78)
364-440


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
364-440


PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/INDIANA/1726/88)
379-478
506-548


PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/NEW JERSEY/11/76)
379-478
506-547


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/UKKEL/1/84
380-456


PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87
388-473


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BONN/43)
378-463


PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82)
385-471


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
381-463


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/LEE/40)
387-472


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
377-462


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86)
381-468


PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
386-471


PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
386-471


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/USSR/100/83)
379-464


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85)
381-466


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87)
388-473


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
483-571


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83)
471-559


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54)
471-559


PHEMA_INCHY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83)
470-558


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66)
484-572


PHEMA_INCKY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN C/KYOTO/41/82)
470-558


PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80)
470-558


PHEMA_INCNA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN C/NARA/82)
470-558


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81)
471-559


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81)
471-559


PHEMA_INCP3
MEASLES VIRUS (STRAIN HALLE)
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82)
471-559


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47
471-559


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81)
471-559


PHEMA_MEASE
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN EDMONSTON)
46-90


PHEMA_MEASH
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN HALLE)
46-90


PHEMA_MEASI
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN IP-3-CA)
46-87


PHEMA_MEASY
HEMAGGLUTININ-NEURAMINIDASE
MEASLES VIRUS (STRAIN YAMAGATA-1)
46-87


PHEMA_MUMP1
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL-1
34-99


PHEMA_MUMPM
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
34-99


PHEMA_NUMPR
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN RW)
34-99


PHEMA_MUMPS
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL)
34-99


PHEMA_NDVA
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
8-52
477-529




VICTORIA/32)


PHEMA_NDVB
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
1-49


PHEMA_NDVD
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN D26/76)
1-52


PHEMA_NDVM
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)
1-52


PHEMA_NDVQ
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)
1-32


PHEMA_NDVTG
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48)
1-49


PHEMA_NDVU
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
1-52


PHEMA_PHODV
HEMAGGLUTININ-NEURAMINIDASE
PHOCINE DISTEMPER VIRUS
39-73


PHEMA_P11HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN WASHINGTON/1957)
66-110


PHEMA_PI2H
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS
247-281


PHEMA_PI2HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
247-281


PHEMA_PI3B
HEMAGGLUTININ-NEURAMINIDASE
BOVINE PARAINFLUENZA 3 VIRUS
38-93


PHEMA_PI3H4
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
13-110
394-428


PHEMA_PI3HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN AUS/124854/74)
20-110
394-428


PHEMA_PI3HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/545/80)
13-110
394-423


PHEMA_PI3HU
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/9305/52)
13-110
394-428


PHEMA_PI3HV
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/12677/53)
13-110
394-428


PHEMA_PI3HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/641/79)
13-110
394-428


PHEMA_PI3HX
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/1511/73)
13-110
394-428


PHEMA_PI4HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
54-88


PHEMA_RACVI
HEMAGGLUTININ PRECURSOR
RACCOON POXVIRUS
166-214
256-290


PHEMA_RINDK
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN KABETE O)
46-87


PHEMA_RINDL
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN L)
46-87
191-225


PHEMA_SEND5
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
57-110


PHEMA_SENDF
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN FUSHIMI)
57-110


PHEMA_SENDH
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HARRIS)
57-110


PHEMA_SENDJ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HVJ)
57-110


PHEMA_SENDZ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z)
57-110


PHEMA_SV41
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 41
18-52
387-421


PHEMA_SV5
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (STRAIN W3)
27-82


PHEMA_SV5LN
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (ISOLATE HUMAN/LN)
27-82


PHEMA_VARV
HEMAGGLUTININ PRECURSOR
VARIOLA VIRUS
177-211


PHEX3_ADE02
PERIPENTONAL HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
90-134


PHEX3_ADE05
PERIPENTONAL HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
90-134


PHEX9_ADE02
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
85-134


PHEX9_ADE05
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
85-134


PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 7, AND HUMAN ADENOVIRUS
93-138




TYPE


PHEX9_ADE12
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 12
88-137


PHEX9_ADE41
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 41
67-126


PHEX9_ADEC2
HEXON-ASSOCIATED PROTEIN
CANINE ADENOVIRUS TYPE 2
53-103


PHEX9_ADENT
HEXON-ASSOCIATED PROTEIN
TUPAIA ADENOVIRUS
61-109


PHEX_ADE02
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 2
341-386
433-467
583-624


PHEXA_ADE05
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 5
330-379


PHEX_ADE40
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 40
303-352
401-449
553-587


PHEX_ADE41
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 41
306-355
555-589


PHEX_ADEB3
HEXON PROTEIN
BOVINE ADENOVIRUS TYPE 3
301-346
385-419
544-578
705-739


PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
320-395
455-489


PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
110-151


PIBMP_CAMV4
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D4)
3-44
378-419


PIBMP_CAMVB
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BARI 1)
379-420


PIBMP_CAMVC
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
3-37
378-419


PIBMP_CAMVD
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
3-44
378-419


PIBMP_CAMVE
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BDC)
3-37
378-419


PIBMP_CAMVJ
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN S-JAPAN)
3-37
378-419


PIBMP_CAMVN
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
3-37
378-419


PIBMP_CAMVP
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
3-37
374-419


PIBMP_CAMVS
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
3-37
378-419


PIBMP_CERV
INCLUSION BODY MATRIX PROTEIN
CARNATION ETCHED RING VIRUS
3-37


PIBMP_FMVD
INCLUSION BODY MATRIX PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
1-51
372-406


PIBMP_SOCMV
INCLUSION BODY MATRIX PROTEIN

1-48
132-179


PIC18_HCMVA
PROBABLE PROCESSING AND TRANSPORT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
53-98
290-324
498-532



PROTEIN


PIC18_HSV11
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
331-365


PIC18_HSV1A
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI)
331-365


PIC18_HSV1F
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
324-362


PIC18_HSVB2
PROBABLE PROCESSING AND TRANSPORT
BOVINE HERPES VIRUS TYPE 2 (STRAIN BMV)
466-500



PROTEIN


PIC18_HSVEB
PROBABLE PROCESSING AND TRANSPORT
HERPES VIRUS TYPE 1 (ISOLATE HVS25A)
341-375



PROTEIN


PIC18_HSVSA
PROBABLE PROCESSING AND TRANSPORT
HERPES VIRUS SAIMIRI (STRAIN 11)
58-99
361-395



PROTEIN


PIC18_MCMVS
PROBABLE PROCESSING AND TRANSPORT
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
60-112
290-340
647-691



PROTEIN


PIC18_PRVIF
PROBABLE PROCESSING AND TRANSPORT
PSEUDORABIES VIRUS (STRAIN INDIANA-FUNKHAUSER/BECKE
299-333
303-337



PROTEIN


PICP0_HSVBJ
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
BOVINE HERPES VIRUS TYPE 1 (STRAIN JURA)
190-224



ICP0


PICP0_HSVBK
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
BOVINE HERPES VIRUS TYPE 1 (STRAIN K22)
190-224



ICP0


PICP4_HSVMG
TRANS-ACTING TRANSCRIPTIONAL
MAREK'S DISEASE HERPES VIRUS (STRAIN GA)
1022-



ACTIVATOR PR

1056


PICP4_VZVD
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
920-954



ICP4


PIE63_HCMVA
TRANSCRIPTIONAL REGULATOR IE63
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
207-241



HOMOLOG


PIE63_HSV11
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
241-275


PIE63_HSVEB
TRANSCRIPTIONAL REGULATOR IE63
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
282-316



HOMOLOG


PIE63_VZVD
TRANSCRIPTIONAL REGULATOR IE63
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
195-229
258-306



HOMOLOG


PIE68_HSVE4
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
87-121


PIE68_HSVEB
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
99-133


PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
48-85


PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
13-47


PIR12_HCMVA
HYPOTHETICAL PROTEIN ORL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-162


PKABL_FSVHY
TYROSINE-PROTEIN KINASE TRANSFORMING
FELINE SARCOMA VIRUS (STRAIN HARDY-ZUCKERMAN 2)
280-314



PROT


PKABL_MLVAB
TYROSINE-PROTEIN KINASE TRANSFORMING
ABELSON MURINE LEUKEMIA VIRUS
217-251



PROT


PKAKT_MLVAT
AKT KINASE TRANSFORMING PROTEIN
AKT8 MURINE LEUKEMIA VIRUS
172-227
263-304


PKFES_FSVGA
TYROSINE-PROTEIN KINASE TRANSFORMING
FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN)
23-64
104-178



PROT


PKFGR_FSVGR
TYROSINE-PROTEIN KINASE TRANSFORMING
FELINE SARCOMA VIRUS (STRAIN GARDNER-RASHEED)
218-252



PROT


PKFMS_FSVMD
FMS TYROSINE KINASE TRANSFORMING
FELINE SARCOMA VIRUS (STRAIN MCDONOUGH)
313-362
638-679
812-849



PROTEIN


PKFPS_AVISP
TYROSINE-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN PRCII)
65-69



PROT


PKFPS_FUJSV
TYROSINE-PROTEIN KINASE TRANSFORMING
FUJINAMI SARCOMA VIRUS
65-99
152-251
348-398



PROT


PKITH_AMEPV
THYMIDINE KINASE
AMSACTA MOOREI ENTOMOPOXVIRUS
47-81


PKITH_CAPVK
THYMIDINE KINASE
CAPRIPOXVIRUS (STRAIN KS-1
38-82


PKITH_EBV
THYMIDINE KINASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
228-262
431-472


PKITH_HSV11
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 11)
90-124


PKITH_HSV1C
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN CL101)
90-124


PKITH_HSV1E
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
90-124


PKITH_HSV1K
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
90-124


PKITH_HSV1S
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
90-124


PKITH_HSV23
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
91-125


PKITH_HSVBM
THYMIDINE KINASE
BOVINE HERPES VIRUS TYPE 3 (STRAIN WC11)
616-665


PKITH_HSVE4
THYMIDINE KINASE
EQUINE HERPES VIRUS TYPE 4 (STRAIN 1942)
19-53
178-219


PKITH_HSVEB
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
19-53
178-230


PKITH_HSVF
THYMIDINE KINASE
FELINE HERPESVIRUS (FELID HERPESVIRUS 1)
180-214


PKITH_HSVMR
THYMIDINE KINASE
MARMOSET HERPESVIRUS
52-86


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
337-389


PKITH_PRVN3
THYMIDINE KINASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
161-202


PKMIL_AVIMH
MIL SERINE/THREONINE-PROTEIN KINASE
AVIAN RETROVIRUS M112
69-103



TRANSF


PKR15_HSV11
GENE 15 PROTEIN KINASE
ICTALURID HERPES VIRUS 1
190-224


PRK2_HSV11
PROBABLE SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 7)
57-91
281-315



KINASE


PKR74_HSV11
GENE 74 PROTEIN KINASE
ICTALURID HERPES VIRUS 1
487-528
597-631


PKRAF_MSV36
RAF SERINE/THREONINE-PROTEIN KINASE
MURINE SARCOMA VIRUS 3611
11-45



TRANSF


PKRB1_VACCC
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
127-168


PKRB1_VACCV
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
127-168


PKRB1_VARV
30 KD PROTEIN KINASE HOMOLOG
VARIOLA VIRUS
123-171


PKRB2_VACCC
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN COPENHAGEN)
147-181


PKRB2_VACCV
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN WR)
147-181


PKRF1_VACCC
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN COPENHAGEN)
169-203


PKRF1_VACCP
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN L-IVP)
136-170


PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
169-203


PKROS_AVISU
ROS TYROSINE KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN UR2)
111-145



PROTEIN


PKRYK_AVIR3
TYROSINE-PROTEIN KINASE TRANSFORMING
AVIAN RETROVIRUS RPL30
15-66



PROT


PKTHY_VACCV
THYMIDYLATE KINASE
VACCINIA VIRUS (STRAIN WR), (STRAIN COPENHAGEN)
135-169


PKYES_AVISY
TYROSINE-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN Y73)
174-233



PROT


PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
441-475


PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
223-264


PL100_ADE40
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 40
191-232
408-442


PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
199-233


PL52_ADE02
LATE LI 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
238-284
301-349


PL52_ADE05
LATE LI 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
238-284
301-349


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
144-179
294-338


PMCEL_SFVKA
MRNA CAPPING ENZYME
SHOPE FIBROMA VIRUS (STRAIN KASZA)
54-152
622-656


PMCEL_VACCC
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-41
623-657


PMCEL_VACCV
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN WR)
1-41
623-657


PMCEL_VARV
MRNA CAPPING ENZYME
VARIOLA VIRUS
1-39
623-657


PMCES_VACCC
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN COPENHAGEN)
72-137
245-286


PMCES_VACCV
MRNA CAPPING ENZYME
VACCINIA VIRUS (STRAIN WR)
72-137
245-286


PMCES_VARV
MRNA CAPPING ENZYME
VARIOLA VIRUS
72-137
245-286


PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
116-157
279-313
738-772


PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
53-90


PMOVP_PPMVS
MOVEMENT PROTEIN
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
26-66


PMOVP_TMGMV
MOVEMENT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
29-66


PMOVP_TMVTO
MOVEMENT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
32-66


PMOVP_TOMVA
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LIIA)
32-80


PMOVP_TOMVL
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LII)
32-80


PMTC1_CHVN1
MODIFICATION METHYLASE CVIB1
CHLORELLA VIRUS NC-IA
222-256


PMTC2_CHVP1
MODIFICATION METHYLASE CVIAI1
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
116-164


PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS CMII
229-266
375-419


PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
230-267
376-420


PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HB1
230-267
376-420


PMYC_AVIME
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS MH2E21
377-421


PMYC_AV1OK
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS 0K10
224-261
370-414


PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-437


PMYC_FLVTT
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PROVIRUS FTT
393-437


PNCA2_CVMA5
NUCLEOCAPSID PROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
12-46


PNCAP_AINOV
NUCLEOCAPSID PROTEIN
AINO VIRUS
177-211


PNCAP_BEV
NUCLEOCAPSID PROTEIN
BERNE VIRUS
46-83
122-156


PNCAP_BRSVA
NUCLEOCAPSID PROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
62-108
163-200
248-303
343-383


PNCAP_BUNGE
NUCLEOCAPSID PROTEIN
BUNYAVIRUS GERMISTON
176-228


PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
176-229


PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
176-229


PNCAP_BUNYW
NUCLEOCAPSID PROTEIN
BUNYAMWERA VIRUS
175-228


PNCAP_CCHFV
NUCLEOCAPSID PROTEIN
CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS (ISOLATE
223-306
427-461




C6803


PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS (STRAIN ONDERSTERPOORT)
137-174
179-217
354-402


PNCAP_CHAV
NUCLEOCAPSID PROTEIN
CHANDIPURA VIRUS (STRAIN 1653514)
40-84
321-369


PNCAP_CVBF
NUCLEOCAPSID PROTEIN
BOVINE CORONAVIRUS (STRAIN F15)
349-383


PNCAP_CVBM
NUCLEOCAPSID PROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
349-383


PNCAP_CVCAE
NUCLEOCAPSID PROTEIN
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
165-227


PNCAP_CVHOC
NUCLEOCAPSID PROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
349-383


PNCAP_CVMJH
NUCLEOCAPSID PROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
12-46


PNCAP_CVPFS
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
149-206


PNCAP_CVPPU
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
165-227


PNCAP_CVPR8
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS (STRAIN 86/137004/BRIT
149-228


PNCAP_CVPRM
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
149-228


PNCAP_CVRSD
NUCLEOCAPSID PROTEIN
RAT CORONAVIRUS (STRAIN 681)
12-46


PNCAP_CVTKE
NUCLEOCAPSID PROTEIN
TURKEY ENTERIC CORONAVIRUS
349-383


PNCAP_DUGBV
NUCLEOCAPSID PROTEIN
DUGBE VIRUS
230-306


PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
151-206


PNCAP_HANTV
NUCLEOCAPSID PROTEIN
HANTAAN VIRUS (STRAIN 76-118)
1-35
40-74
333-381


PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
233-297


PNCAP_HRSVI
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI
62-145
163-200
248-303
343-380


PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
62-145
163-200
248-303
343-380


PNCAP_IBVG
NUCLEOCAPSID PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN GRAY)
186-227


PNCAP_IBVK
NUCLEOCAPSID PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
186-220


PNCAP_JUNIN
NUCLEOCAPSID PROTEIN
JUNIN ARENAVIRUS
96-151


PNCAP_LASSG
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN GA391)
65-113
126-174


PNCAP_LASSJ
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN JOSIAH)
65-113
122-174
467-504


PNCAP_LDV
NUCLEOCAPSID PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS (
3-40


PNCAP_LYCVA
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN
45-117
460-497




ARMSTRON


PNCAP_LYCVW
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE)
45-79
83-117


PNCAP_MAGV
NUCLEOCAPSID PROTEIN
MAGUARI VIRUS
175-228


PNCAP_MEASE
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN EDMONSTON)
188-226
363-411


PNCAP_MEASH
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN HALLE)
181-226
363-411


PNCAP_MEASI
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
188-226
363-411


PNCAP_MEASY
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
188-226
363-411


PNCAP_MOPEI
NUCLEOCAPSID PROTEIN
MOPEIA VIRUS
65-106
471-505


PNCAP_MUMP1
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
214-255
500-534


PNCAP_MUMPM
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
214-255


PNCAP_PHV
NUCLEOCAPSID PROTEIN
PROSPECT HILL VIRUS
1-35
40-74
337-392


PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
212-272
441-510


PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN WASHINGTON/1957)
212-272
441-510


PNCAP_PI2HT
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
214-266
344-378


PNCAP_PI3B
NUCLEOCAPSID PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
200-403
446-490


PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
87-135
207-266
344-490
440-491


PNCAP_PI4HA
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
58-94
191-267


PNCAP_PI4HB
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA AB VIRUS (STRAIN 68-333)
58-94
191-267


PNCAP_PIARV
NUCLEOCAPSID PROTEIN
PICHINDE ARENAVIRUS
65-112


PNCAP_PIRYV
NUCLEOCAPSID PROTEIN
PIRY VIRUS
71-116
325-359


PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
1-35
40-75
337-392


PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
1-35
40-75
337-385


PNCAP_PVM
NUCLEOCAPSID PROTEIN
PNEUMONIA VIRUS OF MICE
93-141
248-303
344-388


PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
133-167


PNCAP_SEND5
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
212-272
345-404


PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
212-272
345-404


PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
212-272
345-408


PNCAP_SEOUS
NUCLEOCAPSID PROTEIN
SEOUL VIRUS (STRAIN SR-11)
1-35
40-74
333-381


PNCAP_SV41
NUCLEOCAPSID PROTEIN
SIMIAN VIRUS 41
215-267
372-406
418-466


PNCAP_SYNV
NUCLEOCAPSID PROTEIN
SONCHUS YELLOW NET VIRUS
332-366


PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
50-84
230-264


PNCAP_TOSV
NUCLEOCAPSID PROTEIN
TOSCANA VIRUS
215-249


PNCAP_TSWVB
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNHI/BR
79-120


PNCAP_TSWVH
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS (HAWAIIAN ISOLATE)
79-120


PNCAP_TSWVL
NUCLEOCAPSID PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
79-120


PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
51-102


PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
249-325


PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN MAKAH)
142-180
249-325


PNCAP_VSVIG
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN G
42-108


PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA
67-115


PNCAP_VSVSJ
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
42-115


PNEF_HV2BE
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN)
7-48


PNEF_HV2D1
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194)
7-41


PNEF_HV2RO
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD)
112-160


PNEF_HV2SB
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY)
109-150


PNEF_HV2ST
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST)
108-149


PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
96-140


PNEF_SIVS4
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE)
9-43
233-267


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/BLACK DUCK/AUSTRALIA/702/78
47-81


PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82)
33-74


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
50-91


PNRAM_IACKQ
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1370/
349-383


PNRAM_IACKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/8125/
349-383


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/DUCK/GERMANY/49)
14-48


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/WEYBRID
14-48
194-229


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/74
10-47
193-227


PNRAM_IAHKI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/81)
5-44
361-402


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
50-91


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
50-91


PNRAM_IAMEI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71H-
50-88




A/BELLAMY/42N


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
49-91




JERSE


PNRAM_IASH2
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/SHEARWATER/AUSTRALIA/72)
10-44


PNRAM_IATKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
7-41


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75)
49-83


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
50-91


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84)
49-91


PNRAM_INBBE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
5-46
348-382


PNRAM_INBHK
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
5-46
349-383


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
5-46
349-383


PNRAM_INBLN
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LENINGRAD/179/86), (STRAIN
5-39
348-382




B/M


PNRAM_INBMD
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
5-39
349-383


PNRAM_INBMF
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/3/89)
5-46
348-382


PNRAM_INBOR
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
5-46
349-383


PNRAM_INBSI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
5-39
349-383


PNRAM_INBUS
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/USSR/100/83)
5-39
349-383


PNRAM_INBVI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85
5-39
348-382


PNS2_SIDEV
PROBABLE STRUCTURAL PROTEIN
BOMBYX DENSONUCLEOSIS VIRUS
790-828



PRECURSOR


PNSS_INSVN
NON-STRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS (STRAIN NL-07)
95-129
204-238


PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNHI/BR
3-37


PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
3-37


PNTP1_AMEPV
NUCLEOSIDE TRIPHOSPHATASE 1
AMSACTA MOOREI ENTOMOPOXVIRUS
28-69
110-144


PNTP1_CBEPV
NUCLEOSIDE TRIPHOSPHATASE 1
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
122-169
415-449
514-555


PNTP1_VACCC
NUCLEOSIDE TRIPHOSPHATASE 1
VACCINIA VIRUS (STRAIN COPENHAGEN)
56-90
248-289
549-599


PNTP1_VACCV
NUCLEOSIDE TRIPHOSPHATASE 1
VACCINIA VIRUS (STRAIN WR)
56-90
248-289
549-599


PNTP1_VARV
NUCLEOSIDE TRIPHOSPHATASE 1
VARIOLA VIRUS
154-195
455-505


PP100_HSV6U
MAJOR ANTIGENIC STRUCTURAL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
189-223
689-735


PPAP1_VACCC
POLY(A) POLYMERASE CATALYTIC SUBUNIT
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-180


PPAP1_VACCV
POLY(A) POLYMERASE CATALYTIC SUBUNIT
VACCINIA VIRUS (STRAIN WR)
121-180


PPAP1_VARV
POLY(A) POLYMERASE CATALYTIC SUBUNIT
VARIOLA VIRUS
121-180


PPAP2_CAPVK
POLY(A) POLYMERASE REGULATORY SUBUNIT
CAPRIPOXVIRUS (STRAIN KS-1)
112-146


PPAP2_FOWPV
POLY(A) POLYMERASE REGULATORY SUBUNIT
FOWLPOX VIRUS
95-154


PPAP2_VACCC
POLY(A) POLYMERASE REGULATORY SUBUNIT
VACCINIA VIRUS (STRAIN COPENHAGEN)
203-249


PPAP2_VACCV
POLY(A) POLYMERASE REGULATORY SUBUNIT
VACCINIA VIRUS (STRAIN WR)
203-249


PPAP2_VARV
POLY(A) POLYMERASE REGULATORY SUBUNIT
VARIOLA VIRUS
203-249


PPE12_NPVAC
12.1 KD PROTEIN IN PE 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
15-56
60-105


PPE12_NPVOP
11.5 KD PROTEIN IN P26 5′REGION
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
11-98




VIRUS


PPE38_NPVAC
MAJOR IMMEDIATE EARLY PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
19-77
197-249


PPE38_NPVOP
MAJOR IMMEDIATE EARLY PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
190-240




VIRUS


PPE48_NPVAC
48.3 KD PROTEIN IN PE-P26 INTERGENIC
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
4-42
48-89
97-131



REGION


PPE48_NPVOP
47.3 KD PROTEIN IN PE-P26 INTERGENIC
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
47-82
165-199



REGION
VIRUS


PPIV2_ADE07
MATURATION PROTEIN
HUMAN ADENOVIRUS TYPE 7
414-448


PPIV6_ADE02
PROTEIN VI PRECURSOR
HUMAN ADENOVIRUS TYPE 2
31-71


PPIV6_ADE05
PROTEIN VI PRECURSOR
HUMAN ADENOVIRUS TYPE 5
37-71


PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE)
329-363
743-777
957-991
1265-
2229-
2309-
2368-








1299
2266
2352
2404


PPOL1_BAYMJ
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN 11-1)
329-363
671-705
743-777
957-994
1265-
2227-
2307-
2366-









1299
2264
2305
2402


PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS
120-161
165-216
230-273
377-415


PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
170-212
480-519
636-677
691-725
1157-
1378-
1906-









1196
1412
1943


PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
223-270
929-977


PPOL1_TRSVR
RNA1 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY)
161-206


PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE)
240-281
669-732
739-773
787-828


PPOL2_BAYMJ
GENEOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1)
669-732
739-773
787-828


PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
365-406
542-602


PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
4-38


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY)
158-206
334-368


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
849-886
1008-
1382-
1459-
1576-






1064
1416
1507
1617


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL)
244-289
446-491
629-663
1033-
1303-
1392-
1869-
2226-








1074
1344
1443
1910
2260


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1)
245-289
446-491
629-663
1033-
1303-
1392-
1779-
2136-








1074
1344
1443
1820
2170


PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
96-130


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
9-43
562-596
664-698
1045-
1498-
1607-
1805-
1901-








1100
1546
1648
1839
1946


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
15-49
1040-
1895-






1086
1940


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
15-49
1021-
1867-






1067
1921


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
15-49
1024-
1879-






1070
1924


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
14-59
642-681
1022-
1877-







1068
1922


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
14-59
1024-
1870-






1070
1924


PPOLG_CYVV
GENOME POLYPROTEIN
CLOVER YELLOW VEIN VIRUS
120-154


PPOLG_DEN18
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN 836-1)
74-108


PPOLG_DEN1A
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN AHF 82-80)
74-108


PPOLG_DEN1C
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN CV1636/77)
74-108


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90)
74-108
832-873
960-994
1142-
1386-
1614-
2518-
2946-








1129
1420
1648
2554
3016


PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN WESTERN PACIFIC)
74-108
833-874
961-995
1143-








1180


PPOLG_DEN21
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M1)
448-492


PPOLG_DEN22
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M2)
448-495


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
74-108
728-777
961-955
1146-
1246-
1418-
1615-
2517-








1180
1280
1452
1649
2551


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 1668-PDK53)
74-108
728-777
961-995
1146-
1246-
1418-
1615-
2485-








1180
1280
1452
1649
2551


PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
728-777


PPOLG_DEN2H
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TH-36)
497-546


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
74-108
728-777
961-995
1146-
1246-
1418-
1615-
2517-








1180
1280
1452
1649
2551


PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C)
213-247
398-432


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
74-108
728-777
832-875
961-995
1146-
1246-
1418-
1615-









1380
1280
1452
1649


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
448-497
552-595
681-715
866-900
966-
1205-









1000
1239


PPOLG_DEN2U
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PUO-218)
614-663


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
830-872
959-993
1385-
2224-
2480-
2704-
2940-
2980-







1419
2258
2521
2738
2978
3014


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
957-993
1380-
2514-
2701-
2941-
2977-






1414
2555
2735
2975
3011


PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY)
213-259
1079-






1113


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
1074-
1472-
1522-
1665-
1789-





1115
1518
1570
1706
1823


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-B
145-179
1076-
1474-
1524-
1667-




NONDIADETO

1117
1520
1572
1708


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-D
145-179
1076-
1474-
1524-
1667-




DIABETOGEN

1117
1520
1572
1708


PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS (STRAIN 37A)
145-179


PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
78-112


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61)
221-255
294-328
578-612
1103-
1493-
2165-








1153
1528
2200


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12)
220-254
293-327
577-611
1103-
1493-
2164-








1164
1528
2199


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAINS O1K AND O1BFS)
221-255
1103-
1493-
2164-






1153
1528
2199


PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN C1-SANTA PAU
87-128
693-728




[C-S


PPOLG_FMDVT
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN C1)
221-255
283-317
577-611


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
364-398


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
440-493
626-660
695-729
1033-
1190-
1307-
1779-
2136-








1070
1235
1343
1820
2170





2466-
2525-
2667-
3057-
3152-
3406-





2500
2559
2708
3098
3193
3440


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
440-493
626-660
695-729
1033-
1173-
1779-
2136-
2388-








1070
1235
1820
2170
2436


PPOLG_HCVBK


2466-
2525-
2667-
3057-
3152-
3406-
3521-





2500
2559
2708
3098
3195
3440
3562


PPOLG_HCVE0
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
357-398
2328-






2365


PPOLG_HCVM
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE EC10)
65-99


PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
364-398


PPOLG_HCVH7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476)
364-398


PPOLG_HCVH8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT27)
236-270


PPOLG_HCVHK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT18)
248-282


PPOLG_HCVJ2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-KF)
357-398


PPOLG_HCVJ5
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J2)
357-398


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J5)
364-398


PPOLG_HCVJ7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
364-401
1716-
2082-






1750
2116


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J7)
364-398


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-18)
364-398
1716-
2082-
2468-
2538-






1750
2116
2502
2572


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
357-405
2331-






2365


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
357-391
2331-






2365


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
357-398
2328-
2444-






2365
2503


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
2-43
101-135
203-237
870-904
1021-
1117-









1055
1151


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
2-43
101-135
203-237
870-904
1021-
1117-









1055
1151


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
2-43
101-135
203-237
870-904
1021-
1117-









1055
1151


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
2-43
101-135
203-237


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
80-114
182-216


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
2-43
101-135
203-237
870-904
1021-
1103-









1055
1151


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
2-43
101-135
203-217
870-904
1021-
1103-









1055
1151


PPOLG_HPAVS
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
2-43
101-135
203-237
870-904
1021-
1103-









1055
1158


PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27)
6-47
105-139
207-241
849-908
1025-
1115-
1158-









1059
1155
1198


PPOLG_HRV14
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN CY-145)
2-43
101-135
203-237


PPOLG_HRV1A
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1020-
1393-
1479-
1877-





1054
1427
1513
1920


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS IA (HRV-1A)
362-396


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
387-421
863-904
1133-







1168


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
856-897
1126-
1552-






1169
1593


PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
1566-





1607


PPOLG_IBDVO
GENOME POLYPROTEIN
HUMAN ENTERO VIRUS 70 (STRAIN 1670/71)
359-397
876-917
1032-
1403-
1896-







1088
1441
1934


PPOLG_JAEV1
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN OH)
134-168
250-291
475-524


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14)
74-122
211-256
539-576
980-
1409-
2463-
2739-
2782-








1014
1450
2497
2777
2823





3322-
3387-





3359
3428


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V))
74-122
211-256
539-576
980-
1409-
2463-
2739-
2782-








1014
1450
2497
2777
2823





3322-
3387-





3359
3428


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982)
74-128
211-256
539-576
980-
1409-
2463-
2739-
2782-








1014
1450
2497
2777
2823





3322-
3387-





3359
3428


PPOLG_KUNJM
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA)
7-48
138-183
467-504
908-942
1337-









1378


PPOLG_LANVT
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
74-108
207-251
851-885
2464-
2528-
2740-
3325-
3389-








2498
2579
2778
3559
3423


PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
68-102
431-465
952-996
1431-
1932-
2536-
2967-
3003-








1472
1966
2591
3001
3037





3102-





3145


PPOLG_LIV
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
68-102
431-465


PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (LI)
68-123
231-272
431-465


PPOLG_MCFA
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
151-185


PPOLG_MVEV
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT (CFA FLAVIVIRUS)
80-114
908-942
2049-
2630-
3036-
3290-







2087
2689
3095
3341


PPOLG_OMV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
67-115
209-253
853-887
979-
1408-








1013
1449


PPOLG_PEMVC
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
481-515
946-984
1072-







1106


PPOLG_POLIM
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE)
55-100
207-248
377-411
704-738
827-862
877-947
1021-
1167-











1055
1201





1488-
1787-
1948-
2202-
2258-
2805-
3003-





1529
1821
1982
2236
2310
2839
3037


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
9-43
1046-
1414-
1500-
1806-
1902-






1101
1448
1548
1840
1947


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
9-43
899-933
1047-
1415-
1501-
1610-
1808-
1904-







1102
1449
1549
1651
1842
1949


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
9-43
897-831
1045-
1413-
1502-
1608-
1806-
1902-







1100
1447
1547
1649
1840
1947


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
9-43
897-831
1045-
1413-
1502-
1608-
1806-
1902-







1100
1447
1547
1649
1840
1947


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
9-43
896-930
1044-
1412-
1498-
1607-
1805-
1901-







1098
1446
1546
1648
1839
1946


PPOLG_PPVD
GENOME POLYPROTEIN
PULIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND P3/LEON
9-43
896-930
1044-
1412-
1498-
1607-
1805-
1901-




12A[1]B)


1099
1446
1546
1648
1839
1946


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
164-208
441-503
728-769
815-867
921-955
1741-










1782


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
116-157
784-818
1146-







1197


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
164-208
403-437
440-502
727-768
814-873
920-954
1740-











1781


PPOLG_PRSVH
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
164-208
403-437
440-502
727-768
814-866
920-954
1740-











1781


PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA)
68-102
434-468


PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1)
325-359


PPOLG_PSBMV
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN W)
325-359


PPOLG_PVYC
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1)
253-315
355-389
529-589
935-976
984-
1080-
1588-
1808-









1018
1177
1627
1860





1971-
2379-
2712-
2870-





2015
2413
2746
2907


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C)
131-196
701-735
802-856


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
144-181
701-735
802-863
901-949
1401-
1492-
1728-
1777-









1441
1526
1772
1818





2272-





2306


PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
140-196
211-245
701-735
802-863
1401-
1492-
1728-
1777-









1441
1526
1772
1818





1929-





1970


PPOLG_PWVSE
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
140-196
211-245
701-735
802-856


PPOLG_PWVTB
GENOME POLYPROTEIN
PASSIONFRUIT WOODINESS VIRUS (STRAIN SEVERE)
203-237


PPOLG_PYFVI
GENOME POLYPROTEIN
PASSIONFRUIT WOODINESS VIRUS (STRAIN TIP BRIGHT)
203-237


PPOLG_STEVM
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
194-228
1112-
1379-
1858-
1950-
2703-






1172
1413
1899
1991
2737


PPOLG_SVDVH
GENOME POLYPROTEIN
ST. LOUIS ENCEPHALITIS VIRUS (STRAIN MS1-7)
106-143
673-707
739-773
975-
1404-








1009
1438


PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76)
15-49
1024-
1779-
1890-






1070
1813
1924


PPOLG_TBEVS
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN UKG/27/72)
15-49
1024-
1890-






1070
1924


PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN)
68-140
231-272
431-465
1152-
1431-
1929-
2182-
2535-








1192
1472
1966
2216
2590





2965-
3051-
3100-





2999
3092
3143


PPOLG_TEV
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE)
68-140
231-272
431-465
1158-
1431-
1932-
2536-
2967-








1192
1492
1966
2591
3001





3003-
3053-
3102-





3037
3094
3145


PPOLG_TMEVB
THEILER'S MURINE ENCEPHALOMYELITIS
TOBACCO ETCH VIRUS
73-124
166-222
540-584
770-782
828-925
1148-
1416-
1494-



VIRUS (S






1192
1460
1535





1668-
1747-
1792-
2395-
2787-





1702
1781
1826
2434
2822


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN
1306-
1483-
1601-




BEAN
1340
1518
1635


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN DA)
1304-
1481-
1599-





1338
1516
1663


PPOLG_TUMV
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN GD
1306-
1483-
1601-




VII)
1340
1518
1635


PPOLG_TVMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
216-259
314-362
494-528
768-839
1443-









1477


PPOLG_WMV2
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
34-68
408-449
667-704
761-813
851-885
969-
1031-
1643-










1017
1072
1677





1686-
2316-
2701-
2814-





1725
2374
2749
2848


PPOLG_WNV
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
68-105
202-236


PPOLG_YEFV1
GENOME POLYPROTEIN
WEST NILE VIRUS
74-108
207-251
847-881
973-
1413-
2461-
2525-
2737-








1007
1447
2495
2578
2778





3320-
3385-





3357
3426


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
418-452
525-563
728-768
1388-
2231-
2477-
2958-
3097-








1444
2276
2565
2996
3143


PPOLG_YEFV8
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204)
418-452
525-563
728-768
1388-
2231-
2477-
2958-
3097-








1444
2276
2565
2996
3143


PPOLH_POL1M
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 1899/81)
75-116
418-452
525-563
728-768


PPOLN_EEVVT
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
9-43
1047-
1415-
1501-
1610-
1803-
1904-






1102
1449
1549
1651
1842
1949


PPOLN_FCVC6
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN
345-382
898-932
1945-




TRINIDAD


1979


PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
510-544


PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9)
4-45
369-410
986-
1023-







1020
1061


PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS B VIRUS (STRAIN BURMA)
338-379
1139-






1177


PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS B VIRUS (STRAIN MEXICO)
338-379


PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS B VIRUS (STRAIN MYANMAR)
338-379
1139-






1184


PPOLN_MIDDV
NON-STRUCTURAL POLYPROTEIN
HEPATITIS B VIRUS (STRAIN PAKISTAN)
337-378
1138-






1376


PPOLN_ONNVG
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
922-977


PPOLN_RHDV
NONSTRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
899-933
1942-
2444-






1986
2502


PPOLN_RRVN
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
188-234
306-347
409-457
1657-








1716


PPOLN_RRVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB 5092)
895-929
1928-
2414-






1962
2467


PPOLN_RUBVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
597-631
1083-






1136


PPOLN_SFV
NONSTRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
1506-
1551-
1730-
1862-





1540
1585
1767
1896


PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1094-
2358-





1128
2392


PPOLN_SINDV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)
919-971
1491-
1961-
2444-






1525
1996
2478


PPOLR_EPMV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
1491-
1959-
2442-





1525
1994
2476


PPOLS_EEEV
RNA REPLICASE POLYPROTEIN
EGGPLANT MOSAIC VIRUS
899-933
1127-1161


PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
373-406
914-951


PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS (STRAIN VA33[TEN
373-407
915-952




BRO


PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TC-83)
1216-





1250


PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN
1216-




TRINIDAD
1250


PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70)
134-168
231-286
470-523


PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN
134-168
231-286
470-523




AUSTRALI


PPOLS_IBDVE
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN CU-1)
134-168
231-286
470-523


PPOLS_IBDVP
STRUCTURAL POLYPROTEIN VP4
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN E)
134-168
231-286
304-340


PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN PBG-98)
115-149
212-267
451-504


PPOLS_IPNVJ
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN STC)
134-168
249-283
470-523


PPOLS_IPNVN
STRUCTURAL POLYPROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE
69-103
723-785




JASPER)


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS (STRAIN N1)
716-786


PPOLS_RRV2
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
1204-





1238


PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN 213970)
35-69


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
369-403
939-973


PPOLS_RUBVH
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
939-973


PPOLS_RUBVR
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN HPV77)
999-





1036


PPOLS_RUBVT
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN RA27/3)
999-





1036


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
999-





1036


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)
362-396


PPOLS_SINDW
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
362-396


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (WILD TYPE SB DERIVED FROM STRAIN AR339)
34-68


PPOL_BAEVM
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
913-947


PPOL_BLVAU
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
42-80
676-743
794-832
1001-








1042


PPOL_BLVJ
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE)
625-673


PPOL_CAEVC
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1)
625-673


PPOL_CAMVD
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK)
879-934


PPOL_COYMV
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
177-211


PPOL_EIAV9
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
87-121
333-367
447-498
838-876
896-930
1310-










1351


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
513-566
1022-






1056


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
513-566
1022-






1056


PPOL_FENV1
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING)
512-565
1021-






1055


PPOL_FIVPE
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
533-600
523-659
858-899


PPOL_FIVSD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA)
429-473
606-663


PPOL_FIVT2
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO)
428-473
606-642


PPOL_FMVD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2)
428-472
595-662


PPOL_FOAMV
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
403-437


PPOL_GALV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY VIRUS)
140-174
217-256
285-326


PPOL_HTL1A
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
528-562
673-740


PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK)
670-711


PPOL_HV1A2
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN
670-711




ISOLATE)


PPOL_HV1B1
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (ARV2/SF2 ISOLATE
501-537
606-664


PPOL_HV1B5
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (BH10 ISOLATE)
513-549
639-676


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE)
513-549
618-676


PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)
513-549
618-676


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
500-536
626-663


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE)
501-537
605-664


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)
505-541
610-668


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)
476-536
601-663


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
504-540
609-667


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5
501-537
627-664




ISOL


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE)
500-536
626-663


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE)
501-537
606-664


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICCENCY VIRUS TYPE 1 (PV22 ISOLATE)
513-549
693-676


PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE)
500-536
605-663


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN
500-536
601-663




UGANDAN


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 ISOLA
500-536
626-663


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN)
49-83
484-582
653-687
817-851


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2)
356-390
464-562
632-666


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194)
502-600
671-705


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7)
376-410
484-526
529-577
653-687


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE GHANA-
464-562
633-667




1)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z)
44-78
356-390
464-529
633-667


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD)
357-391
465-563
634-668


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY)
46-80
473-562
633-667


PPOL_IPHA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST)
484-518
522-577
653-687


PPOL_JSRV
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
462-503


PPOL_MLVAK
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
190-231


PPOL_MLVAV
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
325-392


PPOL_MLVF5
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
677-744


PPOL_MLVFF
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
682-749


PPOL_MLVFP
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
682-749


PPOL_MLVMO
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211)
682-749


PPOL_MLVRD
POL POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
677-744


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
677-744


PPOL_MPMV
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN)
62-129


PPOL_OMVVS
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
470-504
578-613


PPOL_RSVP
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
470-505
855-910


PPOL_RTBV
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
646-684


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-96
101-135
176-236
325-362
433-474
1005-
1405











1039
1439


PPOL_SFV1
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)
7-44
59-96
101-135
176-236
325-362
433-474
1005-
1405-











1039
1439


PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
349-383
427-464
494-535


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
124-165
429-467
496-530


PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
351-315
637-678
737-771
938-979


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM266 ISOLATE)
45-86


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
477-516
642-683
742-783


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
175-209
476-515
641-700
942-983
1020-









1054


PPOL_SIVCZ
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
657-691
757-798


PPOL_SIVGB
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))
527-561
626-688


PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
9-57
446-483
629-673
793-827
912-946


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)
415-519
654-688


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
485-519
654-688


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE)
448-482
617-651


PPOL_SOCMV
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE)
451-485
620-654


PPOL_SRV1
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
247-295
372-416


PPOL_VILV
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
470-504
578-613


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
489-524
874-929


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1)
489-524
874-929


PPP15_HCMVA
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)
489-524
874-929


PPR73_MMTVB
LARGE STRUCTURAL PHOSPHOPROTEIN PP150
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
116-150
187-221


PPR73_MMTVC
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
152-200


PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
20-79


PPR7L_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
61-95
142-201


PPR7R_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
145-204
270-311


PPYHD_CPVBM
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
141-200
266-307


PPYHD_NPVAC
POLYHEDRIN PRECURSOR
BOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS
13-85


PPYHD_NPVAS
POLYHEDRIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
13-47


PPYHD_NPVBM
POLYHEDRIN
AGROTIS SEGETUM NUCLEAR POLYHEDROSIS VIRUS
14-48


PPYHD_NPVBS
POLYHEDRIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
12-54


PPYHD_NPVLD
POLYHEDRIN
BUZURA SUPPRESSARIA NUCLEAR POLYHEDROSIS VIRUS
14-48


PPYHD_NPVMB
POLYHEDRIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR POLYHEDROSIS
14-48




V


PPYHD_NPVOP
POLYHEDRIN
MAMESTRA BRASSICAE NUCLEAR POLYHEDROSIS VIRUS
14-48


PPYHD_NPVOS
POLYHEDRIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
13-47




VIRUS


PPYHD_NPVPF
POLYHEDRIN
ORGYIA PSEUDOTSUGATA SINGLE CAPSID NUCLEAR POLYHED
14-48


PPYHD_NPVSE
POLYHEDRIN
PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID POLYHEDROSIS
14-48


PPYHD_NPVSF
POLYHEDRIN
SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS VIRUS
14-48




(STRAIN


PPYHD_NPVSL
POLYHEDRIN
SPODOPTERA FRUGIPERDA NUCLEAR POLYHEDROSIS VIRUS
14-48


PRASK_MSVKI
POLYHEDRIN
SPODOPTERA LITTORALIS NUCLEAR POLYHEDROSIS VIRUS
17-51


PREV_BIV27
TRANSFORMING PROTEIN 21
KIRSTEN MURINE SARCOMA VIRUS
142-176


PREV_EIAV9
REV PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127)
77-115


PREV_EIAVC
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
51-89


PREV_EIAVY
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
51-89


PREV_HV112
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING)
81-119


PREV_HV1A2
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CLONE 12)
35-69


PREV_HV1B1
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISO-
32-69




LATE


PREV_HV1B8
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE)
35-69


PREV_HV1BN
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE)
25-59


PREV_HV1BR
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE)
22-59


PREV_HV1EL
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)
35-69


PREV_HV1H2
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
32-66


PREV_HV1J3
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE)
35-69


PREV_HV1JR
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
29-63


PREV_HV1MA
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)
31-66


PREV_HV1MN
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)
31-66


PREV_HV1OY
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (MN ISOLATE)
31-66


PREV_HV1PV
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE)
32-69


PREV_HV1S3
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE)
35-69




AN


PREV_HV1SC
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF33 ISOLATE)
35-69


PREV_SIVAI
REV PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SC ISOLATE)
32-69


PREV_SIVAG
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
26-77


PREV_SIVAI
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
26-77


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
29-77


PREV_SIVCZ
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
28-75


PREV_VILV
REV PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
33-67


PRIR1_ASFM2
REV PROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
21-62


PRIR1_EBV
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWILIL 20/1)
7-41
88-133
635-683



LAR


PRIR1_HCMVA
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
231-247
689-723



LAR


PRIR1_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
632-668



LAR


PRIR1_HSVSA
RIBONUCLEOSIDE-DIPHOSPI4ATE REDUCTASE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
76-110



LAR


PRIR1_VACCC
R1DONUCLEOSIDE-DIPHOSPHATE REDUCTASE
HERPES VIRUS SAIMIRI (STRAIN 11)
324-365



LAR


PRIR1_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
367-402



LAR


PRIR1_VARV
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VACCINIA VIRUS (STRAIN WR)
367-402



LAR


PRIR1_VZVD
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VARIOLA VIRUS
367-402



LAR


PRIR2_EBV
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
223-257



LAR


PRIR2_HSVBJ
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
89-137



SMA


PRIR2_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
BOVINE HERPES VIRUS TYPE 1 (STRAIN 34)
101-135



SMA


PRIR2_HSVSA
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
106-140



SMA


PRIR2_SFVKA
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
HERPES VIRUS SAIMIRI (STRAIN 11)
125-159



SMA


PRIR2_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
98-132



SMA


PRIR2_VACCP
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
98-132



SMA


PRIR2_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VACCINIA VIRUS (STRAIN L-IVP)
98-132



SMA


PRIR2_VARV
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VACCINIA VIRUS (STRAIN WR)
98-132



SMA


PRL1_HSV2H
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
VARIOLA VIRUS
98-132



SMA


PRP94_VACCV
NEUROVIRULENCE FACTOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
171-212


PRP94_VARV
RNA-POLYMERASE-ASSOCIATED
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN
116-150
465-540
757-791



TRANSCRIPTION S


PRPO1_VACCC
RNA-POLYMERASE-ASSOCIATED
VARIOLA VIRUS
41-75
116-150
465-540
757-791



TRANSCRIPTION S


PRPO1_VACCV
DNA-DIRECTED RNA POLYMERASE 147 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
243-291
622-656
754-791
954-988
1006-



POLYPE





1057


PRPO1_VARV
DNA-DIRECTED RNA POLYMERASE 147 KD
VACCINIA VIRUS (STRAIN WR)
243-291
622-656
754-791
965-988
1024-



POLYPE





1058


PRPO2_CAPVK
DNA-DIRECTED RNA POLYMERASE 147 KD 
VARIOLA VIRUS
243-291
622-656
754-791
954-988
1006-



POLYPE





1057


PRPO2_COWPX
DNA-DIRECTED RNA POLYMERASE 132 KD
CAPRIPOXVIRUS (STRAIN KS-1)
19-60
114-155
589-630



POLYPE


PRPO2_VACCV
DNA-DIRECTED RNA POLYMERASE 132 KD
COWPOX VIRUS
211-245
359-400
833-874



POLYPE


PRPO2_VARV
DNA-DIRECTED RNA POLYMERASE 132 KD
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN)
211-245
359-400
833-874



POLYPE


PRPO4_VACCC
DNA-DIRECTED RNA POLYMERASE 132 KD
VARIOLA VIRUS
211-245
359-400
833-874



POLYPE


PRPO4_VACCV
DNA-DIRECTED RNA POLYMERASE 35 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
62-116



POLYPEP


PRPO4_VARV
DNA-DIRECTED RNA POLYMERASE 35 KD
VACCINIA VIRUS (STRAIN WR)
62-116



POLYPEP


PRPO5_VACCC
DNA-DIRECTED RNA POLYMERASE 35 KD
VARIOLA VIRUS
62-116



POLYPEP


PRPO5_VACCV
DNA-DIRECTED RNA POLYMERASE 30 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-71



POLYPEP


PRPO5_VARV
DNA-DIRECTED RNA POLYMERASE 30 KD
VACCINIA VIRUS (STRAIN WR)
1-71



POLYPEP


PRPO6_VACCV
DNA-DIRECTED RNA POLYMERASE 30 KD
VARIOLA VIRUS
1-71



POLYPEP


PRPO6_VARV
DNA-DIRECTED RNA POLYMERASE 22 KD
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN)
25-59



POLYPEP


PRPO7_VACCV
DNA-DIRECTED RNA POLYMERASE 22 KD
VARIOLA VIRUS
25-59



POLYPEP


PRPO7_VARV
DNA-DIRECTED RNA POLYMERASE 19 KD
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN)
43-93



POLYPEP


PRPOA_LELV
DNA-DIRECTED RNA POLYMERASE 19 KD
VARIOLA VIRUS
43-93



POLYPEP


PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS
1533-
1721-
1958-
2019-





1567
1758
1992
2157


PRRP1_IAANN
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS
1083-
1477-
1633-





1117
1518
1673


PRRP1_IABEI
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
171-242
279-313



P1


PRRP1_IADUN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/BEIJING/11/56)
171-242
279-313
350-391



P1


PRRP1_IAGU2
RNA-DIRECTED RNA POLYMERASIS SUBUNIT
INFLUENZA A VIRUS (STRAIN A/DUNEDIN/4/73)
171-242
279-313



P1


PRRP1_IAHLO
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
171-242
279-313



P1


PRRP1_IAHTE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
168-242
279-313



P1


PRRP1_IAKIE
RNA-DIRECTED BRA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
168-242
279-313



P1


PRRP1_IAKOR
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
171-242
279-313



P1


PRRP1_IALE1
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
171-242
279-313



P1


PRRP1_IALE2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
171-242
279-313



P1


PRRP1_IALE3
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
171-242
279-313



P1


PRRP1_IAMAN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57)
171-242
279-313



P1


PRAP1_IAME8
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
171-242
279-313



P1


PRRP1_IANT6
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/8/88)
171-242
279-313



P1


PRRP1_IAPUE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/NT/60/61)
171-242
279-313



P1


PRRP1_IASIN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
168-242
279-313



P1


PRRP1_IATKM
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
171-242
279-313



P1


PRRP1_IAV17
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80
171-242
279-313



P1


PRRP1_IAWIL
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
171-242
279-313



P1


PRRP1_IAWIS
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN WILSON-SMITH/33)
168-242
279-313



P1


PRRP1_IAZH3
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88)
168-242
279-313



P1


PRRP1_IAZON
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
187-242
279-313



P1


PRRP1_IAZTF
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81)
171-242
279-313



P1


PRRP1_INBAC
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77)
171-242
279-313



P1


PRRP1_INBAD
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN B/ANN ARBOR/1/66)
208-249



P1


PRRP1_INBLE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE]
208-249



P1


PRRP1_INCJJ
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN B/LEE/40)
208-249



P1


PRRP2_IAANN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN C/JJ/50)
350-384
648-686
707-752



P1


PRRP2_IADH2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
110-144
177-218



P2


PRRP2_IAFPR
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
110-144
177-218



P2


PRRP2_IAGU2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
110-144
177-218



P2
VIRUS/ROSTOCK


PRRP2_IAHLO
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
110-144
177-218



P2


PRRP2_IAHTE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
110-144
177-218



P2


PRRP2_IAKOR
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
110-144
177-218



P2


PRRP2_IALE1
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
110-144
177-218



P2


PRRP2_IALE2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
110-144
177-218



P2


PRRP2_IAMAN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/27/57)
110-144
177-218



P2


PRRP2_IANT6
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
110-144
177-218



P2


PRRP2_IAP10
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
110-144
177-218



P2


PRRP2_IAPUE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79)
110-144
177-218



P2


PRRP2_IARUD
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
110-144
177-218



P2


PRRP2_IASIN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW JERS
110-144
177-218



P2


PRRP2_IATKM
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
110-144
177-218



P2


PPRP2_IAV17
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80)
110-144
177-218



P2


PRRP2_IAWIL
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
110-144
177-218



P2


PRRP2_IAZH2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
110-144
177-218



P2


PRRP2_IAZH3
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78
110-144
177-218



P2


PRRP2_IAZ11
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
110-144
177-218



P2


PRRP2_IAZTF
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30
110-144
177-218



P2


PRRP2_INBAC
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77)
110-144
177-218



P2


PRRP2_INBAD
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
111-196
349-390



P2
ADAPTE


PRRP2_INBSI
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])
111-196
349-390



P2


PRRP3_IAANN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
111-196
349-383



P2


PRRP3_IABUD
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
1-42
363-402
473-514
707-755



P3


PPRP3_IACHI
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)
1-42
363-420
473-514
518-567
707-755



P3


PRRP3_IAFPR
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
1-42
363-402
473-514
707-755



P3


PRRP3_IAFPW
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
1-42
363-402
473-514
707-755



P3
VIRUS/ROSTOCK


PRRP3_JAGU2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
1-42
363-402
473-514
707-755



P3
VIRUS/WEYBRID


PRRP3_IAGUA
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77
1-42
363-402
473-514
707-755



P3


PRRP3_IAHK6
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84)
7-41
363-402
473-514
707-755



P3


PRRP3_IAHLO
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/860)
1-42
363-402
473-514
707-755



P3


PRRP3_IAHPR
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
1-42
363-402
473-514
707-755



P3


PRRP3_IAKIE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
1-42
363-402
473-514
721-755



P3


PRRP3_IAKOR
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
1-42
363-402
473-514
707-755



P3


PRRP3_IALE1
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
1-42
363-402
473-514
707-755



P3


PRRP3_IALE2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
1-42
363-402
473-514
707-755



P3


PRRP3_IALE3
RNA-DIRECTED RNA POLYMERASE SUBUNIT P3
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
1-42
363-402
473-514
707-555



P3


PRRP3_IAMAN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57)
1-42
363-402
473-514
707-755



P3


PRRP3_IAME8
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
363-402
473-514
707-755



P3


PRRP3_IANT6
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/8/88)
7-41
363-402
473-514
707-755



P3


PRRP3_IAPUE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
1-42
363-402
473-514
707-755



P3


PRRP3_IARUD
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
1-42
363-402
473-514
707-755



P3


PRRP3_IASE2
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
1-42
363-402
473-514
707-755



P3
JERSE


PRRP3_IASIN
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/133/82)
1-42
363-402
473-514
707-755



P3


PRRP3_IATKM
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
1-42
363-402
473-514
707-755



P3


PRRP3_IAV17
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80)
1-42
363-402
473-514
707-755



P3


PRRP3_IAWIL
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
1-42
363-402
473-514
707-755



P3


PRRP3_IAZI1
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33
1-42
363-402
473-514
707-755



P3


PRRP3_IAZTE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
1-42
363-402
473-514
707-755



P3


PRRP3_INBAC
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77
7-41
363-402
473-514
707-755



P3


PRRP3_INBAD
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
458-533



P3
ADAPTE


PRRP3_INCBE
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA B VIRUS (STRAIN B/ANN ARROR/1/66 [WILD-TYPE])
458-533



P3


PRRP3_INCJJ
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
235-269
275-309



P3


PRRP3_THOGV
RNA-DIRECTED RNA POLYMERASE SUBUNIT
INFLUENZA C VIRUS (STRAIN C/JJ/50)
235-269
275-316



P3


PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE SUBUNIT
THOGOTO VIRUS
343-401



P3


PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
358-392
495-571
1742-
1971-
3664-
3912-







1776
2008
3724
3946


PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
617-651
1364-
2769-
3586-
3821-
4075-
4319-






1398
2803
3620
3855
4121
4353


PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS
20-64
617-651
943-







1009


PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
1129-
1303-
1453-
1692-
2629-





1170
1337
1494
1726
2670


PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
1129-
1303-
1453-
1690-
2627-





1170
1337
1494
1724
2668


PRRPB_IBVK
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE)
499-550
650-695
1460-
1509-
2246-







1494
1548
2287


PRRPL_BTV10
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
115-156


PRRPL_BUNYW
RI4A-DIRECTED RNA POLYMERASE
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
308-342
705-748
825-903
1021-
1114-








1076
1201


PRRPL_CDVO
RNA POLYMERASE
BUNYAMWERA VIRUS
2-36
80-114
308-363
371-412
1704-
1802-
1889-









1741
1861
1935


PRRPL_HANTV
RNA POLYMERASE BETA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
20-54


PRRPL_HRSVA
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118
98-139
174-208
372-431
557-591
655-696
731-783
905-949
1276-











1310





1419-
1742-
1993-





1453
1776
2027


PRRPL_MABVM
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2
87-118
827-861
1131-
1185-
1465-







1179
1220
1517


PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
597-631
1046-
1490-
1804-
2029-
2194-






1092
1552
1838
2063
2266


PRRPL_MEASE
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
597-631
1046-
1490-






1092
1552


PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
197-231
790-824
869-903
1064-
1283-
2121-








1109
1317
2155


PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
164-214
220-254
267-304
576-627
752-807
1231-
1447-
1487-










1286
1481
1531





1566-
2191-





1600
2225


PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
167-208
230-295
1969-
2043-
2108-







2013
2077
2142


PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
136-170
575-628
750-785
1226-
1316-
1417-
1564-
1687-








1284
1357
1479
1630
1721





1901-





1955


PRRPL_PUUMH
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
48-91
107-163
540-574
747-781
1064-
1293-
1499-
1994-









1129
1356
1536
2036


PRRPL_RABVP
RNA-DIRECTED RNA POLYMERASE
PUUMALA VIRUS (STRAIN HALLNAS B1)
98-132
384-415
444-488
557-591
655-696
731-783
922-976
1119-












1153





1742-
1940-
1993-





1776
1975
2032


PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
73-114
197-231
696-730
1174-
1522-
1584-
2068-








1222
1580
1618
2123


PRRPL_RDV
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
73-114
197-231
696-730
749-783
1174-
1522-
1584-









1222
1580
2123


PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS
17-61
534-575
844-878
918-985
1037-









1071


PRRPL_SEND5
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
398-439
641-678
832-887
1081-
1653-
1819-








1115
1687
1870


PRRPL_SENDE
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
309-343
540-600
612-656
747-781
1064-
1239-
1499-
2000-









1119
1280
1536
2034





2146-





2216


PRRPL_SENDZ
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
129-163
360-420
432-476
567-601
884-939
1059-
1319-
1820-










1100
1356
1854





1966-





2036


PRRPL_SEOU8
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
309-343
540-600
612-656
747-781
1064-
1239-
1499-
2000-









1119
1280
1536
2034





2146-





2216


PRRPL_SVSWR
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
98-139
174-208
557-591
655-696
731-765
1742-
1947-
1993-










1776
1981
2027


PRRPL_SYNV
RNA POLYMERASE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR)
547-627
747-781
1225-
1319-
1592-
1676-
2024-







1280
1353
1626
1715
2058


PRRL_TSWVB
RNA POLYMERASE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS
760-794
825-859
977-
1089-
1978-
2059-







1014
1137
2032
2107


PRRPL_UUK
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNHI/BR
46-101
399-423
539-573
589-634
1119-
1195-
1321-
1538-









1153
1236
1379
1572





1684-
1857-
2073-
2156-
2206-
2315-
2378-
2809-





1725
1898
2127
2200
2247
2368
2419
2843


PRRPL_VSVJH
RNA POLYMERASE
UUKUNIEMI VIRUS
127-183
282-323
836-874
1030-
1481-
2015-
2061-








1071
1515
2049
2098


PRRPL_VSVJO
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA
319-358
674-715
720-763
1522-
1802-








1567
1836


PRRPL_VSVSJ
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA
319-358
674-715
720-763
1802-








1836


PRRPO_ACLSV
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN SAN JAN)
674-715
720-763
1019-
1742-
2066-







1074
1799
2107


PRRPO_BWYVF
RNA-DIRECTED RNA POLYMERASE
APPLE CHLOROTIC LEAF SPOT VIRUS
228-262
557-596
916-950
1235-








1269


PRRPO_BYDVI
PUTATIVE RNA-DIRECTED RNA POLYMERASE
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
304-341


PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA POLYMERASE
BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PSI)
234-285


PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA POLYMERASE
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
234-285


PRRPO_CARMV
PUTATIVE RNA-DIRECTED RNA POLYMERASE
BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV)
234-285


PRRPO_CGMVS
PROBABLE RNA-DIRECTED RNA POLYMERASE
CARNATION MOTTLE VIRUS
93-131


PRRPO_IBDVS
PUTATIVE RNA-DIRECTED RNA POLYMERASE
CUCUMBER GREEN MOTTLE MOSAIC VIRUS (WATERMELON
7-41
387-428
446-480
726-767
1445-




STR




1479


PRRPO_IBDVA
PUTATIVE RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70)
384-432
446-484


PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN
144-185
266-307
709-757
771-809




AUSTRALI


PRRPO_IPNVS
PUTATIVE RNA-DIRECTED RNA POLYMERASE
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE
147-181
268-407
501-535
750-802




JASPER)


PRRPO_LYCVA
PUTATIVE RNA-DIRECTED RNA POLYMERASE
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE SP)
147-181
366-407
501-535
753-802


PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN
301-346
805-886
926-990
1509-
2090-




ARMSTRON



1543
2124


PRRPO_MCMV
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE)
301-345


PRRPO_PEAMV
PROBABLE RNA-DIRECTED RNA POLYMERASE
MAIZE CHLOROTIC MOTTLE VIRUS
181-215
697-731


PRRPO_PLRVI
RNA-DIRECTED RNA POLYMERASE
PEA ENATION MOSAIC VIRUS
321-358


PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA POLYMERASE
POTATO LEAFROLL VIRUS (STRAIN 1)
336-373
423-457


PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA POLYMERASE
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
336-373
423-457


PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA POLYMERASE
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN
321-362
402-454
627-661
862-896


PRRPO_REOVD
PUTATIVE RNA-DIRECTED RNA POLYMERASE
RED CLOVER NECROTIC MOSAIC VIRUS
666-700


PRRPO_REOVJ
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 3/STRAIN DEARING)
310-361


PRRPO_REOVL
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 2/STRAIN D5/JONES)
310-344


PRRPO_ROTBR
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 1/STRAIN LANG)
310-361


PRRPO_ROTBU
RNA-DIRECTED RNA POLYMERASE SUBUNIT
BOVINE ROTAVIRUS (STRAIN RF)
60-96
133-167
204-245
535-569
579-631
639-686
690-724
771-805



VP1


PRRPO_ROTPC
RNA-DIRECTED RNA POLYMERASE SUBUNIT
BOVINE ROTAVIRUS (STRAIN UK)
60-96
133-167
204-245
535-569
579-631
639-686
690-724
771-805



VP1


PRRPO_ROTPG
RNA-DIRECTED RNA POLYMERASE SUBUNIT
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
3-44
255-299
335-397
476-510
518-620
966-



VP1






1007


PRRPO_ROTSI
RNA-DIRECTED RNA POLYMERASE SUBUNIT
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
62-96
133-167
336-377
581-631
636-686
690-724
771-842



VP1


PRRPO_SBMV
RNA-DIRECTED RNA POLYMERASE SUBUNIT
SIMIAN II ROTAVIRUS (STRAIN SA11)
60-96
133-167
535-569
579-631
639-686
690-724
771-805



VP1


PRRPO_SCVLA
PROBABLE RNA-DIRECTED RNA POLYMERASE
SOUTHERN BEAN MOSAIC VIRUS
628-665


PRRPO_TACV
RNA-DIRECTED RNA POLYMERASE
SACCHAROMYCES CEREVISIAE VIRUS L-A
100-134
147-191


PRRPO_TMGMV
RNA POLYMERASE
TACARIBE VIRUS
155-204
220-278
375-416
484-518
891-925
1030-
1285-
1981-










1081
1319
2015


PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA POLYMERASE
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
401-449
682-720
765-818


PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA POLYMERASE
TOBACCO MOSAIC VIRUS (VULGARE)
3-37
401-453
665-699


PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA POLYMERASE
TOBACCO MOSAIC VIRUS (STRAIN KOREAN)
3-37
401-453
665-699


PRRPO_TNVD
PUTATIVE RNA-DIRECTED RNA POLYMERASE
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
3-37
401-453
860-894


PRRPP_BRSVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN D)
102-144


PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
99-158
160-216


PRRPP_HRSV
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
312-373


PRRPP_HRSV1
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-158
160-216


PRRPP_HRSVA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI
99-158
160-216


PRRPP_HRSVL
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
99-158
160-216


PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAI
99-158
160-216


PRRPP_MEAS1
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
315-374
460-495


PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
3155-374
460-495


PRRPP_MUMP1
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
315-374
460-495


PRPPP_MUMPE
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
149-183
213-275


PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
214-276


PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
214-276


PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
100-134




VICTORIA/32)


PRRPP_PI1HB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
100-138


PRRPP_PI1HC
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35)
80-114
313-364
375-437


PRRPP_PI1HD
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
80-114
313-364
375-437


PRRPP_PI1HE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-5/73)
80-114
313-364
375-437


PRRPP_PI2H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/830)
66-114
237-271
313-364
375-437


PRRPP_PI2HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
218-281


PRRPP_PI3B
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
218-281


PRRPP_P13H4
RNA POLYMERASE ALPHA SUBUNIT
BOVINE PARAINFLUENZA 3 VIRUS
31-130
414-470


PRRPP_PI4HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
410-499


PRRPP_PI4HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
4-38
222-285


PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333)
222-285


PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
137-174


PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
93-127


PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
93-127


PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND (STRAIN PM)
93-127


PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
93-127


PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19
93-127


PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
313-364
375-447


PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN 6/94)
323-364
375-447


PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN FUSHIMI)
313-364
375-447


PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN HARRIS)
313-364
375-447


PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z)
313-364
375-447


PRRPP_SYNV
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3)
205-278


PRRPP_VSVIG
RNA POLYMERASE ALPHA SUBUNIT
SONCHUS YELLOW NET VIRUS
138-173
233-281


PRRPP_VSVIM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN G
3-43


PRRPP_VSVIM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN M
3-43


PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA
3-37


PRRPP_VSVSJ
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRA
3-37


PSPHR_AMEPV
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
3-43


PSPI2_VACCV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
223-264
361-395


PSPI2_VARV
SERINE PROTEINASE INHIBITOR
VACCINIA VIRUS (STRAIN WR)
21-86


PSPI3_VACCC
SERINE PROTEINASE INHIBITOR 2
VARIOLA VIRUS
21-86


PSPI3_VACCV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN COPENHAGEN)
118-167
225-266


PSPI3_VARV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN WR)
118-167
225-266


PSPIA_VACCC
SERINE PROTEINASE INHIBITOR 3
VARIOLA VIRUS
122-171
229-270


PT2C2_CHVP1
SERINE PROTEINASE INHIBITOR 2 HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-65



FIRST


PTAA2_VACCV
TYPE II RESTRICTION ENZYME CVTAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
48-85


PTAG8_FOWPV
TRANS-ACTIVATOR PROTEIN A2
VACCINIA VIRUS (STRAIN WR, COPENHAGEN, AND VARIOLA
95-133
173-207




VI


PTAG8_VACCV
TRANS-ACTIVATOR PROTEIN FP0
FOWLPOX VIRUS
3-51


PTAG8_VARV
TRANS-ACTIVATOR PROTEIN GK1
VACCINIA VIRUS (STRAIN WR), (STRAIN COPENHAGEN)
3-51


PTALA_BFDV
TRANS-ACTIVATOR PROTEIN GK1
VARIOLA VIRUS
3-51


PTALA_POVBO
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
291-325
464-498


PTALA_POVHA
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
303-337
495-537


PTALA_POVJC
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
464-501
587-621


PTALA_POVLY
LARGE T ANTIGEN
POLYOMAVIRUS JC
153-187
589-623


PTALA_POVM3
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
3-41
206-258
437-478


PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
509-544


PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
507-542


PTAMI_POVHA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL-
504-539




PLAQUE)


PTAMI_POVM3
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
339-378


PTAMI_POVMA
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
211-245
388-422


PTAMI_POVMC
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
192-226
369-403


PTASM_POVBO
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL-
192-226
369-403




PLAQUE)


PTASM_POVLY
SMALL T ANTIGEN
BOVINE POLYOMAVIRUS
41-85


PTATR_NPVAC
SMALL T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
3-41


PTATR_NPVBM
TRANS-ACTIVATING TRANSCRIPTIONAL
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
408-442
46-480
489-523



REGULAT


PTATR_NPVOP
TRANS-ACTIVATING TRANSCRIPTIONAL
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
413-447
451-485
494-528



REGULAT


PTAT_SIVAI
TRANS-ACTIVATING TRANSCRIPTIONAL
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
391-455
511-554



REGULAT
VIRUS


PTAT_SIVAI
TAT PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
73-109


PTAT_VILV
TAT PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
137-185


PTAT_VILV1
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS (STRAIN 1514)
28-74



REGULAT


PTAT_VILV2
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1)
40-74



REGULAT


PTCB_FLV
TRANS-ACTIVATING TRANSCRIPTIONAL
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)
40-74



REGULAT


PTEGP_HSVI1
T-CELL RECEPTOR BETA CHAIN PRECURSOR
FELINE LEUKEMIA VIRUS
279-321


PTEGP_SVEA
TEGUMENT PHOSPHOPROTEIN US9
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
27-61


PTEGP_HSVEB
NONSENSE


PTEGP_HSVEK
NONSENSE


PTEGP_HSVSB
NONSENSE


PTEGU_EBV
NONSENSE


PTEGU_HCMVA
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
768-802
821-855
938-972
1101-
1208-
1479-
1700-
1809-








1138
1242
1516
1753
1867





1870-
1920-
3108-





1916
1954
3149


PTEGU_HSV11
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-71
215-249
543-581
700-738
868-909
936-977
1004-
1163-











1038
1200





1237-
2200-





1296
2235


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
731-765
801-842
1022-
1223-
1275-
1315-
1520-
1609-







1059
1269
1309
1370
1531
1669





1673-
1749-
1820-
2670-





1714
1783
1854
2704


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
30-71
224-262
567-608
712-757
951-
1091-
1192-
1357-









1000
1181
1233
1400


PTEGU_HSVSA
LARGE TEGUMENT PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
560-597
635-683
794-848
908-956
1108-
1155-
1399-
1487-









1151
1246
1458
1549





1619-
1661-
1702-
1806-
1947-





1657
1695
1736
1843
1981


PTEGU_VZVD
PROBABLE LARGE TEGUMENT PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
520-558
560-598
615-652
672-710
777-822
846-898
948-986
1287-












1332





1434-





1502


PTERM_ADE02
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
657-696
713-747
804-841
933-972
1117-
1415-
1528-
1572-









1158
1471
1562
1620





1633-
1719-
1945-
2727-





1705
1756
1986
2761


PTERM_ADE05
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 2
490-572


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 5
490-592


PTERM_ADE12
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
491-559


PTJUN_AVIS1
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 12
443-491
497-538


PTMAF_AVIS4
TRANSFORMING PROTEIN JUN
AVIAN SARCOMA VIRUS (STRAIN 17)
210-284


PTOP1_SFVKA
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC FIBROSARCOMA VIRUS AS42
247-288
295-340


PTOP2_ASFB7
DNA TOPOISOMERASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
127-183
269-310


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
146-180
481-515
601-642
945-979
1038-
1123-









1093
1162


PTSIS_SMSAV
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWILIL 20/1)
146-180
480-514
600-641
902-936
944-978
1038-
1122-










1091
1161


PTYSY_VZVD
PDGF-RELATED TRANSFORMING PROTEIN P28-
SIMIAN SARCOMA VIRUS
16-71



SIS


PUBIL_NPVOP
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
235-260


PUL01_HCMVA
UBIQUITIN-LIKE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
43-80




VIRUS


PUL03_HSV11
HYPOTHETICAL PROTEIN UL1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
169-203


PUL03_HSV2H
PROTEIN UL3
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
94-128


PUL03_HSVEB
PROTEIN UL3
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
92-126


PUL04_HSV11
GENE 60 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
70-104


PUL06_EBV
PROTEIN UL4
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
102-136


PUL06_HCMVA
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-145
313-347
376-410


PUL06_HSV11
HYPOTHETICAL PROTEIN UL6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
216-250


PUL06_HSVEB
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
36-94
103-141
294-329
337-371
416-479


PUL06_HSVSA
VIRION GENES 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
62-170
357-413
448-503


PUL06_ZVD
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
90-140
151-194
302-336
364-405


PUL08_HCMVA
VIRION GENE 54 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
87-131
350-409
704-738


PUL09_HSVEB
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-50


PUL09_ZVD
ORIGIN OF REPLICATION BINDING PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
174-208


PUL11_CMVA
ORIGIN OF REPLICATION BINDING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
122-363


PUL13_HCMVA
NONSENSE


PUL14_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-81
185-227


PUL14_HSVEB
HYPOTHETICAL PROTEIN UL14
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
305-343


PUL14_PRVN3
HYPOTHETICAL GENE 48 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
52-96
246-283


PUL14_VZVD
UL14 PROTEIN HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3)
43-95


PUL16_HSVEB
HYPOTHETICAL GENE 46 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
61-103


PUL17_HSV6U
GENE 46 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
266-300


PUL21_HSVEB
PROTEIN 10R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102
239-280


PUL23_HCMVA
GENE 40 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
44-78
421-474


PUL24_HCMVA
HYPOTHETICAL PROTEIN UL23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
213-253


PUL24_ILTVT
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
5-39


PUL25_HCMVA
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE
161-195




V88


PUL25_HSV11
HYPOTHETICAL PROTEIN UL25
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
255-341
351-399


PUL25_HSVEB
VIRION PROTEIN UL25
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
370-411


PUL25_HSVSA
VIRION PROTEIN UL25
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
364-413


PUL25_ILTVT
VIRION GENE 19 PROTEIN
HERPES VIRUS SAIMIPI (STRAIN 11)
29-92
183-231
365-406


PUL25_VZVD
64.1 KD VIRION PROTEIN
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE
38-84
165-206




V88


PUL31_HCMVA
VIRION GENE 34 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
340-388


PUL31_HSVEB
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
244-285


PUL31_VZVD
GENE 29 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
153-187


PUL32_HSVEB
GENE 27 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
163-197


PUL32_VZVD
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(STRAIN AB1)
342-376


PUL33_HCMVA
PROBASLE MAJOR ENVELOPE GLYCOPROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
72-106
296-344



26


PUL33_VZVD
G-PROTEIN COUPLED RECEPTOR HOMOLOG
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
94-135
309-352



UL33


PUL34_EBV
GENE 25 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
29-63


PUL34_HCMVA
BFRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
159-200


PUL34_HSV11
HYPOTHETICAL PROTEIN UL34
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
113-147


PUL35_HCMVA
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
187-221


PUL37_EBV
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
231-268


PUL37_HSV11
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
708-742


PUL37_HSVEB
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
853-891


PUL37_HSVSA
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
82-137
311-345
614-648
715-750
781-822


PUL37_VZVD
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
6-65
682-741


PUL38_HCMVA
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
719-753
786-827


PUL41_VZVD
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
10-51


PUL42_HSV11
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-366


PUL42_HSVEB
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
134-168
221-263


PUL43_HCMVA
DNA-BINDING GENE 18 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
138-172


PUL43_HSVE4
HYPOTHETICAL PROTEIN UL43
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
72-109


PUL43_VZVD
MEMBRANE PROTEIN UL43 HOMOLOG
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
27-68


PUL45_HSV1K
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
312-363


PUL45_HSV1M
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
96-137


PUL47_HCMVA
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN MP)
96-137


PUL47_HSV11
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-165
448-415
745-856


PUL47_HSV1F
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
473-518


PUL47_HSVBP
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F
473-518


PUL47_HSVE4
80.7 KD ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
561-612


PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
183-246
582-620
825-866


PUL47_VZVD
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
219-253
371-412
817-866


PUL50_HCMVA
ALPHA TRANS-INDUCING FACTOR 91.8 KD
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
84-135
156-209
664-701



PROTEIN


PUL51_HSV11
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
155-189


PUL51_HSVE4
PROTEIN UL51
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
118-169


PUL51_HSVEB
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
121-162


PUL51_VZVD
GENE 8 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
120-161


PUL52_EBV
GENE 7 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
122-163


PUL52_HSV11
PROBABLE DNA REPLICATION PROTEIN BSLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
188-255


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
189-223


PUL52_HSVSA
DNA REPLICATION PROTEIN UL52
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
141-182
929-970


PUL52_VZVD
PROBABLE DNA REPLICATION GENE 56
HERPES VIRUS SAIMIRI (STRAIN 11)
445-483



PROTEIN


PUL53_HCMVA
PROBABLE DNA REPLICATION GENE 6
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
301-342



PROTEIN


PUL55_HSV2H
PROTEIN UL53
CYTOMEGALOVIRUS (STRAIN AD169)
12-48


PUL64_HCMVA
PROTEIN UL55
HERPES SIMPLEX VIRUS (TYPE 21 STRAIN HG52)
151-185


PUL70_HCMVA
HYPOTHETICAL PROTEIN UL64
CYTOMEGALOVIRUS (STRAIN AD169)
32-73


PUL74_HCMVA
PROBABLE DNA REPLICATION PROTEIN UL70
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
39-99


PUL87_HSV6U
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-79


PUL87_HSVSA
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYLPE 6/STRAIN UGANDA-1102)
729-770


PUL88_HCMVA
HYPOTHETICAL GENE 24 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
366-400
582-616


PUL91_HSVSA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
357-391


PUL92_EBV
HYPOTHETICAL GENE 30 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
24-58


PUL92_HCMVA
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
188-222


PUL92_HSV6U
HYPOTHETICAL PROTEIN UL92
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
79-116


PUL92_HSVSA
HYPOTHETICAL PROTEIN 9R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
101-145
174-216


PUL93_HCMVA
HYPOTHETICAL GENE 31 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
88-122


PUL95_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
23-57
299-384


PUL95_HSV6U
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-71
259-293


PUL96_HCMVA
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
73-151
233-270


PUL96_HSV6U
HYPOTHETICAL PROTEIN UL96
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
51-103


PUL96_HSVSA
HYPOTHETICAL PROTEIN 14R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
53-113


PULA2_HCMVA
HYPOTHETICAL GENE 35 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
45-100


PULA4_HCMVA
HYPOTHETICAL PROTEIN UL102
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-40
758-792


PULD0_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
1-56
130-171
330-364
439-492
541-575


PUNG_HSV11
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
84-125


PUNG_HSV23
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
227-268


PUNG_HSV2H
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
188-229


PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 11G52
148-189


PUNG_SFVKA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176


PUS02_HSVEB
URACIL-DNA GLYCOSYLASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
81-115


PUS02_HSVEK
GENE 68 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
79-120


PUS07_HCMVA
US1 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN KENTUCKY A)
86-120


PUS11_HCMVA
HYPOTHETICAL PROTEIN HXLFS

2-36


PUS14_HCMVA
HYPOTHETICAL PROTEIN HXLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)


PUS18_HCMVA
HYPOTHETICAL PROTEIN HVLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
3-51


PUS23_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
187-225


PUS24_HCMVA
HYPOTHETICAL PROTEIN HHLF7
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-335
535-578


PUS26_HCMVA
HYPOTHETICAL PROTEIN HHLF6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
135-172


PUS27_HCMVA
HYPOTHETICAL PROTEIN HHLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-584


PUS30_HCMVA
G-PROTEIN COUPLED RECEPTOR HOMOLOG
HUMAN CYTOMEGALO VIRUS (STRAIN AD169)
6-40



US27


PV125_AMVLE
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
135-169
274-312


PV143_NPVAC
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN
11-52
326-367
591-649


PV16K_TRVPS
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
313-350
1114-
1179-






1150
1213


PV16K_TRVSY
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
75-117


PV1A_BBMV
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM)
75-117


PV1A_BMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
21-55
349-405
492-526
710-751
837-884
890-924


PV1A_CCMV
1A PROTEIN
BROME MOSAIC VIRUS
4-66
348-411


PV1A_CMVFN
1A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
4-53
242-276
348-389
487-526


PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
11-66
393-434
584-619
868-916


PV1A_CMVQ
1A PROTEIN
CUUMBER MOSAIC VIRUS (STRAIN O)
11-66
393-434
584-619
868-916


PV1A_PSVJ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
11-66
393-434


PV1A_TAV
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
4-66


PV23K_HSVTH
1A PROTEIN
TOMATO ASPERMY VIRUS
11-59
392-433
837-923


PV24K_BDV
23.5 KD PROTEIN
TURKEY HERPESVIRUS (STRAIN H2)
177-211


PV25K_NPVAC
24 KD ANTIGEN
BORNA DISEASE VIRUS
63-121
130-171


PV28K_PLRV1
25 KD PROTEIN
AUTPGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
4-50


PV28K_PLRVW
28 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
116-150


PV290_ASFL5
28 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
116-150


PV29K_PEBV
LIS 290 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
138-183


PV29K_TRVSY
29.6 KD PROTEIN
EARLY BROWNING VIRUS
115-192


PV29K_TRVTC
291 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM), AND (STRAIN PSG)
167-201


PV2A_CCMV
29 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
45-79


PV2A_CMVFN
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
768-806


PV2A_PSVJ
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
386-420


PV2A_TAV
2A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
717-751


PV30K_TRVTC
2A PROTEIN
TOMATO ASPERMY VIRUS
722-756


PV360_ASFB7
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
105-218


PV362_ASFB7
K′360 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
53-87
151-192


PV363_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
54-102
161-212
290-324


PV3A_BMV
D′363 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
153-199


PV3A_CMVFN
3A PROTEIN
BROME MOSAIC VIRUS
11-45


PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
215-255


PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
215-255


PV3A_CMVY
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
215-255


PV51K_ACLSV
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Y)
215-255


PV51K_BWYVF
50.8 KD PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS
72-106


PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
113-147
196-233
404-451


PV56K_PLRV1
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1)
113-147
196-233
407-451


PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
47-81
438-472


PV58K_BSMV
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
47-81
438-475


PV66K_BWYVF
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
128-162
323-371


PV70K_PLRV1
66.2 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
480-521


PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
98-144
514-548


PV90K_AMVLE
69.7 KD PROTEIN
POTATO LEAPROLL VIRUS (STRAIN WAGENINGEN)
98-144
409-443
514-548


PVA04_VACCC
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
107-141


PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
32-66
231-275


PVA04_VARV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
32-66
231-275


PVA06_VACCC
PROTEIN A4
VARIOLA VIRUS
22-66
210-265


PVA06_VACCV
PROTEIN A6
VACCINIA VIRUS (STRAIN COPENHAGEN)
97-213
314-355


PVA06_VARV
PROTEIN A6
VACCINIA VIRUS (STRAIN WR)
96-212
313-354


PVA08_VACCC
PROTEIN A6
VARIOLA VIRUS
97-213
313-358


PVA08_VARV
PROTEIN A8
VACCINIA VIRUS (STRAIN COPENHAGEN)
176-236


PVA09_VACCC
PROTEIN A8
VARIOLA VIRUS
176-236


PVA09_VARV
PROTEIN A9
VACCINIA VIRUS (STRAIN COPENHAGEN)
46-81


PVA11_VACCC
PROTEIN A9
VARIOLA VIRUS
46-95


PVA11_VARV
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
97-134
141-175
219-283


PVA12_VACCC
PROTEIN A11
VARIOLA VIRUS
98-176
220-284


PVA12_VARV
PROTEIN A12
VACCINIA VIRUS (STRAIN COPENHAGEN)
114-148


PVA18_VACCC
PROTEIN A12
VARIOLA VIRUS
111-152


PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN
433-467


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
307-341
433-467


PVA20_VACCC
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
307-341
433-467


PVA20_VARV
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-67


PVA22_VACCC
PROTEIN A20
VARIOLA VIRUS
1-67


PVA22_VARV
PROTEIN A22
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-69


PVA23_VACCC
PROTEIN A22
VARIOLA VIRUS
39-80


PVA23_VARV
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
95-143
173-207
255-289
344-382


PVA31_VARV
PROTEIN A23
VARIOLA VIRUS
95-143
173-207
255-289
344-382


PVA32_VACCV
PROTEIN A31
VARIOLA VIRUS
88-126


PVA32_VARV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN


PVA33_VARV
PROTEIN A32
VARIOLA VIRUS
217-251


PVA36_VACCV
PROTEIN A33
VARIOLA VIRUS
63-97


PVA36_VARV
PROTEIN A36 PRECURSOR
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN)
26-67
109-155


PVA37_VACCC
PROTEIN A36 PRECURSOR
VARIOLA VIRUS
26-67


PVA37_VACCV
PROTEIN A37
VACCINIA VIRUS (STRAIN COPENHAGEN)
24-65


PVA38_VACCC
PROTEIN A37
VACCINIA VIRUS (STRAIN WR)
24-65


PVA38_VACCV
PROTEIN A38
VACCINIA VIRUS (STRAIN COPENHAGEN)
44-91


PVA38_VARV
PROTEIN A38
VACCINIA VIRUS (STRAIN WR)
44-91


PVA39_VACCC
PROTEIN A38
VARIOLA VIRUS
44-91


PVA39_VACCV
PROTEIN A39
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-71


PVA46_VACCC
PROTEIN A39
VACCINIA VIRUS (STRAIN WR)
75-109


PVA46_VACCV
PROTEIN A46
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-126


PVA46_VARV
PROTEIN A46
VACCINIA VIRUS (STRAIN WR)
81-126


PVA47_VACCC
PROTEIN A46
VARIOLA VIRUS
81-126


PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
62-96
143-184


PVA47_VARV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
62-96
143-184


PVA49_VACCC
PROTEIN A47
VARIOLA VIRUS
62-96
143-184


PVA49_VACCV
PROTEIN A49
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-40
126-160


PVA49_VARV
PROTEIN A49
VACCINIA VIRUS (STRAIN WR)
3-40
126-160


PVA52_VACCC
PROTEIN A49
VARIOLA VIRUS
3-40
126-160


PVA52_VACCV
PROTEIN A52
VACCINIA VIRUS (STRAIN COPENHAGEN)
91-132


PVA57_VACCC
PROTEIN A52
VACCINIA VIRUS (STRAIN WR)
91-132


PVA57_VACCV
GUANYLATE KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
134-168


PVAL1_MSVK
GUANYLATE KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
134-168


PVAL1_MSVN
AL1 PROTEIN
MAIZE STREAK VIRUS (KENYAN ISOLATE)
230-269


PVAL1_MSVS
AL1 PROTEIN
MAIZE STREAK VIRUS (NIGERIAN ISOLATE)
228-262


PVAL1_SLCV
AL1 PROTEIN
MIAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE)
228-262


PVAL1_TYDVA
AL1 PROTEIN
SQUASH LEAF CURL VIRUS
117-151


PVAL3_ABMVW
AL1 PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA)
191-225


PVAL3_BGMV
AL1 PROTEIN
ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA)
44-78
83-124


PVAL3_PYMVV
AL3 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
44-78
83-124


PVAL3_SLCV
AL3 PROTEIN
POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA)
30-78
87-121


PVAL3_TGMV
AL3 PROTEIN
SQUASH LEAF CURL VIRUS
46-80
91-125


PVAT_CAMVC
AL3 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
44-78


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
22-70
84-127


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
22-70


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
22-70
93-127


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
22-70
93-127


PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
22-70
93-127


PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
22-70
93-130


PVAT_CERV
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
36-70


PVB03_VACCV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
99-138


PVB04_VACCC
PROTEIN B3
VACCINIA VIRUS (STRAIN WR)
108-142


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
89-123
321-372
496-530


PVB04_VARV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
89-123
321-372


PVB05_VACC0
PROTEIN B4
VARIOLA VIRUS
89-134
324-372
492-330


PVB05_VACCC
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LC16MO)
254-298



PRECURSOR


PVB05_VACCL
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-298



PRECURSOR


PVB05_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LISTER)
254-298



PRECURSOR


PVB07_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
254-298



PRECURSOR


PVB08_VACCC
PROTEIN B7 PRECURSOR
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN)
28-62


PVB08_VACCV
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
26-60


PVB18_VACCC
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
26-60


PVB18_VACCV
PROTEIN B18
VACCINIA VIRUS (STRAIN COPENHAGEN)
337-375
491-532


PVB18_VARV
PROTEIN B18
VACCINIA VIRUS (STRAIN WR)
337-375
491-532


PVB19_VACCC
PROTEIN B18
VARIOLA VIRUS
337-378
491-532


PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
87-121


PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN 1)
85-119


PVB20_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
85-119


PVB21_VACCV
PROTEIN B20
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-85


PVBL1_BGMV
PROTEIN B21
VACCINIA VIRUS (STRAIN WR)
61-95


PVBL1_SLCV
BL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
159-193


PVBL1_TGMV
BL1 PROTEIN
SQUASH LEAF CURL VIRUS
159-193


PVBR1_BGMV
BL1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
159-193


PVBR1_SLCV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
172-206


PVBR1_TGMV
BR1 PROTEIN
SQUASH LEAF CURL VIRUS
20-61


PVC02_VACCC
BR1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
25-59


PVC02_ACCV
PROTEIN C2
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-82
262-302
391-442


PVC04_SFVKA
PROTEIN C2
VACCINIA VIRUS (STRAIN WR)
37-82
262-302
391-442


PVC04_VACCC
PROTEIN C4
SHOPE FIBROMA VIRUS (STRAIN KASZA)
175-223
374-408


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-46


PVC04_VARV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
12-46


PVC05_SFVKA
PROTEIN C4
VARIOLA VIRUS
12-46


PVC05_VACCC
HYPOTHETICAL PROTEIN C5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
82-125


PVC05_VACCV
PROTEIN C5
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-68


PVC05_VARV
PROTEIN C5
VACCINIA VIRUS (STRAIN WR)
31-68


PVC08_SFVKA
PROTEIN C5
VARIOLA VIRUS
32-70
73-121


PVC09_SFVKA
HYPOTHETICAL PROTEIN C8
SHOPE FIBROMA VIRUS (STRAIN KASZA)
45-86


PVC09_VACCC
HYPOTHETICAL PROTEIN C9
SHOPE FIBROMA VIRUS (STRAIN KASZA)
63-106


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
82-116
168-226
289-325
575-612


PVC10_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
82-116
168-226
289-323
575-612


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
136-180


PVC10_VARV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
136-176


PVC12_SFVKA
PROTEIN C10
VARIOLA VIRUS
136-170


PVC13_SFVKA
HYPOTHETICAL PROTEIN C12
SHOPE FIBROMA VIRUS (STRAIN KASZA)
2-36


PVC16_VACCC
PROTEIN C13
SHOPE FIBROMA VIRUS (STRAIN KASZA)
3-66
137-182
189-240


PVC17_VACCC
PROTEIN C16/B22
VACCINIA VIRUS (STRAIN COPENHAGEN)
142-176


PVC18_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
100-155
325-359


PVC19_SFVKA
PROTEIN C18/B24
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-98


PVC19_VACCC
PROTEIN C19
SHOPE FIBROMA VIRUS (STRAIN KASZA)
56-97


PVCAP_EBV
PROTEIN C19/B25
VACCINIA VIRUS (STRAIN COPENHAGEN)
218-252


PVCAP_HCMVA
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-184
670-709


PVCAP_HSV11
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
136-174
191-225
260-294


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
116-175
308-356


PVCAP_HSVEB
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS
136-174
230-266
311-382


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
150-184
304-352


PVCAP_PRVIS
MAJOR CAPSID PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
479-520
673-714
755-799


PVCAP_VZVD
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S)
105-160
292-326


PVCG3_NPVAC
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
128-198
316-350


PVD05_FOWP1
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
110-248


PVD05_VACCC
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
145-181


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
123-157


PVD05_VARV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
123-157


PVD09_VACCC
PROTEIN D5
VARIOLA VIRUS
123-157


PVD09_VACCV
PROTEIN D9
VACCINIA VIRUS (STRAIN COPENHAGEN)
126-160


PVD09_VARV
PROTEIN D9
VACCINIA VIRUS (STRAIN WR)
126-160


PVD10_FOWP1
PROTEIN D9
VARIOLA VIRUS
126-160


PVD10_SFVKA
PROTEIN D10
FOWLPOX VIRUS (STRAIN FP-1)
65-99
188-222


PVD10_VARV
PROTEIN D10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
4-52


PVDBP_CAMVC
PROTEIN D10
VARIOLA VIRUS
67-105


PVDBP_CAMVD
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
1-35


PVDBP_CAMVE
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
1-35


PVDBP_CAMVN
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
1-35


PVDBP_CAMVS
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
1-35


PVE02_VACCC
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
1-35


PVE02_VACCV
PROTEIN E2
VACCINIA VIRUS (STRAIN COPENHAGEN)
282-336


PVE02_VARV
PROTEIN E2
VACCINIA VIRUS (STRAIN WR)
282-336


PVE03_VACCC
PROTEIN E2
VARIOLA VIRUS
282-336


PVE03_VACCV
PROTEIN E3
VACCINIA VIRUS (STRAIN COPENHAGEN)
17-61


PVE03_VARV
PROTEIN E3
VACCINIA VIRUS (STRAIN WR)
17-61


PVE05_VACCC
PROTEIN E3
VARIOLA VIRUS
17-61


PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-93


PVE05_VACCV
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN 1)
38-103


PVE05_VARV
PROTEIN E5
VACCINIA VIRUS (STRAIN WR)
38-103


PVE06_VACCC
PROTEIN E5
VARIOLA VIRUS
38-103


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
105-139
232-266


PVE06_VARV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
103-139
232-266


PVE18_NPVAC
PROTEIN E6
VARIOLA VIRUS
105-139
367-401


PVE1_HPV1A
EARLY 18.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
112-163


PVE1_HPV31
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
137-171


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
56-90


PVE1_HPV35
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
33-67
133-167


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
56-90


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
59-96


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
55-89
312-346


PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
25-87


PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
33-67
119-174


PVE1_PAPVE
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
265-299


PVE26_NPVAC
E1 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
176-210


PVE2_CRPVK
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
72-117


PVE2_HPV05
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN
3-44




KANS


PVE2_HPV08
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
5-57
276-310
342-383
437-471


PVE2_HPV16
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
5-55
148-182


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
61-105
315-349


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
65-100


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
3-37
159-193


PVE2_HPV31
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
13-47
159-193


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
61-105


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
63-101
297-331


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
62-106
158-192


PVE2_HPV41
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
74-110
323-357


PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
6-54


PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
5-55
148-182


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
154-191


PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
13-47
179-213


PVE2_HPV5B
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
2-36


PVE2_PAPVD
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
5-57


PVE2_PAPVE
PROBABLE E2 PROTEIN
DEER PAPILLOMAVIRUS
107-141


PVE2_PCPV1
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
113-150


PVE2_RHPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
318-361


PVE39_NPVAC
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
62-106
307-341


PVE39_NPVOP
EARLY 39 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
20-57


PVE4_HPV18
EARLY 39 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
119-156




VIRUS


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
42-86


PVE5_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-97


PVEF_GVTN
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
3-40
96-130


PVENV_BEV
VIRAL ENHANCING FACTOR (VEP)(104 KD
TRICHOPLUSIA NI GRANULOSIS VIRUS (TNGV)
681-719



GLYCOP


PVENV_DHV11
ENVELOPE PROTEIN
BERNE VIRUS (BEV)
195-229


PVENV_MCV1
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61)(DHO)
318-366


PVENV_MCV2
MAJOR ENVELOPE PROTEIN (43 KD PROTEIN)
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1 (MCVI)
232-286



(P43K)


PVENV_THOGV
MAJOR ENVELOPE PROTEIN (43 KD PROTEIN)
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2 (MCVII)
252-286



(P43K)


PVENV_VACCC
ENVELOPE GLYCOPROTEIN PRECURSOR
TROGOTO VIRUS (THO)
313-354



(SURFACE


PVENV_VACC1
MAJOR ENVELOPE PROTEIN (37 KD PROTEIN)
VACCINIA VIRUS (STRAIN COPENHAGEN)
257-295



(P37K)


PVENV_VACCP
MAJOR ENVELOPE PROTEIN (37 KD PROTEIN)
VACCINIA VIRUS (STRAIN IHD-J)
257-295



(P37K)


PVENV_VACCV
MAJOR ENVELOPE PROTEIN (37 KD PROTEIN)
VACCINIA VIRUS (STRAIN L-ILVP)
257-295



(P37K)


PVENV_VARV
MAJOR ENVELOPE PROTEIN (37 KD PROTEIN)
VACCINIA VIRUS (STRAIN WR)
257-295



(P37K)


PVETS_NPVAC
MAJOR ENVELOPE PROTEIN (37 KD PROTEIN)
VARIOLA VIRUS
257-295



(P37K)


PVF01_VACCC
ECORI-T SITE PROTEIN ETS
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
1-53


PVF01_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN), AND VACCINIA
46-80
124-158




VIRUS


PVF03_VACCC
PROTEIN F1 (FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
46-80
124-158


PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
71-110


PVF05_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
71-110


PVF05_VACCP
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-129
282-320



PRECURSOR


PVF05_VACCV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
81-129
282-320



PRECURSOR


PVF05_VARV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN WR)
81-129
283-321



PRECURSOR


PVF06_VARV
36 KD MAJOR MEMBRANE PROTEIN
VARIOLA VIRUS
81-122
281-322



PRECURSOR


PVF11_VACCC
PROTEIN F6
VARIOLA VIRUS
8-44


PVF11_VACCP
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-258
269-315


PVF11_VARV
PROTEIN F11
VACCINIA VIRUS (STRAIN L-IVP)
213-254
265-311


PVF12_VACCC
PROTEIN F11
VARIOLA VIRUS
41-75
269-315


PVF12_VACCP
PROTEIN F12
VACCINIA VIRUS (STRAIN COPENHAGEN)
1-67
102-143
199-236
350-388
544-581


PVF12_VARV
PROTEIN F12
VACCINIA VIRUS (STRAIN L-IVP)
1-67
102-143
199-236
350-388
544-581


PVF16_VACCC
PROTEIN F12
VARIOLA VIRUS
1-67
199-236
350-388
547-581


PVF16_VACCP
PROTEIN F16
VACCINIA VIRUS (STRAIN COPENHAGEN)
155-194


PVF16_VARV
PROTEIN F16
VACCINIA VIRUS (STRAIN L-IVP)
155-194


PVFP3_FOWPV
PROTEIN F16
VARIOLA VIRUS
155-194


PVFP4_FOWPV
PROTEIN FP3
FOWLPOX VIRUS
1-43


PVFP7_FOWPV
PROTEIN P4
FOWLPOX VIRUS
139-173
239-273


PVFPL_FOWP1
PROTEIN FP7
FOWLPOX VIRUS
23-57


PVFUS_VACCV
FPLEET PROTEIN (FRAGMENT)
FOWLPOX VIRUS (STRAIN FP-1)
77-111


PVFUS_VACCV
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
30-64


PVG01_HSV11
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
30-64


PVG01_VACCC
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
271-306
512-563
591-647
730-764


PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
301-339


PVG01_VARV
PROTEIN G1 (FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
240-278


PVG03_HSVEB
PROTEIN G1
VARIOLA VIRUS
301-339


PVG03_HSVEK
GENE 3 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)(EHV-1)
143-177


PVG03_VARV
GENE 3 PROTEIN (ORF L1)
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)(EHV-1)
143-177


PVG05_VACCC
PROTEIN G3
VARIOL VIRUS
64-98


PVG05_VARV
PROTEIN G5
VACCINIA VIRUS (STRAIN COPENHAGEN)
117-158
255-289
355-389


PVG06_HSV11
PROTEIN G5
VARIOLA VIRUS
117-158
255-289
355-389


PVG07_HSV11
HYPOTHETICAL GENE 6 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
61-109


PVG07_VACCC
HYPOTHETICAL GENE 7 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
69-103


PVG07_VARV
PROTEIN G7
VACCINIA VIRUS (STRAIN COPENHAGEN)
114-175
324-358


PVG09_VACCC
PROTEIN G7
VARIOLA VIRUS
114-175
324-358


PVG09_VACCV
PROTEIN F1 (PROTEIN G9)
VACCINIA VIRUS (STRAIN COPENHAGEN)
304-338


PVG09_VARV
PROTEIN F1 (PROTEIN G9)(FRAGMENT)
VACCINIA VIRUS (STRAIN WR)
304-338


PVG10_HSV11
PROTEIN F1 (PROTEIN G9)
VARIOLA VIRUS
304-338


PVG12_SPV1R
HYPOTHETICAL GENE 10 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
63-97


PVG16_HSVSA
GENE 12 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
11-45


PVG17_HSV11
HYPOTHETICAL GENE 16 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
58-95


PVG18_HSV11
HYPOTHETICAL GENE 17 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
92-129
177-211


PVGIL_AMEPV
HYPOTHETICAL GENE 18 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
174-208
215-256


PVG1_SPV1R
GIL PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
407-441


PVG1_SPV4
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
136-170
256-297
320-357


PVG22_HSV11
CAPSID PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
287-321


PVG24_HSV11
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
117-158
437-629
660-892
899-








1055


PVG27_HSV11
HYPOTHETICAL GENE 24 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
7-72
74-108


PVG28_HSV11
HYPOTHETICAL GENE 27 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
164-219


PVG2R_AMEPV
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
253-290


PVG2_SPV1R
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
29-63
184-218


PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
222-256
285-326


PVG33_HSVH
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
255-310


PVG34_HSV11
HYPOTHETICAL GENE 33 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
149-183


PVG35_HSV11
HYPOTHETICAL GENE 34 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
345-379


PVG37_HSV11
HYPOTHETICAL GENE 35 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
17-90


PVG38_HSV11
HYPOTHETICAL GENE 37 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV
435-472


PVG39_HSV11
HYPOTHETICAL GENE 38 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
84-118


PVG3_SPV1R
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
124-158
266-300


PVG3_SPV4
GENE 3 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
8-49
162-196
203-244


PVG43_HSV11
GENE 3 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
6-54
87-121


PVG45_HSVSA
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
116-150
262-296
324-361
643-677


PVG46_HSV11
HYPOTHETICAL GENE 45 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
121-162


PVG48_HSV11
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
45-86
939-
1251-






1078
1321


PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
169-207


PVG49_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
360-417
611-666
733-767


PVG4R_AMEPV
HYPOTHETICAL GENE 49 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
68-102


PVG4_SPV4
G4R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
4-38


PVG51_HSV11
GENE 4 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
89-130


PVG51_HSVSA
HYPOTHETICAL GENE 51 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
34-73
89-123


PVG53_HSV11
GENE 51 GLYCOPROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
29-70
123-157
162-196


PVG54_HSV11
HYPOTHETICAL GENE 53 PROTEIN
ICTALURID HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
67-127


PVG55_HSV11
HYPOTHETICAL GENE 54 PROTEIN
ICTALUIUD HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
355-396


PVG55_HSVSA
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
101-135


PVG56_HSV11
HYPOTHETICAL GENE 55 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
126-178


PVG59_HSV11
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
151-192
578-612
644-678
750-784
846-880
1111-










1145


PVG59_HSVSA
HYPOTHETICAL GENE 59 MEMBRANE PROTEIN
ICTALURID HERPES VIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
10-72
89-123


PVG5_SPV1R
GENE 59 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
169-209


PVG61_HSV11
GENE 5 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
65-103


PVG63_HSV11
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
265-299


PVG65_HSV11
HYPOTHETICAL GENE 63 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
546-584


PVG66_HSV11
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
805-839
1213-






1254


PVG67_HSV11
HYPOTHETICAL GENE 66 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
154-188
328-410


PVG68_HSV11
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS I (CHANNEL CATFISH VIRUS)(CCV)
379-413
501-546
1321-
1478-







1369
1541


PVG72_HSV11
HYPOTHETICAL GENE 68 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
245-288


PVG75_HSV11
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
447-484
723-757
912-949


PVG8_SPVIR
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
271-305
388-422


PVGF1_IBVB
GENE 8 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
5-51


PVGH3_HCMVA
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE)
142-179
1233-
2119-
3388-
3475-
3517-
3761-




(1

1267
2156
3424
3513
3556
3795


PVGL1_CVPR8
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)


PVGL2_CVBF
E1 GLYCOPROTEIN PRECURSOR (MATRIX
PORCINE RESPIRATORY CORONAVIRUS (STRAIN 86/137004/BRI
212-257



GLYCOP


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR (SPIKE
BOVINE CORONAVIRUS (STRAIN F15
642-676
850-885
993-
1263-



GLYCOPRO



1088
1305


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR (SPIKE
BOVINE CORONAVIRUS (STRAIN L9)
850-885
993-
1263-



GLYCOPRO


1109
1305


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR (SPIKE
BOVINE CORONAVIRUS (STRAIN LY-138)
642-676
850-885
993-
1263-



GLYCOPRO



1109
1305


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR (SPIKE
BOVINE CORONAVIRUS (STRAIN MEBUS
642-676
850-885
993-
1263-



GLYCOPRO



1109
1305


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR (SPIKE
BOVINE CORONAVIRUS (STRAIN QUEBEC)
642-676
850-885
993-
1263-



GLYCOPRO



1109
1305


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR (SPIKE
BOVINE CORONAVIRUS (STRAIN VACCINE)
646-676
850-885
993-
1263-



GLYCOPRO



1109
1305


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR (SPIKE
HUMAN CORONAVIRUS (STRAIN 229E)
770-916
1055-



GLYCOPRO


1112


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR (SPIKE
MURUNE CORONAVIRUS MHV (STRAIN WILD TYPE 4)(MHV-4)
643-684
1101-
1270-



GLYCOPRO


1117
1315


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR (SPIKE
MURINE CORONAVIRUS MHV (STRAIN A59)
591-632
949-
1218-



GLYCOPRO


1079
1263


PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR (SPIKE
MURINE CORONAVIRUS MHV (STRAIN JHMV/VARIANT CL-2)
643-684
1001-
1270-



GLYCOPRO


1117
1315


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR (SPIKE
MURINE CORONAVIRUS MHV (STRAIN JHM)
503-543
860-976
1129-



GLYCOPRO



1174


PVGL2_CVPM1
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
69-110
448-482
692-733
889-923
1040-
1352-



GLYCOPRO





1186
1389


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
69-110
448-482
692-733
889-923
1040-
1352-



GLYCOPRO





1186
1389


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
69-110
448-482
692-733
889-923
1040-
1352-



GLYCOPRO





1186
1389


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
69-110
448-482
692-733
889-923
1040-
1352-



GLYCOPRO





1186
1389


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE RESPIRATORY CORONAVIRUS (STRAIN 86/137004/BRIT
224-258
468-509
665-699
816-962
1128-



GLYCOPRO





1165


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)(PRCV)
224-258
468-509
665-699
816-962
1128-



GLYCOPRO





1165


PVGL2_EBV
E2 GLYCOPROTEIN PRECURSOR (SPIKE
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
69-110
69-110
446-480
690-731
887-921
1038-
1350-



GLYCOPRO






1038
1387


PVGL2_FIPV
PROBABLE MEMBRANE GLYCOPROTEIN

68-102


PVGL2_IBV6
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
189-245
451-485
695-736
892-926
1043-
1355-









1189
1392


PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82)
791-905
1057-






1091


PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE)
437-478
772-904
1056-







1090


PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D274)
773-905
1057-






1091


PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
437-478
772-904
1056-







1090


PVGLB_HCMVA
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41)
437-478
772-904
1056-







1090


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-88
128-162
436-484
844-878


PVGLB_HSV11
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
22-88
128-162
437-478
451-485
845-879


PVGLB_HSV1F
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
828-890


PVGLB_HSV1K
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)]
827-889


PVGLB_HSV1P
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
827-889


PVGLB_HSV23
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN PATTON)
828-890


PVGLB_HSV2H
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
828-890


PVGLB_HSV2S
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
828-890


PVGLB_HSV6U
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN SA8)
817-871


PVGLB_HSVB1
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
37-71
185-223


PVGLB_HSVB2
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
859-913


PVGLB_HSVBC
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
440-474
848-902


PVGLB_HSVE1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
863-900


PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
542-576
911-961


PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
474-515
847-900


PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
542-576
911-961


PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
542-576
911-961


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D)
542-576
910-960


PVGLB_HSVSA
GLYCOPROTEIN B PRECURSOR
MARAK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
390-435
649-683
787-845


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
240-288
406-447


PVGLB_PRV1F
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
206-260
427-475
693-734
744-778
860-894


PVGLB_VZVD
GLYCOPROTEIN GII PRECURSOR
PSEUDORABIES VIRUS (STRAIN INDIANA-FUNKHAUSER/BECKE
847-881


PVGLC_HSV11
GLYCOPROTEIN B PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
92-133
596-630
809-867


PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
469-510


PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
469-510


PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
442-476


PVGLC_HSVBC
GLYCOPROTEIN C PRECURSOR
HEAPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
443-477


PVGLC_HSVEB
GLYCOPROTEIN GIII PRECURSOR
BOVINE HERPES VIRUS TYPE 1 (STRAIN COOPER)
235-269


PVGLC_HSVMB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND (STRAIN
182-218




KEN


PVGLC_HSVMD
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1)
63-97



PRECURSOR


PVGLC_HSVMG
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
63-97



PRECURSOR


PVGLC_HSVMM
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN GA)
62-96



PRECURSOR


PVGLC_PRV1F
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN MD5)
63-97



PRECURSOR


PVGLC_VZVD
GLYCOPROTEIN GIII PRECURSOR
PSEUDORABIES VIRUS (STRAIN INDIANA-FUNKHAUSER/BECKE
183-235


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
280-321


PVGLD_HSVEA
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
280-321


PVGLD_HSVEB
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
89-123


PVGLD_HSVEK
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND (STRAIN
139-173




KEN


PVGLE_HSV11
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
139-173


PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
111-145


PVGLF_BRSVA
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-159


PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
146-202
504-545


PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN
146-202
267-302
506-547




COPENHAGE


PVGLF_CDVO
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94)
146-202
267-302
506-554


PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
228-297
340-381
568-602


PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI
116-203
267-302
506-549


PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2
116-202
267-302
506-549


PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAI
116-202
267-302
506-547


PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSS-2)
116-202
267-302
506-549


PVGLF_MEAS1
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN EDMONSTON) AND (STRAIN HALLE)
116-184
228-269
452-500


PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA)
119-187
231-272
455-503


PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
116-184
228-269
452-500


PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
20-54
103-179
235-272
447-502


PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
20-54
103-179
235-272
447-502


PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
20-54
103-179
235-272
447-502


PVGLF_NDVA
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
20-54
103-179
235-272
447-502


PVGLF_NDVB
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
117-182
231-272
426-512




VICTORIA/32)


PVGLF_NDVH3
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
122-182
231-272
426-517


PVGLF_NDVH4
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN HER/33)
117-182
231-272
426-517


PVGLF_NDV1
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47)
122-182
231-272
426-517


PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)
133-182
230-272
426-517


PVGLF_NDVM
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN LAS/46)
133-182
231-272
426-517


PVGLF_NDVQ
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)
117-182
231-272
426-512


PVGLF_NDVT
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)
122-182
231-272
433-512


PVGLF_NDVTG
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS)
117-182
231-272
426-517


PVGLF_NDVU
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48)
122-182
231-272
426-517


PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
122-182
231-272
426-512


PVGLF_PI1HC
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
29-63
197-266
309-350
533-581


PVGLF_PI2H
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
123-174
207-267
459-503


PVGLF_PI2HG
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
93-183
477-528


PVGLF_PI2HT
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN GREER)
93-183
477-528


PVGLF_PI3B
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
93-183
477-528


PVGLF_PI3H4
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
117-182
207-241
456-518


PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
117-182
207-241
462-532


PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN KABETE O)
112-180
224-263
448-493


PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN L)
112-180
224-265
441-506


PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
127-188
211-271
463-533


PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
127-188
211-271
463-533


PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
127-188
218-271
463-533


PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
127-188
211-271
463-533


PVGLF_SV41
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
127-188
211-271
463-533


PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 41
96-186
454-508


PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3)
103-171
241-275
451-487


PVGLG_BEFV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS (
105-161
190-224
457-498


PVGLG_BRSVC
SPIKE GLYCOPROTEIN PRECURSOR
BOVINE EPHEMERAL FEVER VIRUS
506-612


PVGLG_HRSV1
MAJOR SURFACE GLYCOPROTEIN G
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN
30-70
104-138




COPENHAGE


PVGLG_HRSV2
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI
30-81


PVGLG_HRSV3
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB642
30-85


PVGLG_HRSV4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB1734
30-85


PVGLG_HRSV5
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB5857)
30-107


PVGLG_HRSV6
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB6190)
30-85


PVGLG_HRSV7
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB6256)
30-85


PVGLG_HRSV8
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSB6614)
30-85


PVGLG_HRSVA
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAI
30-81


PVGLG_HRSVL
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
30-67


PVGLG_HSVE4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAI
25-85


PVGLG_SIGMA
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
271-305


PVGLG_SYNV
SPIKE GLYCOPROTEIN PRECURSOR
SIGMA VIRUS
344-381
464-498


PVGLG_VHSV0
SPIKE GLYCOPROTEIN PRECURSOR
SONCHUS YELLOW NET VIRUS
488-523


PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
363-397


PVGLH_EBV
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN G
476-510


PVGLH_HCMVA
GLYCOPROTEIN GP85 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
53-87
160-201
336-380
653-694


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
103-137
270-311
693-741


PVGLH_HSV11
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
102-136
692-740


PVGLH_HSV1E
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
447-481


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HEFM)
447-481


PVGLH_HSVBC
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
357-406


PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
364-416


PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
334-379
414-455


PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND (ISOLATE
327-372
407-448




HV


PVGLH_MCMVS
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
32-66
374-453
664-712


PVGLH_PRVKA
GLYCOPROTEIN H PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH
440-474


PVGLH_PRVN3
GLYCOPROTEIN H PRECURSOR
PSEUDORADIES VIRUS (STRAIN KAPLAN)
226-260


PVGLH_PRVRJ
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN NIA-3)
226-260


PVGLH_VZVD
GLYCOPROTEIN H PRECURSOR
PSEUDORABIES VIRUS (STRAIN RICE)
226-260


PVGLI_HCMVA
PROBABLE GLYCOPROTEIN H PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
455-506


PVGLM_BUNGE
IMMEDIATE EARLY GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-111
323-359



PRECURSOR


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
512-567
685-737
1228-







1262


PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
643-677
916-950


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOE HARE
643-677


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
340-374
504-563
905-939


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
937-989
1239-






1300


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
693-727


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
72-106


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
72-106


PVGLM_INSV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
72-106


PVGLM_PHV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS
1067-





1101


PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
73-111


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
149-251


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
693-727


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
694-728


PVGLN_BEFV
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
693-730


PVGLP_BEV
NONSTRUCTURAL GLYCOPROTEIN GNS
BOVINE EPHEMERAL FEVER VIRUS
377-414
513-569



PRECURSO


PVGLX_PRVR1
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS
43-82
90-124
622-656
1128-








1236


PVGLY_JUNIN
SECRETED GLYCOPROTEIN GX
PSEUDORABIES VIRUS (STRAIN RICE)
420-461


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSOR
JUNIN ARENAVIRUS
301-349


PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN GA391)
317-360
388-422


PVGLY_LYCVA
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN JOSIAH)
318-361
389-423


PVGLY_LYCVW
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN
333-367
395-432




ARMSTRON


PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE)
124-158
333-367
395-432


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
MOPEIA VIRUS
316-359


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
PICHINDE ARENAVIRUS
334-375


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS
315-363


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V5)
303-351
332-416


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V7)
302-350
381-415


PVGNB_CPMV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN TRVL 11598)
303-351
382-416


PVGNM_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS
835-869


PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS
160-201


PVGNM_RCMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
192-226
758-792
874-915


PVGP8_EBV
GENOME POLYPROTEIN M
RED CLOVER MOTTLE VIRUS
837-871
912-946


PVGP_EBOV
PROBABLE MEMBRANE ANTIGEN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8)
94-149


PVGP_MABVM
STRUCTURAL GLYCOPROTEIN PRECURSOR
EBOLA VIRUS
280-321
334-368
469-503


PVGP_MABVP
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN MUSOKE)
562-596


PVH02_VACCC
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN POPP)
562-596


PVH02_VACCV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN COPENHAGEN)
58-92


PVH02_VARV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN WR)
58-94


PVH05_VACCC
LATE PROTEIN H2
VARIOLA VIRUS
58-92


PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
118-185


PVH05_VARV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
118-185


PVHEL_LSV
PROTEIN H5
VARIOLA VIRUS
136-203


PVHRP_VACCC
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS
126-160


PVHRP_VACCV
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
216-279


PV103_VACCC
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
216-279


PV103_VACCV
PROTEIN 13
VACCINIA VIRUS (STRAIN COPENHAGEN)
150-193
210-244


PV103_VARV
PROTEIN 13
VACCINIA VIRUS (STRAIN WR)
150-193
210-244


PV106_VACCV
PROTEIN 13
VARIOLA VIRUS
150-193
210-244


PV106_VARV
PROTEIN 16
VACCINIA VIRUS (STRAIN WR)
58-92


PV107_VARV
PROTEIN 16
VARIOLA VIRUS
58-92


PV108_VACCC
PROTEIN 17
VARIOLA VIRUS
373-407


PV108_VACCV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN COPENHAGEN)
548-589


PV108_VARV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN WR)
548-589


PV1E1_HCMVA
PUTATIVE RNA HELICASE 18
VARIOLA VIRUS
548-589


PV1E1_HCMVT
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
73-112
171-205
368-402
416-450


PV1E1_MCMVS
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
78-112
171-205
383-402
416-450


PV1E2_NPVOP
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
244-297


PVIEN_NPVAC
IMMEDIATE-EARLY PROTEIN IE-2
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
94-128
305-395




VIRUS


PVIF_CAEVC
IMMEDIATE-EARLY REGULATORY PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
277-407



IE-N


PVIF_FIVPE
VIRION INFECTIVITY FACTOR
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK)
23-92


PVIF_FIVSD
VIRION INFECTIVITY FACTOR
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA)
53-94


PVIF_HV1A2
VIRION INFECTIVITY FACTOR
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO)
32-80


PVIF_HV1B1
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2
1-42
62-96




ISOLATE


PVIF_HV1B5
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10, BRU, HXB2,
1-42
62-96




PV


PVIF_HV1EL
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE)
1-42
62-96


PVIF_HV1JR
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
1-42
62-96


PVIF_HV1MA
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)
1-42
62-96


PVIF_HV1MN
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)
2-36


PVIF_HV1NS
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
1-42
62-96


PVIF_HV1NA
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5
1-42
62-96




ISOL


PVIF_HVIND
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ISOLATE NIT-A)
1-42
62-96


PVIF_HV1OY
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE)
1-42
62-96


PVIF_HV1RH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE)
1-42
62-96


PVIF_HV1RU
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE)
1-42
62-96


PVIF_HV1Z2
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN UGANDAN
1-42


FVOF_HV1Z6
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34
1-42
62-96




ISOLAT


PVIF_HV2D2
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6 ISOLATE)
1-42
62-96


PVIF_HV2NZ
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7)
147-195


PVIF_HV2RO
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z)
152-193


PVIF_OMVVS
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD)
163-197


PVIF_SIVAI
VIRION INFECTIVITY FACTOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
44-114


PVIF_SIVAG
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
2-58
150-202


PVIF_SIVAI
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
17-58


PVIF_SIVAT
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE GR
2-36
143-187


PVIF_SIVCZ
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
20-58
150-195


PVIF_SIVGB
VIRION INFECTIVITY FACTOR
CHIMPANZEE IMMUNODEFICIENCY VIRUS
1-42


PVIMP_HSV11
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
1-39


PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
85-134


PVIMP_HSVSA
PROBABLE INTEGRAL MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
148-182
335-369


PVIMP_VZVD
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
80-129


PVINT_SSV1
PROBABLE INTEGRAL MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-151
155-189
267-301


PVJ01_VACCC
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
85-130
138-172


PVJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-56


PVJ01_VARV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
22-56


PVK03_VACCC
PROTEIN J1
VARIOLA VIRUS
22-56


PVK03_VACCV
PROTEIN K3
VACCINIA VIRUS (STRAIN COPENHAGEN)
38-82


PVK07_VACCV
PROTEIN K3
VACCINIA VIRUS (STRAIN WR)
38-82


PVL02_VACCC
PROTEIN K7
VACCINIA VIRUS (STRAIN WR), AND (STRAIN COPENHAGEN)
115-149


PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
47-81


PVL02_VARV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
47-92


PVL1_CRPVK
PROTEIN L2
VARIOLA VIRUS
47-81


PVL1_FPVL
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN
261-295
331-383




KANS


PVL1_HPV05
PROBABLE L1 PROTEIN
AVIAN PAPILLOMAVIRUS FPV-L
38-90


PVL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
355-393


PVL1_HPV1A
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392


PVL1_HPV47
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
345-379


PVL1_PAPVD
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
353-391


PVL1_REOVD
PROBABLE L1 PROTEIN
DEER PAPILLOMAVIRUS
23-57


PVL2_HPV05
MAJOR CORE PROTEIN LAMBDA 1
REO VIRUS (TYPE 3/STRAIN DEARING)
94-142
437-471


PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE
341-375


PVL2_HPV16
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392


PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
295-333


PVL2_HPV31
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
345-379


PVL2_HPV35
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
288-326


PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
292-333


PVL2_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
341-375


PVL2_HPV5B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
293-327


PVL3_REOVD
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
341-375


PVL3_REOVJ
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 3/STRAIN DEARING)
107-148
1112-






1178


PVL3_REOVL
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 2/STRAIN D5/JONES)
1112-





1178


PVL96_IRV1
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 1/STRAIN LANG)
107-148
331-365
1112-







1178


PVM01_VACCC
L96 PROTEIN
TIPULA IRIDESCENT VIRUS
146-180
198-236


PVM1_REOVL
PROTEIN M1
VACCINIA VIRUS (STRAIN COPENHAGEN)
5-56


PVM21_REOVD
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 1/STRAIN LANG)
287-321


PVM22_REOVD
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
416-450
619-663



MU-1/MU-1C


PVM2_REOVJ
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
416-450
618-662



MU-1/MU-1C


PVM2_REOVL
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
416-450
618-662



MU-1/MU-1C


PVM3_REOVD
MAJOR VIRION STRUCTURAL PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
416-450
618-662



MU-1/MU-1C


PVMA2_BRSVA
MAJOR NONSTRUCTURAL PROTEIN MU-NS
REOVIRUS (TYPE 3/STRAIN DEARING)
135-190
337-371
523-558
618-690


PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
42-90


PVMA2_TRTV
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
42-90


PVMAT_CDVO
MATRIX GLYCOPROTEIN M2
TURKEY RHINOTRACHEITIS VIRUS
36-70


PVMAT_INCJJ
MATRIX PROTEIN
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
193-234


PVMAT_NDVA
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
73-114
151-208


PVMAT_NDVB
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
310-358




VICTORIA/32)


PVMAT_PI3B
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
324-358


PVMAT_PI3H4
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
99-133
204-252


PVMAT_RABVA
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
99-133
204-252


PVMAT_RABVC
MATRIX PROTEIN
RABIES VIRUS (STRAIN AVO1)
69-103


PVMAT_RABVE
MATRIX PROTEIN
RABIES VIRUS (STRAIN CVS-11)
69-103


PVMAT_RABVN
MATRIX PROTEIN
RABIES VIRUS (STRAIN ERA)
69-103


PVMAT_RABVP
MATRIX PROTEIN
RABIES VIRUS (STRAIN NISHIGAHARA RCEH)
69-103


PVMAT_RABVS
MATRIX PROTEIN
RABIES VIRUS (STRAIN PV)
69-103


PVMAT_SYNV
MATRIX PROTEIN
RABIES VIRUS (STRAIN SAD B19)
69-103


PVMAT_VSVIG
MATRIX PROTEIN
SONCHUS YELLOW NET VIRUS
246-280


PVME1_CVBM
MATRIX PROTEIN
VESICULAR STONIATITIS VIRUS (SEROTYPE INDIANA/STRAIN G
198-232


PVME1_CVPFS
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
175-209


PVME1_CVPPU
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
98-146
212-257


PVME1_CVPRM
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
212-257


PVME1_CVTKE
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
212-257


PVME1_FIPV
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
28-62
175-209


PVME1_IBV6
E1 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
212-257


PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82)
21-55
177-218


PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE)
21-55
177-218


PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE
21-55
177-218




M


PVMEM_EBV
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
177-218


PVMP_CAMVC
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
36-94


PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
187-234
270-324


PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
187-254
270-324


PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
187-254
270-324


PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
187-254
270-324


PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
187-254
270-324


PVMP_CERV
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
187-254
270-324


PVMP_FMVD
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
212-246


PVMP_SOCMV
MOVEMENT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
217-251


PVMSA_HPBDB
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
76-118


PVMSA_HPBDC
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK ISOLATE
272-313
324-361




S


PVMSA_HPBDU
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
271-312
323-360


PVMSA_HPBDW
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
234-273
289-323


PVMSA_HPBGS
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK ISOLATE
272-313
324-361




S3


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
GROUND SQUIRREL HEPATITIS VIRUS
210-244


PVMSA_WHV1
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
294-328


PVMSA_WHV59
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 1
208-242


PVMSA_WHV7
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 59
213-247


PVMSA_WHV81
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 7
213-247


PVMIT1_DHV11
PROBABLE MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE)
213-247



PRECURSOR


PVMT1_IAANN
MATRIX PROTEIN 1
DHORI VIRUS (STRAIN INDIAN/1313/61)
201-235


PVMT1_IABAN
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
92-126
174-222


PVMT1_IACAO
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
92-126
174-222


PVMT1_IAFOW
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82)
31-79


PVMT1_IAFPR
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50), AND (STR
92-126
174-222


PVMT1_IAFPW
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
92-126
174-222




VIRUS/ROSTOCK


PVMF1_IALE1
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
92-126
174-222




VIRUS/WEYBRID


PVMT1_IALE2
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
92-126
174-222


PVMT1_IAMAN
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
92-126
174-222


PVMT1_IAPOC
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
92-126
174-222


PVMIT_IAPUE
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/PORT CHALMERS/1/73)
92-126
174-222


PVMIT_IAUDO
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
92-126
174-222


PVMT1_IAWIL
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
92-126
174-222


PVMT1_IAZ11
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33
92-126
174-222


PVMT1_INBAC
MATRIX (M1) PROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30
92-126
174-222


PVMT1_INBAD
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
175-209




ADAPTE


PVMT1_INBLE
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARDOR/1/66 [WILD-TYPE])
175-209


PVMT1_INSBI
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS (STRAIN B/LEE/50)
175-209


PVMT2_INBAC
MATRIX (M1) PROTEIN
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
175-209


PVMT2_INBAD
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
132-184




ADAPTE


PVMT2_INBLE
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])
132-184


PVMT2_INBSI
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS (STRAIN B/LEE/40)
132-184


PVMT8_MYXVL
PROBABLE MATRIX (M2) PROTEIN
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
132-184


PVN01_VACCC
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
46-80
145-197


PVN01_VACCV
PROTEIN N1
VACCINIA VIRUS (STRAIN COPENHAGEN)
64-112


PVN34_ROTBS
PROTEIN N1
VACCINIA VIRUS (STRAIN WR)
64-112


PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
64-169


PVNCA_AAV2
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
64-117
121-169


PVNCA_RSV
DNA REPLICATION PROTEIN
ADENO-ASSOCIATED VIRUS 2
91-125
217-251


PVNCN_PAVBO
MAJOR NONCAPSID PROTEIN
RICE STRIPE VIRUS
129-163


PVNCS_ADVG
PROBABLE NONCAPSID PROTEIN NP1
BOVINE PARVOVIRUS
221-255


PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G)
19-60
270-304


PVNCS_FPV19
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS (STRAIN GKV 002 002)
276-339
521-571
585-640
715-760
780-849


PVNCS_MEVA
NONCAPSID PROTEIN NS-1
FELINE PANLEUKOPENIA VIRUS (STRAIN 193)
53-98


PVNCS_MUMIM
NONCAPSID PROTEIN NS-1
MINK ENTERITIS VIRUS (STRAIN ABASHIRI)
53-98


PVNCS_MUMIV
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS (STRAIN MVM1)
35-91
261-297


PVNCS_PAVBO
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS
35-87
259-297


PVNCS_PAVCN
PROBABLE NONCAPSID PROTEIN NS1
BOVINE PARVOVIRUS
181-222


PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
CANINE PARVOVIRUS (STRAIN N)
53-98


PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HUMAN PARVOVIRUS B19
236-270


PVNCS_PAVPN
NONCAPSID PROTEIN NS-1
HAMSTER PARVOVIRUS H1
35-76
259-297


PVNS1_BTV10
NONCAPSID PROTEIN NS-1
PORCINE PARVOVIRUS (STRAIN NADL-2)
24-77
169-210
309-346


PVNS1_BTV17
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
107-141


PVNS1_BTV1A
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
107-141


PVNS1_BTV1S
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
107-141


PVNS1_BTV20
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
107-141


PVNS1_EHDV2
NONSTRUCTURAL PROTEIN NS1
BLUETONGUE VIRUS (SEROTYPE 20/ISOLATE AUSTRALIA)
107-141


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 2/STRAI
401-454


PVNS1_IACAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
49-83


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82
37-71


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
49-83


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24)
46-80


PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
49-83


PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
46-80


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
46-80


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
49-83


PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50), AND
49-83




(STRA


PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
49-83




VIRUS/ROSTOCK


PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
49-83


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
49-83


PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76
49-83


PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
49-83


PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78
49-83


PVNS1_IAP10
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MYNAH/HANEDA-THA1/76)
46-80


PVNS1_IAP11
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79
49-83


PVNS1_IAP12
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79)
49-83


PVNS1_IAP13
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/268/78
49-83


PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/358/79)
49-83


PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
49-83


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM-
49-83




GLILIT/14


PVNS1_IATKR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63)
49-83


PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
49-83


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61
46-80


PVNS1_IAZ11
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72)
49-83


PVNS1_INBAC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/I5/30)
49-83


PVNS1_INBGA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
143-177




ADAPTE


PVNS1_INBHK
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/GA/86)
143-177


PVNS1_INBHT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73), AND
143-177




(STRAIN


PVNS1_INBID
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/HT/84)
143-177


PVNS1_INBLE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/ID/86)
143-177


PVNS1_INBMD
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/LEE/40)
143-177


PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
143-177


PVNS1_INBRU
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/PA/79)
143-177
277-337


PVNS1_INBS1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/BRU/69)
139-173


PVNS1_INBSJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
143-177


PVNS1_INBVJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/64)
143-177


PVNS1_INBYA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/VICTORIA/87)
143-177


PVNS2_AHSV9
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
143-177


PVNS2_BTV17
NONSTRUCTURAL PROTEIN NS2
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 9)
67-101


PVNS2_BTV1X
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
203-237


PVNS2_CVMJH
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 10)
203-237


PVNS2_EHDV2
NONSTRUCTURAL PROTEIN NS2
MURINE CORONAVIRUS MHV (STRAIN JHM)
71-105


PVNS2_IAALA
NONSTRUCTURAL PROTEIN NS2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 2/STRAI
206-272
276-311


PVNS2_IAANA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77), AND (STRAIN
14-93




A/U


PVNS2_IAANN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/ANAS ACUTA/PRIMORJE/695/76)
14-93


PVNS2_IACH1
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60), AND
14-93




(STRAIN


PVNS2_IACKG
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
14-93


PVNS2_IACKJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
14-79


PVNS2_IADA2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24)
11-90


PVNS2_IADE1
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
14-79


PVNS2_IADU3
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
11-90


PVNS2_IAFOM
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
11-90


PVNS2_IAFOW
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
14-93


PVNS2_IAFPR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
14-93


PVNS2_IALE2
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
14-93




VIRUS/ROSTOCK


PVNS2_IALEN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
14-93


PVNS2_IAMA6
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
14-93


PVNS2_IAMA8
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76)
14-79


PVNS2_IAMAN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/MALLAD/ALBERTA/827/78)
14-79


PVNS2_IAMAO
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
14-93


PVNS2_IAMYN
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78)
14-93


PVNS2_IAP10
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/MYNAH/HANEDA-THAI/76)
11-90


PVNS2_IAP11
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79)
14-93


PVNS2_IAP12
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79)
14-79


PVNS2_IAPUE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/268/78)
14-93


PVNS2_IATKB
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
14-93


PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM-
14-79




GLILIT/14


PVNS2_IATRS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71
14-79


PVNS2_IAUSS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61)
11-52


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
14-93


PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40
2-43
59-119


PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
2-43
59-119


PVNS2_PVM
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS (STRAIN C/JJ/50)
57-98


PVNS3_AHSV3
NONSTRUCTURAL PROTEIN 2
PNEUMONIA VIRUS OF MICE
70-104


PVNS3_AHSV9
NONSTRUCTURAL PROTEIN NS3
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 3)
44-78
166-215


PVNS3_BRD
NONSTRUCTURAL PROTEIN NS3
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 9)
37-78
88-122
166-215


PVNS3_CVPFS
NONSTRUCTURAL PROTEIN NS3
BROADHAVEN VIRUS
26-98
102-147


PVNS4_CVH22
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (S
13-51


PVNS4_RSV
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
11-52


PVNS7_CVCAE
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
2-40


PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
11-47


PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683)
1-42


PVNSC_CDVO
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
1-42


PVNSC_MEASE
NONSTRUCTURAL PROTEIN C
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
50-84
95-152


PVNSC_MEASI
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN EDMONSTON)
43-84


PVNSC_MEASY
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN IP-3-CA)
43-84


PVNSC_PI1HB
NONSTRUCTURAL PROTEIN C
MEASLES VIRUS (STRAIN YAMAGATA-1)
43-84


PVNSC_PI1HC
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35)
133-167


PVNSC_PI1HD
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
133-167


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-5/73)
133-167


PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/83)
40-75
133-167


PVNSC_SEND6
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
58-133
161-199


PVNSC_SENDH
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN 6/94)
133-167


PVNSC_SENDZ
NONSTRUCTURAL PROFEIN C
SENDAI VIRUS (STRAIN HARRIS)
133-167


PVNSM_INSV
NONSTRUCTURAL PROTEIN C
SENDAI VIRUS (STRAIN Z)
133-167


PVNST_BUNGE
NONSTRUCTURAL PROTEIN NS-M
IMPATIENS NECROTIC SPOT VIRUS (INSV)
44-102
262-296


PVNST_BUNL7
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS GERMISTON
34-75


PVNST_BUNLC
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE (ISOLATE L74)
5-39


PVNST_MAGV
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE
5-39


PVNST_TOSV
NONSTRUCTURAL PROTEIN NS-S
MAGUARI VIRUS
35-69


PVNST_UUK
NONSTRUCTURAL PROTEIN NS-S
TOSCANA VIRUS (TOS)
144-183


PVNUA_PRVKA
NONSTRUCTURAL PROTEIN NS-S
UUXUNIEMJ VIRUS (UUK)
139-173


PVNUC_DHV11
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS (STRAIN KAPLAN)(PRV)
1134-





1175


PVNUC_EBOV
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61)(DHO)
209-243


PVNUC_IAANA
NUCLEOPROTEIN
EBOLA VIRUS
191-225
227-261
329-369


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANAS ACUTA/PRIMORJE/695/76)
1-42
96-154
357-408


PVNUC_ABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
1-42
357-408


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78)
1-42
357-408


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)
1-42
96-154
357-408


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78)
1-42
357-409


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
1-42
96-154
357-408


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1/83)
1-42
96-154
357-408


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/AUSTRALIA/749/80)
1-42
96-154
357-408


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/BEIJING/1/78)
1-42
96-154
357-408


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/CZECHOSLOVAKIA/56)
1-42
96-154
360-408


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
1-42
96-154
357-408


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/62)
1-42
96-154
357-408


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/HONG KONG/7/75)
1-42
96-154
357-408


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74
1-42
96-154
357-408


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53)
1-42
96-154
357-408


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/NEW ZEALAND/31/76)
1-42
96-154
357-408


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/2/60)
96-154
357-408


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55)
1-42
357-409


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
1-42
357-409


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
357-408


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/DOBSON/
1-42
96-154
357-408


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
1-42
96-154
360-408




VIRUS/ROSTOCK


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GREY TEAL/AUSTRALIA/2/79)
1-42
113-154
357-408


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/5/77)
1-42
357-408


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
96-154
357-409


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1824/78)
1-42
96-154
357-409


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1815/79)
1-42
96-154
357-409


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84)
1-42
96-154
357-409


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MASSACHUSETTS/26/80)
1-42
96-154
357-409


PVNUC_IAH1C
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MINNESOTA/945/80)
1-42
96-154
357-409


PVNUC_IAHJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HICKOX/40)
1-42
357-409


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/JILLIN/1/89)
1-42
96-154
357-408


PVNUC_IAHM1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
1-42
96-154
357-408


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUTNE/MIAMI/1/63)
1-42
96-154


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68)
1-42
357-409


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83)
1-42
357-409


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
96-154
357-408


PVNUC_IAK1E
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
1-42
357-409


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
1-42
96-154
357-408


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS
1-42
96-154
357-408


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
1-42
96- 154
337-408


PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
1-42
96-154
357-408


PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NEW JERSEY/8/76)
1-42
96-154
357-408


PVNUC_IAOH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
1-42
357-409


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/OHIO/4/83)
1-42
357-409


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73)
1-42
96-154
357-408


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
1-42
357-409


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
1-42
96-154
357-408




JERSE


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/1/80)
1-42
96-154
357-408


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SHEARWATER/AUSTRALIA/72)
1-42
357-408


PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
1-42
357-409


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEAL/ICELAND/29/80)
1-42
96-154
357-408


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/1661/81)
1-42
96-154
357-408


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/7732/66)
1-42
96-154
357-408


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61)
1-42
96-154
360-408


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72)
1-42
96-154
357-405


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77)
1-42
357-409


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
1-42
357-409


PVNUC_IAV16
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
1-42
357-408


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68)
357-408


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84)
1-42
96-154
357-409


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/PACIFIC OCEAN/19/76)
1-42
96-154
357-408


PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
1-42
357-409


PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88)
1-42
96-154
357-408


PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/29/37)
1-42
96-154
357-408


PVNUC_JAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/41/49)
1-42
96-154
357-408


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/CAMBRIDGE/1/35)
1-42
357-409


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/DANDONG/9/83)
1-42
357-409


PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/GERMANY/2/81)
1-42
96-154
357-408


PVNUC_IAZH3
NUCLEOPROTEIN
INILUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/6/76)
1-42
357-409


PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
1-42
96-154
357-408


PVNUC_IAZ11
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/127/82)
1-42
96-154
357-408


PVNUC_IAZ12
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
1-42
96-154
357-408


PVNUC_IAZ13
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31)
1-42
96-154
357-408


PVNUC_IAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46)
1-42
96-154
357-408


PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/437/76)
1-42
96-154
357-408


PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/2/79)
1-42
96-154
357-408


PVNUC_IAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/141/81)
1-42
96-154
357-408


PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89)
1-42
96-154
357-408


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42)
1-42
96-154
357-408


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54)
1-42
96-154
357-408


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/NETHERLANDS/12/85)
1-42
96-154
357-408


PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35)
1-42
96-154
357-408


PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81)
1-42
96-154
357-408


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77)
1-42
96-154
357-408


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57)
1-42
96-154
357-408


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57)
1-42
96-154
357-408


PVNUC_INBAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/61)
1-42
96-154
357-408


PVNUC_INBAC
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/86)
75-142
480-514


PVNUC_INBAD
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
75-142
480-514




ADAPTE


PVNUC_INBLE
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])
75-145
480-514


PVNUC_INBS1
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/LEE/40)
75-146
480-514


PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
75-142
480-514


PVNUC_MABVM
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
92-203
406-447


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
173-207
322-407


PVO01_VACCC
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
173-207
322-407


PVO01_VARV
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
102-145
245-279
341-382
581-615


PVOR1_FXMV
PROTEIN O1
VARIOLA VIRUS
102-145
245-279
341-382
581-615


PVOR1_NMR
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
293-327


PVOR1_PMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS (NMV)
1519-





1575


PVOR1_PVMR
176 KD PROTEIN
PAPAYA MOSAIC POTEXYIRUS (PMV)
1-39
299-337
1474-







1532


PVOR1_PVX
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN)(PVM)
597-638
682-739


PVOR1_PVXCP
165 KD PROTEIN
POTATO VIRUS X (PVX)
516-550


PVOR1_SMYEA
165 KD PROTEIN
POTATO VIRUS X (STRAIN CP)(PVX)
510-547


PVOR1_WCMVM
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS (SMYE
308-342
931-965


PVOR1_WCMVO
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)(WCMV)
1240-





1289


PVP10_NPVAC
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)(WCMV)
1240-





1289


PVP10_NPVOP
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
7-41


PVP10_RBSDV
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
7-50




VIRUS


PVP10_RGDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS (RBSDV)
339-382
395-429
506-556


PVP10_WTV
NONSTRUCTURAL PROTEIN PNS10
RICE GALL DWARF VIRUS (RGDV)
186-273


PVP11_RDV
NONSTRUCTURAL PROTEIN PNS10
WOUND TUMOR VIRUS (WTV)
220-254


PVP11_WTV
NONSTRUCTURAL PROTEIN PNS11
RICE DWARF VIRUS (RDV)
25-80
273-314


PVP12_RDV
NONSTRUCTURAL PROTEIN PNS11
WOUND TUMOR VIRUS (WTV)
16-74


PVP12_WTV
NONSTRUCTURAL PROTEIN P11
RICE DWARF VIRUS (RDV))
140-181


PVP18_WTVNJ
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (WTV)
68-108


PVP19_HSVEB
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (STRAIN NJ)(WTV)
68-108


PVP23_HCMVA
CAPSID ASSEMBLY AND DNA MATURATION
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1)
189-231



PROTE


PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALO VIRUS (STRAIN AD169)
41-82
146-180


PVP24_EBOV
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
47-81


PVP26_HSVEB
MEMBRANE-ASSOCIATED STRUCTURAL
EBOLA VIRUS
166-200



PROTEIN V


PVP26_HSVSA
CAPSID PROTEIN VP26
EQUINE HERPESYIRUS TYPE 1 (STRAIN AB4P)(EHV-1)
36-77


PVP26_NPVOP
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI (STRAIN 11)
41-78


PVP26_VZVD
P26 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
118-159




VIRUS


PVP2_AHSV4
CAPSID PROTEIN VP26
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)(VZV)
47-81


PVP2_BTV10
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCI
136-188
270-304
410-465
614-662
684-720
976-










1056


PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
168-225


PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
77-111
559-593


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
77-111
168-209


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
119-153
576-610
668-702


PVP2_ROTBR
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
72-106
247-301
405-453
461-495
895-929




(EHDV


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
2-94
482-516
523-557
607-655
675-754


PVP2_ROTHW
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
2-94
483-517
524-558
608-656
676-755


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
17-97
492-526
533-567
617-658
685-764


PVP2_ROTS1
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
1-50
52-99
194-228
515-551
599-643
705-746


PVP30_ASFE7
RNA-BINDING PROTEIN VP2
SIMIAN II ROTAVIRUS (STRAIN SA11)
36-96
483-517
608-656
680-755


PVP31_FRG3V
PHOSPHOPROTEIN P30
AFRICAN SWINE FEVER VIRUS (STRAIN E-75)(ASFV)
29-89


PVP32_ASFB7
EARLY 31 KD PROTEIN
FROG VIRUS 3 (FV3)
227-261


PVP35_EBOV
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)(ASFV)
29-89


PVP35_NPVAC
POLYMERASE COMPLEX PROTEIN VP35
EBOLA VIRUS
80-119


PVP35_NPVBM
EARLY 35 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
54-102


PVP35_VACCC
EARLY 35 KD PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS (BMNPV)
54-102
224-258


PVP35_VACCP
IMMUNODOMINANT ENVELOPE PROTEIN P35
VACCINIA VIRUS (STRAIN COPENHAGEN)
140-181


PVP35_VACCV
IMMUNODOMINANT ENVELOPE PROTEIN P35
VACCINIA VIRUS (STRAIN L-IVP)
17-51


PVP35_VARV
IMMUNODOMINANT ENVELOPE PROTEIN P35
VACCINIA VIRUS (STRAIN WR)
140-181


PVP3_AHSV4
IMMUNODOMINANT ENVELOPE PROTEIN P35
VARIOLA VIRUS
141-182


PVP3_BTV10
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCI
173-214
240-274
667-704


PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
214-255
853-894


PVP3_BTV1A
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
214-255
853-894


PVP3_EHDV1
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA
214-255
853-894


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
208-246
798-832
851-892




(EHDV


PVP3_GFLV
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
208-246
735-770
798-832
851-892


PVP3_RDV
P3 PROTEIN
GRAPEVINE FANLEAF VIRUS (GLFV)
96-133


PVP3_ROTPC
MAJOR 114 KD STRUCTURAL PROTEIN
RICE DWARF VIRUS (RDV)
299-337
817-872


PVP3_ROTS1
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
24-58
229-263
329-395
406-446
640-688


PVP40_EBV
INNER CORE PROTEIN VP3
SIMIAN II ROTAVIRUS (STRAIN SA11)
26-76
244-278
331-365
451-492
662-696


PVP40_HSV11
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
433-467


PVP40_HSVEB
CAPSID PROTEIN P40
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
206-257
599-633


PVP40_ILTVT
CAPSID PROTEIN P40
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1)
180-245


PVP40_SCMVC
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE
1-35
509-557




V88


PVP40_VZVD
CAPSID PROTEIN P40
SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN)
457-498


PVP41_NPVAC
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)(VZV)
167-246
486-522


PVP41_ROTS1
STRUCTURAL GLYCOPROTEIN GP41
AUTOGRAPHIA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
132-166


PVP42_R0TS1
OUTER CAPSID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11)
1-35
484-518
528-630


PVP4A_VACCC
OUTER CAPSID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11)
1-35
237-518
531-646


PVP4A_VACCV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
355-359
718-763
794-828
857-891


PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN WR)
262-296
355-359
718-763
794-828
857-891


PVP4B_FOWPV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
355-389
719-764
795-829
858-892


PVP4B_VACCC
MAJOR CORE PROTEIN P4B PRECURSOR
FOWLPOX VIRUS
131-172
296-330


PVP4B_VACCV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-37
125-163
249-283


PVP4B_VARV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN WR)
3-37
125-163
249-283


PVP4_BTV10
MAJOR CORE PROTEIN P4B PRECURSOR
VARIOLA VIRUS
3-37
125-163
249-283


PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
579-617
619-653


PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
569-607
609-643


PVP4_BTV2A
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
569-607
609-643


PVP4_NCDV
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
569-607
609-643


PVP4_RDV
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS (STRAIN NCDV-LINCOLN)
484-518
528-630


PVP4_ROTB4
NONSTRUCTURAL PROTEIN PNS4
RICE DWARF VIRUS (RDV)
388-437
444-478
627-679


PVP4_ROTBC
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
1-35
112-146
338-379
494-518
528-653


PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN C486)
1-35
484-518
528-630


PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN UK)
1-35
112-146
338-379
484-518
528-653


PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS (STRAIN H-2)
1-35
112-146
227-274
345-379
484-518
528-653


PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
117-151
476-519


PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
1-35
236-273
337-378
483-517
530-645


PVP4_ROTH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
1-35
236-273
337-378
483-517
527-652


PVP4_ROTHD
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
1-35
112-146
237-274
338-379
484-518
531-646


PVP4_ROTHJ
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
1-35
236-273
337-378
483-517
527-652


PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN K8)
1-35
237-274
345-379
484-518
528-588


PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN KU)
1-35
337-378
483-517
527-652


PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN L26)
1-35
236-273
337-378
483-517
527-652


PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
1-35
337-378
483-517
530-645


PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13)
1-35
237-274
338-379
484-518
531-645


PVP4_ROTHR
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
1-35
236-273
337-378
483-517
527-652


PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV)
1-38
91-146
227-274


PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3)
1-35
236-273
337-378
483-517
530-644


PVP4_ROTHW
OUTER CASPID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70
1-35
237-273
344-378
483-517
527-652


PVP4_ROTP5
OUTER CASPID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
1-35
237-273
344-378
483-517
527-652


PVP4_ROTPC
OUTER CASPID PROTEIN VP4
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
112-146
484-518
528-629


PVP4_ROTPG
OUTER CASPID PROTEIN VP4
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
6-40
127-161
241-278
293-334
580-614


PVP4_ROTPY
OUTER CASPID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
1-35
236-273
337-378
483-517
530-564
569-638


PVP4_ROTRH
OUTER CASPID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN YM)
1-35
112-146
237-274
484-518
528-629


PVP4_ROTSF
OUTER CASPID PROTEIN VP4
RHESUS ROTAVIRUS
1-38
112-146
237-274
338-379
484-522
531-646


PVP4_ROTSS
OUTER CASPID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11-FEM)
1-35
484-518
528-630


PVP4_WTV
DE OUTER CASPID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11-SEM)
1-35
237-274
343-379
484-518
531-646


PVP5_AHSV4
NONSTRUCTURAL PROTEIN PN54
WOUND TUMOR VIRUS (WTV)
28-62
565-621


PVP5_BRD
OUTER CASPID PROTEIN VP5
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCI
7-58
113-229


PVP5_BTV10
OUTER CASPID PROTEIN VP5
BROADHAVEN VIRUS (BRD)
45-86
98-226


PVP5_BTV11
OUTER CASPID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 30/ISOLATE USA)
14-58
92-150
154-222
404-438


PVP5_BTV13
OUTER CASPID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
14-58
92-150
154-222
404-445


PVP5_BTV1A
OUTER CASPID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
14-58
154-222
404-438


PVP5_BTV1S
OUTER CASPID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
34-58
92-143
148-222
404-438


PVP5_BTV2A
OUTER CASPID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
14-58
92-143
148-222
404-438


PVP5_EHDV1
OUTER CASPID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
14-58
92-222
404-438


PVP5_RDV
OUTER CASPID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
24-58
92-126
163-233
291-325
399-433




(EHDV


PVP5_WTV
OUTER COAT PROTEIN P5
RICE DWARF VIRUS (RDV)
38-86
95-136
550-594


PVP61_BTV10
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS (WTV)
434-503
547-581
751-798


PVP61_MRDV
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
163-215


PVP61_NPVAC
PROBABLE NONSTRUCTURAL 41.0 KD
MAIZE ROUGH DWARF VIRUS (MRDV)
128-202



PROTEIN


PVP62_BTV10
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
29-96
351-386


PVP64_NPVOP
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
47-88
159-207
214-251


PVP67_NPVAC
MAJOR ENVELOPE GLYCOPROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
296-361
431-479



PRECURSOR
VIRUS


PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
44-78
289-364
443-477



PRECURSOR


PVP6_BTV11
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR POLYHEDROSIS VIRUS
206-281




(GMN


PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
159-211


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
159-211


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
68-102
159-211


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
12-78
163-211


PVP6_RDV
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
44-78
135-187


PVP6_WTV
STRUCTURAL PROTEIN P6
RICE DWARF VIRUS (RDV)
150-191
296-344
360-401


PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (WTV)
144-178
286-334
400-434


PVP74_NPVAC
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (STRAIN NJ)(WTV)
144-178
286-334


PVP74_NPVCF
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
387-456


PVP75_HSVSA
P74 PROTEIN
CHORISTONEURA FUMIFERANA NUCLEAR POLYHEDROSIS
385-453




VIRU


PVP79_NPVAC
PROBABLE MEMBRANE ANTIGEN 75
HERPESVIRUS SAIMIRI (STRAIN 11)
50-99
163-211
931-984


PVP7_BTV10
79 KD PROTEIN
AUTOGRAPIIA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
44-78
363-397
406-440


PVP7_BTV13
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA), (SEROTYPE
184-228


PVP7_BTV17
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
201-235


PVP7_BTV1A
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
184-228


PVP7_BTV1S
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
184-235


PVP7_BTV2A
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
184-228


PVP7_EHDV1
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
184-228


PVP7_RDV
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
16-50
134-178




(EHDV


PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
RICE DWARF VIRUS (RDV)
47-95
172-255


PVP80_NPVAC
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS (WTV)
47-84
195-243
438-493


PVP87_NPVOP
CASPID PROTEIN P80
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
7-51
99-142
156-204
221-298


PVP8_BTV10
CASPID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
80-162
410-451




VIRUS


PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
54-102
185-219


PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
54-102
185-219


PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
54-102
185-219


PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
54-102
185-219


PVP8_BTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
54-102
185-219


PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
54-102
185-219


PVP8_FOWPV
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
54-102
185-219


PVP9_RDV
STRUCTURAL PROTEIN VP8 PRECURSOR
FOWLPOX VIRUS
193-245


PVP9_WTV
NONSTRUCTURAL PROTEIN PNS9
RICE DWARF VIRUS (RDV)
13-47
186-226


PVP9_WTVNJ
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (WTV)
140-212


PVPG_BYDV1
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (STRAIN NJ)(WTV)
140-212


PVPHE_NPVAC
PUTATIVE GENOME-LINKED PROTEIN
BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PS1)(BYDV)
25-59



PRECURSOR


PVPHE_NEVOP
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
146-223


PVPR_SIVML
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
131-201
206-265




VIRUS


PVPU_HV1A2
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE)(SIV-MAC)
78-115


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2
1-38




ISOLATE


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE)(HI
4-72


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE)(HIV
5-72


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE)
4-59




(H


PVPU_HV1C4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)(HIV
4-72


PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451 ISOLATE)
3-40


PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
6-40




(HIV-


PVPU_HV1J3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE)
5-72




(HI


PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
2-50




(HIV-


PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE)(II
4-59


PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE)(HI
5-50


PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE)(HI
4-40


PVPU_HV1RH
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE)(HI
4-72


PVPU_HV1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE)(
1-39


PVPU_HV1Z2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162 ISOLATE)
4-59




(HI


PVPU_SIVCZ
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34
6-40




ISOLAT


PVPX_HV2D2
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))(CIV)
21-78


PVRNA_BSMV
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7)
42-85




(H


PVS05_ROTS1
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
40-74
857-898


PVS06_ROTBS
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN II ROTAVIRUS (STRAIN SA11)
248-287


PVS06_ROTGA
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
6-44


PVS06_ROTG1
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)(ADULT DIARRHEA ROTA
69-144


PVS06_ROTHC
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
24-58
64-103


PVS06_ROTPC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL)
9-43


PVS07_ROTBJ
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
9-43


PVS07_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
2-36
282-320


PVS07_ROTP5
NONSTRUCTURAL PROTEIN NCVP3
BOVINE ROTAVIRUS (STRAIN UK)
88-153
199-236


PVS07_ROTS1
NONSTRUCTURAL PROTEIN NCVP3
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
88-162
202-256


PVS08_ROTBU
NONSTRUCTURAL PROTEIN NCVP3
SIMIAN II ROTAVIRUS (STRAIN SA11)
88-153
199-236


PVS08_ROTS1
NONSTRUCTURAL PROTEIN NS2/VP9
BOVINE ROTAVIRUS (STRAIN UK)
2-70
75-119
160-226


PVS09_ROTB4
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN II ROTAVIRUS (STRAIN SA11)
2-46
144-212
217-255


PVS09_ROTB5
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
2-54
282-320


PVS09_ROTB6
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A5)
2-43
282-320


PVS09_ROTBA
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN 61A)
2-54
282-320


PVS09_ROTBB
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A44)
2-54
282-320


PVS09_ROTBK
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 10/STRAIN B223)
2-54
282-320


PVS09_ROTBN
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KK3)
2-54
282-320


PVS09_ROTBT
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN NCDV)
2-54
282-320


PVS09_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 1/STRAIN T449)
2-43
282-320


PVS09_ROTC7
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN UK)
2-54
282-320


PVS09_ROTEL
GLYCOPROTEIN VP7
CHICKEN ROTAVIRUS A (SEROTYPE 7/STRAIN CH2)
285-326


PVS09_ROTGA
GLYCOPROTEIN VP7
EQUINE ROTAVIRUS (STRAIN L338)
282-320


PVS09_ROTG1
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN ADRV)(ADULT DIARRHEA ROTA
43-77


PVS09_ROTH4
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN IDIR)
45-79


PVS09_ROTH9
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4)
2-43
282-320


PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE G/STRAIN RK9)
282-320


PVS09_ROTHB
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5)
282-320


PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37)
2-43
282-320


PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
282-320


PVS09_ROTHL
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126)
282-320


PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (STRAIN L26)
1-35
282-320


PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
2-43
282-320


PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO AND STRAIN D)
2-43
282-320


PVS09_ROTHR
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
282-320


PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV)
282-320


PVS09_ROTHT
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
282-320


PVS09_ROTHV
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3)
18-56
208-242
282-320


PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70)
18-56
208-242
282-320


PVS09_ROTP2
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
2-43
282-320


PVS09_ROTP3
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN AT/76)
282-320


PVS09_ROTP4
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN CRW-8)
282-320


PVS09_ROTP5
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN OSU)
2-56
208-242
282-320


PVS09_ROTP6
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
282-320


PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN TFR-41)
282-320


PVS09_ROTPK
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BEN-144)
18-56
208-242
282-320


PVS09_ROTPM
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (STRAIN K)
18-56
282-320


PVS09_ROTPY
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BMI-1)
18-56
208-242
282-320


PVS09_ROTRH
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (STRAIN YM)
1-35
282-320


PVS09_ROTS1
GLYCOPROTEIN VP7
RHESUS ROTAVIRUS
282-320


PVS10_ROTBN
GLYCOPROTEIN VP7
SIMIAN II ROTAVIRUS (STRAIN SA11)
282-320


PVS10_ROTBS
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN NCDV)
73-161


PVS10_ROTBU
MINOR OUTER CASPID PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
17-58


PVS10_ROTH2
NONSTRUCTURAL GLYCOPROTEIN NCVP5
BOVINE ROTAVIRUS (STRAIN UK)
73-161


PSV10_ROTH7
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A28)
73-162


PVS10_ROTH8
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/CLONE 2)
73-162


PVS10_ROTHC
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (STRAIN A64/CLONE 6)
73-162


PVS10_ROTHW
MINOR OUTER CASPID PROTEIN
HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL)
121-158


PVS10_ROTS1
NONSTRUCTURAL GLYCOPROTEIN NCVP5
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
73-136


PVS11_ROTGA
NONSTRUCTURAL GLYCOPROTEIN NCVP5
SIMIAN II ROTAVIRUS (STRAIN SA11)
73-162


PVS11_ROTG1
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)(ADULT DIARRHEA ROTA
24-65
96-130


PVS11_ROTH5
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
9-68


PVS11_ROTH6
MINOR OUTER CASPID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
100-145


PVS11_ROTHB
MINOR OUTER CASPID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
107-144


PVS11_ROTHD
MINOR OUTER CASPID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37)
107-144


PVS11_ROTHW
MINOR OUTER CASPID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
111-145


PVS11_ROTS1
MINOR OUTER CASPID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
111-145


PVS48_TBRVC
MINOR OUTER CASPID PROTEIN
SIMIAN II ROTAVIRUS (STRAIN SA1)
111-145


PVSH_MUMP1
SATELLITE RNA 48 KD PROTEIN
TOMATO BLACK RING VIRUS (STRAIN C)(TBRV)
217-265


PVSH_MUMP2
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN SBL-1), AND MUMPS VIRUS (STRAIN
9-46




SBL


PVSH_MUMP4
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 2), AND (STRAIN EDINGB
13-47


PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 4)
13-47


PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
13-51


PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
13-52


PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
9-46


PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
9-46


PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
9-51


PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
13-55


PVSH_MUMPT
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
17-51


PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN TAKAHASHI)
13-47


PVS11_REOVD
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN URABE VACCINE AM9)
13-47


PVS11_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 3/STRAIN DEARING)
8-122
127-175
222-259


PVS11_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN DS/JONES)
1-178


PVS12_REOVD
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
3-107
112-198


PVS12_REOVL
SIGMA 2 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
350-384


PVS1S_REOVD
SIGMA 2 PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
350-384


PVS1S_REOVJ
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
85-119


PVST2_HEVBU
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 2/STRAIN DS/JONES)
7-45


PVST2_HEVME
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS B VIRUS (STRAIN BURMA)(HEV)
318-352


PVST2_HEVMY
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS B VIRUS (STRAIN MEXICO)(HEV)
317-351


PVST2_HEVPA
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS B VIRUS (STRAIN MYANMAR)(HEV)
318-352


PVST2_HEVRH
STRUCTURAL PROTEIN 2 PRECURSOR
HEPATITIS B VIRUS (STRAIN PAKISTAN)(HEV)
318-352


PVT3A_CAPV1
STRUCTURAL PROTEIN 2
HEPATITIS B VIRUS (ISOLATE RHESUS)(HEV)
186-220


PVT4_CAPV1
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
120-158


PVT4_CAPVK
T4 PROTEIN
CAPRIPOXVIRUS (STRAIN INS-1)
86-120


PVTER_EBV
T4 PROTEIN
CAPRIPOXVIRUS (STRAIN KS-1)
86-120


PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
235-290
595-629


PVTER_HSV6U
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451
617-658


PVTER_HSVEB
PROBABLE DNA PACKAGING PROTEIN
HERPES SINIPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
468-502


PVTER_HSV11
PROBABLE DNA PACKAGING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1)
11-45


PVTER_HSVSA
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
98-136
698-744


PVTER_VZVD
PROBABLE DNA PACKAGING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
226-267


PVV_P14HA
PROBABLE DNA PACKAGING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)(VZV)
588-622


PVY1_SEND6
V PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)(PIV-4A)
4-38


PY101_SSV1
Y1 PROTEIN
SENDAI VIRUS (STRAIN 6/94)
104-138


PY108_SSV1
HYPOTHETICAL 10.1 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
16-80


PY110_SSV1
HYPOTHETICAL 10.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
4-65


PY119_SSV1
HYPOTHETICAL 11.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
55-59


PY11K_TYDVA
HYPOTHETICAL 11.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
30-96


PY12K_PCVC6
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA)(TYDV)
53-87


PY12K_PCVF9
HYPOTHETICAL 12.2 KD PROTEIN IN COAT
FELINE CALICIVIRUS (STRAIN CF1/68 FIV)(FCV)
4-38



PROTEIN


PY12K_RHDV
HYPOTHETICAL 12.1 KD PROTEIN IN COAT
FELINE CALICIVIRUS (STRAIN F9)(FCV)
4-38



PROTEIN


PY12K_RHDV3
HYPOTHETICAL 12.7 KD PROTEIN IN COAT
RABBIT HEMORRHAGIC DISEASE VIRUS (RHDV)
13-50



PROTEI


PY13K_CLVK
HYPOTHETICAL 12.7 KD PROTEIN IN COAT
RABBIT HEMORRHAGIC DISEASE VIRUS (STRAIN V-351)(RHDV)
13-50



PROTEIN


PY13K_CLVN
HYPOTHETICAL 13.1 KD PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
40-77


PY13K_NPVOP
HYPOTHETICAL 13.1 KD PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
43-77


PY13K_SSV1
HYPOTHETICAL 14.5 KD PROTEIN IN 39 KD
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
16-67



PROTEIN
VIRUS


PY14K_SSV1
HYPOTHETICAL 13.2 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
2-36
62-96


PY168_ADE02
HYPOTlIETICAL 13.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
5-39


PY16K_SSV1
HYPOTHETICAL PROTEIN C-168
HUMAN ADENOVIRUS TYPE 2
119-166


PY17K_SSV1
HYPOTHETICAL 15.6 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
1-35
77-111


PY18K_SSV1
HYPOTHETICAL 17.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
1-45
119-153


PY20K_SSV1
HYPOTHETICAL 18.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
102-136


PY28K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
73-107


PY2_SOCMV
HYPOTHETICAL 28.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
127-180


PY31K_SSV1
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
117-154


PY32K_SSV1
HYPOTHETICAL 31.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
7-97
100-141


PY38K_NPVAC
HYPOTHETICAL 31.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
230-278


PY3_SOCMV
HYPOTHETICAL 37.7 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
133-241


PY5K9_SSV1
HYPOTHETICAL PROTEIN 3
SOYBEAN CHLOROTIC MOTTLE VIRUS
115-149


PY7_SOCMV
HYPOTHETICAL 5.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
1-51


PY85K_SSV1
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
56-94


PY8_SOCMV
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
81-125
503-537
346-587
658-700


PYB01_FOWPM
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
46-83


PYB04_FOWPM
HYPOTHETICAL BAMHI-ORF1 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
74-115
184-221


PYB05_FOWPM
HYPOTHETICAL BAMHI-ORF4 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
29-70


PYB06_FOWPM
HYPOTHETICAL BAMHI-ORF5 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
3-37
61-95


PYB07_FOWPM
HYPOTHETICAL BAMHI-ORF6 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
115-149


PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF7 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
344-378


PYV12_FOWPM
HYPOTHETICAL BAMHI-ORF10 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
162-233


PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF12 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
4-47
117-153


PYBL2_EBV
HYPOTHETICAL BAMHI-ORF13 PROTEIN
FOWLPOX VIRUS (ISOLATGE HP-438[MUNICH])
122-163


PYDH1_HSVS7
HYPOTHETICAL BBLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
458-506


PYF30_FOWP1
HYPOTHETICAL 24.1 KD PROTEIN IN DHFR
HERPESVIRUS SAIMIRI (STRAIN 484-77)
147-188



3′REGION


PYGA1_HSVMB
HYPOTHETICAL 30.9 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
160-204


PYGA1_HSVMM
HYPOTHETICAL 23.6 KD PROTEIN IN
MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1)(MDHV)
176-211



GLYCOPROTEI


PYH22_VACCV
HYPOTHETICAL 23.6 KD PROTEIN IN
MAREK'S DISEASE HERPESVIRUS (STRAIN MD5)(MDHV)
176-211



GLYCOPROTEI


PYHR3_VACCV
HYPOTHETICAL 21.7 KD HINDIII-C PROTEIN
VACCINIA VIRUS (STRAIN WR)
34-78
95-139


PYKR4_EBV
HYPOTHETICAL HOST RANGE 27.4 KD
VACCINIA VIRUS (STRAIN WR)
24-58
181-222



PROTEIN


PYL15_ADE41
HYPOTHETICAL BKRF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
16-58


PYLR2_EBV
HYPOTHETICAL 12.4 KD PROTEIN IN 33 KD
HUMAN ADENOVIRUS TYPE 41
39-81



PROTEIN


PYOR1_COYMV
HYPOTHETICAL BLRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPES VIRUS 4)
64-125


PYOR2_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS (COYMV)
94-147


PYOR2_LELV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS (COYMV)
33-77


PYOR3_TTV1
HYPOTHETICAL 28.4 KD PROTEIN
LELYSTAD VIRUS (LV)
100-134


PYOR5_ADEG1
HYPOTHETICAL 6.9 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
14-54


PYORA_TTV1
HYPOTHETICAL 31.3 KD PROTEIN
AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)(FOWL
70-127




ADENOVIRU


PYORD_TTV1
HYPOTHETICAL 8.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
21-67


PYORE_TTV1
HYPOTHETICAL 15.4 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
6-51
89-130


PYORL_TTV1
HYPOTHETICAL 15.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV I)
78-122


PYORQ_TTV1
HYPOTHETICAL 26.8 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
1-45


PYORT_TTV1
HYPOTHETICAL 7.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
1-43


PYORW_TTV1
HYPOTHETICAL 38.7 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
4-38
281-315


PYP12_RTBV
HYPOTHETICAL 12.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)(TTV1)
4-89


PVP12_RTBVP
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
33-72


PYP24_RTBV
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)
33-72




(RTB


PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
51-101
106-157


PYP46_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)(RT
51-101
106-157


PYP46_RTBVP
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
49-111
197-231


PYP63_NPVAC
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)(RT
49-111
197-231


PYP7A_TNVA
HYPOTHETICAL PROTEIN IN P6.5 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
32-73


PYPOH_NPVAC
HYPOTHETICAL P7A PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A)(TNV)
1-65


PYPOL_IPNVJ
HYPOTHETICAL 23.6 KD PROTEIN IN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS(
116-153



POLYHEDRIN 5


PYQ1_AMEPV
HYPOTHETICAL 17.3 KD PROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE
25-66




JASPER)


PYQ3_AMEPV
HYPOTHETICAL 7.6 KD PROTEIN IN TK
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
9-61



5′REGION


PYRF2_HSV6G
HYPOTHETICAL PROTEIN IN TK 3′REGION
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
1-57
62-96
149-183


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
193-224


PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
134-175


PYRP2_RV6
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
252-286
404-442


PYRR1_EBV
REPETITIVE PROTEIN ORF2
CHILO IRIDESCENT VIRUS (CIV)(INSECT IRIDESCENT VIRUS
1-45




TYP


PYSR1_EBV
HYPOTHETICAL BRAF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
96-130


PYTR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
98-177


PYUB2_NPVOP
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)(HUMAN HERPESVIRUS 4)
390-424


PYVAC_VACCC
HYPOTHETICAL 24.0 KD PROTEIN IN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
25-69
170-204



UBIQUITIN 3′RE
VIRUS


PYVAG_VACCC
HYPOTHETICAL 14.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-63


PYVAH_VACCC
HYPOTHETICAL 9.3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
3-37


PYVAN_VACCC
HYPOTHETICAL 14.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
78-112


PYVBH_VACCC
HYPOTHETICAL 7.9 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-57


PYVCC_VACCC
HYPOTHETICAL 7.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
5-39


PYVDB_VACCC
HYPOTHETICAL 9.2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-48


PYVDB_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-80


PYVDC_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
46-80


PYVGB_VACCC
HYPOTHETICAL 7.3 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
7-41


PYVHA_VACCC
HYPOTHETICAL 8.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-51



HYPOTHETICAL 8.1 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
9-53
















TABLE VI







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY


FOR ALL VIRAL (NON-BACTERIOPHAGE) PROTEINS


















PCGENE
107 × 178 × 4
All Viruses (no bacteriophages)
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA


FILE NAME
PROTEIN
VIRUS
1
2
3
4
5
6
7
8
9





P194K_TRVSY
POT 195 KD PRO
TOBACCO RATTLE VIRUS (STRAIN SYM)
387-414
1087-
1142-












1114
1169


PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVIT
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133


PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133


PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
72-106


PATI1_VACCV
94 KD A-TYPE INCLUSION PRO
VACCINIA VIRUS (STRAIN WR)
14-56
67-94
424-472
570-625


PATI1_VARV
81 KD A-TYPE INCLUSION PRO
VARIOLA VIRUS
67-94
425-504
571-605


PATI2_HSVII
ALPHA TRANS-IND FACTOR 78 KD PRO
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
308-335


PAT12_HSVIF
ALPHA TRANS-IND FACTOR 77 KD PRO
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
308-335


PATI2_HSVEB
ALPHA TRANS-IND FACTOR 82 KD PRO
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
294-321


PATIN_HSVEB
ALPHA TRANS-IND PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
255-289


PAT1_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
14-56
67-94
426-498
572-620
837-841
934-990
1234-











1261


PBZLF_EBV
BZLF1 TRANS-ACTIVATOR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
193-220


PCAHH_VACCC
CELL SURFACE-BINDING PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
84-111
117-144


PCAHH_VACCV
CELL SURFACE-BINDING PROTEIN
VACCINIA VIRUS (STRAIN WR)
84-111
117-144


PCAHH_VARV
CELL SURFACE-BINDING PROTEIN
VARIOLA VIRUS
84-111
117-144


PCELF_HSVEB
CELL FUSION PROTEIN PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAINS AB4P and Ky A)
312-339


PCGH2_HSVSA
CYCLIN HOMOLOG
HERPES VIRUS SAIMIRI (STRAIN 11)
127-154


PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
159-186


PCOA2_BFDV
COAT PROTEIN VP2
BUDGERIGAR FLEDGLING DISEASE VIRUS
160-187


PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
49-76


PCOA2_POVJC
COAT PROTEIN VP2
POLYOMAVIRUS JC
37-64


PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
170-204


PCOA2_POVMK
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN KILHAM)
22-49


PCOA2_SV40
COAT PROTEIN VP2
SIMIAN VIRUS 40
178-205


PCOA3_AAV2
PROBABLE COAT PROTEIN 3
ADENO-ASSOCIATED VIRUS 2
120-147


PCOA3_TTV1
COAT PROTEIN TP3
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
3-30


PCOAT_ADVG
COAT PROTEIN VP1
ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G)
194-221


PCOAT_BLRV
COAT PROTEIN
BEAN LEAFROLL VIRUS
96-123


PCOAT_CAMVC
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
63-90
193-220
461-488


PCOAT_CAMVD
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
64-91
194-221


PCOAT_CAMVE
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
63-90
193-220


PCOAT_CAMVN
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
63-90
192-219
461-488


PCOAT_CAMVS
COAT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
64-91
194-221


PCOAT_CARMV
COAT PROTEIN
CARNATION MOTTLE VIRUS
16-43


PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
41-86


PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
328-362


PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
62-89


PCOAT_CYMV
COAT PROTEIN
CLOVER YELLOW MOSAIC VIRUS
170-200


PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN CF1/68 FIV)
566-600


PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
516-543
566-600


PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN F9)
519-546
569-603


PCOAT_FMVD
PROBABLE COAT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
220-247
358-385


PCOAT_LSV
COAT PROTEIN
LILY SYMPTOMLESS VIRUS
32-700
246-273


PCOAT_MISV
COAT PROTEIN
MISCANTHUS STREAK VIRUS
139-166


PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
106-133


PCOAT_PAVHB
PROBABLE COAT PROTEIN VP1
HUMAN PARVOVIRUS B19
524-551
569-596


PCOAT_POPMV
COAT PROTEIN
POPLAR MOSAIC VIRUS (ISOLATE ATCC PV275)
46-73


PCOAT_SOCMV
COAT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
128-162


PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
21-48


PCOAT_TAV
COAT PROTEIN
TOMATO ASPERMY VIRUS
23-50


PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN BS-3)
3-30
41-68


PCOAT_TBSVC
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
97-134


PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
232-259


PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS
104-131


PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS (VULGARE)
104-131


PCOAT_TMVCO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN COWPEA)
78-132


PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN DAHLEMENSE)
104-131


PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN ER)
104-131


PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN O and KOKUBU)
104-131


PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN OM)
104-131


PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
104-131


PCOAT_TNVA
COAT PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A)
90-117


PCOAT_TRVPS
COAT PROTEIN
TOBACCO RATTLE VIRUS (STRAINS PSG and PLB)
118-145


PCOAT_TYDVA
COAT PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA)
10-37


PCOAT_TYMV
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS
41-68


PCOAT_TYMVA
COAT PROTEIN
TURNIP YELLOW MOSAIC VIRUS (AUSTRALIAN ISOLATE)
41-68


PDNB2_ADE07
EARLY E2A DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 7
46-73


PDNB1_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
977-
1041-





1004
1068


PDNB1_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
437-464


PDNB1_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
333-368
512-539


PDNB1_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
584-618


PDNB1_POVJC
DNA-BINDING PROTEIN
POLYOMAVIRUS JC
2-29


PDNB1_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN)
435-462
532-559


PDNL1_VACCC
DNA LIGASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
104-131
172-199
358-385


PDNL1_VACCV
DNA LIGASE
VACCINIA VIRUS (STRAIN WR)
104-131
172-199
358-385


PDNL1_VARV
DNA LIGASE
VARIOLA VIRUS
104-131
172-199
358-385


PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
403-431


PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
23-64
202-240


PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
338-365


PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
338-365


PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
17-51
370-416
621-655
772-799


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-780


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK
5-39




ISOLATE S5)


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
5-39


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK
5-39
304-331




ISOLATES 31)


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
271-325


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39


PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
456-483




PHILIPPINO/TFDW294)


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
443-470


PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
328-366
710-737


PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI (STRAIN 11)
625-652


PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
598-643




VIRUS


PDPOL_NPVLD
DNA POLYMERASE
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
357-384




POLYHEDROSIS VIRUS


PDPOL_VACCC
DNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
770-797


PDPOL_VACCV
DNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
770-797


PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
769-796


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
285-326


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
212-242
290-331


PDPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
211-241
289-330


PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
212-242
290-331


PDTXH_CORBE
DIPHTH TOXIN HOMOLOG CRM228 PREC
CORYNEPHAGE BETA
516-533


PDTX_CORBE
DIPHTHERIA TOXIN PRECURSOR
CORYNEPHAGE BETA
523-560


PDTX_COROM
DIPHTHERIA TOXIN PRECURSOR
CORYNEPHAGE OMEGA
516-533


PDUT_HSVE4
DEOXYU 5′-TRIPHOSPH NUCHYDROLASE
EQUINE HERPES VIRUS TYPE 4 (STRAIN 1942)
90-117


PDUT_HSVSA
DEOXYU 5′-TRIPHOSPH NUCHYDROLASE
HERPES VIRUS SAIMIRI (STRAIN 11)
179-213


PEIBL_ADE07
EIB PROTEIN, LARGE T-ANTIGEN
HUMAN ADENOVIRUS TYPE 7
126-153


PEIBL_ADE40
EIB PROTEIN, LARGE T-ANTIGEN
HUMAN ADENOVIRUS TYPE 40
136-163


PEIBS_ADE12
EIB PROTEIN, SMALL T-ANTIGEN
HUMAN ADENOVIRUS TYPE 12
3-30


PE1BS_ADEM1
EIB PROTEIN, SMALL T-ANTIGEN
MOUSE ADENOVIRUS TYPE 1
122-173


PE314_ADE02
EARLY E3B 14 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
2-29


PE314_ADE07
EARLY E3 15.3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
21-48


PE320_ADE03
EARLY E3 20.1 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 3
5-32
70-100


PE320_ADE35
EARLY E3 20.3 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
70-107


PE322_ADE35
EARLY E3 20.6 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 35
125-161


PE3GL_ADEM1
EARLY E3 17.7 KD GLYCOPROTEIN
MOUSE ADENOVIRUS TYPE 1
38-66


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
55-82


PEFTI_VARV
EARLY TRANS FACTOR 70 KD SUBUNIT
VARIOLA VIRUS
307-341
470-497


PENV_AVIRE
ENV POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
420-468


PENV_AVISN
ENV POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
6-33
426-474


PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
395-452


PENV_BIV06
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106)
17-44
544-603
631-695


PENV_B1V27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127)
17-44
573-632
660-724


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE FLK)
304-377


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE)
304-377


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE VDM)
304-377


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB285)
311-377


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB59)
304-377


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1)
304-377


PENV_CAEVG
ENV POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN G63)
165-192


PENV_EIAV1
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-1)
668-712


PENV_EIAV2
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-2)
668-695


PENV_EIAV3
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-3)
668-712


PENV_EIAV5
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE P3.2-5)
669-696


PENV_EIAV9
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
668-712


PENV_EIAVC
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
668-712


PENV_EIAVW
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (STRAIN WSU5)
668-712


PENV_EIAVY
ENV POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING)
668-712


PENV_FENV1
ENV POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
33-60
517-544


PENV_FIVPE
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA)
650-680
722-749


PENV_FIVSD
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE SAN DIEGO)
639-668
720-747


PENV_FIVT2
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2)
640-679
721-748


PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
509-538


PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1)
490-519


PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1)
510-539


PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
487-516


PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS
14-41
318-355
866-893


PENV_FSVGA
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN)
510-539


PENV_FSVGB
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN GA)
496-519


PENV_FSYSM
ENV POLYPROTEIN
FELINE SARCOMA VIRUS (STRAIN SM)
493-522


PENV_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
176-203
523-564


PENV_HTL1A
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATR)
342-376


PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I (CARIBBEAN
342-376




ISOLATE)


PENV_HTL1M
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I (ISOLATE MT-2)
342-376


PENV_HTLV2
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
336-370


PENV_HV1A2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2
544-592
630-682
790-825




ISOLATE)


PENV_HV1B1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BII10 ISOLATE)
545-594
631-683
791-818


PENV_HV1B8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BII8 ISOLATE)
540-589
626-678
786-813


PENV_HV1BN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN
267-294
338-365
562-590
628-639
787-815




ISOLATE)


PENV_HV1BR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE)
550-599
636-688
796-823


PENV_HV1C4
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (CDC-451
397-424
557-606
643-695
803-835




ISOLATE)


PENV_HV1EL
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
255-296
386-413
543-391
628-680


PENV_HV1H2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2
545-594
631-683
791-818




ISOLATE)


PENV_HV1H3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB3
545-594
632-683
791-818




ISOLATE)


PENV_HV1J3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
350-377
556-605
642-694
802-829


PENV_HV1JR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF
336-363
622-675
783-811




ISOLATE)


PENV_HV1KB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN
274-301
555-596
637-677
776-824




KB-1-GP32)


PENV_HV1MA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL
547-595
633-707
794-826




ISOLATE)


PENV_HV1MF
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MFA
543-592
629-681
789-816




ISOLATE)


PENV_HV1MN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
343-370
567-595
632-684
791-819


PENV_HV1N5
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5
326-360




ISOLATE)


PENV_HV1ND
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK
249-290
536-583
621-673
783-813




ISOLATE)


PENV_HVIOY
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE)
544-593
630-704
789-820


PENV_HVIPV
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22
545-594
631-683
791-818




ISOLATE)


PENV_HV1RH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT
280-307
351-378
554-602
640-692
800-832




ISOLATE)


PENV_HV1S1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162
333-363
536-585
622-674
782-809




ISOLATE)


PENV_HV1S3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF33
541-589
627-679
787-815




ISOLATE)


PENV_HV1SC
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SC ISOLATE)
338-365
545-593
631-683


PENV_HV1W1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ1
338-365
345-593
631-683
791-818




ISOLATE)


PENV_HV1W2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (WMJ2
334-361
336-584
622-674
782-809




ISOLATE)


PENV_HV1Z2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34
255-296
542-591
628-680
790-820




ISOLATE)


PENV_HV1Z3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 3
251-292




ISOLATE)


PENV_HV1Z6
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6
256-297
343-593
630-682
792-822




ISOLATE)


PENV_HV1Z8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z-84
266-307
573-601
634-678
797-828




ISOLATE)


PENV_HV1ZH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE IIZJ21
545-394
627-666
791-823




ISOLATE)


PENV_HV2BE
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
61-88
532-591
621-648
653-697




BEN)


PENV_HV2CA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
534-591
623-650
655-699




CAM2)


PENV_HV2D1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
61-88
523-550
555-582
644-688




D194)


PENV_HV2G1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
60-87
524-551
556-583
613-640
645-693




GHANA-1)


PENV_HV2NZ
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
61-88
524-551
556-383
613-640
662-689




NIH-Z)


PENV_HV2RO
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
58-85
533-592
622-698




ROD)


PENV_HV2S2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
442-476
527-554
559-596
648-682




ST/24 IC#2)


PENV_HV2SB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
557-584
614-673




SBLISY)


PENV_HV2ST
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST)
442-476
527-534
359-586
648-692


PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS
473-512


PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS
488-515




(ISOLATE CI-3)


PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
517-544


PENV_MLVCB
ENV POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA VIRUS
510-539


PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
523-553


PENV_MLVFF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
523-553


PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211)
523-553


PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA VIRUS
510-540


PENV_MLVK1
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
40-81


PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
502-543


PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
497-538


PENV_MLVRK
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN)
497-538


PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
458-485
562-589


PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
458-485
562-589


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
422-470


PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
57-84


PENV_OMVVS
ENV POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
42-69
196-223
780-807


PENV_RMCFV
ENV POLYPROTEIN
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
487-517


PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
14-41
866-901


PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
18-45
319-357
673-700
863-898


PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
269-310
561-588
592-619
652-679
697-724


PENV_STVAG
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
270-301
566-593
597-624
658-685
703-730


PENV_SIVAI
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE
257-291
336-372
548-603
634-708




AGM/CLONE GRI-I)


PENV_SIVAT
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
3-30
268-298
390-617
651-678


PENV_SIVCZ
ENV POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
160-187
253-289
336-366
526-584
627-654


PENV_SIVGB
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
8-35
158-185
589-650
784-816


PENV_SIVM1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)
120-150
550-609
671-715


PENV_SIVM2
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM251 ISOLATE)
156-215
277-289


PENV_SIVMK
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
553-608


PENV_SIVML
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE)
549-608


PENV_SIVS4
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE)
281-308
553-612
642-669
691-718


PENV_SIVSP
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE)
286-313
554-595
646-722


PENV_SMRVH
ENV POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
400-462


PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
409-471


PENV_VILV
ENV POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
22-62
773-800


PENV_VILV1
ENV POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS1)
22-62
780-807


PENV_VILV2
ENV POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS2)
22-62
782-809


PETF1_FOWP1
EARLY TRANS FACTOR 70 KD SUBUNIT
FOWLPOX VIRUS (STRAIN FP-1)
190-224


PETF1_SFVKA
EARLY TRANS FACTOR 70 KD SUBUNIT
SHOPE FIBROMA VIRUS (STRAIN KASZA)
306-340
469-496
550-587


PETF1_VACCC
EARLY TRANS FACTOR 70 KD SUBUNIT
VACCINIA VIRUS (STRAIN COPENHAGEN)
307-341
470-497


PETF1_VACCV
EARLY TRANS FACTOR 70 KD SUBUNIT
VACCINIA VIRUS (STRAIN WR)
307-341
470-497


PETF2_VACCC
EARLY TRANSCRIPTION FACTOR 82
VACCINIA VIRUS (STRAIN COPENHAGEN)
66-97
174-210
302-332


PETF2_VARV
EARLY TRANSCRIPTION FACTOR 82
VARIOLA VIRUS
66-97
174-210
302-332


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-139


PFIB2_ADE40
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
179-237


PFIB2_ADE41
41.4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
178-216


PFIBP_ADE02
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 2
308-335


PFIBP_ADE40
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
324-351
446-473


PFIBP_ADE41
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
339-366
461-488


PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3
118-145
164-191


PFIBP_ADEM1
FIBER PROTEIN
MOUSE ADENOVIRUS TYPE 1
275-305
325-352


PFOSX_MSVFR
V-FOS/FOX TRANSFORMING PROTEIN
FBR MURINE OSTEOSARCOMA VIRUS
138-169


PFOS_AVINK
P55-V-FOS TRANSFORMING PROTEIN
AVIAN RETROVIRUS NK24
116-147


PFOS_MSVFB
P55-V-FOS TRANSFORMING PROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
162-193


PGAG_AVISN
GAG POLYPROTEIN
AVIAN SPLEEN NECROSIS VIRUS
270-297


PGAG_EIAVY
GAG POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING)
144-171


PGAG_FOAMV
GAG POLYPROTEIN
HUMAN SPUMARETROVIRUS
621-648


PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
396-442
447-474


PGAG_HVIA2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2
91-118




ISOLATE)


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
91-118


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
87-118


PGAG_HV2BE
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
88-115




BEN)


PGAG_HV2D1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
88-115




D194)


PGAG_HV2NZ
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
88-115




NIH-Z)


PGAG_HV2ST
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST)
88-115


PGAG_IPHA
RETROVIRUS-RELATED GAG POLYPROTEI
HAMSTER INTRACISTERNAL A-PARTICLE
270-297


PGAG_IPMA
RETROVIRUS-RELATED GAG POLYPROTEI
MOUSE INTRACISTERNAL A-PARTICLE
33-60
69-103
232-259


PGAG_IPMAE
RETROVIRUS-RELATED GAG POLYPROTEI
MOUSE INTRACISTERNAL A-PARTICLE
96-130


PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
84-151
156-187


PGAG_MMTVC
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
84-116


PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
84-151
156-187


PGAG_MPMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
222-260


PGAG_SCVLA
MAJOR COAT PROTEIN
SACCHAROMYCES CEREVISIAE VIRUS L-A
491-531
624-651


PGAG_SIVAI
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE
473-507




GRI-1)


PGAG_SIVMK
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
88-115


PGAG_SIVMS
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (STM ISOLATE)
88-115


PGAG_SIVS4
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE)
88-115


PGAG_SIVSP
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (PB1/BC13 ISOLATE)
88-115


PGAG_SMSAV
GAG POLYPROTEIN
SIMIAN SARCOMA VIRUS
397-443


PGAG_SRV1
GAG POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
223-261


PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
184-211
321-348


PHELI_HSVSA
PROBABLE HELICASE
HERPES VIRUS SAIMIRI (STRAIN 11)
418-449


PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
490-517
701-728


PHEMA_CVBF
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
208-242


PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
208-242


PHEMA_CVBM
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS STRAIN MEBUS)
208-242


PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
208-242


PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN OC43)
208-242


PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/AICHI/2/68)
387-453


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
24-51
371-437


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/BUDGERIGAR/HOKKAIDO/I/77)


PHEMA_IACAO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82)
9-36


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/ALABAMA/1/75)
381-451


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
31-58
382-441
494-528


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
396-426




A/CHICKEN/PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
396-426




A/CHICKEN/PENNSYLVANIA/1370/83)


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/VICTORIA/1/85)
119-146
384-443


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76)
381-451


PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
423-453
499-543


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/78/76)
387-453


PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/35/76)
29-56
418-478


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/DUCK/CZECHOSLOVAKIA/56)


PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
21-55
402-453
506-533


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOOKAIDO/5/77)
371-437


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
371-437


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/33/80)
371-437


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/7/82)
371-437


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/21/82)
371-437


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/9/85)
371-437


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/10/85)
371-437


PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/IRELAND/113/83)
415-445


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/546/76)
21-56


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74)
387-453


PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53)
31-58


PHEMA_LADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/NEW YORK/12/78)
21-55


PHEMA_IADNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/NEW
381-451




ZEALAND/31/76)


PHEMA_IADU1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/60)
21-55


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
387-453


PHEMA_IAEN6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/ENGLAND/878/69)
24-51


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77)
40-67
387-453


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
177-221
384-442




VIRUS/ROSTOCK/34)


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GREY
381-451




TEAL/AUSTRALIA/2/79)


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
505-532


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84)
504-531


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/ALGIERS/72)
386-452


PHEMA_IAHAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/HARBIN/1/88)
29-56


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/63)
29-56
194-221
388-457


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/CAMBRIDGE/1/73)
29-56
194-221
388-457


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/C DETROIT/1/64)
29-56
194-221
388-457


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/DETROIT/1/64)
29-56
194-221
388-457


PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
386-452




A/EQUINE/FONTAINEBLEAU/76)


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/86)
386-452


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/87)
386-452


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/LEXINGTON/1/66)
29-56
194-221
388-457


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
29-56
194-221
388-457


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63)
386-452


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW MARKET/76)
386-452


PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/NEW
29-56
194-221
388-457




MARKET/1/77)


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
29-56
194-221
388-457


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/ROMANIA/80)
386-452


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SANTIAGO/1/85)
386-452


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SAO PAULO/1/76)
29-56
194-221
388-457


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN)
29-56
194-221
388-457




A/EQUINE/SWITZERLAND/137/72


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
386-452


PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/TOKYO/71)
386-455


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/URUGAY/1/63)
386-452


PHEMA_IAJAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57)
196-223


PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
29-56
425-478


PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
29-56
425-478


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
380-450




A/MALLARD/ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
385-455




A/MALLARD/ASTRAKHAN/263/82)


PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW
387-453




YORK/6874/78)


PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71)
40-67
387-453


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/102/72)
40-67
387-453


PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86)
24-51
371-437


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
31-58
382-441


PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
387-453


PHEMA_IAP1L
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/PILOT
505-534




WHALE/MAINE/328/84)


PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
29-56
425-478


PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/QU/7/70)
24-51


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
381-451




JERSEY/47/85)


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/SEAL/MASSACHUSETTS/133/82)


PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
28-56
160-187
506-547




A/SHEARWATER/AUSTRALIA/72)


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
119-146
384-443




A/STARLING/VICTORIA/5156/85)


PHEMA_IATAI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TAIWAN/1/86)
29-56


PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/IRELAND/1378/83)
415-445


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
381-451




A/TURKEY/MINNESOTA/833/80)


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/7732/66)
507-534


PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/6118/68)
424-454
493-539


PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
32-62
194-221
381-422


PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/WISCONSIN/1/66)
419-449
500-536


PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75)
21-55


PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
40-67
387-453


PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
29-56
425-478


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
41-68
388-454


PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
424-477


PHEMA_IAXIA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/XIANFENG/3/89)
29-56


PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/COLORADO/1/77)
40-67
387-453


PHEMA_LAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78)
371-437


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
371-437


PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/INDIANA/1726/88)
418-478
506-547


PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/NEW JERSEY/1176)
418-478
506-547


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/UKKEL/1/84)
387-453


PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BEUING/1/87)
400-431
439-483


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BONN/43)
390-421
429-473


PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82)
398-429
437-481


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
391-418
429-473


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/LEE/40)
399-430
438-482


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
389-420
428-472


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86)
393-424
432-476


PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
398-429
437-481


PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
398-429
437-481


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/USSR/100/83)
391-422
430-474


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85)
393-424
432-476


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87)
400-431
439-483


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
495-571


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83)
483-559


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54)
483-559


PHEMA_INCHY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83)
482-558


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66)
496-572


PHEMA_INCKY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/KYOTO/41/82)
482-558


PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80)
482-558


PHEMA_INCNA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/NARA/82)
482-558


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81)
483-559


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81)
483-559


PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82)
483-559


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47)
483-559


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81)
483-559


PHEMA_NDVA
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
64-91




VICTORIA/32)


PHEMA_NDVB
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
64-91


PHEMA_NDVD
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN D26/76)
64-91


PHEMA_NDVH
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47)
64-91


PHEMA_NDVI
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)
64-91


PHEMA_NDVM
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)
64-91


PHEMA_NDVQ
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)
64-91


PHEMA_NDVTG
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48)
64-91


PHEMA_NDVU
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
64-91


PHEMA_PHODV
HEMAGGLUTININ-NEURAMINIDASE
PHOCINE DISTEMPER VIRUS
39-66
46-73


PHEMA_PI1HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
79-110
366-393




WASHINGTON/1957)


PHEMA_PI3B
HEMAGGLUTININ-NEURAMINIDASE
BOVINE PARAINFLUENZA 3 VIRUS
66-93


PHEMA_PI3H4
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
27-61


PHEMA_PI3HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN AUS/124854/74)
27-61


PHEMA_PI3HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/545/80)
27-76


PHEMA_PI3HU
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/9305/82)
23-70


PHEMA_PI3HV
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/1267/83)
27-61


PHEMA_PI3HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/641/79)
27-61


PHEMA_PI3HX
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/1511/73)
27-61


PHEMA_RACV1
HEMAGGLUTININ PRECURSOR
RACCOON POXVIRUS
166-214
256-283


PHEMA_SEND5
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
79-106


PHEMA_SENDF
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN FUSHIMI)
79-106


PHEMA_SENDH
HEMAGGLUTININ-NEURAMINIDASE
SENADI VIRUS (STRAIN HARRIS)
79-106


PHEMA_SENDJ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HVJ)
79-106


PHEMA_SENDZ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z)
79-106


PHEMA_SV41
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 41
22-52
394-421


PHEMA_VACCC
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
119-146
175-202
216-243


PHEMA_VACCI
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN IHD-J)
109-146
175-202
216-243


PHEMA_VACCT
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN TIAN TAN)
119-146
175-202
216-243


PHEMA_VACCV
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN WR)
109-146
175-202
215-242


PHEMA_VARV
HEMAGGLUTININ PRESURSOR
VARIOLA VIRUS
111-148
177-211
214-244


PHEX9_ADE02
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 2
100-134


PHEX9_ADE05
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 5
100-134


PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 3 and 7
97-127


PHEX_ADE02
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 2
146-173
359-386
433-460


PHEX_ADE05
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 5
348-375


PHEX-ADE40
HEXON PROTEIN
HUMAN ADENOVIRUS TYPE 40
396-423


PHEX_ADEB3
HEXON PROTEIN
BOVINE ADENOVIRUS TYPE 3
305-338


PHI38_COWPX
HEMORRHAGE-INDUCING 38 KD PROTEIN
COWPOX VIRUS
28-55


PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
462-489


PI196_ASFB7
LATE PROTEIN I196l
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
12-43


PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
113-147


PIBMP_CAMV4
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D4)
17-44


PIBMP_CAMVD
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
17-44


PIBMP_CAMVP
INCLUSION BODY MATRIX PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
383-410


PIBMP_CERV
INCLUSION BODY MATRIX PROTEIN
CARNATION ETCHED RING VIRUS
6-33


PIBMP_FMVD
INCLUSION BODY MATRIX PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
372-407


PIBMP_SOCMV
INCLUSION BODY MATRIX PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
3-48
331-358


PIC18_HCMVA
PROB PROC &TRANSPORT PRO UL56
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-324


PIC18_HSVSA
PROBABLE PROC &TRANSPORT PRO
HERPESVIRUS SAIMIRI (STRAIN 11)
58-85
482-522


PIC18_MCMVS
PROB PROC &TRANSPORT PRO
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
661-691


PIE63_HSVII
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
248-275


PIE68_HSVII
IMMEDIATE-EARLY PROTEIN IE68
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
40-67


PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
48-78


PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
22-49


PIR12_HCMVA
HYPOTHETICAL PROTEIN IRL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-162


PIR13_HCMVA
HYPOTHETICAL PROTEIN IRL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
31-62


PKFES_FSVGA
TYROSINE KINASE TRANSF PROTEIN FES
FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN)
106-150


PKFGR_FSVGR
TYROSINE KINASE TRANSF PROTEIN FGR
FELINE SARCOMA VIRUS (STRAIN GARDNER-RASHEED)
218-252


PKFMS_FSVMD
FMS TYROSINE KINASE TRANSF PROTEIN
FELINE SARCOMA VIRUS (STRAIN MCDONOUGH)
327-362


PKFPS_FUISV
TYROSINE KINASE TRANSF PROTEIN FPS
FUJINAMI SARCOMA VIRUS
155-243
349-397


PKITH_AMEPV
THYMIDINE KINASE
AMSACTA MOOREI ENTOMOPOXVIRUS
47-84


PKITH_CAPVK
THYMIDINE KINASE
CAPRIPOXVIRUS (STRAIN KS-1)
41-68


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
340-386


PKITH_ILTVT
THYMIDINE KINASE
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN
334-361




THORNE V882)


PKR74_HSVII
GENE 74 PROTEIN KINASE
ICTALURID HERPES VIRUS 1
491-518


PKRB1_VACCC
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
141-168


PKRB1_VACCV
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
141-168


PKRB2_VACCC
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN COPENHAGEN)
147-174


PKRB2_VACCV
POSSIBLE PROTEIN KINASE B12
VACCINIA VIRUS (STRAIN WR)
147-174


PKRF1_VACCC
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN COPENHAGEN)
47-74


PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
47-74


PKROS_AVISU
ROS TYROSINE KINASE TRANSF PROTEIN
AVIAN SARCOMA VIRUS (STRAIN UR2)
111-138


PKRYK_AVIR3
TYROSINE KINASE TRANSF PROTEIN RYK
AVIAN RETROVIRUS RPL30
22-49


PKYES_AVISY
TYROSINE KINASE TRANSF PROTEIN YES
AVIAN SARCOMA VIRUS (STRAIN Y73)
199-233


PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
386-413


PL100_ADE05
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
386-413


PL100_ADE40
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 40
191-231


PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
206-233


PLMP1_EBV
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-175


PLMP1_EBVC
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN CAO)
148-175


PLMP1_EBVR
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN RAJI)
148-175


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
294-321


PMCEL_SFVKA
MRNA CAPPING ENZYME, LARGE SUBUNI
SHOPE FIBROMA VIRUS (STRAIN KASZA)
54-156
289-316
497-524
622-656


PMCEL_VACCC
MRNA CAPPING ENZYME, LARGE SUBUNI
VACCINIA VIRUS (STRAIN COPENHAGEN)
85-112
291-311
630-657


PMCEL_VACCV
MRNA CAPPING ENZYME, LARGE SUBUNI
VACCINIA VIRUS (STRAIN WR)
85-112
291-318
630-657


PMCEL_VARV
MRNA CAPPING ENZYME, LARGE SUBUNI
VARIOLA VIRUS
85-112
291-318
630-657


PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
279-313


PMOVP_CGMVS
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
170-197




(WATERMELON STRAIN W)


PMOVP_CGMVW
MOVEMENT PROTEIN
CUCUMBER GREEN MOTILE MOSAIC VIRUS
170-197




(WATERMELON STRAIN SH)


PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
53-90


PMOVP_TOMVA
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LIIA)
46-80


PMOVP_TOMVL
MOVEMENT PROTEIN
TOMATO MOSAIC VIRUS (STRAIN LII)
46-80


PMTC1_CHVNI
MODIFICATION METHYLASE CVIB1
CHLORELLA VIRUS NC-1A
143-170
229-256


PMTC2_CHYPI
MODIFICATION METHYLASE CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
4-31
130-172


PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS CMI1
232-266
375-402


PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
233-267
376-403


PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HBI
233-267
376-403


PMYC_AVIME
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS MH2E21
239-261
377-404


PMYC_AVIOK
MYC TRANSFORMING PROTEIN
AVIAN RETROVIRUS OK10
227-261
370-397


PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-420


PMYC_FLVTI
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PROVIRUS FTT
393-420


PNCAP_BEV
NUCLEOCAPSID PROTEIN
BERNE VIRUS
49-76
129-156


PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
85-112


PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
96-123


PNCAP_BUNYW
NUCLEOCAPSID PROTEIN
BUNYAMWERA VIRUS
48-75
189-220


PNCAP_CCHFV
NUCLEOCAPSID PROTEIN
CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS (ISOLATE
223-271




C680JI)


PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
140-174


PNCAP_CHAV
NUCLEOCAPSID PROTEIN
CHANDIPURA VIRUS (STRAIN I653514)
40-74


PNCAP_CVCAE
NUCLEOCAPSID PROTEIN
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
191-227


PNCAP_CVPPU
NUCLEOCAPSID PROTEIN
PORCINE TRANSMISSIBLE GASTROENTERITIS
191-227




(STRAIN PURD


PNCAP_CVPR8
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS (STRAIN
191-227




86/137004/BRITISH ISOLAT


PNCAP_CVPRM
NUCLEOCAPSID PROTEIN
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
191-227


PNCAP_DUGBV
NUCLEOCAPSID PROTEIN
DUGBE VIRUS
238-263


PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
182-209


PNCAP_HAZVI
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
6-33
256-283


PNCAP_HRSVI
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
4-31
74-108
112-141




B/STRAIN 18537)


PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
4-31


PNCAP_LASSG
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN GA391)
64-99
147-174


PNCAP_LASSJ
NUCLEOCAPSID PROTEIN
LASSA VIRUS (STRAIN JOSIAH)
64-99
467-504


PNCAP_LYCVA
NUCLEOCAPSID PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN
64-97




ARMSTRONG)


PNCAP_MAGV
NUCLEOCAPSID PROTEIN
MAGUARI VIRUS
41-68
192-219


PNCAP_MOPEI
NUCLEOCAPSID PROTEIN
MOPEIA VIRUS
64-99


PNCAP_PIIHC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
377-404
455-482


PNCAP_PIIHW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
377-404
444-488




WASHINGTON/1957)


PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH) 47885
376-403


PNCAP_PTPV
NUCLEOCAPSID PROTEIN
PUNTA TORO PHLEBOVIRUS
3-30


PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
2-29


PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
2-29


PNCAP_PVM
NUCLEOCAPSID PROTEIN
PNEUMONIA VIRUS OF MICE
93-120


PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVOI)
133-167


PNCAP_RABVP
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN PV)
133-167


PNCAP_RABVS
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN SAD B19)
133-167


PNCAP_SENDS
NUCLEOCAPSID PROTEIN
SENDAJ VIRUS (STRAIN Z/HOST MUTANTS)
363-404


PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDER5)
363-404


PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
363-404


PNCAP_SFSV
NUCLEOCAPSID PROTEIN
SANDFLY FEVER SICILIAN VIRUS
4-31


PNCAP_SV41
NUCLEOCAPSID PROTEIN
SIMIAN VIRUS 41
507-534


PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
50-77


PNCAP_TOSV
NUCLEOCAPSID PROTEIN
TOSCANA VIRUS
6-33


PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEM1 VIRUS
68-102


PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
284-314


PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN
149-176
284-314




MAKAH)


PNCAP_VSVIG
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE)
56-83




INDIANA/STRAIN GLASGOW


PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW) JERSEY/
67-94
338-365




STRAIN OGDEN


PNCAP_VSVSJ
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
56-83


PNEF_HVIEL
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
81-119


PNEF_HVIND
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK
81-119




ISOLATE)


PNEF_HVIZ6
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ZAIRE 6
86-124




ISOLATE)


PNEF_SIVAI
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE
96-137




GRI-1)


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/BLACK
47-81




DUCK/AUSTRALIA/702/78)


PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82
33-64


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
16-43
50-91


PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76)
51-81


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/DUCK/GERMANY/49)
21-48


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
10-48
52-80
197-224




VIRUS/WEYBRIDGE)


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/74)
197-224
386-413


PNRAM_IAHKI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/81)
5-44
46-76
364-400


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
50-81


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
50-81


PNRAM_IAMEI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
16-43
50-81




A/MEMPHIS/1/71H-A/BELLAMY/42N)


PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73)
16-43
50-81


PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
16-43


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
49-88




JERSEY/60/85)


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/TERN/AUSTRALIA/G70C/75)
49-82


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
50-81


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84)
49-88


PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
16-43


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
4-35


PNS1_SIDEV
PROB NONSTRUC PRO PRECURSOR
BOMBYX DENSONUCLEOSIS VIRUS
283-310


PNS2_SIDEY
PROB NONSTRUC PRO PRECURSOR
BOMBYX DENSONUCLEOSIS VIRUS
42-69


PNSS_INSVN
NON-STRUCTURAL PROTEIN
IMPATIENS NECROTIC SPOT VIRUS (STRAIN NL-07)
95-122


PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE
5-32
432-462




CPNIII/BR-01)


PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
5-32


PNTP1_AMEPV
NUCLEOSIDE TRIPHOSPHATASE 1
AMSACTA MOOREI ENTOMOPOXVIRUS
28-69


PNTP1_CBEPV
NUCLEOSIDE TRIPH0SPHATASE 1
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
122-166
347-374
524-551


PNTP1_VACCC
NUCLEOSIDE TRIPHOSPHATASE 1
VACCINIA VIRUS (STRAIN COPENHAGEN)
65-92
394-421
514-587


PNTP1_VACCV
NUCLEOSIDE TRIPHOSPHATASE 1
VACCINIA VIRUS (STRAIN WR)
65-92
394-421
514-587


PNTP1_VARV
NUCLEOSIDE TRIPHOSPHATASE 1
VARIOLA VIRUS
300-327
420-447
455-493


PP100_HSV6U
MAJOR ANTIGENIC STRUCTL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
81-108
189-216
688-715
785-812


PPAP1_VACCC
POLY(A) POL CATALYTIC SUBUNIT
VACCINIA VIRUS (STRAIN COPENHAGEN)
88-115


PPAP1_VACCV
POLY(A) POL CATALYTIC SUBUNIT
VACCINIA VIRUS (STRAIN WR)
88-115


PPAP1_VARV
POLY(A) POL CATALYTIC SUBUNIT
VARIOLA VIRUS
88-115


PPAP2_CAPVK
POLY(A) POL REG SUBUNIT
CAPRIPOXVIRUS (STRAIN KS-1)
118-145


PPAP2_FOWPV
POLY(A) POL REG SUBUNIT
FOWLPOX VIRUS
27-54


PPE12_NPVAC
12.1 KD PROTEIN IN PE 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
61-105




VIRUS


PPE12_NPVOP
11.5 KD PROTEIN IN P26 5′REGION
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
61-95




VIRUS


PPE38_NPVAC
MAJOR IMMEDIATE EARLY PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
204-248




VIRUS


PPE48_NPVAC
48.3 KD IN PE-P26 INTERGENIC REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
4-38
51-78




VIRUS


PPENE_ADEGX
PENTON PROTEIN
AVIAN ADENOVIRUS GAL10 (STRAIN SA2)
96-123


PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE)
1272-
1775-
2236-





1299
1802
2263


PPOL1_BAYMI
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1)
1774-
2234-





1801
2261


PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS
481-508
1909-






1941


PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
170-197
636-677
958-985
1161-








1195


PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
1096-





1123


PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE)
240-281
801-828


PPOL2_BAYMJ
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1)
240-267
801-828


PPOL2_GCMV
RNA2 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS
11-38


PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
549-576


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY)
982-





1009


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
17-44
1030-
1145-






1057
1172


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL)
629-660
1082-
1303-
2233-
2476-
2609-
3613-






1112
1330
2261
2503
2636
3642


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1)
1303-
2143-
2519-
2802-
3523-





1333
2171
2546
2829
3550


PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
96-123


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
7-34
664-694
1062-
1900-







1099
1930


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
1040-





1076


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
645-672
841-868
1021-







1057


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
1024-
1881-





1060
1908


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
644-673
1022-






1058


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
1024-





1060


PPOLG_CYVY
GENOME POLYPROTEIN
CLOVER YELLOW VEIN VIRUS
120-154


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90)
1858-
2890-
2989-





1885
2933
3016


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
1544-
1858-
2908-
2982-
3117-





1571
1885
2935
3016
3147


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
1544-
1858-
2485-
2908-
2982-
3117-





1571
1885
2519
2935
3016
3147


PPOLG_DEN21
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
1544-
1858-
2908-
3117-
3346-





1571
1885
2935
3147
3373


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
1544-
1858-
2905-
2979-
3114-
3343-





1571
1885
2932
3013
3144
3370


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
1134-
1448-





1161
1475


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
837-864
1542-
1857-
2494-
2980-
3345-






1569
1884
2521
3014
3372


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
2885-
2977-
3342-





2930
3011
3369


PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS II (STRAIN GREGORY)
213-249


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
70-108
1484-
1522-






1518
1563


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-B
70-97
1486-
1524-




NONDIABETOGENIC)

1520
1565


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-D
70-97
1486-
1524-




DIABETOGENIC)

1520
1565


PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS (STRAIN 37A)
70-108


PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
3-41


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61)
302-329
1119-






1146


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12)
301-328
1119-






1146


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAINS OIK AND
1119-




OIBFS)
1146


PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN CI-SANTA PAU
101-128




[C-S8])


PPOLG_HCVI
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
702-729


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
699-726
1195-
1303-
1434-
3068-
3406-






1232
1333
1461
3095
3440


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
699-726
1195-
3068-
3406-
3532-






1232
3095
3440
3559


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
702-729
1045-






1072


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 11)
702-729
1045-






1072


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
374-401
2089-






2116


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
1049-
2089-





1076
2116


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
378-405
702-729
1045-







1072


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
702-729
1045-






1072


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
702-729
1045-






1072


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
203-237
1021-
1117-
1434-






1048
1149
1481


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
203-237
1021-
1117-
1434-






1048
1149
1481


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
203-237


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
182-216


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27)
207-241
1025-
1115-






1052
1192


PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN CY-145)
203-237


PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14
17-44
559-586
652-679
1877-








1904


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B
1132-
1855-





1159
1882


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2
1125-
1552-





1152
1593


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89
883-910
1141-
1566-
1862-






1168
1607
1869


PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71)
876-910


PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN OH)
231-277


PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14)
214-248
983-
2796-






1010
2823


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V))
214-248
983-
2796-






1010
2823


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982)
214-248
983-
2796-






1010
2823


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA)
141-175
911-938


PPOLG_KUNIM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
980-





1007


PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
431-465
1634-






1661


PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
431-465


PPOLG_LIV
GENOME POLYPROTEIN
LOUPING ILL VIRUS
431-465


PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
151-185


PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT
671-698
3056-
3303-






3083
3330


PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS
10-37


PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
212-256


PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
24-51
946-973


PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTILE VIRUS (CALIFORNIA ISOLATE)
377-404
704-738
831-838
900-927
1167-
1485-
1787-
2433-









1201
1512
1814
2464


PPOLG_POLIM
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1060-
1901-





1100
1931


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
670-697
1063-
1903-






1101
1933


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1061-
1901-





1099
1931


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1061-
1901-





1099
1931


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
1060-
1900-





1098
1930


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND P3/LEON
1060-
1900-




12A[I]B)
1098
1930


PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
921-948
1498-
2771-






1525
2798


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS STRAIN EL AMAR)
1146-





1187


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
920-947
1497-
2770-






1524
2800


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
920-947
1497-
2770-






1524
2797


PPOLG_PRSVH
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA)
500-527


PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1)
391-418


PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN W)
489-516


PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPDI)
271-315
1132-
1510-






1177
1537


PPOLG_PVYC
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C) (PVY)
433-460
701-735


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
218-245
433-460
701-735
1486-
1777-








1513
1811


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
433-460
701-735
1486-
1777-







1513
1811


PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
433-460
701-735


PPOLG_PYFV1
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
1124-
2707-





1151
2734


PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
10-37


PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76)
1024-





1060


PPOLG_SVDVU
GENOME POLYPROTEIN
1024-1060


PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN)
87-121
234-272
1632-
2265-
2909-







1661
2292
2936


PPOLG_TBEVW
GENOME POLYPROTEIN
BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE)
1632-





1659


PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS
845-872
1148-
1416-
1773-






1175
1443
1800


PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN
79-117
200-227




BEAN 8386)


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN
90-117
200-227




DA)


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN
90-117
200-227




GDVII)


PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
232-262
773-800


PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
406-433
670-704
2708-







2742


PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
202-229


PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
210-254
3385-






3412


PPOLG_YEFVI
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
436-463


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204)
436-463


PPOLG_ZYMY
GENOME POLYPROTEIN
ZUCCHINI YELLOW MOSAIC VIRUS
69-96


PPOLH_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1063-
1903-





1101
1933


PPOLN_EEVVT
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN
1402-
1894-




TRINIDAD DONKEY)
1467
1921


PPOLN_FCVC6
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV)
445-472


PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9)
1034-





1061


PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA)
219-246
349-376


PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO)
219-246
349-376


PPOLN_HEVMY
N-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
219-246
349-376


PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
218-245
348-375


PPOLN_MIDDV
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
955-982


PPOLN_ONNVG
NONSTRUCTURAL POLYPROTEIN
O′NYONG-NYONG VIRUS (STRAIN GULU)
2453-





2480


PPOLN_RHDV
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
313-347
1657-






1684


PPOLN_RRVN
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
1057-
1477-
2418-





1084
1504
2445


PPOLN_RRVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
146-173
1087-






1114


PPOLN_RUBVT
NONSTRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
2060-





2087


PPOLN_SPV
NONSTRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1154-





1181


PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)
936-970


PPOLN_WEEV
NONSTRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
4-31


PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70)
231-258


PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN
231-258




AUSTRALIAN 002-73)


PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN CU-1)
231-258


PPOLS_IBDVE
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN E)
231-258


PPOLS_IBDVP
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN
212-239




PBG-98)


PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN STC)
231-258


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O′NYONG-NYONG VIRUS (STRAIN GULU)
356-383


PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB 5092)
939-973


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
939-973


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)
1138-





1165


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
1138-





1165


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
920-947


PPOL_BAEVM
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
673-706
715-742


PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK)
886-924


PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
333-360
838-865
1075-
1178-
1313-







1102
1205
1347


PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
472-505
826-853


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
472-505
826-853


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING)
471-504
825-852


PPOL_FENVI
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECE1
532-599
627-654


PPOL_FIYPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE PETALUMA)
442-473


PPOL_FMVD
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
403-430


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
535-562
676-703


PPOL_HTLIA
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK)
674-712


PPOL_HTLIC
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBIIEAN
674-712




ISOLATE)


PPOL_HVIA2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2
218-245
620-661




ISOLATE)


PPOL_HVIB1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10
230-257
637-673




ISOLATE)


PPOL_HVIB5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE)
230-257
632-673


PPOL_HVIBR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU
230-257
632-673




ISOLATE)


PPOL_HVIEL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE)
217-244
624-660


PPOL_HVIH2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HBX2
218-245
620-661
921-951




ISOLATE)


PPOL_HVIJR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF
222-249
624-665




ISOLATE)


PPOL_HVIMA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL
217-244
476-510
619-660




ISOLATE)


PPOL_HVIMN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE)
221-248
623-664


PPOL_HVINS
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5
218-245
625-661




ISOLATE)


PPOL_HVIND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK
217-244
624-660




ISOLATE)


PPOL_HVIOY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE)
218-245
620-661


PPOL_HVIPV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22
230-257
637-673




ISOLATE)


PPOL_HVIRH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT
217-244
619-660




ISOLATE)


PPOL_HVIU4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN
217-244
513-540
619-660




UGANDAN/ISOLATE U


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34
217-244
619-660




ISOLATE)


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
491-582




BEN)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
471-562




CAM2)


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
509-600




D194)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
491-568




D205,7)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
471-562




GHANA-1)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
471-529




NIH-Z)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
472-563




ROD)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE
473-562




SBLISY)


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ST)
491-582


PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
200-227
354-381
461-499


PPOL_IPMA
PUTATIVE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
211-238
302-329
400-427


PPOL_IPMAI
PROBABLE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
130-157
221-248


PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
204-231


PPOL_MLVAX
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
453-480


PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
805-832


PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
716-743
805-832


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS (STRAIN KAPLAN)
101-128
190-217


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
574-612
670-697


PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
67-94
471-505
873-900


PPOL_RSVP
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
797-824


PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS
7-44
59-93
176-203
202-229
410-437
447-476
1022-











1049


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)
7-44
59-93
176-203
202-229
410-437
447-476
1022-











1049


PPOL_SFV1
POL POLYPROTEON
SIMIAN FOAMY VIRUS (TYPE 1)
427-454


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
431-458
547-574
637-671


PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM266 ISOLATE)
45-72


PPOL_SIVA3
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM385 ISOLATE)
71-98


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
436-463
482-516
642-669


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE
478-515




GRI-1)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
657-691


PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS SIV(CPZ))
242-269
626-685


PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
227-254
636-670


PPOL_SIVM1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)
533-560


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
533-560


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE)
496-523


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE)
499-526


PPOL_SMRVH
POL POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
601-628


PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
268-295
348-419


PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
578-612
670-697


PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
490-524
881-919


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS1)
89-116
490-524
881-919


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS2)
490-524
881-919


PPR73_MMTVB
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
288-315


PPR73_MMTVC
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
45-79


PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
167-201


PPYHD_CPVBM
POLYHEDRIN PRECURSOR
DOMBYX MORI CYTOPLASMIC POLYHEDROSIS VIRUS
37-71


PPYHD_NPVAC
POLYHEDRIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
13-47




VIRUS


PPYHD_NPVAS
POLYHEDRIN
AGROTIS SEGETUM NUCLEAR POLYHEDROSIS VIRUS
14-48
201-228


PPYHD_NPVBM
POLYHEDRIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
12-46


PPYHD_NPVBS
POLYHEDRIN
BUZURA SUPPRESSARIA NUCLEAR POLYHEDROSIS VIRUS
14-48


PPYHD_NPVHC
POLYHEDRIN
HYPHANTRIA CUNEA NUCLEAR POLYHEDROSIS VIRUS
13-40


PPYHD_NPVLD
POLYHEDRIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVMB
POLYHEDRIN
MAMESTRA BRASSICAE NUCLEAR POLYHEDROSIS VIRUS
14-48


PPYHD_NPVOP
POLYHEDRIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
13-47




VIRUS


PPYHD_NPVOS
POLYHEDRIN
ORGYIA PSEUDOTSUGATA SINGLE CAPSID NUCLEAR
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVPF
POLYHEDRIN
PANOLIS FLAMMEA MULTIPLE NUCLEOCAPSID
14-48




POLYHEDROSIS VIRUS


PPYHD_NPVSE
POLYHEDRIN
SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS VIRUS
14-48




(STRAIN US)


PPYHD_NPVSF
POLYHEDRIN
SPODOPTERA FRUGIPERDA NUCLEAR POLYHEDROSIS VIRUS
14-48


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
41-68


PREV_VILV
REV PROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
22-62


PRIRI_ASFM2
RIBONUC-DIPHOSPH REDUCT LARGE CHA
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAW1 LII, 20/1)
7-41
88-119
363-390


PRIR1_HCMVA
RIBONUC-DIPHOSPH REDUCT LARGE CHA
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
622-649


PRIR1_HSVEB
RIBONUC-DIPHOSPH REDUCT LARGE CHA
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
75-102


PRIR1_HSVSA
RIBONUC-DIPHOSPH REDUCT LARGE CHA
HERPES VIRUS SAIMIRI (STRAIN 11)
324-351


PRIR1_VACCC
RIBONUC-DIPHOSPH REDUCT LARGE CHA
VACCINIA VIRUS (STRAIN COPENHAGEN)
367-401


PRIR1_VACCV
RIBONUC-DIPHOSPH REDUCT LARGE CHA
VACCINIA VIRUS (STRAIN WR)
367-401


PRIR1_VARV
RIBONUC-DIPHOSPH REDUCT LARGE CHA
VARIOLA VIRUS
367-401


PRIR1_VZVD
RIBONUC-DIPHOSPH REDUCT LARGE CHA
VARICELLA-ZOSTER (STRAIN DUMAS)
119-146


PRIR2_HSVB3
RIBONUC-DIPHOSPH REDUCT SMALL CHA
BOVINE HERPESVIRUS TYPE 1 (STRAIN 34)
90-117


PRP94_VACCV
RNA-POL-ASSOC TRANS SPEC FACTOR
VACCINIA VIRUS (STRAIN WR)
41-68
513-540


PRP94_VARV
RNA-POL-ASSOC TRANS SPEC FACTOR
VARIOLA VIRUS
41-75
77-104
513-540


PRPO1_VACCC
DNA-DIRECTED RNA POL 147 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
237-264
587-616
810-837
961-992


PRPO1_VACCV
DNA-DIRECTED RNA POL 147 KD
VACCINIA VIRUS (STRAIN WR)
237-264
587-616
810-837
961-992
1011-









1038


PRPO1_VARV
DNA-DIRECTED RNA POL 147 KD
VARIOLA VIRUS
237-264
587-616
810-837
961-992


PRPO2_CAPVK
DNA-DIRECTED RNA POL 132 KD
CAPRIPOXVIRUS (STRAIN KS-1)
19-65
114-155


PRPO2_COWPX
DNA-DIRECTED RNA POL 132 KD
COWPOX VIRUS
211-241
481-509


PRPO2_VACCV
DNA-DIRECTED RNA POL 132 KD
VACCINIA VIRUS (STRAIN WR)
211-241
481-509


PRPO2_VARV
DNA-DIRECTED RNA POL 132 KD
VARIOLA VIRUS
211-241
411-509


PRPO4_CAPYX
DNA-DIRECTED RNA POL 35 KD
CAPRIPOXVIRUS (STRAIN KS-1)
36-63


PRPO7_VACCV
DNA-DIRECTED RNA POL 19 KD
VACCINIA VIRUS (STRAIN WR)
8-35
43-70


PRPO7_VARV
DNA-DIRECTED RNA POL 19 KD
VARIOLA VIRUS
43-70


PRPOA_LELV
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS
1533-





1560


PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS
818-915
1639-






1673


PRRP1_IAKOR
RNA-DIRECTED RNA POL SUB P1
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
575-602


PRRP2_IAANN
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
119-146


PRRP2_IADH2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
119-146


PRRP2_IAFPR
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
119-146




VIRUS/ROSTOCK/34)


PRRP2_IAGU2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS STRAIN A/GULL/MARYLAND/704/77)
119-146


PRRP2_IAHLO
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
119-146


PRRP2_IAHTE
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
119-146


PRRP2_IAKOR
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/XOREA/426/68)
119-146


PRRP2_IALE1
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
119-146


PRRP2_IALE2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
119-146


PRRP2_IAMAN
RNA-DIRECTED KNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW
119-146




YORK/6750/78)


PRRP2_IANT6
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
119-146


PRRP2_IAP10
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79)
119-146


PRRP2_IAPUE
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
119-146


PRRP2_IARUD
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
119-146




JERSEY/47/85)


PRRP2_IASIN
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
119-146


PRRP2_IATKM
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN
119-146




A/TURKEY/MINNESOTA/83/80)


PRRP2_IAV17
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
119-146
327-354


PRRP2_IAWIL
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
119-146


PRRP2_IA2H2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78)
119-146


PRRP2_IAZH3
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
119-146


PRRP2_IAZII
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
119-146


PRRP2_IAZTF
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77)
119-146


PRRP2_INBAC
RNA-DIRECTED RNA POL SUB P2
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
157-194




ADAPTED])


PRRP2_INBAD
RNA-DIRECTED RNA POL SUB P2
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 (WILD-
164-194




TYPE)


PRRP2_INBSI
RNA-DIRECTED RNA POL SUB P2
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
157-194


PRRP3_IABUD
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN
537-367




A/BUDGERIGA/IIOKKAIDO/1/77)


PRRP3_IACH1
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
331-358


PRRP3_IAHPR
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
331-361
480-507


PRRP3_IAZTE
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77)
487-514


PRRP3_INBAC
RNA-DIRECTED RNA POL SUB P3
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-
2-33
472-509




ADAPTED])


PRRP3_INBAD
RNA-DIRECTED RNA POL SUB P3
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 (WILD-
2-33
472-509




TYPE)


PRRP3_INCBE
RNA-DIRECTED RNA POL SUB P3
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
509-536


PRRP3_INCII
RNA-DIRECTED RNA POL SUB P3
INFLUENZA C VIRUS (STRAIN C/11/50)
509-536


PRRP3_THOGV
RNA-DIRECTED RNA POL SUB P3
THOGOTO VIRUS
149-176
358-385


PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
516-543
724-751
1971-
3781-







2008
3811


PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
624-651
4326-






4353


PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS
27-54
557-584
943-984


PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
885-915
1129-






1170


PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
885-915
1129-






1170


PRRPB_CVPFS
RNA-DIRECTED RNA POLYMERASE
PORCINE TRANSMISSIBLE GASTROENTERITIS
20-47
353-380
385-412




CORONAVIRUS (STRAIN FS772


PRRPB_IBVB
RNA DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
1510-
2296-
2547-




BEAUDETTE)
1547
2331
2574


PRRPB_IBVK
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
165-200
416-443


PRRPL_BTV10
RNA-DIRECTED RNA POLYMERASE
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
1032-





1059


PRPPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
80-114
317-350
1802-
1892-







1861
1919


PRRPL_CDVO
RNA POLYMERASE BETA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
24-51


PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118)
404-433
461-510
564-591
738-765
905-946
1993-










2020


PRRPL_HRSVA
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
103-192
210-237
667-694
788-815
1007-
1138-
1453-
1776-
2062-









1034
1165
1480
1803
2089


PRRPL_MABVM
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
991-
1143-
1490-
1811-
2029-
2216-





1018
1170
1524
1838
2067
2266


PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
991-
1490-
2239-





1018
1524
2267


PRRPL_MEASE
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
95-122
196-223
2121-







2148


PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
111-142
780-807
1602-







1632


PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
NEW CASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
250-284
477-504
1979-







2013


PRRPL_P12HT
RNA POLYMERASE BETA SUBUN1T
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
322-349
1564-
1687-
1901-






1598
1721
1946


PRRPL_P13H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
52-86
136-163
608-638
1081-
1994-
2115-








1123
2036
2142


PRRPL_PUUMH
RNA-DIRECTED RNA POLYMERASE
PUUMALA VIRUS (STRAIN HALLNAS B1)
388-415
557-591
731-758
864-891
926-953
1940-
1998-










1971
2025


PRRPL_RABVP
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
204-231
605-632
2068-







2123


PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
204-231
605-632
2068-







2123


PRRPL_RDV
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS
855-882


PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
1536-
1653-





1563
1687


PRRPL_SEND5
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
629-656
1082-
1729-
2145-






1116
1756
2180


PRRPL_SENDE
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
449-476
902-936
1549-
1965-







1576
2000


PRRPL_SENDZ
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
629-656
1082-
1729-
2145-






1116
1756
2180


PRRPL_SEOU8
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
461-488
564-591
731-758
905-932


PRRPL_SVSWR
RNA POLYMERASE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR)
1096-
1250-
1680-
2120-





1123
1277
1710
2147


PRRPL_SYNV
RNA POLYMERASE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS
825-859
1092-
1490-
1973-
2080-






1119
1520
2000
2107


PRRPL_TSWVB
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE
477-504
542-573
119-
1195-
1330-
1415-
1671-
1857-
2083-




CPNHI/BR-01)


1150
1229
1357
1442
1698
1884
2110





2166-
2324-
2771-





2193
2368
2798


PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS
142-187
1037-
1304-






1071
1331


PRRPL_VSVJH
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW
1530-
1809-




JERSEY/STRAIN HAZELHU
1557
1836


PRRPL_VSVJO
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW
1205-
1809-




JERSEY/STRAIN OGDEN)
1232
1836


PRRPL_VSVSJ
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
1540-
1768-





1567
1798


PPRPO_ACLSV
RNA-DIRECTED RNA POLYMERASE
APPLE CHLOROTIC LEAF SPOT VIRUS
228-264
564-591


PRRPO_BWYVF
PUTATIVE RNA-DIR RNA POL
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
356-383


PRRPO_BYDVI
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PS1)
772-799


PRRPO_BYDVP
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
772-799


PRRPO_BYDVR
PUTATIVE RNA-DIR RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV)
772-799


PRRPO_CARMV
PUTATIVE RNA-DIR RNA POL
CARNATION MOTTLE VIRUS
93-127
277-304
667-694


PRRPO_CGMVS
PUTATIVE RNA-DIR RNA POL
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
387-414
1040-




(WATERMELON STRAIN SH)

1067


PRRPO_IBDVS
PUTATIVE RNA-DIR RNA POL
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70)
336-363
392-419


PRRPO_IBDVA
PUTATIVE RNA-DIR RNA POL
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN
661-688
717-744




AUSTRALIAN 002-73)


PRRPO_IPNVJ
PUTATIVE RNA-DIR RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE
773-800




JASPER)


PRRPO_IPNVS
PUTATIVE RNA-DIR RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE SP)
773-800


PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN
834-886
1052-




ARMSTRONG)

1079


PRRPO_PPMVS
PUTATIVE RNA-DIR RNA POL
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
402-429
709-736
1072-







1099


PRRPO_REOVD
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 1/STRAIN DEARING)
61-88


PRRPO_REOVL
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 1/STRAIN LANG)
61-88


PRRPO_ROTBR
RNA-DIR RNA POL SUBUNIT VP1
BOVINE ROTAVIRUS (STRAIN RF)
68-95
218-245
791-818


PRRPO_ROTBU
RNA-DIR RNA POL SUBUNIT VP1
BOVINE ROTAVIRUS (STRAIN UK)
65-95
218-245
791-841
975-








1002


PRRPO_ROTPC
RNA-DIR RNA POL SUBUNIT VP1
BOVINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
3-44
75-102
363-390
543-585


PRRPO_ROTPG
RNA-DIR RNA POL SUBUNIT VP1
BOVINE ROTAVIRUS (STRAIN GOTTFRIED
65-95
102-129
791-839
973-








1002


PRRPO_ROTS1
RNA-DIR RNA POL SUBUNIT VP1
SIMILAN 21 ROTAVIRUS (STRAIN SA11)
65-95
791-839
975-







1002


PRRPO_SCVLA
RNA-DIRECTED RNA POLYMERASE
SACCHAROMYCES CEREVISIAE VIRUS L-A
147-188


PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
163-204
241-271
1107-
1978-







1134
2008


PRRPO_TMGMV
PUTATIVE RNA-DIR RNA POL
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
230-257
1316-
1397-






1343
1424


PRRPP_BRSVA
RNA POLYMERASE ALPHA SUBUNIT
BOVINE RESPIRATOR SYNCYTIAL VIRUS (STRAIN A51908)
99-133


PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
315-370


PRRPP_HRSV
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141


PRRPP_HRSV1
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
99-141




B/STRAIN 18537)


PRRPP_HRSVA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
99-141


PRRPP_HRSVL
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
99-141




A/STRAIN LONG)


PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
315-370


PRRPP_MEASI
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
315-370


PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
315-370


PRRPP_PIIHB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C35)
84-111
234-261
375-416


PRRPP_PIIHC
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
84-111
234-261
375-416


PRRPP_PIIHD
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-5/73)
84-111
232-262
375-416


PRRPP_PIIHE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/83)
84-111
244-271
375-416


PRRPP_P12H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256


PRRPP_P12HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
167-194
222-256


PRRPP_P13B
RNA POLYMERASE ALPHA SUBUNIT
BOVINE PARAINFLUENZA 3 VIRUS
34-91
255-282
285-314


PRRPP_P13H4
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
114-144
269-299


PRRPP_P14HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
4-38


PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
93-127


PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
SENDA1 VIRUS (STRAIN Z/HOST MUTANTS)
330-357
379-420


PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDA1 VIRUS (STRAIN 6/94)
330-357
379-420


PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDA1 VIRUS (STRAIN FUSHIMI)
330-357
379-420


PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDA1 VIRUS (STRAIN HARRIS)
330-357
379-420


PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDA1 VIRUS (STRAIN Z)
330-357
379-420


PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3)
205-232


PSODC_VACCV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN WR)
72-99


PSODC_VARV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VARIOLA VIRUS
72-99


PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
91-118
140-167
227-261
361-390


PSPII_MYXVL
SERPIN I
MYXOMA VIRUS (STRAIN LAUSANNE)
286-313


PSPI2_VACCV
SERINE PROTEINASE INHIBITOR 2
VACCINIA VIRUS (STRAIN WR)
59-86


PSPIA_VACCC
SERINE PROTEASE INH 2 HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
18-65


PT2C2_CHVPI
TYPE II RESTRICTION ENZYME CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
16-43


PTAA2_VACCV
TRANS-ACTIVATOR PROTEIN A2
VACCINIA VIRUS
95-133


PTAG8_FOWPV
TRANS-ACTIVATOR PROTEIN FPO
FOWLPOX VIRUS
3-51


PTAG8_VACCV
TRANS-ACTIVATOR PROTEIN GK1
VACCINIA VIRUS
3-30


PTAG8_VARV
TRANS-ACTIVATOR PROTEIN GK1
VARIOLA VIRUS
3-30


PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
291-318


PTALA_POVBO
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
502-537


PTALA_POVHA
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
587-621


PTALA_POVLY
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
224-258
616-684


PTALA_POVM3
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
513-540


PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
511-538


PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL-
508-535




PLAQUE)


PTATR_NPVAC
TRANS-ACT TRANS REG PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
407-434
489-523
532-559




VIRUS


PTATR_NPVBM
TRANS-ACT TRANS REG PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
412-439
494-528
537-564


PTATR_NPVOP
TRANS-ACT TRANS REG PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
512-554




VIRUS


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
145-172
1215-
1344-
1876-






1242
1371
1903


PTEGU_HCMVA
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALO VIRUS (STRAIN AD169)
1251-
2202-





1281
2229


PTEGU_HSVII
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
667-694
1673-






1710


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
102-129
228-262
567-611
962-993
1098-
1661-
1884-









1181
1688
1911


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
229-256
566-593
1205-







1232


PTEGU_HSVSA
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
524-607
672-700
777-814
846-808
949-986
990-
1467-
2102-










1017
1497
2135


PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
1121-
1579-





1158
1609


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
375-413


PTMAF-AVIS4
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC FIBROSARCOMA VIRUS
302-336




AS42


PTOP1_SFVKA
DNA TOPOISOMERASE I
SHOPE FIBROMA VIRUS (STRAIN KASZA)
38-65
132-176


PTOP1_VACCV
DNA TOPOISOMERASE I
VACCINIA VIRUS
38-65


PTOP1_VARY
DNA TOPOISOMERASE I
VARIOLA VIRUS
38-65


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI LIL 20/1)
902-936


PTYSY_HSVAT
THYMIDYLATE SYNTHASE
HERPES VIRUS ATELES
116-143


PTYSY_HSVSA
THYMIDYLATE SYNTHASE
HERPES VIRUS SAIMIRI (STRAIN 11)
120-147


PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
115-142
313-340
542-569


PUL06_HSVII
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
586-613


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
640-667


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
15-42
302-358
368-402


PUL08-HCMVA
HYPOTHETICAL PROTEIN ULB
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-47


PUL11_DV
HYPOTHETICAL PROTEIN BBFLI
EPSTEIN-BARR VIRUS (STRAIN B95-8)
15-42


PUL13_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALO VIRUS (STRAIN AD169)
347-374


PUL14_HSVEB
HYPOTHETICAL GENE 48 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
247-286


PUL14_VZVD
HYPOTHETICAL GENE 46 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
64-101


PUL16_HCMVA
HYPOTHETICAL PROTEIN UL16
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
81-112


PUL20_HCMVA
HYPOTH PRO UL20 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-61


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
44-71


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
380-407


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
34-61
204-231
362-389


PUL31_HCMVA
HYPOTHETICAL PROTEIN UL3I
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
167-194
254-284


PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1
345-375


PUL34_HSVII
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
116-143


PUL34_HSVSA
GENE 67 PROTEIN
HERPES VIRUS SAIMIR (STRAIN 11)
208-235


PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
112-139


PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS STRAIN AD169)
535-562


PUL37_HSVII
PROTEIN L/L37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
470-497
853-884


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AD4P)
715-749
987-






1014


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
31-65
685-737


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-134
485-532
719-746
976-








1003


PUL41_VZVD
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-364


PUL42_HSVII
DNA BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
231-258


PUL43_VZVD
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS STRAIN DUMAS)
129-156
312-349


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-148
448-485
763-790
802-853


PUL47_HSVII
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
488-515


PUL47_HSVIF
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
488-515


PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4
190-217


PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
159-186


PUL52_EBV
PROB DNA REPLICATION PROTEIN BSLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
185-212
787-814


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
193-220
943-970


PUL52_HSVSA
PROB DNA REP GENE 56 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
130-157


PUL52_VZVD
PROB DNA REP GENE 6 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
301-337


PUL59_HCMVA
HYPOTHETICAL PROTEIN UL59
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-101


PUL70_HCMVA
PROB DNA REP PROTEIN UL70
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-92


PUL73_HCMVA
UL73 GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
5-73


PUL73_HSVSA
HYPOTHETICAL GENE 53 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
9-36


PUL74_HCMVA
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
45-79


PUL87_EBV
HYPOTHETICAL PROTEIN B(C)RF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
409-436


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
536-563
729-768


PUL87_HSVSA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
582-609


PUL92_EBV
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
168-196


PUL92_HSVSA
HYPOTHETICAL GENE 31 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
92-122


PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
26-53
314-381


PUL95_HCMVA
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
37-71


PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
73-100
105-134


PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
4-31
443-477


PULB9_HCMVA
HYPOTHETICAL PROTEIN UL119
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
33-78


PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
90-124


PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176


PUNG_SPVKA
URACIL-DNA GLYCOSYLASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
81-115


PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
85-116
129-156


PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
85-116
129-156


PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
85-116


PUS09_HCMVA
HYPOTHETICAL PROTEIN HXLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
20-47


PUS14_HCMVA
HYPOTHETICAL PROTEIN HVLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
277-308


PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
191-218


PV121_ASFL5
LIS 121-1 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN L1557)
2-29


PV125_AMVLE
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
702-729


PV137_ASFL5
LIS 137 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN L1557)
2-29


PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
59-86


PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
496-560
945-972




VIRUS


PV16K_TRVPS
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PSG)
79-113


PVIA_BBMV
1A PROTEIN
BROAD BEAN MOTILE VIRUS
23-54
710-737
840-868


PVIA_BMV
1A PROTEIN
BROME MOSAIC VIRUS
22-58
384-411
836-863
892-919


PVIA_CCMV
1A PROTEIN
COWPEA CHLOROTIC MOTILE VIRUS
249-276


PVIA_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
11-38


PVIA_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
11-38
864-902


PVIA_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
11-38


PVIA_PSVJ
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
4-38
372-399


PVIA_TAV
1A PROTEIN
TOMATO ASPERMY VIRUS
11-38
271-298
376-403
857-884


PV25K_NPVAC
25 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
4-31




VIRUS


PV29K_PEBV
29.6 KD PROTEIN
PEA EARLY BROWNING VIRUS
140-170


PV29K_TRVSY
29 KD PROTEIN
TOBACCO RATTLE VIRUS
170-197


PV29K_TRVTC
29 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
48-75


PV2A_BDMV
2A PROTEIN
BROAD BEAN MOTTLE VIRUS
301-328


PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
178-205


PV2A_CMVFN
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
792-819


PV2A_PSVJ
2A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
325-352
717-751


PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS
313-340
722-756


PV30_HCMVE
30 KD MAJOR EARLY PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN EISENHARDT)
194-221


PV30_TRVTC
29.1 KB PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
130-160


PV33P_ADE41
33 KD PHOSPHOPROTEIN
HUMAN ADENOVIRUS TYPE 41
15-42


PV362_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
75-102


PV363_ASFB7
D′363 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
3-30
172-199


PV3A_BMV
3A PROTEIN
BROME MOSAIC VIRUS
11-38


PV3A_CMVFN
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
222-252


PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
217-252


PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
222-253


PV3A_CMVY
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Y)
222-253


PV3A_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
25-57




BEAUDETTE)


PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN UK/183/66)
29-56


PV3B_IBVB
3B PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
6-33




BEAUDETTE)


PV50K_BYDVP
50 KD PROTEIN
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
119-146


PV51K_BWYVF
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
113-147
424-451


PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1)
113-147
424-451


PV56K_PLRV1
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
124-151
431-472


PV56K_PLAVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
124-151
438-477


PV58K_BSMV
54 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
128-155


PV70K_PLAVI
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1)
110-140


PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
110-140


PV90K_AMYLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
107-134


PVA06_VACCC
PROTEIN A6
VACCINIA VIRUS (STRAIN COPENHAGEN)
157-216
250-277
283-310
314-355


PVA06_VACCV
PROTEIN A6
VACCINIA VIRUS (STRAIN WR)
156-213
249-276
282-309
313-354


PVA06_VARV
PROTEIN A6
VARIOLA VIRUS
157-216
250-277
283-310
314-355


PVA08_VACCC
PROTEIN A8
VACCINIA VIRUS (STRAIN COPENHAGEN)
176-206


PVA08_VARV
PROTEIN A8
VARIOLA VIRUS
176-206


PVA09_VARV
PROTEIN A9
VARIOLA VIRUS
60-95


PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
219-283


PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
220-284


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
440-467


PVA20_VACCC
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
8-67
330-337


PVA20_VARV
PROTEIN A20
VARIOLA VIRUS
8-67
330-357


PVA22_VACCC
PROTEIN A22
VACCINIA VIRUS (STRAIN COPENHAGEN)
45-72


PVA22_VARV
PROTEIN A22
VARIOLA VIRUS
56-83


PVA23_VACCC
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
95-144


PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
95-144


PVA28_VACCV
PROTEIN A28
VACCINIA VIRUS (STRAIN WR)
22-49


PVA28_VARV
PROTEIN A28
VARIOLA VIRUS
22-49


PVA30_VACCV
PROTEIN A30
VACCINIA VIRUS (STRAIN WR)
12-55


PVA31_VACCC
PROTEIN A31
VACCINIA VIRUS (STRAIN COPENHAGEN)
88-115


PVA31_VARV
PROTEIN A31
VARIOLA VIRUS
88-122


PVA34_VACCC
PROTEIN A34
VACCINIA VIRUS (STRAIN COPENHAGEN)
87-114


PVA34_VACCV
PROTEIN A34
VACCINIA VIRUS (STRAIN WR)
87-114


PVA34_VARV
PROTEIN A34
VARIOLA VIRUS
87-114


PVA36_VACCV
PROTEIN A36 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
120-155


PVA36_VARV
PROTEIN A36 PRECURSOR
VARIOLA VIRUS
127-154


PVA38_VACCC
PROTEIN A38
VACCINIA VIRUS (STRAIN COPENHAGEN)
44-81


PVA38_VACCV
PROTEIN A38
VACCINIA VIRUS (STRAIN WR)
44-81


PVA38_VARV
PROTEIN A38
VARIOLA VIRUS
44-91


PVA39_VACCC
PROTEIN A39
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-71
155-182


PVA39_VACCV
PROTEIN A39
VACCINIA VIRUS (STRAIN WR)
75-109
193-220


PVA43_VACCC
PROTEIN A43
VACCINIA VIRUS (STRAIN COPENHAGEN)
145-172


PVA43_VACCV
PROTEIN A43
VACCINIA VIRUS (STRAIN WR)
145-172


PVA43_VARV
PROTEIN A43
VARIOLA VIRUS
146-173


PVA47_VACCC
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
143-184


PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
143-184


PVA47_VARV
PROTEIN A47
VARIOLA VIRUS
142-184


PVA49_VACCC
PROTEIN A49
VACCINIA VIRUS (STRAIN COPENHAGEN)
61-91


PVA49_VACCV
PROTEIN A49
VACCINIA VIRUS (STRAIN WR)
61-91


PVA49_VARV
PROTEIN A49
VARIOLA VIRUS
61-91


PVA55_VACCC
PROTEIN A55
VACCINIA VIRUS (STRAIN COPENHAGEN)
55-82
126-156
435-462


PVA55_VACCV
PROTEIN A55
VACCINIA VIRUS (STRAIN WR)
55-82
126-156
435-462


PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS
22-49


PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
79-106


PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
79-106


PVAL3_SLCV
AL3 PROTEIN
SQUASH LEAF CURL VIRUS
101-128


PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
79-129


PVAT_CAMVC
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
22-70
93-129


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
22-70


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
22-70
93-129


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
22-70
93-129


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
22-70
93-129


PVAT_CAMVS
APHID TRANSMISSION PROTEIN

22-70
93-130


PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
36-70


PVAT_CERV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
102-138


PVAT_FMVD
APHID TRANSMISSION PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
52-82
103-130


PVB03_VACCV
PROTEIN B3
VACCINIA VIRUS (STRAIN WR)
108-135


PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
92-123
182-211
216-313
324-361


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
92-123
182-211
286-313
324-361


PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
89-127
182-211
286-313
324-361


PVB05_VACC0
PLAQUE-SIZE/HOST RANGE PRO PREC
VACCINIA VIRUS (STRAIN LC16MO)
254-284


PVB05_VACCC
PLAQUE-SIZE/HOST RANGE PRO PREC
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-284


PVB05_VACCL
PLAQUE-SIZE/HOST RANGE PRO PREC
VACCINIA VIRUS (STRAIN LISTER)
254-284


PVB05_VACCV
PLAQUE-SIZE/HOST RANGE PRO PREC
VACCINIA VIRUS (STRAIN WR)
254-284


PVB07_VACCV
PROTEIN B7 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
28-62


PVB08_VACCC
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
26-53


PVB08_VACCV
PROTEIN B8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
26-53


PVB11_VACCC
PROTEIN B11
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-54


PVB11_VACCV
PROTEIN B11
VACCINIA VIRUS (STRAIN WR)
5-38


PVB16_COWPX
IL-1 BIND PRO PRECURSOR
COWPOX VIRUS
113-140


PVB17_VACCC
PROTEIN B17
VACCINIA VIRUS (STRAIN COPENHAGEN)
258-285


PVB17_VACCV
PROTEIN B17
VACCINIA VIRUS (STRAIN WR)
258-285


PVB18_VACCC
PROTEIN B18
VACCINIA VIRUS (STRAIN COPENHAGEN)
337-375


PVB18_VACCV
PROTEIN B18
VACCINIA VIRUS (STRAIN WR)
337-375


PVB18_VARV
PROTEIN B18
VARIOLA VIRUS
337-378


PVB19_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
182-212


PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN I)
180-210


PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
180-210


PVB19_VARV
SURFACE ANTIGEN S PRECURSOR
VARIOLA VIRUS
180-210


PVB20_VACCC
PROTEIN B20
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-82


PVB21_VACCV
PROTEIN B21
VACCINIA VIRUS (STRAIN WR)
64-91


PVBL1_BGMV
BL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
120-147
248-275


PYBL1_CLVK
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
118-145


PVBL1_CLVN
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
118-145


PVBL1_PYMVV
BL1 PROTEIN
POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA)
120-147


PVC02_VACCC
PROTEIN C2
VACCINIA VIRUS (STRAIN COPENHAGEN)
403-432


PVC02_VACCV
PROTEIN C2
VACCINIA VIRUS (STRAIN WR)
41-71
405-432


PVC04_SFVKA
PROTEIN C4
SHOPE FIBROMA VIRUS (STRAIN KASZA)
209-236
484-515


PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-46


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
12-46


PVC04_VARV
PROTEIN C4
VARIOLA VIRUS
12-46


PVC05_SFVKA
HYPOTHETICAL PROTEIN C5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
85-125
152-179


PVC05_VACCC
PROTEIN C5
VACCINIA VIRUS (STRAIN COPENHAGEN)
38-65


PVC05_VACCV
PROTEIN C5
VACCINIA VIRUS (STRAIN WR)
38-65


PVC05_VARV
PROTEIN C5
VARIOLA VIRUS
36-66


PVC07_VACCV
PROTEIN C7
VACCINIA VIRUS (STRAIN WR)
80-111


PVC07_VARV
PROTEIN C7
VARIOLA VIRUS
80-111


PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-69
82-116
178-205
252-279
289-325
575-605


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
42-69
82-116
178-205
252-279
289-323
575-605


PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
136-180


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
136-163


PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
136-163


PVC13_SFVKA
PROTEIN C13
SHOPE FIBROMA VIRUS (STRAIN KASZA)
3-30
39-66
137-182
206-240


PVC17_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
111-152


PVC18_VACCC
PROTEIN C18/B24
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-74


PVC19_SPYKA
PROTEIN C19
SHOPE FIBROMA VIRUS (STRAIN KASZA)
56-97


PVC20_VACCC
PROTEIN C20/B26
VACCINIA VIRUS (STRAIN COPENHAGEN)
72-99


PVC22_VARV
PROTEIN C22/B28 HOMOLOG
VARIOLA VIRUS
299-326


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
847-874


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
136-170
355-382


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
769-799


PVCG3_NFVAC
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
133-165
199-248




VIRUS


PVCOM_ADE02
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 2
88-115


PVCOM_ADE05
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 5
87-114


PYD05_FOWP1
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
6-33
184-211
321-348


PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
240-267
333-360


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
240-267


PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
240-267


PVD09_VACCC
PROTEIN D9
VACCINIA VIRUS (STRAIN COPENHAGEN)
123-150


PVD09_VACCV
PROTEIN D9
VACCINIA VIRUS (STRAIN WR)
123-150


PVD09_VARV
PROTEIN D9
VARIOLA VIRUS
123-160


PVD10_SFVKA
PROTEIN D10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
18-52


PVDBP_CERV
DNA-BINDING PROTEIN
CARNATION ETCHED RING VIRUS
2-35


PVE02_VARV
PROTEIN E2
VARIOLA VIRUS
282-322


PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
89-116
437-464


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
89-116
437-464


PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
89-116
367-394
437-464


PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
60-87


PVE1_HPV2A
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
21-48


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
180-207


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
103-130


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
55-89


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
25-59


PVE1_HPV47
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
146-173


PVE1_HPV57
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
21-48


PVE26_NPVAC
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
72-113




VIRUS


PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN
5-34




KANSAS)


PVE2_HPV05
PROBABLE E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5
17-51


PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 13
157-184
334-361


PVE2_HPV16
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 16
61-105
312-342


PVE2_HPV15
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 18
313-340


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 1A
159-186


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 2A
159-193


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 33
304-331


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
158-192
327-354


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
7-34
323-357


PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 47
17-52
143-175
276-303


PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 51
137-184


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 57
166-193


PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
2-36
309-336


PVE2_HPV5B
PROBABLE E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
17-51


PVE2_PAPVE
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMA VIRUS
120-150


PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
267-294
327-362


PVE4_HPV05
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5
202-229


PVE4_HPV11
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
81-108


PVE4_HPV16
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
66-93


PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
59-86


PVE4_HPV31
PROBABLE EA PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 31
75-102


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-97


PVE4_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
202-229


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 11
30-60


PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 6B
30-60


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 6C
30-60


PVE5_HPV35
PROBABLE E5 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 35
27-54


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
11-41


PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMA VIRUS TYPE 1
35-62


PVE6_HPV18
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
75-102


PVE6_HPV31
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
69-96


PVE6_HPV39
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
71-102


PVE6_HPV41
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 41
119-146


PVE6_HPV45
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 45
75-102


PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 51
72-99


PVE6_HPVME
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE ME180
71-102


PVE94_NPVAC
EARLY 94 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
620-647




VIRUS


PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA N1 GRANULOSIS VIRUS
411-438


PVENV_DHV11
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61)
318-366


PVENV_EAV
PROBABLE ENVELOPE PROTEIN
EQUINE ARTERITIS VIRUS
120-147


PVENV_THOGV
ENVELOPE GLYCOPROTEIN PRECURSOR
THOGOTO VIRUS
313-347


PVF03_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
71-110
185-212


PYF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
71-110
185-212


PVF05_VACCP
36 KD MAJOR MEMBRANE PRO PRECURSO
VACCINIA VIRUS (STRAIN L-IVP)
33-60


PVF05_VACCV
36 KD MAJOR MEMBRANE PRO PRECURSO
VACCINIA VIRUS (STRAIN WR)
33-60


PVF06_VARV
PROTEIN F6
VARIOLA VIRUS
10-44


PVF11_VACCC
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
274-321


PVF1_VACCP
PROTEIN F11
VACCINIA VIRUS (STRAIN L-IVP)
270-317


PVF11_VARV
PROTEIN F11
VARIOLA VIRUS
274-321


PVF12_VACCC
PROTEIN F12
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-37
113-140
554-581


PVFI2_VACCP
PROTEIN FI2
VACCINIA VIRUS (STRAIN L-IVP)
10-37
113-140
554-581


PVF12_VARV
PROTEOM F12
VARIOLA VIRUS
20-37
202-236
554-582


PVF16_VACCC
PROTEIN F16
VACCINIA VIRUS (STRAIN COPENHAGEN)
35-62
152-179


PVF16_VACCP
PROTEIN F16
VACCINIA VIRUS (STRAIN L-IVP)
35-62
152-179


PVF16_VARV
PROTEIN F16
VARIOLA VIRUS
35-62
149-179


PVFP4_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
146-173


PVFUS_ORFNZ
10 KD FUSION PROTEIN
ORF VIRUS (STRAIN NZ2)
59-86


PVFUS_VACCC
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-64


PVFUS_VACCY
KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
37-64


PVG01_VACCC
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
225-252
301-335


PYG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN WR)
164-191
240-274


PYG01_VARV
PROTEIN G1
VARIOLA VIRUS
225-232
301-335


PVG01_VACCV
ISATIN-B-TSC DEP PROTEIN
VACCINIA VIRUS (STRAIN WR)
96-123


PVG02_VARV
ISATIN-B-TSC DEP PROTEIN
VARIOLA VIRUS
96-123


PVG03_HSVED
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
146-176


PVG01_HSVEK
GENE 3 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
146-176


PVG05_VACCC
PROTEIN G5
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-75
131-161
225-289
355-389


PVG05_VARV
PROTEIN G5
VARIOLA VIRUS
48-75
124-161
255-289
355-389


PVG07_HSVI1
HYPOTH GENE 7 MEMB PRO
ICTALURID HERPESVIRUS 1
71-98


PVG09_VACCC
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN)
308-338


PVG09_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN WR)
271-301


PVG09_VARV
PROTEIN F1
VARIOLA VIRUS
308-338


PVG12_SPVIR
GENE 12 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
11-45


PVG17_HSVI1
HYPOTHETICAL GENE 17 PROTEIN
ICTALURID HERPESVIRUS 1
177-204


PVG18_HSVI1
HYPOTHETICAL GENE 18 PROTEIN
ICTALURID HERPESVIRUS 1
174-208


PVG1_SPVIR
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
260-287


PGV1_SPV4
CAPSID PROTEIN
SPIROPLASMA VIRUS 4
287-314
383-410


PVG22_HSVI1
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1
373-400
581-622
668-705
766-824


PVG24_HSVI1
HYPOTHETICAL GENE 24 PROTEIN
ICTALURID HERPESVIRUS 1
31-58


PVG28_HSVI1
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1
253-290
497-528


PVG2R_AMEPV
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
33-64
91-118


PVG2_SPV1R
GENE 2 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
285-326


PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4
146-173
175-205
262-310


PVG34_HSVI1
HYPOTHETICAL GENE 34 PROTEIN
ICTALURID HERPESVIRUS 1
95-122


PVG37_HSVI1
HYPOTHETICAL GENE 37 PROTEIN
ICTALURID HERPESVIRUS 1
442-469


PVG39_HSVI1
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1
651-678
1088-






1115


PVG3L_AMEPV
HYPOTHETICAL GJL PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
2-29


PVG3_SPV1R
GENE 3 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
15-49


PVG1_SPV4
GENE 3 PROTEIN
SPIROPLASMA VIRUS 4
18-52
87-148


PVG45_HSVSA
HYPOTHETICAL GENE 45 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
138-165


PVG46_HSVI1
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1
142-169
346-373
897-924
973-








1007


PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
360-394


PVG4R_AMEPV
G4R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
4-31


PVG4_SPV1R
GENE 4 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
116-146


PVG51_HSVI1
HYPOTH GENE 51 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1
34-61
87-114


PVG52_HSVSA
HYPOTHETICAL GENE 52 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
47-74


PVG56_HSVI1
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1
582-609


PVG5_SPV1R
GENE 5 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
65-92


PVG5_SPV4
GENE 5 PROTEIN
SPIROPLASMA VIRUS 4
56-83


PVG63_HSVI1
HYPOTHETICAL GENE 63 PROTEIN
ICTALURID HERPESVIRUS 1
550-584


PVG64_HSVI1
HYPOTHETICAL GENE 64 PROTEIN
ICTALURID HERPESVIRUS 1
477-504


PVG65_HSVI1
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1
1213-





1254


PVG66_HSVI1
HYPOTHETICAL GENE 66 PROTEIN
ICTALURID HERPESVIRUS 1
362-406


PVG67_HSVI1
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1
1342-





1369


PVG68_HSVI1
HYPOTHETICAL GENE 68 PROTEIN
ICTALURID HERPESVIRUS 1
261-288


PVG72_HSVI1
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1
447-481


PVG75_HSVI1
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1
388-472


PVG76_HSVI1
HYPOTHETICAL GENE 76 PROTEIN
ICTALURID HERPESVIRUS 1
200-227


PVG7_SPV4
GENE 7 PROTEIN
SPIROPLASMA VIRUS 4
14-44


PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
1230-
2408-





1260
2435


PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
399-426

1022-
1278-







1084
1305


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
399-426
642-676
1022-
1278-







1084
1305


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
770-797
809-875
1056-







1112


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN WILD TYPE 4)
643-684
1030-






1092


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59)
36-63
591-632
978-







1040


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHMV/VARIANT
643-684
1030-




CL-2)

1092


PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
502-543
889-951


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
692-733
1072-
1353-




CORONAVIRUS (STRAIN FS772


1145
1389


PVGL2_CVPM1
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-110
692-733
1069-
1353-




CORONAVIRUS (STRAIN MILLE


1145
1389


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
73-107
690-731
1067-
1351-




CORONAVIRUS (STRAIN PUR46


1143
1387


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-107
690-731
1067-
1351-




CORONAVIRUS (STRAIN PURD


1143
1387


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN
468-509
1129-




86/137004/BRITISH ISOLAT

1165


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
468-509
845-921
1129-







1165


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
69-107
690-731
1067-
1353-




CORONAVIRUS (STRAIN NEB72


1143
1387


PVGL2_EBV
PROBABLE MEMBRANE GLYCOPROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
68-102


PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
180-233
454-481
709-736
1072-
1356-








1148
1392


PVGL2_IBV6
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82)
809-816
876-903
1057-







1091


PVGL2_IBV8
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
808-835
875-902
1056-




BEAUDETTE)


1090


PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D274)
809-836
876-903
1057-







1091


PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
808-835
875-902
1056-







1090


PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41)
808-835
875-902
1056-







1090


PVGLB_EBV
GLYCOPROTEIN GP110 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
95-122
631-658


PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
25-88
397-424
440-467
851-878


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
50-88
397-424
435-462
852-879


PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
427-454


PVGLB_HSVB2
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
447-474


PVGLB_HSVE1
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HSV25A)
443-470
934-961


PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 4
486-513
616-643


PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
443-470
934-961


PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
443-470
934-961


PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D)
443-470
933-960


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
93-120
352-379


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
381-408
441-475


PVGLC_HSV11
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
469-510


PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
469-510


PVGLC_HSVEB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1
124-151


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
295-322


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
295-322


PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-148


PVGLF_BRSVA
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
38-65
154-202
216-243
442-469
486-531


PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN
38-65
154-202
216-243
444-471
488-533




COPENHAGEN)


PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94)
38-65
154-202
216-243
444-471
488-533


PVGLF_CDVO
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
252-293
340-367


PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
38-65
154-203
442-471
488-515




B/STRAIN 18537)


PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
38-65
154-202
213-243
488-518


PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
38-65
154-202
216-243
444-471
488-515




A/STRAIN LONG)


PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSS-2)
38-65
154-202
213-243
442-471
488-518


PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAINS EDMONSTON AND HALLE)
228-262


PVGLF_MEASI
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA)
231-265


PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
228-262


PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
20-54
447-486


PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
20-54
447-486


PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
20-54
447-486


PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
151-178
426-511


PVGLF_NDVA
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
151-178
426-512




VICTORIA/32)


PVGLF_NDVB
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
151-178
426-512


PVGLF_NDVH3
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN HERR/33)
151-178
426-512


PVGLF_NDVH4
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47)
151-178
426-512


PVGLF_NDVI
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)
151-178
426-512


PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN LAS/46)
151-178
192-219
426-512


PVGLF_NDVM
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)
151-178
437-512


PVGLF_NDVQ
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)
151-178
433-512


PVGLF_NDVT
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS)
151-178
426-512


PVGLF_NDVTG
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G.B./48)
151-178
426-512


PVGLF_NDVU
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
151-178
426-512


PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
36-63
221-262
309-336


PVGLF_PI1HC
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
147-174
210-266


PVGLF_PI2H
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528


PVGLF_PI2HG
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN GREER)
90-117
141-175
238-266
483-528


PVGLF_PI2HT
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
90-117
141-175
238-266
483-528


PVGLF_PI3B
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
115-182
207-241
459-497


PVGLF_PI3H4
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIII 47885)
115-182
207-241
457-497


PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN KABETE O)
224-265
458-485


PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN L)
224-265
458-506


PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
122-149
211-245
480-507


PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
122-149
211-245
480-507


PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
122-149
211-245
480-507


PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
122-149
211-245
480-507


PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
122-149
211-245
480-507


PVGLF_SV41
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 41
144-185
241-269
459-596


PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3)
137-171
417-444


PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS
122-161
193-200
457-484


PVGLG_BEFV
SPIKE GLYCOPROTEIN PRECURSOR
BOVINE EPHEMERAL FEVER VIRUS
523-557


PVGLG_BRSVC
MAJOR SURFACE GLYCOPROTEIN G
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN
92-123




COPENHAGEN)


PVGLG_HRSV1
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
63-93




B/STRAIN 18537)


PVGLG_HRSV4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN
66-107




RSB5857)


PVGLG_HRSV5
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN
243-273




RSB6190)


PVGLG_HRSV8
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
66-93




B/STRAIN 8/60)


PVGLG_HSVE4
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 4
271-298


PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
383-410


PVGLG_RABVT
SPIKE GLYCOPROTEIN PRECURSOR
RABIES VIRUS (STRAIN STREET)
489-519


PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS (SEROTYPE
472-499




INDIANA/STRAIN GLASGOW)


PVGLH_EBV
GLYCOPROTEIN GP85 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
549-576
619-648


PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
107-136
270-297


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
106-135


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
62-89
360-403


PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
388-415


PVGLI_HCMVA
IE GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-111


PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
512-446
914-941
1128-







1255


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
913-950


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
340-374
504-535
682-709


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
945-972


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
73-100
693-720


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
75-102


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
75-102


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
75-102


PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS
628-655
1069-






1101


PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
69-96


PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
72-110


PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
72-110


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
513-540
693-720


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
73-100
513-540
694-721


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11)
73-100
513-540
694-721


PVGLN_BEFV
NONSTRUCT GLYCOPRO GNS PRECURSOR
BOVINE EPHEMERAL FEVER VIRUS
523-564


PVGLP_BEV
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS
48-82
1145-
1184-
1505-






1179
1211
1532


PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN PRECURSO
JUNIN ARENAVIRUS
14-41


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSO
LASSA VIRUS (STRAIN GA391)
86-113


PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN PRECURSO
MOPEIA VIRUS
86-113
316-346


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSO
PICHINDE ARENAVIRUS
334-375


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSO
TACARIBE VIRUS
109-136
315-350


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSO
TACARIBE VIRUS (STRAIN V5)
303-338


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSO
TACARIBE VIRUS (STRAIN V7)
302-337


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSO
TACARIBE VIRUS (STRAIN TRVL 11598)
303-338


PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
192-221


PVGP8_EBV
PROBABLE MEMBRANE ANTIGEN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-149


PVGP_EBOV
STRUCTURAL GLYCOPROTEIN PRECURSO
EBOLA VIRUS
280-314


PVGP_MABVM
STRUCTURAL GLYCOPROTEIN PRECURSO
MARBURG VIRUS (STRAIN MUSOKE)
559-589
619-646


PVGP_MABVP
STRUCTURAL GLYCOPROTEIN PRECURSO
MARBURG VIRUS (STRAIN POPP)
559-589
619-646


PVH05_VACCC
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
132-166


PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
132-166


PVH05_VARV
PROTEIN H5
VARIOLA VIRUS
64-91
150-184


PVHEL_LSV
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS
130-160


PVHRP_VACCC
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
241-275


PVHRP_VACCV
HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
241-275


PVI01_VACCC
PROTEIN 11
VACCINIA VIRUS (STRAIN COPENHAGEN)
90-117
153-180


VI01_VARV
PROTEIN 11
VARIOLA VIRUS
90-117
153-180


VI03_VACCC
PROTEIN 13
VACCIN1A VIRUS (STRAIN COPENHAGEN)
160-190


VI03_VACCV
PROTEIN 13
VACCINIA VIRUS (STRAIN WR)
160-190


VI03_VARV
PROTEIN 13
VARIOLA VIRUS
160-190


VI08_VACCC
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN COPENHAGEN)
290-317
548-575
593-632


VI08_VACCV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN WR)
290-317
548-575
593-632


VI08_VARV
PUTATIVE RNA HELICASE 18
VARIOLA VIRUS
290-317
548-575
593-632


VIE1_MCMVS
IMMEDIATE-EARLY PROTEIN 1
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
261-288


VIE2_NPVOP
IMMEDIATE-EARLY PROTEIN IE-2
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
355-385




VIRUS


VIEN_NPVAC
IE-REG PROTEIN IE-N
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
217-325
343-400




VIRUS


VIF_HVIRH
VIRION INFECTIVITY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT
62-89




ISOLATE)


VIF_SIVAI
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/CLONE
2-36




GRI-1)


VIMP_HSVEB
PROB INTEGRAL MEMBRANE PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
147-174


VIMP_HSVSA
INTEGRAL MEMBRANE PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
80-107


VINT_SSV1
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
73-100


VJ01_VACCC
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-56


VJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
22-56


VJ01_VARV
PROTEIN J1
VARIOLA VIRUS
22-56


VL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN
331-383




KANSAS)


VL1_FPVL
PROBABLE L1 PROTEIN
AVIAN PAPILLOMA VIRUS FPV-L
38-65


VL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
354-392


VL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
183-210


VL1_HPV33
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
19-46


VL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
345-372


VL1_HPV51
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 51
19-46


VL1_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
45-72


VL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
407-445


VL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
415-442


VL3_REOVD
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 31 STRAIN DEARING)
330-357


VL3_REOVL
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 1/STRAIN LANG)
330-357


VL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS
146-180
625-652


PVM1_REOVL
MINOR VIRION STRUCTURAL PROTEIN MU
REOVIRUS (TYPE 1/STRAIN LANG)
290-317


PVM21_REOVD
MAJOR VIRION STRUC PROTEIN MU-1/MU-
REOVIRUS (TYPE 3/STRAIN DEARING)
625-662


PVM22_REOVD
MAJOR VIRION STRUC PROTEIN MU-1/MU-
REOVIRUS (TYPE 3/STRAIN DEARING)
624-661


PVM2_REOVJ
MAJOR VIRION STRUC PROTEIN MU-1/MU-
REOVIRUS (TYPE 2/STRAIN D5/JONES)
624-661


PVM3_REOVD
MAJOR NONSTRUCTURAL PROTEIN MU-N
REOVIRUS (TYPE 3/STRAIN DEARING)
159-186
343-370
456-483
631-691


PVMA2_BRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
124-152


PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
124-151


PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908)
219-246


PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
219-246


PVMAT_INCIJ
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
151-185


PVMAT_NDVA
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
247-274




VICTORIA/32)


PVMAT_P12HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
96-123


PVMAT_P13B
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
201-231


PVMAT_P13H4
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
201-231


PVMAT_SV41
MATRIX PROTEIN
SIMIAN VIRUS 41
323-353


PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONA VIRUS (STRAIN MEBUS)
175-209


PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONA VIRUS
175-209


PVME1_IBV6
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82)
21-48
184-218


PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
21-48
184-218




BEAUDETTE)


PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECIIOUS BRONCHITIS VIRUS (STRAIN
21-48
184-218




BEAUDETTE M42)


PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
184-218


PVMP_CAMVC
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
220-254
273-324


PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/11)
29-56
220-254
273-324


PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
227-254
273-324


PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
220-254
273-324


PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
220-254
273-324


PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
220-254
273-324


PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
26-53
100-127


PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
4-31
78-118


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
294-328


PVMT1_DHVII
MATRIX PROTEIN 1
DHORI VIRUS (STRAIN INDIAN/1313/61)
38-65
237-264


PVMT8_MYXVL
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
163-190


PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
465-492


PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
83-113


PVNCN_PAVBO
PROBABLE NONCAPSID PROTEIN NP1
BOVINE PARVOVIRUS
149-176


PVNCS_ADVG
NONCAPSID PROTEIN NS-1
ALEUTIAN MINK DISEASE PARVOVIRUS (STRAIN G)
86-148


PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS (STRAIN GKV 002 002)
14-41
279-339
487-517
585-612
780-817
821-848


PVNCS_MUMIM
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS (STRAIN MVM1)
35-62
262-289


PVNCS_MUMIV
NONCAPSID PROTEIN NS-1
MURINE MINUTE VIRUS
35-62
262-289


PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
HUMAN PARVOVIRUS B19
236-270


PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HAMSTER PARVOVIRUS H1
35-62


PVNCS_PAVPN
NONCAPSID PROTEIN NS-1
PORCINE PARVOVIRUS (STRAIN NADL-2)
24-55
169-196
316-346


PVNS1_EHDV2
NONSTRUCTURAL PROTEIN NS1
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE
411-438




2/STRAIN ALBERTA)


PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77)
171-198


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
171-198


PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
171-198


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
171-198


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24)
168-195


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
171-198


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
171-198


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
171-198


PVNS1_IALEI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
171-198


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76)
171-198


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79)
171-198


PVNS1_IAP13
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/358/79)
171-198


PVNS1_IATXB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM-
171-198




GLILIT/1492-B/82)


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63)
171-198


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72)
171-198


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
171-198


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
171-198


PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/PA/79)
171-198


PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
87-114


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40)
51-78


PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
51-78


PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS (STRAIN C/JJ/50)
71-98


PVNS3_CVPFS
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
9-36




CORONAVIRUS (STRAIN FS772


PVNS4_CVH22
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
9-36


PVNS4_RSV
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
6-40


PVNS7_CVCAE
NONSTRUCTURAL PROTEIN 7
CANINE ENTERIC CORONAVIRUS (STRAIN K378)
11-45


PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683)
8-42


PVNS7_CVPFS
NONSTRUCTURAL PROTEIN 7
PROCINE TRANSMISSIBLE GASTROENTERITIS
34-61




CORONAVIRUS (STRAIN FS772


PVNS7_CVPPU
NONSTRUCTURAL PROTEIN 7
PORCINE TRANSMISSIBLE GASTROENTERITIS
34-61




CORONAVIRUS (STRAIN PUR1)


PVNS7_CVPRM
NONSTRUCTURAL PROTEIN 7
PORCINE RESPIRATORY CORONAVIRUS
34-61


PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
8-42


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN CI-14/83)
41-75


PVNSC_PI3HA
NONSTRUCrURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
58-99


PVNSM_INSV
NONSTRUCTURAL PROTEIN NS-M
IMPATIENS NECROTIC SPOT VIRUS
262-296


PVNST_BUNLC
NONSTRUCTURAL PROTEIN NS-S
BUNYAVIRUS LA CROSSE
57-84


PVNST_TOSV
NONSTRUCTURAL PROTEIN NS-S
TOSCANA VIRUS
146-180


PVNUC_EBOV
NUCLEOPROTEIN
EBOLA VIRUS
131-369


PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANAS
378-405




ACUTA/PRIMORJE/695/76)


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
378-405


PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78)
378-405


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78)
378-405


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
378-405


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/AUSTRALIA/749/80)
378-405


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/BEIJING/1/78)
378-405


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/)
378-405


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/62)
378-405


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/HONG KONG/7/75)
378-405


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74)
378-405


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN AA/DUCK/MANITOBA/1/53)
378-405


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/NEW
378-405




ZEALAND/31/76)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/2/60)
378-405


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55)
378-405


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
378-405


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
378-405


PVNUC_IAFFD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
378-405




VIRUS/DOBSON/‘DUTCH’/27)


PVNUC_IAFFR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
378-405




VIRUS/ROSTOCK/34)


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GREY
378-405




TEAL/AUSTRALIA/2/79)


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/5/77)
378-405


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
378-405


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1824/78)
378-405


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/1815/79)
378-405


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84)
378-405


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/GULL/MASSACHUSETTS/26/80)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MINNESOTA/945/80)
378-405


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HICKOX/40)
378-405


PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/JILLIN/1/89)
378-405


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/1416/73)
378-405


PVNUC_IANM1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63)
378-405


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68)
378-405


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83)
378-405


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
378-405


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
378-405


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
378-405


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
378-405


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/MALLARD/ASTRAKHAN/244/82)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW
378-405




YORK/6750/78)


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
378-405


PVNUC_IANEJ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NEW JERSEY/8/76)
378-405


PVNUC_LANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
378-405


PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/OHIO/4/83)
378-405


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73)
378-405


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
378-405


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW
378-405




JERSEY/47/85)


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SEAL/MASSACHUSETTS/1/80)


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SHEARWATER/AUSTRALIA/72)


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
378-405


PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEAL/ICELAND/29/80)
378-405


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TURKEY/MINNESOTA/1661/81)


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/ONTARIO/1732/66)
378-405


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61)
378-405


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72)
378-405


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77)
378-405


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
378-405


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
378-405


PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/VICTORIA/5168)
378-405


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84)
378-405


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/PACIFIC
378-405




OCEAN/19/76)


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
378-405


PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88)
378-405


PVNUC_1AZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/29/37)
378-405


PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/41/49)
378-405


PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/CAMBRIDGE/1/35)
378-405


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/DANDONG/9/83)
378-405


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/GERMANY/2/81)
378-405


PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/6/76)
378-405


PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
378-405


PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/127/82)
378-405


PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
378-405


PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31)
378-405


PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46)
378-405


PVNUC_KAZJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/437/76)
378-405


PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/2/79)
378-405


PVNUC_IAZJ3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/141/81)
378-405


PVNUC_IAZJ4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89)
378-405


PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42)
378-405


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54)
378-405


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/NETHERLANDS/12/85)


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35)
378-405


PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81)
378-405


PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77)
378-405


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57)
378-405


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/61)
378-405


PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
99-126
416-443
451-478


PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
366-407


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
366-407


PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-37
109-138
581-608


PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
7-37
109-138
581-608


PVOR1_FXMV
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
1023-





1050


PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS
996-
1527-





1023
1561


PVOR1_PMV
I76 KD PROTEIN
PAPAYA MOSAIC POTEXVIRUS
948-978
1481-






1532


PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN)
597-627


PVOR1_PVX
165 KD PROTEIN
POTATO VIRUS X
698-725
1017-






1044


PVOR1_PVXX3
165 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
698-725
1017-






1044


PVOR1_SMYEA
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS
312-342
691-721


PYP10_NPVAC
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
7-41




VIRUS


PYP10_NPVOP
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
7-48




VIRUS


PVP10_NPVSE
P10 PROTEIN
SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS VIRUS
6-33
37-64




(STRAIN US)


PVP10_RGDV
NONSTRUCTURAL PROTEIN PNS10
RICE GALL DWARF VIRUS
205-252


PVP10_WTV
NONSTRUCTURAL PROTEIN PNS10
WOUND TUMOR VIRUS
151-181
227-254


PVP11_RDV
NONSTRUCTURAL PROTEIN PNS13
RICE DWARF VIRUS
53-80


PVP12_WTV
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS
81-108


PVP18_WTVNJ
NONSTRUCTURAL PROTEIN PNS12
WOUND TUMOR VIRUS (STRAIN NJ)
81-108


PVP19_AMCV
CORE PROTEIN P19
ARTICHOKE MOTTLED CRINKLE VIRUS
73-100


PVP19_TBSVC
CORE PROTEIN P19
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
73-100


PVP23_HSVSA
PROBABLE CAPSID PROTEIN VP23
HERPESVIRUS SAIMIRI (STRAIN 11)
2-29


PVP26_HSVEB
CAPSID PROTEIN VP26
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
36-63


PVP26_HSVSA
CAPSID PROTEIN VP26
HERPES VIRUS SAIMIRI (STRAIN 11)
48-75


PVP2_AHSV4
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN
277-304
410-437
632-662
907-934




VACCINE)


PVP2_BTV13
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
815-846


PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
898-925


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH
119-146




AFRICA)


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
72-103
415-453


PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
39-94
521-553


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
39-94
524-554


PVP2_ROTHW
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
70-101
533-567


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
52-99
128-156
518-545
705-746


PVP2_ROTSI
RNA-BINDING PROTEIN VP2
SIMIAN II ROTAVIRUS (STRAIN SA11)
36-96


PVP30_ASFE7
PHOSPHOPROTEIN P30
AFRICAN SWINE FEVER VIRUS (STRAIN E-75)
39-75


PVP32_ASFB7
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
39-75


PVP35_EBOV
POLYMERASE COMPLEX PROTEIN VP35
EBOLA VIRUS
81-119


PVP35_MABVM
POLYMERASE COMPLEX PROTEIN VP35
MARBURG VIRUS (STRAIN MUSOKE)
80-107
211-258


PVP35_MABVP
POLYMERASE COMPLEX PROTEIN VP35
MARBURG VIRUS (STRAIN POPP)
80-107
231-258


PVP35_NPVAC
EARLY 35 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
270-297




VIRUS


PVP35_NPVBM
EARLY 35 KD PROTEIN
BOMBYX MORJ NUCLEAR POLYHEDROSIS VIRUS
68-102


PVP35_VACCV
IMMUNODOM ENV PRO P35
VACCINIA VIRUS (STRAIN WR)
178-205


PVP39_NPVAC
MAJOR CAPSID PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
134-161
264-291




VIRUS


PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
263-290




VIRUS


PVP3_AHSV4
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN
132-159




VACCINE)


PVP3_BTV10
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
214-252


PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
214-252


PYP3_BTVIA
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
214-252


PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
209-243
798-832


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE
798-832




2/STRAIN AUSTRAL


PVP3_GFLV
P3 PROTEIN
GRAPEVINE FANLEAF VIRUS
99-133


PVP3_ROTPC
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
39-66
329-384


PVP3_ROTS1
INNER CORE PROTEIN VP3
SIMIAN II ROTAVIRUS (STRAIN SA11)
26-67
350-377
451-497
619-692


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
440-470


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11)
205-232
344-372


PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN
515-549




THORNE V882)


PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
174-208
495-522


PVP41_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11)
8-35
589-619


PVP42_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11)
8-35
584-622


PVP4A_VACCC
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-75


PVP4A_VACCV
MAJOR CORE PROTEIN P4A PRECURSOR
VACCINIA VIRUS (STRAIN WR)
46-75


PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
48-75


PVP4B_FOWPV
MAJOR CORE PROTEIN P4B PRECURSOR
FOWLPOX VIRUS
80-110


PVP4B_VACCC
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-37


PVP4B_VACCV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN WR)
7-37


PVP4B_VARV
MAJOR CORE PROTEIN P4B PRECURSOR
VARIOLA VIRUS
7-37


PVP4_BTV10
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
34-61
576-603


PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
34-61
576-603


PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
34-61
576-603


PVP4_BTV2A
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS (STRAIN NCDV-
552-622




LINCOLN)


PVP4_NCDV
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS SEROTYPE 6/STRAIN B641)
595-629


PVP4_ROTB4
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN C486)
8-35
584-622


PVP4_ROTBC
OUTER CPASID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN UX)
595-629


PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS (STRAIN H-2)
112-146
235-269
552-629


PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
5-32


PVP4_ROTG1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
8-35
572-628


PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
8-35
279-306
565-621


PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
8-35
112-139
584-629


PVP4_R0TH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
8-35
279-306
565-621


PVP4_ROTIID
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
8-35
271-306
565-621


PVP4_ROT1U
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN K8)
8-35
111-138


PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN KU)
8-35
77-104
279-306
577-621


PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN L26)
8-35
279-306
565-621


PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
8-35
572-610


PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13
8-35
573-628


PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
8-35
577-621


PVP4_ROTHR
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV)
8-38
105-135
235-262


PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3)
8-35
572-627


PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70)
8-35
279-306
590-617


PVP4_ROTHW
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
8-35
577-621


PVP4_ROTP5
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
112-146
584-625


PVP4_ROTPC
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
5-33
115-161
293-320


PVP4_ROTPG
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
8-35
572-628


PVP4_ROTPY
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN YM)
8-35
112-146
584-625


PVP4_ROTRH
OUTER CAPSID PROTEIN VP4
RHESUS ROTAVIRUS
8-38
584-622


PVP4_ROTSF
OUTER CAPSID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11-FEM)
8-35
589-619


PVP4_ROTSS
OUTER CAPSID PROTEIN VP4
SIMIAN II ROTAVIRUS (STRAIN SA11-SEM)
8-35
130-157
584-622


PVP4_WTV
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS
28-62


PVP5_AHSV4
OUTER CAPSID PROTEIN VP5
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN
113-183
191-218




VACCINE)


PVP5_BTV10
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
53-80
99-126


PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
53-80
92-126


PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
53-80


PVP5_BTVIA
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
53-80
89-126


PVP5_BTVIS
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH
53-80
92-126
148-182




AFRICA)


PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
53-80
89-126


PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
31-80
191-218
399-426


PVP5_WTV
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS
648-675


PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
161-193


PVP61_MRDV
PROB NONSTRUCT 41.0 KD PRO
MAIZE ROUGH DWARF VIRUS
153-202


PVP61_NPVAC
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
36-63




VIRUS


PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
157-189


PVP64_NPVOP
MAJOR ENV GLYCOPRO PRECURSOR
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
45-72




VIRUS


PVP67_NPVAC
MAJOR ENV GLYCOPRO PRECURSOR
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
44-81




VIRUS


PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
157-189


PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
157-189


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
157-189


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH
161-193




AFRICA)


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
133-172


PVP6_RDV
STRUCTURAL PROTEIN P6
RICE DWARF VIRUS
10-37
354-381


PVP74_NPVAC
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
413-440




VIRUS


PVP75_HSVSA
PROBABLE MEMBRANE ANTIGEN 75
HERPES VIRUS SAIMIRI (STRAIN 11)
181-208
929-977


PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
44-78
370-397




VIRUS


PVP7_EHDV1
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
16-43


PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS
458-485


PVP80_NPVAC
CAPSID PROTEIN P80
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
101-142
240-298




VIRUS


PVP87_NPVOP
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
132-159




VIRUS


PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
105-132


PVP8_FOWPV
STRUCTURAL PROTEIN VP8 PRECURSOR
FOWLPOX VIRUS
211-238


PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS
29-56
112-143


PVP9_RDV
NONSTRUCTURAL PROTEIN PNS9
RICE DWARF VIRUS
197-224


PVP9_WTV
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS
22-49


PVP9_WTVNJ
STRUCTURAL PROTEIN P9
WOUND TUMOR VIRUS (STRAIN NJ)
22-49


PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
196-223




VIRUS


PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
127-186
238-263




VIRUS


PVPRT_ADEM1
ENDOPROTEASE
MOUSE ADENOVIRUS TYPE
167-194


PVPU_HVIA2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (ARV2/SF2
3-31




ISOLATE)


PVPU_HVIB1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (B1110 AND
5-48




IIXB3 ISOLATES)


PVPU_HVIB8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (B118 ISOLATE)
21-48


PVPU_HVIBN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (BRAIN
22-49




ISOLATE)


PVPU_HVIBR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (BRU ISOLATE)
3-48


PVPU_HVIC4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (CDC-451
3-30




ISOLATE)


PVPU_HVIEL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (ELI ISOLATE)
6-33


PVPU_HVIH2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE (HXB2 ISOLATE)
5-48


PVPU_HVIJ3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JH3 ISOLATE)
2-29


PVPU_HVIJR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF
22-49




ISOLATE)


PVPU_HVIMA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL
5-32




ISOLATE)


PVPU_HVIND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK
6-33




ISOLATE)


PVPU_HVIPV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22
5-48




ISOLATE)


PVPU_HYISI
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (SF162
22-49




ISOLATE)


PVPU_SIVCZ
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
51-78


PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS
64-94


PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS
1051-1078


PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
6-43


PVS06_ROTGA
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
114-144


PVS06_ROTGI
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
28-55


PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS
9-44


PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
9-44


PVS07_ROTBJ
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
2-29


PVS07_ROTBU
NONSTRUCTURAL PROTEIN NCVP3
BOVINE ROTAVIRUS (STRAIN UK)
91-146
199-236


PVS07_ROTP5
NONSTRUCTURAL PROTEIN NCVP3
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
91-146
202-236


PVS07_ROTS1
NONSTRUCTURAL PROTEIN NCVP3
SIMIAN II ROTAVIRUS (STRAIN SA11)
91-146
199-236


PVS08_ROTBU
NONSTRUCTURAL PROTEIN NS2/VP9
BOVINE ROTAVIRUS (STRAIN UK)
164-201


PVS08_ROTS1
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN II ROTAVIRUS (STRAIN SA11)
164-201
217-251


PVS09_ROTB4
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
2-29


PVS09_ROTB5
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A5)
2-29


PVS09_ROTBU
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN UK)
2-29


PVS09_ROTGA
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN ADRV)
210-237


PVS09_R0TH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4)
2-29


PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5)
2-29


PVS09_ROTHB
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE G/STRAIN B37)
2-29


PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
2-29


PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126)
2-29


PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
2-29


PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO AND STRAIN
2-29




D)


PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
2-29


PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
2-29


PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
2-29


PVS09_ROTP2
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN AT/76)
2-29


PVS09_ROTP3
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 3/STRAIN CRW-8)
2-29


PVS09_ROTS1
GLYCOPROTEIN VP7
SIMIAN II ROTAVIRUS (STRAIN SA11)
2-29


PVS10_ROTBS
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
125-152


PVS10_ROTSI
NONSTRUCTURAL GLYCOPROTEIN NCVP5
SIMIAN II ROTAVIRUS (STRAIN SA11)
113-140


PVS11_ROTBU
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
13-40
114-145


PVS11_ROTBV
MINOR OUTER CAPSID PROTEIN
BOVINE ROTAVIRUS (STRAIN VMR1)
13-40
114-145


PVS11_ROTGA
NONSTRUCTURAL PROTEIN
ROTAVIRUS GROUP B/STRAIN ADR (ADULT DIARRHEA
31-60




ROTAVIRUS)


PVS11_ROTH5
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
13-40


PVS11_ROTHD
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
13-40
111-145


PVS11_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
111-145


PVS11_ROTRA
MINOR OUTER CAPSID PROTEIN
RABBIT ROTAVIRUS (STRAIN ALABAMA)
118-145


PVS11_ROTSI
MINOR OUTER CAPSID PROTEIN
SIMIAN II ROTAVIRUS (STRAIN SA11)
111-146


PVSH_MUMPI
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS
9-46


PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
12-41


PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
9-41


PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
9-46


PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
9-46


PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
9-46


PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
9-46


PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
12-41


PVSH_MUMPR
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN RW)
9-41


PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN URABE VACCINE AM9)
12-41


PVS11_REOVD
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 3/STRAIN DEARING)
26-63
71-122
127-168
222-259


PVS11_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN D5/JONES)
4-104
130-193


PSV11_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
4-52
75-104
112-160


PVS12_REOVD
SIGMA 2 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
350-384


PVS13_REOVJ
SIGMA 3 PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
289-316


PVSIS_REOVD
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
90-117


PVSIS_REOVL
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
50-77


PVT3A_CAPV1
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
124-158


PVT5_SFVKA
PROTEIN T5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
250-277


PVTER_EBV
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
234-290


PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451


PVTER_HSV6U
PROBABLE DNA PACKAGING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
176-203


PVTER_HSV11
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1
710-737


PVTER_VZVD
PROBABLE DNA PACKAGING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
394-421


PVTP3_TTVIV
VIRAL PROTEIN TPX
THERMOPROTEUS TENAX VIRUS 1 (STRAIN VT3)
169-196


PVTPX_TTV1
VIRAL PROTEIN TPX
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRAI)
169-196


PVV_P14HA
V PROTEIN
HUMAN PARAINFLUENAZ 4A VIRUS (STRAIN TOSHIBA)
4-38


PY101_SSV1
HYPOTHETICAL 10.1 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
25-65


PY108_SSV1
HYPOTHETICAL 10.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
4-61


PY119_SSV1
HYPOTHETICAL 11.9 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
30-78


PY11K_TYDVA
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA)
53-87


PY13K_NPVAC
HYPOTH 13.1 KD IN 39 KD 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
85-112




VIRUS


PY13K_SSV1
HYPOTHETICAL 13.2 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
59-86


PY14K_SSV1
HYPOTHETICAL 13.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
5-39


PY16K_NPVAC
HYPOTH IN 39 KD PROTEIN 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
80-107




VIRUS


PY16K_SSV1
HYPOTHETICAL 15.6 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
77-111


PY17K_SSV1
HYPOTHETICAL 17.8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
9-36
119-153


PY18K_MSVN
HYPOTHETICAL 17.7 KD PROTEIN
MAIZE STREAK VIRUS (NIGERIAN ISOLATE)
34-61


PY18K_MSVS
HYPOTHETICAL 17.2 KD PROTEIN
MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE)
34-61


PY20K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
76-103


PY28K_SSV1
HYPOTHETICAL 28.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
93-164


PY2_SOCMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
118-148


PY31K_SSV1
HYPOTHETICAL 31.5 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
24-97


PY32K_SSV1
HYPOTHETICAL 31.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
233-267


PY38K_NPVAC
HYPOTHETICAL 37.7 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
133-184




VIRUS


PY3_SOCMV
HYPOTHETICAL PROTEIN 3
SOYBEAN CHLOROTIC MOTTLE VIRUS
122-149


PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
56-94


PY85K_SSV1
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
81-121
546-573
658-700


PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
13-40


PYB01_FOWPM
HYPOTHETICAL BAMHI-ORF1 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
74-108
152-179
184-218


PYB05_FOWPM
HYPOTHETICAL BAMHI-ORF5 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
62-89


PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF10 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
162-197
214-241


PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF12 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
11-38


PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF13 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
128-167


PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
87-116


PYDH1_HSVS7
HYPOTH 24.1 KD IN DHFR 3′REGION
HERPESVIRUS SAIMIRI (STRAIN 484-77)
161-188


PYDH1_HSVSC
HYPOTH 28.7 KD IN DHFR 3′REGION
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
52-82


PYDH4_HSVSC
HYPOTH 9.9 KD IN DHFR 3′REGION
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
53-83


PYF26_FOWP1
HYPOTHETICAL 25.9 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
8-35


PYF30_FOWP1
HYPOTHETICAL 30.9 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
170-204


PYH22_VACCV
HYPOTH 21.7 KD HINDIII-C PRO
VACCINIA VIRUS (STRAIN WR)
37-64
95-126
144-171


PYHR3_VACCV
HYPOTH HOST RANGE 27.4 KD PRO
VACCINIA VIRUS (STRAIN WR)
31-58
179-206


PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
90-121


PYKR4_EBV
HYPOTHETICAL BKRF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
19-53


PYL15_ADE41
HYPOTH 12.4 KD IN 33 DK REGION
HUMAN ADENOVIRUS TYPE 41
47-86


PYRL3_EBV
HYPOTHETICAL BLRF3 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
27-54


PYOR1_COYMV
HYPOTHETICAL 21 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
94-123


PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
35-76


PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)
64-94


PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)
65-95


PYOR5_ADEG1
HYPOTHETICAL 31.5 KD PROTEIN
AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)
92-119


PYORA_TTV1
HYPOTHETICAL 8.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
23-57


PYORL_TTV1
HYPOTHETICAL 26.8 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
15-42


PYORQ_TTV1
HYPOTHETICAL 7.3 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
3-31


PYORW_TTV1
HYPOTHETICAL 12.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
4-40


PYP12_RTBV
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
44-71


PYP12_RTBVP
HYPOTHETICAL P12 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)
44-71


PYP24_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
59-101
106-157


PYP24_TRBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)
51-101
106-157


PYP46_RTBV
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
58-107
197-231


PYP46_RTBVP
HYPOTHETICAL P46 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES)
58-107
197-231


PYP63_NPVAC
HYPOTH PRO P6.5 5′REGION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
44-71




VIRUS


PYP63_NPVOP
HYPOTH 40.0 KD IN P6.5 5′REGION
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS
325-352




VIRUS


PYPOH_NPVAC
HYPOTH 23.6 KD IN POLYHEDRIN 5′REGIO
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS
116-153




VIRUS


PYPOL_IPNVN
HYPOTHETICAL 17.0 KD PROTEIN
INFECTIOUS PANCREATIC NECROSIS VIRUS (STRAIN N1)
5-32


PYQ3_AMEPV
HYPOTHETICAL PROTEIN IN TK 3′REGION
AMSACTA MOOREI ENTOMOPOXVIRUS
8-57
59-96
156-183


PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
208-235


PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
223-257
268-299


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
141-168


PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
404-441


PYRP2_IRV6
REPETITIVE PROTEIN ORF2
CHILO IRIDESCENT VIRUS
10-45


PYVAG_VACCC
HYPOTHETICAL 9.3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
7-34


PYVAH_VACCC
HYPOTHETICAL 14.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
81-112


PYVDB_VACCC
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
29-77


PYVDB_VACCV
HYPOTHETICAL 8.5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
46-77


PYVDH_VACCV
HYPOTHETICAL 7.2 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
20-50


PYVGB_VACCC
HYPOTHETICAL 8.4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
10-44


PYZL2_EBV
HYPOTHETICAL BZLF2 PROTEIN
EPSTEIN-BARR (STRAIN B95-8)
152-179
















TABLE VII







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY


(PREFERRED VIRAL SEQUENCES)


















PCGENE
107 × 178 × 4
All Viruses (no bacieriophages)
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA


FILE NAME
PROTEIN
VIRUS
1
2
3
4
5
6
7
8
9





PPPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
453-480










PENV_MLVAV
ENV POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
517-544


PPOL_MLVAV
POL POLYPROTEIN
AKV MURINE LEUKEMIA VIRUS
805-832


PMYC_AVIM2
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
232-266
375-402




VIRUS CMII


PMYC_AVIMD
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
233-267
376-403




VIRUS HBI


PMYC_AVIMC
MYC TRANSFORMING PROTEIN
AVIAN MYELOCYTOMATOSIS
233-267
376-403




VIRUS MC29


VLI_FPVL
PROBABLE LI PROTEIN
AVIAN PAPILLOMAVIRU F V-L
38-65


PVGLB_HSVB1
GLYCOPROTEIN I PRECURSOR
BOVINE HERPES VIRUS TYPE I
427-454


PRIR2_HSVB3
RIBONUC-DIPHOSPH
BOVINE HERPESVIRUS TYPE I
90-117



REDUCT SMALL CHA
(STRAIN 34)


PVGLB_HSVB2
GLYCOPROTEIN B-I PRECURSOR
BOVINE HERPES VIRUS TYPE 2
447-474




(STRAIN BMV)


PENV_BIVO6
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
17-44
544-603
631-695




VIRUS (ISOLATE 106)


PENV_B1V27
ENV POLYPROTEIN
BOVINE IMMUNODEFICIENCY
17-44
573-632
660-724




VIRUS (ISOLATE 127)


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(AMERICAN ISOLATE FLK)


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(AMERICAN ISOLATE VDM)


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(AUSTRALIAN ISOLATE)


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
311-377




(BELGIUM ISOLATELB285)


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(BELGIUM ISOLATE LBS9)


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS
304-377




(JAPANESE ISOLATEBLV-I)


PHEMA_PI3B
HEMAGGLUTININ-NEURAMINIDASE
BOVINE PARAINFLUENZA 3 VIRUS
66-93


PRRPP_PI3B
RNA POLYMERASE ALPHA SUBUNIT
BOVINE PARAINFLUENZA 3 VIRUS
34-91
255-282
285-314


PVGLF_PI3B
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
115-182
207-241
459-497


PVMAT_PI3B
MATRIX PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
201-231


PRRPP_BRSVA
RNA POLYMERASE ALPHA SUBUNIT
BOVINE RESPIRATORY SYNCYTIAL
99-133




VIRUS (STRAIN A51908)


PVGLF_BRSVA
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL
38-65
154-202
216-243
442-469
486-531




VIRUS (STRAIN A51908)


PVMA2_BRSVA
MATRIX GLYCOPROTEIN M2
BOVINE RESPIRATORY SYNCYTIAL
124-152




VIRUS (STRAIN A51908)


PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY SYNCYTIAL
219-246




VIRUS (STRAIN A51908)


PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESIPRATORY SYNCYTIAL
38-65
154-202
216-243
444-471
488-533




VIRUS (STRAIN COPENHAGEN)


PVGLG_BRSVC
MAJOR SURFACE GLYCOPROTEIN G
BOVINE RESIPRATORY SYNCYTIAL
92-123




VIRUS (STRAIN COPENHAGEN)


PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL
38-65
154-202
216-243
444-471
488-533




VIRUS (STRAIN RB94)


PENV_MLVCB
ENY POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA VIRUS
510-539


PENV_SIVCZ
ENV POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
160-187
253-289
336-366
526-584
627-654


PVPU_SIVCZ
VPU PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
51-78


PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
242-269
621-685




(SIV(CPZ))


PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE)
5-34




PAPILLOMAVIRUS (STRAIN KANSAS)


VLI_CRPVK
PROBABLE LI PROTEIN
COTTONTAIL RABBIT (SHOPE)
331-383




PAPILLOMAVIRUS (STRAIN KANSAS)


PPOLG_DENIS
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1
1858-1885
2890-2935
2989-3016




(STRAIN SINGAPORE S275/90)


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
1544-
1858-
2908-
2982-
3117-





1571
1885
2935
3016
3147


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
1544-
1858-
2485-
2908-
2982-
3117-




(STRAIN 16681-P13K53)
1571
1885
2159
2935
3016
3147


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
1544-
1858-
2908-
3117-
3346-




(STRAIN JAMAICA)
1571
1885
2935
3147
3373


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
1544-
1858-
2905-
2979-
3114-
3343-




(STRAIN PR159151)
1571
1885
2932
3013
3144
3370


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2
1134-
1448-




(STRAIN TONGA 1974)
1161
1475


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
837-864
1542-
1857-
2494-
2980-
3345-






1569
1884
2521
3014
3372


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
2885-
2977-
3342-





2930
3011
3369


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39




(BROWN SIIANGHAI DUCK ISOLATE SS)


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39




(STRAIN CHINA)


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
5-39
304-331




(WHITE SHANGHAI DUCK ISOLATE S31)


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS
145-172
1215-
1344-
1876-




(STRAIN B95-8)

1242
1371
1903


PUL06_EBV
VIRION PROTEIN BBRFI
EPSTEIN-BARR VIRUS
115-142
313-340
542-569




(STRAIN B95-8)


PUL11_EBV
HYPOTHETICAL PROTEIN BBBRFI
EPSTEIN-BARR VIRUS
15-42




(STRAIN B95-8)


PUL52_EBV
PROB DNA REPLICATION
EPSTEIN-BARR VIRUS
185-212
987-814



PROTEIN BSLFI
(STRAIN B95-8)


PUL87_EBV
HYPOTHETICAL PROTEIN B(C)RFI
EPSTEIN-BARR VIRUS (STRAIN B95-8)
409-436


PUL92_EBV
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8)
107-144
168-196


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
847-874


PVGL2_EBV
PROBABLE MEMBRANE GLYCOPROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
68-102


PVGLB_EBV
GLYCOPROTEIN GP110 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
95-122
631-658


PVGLH_EBV
GLYCOPROTEIN GP86 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
549-576
619-648



GP85


PVGP8_EBV
PROBABLE MEMBRANE ANTIGEN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
104-149


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
440-470


PVTER_EBV
PROBABLE DNA PACKAGING PROTEINE
PSTEIN-BARR VIRUS (STRAIN B95-8)
234-290


PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
90-121


PYKR4_EBV
HYPOTHETICAL BKRE4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
19-53


PYLR3_EBV
HYPOTHETICAL BLRF3 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
27-54


PYZL2_EBV
HYPOTHETICAL BZLP2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
152-179


PBZLF_EBV
BZLF1 TRANS-ACTI VATOR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
193-220


PDNBI_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
977-
1041-





1004
1068


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
55-82


PLMP1_EBV
LATENT MEMBRANE PROTEIN I
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-175


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
294-321


PLMP1_EBVC
LATENT MEMBRANE PROTEIN I
EPSTEIN-BARR VIRUS (STRAIN CAO)
148-175


PLMP1_EBYR
LATENT MEMBRANE PROTEIN I
EPSTEIN-BARR VIRUS (STRAIN RAJI)
148-175


PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPES VIRUS TYPE I
345-375


PVGLC_HSVEB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPES VIRUS TYPE I
124-151


PVGLB_HSVEI
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE I
443-470
934-961




(ISOLATE HVS2SA)


PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPES VIRUS TYPE I
443-470
934-961




(STRAIN ABI)


PATI2_HSVEB
ALPHA TRANS-IND FACTOR 82 KD PRO
EQUINE HERPES VIRUS TYPE I
294-321




(STRAIN AB4P)


PATIN_HSVEB
ALPHA TRANS-IND PROTEIN
EQUINE HERPESVIRUS TYPE I
255-289




(STRAIN AB4P)


PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPES VIRUS TYPE I
184-211
321-348




(STRAIN AB4P)


PRIRI_HSVEB
RIBONUC-DIPHOSPH REDUCT LARGE CHA
EQUINE HERPESVIRUS TYPE I
75-102




(STRAIN AB4P)


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPES VIRUS TYPE I
229-256
566-593
1205-1232




(STRAIN AB4P)


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE I
640-667




(STRAIN AB4P)


PULI4_HSVEB
HYPOTHETICAL GENE 48 PROTEIN
EQUINE HERPESVIRUS TYPE I
247-286




(STRAIN AB4P)


PUL2I_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE I
44-71




(STRAIN AB4P)


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPES VIRUS TYPE I
715-749
987-




(STRAIN AB4P)

1014


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE I
193-220
943-970




(STRAIN AB4P)


PVGO3_HSVEB
GENE 3 PROTEIN
EQUINE HERPES VIRUS TYPE I
146-176




(STRAIN AB4P)


PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPES VIRUS TYPE I
443-470
934-691




(STRAIN AB4P)


PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPES VIRUS TYPE I
383-410




(STRAIN AB4P)


VIMP_HSVEB
PROB INTEGRAL MEMBRANE PROTEIN
EQUINE HERPES VIRUS TYPE I
147-174




(STRAIN AB4P)


PVP26_HSVEB
CAPSID PROTEIN VP26
EQUINE HERPES VIRUS TYPE I
36-63




(STRAIN AB4P)


PVGO3_HSVEK
GENE 3 PROTEIN
EQUINE HERPES VIRUS TYPE I
146-176




(STRAIN KENTUCKY A)


PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE I
443-470
933-960




(STRAIN KENTUCKY D)


PCELF_HSVEB
CELL FUSION PROTEIN PRECURSOR
EQUINE HERPES VIRUS TYPE I
312-339




(STRAINS AB4P and Ky A)


PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPES VIRUS TYPE 4
190-217


PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPES VIRUS TYPE 4
486-313
616-643


PVGLG_HSVE4
GLYCOPROTEIN G PRECURSOR
EQUINE HERPES VIRUS TYPE 4
271-298


PDUT_HSVE4
DEOXYU 5′-TRIPHOSPH NUCHYDROLASE
EQUINE HERPES VIRUS TYPE 4
90-117




(STRAIN 1942)


PVE2_PAPVE
PROBABLE E2 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
120-150


PENV_FIVPE
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
650-680
722-749




(ISOLATE PETALUMA)


PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
442-473




(ISOLATE PETALUMA)


PENV_FIVSD
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
639-668
720-747




(ISOLATE SAN DIEGO)


PENV_FIVT2
ENV POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS
640-679
721-748




(ISOLATE TM2)


PENV_FLVC6
ENV POLYPROTEIN
FELINE LEUKEMIA PRO VIRUS
509-538




(CLONE CFE-6)


PMYC_FLVTT
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA PRO VIRUS FTT
393-420


PMYC_FLV
MYC TRANSFORMING PROTEIN
FELINE LEUKEMIA VIRUS
393-420


PENV_FLVGL
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
490-519




(STRAIN A/GLASGOW-I)


PENV_FLVLB
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
510-339




(STRAIN LAMBDA-BI)


PENV_FLVSA
ENV POLYPROTEIN
FELINE LEUKEMIA VIRUS
487-516




(STRAIN SARMA)


PENV_MLVF5
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
523-553




(ISOLATE 57)


PENV_MLVFF
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
523-553




(ISOLATE FB29)


PENV_MLVFP
ENV POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS
523-553




(ISOLATE PVC-211)


PENY_GALV
ENV POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
176-203
523-564


PGAG_GALV
GAG POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
396-442
447-474


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
535-562
676-703


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
271-325


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
203-237
1021-
1117-
1454-






1048
1149
1481


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
203-237


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
182-216


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
203-237
1021-
1103-






1048
1149


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
203-237
1021-
1103-






1048
1149


PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/
456-483




STRAIN PHILILPPINO/PFDW294)


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
443-470


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE I)
702-729


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
702-729
1045-






1072


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
702-729
1045-






1072


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
374-401
2089-






2116


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
1049-
2089-





1076
2116


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
702-729
1045-






1072


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
378-405
702-729
1045-







1072


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
702-729
1045-






1072


PAANT_HDVAM
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVD3
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVS1
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133


PAANT_HDVS2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
16-43
106-133


PAANT_HDVWO
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVIT
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PAANT_HDVM2
DELTA ANTIGEN
HEPATITIS DELTA VIRUS (ISOLATE AMERICAN)
106-133


PPOLN_HEVBU
NON-STRUCTURAL POLYPRTEIN
HEPATITIS E VIRUS (STRAIN BURMA)
219-246
349-376


PPOLN_HEVME
NON-STRUCTURAL POLYPRTEIN
HEPATITIS E VIRUS (STRAIN MEXICO)
219-246
349-376


PPOLN_HEVMY
N-STRUCTURAL POLYPRTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
219-246
349-376


PPOLN_HEVPA
NON-STRUCTURAL POLYPRTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
218-245
348-375


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
5-39


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
294-328


PIE63_HSVII
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS
248-275




(TYPE 1/STRAIN 17)


PIE68_HSVII
IMMEDIATE-EARLY PROTEIN IE68
HERPES SIMPLEX VIRUS
40-67




(TYPE 1/STRAIN 17)


PTEGU_HSVII
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS
667-694
1673-1710




(TYPE 1/STRAIN 17)


PUL06_HSVII
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS
586-613




(TYPE 1/STRAIN 17)


PUL34_HSVII
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS
116-143




(TYPE 1/STRAIN 17)


PUL37_HSVII
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
470-497
853-884


PUL42_HSVII
DNA-BINDING PROTEIN UL42
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
231-258


PUL47_HSVII
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
488-515


PVGLC_HSVII
GLYCOPROTEIN C PRECURSOR
HERPEX SIMPLEX VIRUS (TYPE 1/STRAIN 17
469-510


PATI2_HSVIF
ALPHA TRANS-IND FACTOR 77 KD PRO
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
308-335


PUL47_HSVIF
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
488-515


PATI2_HSVIF
ALPHA TRANS-IND FACTOR 77 KD PRO
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
308-335


PVGLC_HSVIK
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS
469-510




(TYPE 1/STRAIN KOS)


PVGLE_HSV2
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
111-148


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/
102-129
228-262
567-611
962-993
1098-
1661-
1884-




STRAIN GS)




1118
1688
1911


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/
62-89
360-403




STRAIN GS)


PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS (TYPE 6/
208-235




STRAIN GS)


PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/
223-257
268-299




STRAIN GS)


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/
141-168




STRAIN GS)


PYRF4_HSV6G
HYPOTHETICAL PROTEIN RF4
HERPES SIMPLEX VIRUS (TYPE 6/
404-441




STRAIN GS)


PP100_HSV6U
MAJOR ANTIGENIC STRUCTL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/
81-108
189-216
688-715
785-812




STRAIN UGANDA-1102)


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/
536-563
729-768




STRAIN UGANDA-1102)


PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS (TYPE 6/
73-100
105-134




STRAIN UGANDA-1102)


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/
136-170
355-382




STRAIN UGANDA-1102)


PVTER_HSV6U
PROBABLE DNA PACKAGING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/
176-203




STRAIN UGANDA-1102)


PTYSY_HSVAT
THYMIDYLATE SYNTHASE
HERPESVIRUS ATELES
116-143


PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI (STRAIN 11)
625-652


PDUT_HSVSA
DEOXYU 5′-TRIPHOSPH NUCHYDROLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
179-213


PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI (STRAIN 11)
418-449


PIC18_HSVSA
PROBABLE PROC &TRANSPORT PRO
HERPESVIRUS SAIMIRI (STRAIN 11)
58-85
482-522


PIE68_HSVSA
IMMEDIATE-EARLY PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
48-78


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
340-386


PRIRI_HSVSA
RIBONUC-DIPHOSPH REDUCT LARGE CHA
HERPESVIRUS SAIMIRI (STRAIN 11)
324-351


PTEGU_HSVSA
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
524-607
672-700
777-814
846-898
949-986
990-
1467-
2102-










1017
1497
2135


PTYSY_HSVSA
THYMIDYLATE SYNTHASE
HERPESVIRUS SAIMIRI (STRAIN 11)
120-147


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
15-42
302-358
368-402


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
34-61
204-231
362-389


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
208-235


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
31-65
685-737


PUL52_HSVSA
PROB DNA REP GENE 56 PROTEIN
HERPES VIRUS SAIMIRI (STRAIN 11)
130-157


PUL73_HSVSA
HYPOTHETICAL GENE 53 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
9-36


PUL87_HSVSA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
582-609


PUL92_HSVSA
HYPOTHETICAL GENE 31 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
92-122


PUNG_HSVSA
URACIL-DNA GLYCOSYLASE
HERPESVIRUS SAIMIRI (STRAIN 11)
135-176


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
769-799


PVG45_HSVSA
HYPOTHETICAL GENE 45 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
138-165


PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
360-394


PVG52_HSVSA
HYPOTHETICAL GENE 52 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
47-74


PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
388-415


VIMP_HSVSA
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
80-107


PVP23_HSVSA
PROBABLE CAPSID PROTEIN VP23
HERPESVIRUS SAIMIRI (STRAIN 11)
2-29


PVP26_HSVSA
CAPSID PROTEIN VP26
HERPESVIRUS SAIMIRI (STRAIN 11)
48-75


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11)
205-232
344-372


PVP75_HSVSA
PROBABLE MEMBRANE ANTIGEN 75
HERPESVIRUS SAIMIRI (STRAIN 11)
181-208
929-997


PDNBI_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
333-368
512-539


PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI (STRAIN 11)
127-154


PYDHI_HSVS7
HYPOTH 24.1 KD IN DHFR 3′REGION
HERPESVIRUS SAIMIRI (STRAIN 484-77)
161-188


PYDHI_HSVSC
HYPOTH 28.7 KD IN DHFR 3′REGION
HERPESVIRUS SAIMIRI
52-82




(SUBGROUP C/STRAIN 488)


PYDH4_HSVSC
HYPOTH 9.9 KD OM DHFR 3′REGION
HERPESVIRUS SAIMIRI
53-83




(SUBGROUP C/STRAIN 488)


PENV_MLVHO
ENV POLYPROTEIN
HOMULV MURINE LEUKEMIA VIRUS
510-540


PDPOL_MCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
753-780


PIC18_HCMVA
PROB PROC &TRANSPORT PRO UL56
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
294-324


PIR05_HCMVA
HYPOTHETICAL PROTEIN IRL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
22-49


PIR12_HCMVA
HYPOTHETICAL PROTEIN IRL12
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-162


PIR13_HCMVA
HYPOTHETICAL PROTEIN IRL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
31-62


PRIRI_HCMVA
RIBONUC-DIPHOSPH REDUCT LARGE CHA
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
622-649


PTEGU_HCMVA
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
1251-
2229-





1281
2229


PUL08_HCMVA
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
6-47


PUL13_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
347-374


PUL16_HCMVA
HYPOTHETICAL PROTEIN UL16
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
81-112


PUL20_HCMVA
HYPOTH PRO UL20 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-61


PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
167-194
254-284


PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-562


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
114-148
448-485
763-790
802-853


PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
159-186


PUL59_HCMVA
HYPOTHETICAL PROTEIN UL59
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
74-101


PUL70_HCMVA
PROB DNA REP PROTEIN UL70
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-92


PUL73_HCMVA
UL73 GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
5-73


PUL74_HCMVA
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
45-79


PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
26-53
314-381


PUL95_HCMVA
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
37-71


PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
4-31
443-477


PULB9_HCMVA
HYPOTHETICAL PROTEIN UL119
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
33-78


PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
90-124


PUS09_HCMVA
HYPOTHETICAL PROTEIN HXLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
20-47


PUS14_HCMVA
HYPOTHETICAL PROTEIN HVLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
277-308


PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
191-218


PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
25-88
397-424
440-467
851-878


PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
107-136
270-297


PVGLI_HCMVA
IE GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
47-111


PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
417-451


PDNBI_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
437-464


PV30K_HCMVE
30 KD MAJOR EARLY PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN
194-221




EISENHARDT)


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
50-88
397-424
435-462
852-879


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
106-135


PENV_HVIA2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
544-592
630-682
790-825




TYPE 1 (ARV2/SF2 ISOLATE)


PGAG_HVIA2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
91-118




TYPE 1 (ARV2/SF2 ISOLATE)


PPOL_HVIA2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
218-245
620-661




TYPE 1 (ARV2/SF2 ISOLATE)


PVPU_HVIA2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
3-31




TYPE 1 (ARV2/SF2 ISOLATE)


PVPU_HVIB1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
5-48




TYPE 1 (BH10 AND HXB3 ISOLATES)


PENV_HVIB1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
545-594
631-683
791-818




TYPE 1 (BH10 ISOLATE)


PPOL_HVIB1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
230-257
637-673




TYPE 1 (BH10 ISOLATE)


PPOL_HVIB5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
230-257
632-673




TYPE 1 (BH5 ISOLATE)


PENV_HVIB8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
540-589
626-678
786-813




TYPE 1 (BH8 ISOLATE)


PVPU_HVIB8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
21-48




TYPE 1 (BH8 ISOLATE)


PENV_HVIBN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
267-294
338-365
562-590
628-679
787-815




TYPE 1 (BRIAN ISOLATE)


PVPU_HVIBN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
22-49




TYPE 1 (BRIAN ISOLATE)


PENV_HVIBR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
550-599
636-688
796-823




TYPE 1 (BRU ISOLATE)


PPOL_HVIBR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
230-257
632-673




TYPE 1 (BRU ISOLATE)


PVPU_HVIBR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
5-48




TYPE 1 (BRU ISOLATE)


PENV_HVIC4
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
397-424
557-606
643-695
803-835




TYPE 1 (CDC-451 ISOLATE)


PVPU_HVIC4
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
3-30




TYPE 1 (CDC-451 ISOLATE)


PENV_HVIEL
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
255-296
386-413
543-591
628-680




TYPE 1 (ELI ISOLATE)


PNEF_HVIEL
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS
81-119




TYPE 1 (ELI ISOLATE)


PPOL_HVIEL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
217-244
624-660




TYPE 1 (ELI ISOLATE)


PVPU_HVIEL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
6-33




TYPE 1 (ELI ISOLATE)


PENV_HVIH2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
545-594
631-683
791-818




TYPE 1 (HXB2 ISOLATE)


PPOL_HVIH2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
218-245
620-661
921-951




TYPE 1 (HXB2 ISOLATE)


PVPU_HVIH2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
5-48




TYPE 1 (HXB2 ISOLATE)


PENV_HVIH3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
545-594
631-683
791-818




TYPE 1 (HXB3 ISOLATE)


PENV_HVIJ3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
350-377
556-605
642-694
802-829




TYPE 1 (JH3 ISOLATE)


PGAG_HVIJ3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
91-118




TYPE 1 (JH3 ISOLATE)


PVPU_HVIJ3
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
2-29




TYPE 1 (JH3 ISOLATE)


PENV_HVIJR
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
336-363
622-675
783-811




TYPE 1 (JRCSF ISOLATE)


PPOL_HVIJR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
222-249
624-665




TYPE 1 (JRCSF ISOLATE)


PVPU_HVIJR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
22-49




TYPE 1 (JRCSF ISOLATE)


PENV_HVIMA
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
547-595
633-707
794-826




TYPE 1 (MAL ISOLATE)


PPOL_HVIMA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
217-244
476-510
619-660




TYPE 1 (MAL ISOLATE)


PVPU_HVIMA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
5-32




TYPE 1 (MAL ISOLATE)


PENV_HVIMF
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
543-592
629-681
789-816




TYPE 1 (MN ISOLATE)


PENV_HVIMN
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
343-370
567-595
632-684
791-819




TYPE 1 (MN ISOLATE)


PGAG_HVIMN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
87-118




TYPE 1 (MN ISOLATE)


PPOL_HVIMN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
221-248
623-664




TYPE 1 (NDK ISOLATE)


PENV_HVIND
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
249-290
536-583
621-673
783-813




TYPE 1 (NDK ISOLATE)


PNEF_HVIND
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS
81-119




TYPE 1 (NDK ISOLATE)


PPOL_HVIND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
217-244
624-660




TYPE 1 (NDK ISOLATE)


PVPU_HVIND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
6-33




TYPE 1 (NDK ISOLATE)


PENV_HVIN5
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
326-360




TYPE 1 (NEW YORK-5 ISOLATE)


PPOL_HVIN5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
218-245
625-661




TYPE 1 (NEW YORK-5 ISOLATE)


PENV_HVIOY
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
544-593
630-704
789-820




TYPE 1 (OYI ISOLATE)


PPOL_HVIOY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
218-245
620-661




TYPE 1 (OYI ISOLATE)


PENV_HVIPV
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
545-594
631-683
791-818




TYPE 1 (PV22 ISOLATE)


PPOL_HVIPV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
230-257
637-673




TYPE 1 (PV22 ISOLATE)


PVPU_HVIPV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
5-48




TYPE 1 (PV22 ISOLATE)


PENV_HVIRH
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
280-307
351-378
554-602
640-692
800-832




TYPE 1 (RF/HAT ISOLATE)


PPOL_HVIRH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
217-244
619-660




TYPE 1 (RF/HAT ISOLATE)


VIF_HVIRH
VIRION INFECTIVIVTY FACTOR
HUMAN IMMUNODEFICIENCY VIRUS
62-89




TYPE 1 (RF/HAT ISOLATE)


PENV_HVISC
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
338-365
545-593
631-683




TYPE 1 (SC ISOLATE)


PENV_HVISI
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
333-363
536-585
622-674
782-809




TYPE 1 (SF162 ISOLATE)


PVPU_HVISI
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
22-49




TYPE 1 (SF162 ISOLATE)


PENV_HVIS3
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
541-589
627-679
787-815




TYPE 1 (SF162 ISOLATE)


PENV_HVIKB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
274-301
555-596
637-677
776-824




TYPE 1 (STRAIN KB I-GP32)


PPOL_HVIU4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
217-244
513-540
619-660




TYPE 1 (STRAIN UGANDAN/ISOLATE)


PENV_HVIW1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
338-365
545-593
631-683
791-818




TYPE 1 (WMJ1 ISOLATE)


PENV_HVIW2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
334-361
536-584
622-674
782-809




TYPE 1 (WMJ2 ISOLATE)


PENV_HVIZ8
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
266-307
573-601
634-678
797-828




TYPE 1 (Z-84 ISOLATE)


PENV_HVIZ2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
255-296
542-591
628-680
790-820




TYPE 1 (Z2/CDC-Z34 ISOLATE)


PPOL_HVIZ2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
217-244
619-660




TYPE 1 (Z2/CDC-Z34 ISOLATE)


PENV_HVIZ3
ENV POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
251-292




TYPE 1 (ZAIRE 3 ISOLATE)


PENV_HVIZ6
ENV POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
256-297
545-593
630-682
792-822




TYPE 1 (ZAIRE 6 ISOLATE)


PNEF_HVIZ6
NEGATIVE FACTOR
HUMAN IMMUNDOEFICIENCY VIRUS
86-124




TYPE 1 (ZAIRE 6 ISOLATE)


PENV_HVIZH
ENV POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
545-594
627-666
791-823




TYPE 1 (ZAIRE HZ321 ISOLATE)


PENV_HV2BE
ENV POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
61-88
532-591
621-648
653-697




TYPE 2 (ISOLATE BEN)


PGAG_HV2BE
GAG POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
88-115




TYPE 2 (ISOLATE BEN)


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
491-582




TYPE 2 (ISOLATE BEN)


PENV_HV2CA
ENV POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
534-593
623-650
655-699




TYPE 2 (ISOLATE CAM2)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
471-562




TYPE 2 (ISOLATE CAM2)


PENV_HV2DI
ENV POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
61-88
523-550
555-582
644-688




TYPE 2 (ISOLATE D194)


PGAG_HV2DI
GAG POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
88-115




TYPE 2 (ISOLATE D194)


PPOL_HV2DI
POL POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
509-600




TYPE 2 (ISOLATE D194)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNDOEFICIENCY VIRUS
491-568




TYPE 2 (ISOLATE D205,7)


PENV_HV2G1
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
60-87
524-551
556-583
613-640
645-693




TYPE 2 (ISOLATE GHANA-1)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
471-562




TYPE 2 (ISOLATE GHANA-1)


PENV_HV2NZ
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
61-88
524-551
556-583
613-640
662-689




TYPE 2 (ISOLATE NIH-Z)


PGAG_HV2NZ
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
88-115




TYPE 2 (ISOLATE NIH-Z)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
471-529




TYPE 2 (ISOLATE NIH-Z)


PENV_HV2RO
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
58-85
533-592
622-698




TYPE 2 (ISOLATE ROD)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
472-563




TYPE 2 (ISOLATE ROD)


PENV_HV2SB
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
557-584
614-673




TYPE 2 (ISOLATE SBLISY)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
473-562




TYPE 2 (ISOLATE SBLISY)


PENV_HV2ST
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
442-476
527-554
559-586
648-692




TYPE 2 (ISOLATE ST)


PGAG_HV2ST
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
88-115




TYPE 2 (ISOLATE ST)


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
491-582




TYPE 2 (ISOLATE ST)


PENV_HV2S2
ENV POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS
442-476
527-554
559-586
648-682




TYPE 2 (ISOLATE ST/24-IC#2)


PVE4_HPV11
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 11
81-108


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 11
30-60


PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 13
157-184
334-361


PVE2_HPV16
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 16
61-105
312-342


PVE2_HPV16
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 16
66-93


PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 18
60-87


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 18
313-340


PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 18
59-86


PVE6_HPV18
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 18
75-102


VL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 18
183-210


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 1A
159-186


VL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 1A
407-445


PVE1_HPV2A
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 2A
21-48


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 2A
159-193


PVE4_HPV31
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 31
75-102


PVE6_HPV31
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 31
69-96


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 33
180-207


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 33
304-331


VL1_HPV33
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 33
19-46


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 35
158-192
327-354


PVE5_HPV35
PROBABLE E5 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 35
27-54


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 39
103-130


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 39
7-34
323-357


PVE6_HPV39
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 39
71-102


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 41
55-89


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 41
63-97


PVE6_HPV41
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 41
119-146


VL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 41
345-372


VL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 41
415-442


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 42
25-59


PVE6_HPV45
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 45
75-102


PVE1_HPV47
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 47
146-173


PVE2_HPV47
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 47
17-51
148-175
276-303


PVE2_HPV05
PROBABLE E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5
17-51


PVE4_HPV05
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5
202-229


PVE2_HPV51
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 51
137-184


PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 51
72-99


VL1_HPV51
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 51
19-46


PVE1_HPV57
E1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 57
21-48


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 57
166-193


PVE2_HPV58
E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 58
2-36
309-336


VL1_HPV58
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 58
45-72


PVE2_HPV5B
PROBABLE E2 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5B
17-51


PVE4_HPV5B
PROBABLE E4 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5B
202-229


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 5B
11-41


PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 6B
30-60


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 6C
30-60


VL1_HPV08
PROBABLE L1 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE 8
354-392


PVE6_HPVME
E6 PROTEIN
HUMAN PAPILLOMA VIRUS TYPE ME180
71-102


PRRPP_P11HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
84-111
234-261
375-416




(STRAIN C35)


PNCAP_P11HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
377-404
455-482




(STRAIN C39)


PRRPP_P11HC
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
84-111
234-261
375-416




(STRAIN C39)


PVGLP_P11HC
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS
147-174
210-266




(STRAIN C39)


PRRPP_P11HE
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
84-111
244-271
375-416




STRAIN CI-14/83)


PVNSC_P11HB
NONSTRUCTURAL PROTEIN C
HUMAN PABAINPLIENZA 1 VIRUS
41-75




(STRAIN CI-14/83)


PRRPP_P11HD
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 1 VIRUS
84-111
232-262
375-416




(STRAIN CI-5/73)


PHEMA_P11HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 1 VIRUS
79-110
366-393




(STRAIN WASHINGTON/1957)


PNCAP_P11HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS
377-404
444-488




(STRAIN WASHINGTON/1957)


PRRPP_P12H
RHA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256


PVGLF_P12H
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528


PVGLF_P12HG
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528




(STRAIN GREER)


PRRPP_P12HG
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
322-349
1564-
1687-
1901-




(STRAIN TOSHIBA)

1598
1721
1946


PRRPP_P12HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
167-194
222-256




(STRAIN TOSHIBA)


PVGLF_PI2HT
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS
90-117
141-175
238-266
483-528




(STRAIN TOSHIBA)


PVMAT_P12HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS
96-123




(STRAIN TOSHIBA)


PHEMA_P13HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
27-61




(STRAIN AUS/124854/114)


PNCAP_P13H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
376-403




(STRAIN NIH 47885)


PHEMA_P13H4
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
27-61




(STRAIN NIH 47885)


PRRPL_P13H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS
52-86
136-163
608-638
1081-
1994-
2115-




(STRAIN NIH 47885)



1233
2036
2142


PRRPP_P13H4
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS
144-144
269-299




(STRAIN NIH 47885)


PVGLF_P13H4
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS
115-182
207-241
457-497




(STRAIN NIH 47885)


PVMAT_PI3H4
MATRIX PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS
201-231




(STRAIN NIH 47885)


PVNSC_PI3H4
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA 3 VIRUS
58-99




(STRAIN NIH 47885)


PHEMA_PI3HV
HEMAGOLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
27-61




(STRAIN TEX/12677183)


PHEMA_PI2HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
27-76




(STRAIN TEX/545/80)


PHEMA_PI3HU
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
23-70




(STRAIN TEX/9305/82)


PHEMA_PI3HX
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZR 3 VIRUS
27-61




(STRAIN WASH/1511/73)


PHEMA_PI3HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS
27-61




(STRAIN WASH/641/79)


PRRPP_PI4HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS
4-38




(STRAIN TOSHIBA)


PVV_PI4HA
V PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS
4-38




(STRAIN TOSHIBA)


PRRPP_HESV
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141


PNCAP_HRSVA
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
4-31




(STRAIN A2)


PRRPL_HRSVA
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
103-192
210-237
667-694
788-815
1007-
1138-
1453-
1776-
2062-




(STRAIN A2)




1034
1165
1480
1803
2089


PRRPP_HRSVA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141




(STRAIN A2)


PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
213-243
488-518




(STRAIN A2)


PVMA2_HRSVA
MATRIX GLYCOPROTEIN M2
HUMAN RESPIRATORY SYNCYTIAL VIRUS
124-151




(STRAIN A2)


PVMAT_HESVA
MATRIX PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
219-246




(STRAIN A2)


PVGLG_HRSV4
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
66-107




(STRAIN RSB5857)


PVGLG_HRSV5
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
243-273




(STRAIN RSB6190)


PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
213-243
442-471
488-518




(STRAIN RSS-2)


PRRPP_HRSVL
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
99-141




(SUBGROUP A/STRAIN LONG)


PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-202
216-243
444-471
488-515




(SUBGROUP A/STRAIN LONG)


PNCAP_HRSVI
NUCLEOCAPSID PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS
4-31
74-108
112-141




(SUBGROUP B/STRAIN 18537)


PRRPP_HRSVI
RNA POLYMERASE ALPHA SUBUNIT
HUMAN RESPIRATORY SYNCYI1AL VIRUS
99-141




(SUBGROUP B/STRAIN 18537)


PVGLF_HRSVI
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
38-65
154-203
442-471
488-515




(SUBGROUP B/STRAIN 18537)


PVGLG_HASVI
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
63-93




(SUBGROUP B/STRAIN 18537)


PVGLG_HRSV8
MAJOR SURFACE GLYCOPROTEIN G
HUMAN RESPIRATORY SYNCYTIAL VIRUS
66-93




(SUBGROUP B/STRAIN 8/60)


PENV_HTL1C
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
342-376




TYPE I (CARIBBEAN ISOLATE)


PPOL_HTLIC
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
674-712




TYPE I (CARIBBEAN ISOLATE)


PENV_HTLIM
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
342-376




TYPE I (ISOLATE MT-2)


PENV_HTLIA
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
342-376




TYPE I (STRAIN ATK)


PPOL_HTLIA
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS
674-712




TYPE I (STRAIN ATK)


PENV_HTLV2
ENV POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
336-370


PDPOL_HSVII
DNA POLYMERASE
ICTALURID HERPES VIRUS I
328-366
710-737


PKR74_HSVII
GENE 74 PROTEIN KINASE
ICTALURID HERPES VIRUS I
491-518


PVG07_HSVII
HYPOTH GENE 7 MEMB PRO
ICTALURID HERPES VIRUS I
71-98


PVGI7_HSVII
HYPOTHETICAL GENE 17 PROTEIN
ICTALURID HERPES VIRUS I
177-204


PVGI8_HSVII
HYPOTHETICAL GENE 18 PROTEIN
ICTALURID HERPES VIRUS I
174-208


PVG22_HSVII
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPES VIRUS I
373-400
581-622
668-705
766-824


PVG24_HSVII
HYPOTHETICAL GENE 24 PROTEIN
ICTALURID HERPES VIRUS I
31-58


PVG28_HSVII
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPES VIRUS I
253-290
497-528


PVG34_HSVII
HYPOTHETICAL GENE 34 PROTEIN
ICTALURID HERPES VIRUS I
95-122


PVG37_HSVII
HYPOTHETICAL GENE 37 PROTEIN
ICTALURID HERPES VIRUS I
442-469


PVG39_HSVII
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPES VIRUS I
651-678
1088-






1115


PVG46_HSVII
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPES VIRUS I
142-169
346-373
897-924
973-








1007


PVG51_HSVII
HYPOTH GENE 51 MEMBRANE PROTEIN
ICTALURID HERPES VIRUS I
34-61
87-114


PVG56_HSVII
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPES VIRUS I
582-609


PVG63_HSVII
HYPOTHETICAL GENE 63 PROTEIN
ICTALURID HERPES VIRUS I
550-584


PVG64_HSVII
HYPOTHETICAL GENE 64 PROTEIN
ICTALURID HERPES VIRUS I
477-504


PVG65_HSVII
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPES VIRUS I
1213-





1251


PVG66_HSVII
HYPOTHETICAL GENE 66 PROTEIN
ICTALURID HERPES VIRUS I
362-406


PVG67_HSVII
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPES VIRUS I
1342-1369


PVG68_HSVII
HYPOTHETICAL GENE 68 PROTEIN
ICTALURID HERPES VIRUS I
261-288


PVG72_HSVII
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPES VIRUS I
447-481


PVG75_HSVII
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPES VIRUS I
388-422


PVG76_HSVII
HYPOTHETICAL GENE 76 PROTEIN
ICTALURID HERPES VIRUS I
200-227


PVTER_HSVII
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPES VIRUS I
710-737


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN)
29-56
194-221
388-457




A/EQUINE/SWITZERLAND/137/72


PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/AICHI/2/68)
387-453


PVNSI_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77)
171-198


PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANAS
378-405




ACUTA/PRIMORJE/695/76)


PRRP2_IAANN
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




ANN ARBOR/6/60)


PVNSI_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
171-198


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
378-405


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
24-51
371-437


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/BLACK
47-81




DUCK/AUSTRALIA/702/78)


PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78)
378-405


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




BUDGERIGAR/HOKKAIDO/1/77)


PRRP3_IABUD
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/
537-567




BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




BUDGERIGAR/HOKKAIDO/1/77)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78)
378-405


PNRAM_IACAO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
33-64




CAMEL/MONGOLIA/82)


PHEMA_IACAO
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN A/
9-36




CAMEL/MONGOLIA/82)


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




CHICKEN/ALABAMA/1/75)


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58
382-441
494-528




CHICKEN/GERMANY/N/49)


PVNSI_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




CHICKEN/GERMANY/N/49)


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




CHICKEN/GERMANY/N/49)


PVNSI_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
168-195




CHICKEN/JAPAN/24)


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
396-426




CHICKEN/PENNSYLVANIA/1/83)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




CHICKEN/PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
396-426




CHICKEN/PENNSYLVANIA/1370/83)


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
119-146
384-443




CHICKEN/VICTORIA/1/85)


PNRAM_IACH1
NEURAMINDASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
16-43
50-91


PRRP3_IACH1
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
331-358


PVNSI_IACH1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
171-198


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




DUCK/ALBERTA/28/76)


PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
51-81




DUCK/ALBERTA/28/76)


PHEMA_IADA4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-59
418-478




DUCK/ALBERTA/35/76)


PHEMA_IADA2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
423-453
499-543




DUCK/ALBERTA/60/76)


PVNSI_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




DUCK/ALBERTA/60/76)


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




DUCK/ALBERTA/78/76)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/AUSTRALIA/749/80)


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/BEIJING/1/78)


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




DUCK/CZECHOSLOVAKIA/56)


PVNCU_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/CZECHOSLOVAKIA/56)


PVNUC_IADEI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/ENGLAND/1/)


PHEMA_IADEI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55
402-453
506-533




DUCK/ENGLAND/1/56)


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/ENGLAND/1/62)


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
21-48




DUCK/GERMANY/49)


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/10/85)


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/21/82)


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/33/80)


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/5/77)


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/7/82)


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/8/80)


PRRP2_IADG2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




DUCK/HOKKAIDO/8/80)


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




DUCK/HOKKAIDO/9/85)


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/HONG KONG/7/75)


PHEMA_IADIR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
415-445




DUCK/IRELAND/113/83)


PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
31-58




DUCK/MANITOBA/1/53)


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/MANITOBA/1/53)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-56




DUCK/MEMPHIS/546/76)


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




DUCK/MEMPHIS/928/74)


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/MEMPHIS/928/74)


PHEMA_IADNY
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55




DUCK/NEW YORK/12/78)


PHEMA_IADNZ
HEMAGGLUTINON PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




DUCK/NEW ZEALAND/31/76)


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/NEW ZEALAND/31/76)


PHEMA_IADUI
HEMAGOLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
21-55




DUCK/UKRAINE/1/60)


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




DUCK/UKRAINE/1/63)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




DUCK/UKRAINE/2/60)


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55)
378-405


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77)
40-67
387-453


PHEMA_IAEN6
HEMAGOLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/ENGLAND/878/69)
24-51


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/ALGIERAS/72)


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/C.DETROIT/1/64)


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/CAMBRIDGE/1/63)


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/CAMBRIDGE/1/73)


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/74)
197-224
386-413


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/DETROIT/1/64)


PHEMA_IARFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/FONTAINEBLEAU/76)


PVNUC_IAHJ1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/JILLIN/1/89)


PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
5-44
46-76
364-400




EQUINE/KENTUCKY/1/81)


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/KENTUCKY/1/87)


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/KENTUCKY/2/86)


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/LEXINGTON/1/66)


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/LONDON/1416/73)


PRRP2_IAHLO
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




EQUINE/LONDON/1416/73)


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/LONDON/1416/73)


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/MIAMI/1/63)


PHEMA_IAHNM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/MIAMI/I/63)


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/NEW MARKET/1/17)


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/NEW MARKET/76)


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/PRAGUE/1/56)


PRRP3_IAHPR
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/
331-361
480-507




EQUINE/PRAGUE/1/56)


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/PRAGUE/1/56)


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/ROMANIA/80)


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/SANTIAGO/1/185)


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
29-56
194-221
388-457




EQUINE/SAO PAULO/1/76)


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-432




EQUINE/TENNESSEE/5/86)


PREP2_IAHTE
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




EQUINE/TENNESSEE/5/86)


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




EQUINE/TENNESSEE/S/86)


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-455




EQUINE/TOKYO/71)


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
386-452




EQUINE/URUGUAY/1/63)


PVNSI_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




FORT MONMOUTH/1/47)


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FORT MONMOUTH/1/47)


PVNSI_ZAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




FORT WARREN/1/50)


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FORT WARREN/1/50)


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FOWL PLAGUE VIRUS/DOBSON/DUTCH/27)


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
177-221
384-442




FOWL PLAGUE VIRUS/ROSTOCK/34)


PRRP2_IAFPR
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




FOWL PLAGUE VIRUS/ROSTOCK/34)


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




FOWL PLAGUE VIRUS/ROSTOCK/34)


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
10-48
52-80
197-224




FOWL PLAGUE VIRUS/WEYBRIDGE)


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




GREY TEAL/AUSTRALIA/2/79)


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GREY TEAL/AUSTRALIA/2/79)


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
504-531




GULL/ASTRAKHAN/227/84)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/ASTRAKHAN/227/84)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/1815/79)


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/1824/78)


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/5/77)


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
505-532




GULL/MARYLAND/704/77)


PRRP2_IAGU2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




GULL/MARYLAND/704/77)


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MARYLAND/704/77)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MASSACHUSETTS/26/80)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




GULL/MINNESOTA/945/80)


PHEMA_IAHAR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/HARBIN/1/88)
29-56


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HICKOX/40)
378-405


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/1/68)
378-405


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83)
378-405


PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57)
196-233


PHEMA_IAKIE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
29-56
425-478


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
50-81


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
378-405


PRRPI_IAKOR
RNA-DIRECTED RNA POT SUB P1
INFLUENZA A VIRUS (STRAIN
575-602




A/KOREA/426/68)


PRRP2_IAKOR
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN
119-146




A/KOREA/426/68)


PRRP2_IALE2
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN
119-146




A/LENINGRAD/134/17/57)


PRRP2_IALE1
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN
119-146




A/LENINGRAD/134/57)


PVNSI_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/LENINGRAD/134/57)


PHEMA_IALEN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56
425-478




A/LENINGRAD/54/1)


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
50-81




A/LENINGRAD/54/1)


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUST (STRAIN
378-405




A/LENINGRAD/54/1)


PVNSI_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




MALLARD/ALBERTA/88/76)


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
380-450




MALLARD/ASTRAKHAN/244/82)


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




MALLARD/ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
385-455




MALLARD/ASTRAKHAN/263/82)


PRRP2_IAMA4
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




MALLARD/NEW YORK/6750/78)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




MALLARD/NEW YORK/6750/78)


PHEMA_IAMAO
HEMAGGLUITININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
387-453




MALLARD/NEW YORK/6874/78)


PHEMA_LAMEI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71)
40-67
387-453


PHRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/
16-43
50-81




71H-A/BELLAMY/42N)


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/10/72)
40-67
387-452


PHEMA_IAME6
HEMAUGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86)
24-51
371-437


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
31-58
382-441


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
378-405


PVNUC_IANEI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NEW JERSEY/8/76)
387-453


PHEMA_IANEI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
387-453


PRRP2_IANT6
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
119-146


PYNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
378-405


PYNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/OHIO/4/83)
378-405


PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
16-43
50-81




PARROT/ULSTER/73)


PYNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




PARROT/ULSTER/73)


PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
505-534




PILOT WHALE/MAINE/328/84)


PRRP2_IAPI0
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




PINTAIL/ALBERTA/119/79)


PYNSI_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




PINTAIL/ALBERTA/121/79)


PYNSI_IAPI3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




PINTAIL/ALBERTA/358/79)


PHEMA_IAPUE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
29-56
425-478


PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
16-43


PRRP2_IAPUE
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
119-146


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
378-405


PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/QU/7/70)
24-51


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




RUDDY TURNSTONE/NEW JERSEY/47/85)


PRRP2_IARUD
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




RUDDY TURNSTONE/NEW JERSEY/47/85)


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




RUDDY TURNSTONE/NEW JERSEY/47/85)


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/
49-88




RUDDY TURNSTONE/NEW JERSEY/60/83)


PVNUC_IASEO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SEAL/MASSACHUSETTS/1/80)


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
381-451




SEAL/MASSACHUSETTS/133/82)


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
28-56
160-187
506-547




SHEARWATER/AUSTRALIA/72)


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SHEARWATER/AUSTRALIA/72)


PRRP2_IASIN
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
119-146


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SINGAPORE/1/57)


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
119-146
384-443




STARLING/VICTORIA/5156/85)


PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/29/37)
378-405


PVNUC_IAZ4I
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/41/49)
378-405


PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
378-405




CAMBRIDGE/1/35)


IHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/
40-67
387-453




COLORADO/1/77)


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
378-405




DANDONG/9/83)


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
378-405




GERMANY/2/81)


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/
371-437




HONG KONG/126/82)


PRRP2_IAZH3
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SWINE/
119-146




HONG KONG/126/82)


PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
378-405




HONG KONG/126/82)


PVNUC_IAZH4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
378-405




HONG KONG/127/82)


PVNUC_IAZHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
378-405




HONG KONG/6/76)


PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
371-437




SWINE/HONG KONG/81/78)


PRRP2_IAZUI
RNA-DIRECTED RHA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




SWINE/HONG KONG/81/78)


PHEMA_IAZIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
418-478
506-547




SWINE/INDIANA/1726/88)


PRRP2_IAZII
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
119-146


PVNUC_IAZII
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
378-405


PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31)
378-405


PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46)
378-405


PVNUC_IAZiS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/141/81)
378-405


PVNUC_IAZJ2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/2/79)
378-405


PVNUC_IAZJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/437/76)
378-405


PVNUC_IAZI4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89)
378-405


PYNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42)
378-405


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54)
378-405


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/NETHERLANDS/12/85)


PHEMA_IAZNJ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/
418-478
506-547




SWINE/NEW JERSEY/11/76)


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35)
378-405


PVNUC_IAZON
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81)
378-405


PRRP3_IAZTE
RNA-DIRECTED RNA POL SUB P3
INFLUENZA A VIRUS (STRAIN A/
487-514




SWINE/TENNESSEE/24/77)


PVNUC_IAZTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




SWINE/TENNESSEE/24/77)


PRRP2_IAZTF
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/
119-146




SWINE/TENNESSEE/26/77)


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
387-453




A/SWINE/UKKEL/1/84)


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/WISCONSIN/1/57)


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/SWINE/WISCONSIN/1/61)


PHEMA_IATA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
29-56




A/TAIWAN/1/86)


PVNUC_IATE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN
378-405




A/TEAL/ICELAND/29/80)


PHEMA_IATRA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN
21-55




A/TERN/AUSTRALIA/G70C/75)


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN
49-82




A/TERN/AUSTRALIA/G70C/75)


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TERN/SOUTH AFRICA/61)


PVNSI_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/
171-198




TERN/TURKMENIA/18/72)


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/
378-405




TERN/TURKMENIA/18/72)


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77)
378-405


PVNSI_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/TURKEY BETHLEHEM-GLILIT/1492-B/82)


PVNSI_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63)
171-198


PHEMA_IATKI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
415-445




IRELAND/1378/83)


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/
378-405




MINNESOTA/1661/81)


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
381-451




MINNESOTA/833/80)


PRRP2_IATKM
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/TURKEY/ 119-146




MINNESOTA/833/80)


PHEMA_IATKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
424-454
493-539




ONTARIO/6118/68)


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
507-534




ONTARIO/7732/66)


PYNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/
378-405




ONTARIO/7732/66)


PHEMA_IATEK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
32-62 194-221
381-422




OREGON/71)


PVNS2_IATKR
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/TURKEY/
87-114




OREGON/71)


PHEMA_IATIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
419-449
500-536




WISCONSIN/1/66)


PHEMA_IAUDO
HEMAGOLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
40-67
387-453


PVNSI_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN
171-198




A/UDORN/307/72)


PVNUC_IAUDO
NUCLEOPROTRIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
378-405


PHEMA_IAUSS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
29-56
425-478


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
50-81


PVNSI_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
171-198


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
378-405


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
41-68
388-454


PRRP2_IAVI7
RNA-DIRECTRD RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
119-146
327-354


PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68)
378-405


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84)
49-88


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84)
378-405


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/
378-405




PACIFIC OCEAN/19/76)


PHEMA_IAWIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
424-477


PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
16-43


PRRP2_IAWIL
RNA-DIRECTED RNA POL SUB P2
INFLUENZA A VIRUS (STRAIN AAVILSON-SMITH/33)
119-146


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
378-405


PVNUC_IAWIS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/18)
378-405


PHEMA_IAXIA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN AIXIANFENG/3/89)
29-56


PRRP2_INBAC
RNA-DIRECTED RNA POL SUB P2
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/
157-194




1/66 [COLD-ADAPTED])


PRRP3_INBAC
RNA-DIRECTED RNA POL SUB P3
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/
2-33
472-509




1/66 [COLD-ADAPTED])


PRRP2_INBAD
RNA-DIRECTED RNA POL SUB P2
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/
164-194




1/66 (WILD-TYPE)


PRRP3_INBAD
RNA-DIRECTED RNA POL SUB P3
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/
2-33
472-509




1/66 (WILD-TYPE)


PHEMA_INEBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
400-431
439-483


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BONN/43)
390-421
429-473



PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82)
398-429
437-481


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
391-418
429-473


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/LEE/40)
399-430
438-482


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
4-35


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40)
51-78


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
389-420
428-472


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86)
393-424
432-476


PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
398-429
437-481


PVNSI_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/PA/79)
171-198


PHEMA_INESI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
398-429
437-481


PRRP2_INBSI
RNA-DIRECTED RNA POL SUB P2
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
157-194


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/USSR/100/83)
391-422
430-474


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87)
400-431
439-483


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85)
393-424
432-476


PVNS2_INBYA
NONSTRUCTURAL PROTEIN N52
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
51-78


PRRP3_INCBE
RNA-DIRECTED RNA POL SUB P3
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
509-536


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
495-571


PVNUC_INCCA
NUCLEOPROTEIN
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
99-126
416-443
451-478


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83)
483-559


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
483-559




GREAT LAKES/1167/54)


PHEMA_INCHY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83)
482-558


PRRP3_INCJJ
RNA-DIRECTED RNA POL SUB P3
INFLUENZA C VIRUS (STRAIN C/JJ/50)
509-536


PVMAT_INCJJ
MATRIX (M) PROTEIN
INFLUENZA C VIRUS (STRAIN C/JJ/50)
151-185


PVNS2_INCJJ
NONSTRUCTURAL PROTEIN NS2
INFLUENZA C VIRUS (STRAIN C/JJ/50)
71-98


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/
496-572




JOHANNESBURG/1/66)


PHEMA_INCKY
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/HYOGO/1/82)
482-558


PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80)
482-558


PHEMA_INCNA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/NARA/82)
482-558


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81)
483-559


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81)
483-559


PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82)
483-559


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47)
483-559


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81)
483-559


PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
41-80


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
93-120
352-379


PENV_MCFF
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING
473-512




MURINE LEUKEMIA VIRUS


PENV_MCFF3
ENV POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE
488-515




LEUKEMIA VIRUS (ISOLATE CI-3)


PENV_MLVMO
ENV POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
502-543


PDNBI_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
584-618


PICI8_MCMVS
PROB PROC &TRANSPORT PRO
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
661-691


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
381-408
441-475


VIEI_MCMVS
IMMEDIATE-EAZLY PROTEIN I
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
261-288


PVE2_PCPVI
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE I
267-294
327-361


PVES_PCPVI
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE I
35-62


PENV_MLVRD
ENV POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
497-538


PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
716-743
805-832


PENV_MLVRK
ENV POLYPROTEIN
RADION MURINE LEUKEMIA VIRUS
497-538




(STRAIN KAPLAN)


PPOL_MLVRK
POL POLYPROTEIN
RADION MURINE LEUKEMIA VIRUS
101-128
190-217




(STRAIN KAPLAN)


PDNBI_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS
435-462
532-559




(STRAIN COLBURN)


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
207-241
1025-
1115-




(STRAIN AGM-27)

1052
1192


PPOLG_HPAVT
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS
203-237




(STRAIN CY-145)


PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
269-310
561-588
592-619
652-679
697-724




(AGM155 ISOLATE)


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
431-458
547-574
637-671




(AGM155 ISOLATE)


PPOL_SIVA2
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
45-72




(AGM266 ISOLATE)


PENV_SIVAG
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
270-301
566-593
597-624
658-685
703-730




(AGM3 ISOLATE)


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
436-463
482-516
642-669




(AGM3 ISOLATE)


PPOL_SIVA3
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
71-98




(AGM385 ISOLATE)


PENV_SIVS4
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
281-308
553-612
642-669
691-718




(F236/SMH4 ISOLATE)


PGAG_SIVS4
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115




(F236/SMH4 ISOLATE)


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
496-523




(F236/SMH4 ISOLATE)


PENV_SIVA1
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
257-291
336-372
548-603
634-708




(ISOLATE AGM/CLONE GRJ-1)


PGAG_SIVA1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
473-507




(ISOLATE AGM/CLONE GRJ-1)


PNEF_SIVA1
NEGATIVE FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
96-137




(ISOLATE AGM/CLONE GRJ-1)


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
478-515




(ISOLATE AGM/CLONE GRJ-1)


VIF_SIVA1
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS
2-36




(ISOLATE AGM/CLONE GRJ-1)


PENV_SIVOD
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
8-35
158-185
589-650
784-816


PPOL_SIVGB
PAL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
227-254
636-670


PENV_SIVMK
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
553-608


PGAG_SIVMK
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
88-115


PPOL_SIYMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
533-560


PENV_SIVML
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE)
549-608


PENV_SIVMI
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
120-150
550-609
671-715




(MM142-83 ISOLATE)


PPOL_SIVMI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
533-560




(MM142-83 ISOLATE)


PENV_SIVM2
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
156-215
277-289




(MM251 ISOLATE)


PENV_SIVSP
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
286-313
554-595
646-722




(PBJ/BC13 ISOLATE)


PGAG_SIVSP
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
88-115




(PBJ/BC13 ISOLATE)


PPOL_SIYSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
499-526




(PBJ/BCI3 ISOLATE)


PGAG_SIVMS
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (STM ISOLATE)
88-115


PENV_SWAT
ENV POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
3-30
268-298
590-617
651-678




(TYO-1 ISOLATE)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
657-691




(TYO-1 ISOLATE)


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
41-68




(TYO-1 ISOLATE)


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
422-470


PPOL_MP
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
574-612
670-697


PGAG_MIMV
GAG POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
222-260


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
109-139


PHELI_VZVD
PROBADLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
490-517
701-728


PRIRI_VZVD
RIBONUC-DIPHOSPH REDUCT
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
119-146



LARGE CHA


PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
1121-
1579-





1158
1609


PUL14_VZVD
HYPOTHETICAL GENE 46 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
64-101


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
380-407


PUL34—VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
112-139


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
107-134
485-512
719-746
976-1003


PUL41_VZVD
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
330-337


PUL43_VZVD
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
129-156
312-349


PUL52_VZVD
PROB DNA REP GENE 6 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
301-337


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
295-322


PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
174-208
495-522


PVTER_VZVD
PROBABLE DNA PACKING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
394-421


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
295-322


PDPOL_WHVI
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS I
285-326


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
290-331


POPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
212-242
290-331


POPOL_WHY8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
211-241
289-330


PDPOL_WHV81
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
212-242
290-331
















TABLE VIII







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY


FOR ALL PROCARYOTIC PROTEINS


















PCGENE
107 × 178 × 4
Prokaryotic Sequences
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA


FILE NAME
PROTEIN
ORGANISM
1
2
3
4
5
6
7
8
9





P120KL_RICRI
120KD SURFACE-EXPOSED PROTEIN
RICKETTSIA RICKETTSII
83-100
240-298
355-382
638-672
746-838
1168-













1202


P17K_RICTY
17KD ANTIGEN PRECURSOR
RICKETTSIA TYPHI
67-94


P190_RICRI
190 KD ANTIGEN PRECURSOR (CELL SURFACE)
RICKETTSIA RICKETTSII
241-268
460-487
607-634
754-781
829-856
904-931
1220-
1544-
1723-











1254
1571
1750





2065-
2131-





2096
2168


P22KD_DESMO
22.6 KD PROTEIN
DESULFUROCOCCUS MOBILIS
25-52
59-89
120-147


P40KD_VIBAN
40 KD PROTEIN PRECURSOR
VIBRIO ANGUILLARUM
153-196


P60IM_ECOLI
60 KD INNER-MEMBRANE PROTEIN
ESCHERICHIA COLI
511-538


P60IM_PROMI
60 KD INNER-MEMBRANE PROTEIN
PROTEUS MIRABILIS
14-41


P65KD_ZYMMO
65 KD PROTEIN
ZYMOMONAS MOBILIS
95-122
444-524


P6PGD_BACSU
PROB 6-
BACILLUS SUBTILIS
24-51
218-246



PHOSPHOGLUCONATE DEHYDROGENASE


P6PGD_ECOLI
6-PHOSPHOGLUCONATE
ESCHERICHIA COLI
205-232



DEHYDROGENASE


P6PGD_SALTY
6-PHOSPHOGLUCONATE DEHYDROGENASE
SALMONELLA TYPHIMURIUM
205-232


PAACA_STAAU
6-AMINOGLYCOSIDE
STAPHYLOCOCCUS AUREUS
450-477



N-ACETYLTRANSFERASE


PAAT_BACSP
ASPARTATE AMINOTRANSFERASE
BACILLUS SP
146-173
185-212


PAAT_ECOLI
ASPARTATE AMINOTRANSPERASE
ESCHERICHIA COLI
351-378


PABC_ECOLI
ABC PROTEIN
ESCHERICHIA COLI
176-203


PABIC_LACLA
ABORTIVE PHAGE RESISTANCE
LACTOCOCCUS LACTIS
85-126
170-204
209-273



PROTEIN ABIC


PACCR_AGRTU
TRANSCRIPTIONAL REPRESSOR ACCR
AGROBACTERIUM TUMEFACIENS
127-154


PACEA_ECOLI
ISOCITRATE LYASE
ESCHERICHIA COLI
398-432


PACON_BACSU
ACONITATE HYDRATASE
BACILLUS SUBTILIS
48-75


PACON_ECOLI
ACONITATE HYDRATASE
ESCHERICHIA COLI
41-68


PACOR_ALCEU
ACETOIN CATABOLISM REG PRO
ALCALIGENES EUTROPHUS
85-112
613-640


PACP_ECOLI
ACYL CARRIER PROTEIN
ESCHERICHIA COLI
4-31


PACRA_ECOLI
ACRIPLAVIN RESISTANCE PROTEIN A
ESCHERICHIA COLI
213-247



PRECURSOR


PACRB_ECOLI
ACRIFLAVIN RESISTANCE PROTEIN B
ESCHERICHIA COLI
520-551


PACRF_ECOLI
ACRIFLAVIN RESISTANCE PROTEIN F
ESCHERICHIA COLI
512-550
726-753


PACT3_STRCO
PUTATIVE KETOACYL REDUCTASE
STREPTOMYCES COELICOLOR
157-184


PACTA_LISMO
ACTIN-ASSEMBLY INDUCING PROTEIN
LISTERIA MONOCYTOGENES
237-264
576-603



PRECURSOR


PACVS_NOCLA
ACV SYNTHETASE
NOCARDIA LACTAMDURANS
3129-





3163


PADAA_BACSU
METPHOSTRIESTER-DNA
BACILLUS SUBTILIS
136-170



ALKYLTRANSFERASE


PADDA_BACSU
ATP-DEPENDENT NUCLEASE SUBUNIT A
BACILLUS SUBTILIS
398-425
454-481
522-556
1005-








1032


PADDB_BACSU
ATP-DEPENDENT NUCLEASE SUBUNIT B
BACILLUS SUBTILIS
257-284
870-903
943-977


PADHI_CLOAB
NADPH-DEPENDENT BUTANOL
CLOSTRIDIUM ACETOBUTYLICUM
284-311



DEHYDROGENASE


PADHA_CLOAB
NADPH-DEPENDENT BUTANOL
CLOSTRIDIUM ACETOBITYLICUM
298-325



DEHYDROGENASE A


PADHE_CLOAB
NADPH-DEPENDENT BUTANOL
CLOSTRIDIUM ACETOBUTYLICUM
298-325



DEHYDROGENASE B


PADHE_CLOAB
ALCOHOL DEHYDROGENASE
CLOSTRIDIUM ACETOBUTYLICUM
653-680
779-806


PADHE_ECOLI
ALCOHOL DEHYDROGENASE
ESCHERICHIA COLI
271-298


PADPIY_MYCGE
140 KD ADHESIN PRECURSOR
MYCOPLASMA GENITALIUM
90-131
697-724
923-950
990-
1169-
1387-








1017
1199
1414


PADPI_MYCPN
ADHESIN P1 PRECURSOR
MYCOPLASMA PNEUMONIAE
1557-





1584


PADT_RICPR
ADP ATP CARRIER PROTEIN
RICKETTSIA PROWAZEKII
276-307


PAERA_AERNY
AEROLYSIN PRECURSOR
AEROMONAS HYDROPHILA
278-305


PAGAL_STRMU
ALPHA-GALACTOSIDASE
STREPTOCOCCUS MUTANS
419-483
597-633


PAGAR_PSEAT
BETA-AGARASE PRECURSOR
PSEUDOMONAS ATLANTICA
26-53


PAGR_STAAU
ACCESSORY GENE REGULATOR PROTEIN
STAPHYLOCOCCUS AUREUS
129-159
165-192


PAIL_YEREN
ATTACH INVAS LOCUS PROTEIN
YERSINIA ENTEROCOLITICA
19-46



PRECURSOR


PAKIH_ECOLI
ASPARTOKINASE I
ESCHERICHIA COLI
3-30
466-493
503-530


PAK2H_ECOLI
ASPARTOICINASE II
ESCHERICHIA COLI
51-78
608-635


PAK2_BACSU
ASPARTATE KINASE II ALPHA
BACILLUS SUBTILIS
266-312



AND BETA SUBUNITS


PAKAB_CORGL
ASPARTATE KINASE ALPHA
CORYNEBACTERIUM GLUTMICUM
5-32



AND BETA SUBUNITS


PALF_ECOLI
FRUCTOSE-BISPHOSPNATE ALDOLASE
ESCHERICHIA COLI
286-316


PALGB_PSEAE
ALGINATE BIOSYN TRANSL REG
PSEUDOMONAS AERUGINOSA
160-194



PROTEIN ALGB


PALGE_PSEAE
ALGINATE PRODUCTION PROTEIN
PSEUDOMONAS AERUGINOSA
349-376



ALGE PRECURSO


PALGP_PSEAE
TRANSCRIPTIONAL REGULATORY
PSEUDOMONAS AERUGINOSA
81-115



PROTEIN ALGP


PALKB_PSEOL
ALKANE-1 MONOOXYGENASE
PSEUDOMONAS OLEOVORANS
115-142


PALKT_PSEOL
RUBREDXIN-NAD(+) REDUCTASE
PSEUDOMONAS OLEOVORANS
138-172
338-365


PALR2_ECOLI
ALANINE RACEMASE CATABOLIC
ESCHERICHIA COLI
9-36



PRECURSOR


PALR_BACST
ALANINE RACEMASE
BACILLUS STEAROTHERMOPHILUS
326-353


PALSR_BACSU
ALS OPERON
BACILLUS SUBTILIS
119-146



REGULATORY PROTEIN


PALYS_BACSP
AUTOLYSIN PRECURSOR
BACILLUS SP
157-187


PALYS_BACSU
AUTOLYSIN PRECURSOR
BACILLUS SUBTILIS
147-191


PALYS_STAAU
AUTOLYSIN
STAPHYLOCOCCUS AUREUS
244-271


PAMIA_STRPN
AMIA PROTEIN PRECURSOR
STREPTOCOCCUS PNEUMONIAE
223-264
297-338
446-473


PAMID_PSECL
AMIDASE
PSEUDOMONAS CHLORORAPHIS
72-99


PAMIE_STRPN
OLIGOPEPTIDE TRANSPORT
STREPTOCOCCUS PNEUMONIAE
187-214



PROTEIN AMIE


PAMPA_ECOLI
AMINOPEPTIDASE A/I
ESCHERICHIA COLI
111-138
199-226


PAMPC_SERMA
BETA-LACTAMASE PRECURSOR
SERRATIA MARCESCENS
231-258


PAMPL_RICPR
CYTOSOL AMINOPEPTIDASE
RICKETTSIA PROWAZEKII
3-47
72-99


PAMPN_ECOLI
AMINOPEPTIDASE N
ESCHERICHIA COLI
655-682


PAMPP_ECOLI
X-PRO AMINOPEPTIDASE
ESCHERICHIA COLI
110-137


PAMPT_THEAQ
AMINOPEPTIDASE T
THERMUS AQUATICUS
281-308


PAMYI_DICTH
ALPHA-AMYLASE 1
DICTYOGLOMUS THERMOPHILUM
507-534


PAMY2_DICTH
ALPHA-AMYLASE 2
DICTYOGLOMUS THERMOPHILUM
151-178
507-534


PAMY2_SALTY
CYLOPLASMIC ALPHA-AMYLASE
SALMONELLA TYPHIMURIUM
70-104


PAMY3_DICTH
ALPHA-AMYLASE 3
DICTYOGLOMUS THERMOPHILUM
280-307


PAMYB_BACCI
BETA-AMYLASE PRECURSOR
BACILLUS CIRCULANS
61-88


PAMYB_BACPO
BETA-AMYLASE
BACILLUS POLYMYXA
60-87
266-293
1143-









1184


PAMYB_CLOTU
BETA-AMYLASE, THERMOPHILIC
CLOSTRIDIUM THEROSULFUROGENES
269-296
378-405
459-486



PRECURSOR


PAMYG_CLOSP
GLUCOAMYLASE PRECURSOR
CLOSTRIDIUM SP
103-148
480-510


PAMYM_BACST
MALTOGENIC ALPHA-AMYLASE
BACILLUS STEAROTHERMOPHILUS
426-453



PRECURSOR


PAMYR_BACS8
RAW-STARCH-DIGESTING AMYLASE
BACILLUS SP
210-237
435-465
615-642


PAMY_AERHY
ALPHA-AMYLASE PRECURSOR
AEROMONAS HYDROPHILA
415-453


PAMY_ALTHA
ALPHA-AMYLASE PRECURSOR
ALTEROMONAS HALOPLANKTIS
166-193


PAMY_BACAM
ALPHA-AMYLASE PRECURSOR
BACILLUS AMYLOLIQUEFACIENS
102-136


PAMY_BACCI
ALPHA-AMYLASE PRECURSOR
BACILLUS CIRCULANS
212-239
437-474


PAMY_BACME
ALPHA-AMYLASE PRECURSOR
BACILLUS MEGATERIUM
61-88
441-482


PAMY_BACSU
ALPHA-AMYLASE PRECURSOR
BACILLUS SUBTILIS
165-205
281-308


PAMY_BUTFI
ALPHA-AMYLASE PRECURSOR
BUTYRIVIBRIO FIBRISOLVENS
377-418
546-573
579-606
795-822


PAMY_CLOAB
PUTATIVE ALPHA-AMYLASE
CLOSTRIDIUM ACETOBUTYLICUM
283-310


PAMY_CLOTU
ALPHA-AMYLASE PRECURSOR
CLOSTRIDIUM THERMOSULFUROGENES
431-468
612-642


PAMY_STRLM
ALPHA-AMYLASE PRECURSOR
STREPTOMYCES LIMOSUS
173-200


PANFA_AZOVI
NITROGEN FIXATION PROTEIN ANFA
AZOTOBACTER VINELANDII
232-259


PANFD_AZOVI
NITROGENASE IRON-IRON
AZOTOBACTER VINELANDII
95-122



PROTEIN ALPHA CHAIN


PANFK_AZOVI
NITROGENASE IRON-IRON
AZOTOBACTER VINELANDII
369-396



PROTEIN BETA CHAIN


PANGR_VIBAN
ANGR PROTEIN
VIBRIO ANGUILLARUM
93-120
169-203


PAPCE_FREDI
PHYCOBILISOME 120 KD
FREMYELLA DIPLOSIPHON
51-78



LINKER POLYPEPTIDE


PAPCE_SYNP6
PHYCOBILISOME LINKER POLYPEPTIDE
SYNECHOCOCCUS SP
37-64
585-615


PAPCE_SYNY4
PHYCOBILISOME 120 KD
SYNECHOCOCCUS SP
52-79



LINKER POLYPEPTIDE


PAPHC_SALTY
ALKYL HYDROPEROXIDE REDUCTASE
SALMONELLA TYPHIMURIUM
62-89



C22 PROTEIN


PAPI_ACHLY
PROTEASE I PRECURSOR
ACHEOMOBACTER LYTICUS
478-505


PAPPC_ECOLI
PROBABLE CYTOCHROME OXIDASE
ESCHERICHIA COLI
118-148



SUBUNIT I


PAPRD_PSEAE
ALKALINE PROTEASE SECRETION
PSEUDOMONAS AERUGINOSE
416-450



PROTEIN APID


PAPRE_PSEAE
ALKALINE PROTEASE SECRETION
PSEUDOMONAS AERUGINOSA
133-193
208-235
247-277



PROTEIN APRE


PAPT_ECOLI
ADENINE PHOSPHORIBOSYL-
ESCHERICHIA COLI
121-148



TRANSFERASE


PAPU_THEET
ALPHA-AMYLASE-PULLULANASE
THERMONANAERBACTER ETHANOLICUS
276-303
347-374
936-982
987-
1210-
1381-








1014
1254
1408



PRECURSOR


PARCA_MYCAR
ARGININE DEIMINASE
MYCOPLASMA ARGININI
60-87
218-245


PARCE_ECOLI
AEROBIC RESPIRATION CONTROL
ESCHERICHIA COLI
102-150
302-329
399-426



PROTEIN ARCB


PARCD_PSEAE
PROBABLE ARGININE/ORNITHINE
PSEUDOMONAS AERUGINOSA
274-301
386-420



ANTIPORTER


PARGA_ECOLI
AMINO-ACID ACETYLTRANSFERASE
ESCHERICHIA COLI
82-109


PARGT_ECOLI
LYS-ARO-ORN-BINDING PROTEIN
ESCHERICHIA COLI
84-111



(LAO) PRECURSOR


PAROA_STAAU
PHOSPHOSHIXIMATE I-
STAPHYLOCOCCUS AUREUS
86-120



CARBOXYVINYLTRANSFER


PAROC_ECOLI
CHORISMATE SYNTHASE
ESCHERICHIA COLI
68-95


PAROC_SALTI
CHORISMATE SYNTHASE
SALMONELLA TYPHI
68-95


PAROD_BACSU
DEHYDROQUINATE DEHYDRATASE
BACILLUS SUBTILIS
49-76


PAROK_ECOLI
SHIKIMATE KINASE I
ESCHERICHIA COLI
84-118


PARP4_STRPY
IGA RECEPTOR PRECURSOR
STREPTOCOCCUS PYOGENES
12-46
127-157
266-324


PARP_ECOLI
ARP PROTEIN
ESCHERICHIA COLI
255-282


PARSA_ECOLI
ARSENICAL PUMP-DRIVING ATPASE
ESCHERICHIA COLI
201-238


PARSB_ECOLI
ARSENICAL PUMP MEMBRANE
ESCHERICHIA COLI
291-318



PROTEIN


PARSB_STAAU
ARSENICAL PUMP MEMBRANE
STAPHYLOCOCCUS AUREUS
27-71
295-322



PROTEIN


PARSB_STAXY
ARSENICAL PUMP MEMBRANE
STAPHYLOCOCCUS XYLOSUS
27/71
295-232



PROTEIN


PARSR_STAAU
ARSENICAL RESIST OPERON
STAPHYLOCOCCUS AUREUS
56-93



REPRESSOR PROTEIN


PARTA_ECOLI
ARTA PROTEIN
ESCHERICHIA COLI
3-30


PARTI_ECOLI
TRANSPORT SYSTEM PROTEIN ARTI
ESCHERICHIA COLI
105-132
213-240


PARTP_ECOLI
TRANSPORT SYSTEM PROTEIN ARTP
ESCHERICHIA COLI
176-206


PASAI_ENTFA
AGGREGATION SUBSTANCE PRECURSOR
ENTEROCOCCUS FAECALIS
195-254
478-505
799-826
859-896


PASNA_ECOLI
ASPARTATE-AMMONIA LIGASE
ESCHERICHIA COLI
127-158


PASNR_ECOLI
ASPARAGINE SYNTHASE B
ESCHERICHIA COLI
450-477


PASNC_ECOLI
REGULATORY PROTEIN ASNC
ESCHERICHIA COLI
116-143


PASPA_BACSU
ASPARTATE AMMONIA-LYASE
BACILLUS SUBTILIS
7-34


PASPA_ECOLI
ASPARTATE AMMONIA-LYASE
ESCHERICHIA COLI
204-236


PASPA_SERMA
ASPARTATE AMMONIA-LYASE
SERRATIA MARCESCENS
204-231


PASPG_BACLI
L-ASPARAGINASE
BACILLUS LICHENIFORMIS
252-288


PASPG_ERWCH
L-ASPARAGINASE PRECURSOR
ERWINIA CHRYSANTHUEMI
188-218


PASPQ_ACIGL
GLUTAMINASE-ASPARAGINASE
ACINETOBACTER GLUTAMINASIFICANS
46-80


PASSY_ECOLI
ARGININOSUCCINATE SYNTHASE
ESCHERICHIA COLI
354-381


PASSY_METBA
ARGININOSUCCINATE SYNTHASE
METHANOSARCINA BARKERI
287-314


PATBP_STAAU
POTENTIAL ATP-BINDING PROTEIN
STAPHYLOCOCCUS AUREUS
41-68
201-245


PATKA_ENTFA
POTASSIUM/COPPER-TRANSPORTING
ENTEROCOCCUS FAECALIS
41-80
347-374



ATPASE A


PATKB_ENTFA
POTASSIUM/COPPER-TRANSPORTING
ENTEROCOCCUS FAECALIS
280-310
450-477



ATPASE B


PATMB_SALTY
MG(2+) TRANSPORT ATPASE,
SALMONELLA TYPHIMURIUM
503-530



P-TYPE


PATP6_SYNP6
ATP SYNTHASE A CHAIN
SYNECHOCOCCUS SP
233-260


PATP6_VIBAL
ATP SYNTHASE A CHAIN
VIBRIO ALGINOLYTICUS
11-38


PATPA_ANASP
ATP SYNTHASE ALPHA CHAIN
ANABAENA SP
9-36
96-130


PATPA_BACME
ATP SYNTHASE ALPHA CHAIN
BACILLUS MEGATERIUM
4-36
453-480


PATPA_ECOLI
ATP SYNTHASE ALPHA CHAIN
ESCHERICHIA COLI
486-513


PATPA_ENTPA
ATP SYNTHASE ALPHA CHAIN
ENTEROCOCCUS FAECALIS
4-36
484-358


PATPA_MYCGA
ATP SYNTHASE ALPHA CHAIN
MYCOPLASMA GALLISEPTICUM
362-409


PATPA_PROMO
ATP SYNTHASE ALPHA CHAIN
PROPIONIGENIUM MODESTUM
6-36


PATPA_RHORU
ATP SYNTHASE ALPHA CHAIN
RHODOSPIRILLUM RUBRUM
165-200
459-486


PATPA_SULAC
ATPASE ALPHA CHAIN
SULFOLOBUS ACIDOCALDARIUS
318-345
562-589


PATPA_SYNPI
ATP SYNTHASE ALPHA CHAIN
SYNECHOCOCCUS SP
7-44


PATPA_SYNP6
ATP SYNTHASE ALPHA CHAIN
SYNECHOCOCCUS SP
8-45
362-389


PATPA_SYNY3
ATP SYNTHASE ALPHA CHAIN
SYNECHOCYSTIS SP
8-37
454-300


PATPA_THEP3
ATP SYNTHASE ALPHA CHAIN
THERMOPHILIC BACTERIUM PS-3
9-36


PATPA_VIBAL
ATP SYNTHASE ALPHA CHAIN
VIBRIO ALGINOLYTICUS
464-513


PATPB_M4ASP
ATP SYNTHASE BETA CHAIN
ANABAENA SP
280-307
370-397


PATPB_BACPI
ATP SYNTHASE BETA CHAIN
BACILLUS FIRMUS
163-190
358-385


PATPB_MYCOA
ATP SYNTHASE BETA CHAIN
MYCOPLASMA GALLISEPTICUM
375-402


PATPB_RHORU
ATP SYNTHASE BETA CHAIN
RHODOSPIRILLUM RUBRUM
359-386


PATPB_SULAC
ATPASE BETA CHAIN
SULFOLOBUS ACIDOCALDARIUS
164-191


PATPB_SYNPI
ATP SYNTHASE BETA CHAIN
SYNECHOCOCCUS SP
381-408


PATPB_SYNP6
ATP SYNTHASE BETA CHAIN
SYNECHOCOCCUS SP
291-318
381-408


PATPB_SYNY3
ATP SYNTHASE BETA CHAIN
SYNECHOCYSTIS SP
381-408


PATPD_ANASP
ATP SYNTHASE DELTA CHAIN
ANABAENA SP
109-139
143-170


PATPD_BACFI
ATP SYNTHASE DELTA CHAIN
BACILLUS FIRMUS
63-90
133-160


PATPD_BACME
ATP SYNTHASE DELTA CHAIN
BACILLUS MEGATERIUM
132-159


PATPD_ENTFA
ATP SYNTHASE DELTA CHAIN
ENTEROCOCCUS FAECALIS
14-41


PATPD_PROMO
ATP SYNTHASE DELTA CHAIN
PROPIONIGENIUM MODESTUM
79-116
118-149


PATPD_RHOBL
ATP SYNTHASE DELTA CHAIN
RHODOPSEUDOMONAS BLASTICA
125-152


PATPD_RHORU
ATP SYNTHASE DELTA CHAIN
RHODOSPIRILLUM RUBRUM
119-146


PATPD_SYNP1
ATP SYNTHASE DELTA CHAIN
SYNECHOCOCCUS SP
100-127


PATPD_SYNY3
ATP SYNTHASE DELTA CHAIN
SYNECHOCYSTIS SP
113-147


PATPD_VIBAL
ATP SYNTHASE DELTA CHAIN
VIBRIO ALGINOLYTICUS
110-137


PATPE_BACF1
ATP SYNTHASE EPSILON CHAIN
BACILLUS FIRMUS
53-80


PATPE_MYCGA
ATP SYNTHASE EPSILON CHAIN
MYCOPLASMA GALLISEPTICUM
99-126


PATPE_PROMO
ATP SYNTHASE EPSILON CHAIN
PROPIONIGENIUM MODESTUM
100-127


PATPE_SYNP1
ATP SYNTHASE EPSILON CHAIN
SYNECHOCOCCUS SP
72-106


PATPF_ANASP
ATP SYNTHASE B CHAIN
ANABAENA SP
17-44
51-78
137-164


PATPF_BACF1
ATP SYNTHASE B CHAIN
BACILLUS FIRMUS
110-151


PATPF_BACME
ATP SYNTHASE B CHAIN
BACILLUS MEGATERIUM
55-85
122-170


PATPF_MYCGA
ATP SYNTHASE B CHAIN
MYCOPLASMA GALLISEPTICUM
82-135
170-197


PATPF_SYNPI
ATP SYNTHASE B CHAIN
SYNECHOCOCCUS SP
15-49
111-159


PATPF_SYNP6
ATP SYNTHASE B CHAIN
SYNECHOCOCCUS SP
12-39
128-155


PATPF_THEP3
ATP SYNTHASE B CHAIN PRECURSOR
THERMOPHILIC BACTERIUM PS-3
50-17


PATPG_ANASP
ATP SYNTHASE GAMMA CHAIN
ANABAENA SP
276-310


PATPG_ECOLI
ATP SYNTHASE GAMMA CHAIN
ESCHERICHIA COLI
253-283


PATPG_MYCGA
ATP SYNTHASE GAMMA CHAIN
MYCOPLASMA GALLISEPTICUM
28-62
92-140


PATFG_RHORU
ATP SYNTHASE GAMMA CHAIN
RHODOSPIRILLUM RUBRUM
270-297


PATFG_SYNPI
ATP SYNTHASE GAMMA CHAIN
SYNECHOCOCCUS SP
280-307


PATPG_SYNY3
ATP SYNTHASE GAMMA CHAIN
SYNECHOCYSTIS SP
96-126
280-307


PATPI_MYCGA
ATP SYNTHASE PROTEIN I
MYCOPLASMA GALLISEPTICUM
133-167


PATPX_ANASP
ATP SYNTHASE B′CHAIN
ANABAENA SP
129-156


PATPX_BACFI
ATP SYNTHASE BETA CHAIN
BACILLUS FIRMUS
162-189
356-383


PATPX_RHORU
ATP SYNTHASE B′CHAIN
RHODOSPIRILLUM RUBRUM
40-74


PATPX_SYNPI
ATP SYNTHASE B′CHAIN
SYNECHOCOCCUS SP
57-110
128-155


PATPX_SYNP6
ATP SYNTHASE B′CHAIN
SYNECHOCOCCUS SP
70-100


PATPX_SYNY3
ATP SYNTHASE B′CHAIN
SYNECHOCYSTIS SP
108-135


PATPZ_BACME
ATP SYNTHASE PROTEIN I
BACILLUS MEGATERIUM
14-62


PATPZ_SYNPI
ATP SYNTHASE PROTEIN I
SYNECHOCOCCUS SP
90-131


PAVRB_PSESG
AVIRULENCE B PROTEIN
PSEUDOMONAS SYRINGAE
184-211
233-260


PBA7I_EUBSP
7-ALPHA-HYDROXYSTEROID
EUBACTERIUM SP
26-53



DEHYDROGENASE


PBA72_EUBSP
7-ALPHA-HYDROXYSTEROID
EUBACTERIUM SP
26-53



DEHYDROGENASE


PBACH_HALHM
HALORHODOPSIN
HALOBACTERIUM HALOBIUM
145-179


PBACH_HALSG
HALORHODOPSIN PRECURSOR
HALOBACTERIUM SP
180-214


PBARA_ECOLI
SENSOR PROTEIN BARA
ESCHERICHIA COLI
122-186


PBAG_STRAG
IGA FC RECEPTOR PRECURSOR
STREPTOCOCCUS AGALACTIAE
92-119
138-204
267-306
343-385
487-524
562-589
1014-











1041


PBAHG_VITSP
BACTERIAL HEMOGLOBIN
VITREOSCILLA SP
119-146


PBAIC_EUBSP
BILE ACID-INDUCIBLE OPERON
EUBACTERIUM SP
423-450



PROTEIN C


PBARA_ECOLI
SENSOR PROTEIN BARA
ESCHERICHIA COLI
334-361
425-455


PBASS_ECOLI
SENSOR PROTEIN BASS
ESCHERICHIA COLI
122-156


PBAT_HALHA
PUTATIVE BACTERIO-OPSIN ACTIVATOR
HALOBACTERIUM HALOBIUM
408-442


PBAX_ECOLI
BAX PROTEIN
ESCHERICHIA COLI
21-64


PBCCP_ECOLI
BIOTIN CARBOXYL CARRIER PROTEIN
ESCHERICHIA COLI
6-35


PBCHH_RROCA
METHYLTRANSFERASE
RHODOBACTER CAPSULATUS
1000-1032


PBcHN_RROCA
PROYOCHLOROPHYLLIDE REDUCTASE
RHODOBACTER CAPSULATUS
249-276



46 KD CHAIN


PBCNS_CLOPE
BACTERIOCIN BCN5
CLOSTRIDIUM PERFRINGENS
72-99
585-646


PBCPA_PROAE
BACTERIOCHLOROPHYLL A PROTEIN
PROSTHECOCHLORIS AESTUARII
63-93


PBCSC_ACEXY
CELLULOSE SYNTHASE OPERON
ACETOBACTER XYLINUM
131-158
1055-



C
PROTEIN

1082


PBCSD_ACEXY
CELLULOSE SYNTHASE OPERON
ACETOBACTER XYLINUM
10-37



C PROTEIN


PBENA_ACICA
BENZOATE 1,2-DIOXYGENASE
ACINETOBACTER CALCOACETICUS
190-217



ALPHA SUBUNIT


PBETT_ECOLI
HIGH AFFINITY CHOLINE
ESCHERICHIA COLI
243-270



TRANSPORT PROTEIN


PBEXA_HAEIN
BEXA PROTEIN
HAEMOPHILUS INFLUENZAE
23-50


PBEXC_HAEIN
BEXC PROTEIN
HAEMOPHILUS INFLUENZAE
157-184
226-253


PBEXC_HEBIN
BEXO PROTEIN
HAEMOPHILUS INFLUENZAE
205-239


PBFR_NITWI
BACTERIOPERRITIN
NITROBACTER WINOGRADSKYI
8-35


PBGA2_ECOLI
EVOLVED BETA-GALACTOSIDASE
ESCHERICHIA COLI
955-985



ALPHA-SUBUNIT


PBGAL_BACST
BETA-GALACTOSIDASE
BACILLUS STEAROTHERMOPHILUS
599-633


PBGAL_CLOAB
BETA-GALACTOSIDASE
CLOSTRIDIUM ACETOBUTYLICUM
824-851


PBGAL_CLOTU
BETA-GALACTOSIDASE
CLOSTRIDIUM THERMOSULFUROGENES
161-191


PBGAL_KLEPN
BETA-GALACTOSIDASE
KLEBSIELLA PNEUMONIA
245-272


PBGAL_LACDE
BETA-GALACTOSIDASE
LACTOBACILLUS DELBRUECKII
305-332


PBGAL_STRTR
BETA-GALACTOSIDASE
STREPTOCOCCUS THERMOPHILUS
188-215


PBGAL_SULSO
BETA-GALACTOSIDASE
SULFOLOBUS SOLFATARICUS
59-86
179-206


PBGAM_LEULA
BETA-GALACTOSIDASE SMALL
LEUCONOSTOC LACTIS
129-156



SUBUNIT


PBGAM_SULSO
BETA-GALACTOSIDASE
SULFOLOBUS SOLFATARICUS
106-140


POGLA_CLOTM
BETA-GLUCOSIDASE A
CLOSTRIDIUM THERMOCELLUM
353-380
418-445


PBGLB_CLOTM
THERMOSTABLE BETA-GLUCOSIDASE B
CLOSTRIDIUM THERMOCELLUM
259-286
375-409
554-581
631-665


PBGLR_ECOLI
BETA-GLUCURONIDASE
ESCHERICHIA COLI
464-494
536-563


PBGLS_AGRSP
BETA-GLUCOSIDASE
AGROBACTERIUM SP
421-448


PBGLS_BUTFI
BETA-GLUCOSIDASE A
BUTYRIVIBRIO FIBRISOLVENS
85-112
435-462
692-719
738-765


PBIN3_STAAU
POTENTIAL DNA-INVERTASE BIND
STAPHYLOCOCCUS AUREUS
60-87


PBINL_STAAU
TRANSPOSON TN552 RESOLVASE
STAPHYLOCOCCUS AURIUS
163-197


PBINR_STAAU
DNA-INVERTASE BINR
STAPHYLOCOCCUS AUREUS
163-190


PB1OA_BACSH
AMINOTRANSFERASE
BACILLUS SPHAERICUS
33-60


PBIOB_BACSH
BIOTIN SYNTHETASE
BACILLUS SPHAERICUS
145-172


PBIOB_ECOLI
BIOTIN SYNTHETASE
ESCHERICHIA COLI
130-157


PBIOD_BACSH
DETHIOBIOTIN SYNTHASE
BACILLUS SPHAERICUS
144-171


PBLAI_BACCE
BETA-LACTAMASE PRECURSOR, TYPE I
BACILLUS CEREUS
91-118
275-305


PELAI_HAEIN
BETA-LACTAMASE ROB-I PRECURSOR
RAEMOPHILUS INFLUENZAE
152-179
204-231


PBLA2_BACCE
BETA-LACTAMASE PRECURSOR, TYPE II
BACILLUS CEREUS
18-67
201-228


PBLA2_BACSP
BETA-LACTAMASE PRECURSOR, TYPE II
BACILLUS SP
18-67


PBLA3_BACCE
BETA-LACTAMASE PRECURSOR, TYPE III
BACILLUS CEREUS
35-83
95-129


PBLA4_PSEAE
BETA-LACTAMASE PSE-4 PRECURSOR
PSEUDOMONAS AERUGINOSA
19-50


PBLAB_BACCE
BETA-LACTAMASE PRECURSOR, TYPE II
BACILLUS CEREUS
20-66
200-227


PELAB_BACFR
BETA-LACTAMASE PRECURSOR, TYPE II
BACTEROIDES FRAGILIS
22-49


PBLAC_BACCE
BETA-LACTAMASE PRECURSOR, TYPE I
BACILLUS CEREUS
93-120
276-303


PBLAC_BACLI
BETA-LACTAMASE PRECURSOR
BACILLUS LICHENIFORMIS
47-74
86-115


PBLAC_PROMI
BETA-LACTAMASE PRECURSOR
PROTEUS MIRABILIS
191-221


PBLAC_PROVU
BETA-LACTAMASE
PROTEUS VULGARIS
4-38
240-267


PBLAC_STRAL
BETA-LACTAMASE PRECURSOR
STREPTOMYCES ALBUS G
43-70


PBLAD_KLEPN
BETA-LACTAMASE PRECURSOR
KLEBSIELLA PNEUMONIAE
121-148


PBLAI_STAAU
PENICILLINASE REPRESSOR
STAPHYLOCOCCUS AUREUS
19-74
99-126


PBLAO_ECOLI
BETA-LACTAMASE PRECURSOR
ESCHERICHIA COLI
118-166
235-262


PBLAP_ECOLI
BETA-LACTAMASE PSE-2 PRECURSOR
ESCHERICHIA COLI
155-196


PBLAR_BACLI
REGULATORY PROTEIN BLARI
BACILLUS LICHENIFORMIS
129-156
515-552


PBLAR_STAAU
REGULATORY PROTEIN BLARI
STAPHYLOCOCCUS AUREUS
87-114
122-161
234-261
281-312
503-539


PBMP_TREPA
BASIC MEMBRANE PROTEIN PRECURSOR
TREPONEMA PALLIDUM
312-346


PBMR_BACSU
MULTIDRUG RESISTANCE PROTEIN
BACILLUS SUBTILIS
277-304


PBNZA_PSEPU
BENZENE 1,2-DIOXYGENASE
PSEUDOMONAS PUTIDA
36-63



ALPHA SUBUNIT


PBNZB_PSEPU
BENZENE 1,2-DIOXYGENASE
PSEUDOMONAS PUTIDA
119-153



BETA SUBUNIT


PBNZD_PSEPU
P4 SUBUNIT
PSEUDOMONAS PUTIDA
179-213


PBPS2_DESAM
BPS2 PROTEIN
DESULFUROLOBUS AMBIVALENS
157-237
242-290
311-355
391-425
543-573


PERAB_PSEAE
CARRIER PROTEIN
PSEUDOMONAS AERUGINOSA
260-287
313-340


PBRAE_PSEAE
TRANSPORT PROTEIN BRAE
PSEUDOMONAS AERUGINOSA
254-281


PBRAO_PSEAE
BRAG PROTEIN
PSEUDOMONAS AERUGINOSA
7-34


PBTUB_ECOLI
VITAMIN B12 RECEPTOR PRECURSOR
ESCHERICHIA COLI
439-466


PBTUE_ECOLI
VITAMIN B12 TRANSPORT
ESCHERICHIA COLI
6-33



PERIPLASMIC PROTEIN


PBVGA_BORPE
TRANSCRIPTION REGULATOR BVGA
BORDETELLA PERTUSSIS
174-205




BORDETELLA BRONCHISEPTICS


PBVGB_BORPE
PERIPLASMIC PROTEIN
BORDETELLA PERTUSSIS
116-143



BVGB PRECURSOR


PBVGC_BORPE
SENSOR PROTEIN BVOC
BORDETELLA PERTUSSIS
39-66
202-229


PEVGS_BORBR
VIRULENCE BVGS PROTEIN
BORDETELLA BRONCHISEPTICA
113-143
341-368
501-531



PRECURSOR


PBXA_CLOBO
BOTULINUM NEUROTOXIN TYPE A
CLOSTRIDIUM BOTULINUM
313-340
686-729
733-762
815-842
851-895
968-995
1159-



PRECURSOR








1207


PBXB_CLOBO
BOTULINUM NEUROTOXIN TYPE B
CLOSTRIDIUM BOTULINUM
666-693
720-762
802-832
853-890
1004-
1058-



PRECURSOR





1031
1089


PBXC1_CLOBO
BOTULINUM NEUROTOXIN TYPE
CLOSRTIDIUM BOTULINUM
86-113
314-341
730-773
798-825
850-892



C1 PRECURSOR


PBXD_CLOBO
BOTULINUM NEUROTOXIN TYPE
CLOSTRIDIUM BOTULINUM
473-500
526-576
727-770
804-831
847-892
906-963
1060-



D PRECURSOR







1087


PBXE_CLOBO
BOTULINUM NEUROTOXIN TYPE
CLOSTRIDIUM BOTULINUM
254-291
350-381
704-753
773-811
890-917
992-
1115-



E PRECURSOR






1019
1149


PBXE_CLOBU
BOTULINUM NEUROTOXIN TYPE
CLOSTRIDIUM BUTYRICUM
254-291
350-381
704-753
774-808
890-917
992-
1115



E PRECURSOR






1019
1149


PBXF_CLOBO
BOTULINUM NEUROTOXIN TYPE
CLOSTRIDIUM BOTULINUM
669-710
735-772
892-919
1013-
1095-
1183-



F PRECURSOR




1040
1122
1210


PC550_MICAE
CYTOCHROME C550
MICROCYSTIS AERUGINOSA
3-30


PCADA_BACFI
PROBABLE CADMIUM-TRANSPORTING
BACILLUS FIRMUS
30-57
100-131
165-192
276-306
533-567



ATPASE


PCADA_STAAU
PROBABLE CADIUM-TRANSPORTING
STAPHYLOCOCCUS AUREUS
282-309
536-570



ATPASE


PCADC_ECOLI
TRANSCRIPTIONAL ACTIVATOR CADC
ESCHERICHIA COLI
54-85
412-443


PCAFA_YERPE
F1 CAPSULE ANCHORING PROTEIN
YERSINIA PESTIS
203-240
416-457
530-557
619-646



PRECURSOR


PCAPA_BACAN
CAPA PROTEIN
BACILLUS ANTHRACIS
108-138


PCAPB_BACAN
CAPB PROTEIN
BACILLUS ANTHRACIS
36-70


PCAPP_ANANI
PHOSPHOENOLPYRUVATE CARBOXYLASE
ANACYSTIS NIDULANS
248-293


PCAPP_ANASP
PHOSPHOENOLPYRUVATE CARBOXYLASE
ANABAENA SP
98-125
157-184
687-728


PCAPP_CORGL
PHOSPHOENOLPYRUVATE CARBOXYLASE
CORYNEBACTERIUM GLUTMICUM
15-42


PCAPP_ECOLI
PHOSPHOENOLPYRUVATE CARBOXYLASE
ESCHERICHIA COLI
35-62


PCARA_BACSU
CARBAMOYL-PHOSPHATE SYNTHASE
BACILLUS SUBTILIS
274-319


PCARB_BACSU
CARBAMOYL-PHOSPHATE SYNTHASE
BACILLUS SUBTILIS
790-831


PCARB_ECOLI
CARBAMOYL-PHOSPHATE SYNTHASE
ESCHERICHIA COLI
454-481



LARGE CHAI


PCAT2_STAAU
CHLORAMPHENICOL
STAPHYLOCOCCUS AUREUS
7-34
87-114



ACETYLTRANSFERASE


PCAT3_STAAU
CHLORAMPHENICOL
STAPHYLOCOCCUS AUREUS
7-34
87-114



ACETYLTRANSFERASE


PCATA_ACICA
CATECHOL 1,2-DIOXYGENASE
ACINETOBACTER CALCOACETICUS
31-65


PCATA_BACST
PEROXIDASE/CATALASE
BACILLUS STEAROTHERMOPHILUS
440-470


PCATA_ECOLI
CATALASE HPI
ESCHERICHIA COLI
579-606


PCATA_MICLU
CATALASE
MICROCOCCUS LUTEUS
453-480


PCATA_SALTY
CATALASE HPI
SALMONELLA TYPHMURIUM
515-542
580-607


PCATE_ECOLI
CATALASE HPII
ESCHERICHIA COLI
175-202


PCAT_CAMCO
CHLORAMPHENICOL ACETYLTRANSFERASE
CAMPYLOBACTER COLI
84-111


PCAT_CLOBU
CHLORAMPHENICOL ACETYLTRANSFERASE
CHLOSTRIDIUM BUTYRICUM
88-115


PCAT_ECOLI
CHLORAMPHENICOL
ESCHERICHIA COLI
92-119



ACETYLTRANSFERASE


PCAT_PROM
CHLORAMPHENICOL
PROTEUS MIRABILIS
92-119



ACETYLTRANSFERASE


PCAT_STAIN
CHLORAMPHENICOL
STAPHYLOCOCCUS INTERMEDIUS
7-34
87-114



ACETYLTRANSFERASE


PCAT_STRAG
CHLORAMPHENICOL
STREPTOCOCCUS AGALACTIAE
7-34
87-114



ACETYLTRANSFERASE


PCBHE_COXBU
CBHE PROTEIN
COXIELLA BURNETII
209-236


PCBPT_THEVU
CARBOXYPEPTIDASE T PRECURSOR
THERMOACTINOMYCES VULGARIS
48-75


PCCA_ECOLI
TRNA NUCLEOTIDYLTRANSFERASE
ESCHERICHIA COLI
376-403


PCCMK_SYNP7
CO2 CONC MECH PROTEIN CCMK
SYNECHOCOCCUS SP
29-56


PCCMM_SYNP7
CO2 CONC MECH PROTEIN CCMM
SYNECHOCOCCUS SP
212-256
331-372
445-486


PCDAS_THEET
CYCLOMALTODEXTRINASE
THERMOANAEROBACTER ETHANOLICUS
305-332


PCDG1_BACMA
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS MACERANS
439-466
616-643



PRECURSOR


PCDG2_BACMA
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS MACERANS
210-251
436-466
615-642



PRECURSOR


PCDGT_BACCI
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS CIRCULANS
217-244
442-472
594-651



PRECURSOR


PCDGT_BACLI
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS LICHHENIFORMIS
217-244
442-472
594-647



PRECURSOR


PCDGT_BACLOH
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS OHBENSIS
430-471



PRECURSOR


PCDGT_BACSO
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS SP
210-237
435-462
615-642



PRECURSOR


PCDGT_BACS2
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS SP
409-471



PRECURSOR


PCDGT_BACS3
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS SP
210-237
435-462
614-641



PRECURSOR


PCDGT_BACSP
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS SP
210-237
435-465
615-642



PRECURSOR


PCDGT_BACSS
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS SP
217-244
442-472
594-651



PRECURSOR


PCDGT_BACST
CYCLOMALTODEXT GLUCANOTRANS
BACILLUS STEAROTHERMOPHILUS
586-646



PRECURSOR


PCDOT_KLEPN
CYCLOMALTODEXT GLUCANOTRANS
KLEBSIELLA PNEUMONIAE
212-239


PCEAI_ECOLI
COLICIN E1 PROTEIN
ESCHERICHIA COLI
44-71
285-326


PCEAI_SHISO
COLICIN E1* PROTEIN
SHIGELLA SONNEI
44-71
284-325
413-440


PCEA2_ECOLI
COLICIN E2
ESCHERICHIA COLI
334-368


PCEA3_ECOLI
COLICIN E3
ESCHERICHIA COLI
334-368


PCEA6_ECOLI
COLICIN E6
ESCHERICHIA COLI
334-368


PCEAB_ECOLI
COLICIN B
ESCHERICHIA COLI
283-341


PCEAD_ECOLI
COLICIN D
ESCHERICHIA
284-311


PCEAM_ECOLI
COLICIN M
ESCHERICHIA COLI
178-227


PCEAN_ECOLI
COLICIN N
ESCHERICHIA COLI
119-146
173-200


PCEA_CITFR
COLICIN A
CITROBACTER FREUNDII
228-258


PCEFD_STRCL
ISOPENICILLIN N EPIMERASE
STREPTOMYCES CLAVULIGERUS
370-397


PCEIA_ECOLI
COLICIN IA PROTEIN
ESCHERICHIA COLI
68-95
255-282
378-412
415-452


PCEIB_ECOLI
COLICIN IB PROTEIN
ESCHERICHIA COLI
68-95
255-282
378-412
415-452


PCELA_ACEXY
UTP URIDYLYLTRANSFERASE
ACETOBACTER XYLINUM
59-89


PCELA_ECOLI
PROTEIN CELA
ESCHERICHIA COLI
76-103


PCFAA_ECOLI
CFA/1 FIMBRIAL SUBUNIT A
ESCHERICHIA COLI
27-58



PRECURSOR


PCFAC_ECOLI
CFA/1 FIMBRIAL SUBUNIT C
ESCHERICHIA COLI
138-187
388-456
561-595



PRECURSOR


PCFAD_ECOLI
CFA/1 FIMBRIAL SUBUNIT D
ESCHERICHIA COLI
133-160


PCFAE_ECOLI
CFA/1 FIMBRIAL SUBUNIT E
ESCHERICHIA COLI
180-207
244-271


PCH10_ACYPS
10 KD CHAPERONIN
ACYRTHOSIPHON PISUM SYMBIOTIC BACTERIU
57-95


PCH10_BACSU
10 KD CHAPERONIN
BACILLUS SUBTILIS
66-93


PCH10_CHLTR
10 KD CHAPERONIN
CHALMYDIA TRACHOMATIS
64-91


PCH10_ECOLI
10 KD CHAPERONIN
ESCHEAICHIA COLI
57-84


PCH10_HAEDU
10 KD CHAPERONIN
HAEMOPHILUS DUCREYI
68-95


PCH10_LEGMI
10 KD CHAPERONIN
LEGIONELLA MICOADEI
57-84


PCH10_RICTS
10 KD CHAPERONIN
RICKETTSIA TSUTSUGAMUSHI
65-92


PCH10_THEPi
10 KD CHAPERONIN
THERMOPHILIC BACTERIUM PS-3
66-93


PCH60_ACYPS
60 KD CHAPERONIN
ACYRTHOSIPHON PISUM SYMBIOTIC BACTERJU
341-382


PCH60_AGRTU
60 KD CHAPERONIN
AGROBACTERIUM TUMEFACIENS
117-163
339-370
425-466


PCH60_AMOPS
60 KD CHAPERONIN
AMOEBA PROTEUS SYMBIOTIC BACTERIUM
299-333


PCH60_BACSU
60 KD CHAPERONIN
BACILLUS SUBTILIS
298-332
337-364


PCH60_BORBU
60 KD CHAPERONIN
BORRELIA BURODORFERI
125-163
299-368


PCH60_BRUAB
60 KD CHAPERONIN
BRUCELLA ABORTUS
117-144
339-366


PCH60_CHLPN
60 KD CHAPERONIN
CHALMYDIA PNEUMONIAE
4-31


PCH60_CHLTR
60 KD CHAPERONIN
CHALMYDIA TRACHOMATIS
4-31


PCH60_CHRVI
60 KD CHAPERONIN
CHROMATIUM VINOSUM
300-327


PCH60_CLOAB
60 KD CHAPERONIN
CLOSTRIDIUM ACETOBUTYLICUM
238-332
337-364
455-482


PCH60_CLOPE
60 KD CHAPERONIN
CLOSTRIDIUM PERPRINGENS
337-368
417-444


PCH60_COXBU
60 KD CHAPERONIN
COXIELLA BURNETII
300-327
348-382


PCH60_HAEDU
60 KD CHAPERONIN
HAEMOPHILUS DUCREYI
339-366
417-444


PCH60_LEGMI
60 KD CHAPERONIN
LEGIONELLA MICDADEI
299-333


PCH60_LEGPN
60 KD CHAPERONIN
LEGIONELLA PNEUMOPHILA
298-332
452-479


PCH60_MYCLE
60 KD CHAPEPONIN
MYCOBACTEPIUM LEPRAE
125-152
236-263
337-364


PCH60_MYCTU
60 KD CHAPERONIN
MYCOBACTERIUM TUBERCULOSIS &BOVIS
125-152
337-364


PCH60_PSEAE
60 KD CHAPERONIN
PSEUDOMONAS AERUGINOSA
339-366


PCH60_RHILV
60 KD CHAPERONIN
RHIZOBIUM LEGUMINOSARUM
117-163
322-370
425-466


PCH60_RICTS
60 KD CHAPERONIN
RICKETTSIA TSUTSUGAMUSHI
103-130
293-336
360-394


PCH60_SYNP7
60 KD CHAPERONIN
SYNECHOCOCCUS SP
308-335
337-380


PCH60_SYNY3
60 KD CHAPERONIN
SYNECHOCYSTIS SP
338-365
455-489


PCH60_THEP3
60 KD CHAPERONIN
THERMOPHILIC BACTERIUM PS-3
337-364


PCH62_STEAL
60 KD CHAPERONIN 2
STREPTOMYCES ALBUS G
116-148
337-364


PCHB_VIBHA
N,N-DIACETYLOUTOBIASE PRECURSOR
VIBRIO HARVEYI
21-48
772-799


PCHEA_BACSU
CHEMOTAXIS PROTEIN CHEA
BACILLUS SUBTILIS
373-400
590-617


PCHEA_ECOLI
CHEMOTAXIS PROTEIN CHEA
ESCHERICHIA COLI
256-286


PCHEA_SALTY
CHEMOTAXIS PROTEIN CHEA
SALMONELLA TYPHIMURIUM
162-197


PCHEA_BACSU
CHEMOTAXIS PROTEIN
BACILLUS SUBTILIS
124-151



METHYLTRANSFERASE


PCHEW_ECOLI
PURINE-BINDING CHEMOTAXIS PROTEIN
ESCHERICHIA COLI
68-115


PCHEW_SALTY
PURINE-BINDING CHEMOTAXIS PROTEIN
SALMONELLA TYPHIMURIUM
88-115


PCHEY_ECOLI
CHEMOTAXIS PROTEIN CHEY
ESCHERICHIA COLI
22-49


PCHEY_SALTY
CHEMOTAXIS PROTEIN CHEY
SALMONELLA TYPHIMURIUM
22-49


PCHI1_BACCI
CHITINASE A PRECURSOR
BACILLUS CIRCULANS
491-518
566-593


PCHIA_ALTSO
CHITINASE A PRECURSOR
ALTEROMONAS SP
345-372


PCHIA_SERMA
CHITINASE A PRECURSOR
SERRATIA MARCESCENS
346-373


PCHID_BACCI
CHITINASE D PRECURSOR
BACILLUS CIRCULANS
102-161
189-216


PCHIT_SACER
CHITINASE
SACCHAROPOLYSPORA ERYTHRAEA
92-119


PCHIT_STRPL
CHITTINASE 63 PRECURSOR
STREPTOMYCES PLICATUS
250-284


PCHMU_BACSU
CHORISMATE MUTASE
BACILLUS SUBTILIS
3-37


PCHOD_BREST
CHOLESTEROL OXIDASE PRECURSOR
BREVIBACTERIUM STEROLICUM
263-290


PCHTA_VIBCH
CHOLERA ENTEROTOXIN, A
VIBRIO CHOLERAE
79-106



CHAIN PRECURSOR


PCHVA_AGRTU
BETA-(1→2)GLUCAN EXPORT
AGROBACTERIUM TUMEFACIENS
4-31
181-208



PROTEIN


PCHVE_AGRTU
RECEPTOR PROTEIN CHVE
AGROBACTERIUM TUMEFACIENS
100-127



PRECURSOR


PCIR1_CITFR
CITROLYSIN PROTEIN I
CITROBACTER FREUNDII
435-462


PCIRA_ECOLI
COLICIN I RECEPTOR PRECURSOR
ESCHERICHIA COLI
146-173


PCISA_BACSU
PUTATIVE DNA RECOMBINASE
BACILLUS SUBTILIS
378-405


PCISY_ACIAN
CITRATE SYNTHASE
ACINETOBACTER ANITRATUM
143-170


PCISY_BACCO
CITRATE SYNTHASE
BACILLUS COAGULANS
24-51


PCITA_SALTY
CITRATE-PROTON SYMPORT
SALMONELLA TYPHIMURIUM
154-181


PCITN_KLEPN
CITRATE-SODIUM SYMPORT
KLEBSIELLA PNEUMONIAE
194-221


PCITN_SALDU
CITRATE-SODIUM SYMPORT
SALMONELLA DUBLIN
194-221


PCITN_SALPU
CITRATE-SODIUM SYMPORT
SALMONELLA PULLORUM
194-221


PCLCA_PSEPU
CHLOROCATECHOL 1,2-DIOXYGENASE
PSEUDOMONAS PUTIDA
13-36


PCLDI_ECOLI
CHAIN LENGTH DETERMINANT PROTEIN
ESCHERICHIA COLI
133-167


PCLD2_ECOLI
CHAIN LENGTH DETERMINANT PROTEIN
ESCHERICHIA COLI
178-212
250-277


PCLD_SALTY
CHAIN LENGTH DETERMINANT PROTEIN
SALMONELLA TYOHIMURIUM
96-127
151-212


PCLOS_CLOHI
ALPHA-CLOSTRIPAIN PRECURSOR
CLOSTRIDIUM HISTOLYTICUM
30-58
497-524


PCLPA_ECOLI
ATP-BINDING SUBUNIT CLPA
ESCHERICHIA COLI
655-695


PCLPA_RHOBL
CLPA HOMOLOG PROTEIN
RHODOPSEUDOMONAS BLASTICA
439-466


PCLPB_BACNO
CLPB HOMOLOG PROTEIN
BACTEROIDES NODOSUS
116-157
442-476
558-595


PCLPB_ECOLI
CLPB PROTEIN
ESCHERICHIA COLI
444-489
563-590


PCLPX_AZOVI
CLPX HOMOLOG PROTEIN
AZOTOBACTER VINELANDII
215-242
332-359


PCLPX_ECOLI
ATP-BINDING SUBUNIT CLPX
ESCHERICHIA COLI
255-282


PCNI6_ECOLI
2′,3′-CYCLIC-NUC 2′-PHOSPHODIESTERASE
ESCHERICHIA COLI
50-77



PRECURSOR


PCODA_ECOLI
CYTOSINE DEAMINASE
ESCHERICHIA COLI
102-129


PCOMI_BACSU
A COMPETENCE PROTEIN I
BACILLUS SUBTILIS
108-135
186-213


PCOMO_BACSU
COMPETENCE REGULATORY PROTEIN
BACILLUS SUBTILIS
154-239


PCOP6_STAAU
COP-6 PROTEIN
STAPHYLOCOCCUS AUREUS
7-53


PCOPB_PSESM
COPPER RESISTANCE PROTEIN B
PSEUDOMONAS SYRINGAE
140-167



PRECURSOR


PCORA_ECOLI
MAGNESIUM/COBALT TRANSPORT
ESCHERICHIA COLI
134-161



PROTEIN CORA


PCORA_SALTY
MAGNESIUM/COBALT TRANSPORT
SALMONELLA TYPHIMURIUM
134-161



PROTEIN CORA


PCOTE_BACSU
SPORE COAT PROTEIN E
BACILLUS SUBTILIS
42-92


PCOXI_BRAJA
CYTOCHROME C OXIDASE POLYPEPTIDE I
BRADYRHIZOBIUM JAPONICUM
380-407


PCOXI_PARDE
CYTOCHROMB C OXIDASE POLYPEPTIDE I
PAPACOCCUS DENITRIFICANS
383-410


PCOXI_RHOSH
CYTOCHROME C OXIDASE POLYPEPTIDE I
RHODOBACTER SPHAEROIDES
396-423


PCOXX_BACFI
OXIDASE ASSEMBLY FACTOR
BACILLUS FIRMUS
36-63


PCOXX_BACSU
OXIDASE ASSEMBLY FACTOR
BACILLUS SUBTILIS
49-76


PCPPB_NEIGO
CRYPTIC PLASMID PROTEIN B
NEISSERIA GONORRHOEAE
72-99
165-209


PCPSB_ECOLI
MANNOSE-1-PHOSPHATE
ESCHERICHIA COLI
309-336



GUANYLYLTRANSFERAS


PCPSB_SALTY
MANNOSE-1-PHOSPHATE
SALMONELLA TYPHIMURIUM
311-338



GUANYLYLTRANSFERAS


PCPXA_ECOLI
SENSOR PROTEIN CPXA
ESCHERICHIA COLI
254-281


PCPXG_STRSQ
CYTOCHROMB P450 105CI
STREPTOMYCES SP
157-184


PCPXJ_SACER
6-DEOXYERYTHRONOLIDE B
SACCHAROPOLYSPORA ERYTHRAEA
233-260



(DEB) HYDROXYLASE


PP2OI_BACSU
CYTOIZHROME P450 109
BACILLUS SUBTILIS
240-283


PCPXN_ANASP
PROBABLE CYTOCHROME P450
ANABAENA SP
98-125


PCR27_BACTI
27 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
153-187


PCR27_BACTM
27 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
153-187


PCR4I_BACSH
1.9 KD INSECTICIDAL TOXIN
BACILLUS SPHAERICUS
276-308


PCR4Z_BACSH
1.9 KD INSECTICIDAL TOXIN
BACILLUS SPHAERICUS
276-308


PCR43_BACSH
41.9 KD INSECTICIDAL TOXIN
BACILLUS SPHAERICUS
276-308


PCR7O_BACTD
70 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
207-234
252-279
429-463


PCR7O_BACTO
75 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
57-84
125-159
427-464


PCR70_BACTT
70 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
199-226
244-271
421-455


PCR71_BACTK
70 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
93-133
191-218
552-615


PCR72_BACTI
72 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
74-111
383-414


PCR72_BACTK
70 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
93-133
191-218
225-593


PCR77_BACTI
77 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
308-335
502-529


PCREC_ECOLI
SENSOR PROTEIN CREC
ESCHERICHIA COLI
103-130


PCRED_ECOLI
INNER MEMBRANE PROTEIN CRED
ESCHERICHIA COLI 
94-121


PCRP_ECOLI
CATABOLITE GENE ACTIVATOR
ESCHERICHIA COLI &
26-53
127-154




SHIGELLA FLEXNERI


PCRP_SALTY
CATAIIOLITE GENE ACTIVATOR
SALMONELLA TYPHIMURIUM
26-53
127-154




KLEBSIELLA AEROGENES


PCRTI_ERWHE
PHYTOENE DEHYDROGENASE
ERWINIA HERBICOLA
231-258


PCRTI_RHOCA
PHYPOENE DEHYDROGENASE
RHODOBACTER CAPSULATUS
389-416


PCRTJ_RHOCA
CRTJ PROTEIN
RHODOBACTER CAPSULATUS
133-160
334-361
431-458


PCRYS_BACTA
132 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
721-755
875-902


PCRYS_BACTB
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
730-771
865-892
1053-







1080


PCRYS_BACTE
133 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
736-770
890-917


PCRYS_BACTI
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
218-252
701-728
775-802


PCRYS_BACTK
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
737-771
865-892
1053-







1080


PCRYS_BACTS
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
736-770
890-917


PCRYT_BACTA
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
730-771
865-892
1053-







1080


PCRYT_BACTE
134 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
745-779
899-926


PCRYT_BACTI
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
217-251
354-384
701-728
775-802


PCRYT_BACTK
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
737-771
865-892


PCRYU_BACTA
135 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
736-770
890-917


PCRYU_BACTI
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
217-251
700-727
774-801


PCRYU_BACTK
131 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
738-772
866-893
1054-







1081


PCRYV_BACTA
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
737-771
865-892
1053-







1080


PCRYV_BACTI
135 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
110-151
745-772
819-846


PCRYV_BACTK
133 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
736-770
890-917


PCRYW_BACTA
130 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
745-779


PCRYW_BACTK
133 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
608-659
662-696
892-919


PCRYX_BACTK
139 KD CRYSTAL PROTEIN
BACILLUS THURINGIENSIS
92-119
227-254
605-632
783-817
937-964


PS532_ECOLI
CS3 PILI SYNTHESIS 63 KD PROTEIN
ESCHERICHIA COLI
42-69
226-253
299-317
344-378


PS33_ECOLI
CS3 PILI SYNTHESIS 48 KD PROTEIN
ESCHERICHIA COLI
90-117
154-181
208-242


PC534_ECOLI
CS3 PILI SYNTHESIS 33 KD PROTEIN
ESCHERICHIA COLI
20-47
74-108


PCSG_HALHA
CELL SURFACE GLYCOPROTEIN
HALOBACTERIUM HALOBIUM
256-283
584-611



PRECURSOR


PCSG_HALVO
CELL SURFACE GLYCOPROTEIN
HALOBACTERIUM VOLCANII
143-170
237-271



PRECURSOR


PCSG_METFE
CELL SURFACE GLYCOPROTEIN
METHANOTHERMUS FERVIDUS
59-107



PRECURSOR


PCSG_METSC
CELL SURFACE GLYCOPROTEIN
METHANOTHERMUS SOCIABILIS
59-107



PRECURSOR


PCSOB_ECOLI
CS1 FIMBRIAL SUBUNIT B
ESCHERICHIA COLI
25-56



PRECURSOR


PCTFA_CLOAB
COA-TRANSFERASE SUBUNIT A
CLOSTRIDIUM ACETOBUTYLICUM
118-145


PCTFB_CLOAB
COA-TRANSPERASE SUBUNIT B
CLOSTRIDIUM ACETOBUTYLICUM
174-208


PCTRB_NEIME
INNER-MEMBRANE
NEISSERIA MENINGITIDIS
152-193



PROTEIN CTRB


PCTX_PSEAE
CYTOTOXIN PRECURSOR
PSEUDOMONAS AERUGINOSA
78-115
124-151
160-194
217-251


PCVAA_ECOLI
COLICIN V SECRETION PROTEIN CVAA
ESCHERICHIA COLI
104-138
163-219


PCVAB_ECOLI
COLICIN V SECRETION PROTEIN CVAB
ESCHERICHIA COLI
151-178


PCWPM_BACBR
MIDDLE CELL WALL PROTEIN
BACILLUS BREVIS
197-224
411-438
1010-



PRECURSOR



1044


PCWPO_BACER
OUTER CELL WALL PROTEIN
BACILLUS BREVIS
178-216
560-587
947-988



PRECURSOR


PCYAA_BORPE
ADENYLATE CYCLASE PRECURSOR
BORDETELLA PERTUSSIS
48-75
632-659
962-996


PCYAA_YERIN
ADENYLATE CYCLASE
YERSINIA INTERMEDIA
343-387
593-620


PCYAB_BORPE
CYAB PROTEIN
BORDETELLA PERTUSSIS
541-568


PCYAD_BORPE
CYAD PROTEIN
BORDETELLA PERTUSSIS
178-212


PCYAE_BORPE
CYAE PROTEIN
BORDETELLA PERTUSSIS
313-340


PCYB_RHOCA
CYTOCHROME B
RHODOBACTER CAPSULATUS
38-65


PCYDD_ECOLI
TRANSPORT PROTEIN CYDO
ESCHERICHIA COLI
3-30
382-409


PCYP_NOSSP
APOCYTOCHROME P PRECURSOR
NOSTOC SP
209-243


PCYMO_ACISP
CYCLOHEXANONE MONOOXYGENASE
ACINETOBACTER SP
439-473


PCYNT_SYNP7
CARBONIC ANHYDRASE
SYNECHOCOCCUS SP
170-200


PCYNX_ECOLI
CYNX PROTEIN
ESCHERICHA COLI
53-80


PCYOB_ECOLI
CYTOCHROME O UBIQUINOL
ESCHERICHIA COLI
31-58



OXIDASE SUBUNIT 1


PCYPH_SYNP7
PEPTIDYL-PROLYL CIS-TRANS
SYNECHOCOCCUS SP
107-141



ISOMERASE


PCYSA_ECOLI
SULFATE PERMASE A PROTEIN
ESCHERICHIA COLI
164-191


PCYSB_ECOLI
CYS REGULON TRANSCRIPTIONAL
ESCHERICHIA COLI
3-30



ACTIVATOR


PCYSB_SALTY
CYS REGULON TRANSCRIPTIONAL
SALMONELLA TYPHIMURIUM
3-30



ACTIVATOR


PCYSE_ECOLI
SERINE ACETYL TRANSFERASE
ESCHERICHIA COLI
164-191


PCYSE_SALTY
SERENE ACETYLTRANSFERASE
SALMONELLA TYPHIMURIUM
164-191


PCYSG_ECOLI
SIROHEM SYNTHASE
ESCHERICHIA COLI
405-432


PCYSG_SALTY
SIROHEM SYNTHASE
SALMONELLA TYPHINIURIUM
405-432


PCYSN_ECOLI
SULFATE ADENYLATE TRANSPERASE
ESCHERICHIA COLI
64-91



SUBUNIT I


PCYSW_ECOLI
SULFATE PERMEASE W PROTEIN
ESCHERICHIA COLI
201-228


PCYSW_SYNP7
SULFATE PEAMEASE W PROTEIN
SYNECHOCOCCUS SP
211-238


PCZCB_ALCEU
CATION EFFLUX SYSTEM PROTEIN CZCB
ALCALIGENES EUTROPHUS
241-268
283-320
364-391


PCZCB_ALCEU
CATION EFFLUX SYSTEM PROTEIN CZCD
ALCALIGENES EUTROPI4US
139-169


PDACD_BACSU
PENICILLIN-BINDING PROTEIN
BACILLUS SUBTILIS
80-107



5* PRECURSOR


PDADA_ECOLI
D-AMINO ACID DEHYDROGENASE
ESCHERICHIA COLI
127-154


PDAGA_ALTHA
NA(+)-LINKED D-ALANINE GLYCINE
ALTEROMONAS HALOPLANKTIS
332-373



PERMEASE


PDAMX_ECOLI
DAMX PROTEIN
ESCHEIUCHIA COLI
68-95
349-380


PDAPA_ECOLI
DIHYDRODIPICOLINATE SYNTHASE
ESCHERICHIA COLI
27-54
157-184


PDATI_BACSU
DNA-PROTEIN-CYSTEINE
BACILLUS SUBTILIS
13-47



METHYLTRANSFERASE


PDBHA_ECOLI
DNA-BINDING PROTEIN HU-ALPHA
ESCHERICHIA COLI
12-39


PDBH_CLOPA
DNA-BINDING PROTEIN HU
CLOSTRODIUM PASTEURIANUM
12-53


PDCAM_ECOLI
DECARBOXYLASE PROENZYME
ESCHERICHIA COLI
146-173


PDCDA_CORGL
DIAMINOPIMELATE DECARBOXYLASE
CORYNEBACTERIUM GLUTMICUM
134-161


PDCDA_PSEAE
DIAMINOPIMELATE DECARBOXYLASE
PSEUDOMONAS AERUGINOSA
57-84


PDCEB_ECOLI
GLUTAMATE DECARBOXYLASE BETA
ESCHERICHIA COLI
4-31


PDCHS_ENTAE
HISTIDINE DECARBOXYLASE
ENTEROBACTER AEROGENES
111-138


P0045_KLEPL
HISTIDINE DECARBOXYLASE
KLEBSIELLA PLANTICOLA
111-138


P0045_MORMO
HISTIDINE DECARBOXYLASE
MORGANELA MORGANII
111-138


PDCID_BACSU
DIPEPTIDE TRANSPORT PROTEIN
BACILLUS SUBTILIS
188-222


PDCLY_HAFAL
LYSINE DECCARBOXYLASE
HAFNIA ALVEI
305-332


PDCOA_KLEPN
OXALOACETATE DECARBOXYLASE
KLEBSIELLA PNEUMONIAE
261-288
342-369



ALPHA CHAIN


PDCOA_SALTY
OXALOACETATE DECARBOXYLASE
SALMONELLA TYPHIMURIUM
261-288
342-369



ALPHA CHAIN


PDCOB_SALTY
OXALOACETATE DECARBOXYLASE
SALMONELLA TYPHIMURIUM
299-326



BETA CHAIN


PDCTB_RHILE
TRANSPORT SENSOR PROTEIN DCTB
RHIZOBIUM LEGUMINOSARUM
377-411


POCTB_RHIME
TRANSPORT SENSOR PROTEIN DCTB
RHIZOBIUM MELILOTI
511-338


PDEAD_ECOLI
ATP-DEPENDENT RNA HELICASE DEAD
ESCHRIPCHIA COLI
268-295
518-545


PDEAD_KLEPN
ATP-DEPENDENT RNA HELICASE DEAD
KLEBSIELLA PNEUMONIAE
267-294
519-546


PDEDA_ECOLI
DEDA PROTEIN
ESCHERICHIA COLI
106-133


POEGS_BACSU
SENSOR PROTEIN DEGS
BACILLUS SUBTILIS
31-70
75-159
292-327


PDE8I_MORSP
HALOACETATE DEHALOGENASE H-2
MORAXELLA SP
114-141


PDEOC_ECOLI
DEOXYRIBOSE-PHOSPHATE ALDOLASE
ESCHERICHIA COLI
134-161


PDHAL_PSEOL
ALDEHYDE DEHYDROGENASE
PSEUDOMONAS OLEOVORANS
6-33


PDHAS_BACSU
ASPARTATE-SEMIALDEHYDE
BACILLUS SUBTILIS
150-184



DEHYDROGENASE


PHDAS_CORGL
ASPARTATE-SEMIALDEHYDE
CORYNEBACTERIUM GLUTMICUM
42-70
312-339



DEHYDROGENASE


PDHAS_ECOLI
ASPARTATE-SEMIALDEHYDE
ESCHERICHIA COLI
229-256



DEHYDROGENASE


PDHAS_VIBCH
ASPARTATE-SEMIALDEHYDE
VIBRIO CHOLERAE
309-336



DEHYDROGENASE


PDHA_BACSH
ALANINE DEHYDROGENASE
BACILLUS SPHAERICUS
149-176


PDHA_BACST
ALANINE DEHYDROGENASE
BACILLUS STEAROTHERMOPHILUS
94-121


PDHE2_CLODI
NAD-SPECIFIC GLUTAMATE
CLOSTRIDIUM DIFFICILE
116-143



DEHYDROGENASE


PDHE2_PEPAS
D-SPECIFIC GLUTAMATE
PEPTOSTREPTOCOCCUS
247-274
345-380



DEHYDROGENASE
ASACCHAROLYTICUS


PDHE3_SULSO
GLUTAMATE DEHYDROGENASE
SULFOLOBUS SOLFATARICUS
2-36


PDHE4_CORGL
NADP-SPECIFIC GLUTAMATE
CORYNEBACTERIUM GLUTMICUM
188-215
229-256



DEHYDROGENASE


PDHGA_ACICA
GLUCOSE DEHYDROGENASE-A
ACINETOBACTER CALCOACETICUS
10-59
190-217


PDHGB_BACME
GLUCOSE I-DEHYDROGENASE B
BACILLUS MEGATERIUM
27-57


PDHG_ECOLI
GLUCOSE DEHYDROGENASE
ESCHERICHIA COLI
436-463


PDHK1_STRVN
KETOACYL REDUCTASE 1
STREPTOMYCES VIOLACEORUBER
168-195


PDHLE_BACST
LEUCINE DEHYDROGENASE
BACILLUS STEAROTHERMOPHILUS
192-219


PDHLO_AGRT4
D-LYSOPINE DEHYDROGENASE
AGROBACTERIUM TUMEFACIENS
317-344


PDHM1_METEX
METHANOL DEHYDROGENASE
METHYLOBACTERIUM EXTORQUENS
153-187
190-224



SUBUNIT 1 PREC


PDHM1_METOR
METHANOL DEHYDROGENASE
METHYLOBACTERIUMORGANOPHILUM
153-187
190-224



SUBUNIT 1 PREC


PDHM1_PARDE
METHANOL DEHYDROGENASE
PARACOCCUS DENITRIFICANS
195-222



SUBUNIT 1 PREC


PDHNA_BACSP
NADH DEHYDROGENASE
BACILLUS SP
284-314


PDHNA_ECOLI
NADH DEHYDROGENASE
ESCHERICHIA COLI
180-214


PDHOM_BACSU
HOMOSERINE DEHYDROGENASE
BACILLUS SUBTILIS
73-107
406-433


PDHOM_CORGL
HOMOSERINE DEHYDROGENASE
CORYNEBACTERIUM GLUTMICUM
105-132


PDHPH_BACSH
PHENYLALANINE DEHYDROGENASE
BACILLUS SPHAERICUS
212-239


PDHSA_ECOLI
SUCC DEHYDROGENASE
ESCHERICHIA COLI
482-512



FLAVOPROTEIN SUBUNIT


PDHSS_ANACY
SOLUBLE HYDROGENASE 42 KD
ANABAENA CYLINDRICA
86-113
130-168



SUBUNIT


PDHSS_SYNP1
SOLUBLE HYDROGENASE, SMALL
SYNECHOCOCCUS SP
133-160



SUBUNIT


PDHTM_METME
TRIMETHYLAMINE DEHYDROGENASE
METHYLOTROPHUS METHYLOPHILUS
439-466


PDING_ECOLI
PROBABLE ATP-DEPENDENT HELICASE
ESCHERICHIA COLI
584-611



DING


PDIVB_BACSU
DIVISION INITIATION PROTEIN
BACILLUS SUBTILIS
54-82
114-141


PDLD3_PSEPU
DIHYDROLIPOAMIDE DEHYDROGENASE
PSEUDOMONAS PUTIDA
93-120


PDLDH_AZOVI
LIPOAMIDE DEHYDROGENASE
AZOTOBACTER VINELANDII
18-45
224-276



COMP (EJ)


PDLDH_BACST
LIPOAMIDE DEHYDROGENASE
BACILLUS STEAROTHERMOPHILUS
82-124



COMP (EJ)


PDLDH_BACSU
LIPOAMIDE DEHYDROGENASE
BACILLUS SUBTILIS
82-109



COMP (EJ)


PDLDH_ECOLI
DIHYDROLIPOAMIDE DEHYDROGENASE
ESCHERICHIA COLI
108-135


PDLDH_PSEFL
DIHYDROLIPOAMIDE DEHYDROGENASE
PSEUDOMONAS FLUORESCENS
124-151
223-275


PDMPN_PSEPU
PHENOL HYDROXYLASE P3
PSEUDOMONAS PUTIDA
63-90



PROTEIN


PDNA1_BACSU
DNAK PROTEIN
BACILLUS SUBTILIS
497-524
548-581


PDNA2_BACSU
DNAK PROTEIN
BACILLUS SUBTILIS
456-483


PDNAA_BACSU
DNAA PROTEIN
BACILLUS SUBTILIS
316-380


PDNAA_BORBU
DNAA PROTEIN
BORRELIA BURGDORFERI
182-216
248-275
341-387
436-463


PDNAA_BUCAP
DNAA PROTEIN
ESCHERICHIA COLI
366-400


PDNAA_MICLU
DNAA PROTEIN
MICROCOCCUS LUTEUS
385-415


PDNAA_MYCCA
DNAA PROTEIN
MYCOPLASMA CAPRICOLUM
8-56
75-112
274-310
350-389


PDNAA_PROMI
DNAA PROTEIN
PROTEUS MIRABILIS
365-399


PDNAA_PSEPU
DNAA PROTEIN
PSEUDOMONAS PUTIDA
398-439


PDNAA_SPICI
DNAA PROTEIN
SPIROPLASMA CITRI
45-72
76-110
145-180


PDNAB_CHLTR
DNAB-LIKE PROTEIN
CHLAMYDIA TRACHOMATIS
312-353


PDNAB_ECOLI
DNAB PROTEIN
ESCHERICHIA COLI
82-109


PDNAB_SALTY
DNAB PROTEIN
SALMONELLA TYPHIMURIUM
82-109


PDNAC_ECOLI
DNAC PROTEIN
ESCHERICHIA COLI
146-190


PDNAK_BACME
DNAK PROTEIN
BACILLUS MEGATERIUM
497-524
548-581


PDNAK_BORBU
DNAK PROTEIN
BORRELIA BURGDORFERI
512-594


PDNAK_BRUOV
DNAK PROTEIN
BRUCELLA OVIS
248-275
512-546


PDNAK_CAUCR
DNAK PROTEIN
CAULOBACTER CRESCENTUS
561-588


PDNAK_CLOAB
DNAK PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
499-526


PDNAK_CLOPE
DNAK PROTEIN
CLOSTRIDIUM PERFRINGENS
496-527


PDNAK_METMA
DNAK PROTEIN
METHANOSARCINA MAZEI
523-550


PDNAK_MYCTU
DNAK PROTEIN
MYCOBACTERIUM TUBERCULOSIS
502-529


PDNAK_STRCO
DNAK PROTEIN
STREPTOMYCES COELICOLOR
45-72
533-572


PDNIR_ECOLI
REGULATORY PROTEIN DNIR
ESCHERICHIA COLI
114-141


PDNLI_ZYMMO
DNA LIGASE
ZYMOMONAS MOBILIS
658-712


PDNRJ_STRPE
TRANSDUCTION PROTEIN DNRJ
STREPTOMYCES PEUCETIUS
24-51


PDOCK_SULSO
PROBABLE SIGNAL RECOGNITION
SULFOLOBUS SOLFATARICUS
104-172



PARTICLE PROTE


PDP3A_BACSU
DNA POLYMERASE III, ALPHA CHAIN
BACILLUS SUBTILIS
58-85
417-444
1382-







1416


PDP3A_ECOLI
DNA POLYMEEASE III, ALPHA CHAIN
ESCHERICHIA COLI
77-104


PDPIA_SACER
DNA POLYMERASE III, ALPHA CHAIN
SACCHAROPOLYSPORA ERYTHRAEA
230-257


PDP3A_SALTY
DNA POLYMERASE III, ALPHA CHAIN
SALMONELLA TYPHIMURIUM
77-104


PDP3B_BACSU
DNA POLYMERASE III, BETA CHAIN
BACILLUS SUBTILIS
212-239


PDP3B_BORBU
DNA POLYMERASE III, BETA CHAIN
BORRELIA BURGDORFERI
266-313


PDP3B_BUCAP
DNA POLYMERASE III, BETA CHAIN
BUCHNERA APHIDICOLA
31-62
308-359


PDP3B_MICLU
DNA POLYMERASE III, BETA CHAIN
MICROCOCCUS LUTEUS
191-218


PDP3B_MYCCA
DNA POLYMERASE III, BETA CHAIN
MYCOPLASMA CAPRICOLUM
36-70


PDP3B_PSEPU
DNA POLYMERASE III, BETA CHAIN
PSEUDOMONAS PUTIDA
30-60


PDP3B_SPICI
DNA POLYMERASE III, BETA CHAIN
SPIROPLASMA CITRI
78-112
129-177
273-310


PDP3X_BACSU
DNA POLYMERASE III SUBUNITS
BACILLUS SUBTILIS
231-272



GAMMA AND TAU


PDPC2_ECOLI
DNA PRIMASE TRAC-2
ESCHERICHIA COLI
691-743


PDPC4_ECOLI
DNA PRIMASE TEAC-4
ESCHEPJCHIA COLI
401-448


PDPND_STRPN
DPND PROTEIN
STREPTOCOCCUS PNEUMONIAE
79-120


PDPOI_BACCA
DNA POLYMERASE I
BACILLUS CALDOTENAX
208-235


POPOI_STRPN
DNA POLYMERASE I
STREPTOCOCCUS PNEUMONIAE
198-225
398-425
571-598
645-672


PDPOI_THEAQ
DNA POLYMERASE
THERMUS AQUATICUS
196-223
602-629


PDPOI_THEFL
DNA POLYMERASE
THERMUS AQUATICUS
597-628


PDPO2_ECOLI
DNA POLYMERASE II
ESCNERICHIA COLI
569-596


PDPOL_PYRFU
DNA POLYMERASE
PYROCOCCUS FURIOSUS
746-773


PDPOL_SULSO
DNA POLYMERASE
SULFOLOBUS SOLFATARICUS
379-406
436-463
625-659
747-774


PDPOL_THELI
DNA POLYMERASE
THERMOCOCCUS LITORALIS
332-370
551-589
892-926
1004-
1153-








1031
1194


PDPP_LACLA
DIPEPTIDYL PEPTIDASE IV
LACTOCOCCUS LACTIS
716-753


PDPP_LACLC
DIPEPTIDYL PEPTIDASE IV
LACTOCOCCUS LACTIS
716-753


PDPS_ECOLI
DNA PROTECTION DURING
ESCHERICHIA COLI
4-45



STARVATION PROTEIN


PDRNI_STREQ
DEOXYRIBONUCLEASE PRECURSOR
STREPTOCOCCUS EQUISIMILIS
33-60
291-318


PDRRA_STRPE
DAUNORUBICIN RESISTANCE
STREPTOMYCES PEUCETIUS
286-313



ATP-BINDING PROTEI


PDYRA_STAAU
DIHYDROFOLATE REDUCTASE TYPE I
STAPHYLOCOCCUS AUREUS
62-89


PEI3B_BACCI
GLUCAN ENDO-I,3-BETA-
BACILLUS CIRCULANS
134-161
305-339
424-451



GLUCOSIDASE A1 PREC


PEAE_ECOLI
ATTACHING AND EFFACING PROTEIN
ESCHERICHIA COLI
66-100
158-185
525-552
691-725
802-836
871-905


PEBGR_ECOLI
EBG OPERON REPRESSOR PROTEIN
ESCHERICHIA COLI
151-178


PEBR_STAAU
ETHIDIUM BROMIDE RESISTANCE PROTEIN
STAPHYLOCOCCUS AUREUS
68-98


PECHH_RHOCA
ENOYL-COA HYDRATASE HOMOLOG
RHODOBACTER CAPSULATUS
222-249


PECPD_ECOLI
CHAPERONE PROTEIN ECPD PRECURSOR
ESCHERICHIA COLI
20-47


PEOD_ZYMMO
PHOSPHOGLUCONATE DEHYDRATASE
ZYMOMONAS MOBILIS
12-39


PEDIN_STAAU
EPIDERMAL CELL DIF INN PRECURSOR
STAPHYLOCOCCUS AUREUS
52-79
119-146


PEF2_DESMO
ELONGATION FACTOR 2
DESULFUROCOCCUS MOBILIS
427-461


PEF2_HALHA
ELONGATION FACTOR 2
HALOBACTERIUM HALOBIUM
186-213


PEF2_METVA
ELONGATION FACTOR 2
METHANOCOCCUS VANNIELII
409-436


PEF2_SULAC
ELONGATION FACTOR 2
SULFOLOBUS ACIDOCALDARIUS
36-63
145-180


PEF2_THEAC
ELONGATION FACTOR 2
THERMOPLASMA ACIDOPHILUM
13-40
49-76
220-247


PEFG_ANANI
ELONGATION FACTOR G
ANACYSTIS NIDULANS
332-359


PEFG_ECOLI
ELONGATION FACTOR G
ESCHERICHIA COLI
234-261


PEFG_MYCLE
ELONGATION FACTOR G
MYCOBACTERIUM LEPRAE
211-259
330-357


PEFG_SALTY
ELONGATION FACTOR G
SALMONELLA TYPHIMURIUM
234-261


PEFG_SPIPL
ELONGATION FACTOR G
SPIRULINA PLATENSIS
334-374
481-511


PEFG_SYNY3
ELONGATION FACTOR G
SYNECHOCYSTIS SP
14-41


PEFT1_STRRA
ELONGATION FACTOR TU1
STREPTOMYCES RAMOCISSIMUS
221-258


PEFT2_STRRA
ELONGATION FACTOR TU2
STREPTOMYCES RAMOCISSIMUS
221-258


PEFT3_STRRA
ELONGATION FACTOR TU3
STREPTOMYCES RAMOCISSIMUS
221-255


PEFTS_ECOLI
ELONGATION FACTOR EF-TS
ESCHEIUCHIA COLI
101-135


PEFTS_SPICI
ELONGATION FACTOR EF-TS
SPIROPLASMA CITRI
27-54
134-161


PEFTU_BACFR
ELONGATION FACTOR TU
BACTEROIDES FRAGILIS
18-45
229-256


PEFTU_BACSU
ELONGATION FACTOR TU
BACILLUS SUBTILIS
11-45
230-257


PEFTU_BURCE
ELONGATION FACTOR TU
BUREHOLDEPIA CEPACIA
26-53


PEFTU_CNLTR
ELONGATION FACTOR TU
CHALMYDIA TRACHOMATIS
218-245


PEFTU_DEISP
ELONGATION FACTOR TU
DEINONEMA SP
230-257


PEFTU_FLESI
ELONGATION FACTOR TU
FLEXISTIPES SINUSARABICI
221-248


PEFTU_HALMA
ELONGATION FACTOR TU
HALOARCULA MARISMORTUI
4-31


PEFTU_MICLU
ELONGATION FACTOR TU
MICROCOCCUS LUTEUS
221-248


PEFTU_MYCHO
ELONGATION FACTOR TU
MYCOPLASMA HOMINIS
222-249


PEFTU_MYCLE
ELONGATION FACTOR TU
MYCOBACTERIUM LEPRAE
220-257


PEFTU_MYCTU
ELONGATION FACTOR TU
MYCOBACTERIUM TUBERCULOSIS
220-247


PEFTU_SHEPU
ELONGATION FACTOR TU
SHEWANELLA PUTREFACIENS
26-53


PEFTU_STROR
ELONGATION FACTOR TU
STREPTOCOCCUS ORALIS
232-259


PELAS_PSEAE
PSEUDOLYSIN PRECURSOR
PSEUDOMONAS AERUGINOSA
141-168


PETLI_ECOLI
T-LABILE ENTEROTOXIN A CHAIN
ESCHERICHIA COLI
78-105



PRECURSOR


PELT3_ECOLI
T-LABILE ENTEROTOXIN A CHAIN
ESCHERICHIA COLI
79-106



PRECURSOR


PELTB_CLOPE
T-LABILE ENTEROTOXIN B CHAIN
CLOSTRIDIUM PERFRINGENS
228-269



PRECURSOR


PEFTD_ECOLI
ENTEROBACTIN SYNTHETASE
ESCHERICHIA COLI
154-188



COMPONENT D


PENVM_SALTY
ENVM PROTEIN
SALMONELLA TYPHIMURIUM
34-61


PEPIB_STAEP
117 KD MEMBRANE ASSOCIATED PROTEIN
STAPHYLOCOCCUS EPIDERMIDIS
51-80
125-229
290-325
387-421
857-889


PEPIC_STAEP
EPIDERMIN BIOSYNTHESIS PROTEIN EPIC
STAPHYLOCOCCUS EPIDERMIDIS
411-447


PEPIP_STAEP
SERINE PROTEASE EPIP PRECURSOR
STAPHYLOCOCCUS EPIDERMIDIS
7-58
297-324


PEPIY_STAEP
HYPOTHETICAL 16.7 KD PROTEIN IN
STAPHYLOCOCCUS EPIDERMIDIS
70-101



EPIA 5′REGION


PEPIZ_STAEP
HYPOTHETICAL PROTEIN IN EPIA 5′REGION
STAPHYLOCOCCUS EPIDERMIDIS
42-100


PERA_ECOLI
GTP-BINDING ERA PROTEIN
ESCHERICHIA COLI
18-45


PERBS_SACER
SENSORY TRANSDUCTION
SACCIIAROPOLYSPORA ERYTHRAEA
209-243



PROTEIN ERYCI


PEREA_ECOLI
ERYTHRONMYCIN ESTERASE TYPE I
ESCHERICHIA COLI
37-64
143-170


PERY3_SACER
ERYTHRONOLIDE SYNTHASE,
SACCHAROPOLYSPORA ERYTHRAEA
9-36
967-994
1117-



MODULES 5 AND 6



1144


PESTA_STRSC
ESTERASE PRECURSOR
STREPTOMYCES SCABIES
128-155


PESTE_PSEFL
ARYLESTERASE
PSEUDOMONAS FLUORESCENS
162-189


PETCI_STAAU
ENTEROTO7UN TYPE C-1 PRECURSOR
STAPHYLOCOCCUS AUREUS
76-117
155-206


PETC2_STAAU
ENTEROTOXIN TYPE C-2 PRECURSOR
STAPHYLOCOCCUS AUREUS
76-117
155-206


PETC3_STAAU
ENTEROTOXIN TYPE C-3 PRECURSOR
STAPHYLOCOCCUS AUREUS
76-117
135-206


PETXA_STAAU
ENTEROTOXIN TYPE A PRECURSOR
STAPHYLOCOCCUS AUREUS
26-69
165-192


PETXD_CLOPE
EPSILON-TOXIN, TYPE B PRECURSOR
CLOSTRIDIUM PERIRINGENS
209-236


PETXB_STAAU
ENTEROTOXIN TYPE B PRECURSOR
STAPHYLOCOCCUS AUREUS
64-101
173-207


PETXD_STAAU
ENTEROTOXIN TYPE D PRECURSOR
STAPHYLOCOCCUS AUREUS
153-200


PETXE_STAAU
ENTEROTOXIN TYPE E PRECURSOR
STAPHYLOCOCCUS AUREUS
26-69
88-115


PEtTT_SALTY
ETHANOLAMINE AMMONIA-LYASE
SALMONELLA TYPHIMURIUM
116-150



LIGHT CHAIN


PEVGA_ECOLI
PUTATIVE TRANSCRIPTION REG
ESCHERICHIA COLI
62-89


PEVGS_ECOLI
PUTATIVE SENSOR PROTEIN EVGS
ESCHERICHIA COLI
45-79
249-276
431-458
526-553
829-856


PEXSB_ECOLI
EXODEOXYRIBONUCLEASE V
ESCHERICHIA COLI
226-253


PEXEB_ECOLI
BIOPOLYMPA TRANSPORT EXBB PROTEIN
ESCHERICHIA COLI
80-107


PEXOA_RHIME
SUCCINOGLYCAN BIOSYNTHESIS
RHIZOBIUM MELILOTI
180-207



PROTEIN EXOA


PEXOA_STRPN
EXODEOXYRIBONUCLEASE
STREPTOCOCCUS PNEUMONIAE
218-254


PEXOF_RHIME
EXOF PROTEIN
RHIZOBIUM MELILOTI
236-270
327-361


PEXOH_RHIME
SUCCINOGLYCAN BIOSYNTHESIS
RHIZOBIUM MELILOTI
252-279



PROTEIN EXOH


PEXOP_RHIME
SUCCINOGLYCAN BIOSYNTHESIS
RHIZOBIUM MELILOTI
211-242
272-299
350-391



PROTEIN EXOP


PFADB_ECOLI
FATTY OXIDATION COMPLEX
ESCHERICHIA COLI
36-63
177-204



ALPHA SUBUNIT


PFADL_ECOLI
FATTY ACID TRANSPORT
ESCHERCICHIA COLI
220-247



PROTEIN PRECURSOR


PFAED_ECOLI
OUTER MEMBRANE PROTEIN
ESCHERICHIA COLI
223-257
421-453
507-541



FAED PRECURSOR


PFAEF_ECOLI
K88 MINOR FIMBRIAL
ESCHERICHIA COLI
18-48



SUBUNIT PRECURSOR


PFAND_ECOLI
FAND PROTEIN PRECURSOR
ESCHERICHIA COLI
160-194
386-423
596-623
730-757


PFANE_ECOLI
CHAPERONE PROTEIN FANE PRECURSOR
ESCHERICHIA COLI
22-58


PFANG_ECOLI
FANG PROTEIN PRECURSOR
ESCHERICHIA COLI
104-131


PFANH_ECOLI
FANH PROTEIN PRECURSOR
ESCHERICHIA COLI
83-141


PFAOB_PSEFR
FATTY OXIDATION COMPLEX
PSEUDOMONAS FRAGI
8-42
295-322



ALPHA SUBUNIT


PFDHD_WOLSU
FDHD PROTEIN
WOLINELLA SUCCINOGENES
64-98


PFDHF_ECOLI
FORMATE DEHYDROGENASE
ESCHERICHIA COLI
613-640


PFDH_PSESR
FORMATE DEHYDROGENASE
PSEUDOMONAS SP
49-76
366-393


PFDNG_ECOLI
FORMATE DEHYDROGENASE
ESCHERICHIA COLI
288-315
323-350
696-730


PFECA_ECOLI
TRANSPORT PROTEIN FECA
ESCHERICHIA COLI
531-561



PRECURSOR


PFECC_ECOLI
TRANSPORT PROTEIN I,
ESCHERICHIA COLI
210-237



CYTOSOLIC


PFECI_ECOLI
FECI PROTEIN
ESCHERICHIA COLI
131-158


PFEMB_STAAU
POSSIBLE PROTEIN FEMB
STAPHYLOCOCCUS AUREUS
22-56


PFERN_SYNP2
FERREDOXIN-NADP REDUCTASE
SYNECHOCOCCUS SP
4-31


PFEPC_ECOLI
FERRIC ENTEROBACTIN TRANSPORT
ESCHERICHIA COLI
176-203



PROTEIN FEPC


PFEPE_ECOLI
FERRIC ENTEROBACTIN TRANSPORT
ESCHERICHIA COLI
182-234
281-308



PROTEIN FEPG


PFEPG_ECOLI
FERRIC ENTEROBACTIN TRANSPORT
ESCHERICHIA COLI
128-155



PROTEIN FEPG


PFERH_ANASP
FERREDOXIN, HETEROCYST
ANABAENA SP
2-29


PFERX_ANASP
FERREDOXIN-LIKE PROTEIN IN
ANABAENA SP
67-94



NIF REGION


PFHAB_BORPE
FILAMENTOUS HEMAGGLUTININ
BORDETELLA PERTUSSIS
1128-
1159-
2063-
2841-
3051-
3167-





1158
1386
2114
2868
3051
3194


PFHAC_BORPE
HAEMOLYSIN-LIKE PROTEIN FHAC
BORDETELLA PERTUSSIS
342-369



PRECURSOR


PFHLA_ECOLI
FORMATE HYOROCENLYASE
ESCHERICHIA COLI
36-63
350-384
401-428



TRANSACTIVATOR


PFHUA_ECOLI
FERRICHROME-IRON
ESCHERICHIA COLI
458-485



RECEPTOR PRECURSOR


PFHUB_ECOLI
PROTEIN FMUB PRECURSOR
ESCHERICHIA COLI
227-254


PFHUE_ECOLI
OUTER-MEMBRANE RECEPTOR
ESCHERICHIA COLI
587-614


PFIB_SPICI
FIBRIL PROTEIN
SPIROPLASMA CITRI
161-195
326-367


PFIC_ECOLI
CELL FILAMENTATION PROTEIN FIC
ESCHERICHIA COLI
151-178


PFIC_SALTY
CELL FILAMENTATION PROTEIN FIC
SALMONELLA TYPHIMURIUM
151-178


PFIMC_BORPE
OUTER MEMBRANE PROTEIN PRECURSOR
BORDETELLA PERTUSSIS
208-235
540-567
618-645


PFIMC_ECOLI
CHAPERONE PROTEIN PRECURSOR
ESCHERICHIA COLI
51-78


PFIMD_ECOLI
FIMD PROTEIN PRECURSOR
ESCHERICHIA COLI
222-253
458-485
534-561
563-590


PFIME_ECOLI
TYPE I FIMBRIAE REGULATORY
ESCHERICHIA COLI
165-192



PROTEIN FIME


PFIMY_SALTY
FIMBRIAE Y PROTEIN
SALMONELLA TYPHIMURIUM
49-76


PFIMZ_ECOLI
FIMBRIAE Z PROTEIN
ESCHERICHIA COLI
42-69
162-192
196-230


PFIMZ_SALTY
FIMBRIAE Z PROTEIN
SALMONELLA TYPHIMURIUM
175-209


PFINQ_ECOLI
FINQ PROTEIN
ESCHERICHIA COLI
145-172


PFIRA_RICRI
FIRA PROTEIN
RICKETTSIA RICKETTSII
162-189


PFIXC_AZOCA
FIXC PROTEIN
AZORHIZOBIUM CAULINODANS
129-156


PFIXL_AZOCA
SENSOR PROTEIN FIXL
AZORHIZOBIUM CAULINODANS
247-274


PFIXL_BRAJA
SENSOR PROTEIN FIXL
BRADYRHIZOBIUM JAPONICUM
27-54
253-280


PFLAI_BORBU
FLAGELLAR FILAMENT 41 KD CORE
BORRELIA BURODORFERI
8-35
271-298



PROTEIN


PFLAI_HALHA
FLAGELLIN A1 PRECURSOR
HALOBACTEPIUM HALOBIUM
63-92 157-184


PFLAI_METVO
FLAGELLIN B1 PRECURSOR
METHANOCOCCUS VOLTAE
28-73
133-160


PFLA2_METVO
FLAGELLIN B2 PRECURSOR
METHANOCOCCUS VOLTAE
28-66


PFLA3_HALHA
FLAGELLIN B1 PRECURSOR
HALOBACTERIUM HALOBIUM
36-63


PFLA3_METVO
FLAGELLIN B3 PRECURSOR
METHANOCOCCUS VOLTAE
35-76


PFLA4_HALHA
FLAOELLIN B2 PRECURSOR
HALOBACTERIUM HALOBIUM
36-90
157-184


PFLAS_HALHA
FLAGELLIN B3 PRECURSOR
HALOBACTERIUM HALOBIUM
36-63
154-181


PFLA6_BACSU
FLAA LOCUS 22.9 KD PROTEIN
BACILLUS SUBTILIS
73-149
155-186


PFLAA_CAMCO
FLAGELLIN A
CAMPYLOBACTER COLI
15-42
144-191
497-535


PFLAA_CAMJE
FLAGELLIN A
CAMPYLOBACTER JEJUNI
220-266
310-337
500-538


PFLAA_METVO
FLAGELLIN A PRECURSOR
METHANOCOCCUS VOLTAE
28-62


PFLAA_PSEAE
FLAGELLIN
PSEUDOMONAS AERUGINOSA
3-41
51-88
97-124


PFLAA_RHIME
FLAGELLIN
RHIZOBIUM MELILOTI
181-219
228-265
360-391


PFLAA_SPIAU
FLAGELLAR FILAMENT PROTEIN
SPIROCHAETA AURANTIA
162-189



PRECURSOR


PFLAA_TREHY
FLAGELLAR FILAMENT PROTEIN
TREPONEMA HYODYSENTERIAE
55-89
219-285



PRECURSOR


PFLAA_TREPA
FLAGELLAR FILAMENT OUTER
TREPONEMA PALLIDUM
243-270



LAYER PROTEIN


PELAB_CAMCO
FLAGELLIN B
CAMPYLOBACTER COLI
144-191
497-535


PFLAB_CAMIE
FLAGELLIN B
CAMPYLOBACTER JEJUNI
220-266
310-337
500-538


PFLAB_RHIME
FLAGELLIN
RHIZOBIUM MELILOTI
86-113
177-219
228-255
360-391


PFLAV_CLOMP
FLAVODOXIN
CLOSTRIDIUM SP
18-52


PFLAY_CAUCR
REGULATORY PROTEIN FLAY
CAULOBACTER CRESCENTUS
291-318
551-578


PFLA_BACSU
FLAGELLIN
BACILLUS SUBTILIS
102-129
228-255


PFLGG_BACSU
FLAGELLAR BASAL-BODY ROD PROTEIN
BACILLUS SUBTILIS
62-89


PFLGK_SALTY
FLAGELLAR HOOK-ASSOCIATED
SALMONELLA TYPHIMURIUM
12-50
333-360
456-540


PFLGL_ECOLI
FLAGELLAR HOOK-ASSOCIATED
ESCHERICHIA COLI
61-105
229-266


PFLGL_SALTY
FLAGELLAR HOOK-ASSOCIATED
SALMONELLA TYPHIMURIUM
61-105
229-266


PFLHD_ECOLI
FLAGELLAR TRANSCRIPTIONAL
ESCHERICHIA COLI
6-33



ACTIVATOR FLHD


PFLIA_PSEAE
FLAGELLAR OPERON RNA POL
PSEUDOMONAS AERUGINOSA
198-232



SIGMA FACTOR


PFLIC_ECOLI
FLAGELLIN
ESCHERICHIA COLI
3-41
186-213
295-329
431-466


PFLIC_SALCH
FLAGELLIN
SALMONELLA CHOLERAE-SUIS
5-41
54-125
136-198


PFLIC_SALMU
FLAGELLIN
SALMONELLA MUENCHEN
5-41
54-88
136-177
232-259
272-299
376-403


PFLIC_SALPA
FLAGELLIN
SALMONELLA PARATYPHI-A
5-41
54-125
136-184


PFLIC_SALRU
FLAGELLIN
SALMONELLA RUBISLAW
5-41
54-125
136-196


PFLIC_SALTY
FLAGELLIN
SALMONELLA TYPHIMURIUM
5-41
54-125
136-200


PFLIC_SERMA
FLAGELLIN
SERRATIA MARCESCENS

15-42
55-89
103-130
137-164
275-321


PFLID_ECOLI
FLAGELLAR HOOK-ASSOCIATED
ESCHERICHIA COLI
32-66
106-133
160-187
216-298
386-445



PROTEIN 2


PFLID_SALTY
FLAGELLAR HOOK-ASSOCIATED
SALMONELLA TYPHIMURIUM
32-66
106-133
255-299
407-438



PROTEIN 2


PFLIE_BACSU
FLAG HOOK-BASAL BODY PROTEIN
BACILLUS SUBTILIS
8-35



FLIE


PFLIF_BACSU
FLAGELLAR M-RING PROTEIN
BACILLUS SUBTILIS
327-361
391-418


PFLIF_CAUCR
FLAGELLAR M-RING PROTEIN
CAULOBACTER CRESCENTUS
24-51
297-324
361-388


PFLIF_SALTY
FLAGELLAR M-RING PROTEIN
SALMONELLA TYPHIMURIUM
484-529


PFLIG_BACSU
FLAGELLAR SWITCH PROTEIN
BACILLUS SUBTILIS
35-62


PPLIG_ECOLI
FLAGELLAR SWITCH PROTEIN
ESCHERICHIA COLI
44-71


PFLIH_BACSU
PROBABLE FLIH PROTEIN
BACILLUS SUBTILIS
19-46
105-132


PPLIJ_BACSU
PLAGELLAR FLIH PROTEIN
BACILLUS SUBTILIS
7-37


PPLIJ_SALTY
FLAGELLAR FLIJ PROTEIN
SALMONELLA TYPHIMURIUM
75-118


PFLIK_BACSU
PROBABLE FLIK PROTEIN
BACILLUS SUISPILIS
77-104
117-144


PPLIL_BACSU
FLIL PROTEIN
BACILLUS SUBTILIS
30-71
78-105
109-136


PFLIL_ECOLI
FLIL PROTEIN
ESCHERICHIA COLI
105-132


PPLIL_SALTY
FLIL PROTEIN
SALMONELLA TYPHIMURIUM
103-133


PFLIM_BACSU
FLIM PROTEIN
BACILLUS SUBTILIS
148-175


PFLIM_ECOLI
FLIM PROTEIN
ESCHERICHIA COLI
251-278


PFLIN_CAUCR
FLAGELLAR MOTOR SWITCH PROTEIN
CAULOBACTER CRESCENTUS
56-83


PFLIS_ECOLI
FLAGELLAR PROTEIN FLIS
ESCHERICHIA COLI
59-86


PELIT_SALTY
FLAGELLAR PROTEIN FLIT
SALMONELLA TYPHIMURIUM
9-46
67-106


PFMI2_PSEAE
FIMBRIAL PROTEIN PRECURSOR
PSEUDOMONAS AERUGINOSA
30-67
80-114


PFMIA_ECOLI
TYPE-I FIMBRIAL PROTEIN,
ESCHERICHIA COLI
5-32



A CHAIN PRECURSOR


PFMIC_ECOLI
TYPE-I FIMBRIAL PROTEIN,
ESCHERICHIA COLI
11-38



C CHAIN PRECURSOR


PFMI_ACTVI
FIMBRIAL SUBUNIT TYPE I PRECURSOR
ACTINOMYCES VISCOSUS
248-282
352-379
417-444


PFM98_ECOLI
FIMBRIAL PROTEIN 987P PRECURSOR
ESCHERICHIA COLI
114-141


PPMA0_BACNO
FPIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
110-137


PFMA1_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
107-134


PFMA2_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
107-134


PFMA7_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
110-137


PFMAA_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
123-150


PPMAF_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
107-141


PPMAH_BACHO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
95-122


PPMAI_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
111-145


PPMAJ_BACNO
FIMBRIAL PROTEIN PRECURSOR
BACTEROIDES NODOSUS
96-123


PFMCD_PSEAE
FIMBRIAL PROTEIN PRECURSOR
PSEUDOMONAS AERUGINOSA
70-97


PFMDD_BACNO
POSSIBLE FIMBRIAL ASSEMBLY
BACTEROIDES NODOSUS
106-144
355-382



PROTEIN FIMO


PPMDH_BACNO
POSSIBLE FIMBRIAL ASSEMBLY
BACTEROIDES NODOSUS
106-144
355-382



PROTEIN FIMO


PFMF3_ECOLI
F17 FIMBRIAL PROTEIN PRECURSOR
ESCHERICHIA COLI
97-124


PFMM1_NEIME
PIMBRIAL PROTEIN PRECURSOR
NEISSERIA MENINGITIDIS
70-97


PFMM2_NEIGO
FIMBRIAL PROTEIN PRECURSOR
NEISSERIA GONORRHOEAE
66-97


PFMM_MORNO
FIMBRIAL PROTEIN PRECURSOR
MORAXELLA NONLIQUEPACIENS
108-146


PFMPI_PSEAE
FIMBRIAL PROTEIN PRECURSOR
PSEUDOMONAS AERUGINOSA
30-67
80-114


PPMSI_PSEAE
FIMBRIAL PROTEIN PRECURSOR
PSEUDOMONAS AERUGINOSA
70-97


PPMSI_ECOLI
CS1 FIMBRIAL SUBUNIT A PRECURSOR
ESCHERICHIA COLI
60-87
112-139


PFMS3_ECOLI
CS3 FIMBRIAL SUBUNIT A PRECURSOR
ESCHERICHIA COLI
49-98


PFM_HAEIN
MAJOR FIMBRIAL SUBUNIT PRECURSOR
HAEMOPHILUS INFLUENZAE
102-129


PFNBA_STAAU
FIBRONECTIN-BINDING PROTEIN
STAPHYLOCOCCUS AUREUS
41-83
188-215
311-365
431-458
517-555
652-686
722-756



PRECURSOR


PFOLC_ECOLI
FOLYLPOLYGLUTAMATE SYNTHASE
ESCHERICHIA COLI
125-159


PPOLC_LACCA
FOLYLPOLYGLUTAMATE SYNTHASE
LACTOBACILLUS CASEI
129-156


PFPG_BACPI
PORMAMIDOPYRIMIDINE-DNA
BACILLUS FIRMUS
153-180



GLYCOSYLASE


PFRDA_ECOLI
FUMARATE REDUCTASE FLAVOPROTEIN
ESCHERICHIA COLI
395-422



SUBUNIT


PFRDA_WOLSU
FUMARATE REDUCTASE FLAVOPROTEIN
WOLINELLA SUCCINOGENES
8-35
487-514



SUBUNIT


PFRZE_MYXXA
GLIDING MOTILITY REGULATORY
MYXOCOCCUS XANTHUS
15-42
478-505



PROTEIN


PFTHS_CLOTH
FORMATE-TETRAHYDROFOLATE
CLOSTRIDIUM THERMOACETUM
163-190



LIGASE


PFTR_METTH
FORMYLTRANSFERASE
METHANOBACTERIUM
9-43




THERMOAUTOTROPHICO


PFTSA_BACSU
CELL DIVISION PROTEIN FTSA
BACILLUS SUBTILIS
76-110


PFTSA_ECOLI
CELL DIVISION PROTEIN FTSA
ESCHERICHIA COLI
301-338
375-418


PFTSJ_ECOLI
CELL DIVISION PROTEIN FTSJ
ESCHERICHIA COLI
4-31


PFTSL_ECOLI
CELL DIVISION PROTEIN FTSL
ESCHERICHIA COLI
63-90


PFTSN_ECOLI
CELL DIVISION PROTEIN FTSN
ESCHERICHIA COLI
151-188


PFTSX_ECOLI
CELL DIVISION PROTEIN FTSX
ESCHERICHIA COLI
278-305


PFTSY_ECOLI
CELL DIVISION PROTEIN PISY
ESCHERICHIA COLI
230-260


PFUCR_ECOLI
L-FUCOSE OPERON ACTIVATOR
ESCHERICHIA COLI
7-45


PFUMA_BACST
FUMARATE HYDRATASE CLASS I,
BACILLUS STEAROTHERMOPHILUS
290-317



AEROBIC


PFUMH_BACSU
FUMARATE HYDRATASE
BACILLUS SUBTILIS
414-445


PFUR_YERPE
FERRIC UPTAKE REGULATION PROTEIN
YERSINIA PESTIS
99-130


PG3PI_ECOLI
GLYC 3-PHOS DEHYDROGENASE A
ESCHERICHIA COLI
302-329


PG3P2_ANAVA
GLYC 3-PHOS DEHYDROGENASE 2
ANABAENA VARIABILIS
87-114


PG3P3_ANAVA
GLYC 3-PHOS DEHYDROGENASE 3
ANABAENA VARIABILIS
162-119


PG3P2_ECOLI
GLYC 3-PHOS DEHYDROGENASE C
ESCHERICHIA COLI
236-324


PG3P_BACME
GLYC 3-PHOS DEHYDROGENASE
BACILLUS MEGATERIUM
49-76
237-271


PG3P_BACSU
GLYC 3.PHOS DEHYDROGENASE
BACILLUS SUBTILIS
49-76


PG3P_PYRWO
GLYC 3-PHOS DEHYDROGENASE
PYROCOCCUS WOESEI
259-286


PG3P_THEMA
GLYC 3-PHOS DEHYDROGENASE
THERMOTOGA MARITIMA
290-328


PG6PB_BACST
GLUCOSE-6-PHOSPHATE
BACILLUS STEAROTHERMOPHILUS
103-143
241-268



ISOMERASE B


PG6PD_ECOLI
GLUCOSE-6-PHOSPHATE
ESCRERICHIA COLI
301-328



1-DEHYDROGENASE


PG6PD_ZYMMO
GLUCOSE-4-PHOSPHATE
ZYMOMONAS MOBILIS
165-192



I-DEHYDROGENASE


PGACA_PSEPL
CYANIDE CONTROL PROTEIN
PSEUDOMONAS FLUORESCENS
178-205


PGALI_SALTY
GALACTOKINASE
SALMONELLA TYPHIMURIUM
86-113


PGAL7_HAEIN
GAL-1-PHOS URXDTYLYLTRANSFERASE
HAEMOPHILUS INELUENZAE
124-136
239-269


POAL7_LACHE
GAL-1-PHOS URIDTYLTRANSFERASE
LACTOBACILLUS HELVETICUS
304-338


PGALF_SALTY
GALACTOSE OPERON REPRESSOR
SALMONELLA TYPHIMURIUM
53-91


PGALR_HAEIN
GALACTOSE OPERON REPRESSOR
HAEMOPHILUS INFLUENZAE
182-209


PGAL_PSEFL
DE D-GALACTOSE 1-DEHYDROGENASE
PSEUDOMONAS FLUORESCENS
251-271


PGAH2_ECOLI
GTP CYCLOHYDROLASE II
ESCHERICHIA COLI
78-105


PGCH2_PHOLE
GTP CYCLOHYDROLASE II
PHOTOBACTERIUM LEIOGNATHI
197-227
246-273


PGCsH_ECOLI
GLYCINE CLEAVAGE SYSTEM H PROTEIN
ESCHERICHIA COLI
10-37


PGCSP_ECOLI
GLYCINE DEHYDROGENASE
ESCHERICHIA COLI
216-246


PGCVA_ECOLI
GLYCINE CLEAVAGE SYSTEM TRANSACTIVATOR
ESCHERICHIA COLI
60-94


PGENK_ECOLI
PROTEIN K
ESCHERICHIA COLI
24-51


PGERI_BACSU
SPORE GERMINATION PROTEIN I
BACILLUS SUBTILIS
49-83
182-216
350-384


PGER3_BACSU
SPORE GERMINATION PROTEIN III PRECURSOR
BACILLUS SUBTILIS
293-323


PGERE_BACSU
GERMINATION PROTEIN GERE
BACILLUS SUBTILIS
13-40


PGGI2_STAHA
ANTIBACTERIAL PROTEIN 2
STAPHYLOCOCCUS HAEMOLYTICUS
6-33


PGG13_STAHA
ANTIBACTERIAL PROTEIN 3
STAPHYLOCOCCUS HAEMOLYTICUS
6-33


PGIDA_BACSU
GLUCOSE INHIBITED DIVISION PROTEIN A
BACILLUS SUBTILIS
396-423


PGIDA_ECOLI
GLUCOSE INHIBITED DIVISION PROTEIN A
ESCHERICHIA COLI
533-568


PGIDA_PSEPU
GLUCOSE INHIBITED DIVISION PROTEIN A
PSEUDOMONAS PLITIDA
539-566


PGIDB_BACSU
GLUCOSE INHIBITED DIVISION PROTEIN B
BACILLUS SUBTILIS
34-61


PGIDB_PSEPU
GLUCOSE INHIBITED DIVISION PROTEIN B
PSEUDOMONAS PUTIDA
25-52


PGLCP_SYNY3
GLUCOSE TRANSPORT PROTEIN
SYNECHOCYSTIS SP
288-322


POLDA_BACST
GLYCEROL DEHYDROGENASE
BACILLUS STEAROTHERMOPHILUS
20-79


POLGA_ECOLI
GLYCOGEN SYNTHASE
ESCHERICHIA COLI
256-283


POLOC_ECOLI
GLUCOSE-1-PHOSPHATE
ESCHERICHIA COLI
114-141



ADENYLYLTRANSFERASE


POLGC_SALTY
GLUCOSE-1-PHOSPHATE
SALMONELLA TYPHIMUPIUM
114-141



ADENYLYLTRANSFERASE


PGLMS_ECOLI
GLUCFRUC-6-PHOSAMINOTRANSFERASE
ESCHERICHIA COLI
209-243


POLNI_METTL
GLNB-LDCE PROTEIN 1
METHANOCOCCUS THERMOLITHOTROPHICUS
58-85


PGLNA_ANASP
GLUTAMINE SYNTHETASE
ANABAENA SP
8-42


PGLNA_CLOAB
GLUTAMINE SYNTHETASE
BACILLUS SUBTILIS
4-31


PGLNA_ECOLI
GLUTAMINE SYNTHETASE
ESCHERICHIA COLI
144-171


PGLNA_METVO
GLUTAMINE SYNTHETASE
METHANOCOCCUS VOLTAE
203-230


PGLNA_PROVU
GLUTAMINE SYNTHETASE
PROTEUS VULGARIS
142-169


PGLNA_PYRFU
GLUTAMINE SYNTHETASE
PYROCOCCUS FURIOSUS
391-421


PGLNA_SALTY
GLUTAMINE SYNTHETASE
SALMONELLA TYPHIMURIUM
144-171


PGLNA_STRCO
GLUTAMINE SYNTHETASE
STREPTOMYCES COELICOLOR
186-213


PGLNB_AZOBR
NITROGEN REGULATORY PROTEIN P-II
AZOSPIRILLUM BRASILENSE
15-49


PGLNB_RHOCA
NITROGEN REGULATORY PROTEIN P-II
RHODOBACTER CAPSULATUS
15-49


PGLNB_SYNP6
NITROGEN REGULATORY PROTEIN P-II
SYNECHOCOCCUS SP
52-79


PGLND_ECOLI
UDP URIDYLYLTRANSFERASE
ESCHERICHIA COLI
20-147
151-178


PGLND_SALTY
UDP URIDYLYLTRANSFERASE
SALMONELLA TYPHIMURIUM
151-178


POLNE_ECOLI
ADENYLYLTRANSFERASE
ESCHERICHIA COLI
103-130
433-460
767-790


PGLNH_ECOLI
GLUTAMINE-BINDING PROTEIN
ESCHERICHIA COLI
126-153



PRECURSOR


PGLNQ_BACST
GLUTAMINE PERMEASE OPERON
BACILLUS STEAROTHERMOPHILUS
7-34



PROTEIN GLNQ


PGLPD_BACSU
AEROBIC GLYC-3-PHOS DEHYDROGENASE
BACILLUS SUBTILIS
194-230


PGLPO_ECOLI
AEROBIC GLYC-3-PHOS DEHYDROGENASE
ESCHERICOOIA COLI
410-437


PGLPF_BACSU
GLYCEROL UPTAKE FACILITATOR
BACILLUS SUBTILIS
235-274



PROTEIN


PGLPK_BACSU
GLYCEROL KINASE
BACILLUS SUBTILIS
44-93


PGLPK_ECOLI
GLYCEROL KINASE
ESCHERICHIA COLI
56-90


PGLPR_ECOLI
GLYCEROL-3-PHOSPHATE REGULON
ESCHERICHIA COLI
5-32



REPRESSOR


PGLPX_ECOLI
GLPX PROTEIN
ESCHERICHIA COLI
297-324


PGLPX_SHIFL
GLPX PROTEIN
SHIGELLA FLEXNERI
297-324


PGLRX_ECOLI
GLUTAREDOXIN
ESCHERICHIA COLI
24-51


PGLTB_ECOLI
GLUTAMATE SYNTHASE
ESCHERICHIA COLI
482-509


PGLTP_ECOLI
PROTON GLUTAMATE SYMPORT PROTEIN
ESCHERICHIA COLI
319-346


PGLVB_ECOLI
PHOSPHOTRANSFERASE ENZYME
ESCHERICHIA COLI
130-157



TYPE-IIB


PGLYA_BRAJA
SERINE HYDROXYMETHYLTEANSFERASE
BRADYRHIZOBIUM JAPONICUM
29-60


PGLYA_CAMIE
SERINE HYDROXYMETHYLTRANSFERASE
CAMPYLOBACTER JEJUNI
376-403


PGLYA_HYPME
SERINE HYDROXYMETHYLTRANSFERASE
HYPHOMICROBIUM METHYLOVORUM
28-55


PGMG7_BACSU
COMO OPERON PROTEIN 7
BACILLUS SUBTILIS
37-67
88-122


PGNTK_BACSU
GLUCONOKINASE
BACILLUS SUBTILIS
238-271


PGPID_CHLTR
VIRULENCE PROTEIN PGP1-D
CHALMYDIA TRACHOMATIS
312-353


PGP2D_CHLTR
VIRULENCE PROTEIN PGP2-D
CHALMYDIA TRACHOMATIS
97-131


PGP5D_CHLTR
VIRULENCE PROTEIN PGP3-D
CHALMYDIA TRACHOMATIS
25-52


PGP6D_CHLTR
VIRULENCE PROTEIN PGP6-D
CHALMYDIA TRACHOMATIS
63-106
193-220


PGP7D_CHLTR
VIRULENCE PROTEIN PGP7-D
CHALMYDIA TRACHOMATIS
12-60


PGP8D_CHLTR
VIRULENCE PROTEIN PGP8-D
CHALMYDIA TRACHONIATIS
94-121


PGREA_RICPR
TRANSCRIPTION ELONGATION
RICKETTSIA PROWAZEKII
15-49



FACTOR GREA


PGRPE_BACSU
GRPE-LIKE PROTEIN
BACILLUS SUBTILIS
27-73


PGRPE_BORBU
GRPE-LIKE PROTEIN
BORRELIA BURGDORFERJ
2-79


PORPE_QOAB
GRPE-LIKE PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
12-83


PORSA_BACER
GRAMICIDIN S SYNTHETASE
BACILLUS BREVIS
543-572
799-826
840-882
1035-








1062


PGRSE_RACER
GRAMICIDIN S SYNTHETASE II
BACILLUS BREVIS
48-75
94-121
241-282
1126-
1213-
2162-
2559-
2819-
3606-








1153
1240
2189
2586
2846
3633


PGSHI_ECOLI
GLUTAMATE-CYSTEINE LIGASE
ESCHERICHIA COLI
239-266
274-301


PGSHR_ECOLI
GLUTATHIONE REDUCTASE
ESCHERICHIA COLI
100-134
270-311


PGSHR_PSEAE
GLUTATHIONE REDUCTASE
PSEUDOMONAS AERUGINOSA
80-114


PGSIA_BACSU
STARVATION-INDUCIBLE PROTEIN A
BACILLUS SUBTILIS
74-101
265-296


PGSPD_ERWCA
PROTEIN D PRECURSOR
ERWINIA CAROTOVORA
258-285
516-543
589-619


PGSPD_ERWCH
PROTEIN D PRECURSOR
ERWINIA CHRYSANTHEMI
259-302
307-338
551-578
659-686


PGSPD_KLEPN
PROTEIN D PRECURSOR
KLEBSIELLA PNEUMONIAE
259-286


PGSPE_ERWCH
PROTEIN E
ERWINIA CAROTOVORA
329-367


PGSPE_ERWCH
PROTEIN E
ERWINIA CHRYSANTHEMI
329-367


PGSPE_KLEPN
PROTEIN E
KLEBSIELLA PNEUMONIAE
323-361


PGSPE_PSEAE
PROTEIN E
PSEUDOMONAS AERUGINOSA
122-149
331-369


PGSPF_XANCP
PROTEIN F
XANTHOMONAS CAMPESTRIS
230-257


PGSPH_PSEAE
PTOTEIN H PRECURSOR
PSEUDOMONAS AERUGINOSA
18-59


PGSPI_AERHY
PROTEIN I PRECURSOR
AEROMONAS HYDROPHILA
27-61


PGSPI_ERWCA
PROTEIN I PRECURSOR
ERWINIA CAROTOVORA
35-62


PGSPJ_KLEPN
PROTEIN J PRECURSOR
KLEBSIELLA PNEUMONIAE
140-167


PGSPK_ERWCA
PROTEIN K
ERWINIA CAROTOVORA
28-55


PGSPK_ERWCH
PROTEIN K
ERWINIA CHRYSANTHENI
28-55


PGSPK_KLEPN
PROTEIN K
KLEBSIELLA PNEUMONIAE
72-99


PGSPK_PSEAE
PROTEIN K
PSEUDOMONAS AERUGINOSA
262-289


PGSPL_ERWCH
PROTEIN L
ERWINIA CHRYSANTHEMI
7-42
248-286
331-358


PGSPL_XANCP
PROTEIN L
XANTHOMONAS CAMPESTRIS
39-73
297-324


PGSPM_ERWCA
PROTEIN M
ERWINIA CAROTOVORA
108-145


PGSQD_ERWCH
PROTEIN D PRECURSOR
ERWINIA CHRYSANTHEMI
259-302
448-475
546-573
657-684


PGTF1_STRDO
GLUCOSYLTRANSFERASE-1 PRECURSOR
STREPTOCOCCUS DOWNEI
42-69
177-204
212-239
464-491
1382-
1495-









1416
1529


PGTF2_STRDO
GLUCOSYLTRANSFERASE-I PRECURSOR
STREPTOCOCCUS DOWNEI
171-198
206-233
458-485
1382-
1497-








1412
1524


PGTFA_STRMU
GLUCOSYLTRANSFERASE-S
STREPTOCOCCUS MUTANS
297-350


PGTFB_STRMU
GLUCOSYLTRANSFERASE-I PRECURSOR
STREPTOCOCCUS MUTANS
42-93
110-137
161-188
199-246
313-347
592-627


PGTFC_STRMU
GLUCOSYLTRANSFERASE-SI PRECURSOR
STREPTOCOCCUS MUTANS
4-40
110-138
235-262
330-361
614-653


PGTFS_STRDO
GLUCOSYLTRANSFERASE-S PRECURSOR
STREPTOCOCCUS DOWNEI
275-316
436-463
1281







1315


PGTMR_METTF
POSSIBLE G-T MISMATCHES REPAIR
METHANOBACTERIUM
80-107
148-175



ENZYME
THERMOFORMICICUM


PGUAA_BACSU
GMP SYNTHASE
BACILLUS SUBTILIS
314-348
399-436
478-505


PGUAA_ECOLI
GMP SYNTHASE
ESCHERICHIA COLI
105-132


PGUB_BACCI
BETA-GLUCANASE PRECURSOR
BACILLUS CIRCULANS
164-191


PGUB_BACLI
BETA-GLUCANASE PRECURSOR
BACILLUS LICHENIFORMIS
132-166


PGUB_BACMA
BETA-GLUCANASE PRECURSOR
BACILLUS MACERANS
126-160


PGUN1_BACS4
ENDOGLUCANASE A
BACILLUS SP
18-49


PGUN1_BACSU
ENDOGLUCANASE PRECURSOR
BACILLUS SUBTILIS
270-304
376-403


PGUN1_BUTFI
ENDOGLUCANASE I
BUTYRIVIBRIO FIBRISOLVENS
154-181
452-495


PGUN2_BACSU
ENDOGLUCANASE PRECURSOR
BACILLUS SUBTILIS
270-304


PGUN2_THEFU
ENDOGLUCANASE E-2 PRECURSOR
THERMOMONOSPORA FUSCA
201-228


PGUN3_BACS4
ENDOGLUCANASE C PRECURSOR
BACILLUS SP
110-137
348-378
538-565


PGUN3_BACSU
ENDOGLUCANASE PRECURSOR
BACILLUS SUBTILIS
270-304


PGUN3_FIBSU
ENDOGLUCANASE 3 PRECURSOR
FIBROBACTER SUCCINOGENES
542-586


PGUN4_THEFU
ENDOGLUCANASE E-4 PRECURSOR
THERMOMONOSPORA FUSCA
308-342


PGUN5_THEFU
ENDOGLUCANASE E-5 PRECURSOR
THERMOMONOSPORA FUSCA
44-71


PGUNA_BACLA
ENDOGLUCANASE A PRECURSOR
BACILLUS LAUTUS
410-437
454-481


PGUNA_CLOTM
ENDOGLUCANASE A PRECURSOR
CLOSTRIDIUM THERMOCELLUM
354-384


PGUNA_PSEFL
ENDOGLUCANASE A PRECURSOR
PSEUDOMONAS FLUORESCENS
762-789


PGUNA_RUMAL
ENDOGLUCANASE A
RUMINOCOCCUS ALBUS
294-321


PGUNA_RUMFL
CELLODEXTRINASE A
RUMINOCOCCUS FLAVEFACIENS
276-303


PGUNB_BACLA
ENDOGLUCANASE B PRECURSOR
BACILLUS LAUTUS
375-450


PGUNB_CALSA
ENDOGLUCANASE B
CALDOCELLUM SACCHAROLYTICUM
151-182
444-478


PGUNB_CELFI
ENDOGLUCANASE B PRECURSOR
CELLULOMONAS FIMI
266-293


PGUNB_CLOCL
ENDOGLUCANASE B PRECURSOR
CLOSTRIDIUM CELLULOVORANS
144-171
266-300


PGUNB_CLOTM
ENDOGLUCANASE B PRECURSOR
CLOSTRIDIUM THERMOCELLUM
514-541


PGUNC_CELFI
ENDOGLUCANASE C PRECURSOR
CELLULOMONAS FIMI
881-908


PGUNC_PSEFL
ENDOGLUCANASE C PRECURSOR
PSEUDOMONAS FLUORESCENS
52-82


PGUND_CLOCE
ENDOGLUCANASE D PRECURSOR
CLOSTRIDIUM CELLULOLYTICUM
382-453


PGUND_CLOCL
ENDOGLUCANASE D PRECURSOR
CLOSTRIDIUM CELLULOLYTICUM
145-172
271-298


PGUNE_CLOTM
ENDOGLUCANASE E PRECURSOR
CLOSTRIDIUM THERMOCELLUM
158-185
207-234
284-311


PGUNH_CLOTM
ENDOGLUCANASE H PRECURSOR
CLOSTRIDIUM THERMOCELLUM
46-73
425-452


PGUNS_ERWCA
ENDOGLUCANASE PRECURSOR
ERWINIA CAROTOVORA
20-47
115-149


PGUNX_CLOTM
PUTATIVE ENDOGLUCANASE X
CLOSTRIDIUM THERMOCELLUM
105-139


PGUNZ_CLOSR
ENDOGLUCANASE Z PRECURSOR
CLOSTRIDIUM STERCORARIUM
296-326
522-549


PGUN_BACPO
ENDOGLUCANASE
BACILLUS POLYMYXA
198-225


PGUN_BACS1
ENDOGLUCANASE PRECURSOR
BACILLUS SP
321-348


PGUN_BACS6
ENDOGLUCANASE PRECURSOR
BACILLUS SP
198-229
501-528
623-664


PGUTD_ECOLI
SORBITOL-6-PHOSPHATE 2-
ESCHERICHIA COLI
138-165



DEHYDROGENASE


PGPV1_HALHA
GAS VESICLE PROTEIN, PLASMID
HALOBACTERIUM HALOBIUM
36-63


PGPV2_HALHA
GAS VESICLE PROTEIN,
HALOBACTERIUM HALOBIUM
36-63



CHROMOSOMAL


PGPVA_APHFL
GAS VESICLE PROTEIN
APHANIZOMENON FLOS-AQUAE
4-31
39-66


PGPVA_FREDI
GAS VESICLE PROTEIN
FREMYELLA DIPLOSIPHON
4-31
39-66


PGPVA_HALME
GAS VESICLE PROTEIN
HALOBACTERIUM MEDITERRANEI
37-64


PGPVA_MICBC
GAS VESICLE PROTEIN
MICROCYSTIS SP
39-66


PGPVA_PSEAN
GAS VESICLE PROTEIN
PSEUDOANABAENA SP
4-31
39-66


PGPVC_APHFL
GAS VESICLE PROTEIN C
APHANIZOMENON FLOS-AQUAE
8-49


PGPVC_HALHA
GAS VESICLE PROTEIN C
HALOBACTERIUM HALOBIUM
150-249


PGVPC_HALME
GAS VESICLE PROTEIN C
HALOBACTERIUM MEDITERRANEI
139-169


PGVPD_HALHA
GVPD PROTEIN, PLASMID
HALOBACTERIUM HALOBIUM
110-147


PGVPD_HALHE
GVPD PROTEIN
HALOBACTERIUM MEDITERRANEI
110-147


PGVPF_HALMA
GVPF PROTEIN, PLASMID
HALOBACTERIUM HALOBIUM
13-47
135-169


PGVPF_HALME
GVPF PROTEIN
HALOBACTERIUM MEDITERRANEI
13-47


PGVPF_HALSA
GYPF PROTEIN
HALOBACTEPIUM SALINARIUM
8-49


PGVPG_HALMA
GVPG PROTEIN, PLASMID
HALOBACTERIUM HALOBIUM
38-65


PGVPG_HALME
GVPG PROTEIN
HALOBACTERIUM MEDITERRANEI
38-72


PGVPH_HALHA
GVPH PROTEIN
HALOBACTERIUM HALOBIUM
10-40


PGVPI_HALME
GVPI PROTEIN
HALOBACTERIUM MEDITERRANEI
5-32


PGVPK_HALHA
GVPK PROTEIN
HALOBACTERIUM HALOBIUM
45-76


PGVPK_HALME
GVPK PROTEIN
HALOBACTERIUM MEDITERRANEI
12-39
47-74


PGVPK_HALSA
GVPK PROTEIN
HALOBACTERIUM SALINARIUM
11-31
50-77


PGVPL_HALME
GVPL PROTEIN
HALOBACTERIUM MEDITERRANEI
44-78


POVPN_HALHA
GVPN PROTEIN
HALOBACTERIUM HALOBIUNI
113-140


PGVPN_HALME
GVPN PROTEIN
HALOBACTERIUM MEDITERRANEI
15-56


PGVPO_HALME
GVPO PROTEIN
HALOBACTERIUM MEDITERRANEI
69-96
105-132


PGYRA_BACSU
DNA GYRASE SUBUNIT A
BACILLUS SUBTILIS
380-407
429-499


PGYRA_CAMIE
DNA GYRASE SUBUNIT A
CAMPYLOBACTERIE JUNI
267-310
381-408
452-479
665-695


PGYRA_ECOLI
DNA GYRASE SUBUNIT A
ESCHERICHIA COLI
266-293
449-497


PGYRA_KLEPN
DNA GYRASE SUBUNIT A
KLEBSIELLA PNEUMONIAE
266-293
448-496
518-545


PGYRA_MYCPN
DNA GYRASE SUBUNIT A
MYCOPLASMA PNEUMONIAE
4-31


PGYRA_STAAU
DNA GYRASE SUBUNIT A
STAPHYLOCOCCUS AUREUS
129-156
346-373
430-479
647-674
812-839


PGYRA_BACSU
DNA GYRASE SUBUNIT B
BACILLUS SUBTILIS
198-239


PGYRB_BORBU
DNA GYRASE SUBUNIT B
BORRELIA BURODORFERI
154-181


PGYRB_ECOLI
DNA GYRASE SUBUNIT B
ESCHERICHIA COLI
616-643


PGYRB_HALSQ
DNA GYRASE SUBUNIT B
HALOFERAX SP
230-257


POYRE_MYCPN
DNA GYRASE SUBUNIT B
MYCOPLASMA PNEUMONIAE
249-283


PGYRB_NEIGO
DNA GYRASE SUBUNIT B
NEISSERIA GONORRHOEAE
524-558
618-645


PGYRB_PSEPU
DNA GYRASE SUBUNIT B
PSEUDOMONAS PUTIDA
122-149
684-711


PGYRB_SPICI
DNA GYRASE SUBUNIT B
SPIROPLASMA CITRI
40-74
189-238
283-310
341-368
540-579


PGYRB_STAAU
DNA GYRASE SUBUNIT B
STAPHYLOCOCCUS AUREUS
252-279
291-318


PHDHA_ECOLI
7-ALPHA-HYDROXYSTEROID
ESCHEPICHIA COLI
71-98



DEHYDROGENASE


PHELD_ECOLI
HELICASE IV
ESCHEPICHIA COLI
100-134
529-556


PHEL_HABIN
LIPOPROTEIN E PRECURSOR
HAEMOPHILUS INFLUENZAE
58-85


PHEMI_CHLVI
GLUTAMYL-TRNA REDUCTASE
CHLOROBIUM VIBIOFORMES
232-259


PHEMI_ECOLI
GLUTAMYL-TRNA REDUCTASE
ESCHERICHIA COLI
289-316


PHEMI_RHOSH
5-AMINOLEVULINIC ACID SYNTHASE
RHODOBACTER SPHAEROIDES
73-100


PHEMI_SALTY
GLUTAMYL-TRNA REDUCTASE
SALMONELLA TYPHIMURIUM
289-316
344-371


PHEMI_SYNY3
GLUTAMYL-TRNA REDUCTASE
SYNECHOCYSTIS SP
163-190
350-377


PHEM2_METSC
DELTA-AMINOLEVULINIC ACID
METHANOTHERMUS SOCIABILIS
131-158



DEHYDRATASE


PHEM4_BACSU
PUTATIVE URDPORPHYRINOGEN-III SYNTHASE
BACILLUS SUBTILIS
10-37


PHEM4_ECOLI
UROPORPHYRINOGEN-III SYNTHASE
ESCHERICHIA COLI
211-238


PHEMM_ECOLI
HEMM PROTEIN
ESCHEPICHIA COLI
141-174


PHEMR_YEREN
HEMIN RECEPTOR PRECURSOR
YERSINIA ENTEROCOLITICA
234-261


PHEMX_ECOLI
PUTATIVE METHYLTRANSFERASE
ESCHERICHIA COLI
69-138
185-219


PHEMY_BACSU
HEMY PROTEIN
BACILLUS SUBTILIS
217-262


PHEMZ_BACSU
FERROCHELATASE
BACILLUS SUBTILIS
199-226


PHETA_ANASP
HETEROCYST DIFFERENTIATION PROTEIN
ANABAENA SP
184-211
357-398
521-565


PHEXA_STRPN
DNA MISMATCH REPAIR PROTEIN HEXA
STREPTOCOCCUS PNEUMONIAE
426-460


PHEXB_STRPN
DNA MISMATCH REPAIR PROTEIN HEXB
STREPTOCOCCUS PHEUMONIAE
470-497


PHFAB_CAUCR
POS TRANSACTIVATOR PROTEIN
CAULOBACTER CRESCENTUS
98-125



HFAB


PHFLC_ECOLI
HFLC PROTEIN
ESCHERICHIA COLI
113-140


PHFLX_ECOLI
GTP-BINDING PROTEIN HFLX
ESCHERICHIA COLI
169-196


PHFQ_ECOLI
HOST FACTOR-I PROTEIN
ESCHERICHIA COLI
24-51


PHIFC_HAEIN
PILIATION PROTEIN HIFC PRECURSOR
HAEMOPHILUS INFLUENZAE
356-383
404-431
447-474


PHIS2_LACLA
PHOSPHORIBOSYL-AMP
LACTOCOCCUS LACTIS
126-174



CYCLOHYDROLASE


PHIS4_ECOLI
P-5-A CARBOXAMIDE RIBOTIDE
ESCHERHCHIA COLI
125-159


PHIS4_LACLA
P-5-A CARBOXAMIDE RIBOTIDE
LACTOCOCCUS LACTIS
49-89
181-228


PHIS4_METVA
P-5-A CARBOXAMIDE RIBOTIDE
METHANOCOCCUS VANNIELII
115-142


PHIS4_SALTY
P-5-A CARBOXAMIDE RIBOTIDE
SALMONELLA TYPHIMURIUM
125-159


PHISS_LACLA
AMIDOTRANSFERASE HISH
LACTOCOCCUS LACTIS
7-34


PHIS6_ECOLI
HISF PROTEIN
ESCHERICHIA COLI
39-66
142-169


PHIS6_SALTY
HISF PROTEIN
SALMONELLA TYPHIMURIUM
39-66
142-169


PHIS7_ECOLI
IMIDAZOLEOLYCEROL-
ESCHEPICHIA COLI
168-199



PHOSPHATE DEHYDRATAS


PHIS7_SALTY
IMIDAZOLEGLYCEROL-
SALMONELLA TYPHIMURIUM
161-199



PHOSPHATE DEHYDRATAS


PHIS8_ECOLI
HISTIDINOL-PHOSPHATE
ESCHERICHIA COLI
290-317



AMINOTRANSFERASE


PHIS8_HALVO
HISTIDINOL-PHOSPHATE
HALOBACTERIUM VOLCANII
174-201



AMINOTRANSFERASE


PHIS8_LACLA
HISTIDINOL-PHOSPHATE
LACTOCOCCUS LACTIS
161-188



AMINOTRANSFERASE


PHIS8_SALTY
HISTIDINOL-PHOSPHATE
SALMONELLA TYPHIMURIUM
293-320



AMINOTRANSFERASE


PHISQ_SALTY
HISTIDINE PERMEASE MEMBRANE
SALMONELLA TYPHIMURIUM
8-35



Q PROTEIN


PHISX_ECOLI
HISTIDINOL DEHYDROGENASE
ESCHERICHIA COLI
393-434


PHISX_LACLA
HISTIDINOL DEHYDROOENASE
LACTOCOCCUS LACTIS
19-46
264-303


PHISX_MYCSM
HISTIDINOL DEHYDROGENASE
MYCOBACTERIUM SMEGMATIS
288-329
399-430


PHISX_SALTY
HISTIDINOL DEHYDROGENASE
SALMONELLA TYPHIMURIUM
393-434


PHLA_STAAU
ALPHA-HEMOLYSIN PRECURSOR
STAPHYLOCOCCUS AUREUS
69-103


PHLY1_ECOLI
HEMOLYSIN A, CHROMOSOMAL
ESCHERICHIA COLI
5-32
76-103
161-224
234-261
353-380
458-492
554-581
642-728


PHIY2_ECOLI
HAEMOLYSIN SECRETION PROTEIN
ESCHERICHIA COLI
487-514



CHROMOSOMA


PHIY4_ECOLI
HEMOLYSIN D, CHROMOSOMAL
ESCHERICHIA COLI
103-133
178-215
223-331


PHLYA_ACTPL
HEMOLYSIN
ACTINO BACILLUS PLEUROPNEUMONIAE
5-39
136-170
184-218
273-300
350-377
459-527
846-924


PHLYA_ACTSU
HEMOLYSIN
ACTINO BACILLUS SUIS
5-39
136-170
184-218
273-300
350-377
459-500
846-924


PHLYA_ECOLI
HEMOLYSIN A, PLASMID
ESCHERICHIA COLI
5-32
76-103
161-262
354-381
452-493
555-582
643-729


PHLYA_PROMI
HEMOLYSIN PRECURSOR
PROTEUS MIRABILIS
165-196
299-338
356-400
425-471
498-525
528-576
610-695
705-742
747-774





789-823
841-868
966-993
1113-
1166-
1225-
1301-
1391-
1483-








1140
1193
1273
1342
1461
1527


PHLYA_SERMA
HEMOLYSIN PRECURSOR
SERRATIA MARCESCENS
311-345
477-504
558-585
625-703
718-745
830-864
1081-
1155-
1249-











1108
1202
1286





1516-





1553


PHLYA_VIBCH
HEMOLYSIN PRECURSOR
VIBRIO CHOLERAE
335-369
638-665


PHLYB_ACTPL
HAEMOLYSIN SECRETION PROTEIN
ACTINO BACILLUS PLEUROPNEUMONIAE
34-61


PHLYB_ECOLI
HAEMOLYSIN SECRETION PROTEIN,
ESCHERICHIA COLI
487-514



PLASMID


PHLYB_PROMI
HEMOLYSIN ACTIVATOR PROTEIN
PROTEUS MIRABILIS
16-64
499-547



PRECURSOR


PHLYB_PROVU
HAEMOLYSIN SECRETION PROTEIN
PROTEUS VULGARIS
34-68
487-514


PHLYB_SERMA
HEMOLYSIN ACTIVATOR PROTEIN
SERRATIA MARCESCENS
110-137



PRECURSOR


PHLYB_VIECH
HEMOLYSIN SECRETION PROTEIN
VIBRIO CHOLERAE
335-398
413-447
458-524



PRECURSOR


PHLYC_ACTPL
HEMOLYSIN C
ACTINO BACILLUS PLEUROPNEUMONIAE
130-157


PHLYD_ACTPL
HEMOLYSIN SECRETION PROTEIN APPD
ACTINO BACILLUS PLEUROPNEUMONIAE
191-331


PHLYD_ECOLI
HEMOLYSIN D,PLASMID
ESCHERICHIA COLI
103-133
178-215
223-331


PHLY_HAL17
HALOLYSIN PRECURSOR
HALOPHILIC BACTERIA STRAIN 172P1
484-516


PHMC3_DESVH
43.2 KD PROTEIN IN HMC OPERON
DESULFOVIBRIO VULGARIS
156-186


PHMD_METKA
H(2)-FORMING DEHYDROGENASE
METHANOPYRUS KANDLERI
36-63


PHNS_SERMA
DNA-BINDING PROTEIN H-NS
SERRATIA MARCESCENS
35-62


PHOLA_ECOLI
DNA POLYMERASE III, DELTA SUBUNIT
ESCHERICHIA COLI
94-121
288-322


PHOXA_BRAJA
REG PROTEIN HOXA
BRADYRHIZOBIUM JAPONICUM
113-163
444-471


PHOXF_NOCOP
HOXS ALPHA SUBUNIT
NOCARDIA OPACA
4-31


PHOXQ_ALCEU
HOXX PROTEIN
ALCALIGEES EUTROPHUS
76-110


PHOXX_BRAJA
HOXX PROTEIN
BRADYRHIZOBIUM JAPONICUM
356-383


PHPI_DEIRA
HEXAGONALLY SURFACE PROTEIN
DEINOCOCCUS RADIODURANS
585-612



PRECURSOR


PHPRT_LACLA
PHOSPHORIBOSYLTRANSFERASE
LACTOCOCCUS LACTIS
3-39
71-105


PHRDD_STRCO
SIGMA FACTOR HRDD
STREPTMYCES COELICOLOR
296-323


PHRPB_BURSO
REGULATORY PROTEIN HRPB
BURKHOLDERIA SOLANACEARUM
371-405


PHRPH_PSESY
OUTER MEMBRANE PROTEIN HRPH
PSEUDOMONAS SYRINGAE
102-129
310-344



PRECURSOR


PHRPS_PSESH
PROBABLY REGULATORY PROTEIN
PSEUDOMONAS SYRINGAE
24-51



HRPS


PHS18_CLOAB
18 KD HEAT SHOCK PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
67-108


PHS70_HALMA
HEAT SHOCK 70 KD PROTEIN
HALOARCULA MARISMORTUI
522-576


PHS70_MYCLE
HEAT SHOCK 70 KD PROTEIN
MYCOBACTERIUM LEPRAE
461-488
503-530


PHS70_MYCPA
HEAT SHOCK 70 KD PROTEIN
MYCOBACTERIUM PARATUBERCULOSIS
460-487


PHTPG_ECOLI
HEAT SHOCK PROTEIN C625
ESCHERICHIA COLI
221-248
482-509


PHTRA_ECOLI
PROTEASE DO PRECURSOR
ESCHERICHIA COLI
373-400


PHTRE_ECOLI
HTRE PROTEIN PRECURSOR
ESCHERICHIA COLI
454-484
524-576


PHTRI_HALHA
SENSORY RHODOPSIN I TRANSDUCER
HALOBACTERIUM HALOBIUM
413-471
479-506


PHTRI_HALSA
SENSORY RHODOPSIN I TRANSDUCER
HALOBACTERIUM SALINARIUM
114-149
413-471
479-506


PHUTP_BACSU
HUT OPERON POSITIVE
BACILLUS SUBTILIS
5-36



REGULATORY PROTEIN


PHVTJ_LACHE
HELVETICIN J
LACTOBACILLUS HELVETICUS
174-212
306-333


PHYCA_ECOLI
FORMATE HYDROGENL YASE SUBUNIT I
ESCHERICHIA COLI
73-100
106-133


PHYDO_ECOLI
TRANSCRIPTIONAL REGULATORY
ESCHERICHIA COLI
251-278



PROTEIN HYDG


PHYDG_SALTY
TRANSCRIPTIONAL REGULATORY
SALMONELLA TYPHIMURIUM
251-278



PROTEIN HYDO


PHYDH_ECOLI
SENSOR PROTEIN HYDH
ESCHERICHIA COLI
312-339
360-387


PHYUB_PSESN
HYDANTOIN UTILIZATION PROTEIN B
PSEUDOMONAS SP
554-581


PHYUC_PSESN
HYDANTOIN UTILIZATION PROTEIN
PSEUDOMONAS SP
6-40
96-123


PIAAL_PSESS
INDOLEACETATE-LYSINE LIGASE
PSEUDOMONAS SYRINGAE
133-160
297-331


PIAP_ECOLI
ALK PHOS ISOZYME CONVERSION
ESCHERICHIA COLI
74-101



PROTEIN


PICEN_EAWAN
ICE NUCLEATION PROTEIN
ERWINIA ANANAS
326-353
422-449
534-561
614-641
662-689
721-748
758-785
854-881
950-977





1046-





1073


PICEN_ERWHE
ICE NUCLEATION PROTEIN
ERWINIA HERBICOLA
310-337
406-433
534-561
646-673
694-721
838-865
886-913
982-












1009


PICEN_PSEFL
ICE NUCLEATION PROTEIN
PSEUDOMONAS FLUORESCENS
281-308
377-404
425-452
681-708
729-781
795-852


PICEN_PSESY
ICE NUCLEATION PROTEIN
PSEUDOMONAS SYRINGAE
564-602
772-847
868-895
909-943


PICEN_XANCT
ICE NUCLEATION PROTEIN
XANTHOMONAS CAMPESTRIS
496-534
555-582
1168-
1248-







1204
1273


PICSB_SHIFL
INTERCELLULAR SPREAD PROTEIN
SHIGELLA FLEXNERI
41-105
438-467


PIF2_BACST
INITIATION FACTOR IF-2
BACILLUS STEAROTHERMOPHILUS
540-567
681-708


PIF2_BACSU
INITIATION FACTOR IF-2
BACILLUS SUBTILIS
173-208
394-421


PIF2_ECOLI
INITIATION FACTOR IF-2
ESCHERICHIA COLI
686-724
835-862


PIF2_ENTFC
INITIATION FACTOR IF-2
ENTEROCOCCUS FAECIUM
579-627


PIF3_BACST
INITIATION FACTOR IF-3
BACILLUS STEAROTHERMOPHILUS
7-34


PIF3_ECOLI
INITIATION FACTOR IF-3
ESCHERICHIA COLI
27-54
70-97


PIF3_KLEPN
INITIATION FACTOR IF-3
KLEBSIELLA PNEUMONIAE
27-54
70-97


PIF3_MYCFE
INITIATION FACTOR IF-3
MYCOPLASMA FERMENTANS
177-211


PIF3_PROVU
INITIATION FACTOR IF-3
PROTEUS VULGARIS
2-29
70-97


PIF3_SALTY
INITIATION FACTOR IF-3
SALMONELLA TYPHIMURIUM
27-54
70-97


PIF3_SERMA
INITIATION FACTOR IF-3
SERRATIA MARCESCENS
19-46
70-97


PIGA_NEIGO
IGA-SPECIFIC SERINE ENDOPEPTIDASE
NEISSERIA GONORRHOEAE
245-272
287-314
833-860
1024-
1377-
1483-








1058
1404
1531


PIGGB_STRSP
IGG BINDING PROTEIN PRECURSOR
STREPTOCOCCUS SP
46-76
120-150
195-222


PIGGB_STRSP
IGG BINDING PROTEIN PRECURSOR
STREPTOCOCCUS SP
46-76
120-150
195-222
270-297


PILVH_ECOLI
ACETOLACTATE SYNTHASE
ESCHERICHIA COLI
47-81
120-147


PILVH_SALTY
ACETOLACTATE SYNTHASE
SALMONELLA TYPHIMURIUM
47-81
120- 147


PILVN_LACLA
ACETOLACTATE SYNTHASE
LACTOCOCCUS LACTIS
20-75


PIMPE_SALTY
IMPB PROTEIN
SALMONELLA TYPHIMURIUM
185-212


PIMP_ACICA
INOSINE-5′-MONOPHOSPNATE
ACINETOBACTER CALCOACETICUS
166-193



DEHYDROGENASE


PIMP_BACSU
E-5′-MONOPHOSPHATE DEOIYDROGENASE
BACILLUS SUBTILIS
159-186


PINA_BACTL
IMMUNE INHIBITOR A PRECURSOR
BACILLUS THURINGIENSIS
103-130
324-358


PINLA_LISMO
INTERNALIN A
LISTERIA MONOCYTOGENES
106-143
161-188
196-232


PINLB_LISMO
INTERNALIN B PRECURSOR
LISTERIA MONOCYTOGENES
53-94
166-200
385-415


PINVA_YEREN
INVASIN
VERSINIA ENTEROCOLITICA
501-535


PIPA7_SHIFL
60 KD ANTIGEN
SHIGELLA FLEXNERI
285-312


PIPAA_SHIFL
70 KD ANTIGEN
SHIGELLA FLEXNERI
95-136
437-475
493-557
596-630


PIPAB_SHIDY
62 KD MEMBRANE ANTIGEN
SHIGELLA DYSENTERIAE
28-55
71-169
480-507
522-556


PIPAB_SHIFL
62 KD MEMBRANE ANTIGEN
SHIGELLA FLEXNERI
28-55
71-169
480-507
522-556


PIPAC_SHIFL
42 KD MEMBRANE ANTIGEN PRECURSOR
SHIGELLA FLEXNERI
28-57
113-161
273-300
324-372


PIPAD_SHIDY
37 KD MEMBRANE ANTIGEN IPAD
SHIGELLA DYSENTERIAE
47-86
291-318


PIPAD_SHIFL
36 KD MEMBRANE ANTIGEN
SHIGELLA FLEXNERI
47-86
259-286
291-318


PIPGB_SHIDY
IPGB PROTEIN
SHIGELLA DYSENTERIAE
175-202


PIPGB_SHIFL
IPGB PROTEIN
SHIGELLA FLEXNERI
175-202


PIPT_PSESS
ISOPENTENYL TRANSFERASE
PSEUDOMONAS SYR1NGAE
53-87
143-173


PIPYR_ECOLI
INORGANIC PYROPHOSPHATASE
ESCHERICHIA COLI
138-172


PIRGA_VIBCH
VIRULENCE PROTEIN PRECURSOR
VIERIO CHOLERAS
212-239
336-377


PIRGB_VIBCH
VIRULENCE REGULATORY PROTEIN IRGB
VIERIO CHOLERAE
67-97


PIRPA_SYNP7
IRON-REGULATED PROTEIN A
SYNECHOCOCCUS SP
167-194


PISBD_SHIDY
INSERTION ELEMENT ISO-ISID
SHIGELLA DYSENTERIAE
86-113



PROTEIN INSB


PISBN_SHIDY
INSERTION ELEMENT ISO-ISIN
SHIGELLA DYSENTERIAE
6-37



PROTEIN INSB


PISB_ECOLI
INSERTION ELEMENT IS1
ESCHERICHIA COLI
122-149



PROTEIN INSB


PISB_SHIFL
INSERTION ELEMENT IS1
SHIGELLA FLEXNERI
86-113



PROTEIN INSB


PISB_SHISO
INSERTION ELEMENT IS1
SHIGELLA SONNEI
86-113



PROTEIN INSB


PISPI_BACSU
MAJOR INTRACELLULAR SERINE
BACILLUS SUBTILIS
115-142
197-224
253-280



PROTEASE


PISPI_BACPO
INTRACELLULAR SERINE PROTEASE
BACILLUS POLYMYXA
109-143


PISTA_ECOLI
ISTA PROTEIN
ESCHERICHIA COLI
183-210


PISTA_SHISO
ISTA PROTEIN
SHIGELLA SONNEI
183-210


PIUTA_ECOLI
FERRIC AEROBACTIN RECEPTOR
ESCHERICHIA COLI
186-213
525-552
539-593



PRECURSOR


PJAG_BACSU
JAG PROTEIN
BACILLUS SUBTILIS
68-95


PK6P2_ECOLI
6-PHOSPHOFRUCTOKINASE ISOZYME 2
ESCHERICIA COLI
143-170


PKAD_BACSU
ADENYLATE KINASE
BACILLUS SUBTILIS
188-215


PKAD_LACLA
ADENYLATE KINASE
LACTOCOCCUS LACTIS
186-213


PKANU_BACSP
KANAMYCIN NUCLEOTIDYL-
BACILLUS SP
69-96



TRANSFERASE


PKANU_STAAU
KANAMYCIN NUCLEOTIDYL-
STAPHYLOCOCCUS AUREUS
69-96



TRANSFERASE


PKDGT_ECOLI
2-KETO-3-DEOXYGLUCONATE PERMEASE
ESCHERICHIA COLI
70-97


PKDGT_ERWCH
2-KETO-3-DEOXYGLUCONATE PERMEASE
ERWINIA CHRYSANTHEMI
126-153


PKDTA_ECOLI
3-DEOXY-D-MANNO-OCTULOSONIC-
ESCHERICHIA COLI
369-396



ACID TRANS


PKGTP_ECOLI
ALPHA-KETOGLUTARATE PERMEASE
ESCHERICHIA COLI
7-34


PKGUA_ECOLI
GUANYLATE KINASE
ESCHERICHIA COLI
162-189


PKHSE_BACSU
HOMOSERINE KINASE
BACILLUS SUBTILIS
49-76


PKHSE_FREDI
HOMOSERINE KINASE
FREMYELLA DIPLOSIPHON
52-79


PKKA4_BACCI
AMINOGLYCOSIDE 3′-
BACILLUS CIRCULANS
12-39



PHOSPHOTRANSFERASE


PKORB_ECOLI
KORB TRANSCRIPTIONAL
ESCHERICHIA COLI
228-255



REPRESSOR PROTEIN


PKPYI_SPICI
PYRUVATE KINASE
SPIROPLASMA CITRI
112-148


PKPYK_BACST
PYRUVATE KINASE
BACILLUS STEAROTHERMOPHILUS
331-374


PLACA_STAAU
ISOMERASE LACA SUBUNIT
STAPHYLOCOCCUS AUREUS
9-64


PLACA_STRMU
ISOMERASE LACA SUBUNIT
STREPTOCOCCUS MUTANS
26-60


PLACC_STRMU
TAGATOSE-6-PHOSPHATEKINASE
STREPTOCOCCUS MUTANS
56-83
233-310


PLACO_LACCA
6-PHOSPHO-BETA-GALACTOSIDASE
LACTOBACILLUS CASEI
290-317


PLACI_ECOLI
LACTOSE OPERON REPRESSOR
ESCHERICHIA COLI
9-36


PLACI_KLEPN
LACTOSE OPERON REPRESSOR
KLEBSIELLA PNEUMONIAE
195-229


PLACR_STAAU
PHOSPHOTRANSFERASE REPRESSOR
STAPHYLOCOCCUS AUREUS
2-29


PLACR_STRMU
PHOSPHOTRANSFERASE REPRESSOR
STREPTOCOCCUS MUTANS
2-32


PLACY_LACDE
LACTOSE PERMEASE
LACTO BACILLUS DELBRUECKII
196-230


PLAFB_VIBPA
FLAGELLAR HOOK-ASSOCIATED
VIBRIO PARAHAEMOLYTUCS
62-89
388-415



PROTEIN 2


PLAMB_KLEPN
MALTOPORIN PRECURSOR
KLEBSIELLA PNEUMONIAE
337-364


PLAMI_CLOTM
ENDO-1,-3(4)-BETA-GLUCANASE
CLOSTRIDIUM THERMOCELLUM
132-159



PRECURSOR


PLASI_PSEAE
OHHL SYNTHESIS PROTEIN LASI
PSEUDOMONAS AERUGINOSA
171-198


PLCCI_LEUGE
PROBABLE LEUCOCIN A IMMUNITY
LEUCONOSTOC GELIDUM
41-71



PROTEIN


PLCNC_LACLA
LACTOCOCCIN A SECRETION
LACTOCOCCUS LACTIS
162-189
207-234
388-433



PROTEIN LCNC


PLCND_LACLA
LACTOCOCCIN A SECRETION PROTEIN
LACTOCOCCUS LACTIS
99-126
140-202
237-307



LCND


PLCRD_YEREN
LOW CALCIUM RESPONSE LOCUS PROTEIN
YERSINIA ENTEROCOLITICA
122-149
491-518



D


PLCRD_YERPE
LOW CALCIUM RESPONSE LOCUS PROTEIN
VERSINIA PESTIS
122-149
491-518



D


PLCRV_YERPE
VIRULENCE-ASSOCIATED V ANTIGEN
VERSINIA PESTIS
22-49
157-184
240-267


PLCRV_YERPS
VIRULENCE-ASSOCIATED V ANTIGEN
YERSINIA PSEUDOTUBERCULOSIS
22-49
240-267


PLCTB_BACCA
LCTB PROTEIN
BACILLUS CALDOTENAX
18-45


PLCTB_BACST
LCTB PROTEIN
BACILLUS STEAROTHERMOPHILUS
14-45


PLDHD_LACPL
D-LACTATE DEHYDROGENASE
LACTOBACILLUS PLANTARUM
51-81


PLDHP_BACPS
L-LACTATE DEHYDROGENASE P
BACILLUS PSYCHROSACCHAROLYTICUS
2-43
241-272
279-306


PLDHX_BACPS
L-LACTATE DEHYDROGENASE X
BACILLUS PSYCHROSACCHAROLYTICUS
2-43
241-275
279-306


PLDH_BACME
L-LACTATE DEHYDROGENASE
BACILLUS MEGATERIUM
224-274


PLDH_BACTS
L-LACTATE DEHYDROGENASE
BACILLUS STEAROTHERMOPHILUS
241-268
279-313


PLDH_BACSU
L-LACTATE DEHYDROGENASE
BACILLUS SUBTILIS
8-42
240-267


PLDH_BIFLO
L-LACTATE DEHYDROGENASE
BIFIDOBACTERIUM LONGUM
22-49


PLDH_LACPL
L-LACTATE DEHYDROGENASE
LACTOBACILLUS PLANTARUM
197-231


PLDH_LISMO
L-LACTATE DEHYDROGENASE
LISTERIA MONOCYTOGENES
42-69


PLDH_MYCHY
L-LACTATE DEHYDROGENASE
MYCOPLASMA HYOPNEUMONIAE
276-310


PLDH_THEAQ
L-LACTATE DEHYDROGENASE
THERMUS AQUATICUS
3-30


PLEF_BACAN
LETHAL FACTOR PRECURSOR
BACILLUS ANTHRACIS
165-192
304-331
480-514
548-578
619-658
737-764


PLEPA_PSEFL
LEPA PROTEIN
PSEUDOMONAS FLUORESCENS
23-50


PLEP_BACSU
SIGNAL PEPTIDASE I
BACILLUS SUBTILIS
3-30


PLEUI_ECOLI
2-ISOPROPYLMALATE SYNTHASE
ESCHERICHIA COLI
437-464


PLEUI_LACLA
2-ISOPROPYLMALATE SYNTHASE
LACTOCOCCUS LACTIS
22-49
379-484


PLEU3_BACCO
3-ISOPROPYLMALATE DEHYDROGENASE
BACILLUS COAGULANS
331-358


PLEU3_CLOPA
3-ISOPROPYLMALATE DEHYDROGENASE
CLOSTRIDIUM PASTEURIANUM
185-212


PLEUD_LACLA
3-ISOPROPYLMALATE DEHYDRATASE
LACTOCOCCUS LACTIS
163-190


PLEVR_BACSU
TRANSCRIPTIONAL REGULATORY
BACILLUS SUBTILIS
297-324
676-703
744-774
785-822



PROTEIN LEVR


PLEXA_ERWCA
LEXA REPRESSOR
ERWINIA CAROTOVORA
146-173


PLIP1_MORSP
LIPASE 1
MORAXELLA SP
26-53


PLIP2_MORSP
LIPASE 2
MORAXELLA SP
356-383


PLIPB_ECOLI
LIPB PROTEIN
ESCHERICHIA COLI
66-93


PLIP_BURCE
LIPASE PRECURSOR
BURKHOLDERIA CEPACIA
176-203


PLIP_PSEFL
LIPASE PRECURSOR
PSEUDOMONAS FLUORESCENS
8-35


PLIP_PSESS
LIPASE PRECURSOR
PSEUDOMONAS SP
176-203


PLIP_STAAU
LIPASE PRECURSOR
STAPHYLOCOCCUS AUREUS
80-146
512-546


PLIVB_SALTY
LEU/ILE/VAL/THR-BINDING
SALMONELLA TYPHIMURIUM
193-220



PROTEIN PRECURSOR


PLIVC_SALTY
LEUCINE-SPECIFIC BINDING
SALMONELLA TYPHIMURIUM
195-222



PROTEIN PRECURSOR


PLIVE_SALTY
AMINO ACID TRANSPORT
SALMONELLA TYPHIMURIUM
121-148



PROTEIN LIVE


PLIVF_ECOLI
AMINO ACID TRANSPORT
ESCHERICHIA COLI
23-50



PROTEIN LIVE


PLIVJ_CITFR
LEU/ILE/VAL-BINDING PROTEIN
CITROBACTER FREUNDII
195-222



PRECURSOR


PLIVJ_ECOLI
LEU/ILE/VAL-BINDING PROTEIN
ESCHERICHIA COLI
195-222



PRECURSOR


PLIVK_ECOLI
LEUCINE-SPECIFIC BINDING
ESCHERICHIA COLI
195-222



PROTEIN PRECURSOR


PLIVM_ECOLI
AMINO ACID TRANSPORT
ESCHERICHIA COLI
121-148



PROTEIN LIVM


PLKTA_ACTAC
LEUROTOXIN
ACTONO BACILLUS ACTINOMYCETEMCOMITANS
113-147
173-213
398-443
451-488
593-620
655-711


PLKTA_PASHA
LEUKOTOXIN
PASTEURELLA HAEMOLYTICA
53-99
179-216 345-372
409-436
455-482
496-530
545-572
811-838
853-926


PLKTB_ACTAC
LEUKOTOXIN SECRETION PROTEIN
ACTINO BACILLUS ACTINOMYCETEMCOMITANS
487-514


PLKTB_PASHA
LEUKOTOXIN SECRETION PROTEIN
PASTEURELLA HAEMOLYTICA
42-69
78-105
488-515


PLKTC_ACTAC
LTC PROTEIN
ACTINO BACILLUS ACTINOMYCETEMCOMITANS
58-85
116-150


PLKTC_PASHA
LKTC PROTEIN
PASTEURELLA HAEMOLYTICA
123-157


PLKTD_ACTAC
LKTD PROTEIN
ACTINO BACILLUS ACTINOMYCETEMCOMITANS
116-164
205-243
278-305
364-391


PLKTD_PASHA
LKTD PROTEIN
PASTEURELLA HAEMOLYTICA
184-289


PLON _ECOLI
ATP-DEPENDENT PROTEASE LA
ESCHERICHIA COLI
121-184


PLPXA_RICRI
UDP-N-ACETYLGLUCOSAMINE
RICKETTSIA RICKETTSII
229-256



ACYLTRANSFERASE


PLSPA_ECOLI
LIPOPROTEIN SIGNAL PEPTIDASE
ESCHERICHIA COLI
10-37


PLSPA_STAAU
LIPOPROTEIN SIGNAL PEPTIDASE
STAPHYLOCOCCUS AUREUS
134-161


PLUKF_STAAU
LEUKOCIDINE F SUBUNIT PRECURSOR
STAPHYLOCOCCUS AUREUS
161-195


PLUKS_STAAU
LEUKOCIDIN S SUBUNIT PRECURSOR
STAPHYLOCOCCUS AUREUS
157-207


PLEXA_KRYAL
ALKANAL MONOOXYGENASE ALPHA CHAIN
KRYPTOPHANARON ALFREDI
190-217


PLUXB_PHOPO
ALKANAL MONOOXYGENASE BETA CHAIN
PHOTOBACTERIUM PHOSPHOREUM
188-217
257-291


PLUXB_VIBHA
ALKANAL MONOOXYGENASE BETA CHAIN
VIBRIO HARVEYI
373-400


PLUXC_PHOLE
ACYL-COA REDUCTASE
PHOTOBACTERIUM LEIOGNATHI
44-81


PLUXC_PHOPO
ACYL-COA REDUCTASE
PHOTOBACTERIUM PHOSPHOREUM
54-91


PLUXC_VIBFI
ACYL-COA REDUCTASE
VIBRIO FISCHERI
16-65


PLUXC_XENLU
ACYL-COA REDUCTASE
XENORHABDUS LUMINESCENS
39-69


PLUXD_PHOLE
ACYL TRANSFERASE
PHOTOBACTERIUM LEIOGNATHI
89-119
218-245


PLUXE_VIBHA
LUCIFERIN-COMPONENT LIGASE
VIBRIO HARVEYI
30-57


PLUXJ_PHOLE
NON-FLUORESCENT FLAVOPROTEIN
PHOTOBACTERIUM LEIOGNATHI
145-172


PLUXF_PHOPO
NON-FLUORESCENT FLAVOPROTEIN
PHOTOBACTERIUM PHOSPHOREUM
37-85
99-126


PLUXG_VIBFI
PROBABLE FLAVIN REDUCTASE
VIBRIO FISCHERI
137-168


PLUXH_VIBHA
LUXH PROTEIN
VIBRIO HARVEYI
96-123


PLUXI_VIBFI
OHHL SYNTHESIS PROTEIN LUXI
VIBRIO FISCHERI
30-58


PLUXI_VIRFI
OHHL SYNTHESIS PROTEIN LUXI
VIBRIO FISCHERI
30-57


PLUXP_PHOPO
LUMAZINE PROTEIN
PHOTOBACTERIUM PHOSPHOREUM
51-85
162-189


PLUXR_VIBHA
LUXR REGULATORY PROTEIN
VIBR2O HARVEYI
61-88


PLXBI_PHOLE
ALKANAL MONOOXYGENASE
PHOTOBACTERIUM LEIOGNATHI
268-295



BETA CHAIN


PLXB2_PHOLE
ALKANAL MONOOXYGENASE
PHOTOBACTERIUM LEIOGNATHI
228-255



BETA CHAIN


PLYB_BACSU
B-ENZYME
BACILLUS SUBTILIS
87-114


PLYC_CLOAB
AUTOLYTIC LYSOZYME
CLOSTRIDIUM ACETOBUTYLICUM
91-118


PLYSP_ECOLI
LYSINE-SPECIFIC PERMEASE
ESCHERICHIA COLI
142-176


PLYTB_BACSU
AMIDASE ENHANCER PRECURSOR
BACILLUS SUBTILIS
55-82
150-177
467-513
555-585


PLYTB_ECOLI
LYTB PROTEIN
ESCHERICHIA COLI
210-237


PLYTC_BACSU
AMIDASE PRECURSOR
BACILLUS SUBTILIS
179-213
225-252


PLYTR_BACSU
MEMBRANE-BOUND PROTEIN LYTR
BACILLUS SUBTILIS
13-64
259-303


PMI2_STRPY
M PROTEIN, SEROTYPE 12 PRECURSOR
STREPTOCOCCUS PYOGENES
46-92
114-156
191-300
305-342
383-417
436-494


PM24_STRPY
M PROTEIN, SEROTYPE 24 PRECURSOR
STREPTOCOCCUS PYOGENES
12-46
89-128
175-202
245-272
280-313
399-457


PM49_STRPY
M PROTEIN, SEROTYPE 49 PRECURSOR
STREPTOCOCCUS PYOGENES
12-174
269-327


PM5_STRPY
M PROTEIN, SEROTYPE 5 PRECURSOR
STREPTOCOCCUS PYOGENES
5-39
56-263
306-333
352-410


PM6_STRPY
M PROTEIN, SEROTYPE 6 PRECURSOR
STREPTOCOCCUS PYOGENES
12-39
70-282
290-324
343


PMALE_ECOLI
MALTOSE-BINDING PROTEIN PRECURSOR
ESCHERICHIA COLI
20-47


PMALE_ENTAE
MALTOSE-BINDING PROTEIN PRECURSOR
ENTEROBACTER AEROGENES
20-47


PMALK_ENTAE
INNER MEMBRANE PROTEIN MALK
ENTEROBACTER AEROGENES
3-30


PMALT_ECOLI
MALT REGULATORY PROTEIN
ESCHERICHIA COLI
852-879


PMALX_STRPN
MALX PROTEIN PRECURSOR
STREPTOCOCCUS PNEUMONIAE
40-67
180-207


PMANB_BACSM
1,4-BETA-MANNOSIDASE A AND B PREC
BACILLUS SP
410-441


PMANB_CALSA
B-MANNANASE/ENDOGLUCANASE A PREC
CALDOCELLUM SACCHAROLYTICUM
389-423
592-626
1222-
1296-







1256
1323


PMAOX_BACST
MALATE OXIDOREDUCTASE
BACILLUS STEAROTHERMOIHILUS
246-273


PMARR_ECOLI
ANTIBIOTIC RESISTANCE PROTEIN MARR,
ESCHERICHIA COLI
95-122


PMBEB_ECOLI
MOBILIZATION PROTEIN MBEB
ESCHERICHIA COLI
38-65
100-134


PMBHL_WOLSU
QUINONE-REAC NI/FE-HYDROGENASE
WOLINELLA SUCCINOGENES
440-471


PMCBB_ECOLI
MCBB PROTEIN
ESCHERICHIA COLI
47-74
122-163


PMCBD_ECOLI
MCBD PROTEIN
ESCHERICHIA COLI
172-206
226-253
306-345


PMCPI_ECOLI
METHYL-ACCEPTING CHEMOTAXIS
ESCHERICHIA COLI
272-299



PROTEIN I


PMCP2_ECOLI
METHYL-ACCEPTING CHEMOTAXIS
ESCHERICHIA COLI
258-306



PROTEIN II


PMCP2_SALTY
METHYL-ACCEPTING CHEMOTAXIS
SALMONELLA TYPHIMURIUM
258-306



PROTEIN II


PMCP3_ECOLI
METHYL-ACCEPTING CHEMOTAXIS
ESCHERICHIA COLI
288-315



PROTEIN III


PMCP4_ECOLI
METHYL-ACCEPTING CHEMOTAXIS
ESCHERICHIA CDLI
111-145
164-191
277-304



PROTEIN IV


PMCPA_CAUCR
CHEMORECEPTOR MCPA
CAULOBACTER CRESCENTUS
260-287
369-403
516-543


PMCPC_SALTY
CHEMOTAXIS CITRATE TRANSDUCER
SALMONELLA TYPHIMURIUM
314-348


PMCPD_ENTAE
CHEMOTAXIS ASPARTATE TRANSDUCER
ENTEROBACTER AEROGENES
275-302


PMCPS_ENTAE
CHEMOTAXIS SERINE TRANSDUCER
ENTEROBACTER AEROGENES
41-68
158-208
317-351
488-522


PMCRA_ECOLI
SPECIFIC RESTRICTION ENZYME A
ESCHERICHIA COLI
37-71


PMCRA_METBA
METHYL-COENZYME M REDUCTASE
METHANOSARCINA BARKERI
375-405


PMCRA_METVA
METHYL-COENZYME M REDUCTASE
METHANOCOCCUS VANNIELII
335-362


PMCRA_METVO
METHYL-COENZYME M REDUCTASE
METHANOCOCCUS VOLTAE
336-363


PMCRB_METFE
METHYL-COENZYME M REDUCTASE METHANOTHERMUS FERVIDUS
267-294


PMCRB_METVO
METHYL-COENZYME M REDUCTASE
METHANOCOCCUS VOLTAE
247-274


PMCRC_ECOLI
MCRC PROTEIN
ESCHERICHIA COLI
111-145


PMCRD_METVO
REDUCTASE OPERON PROTEIN D
METHANOCOCCUS VOLTAE
54-91


PMDH_ECOLI
MALATE DEHYDROGENASE
ESCHERICHIA COLI
127-154


PMDH_METFE
MALATE DEHYDROGENASE
METHANOTHERMUS FERVIDUS
54-88


PMDH_SALTY
MALATE DEHYDROGENASE
SALMONELLA TYPHIMURIUM
127-154


PMDL_ECOLI
MDL PROTEIN
ESCHERICHIA COLI
464-491
684-711
992-







1019


PMDOH_ECOLI
BIOSYNTHESIS PROTEIN MDOH
ESCHERICHIA COLI
119-152


PMECI_STAEP
METHICILLIN RESIS REG PROTEIN MED
STAPHYLOCOCCUS
88-122




EPIDERMIDIS &AUREUS


PMECR_STAEP
METHICILLIN RESISTANCE MECRI
STAPHYLOCOCCUS
439-495
546-573



PROTEIN
EPIDERMIDIS &AUREUS


PMEMB_METCA
METHANE MONOOXYGENASE
METHYLOCOCCUS CAPSULATUS
214-248



COMPONENT A


PMEMB_METTR
METHANE MONOOXYGENASE
METHYLOSINUS TRICHOSPORIUM
321-348



COMPONENT A


PMEND_ECOLI
SHCHC SYNTHASE
ESCHERICHIA COLI
333-367


PMER4_STELI
PROBABLE HG TRANSPORT PROTEIN
STREPTOMYCES LIVIDANS
159-186


PMERA_BACSR
MERCURIC REDUCTASE
BACILLUS SP
146-180


PMERA_STAAU
MERCURIC REDUCTASE
STAPHYLOCOCCUS AUREUS
292-347
352-386


PMERR_STAAU
MERCURIC RESISTANCE OPERON
STAPHYLOCOCCUS AUREUS
86-113



REG PROTEIN


PMETB_ECOLI
CYSTATHIONINE GAMMA-SYNTHASE
ESCHERICHIA COLI
356-383


PMETC_ECOLI
CYSTATHIONINE BETA-LYASE
ESCHERICH1A COLI
363-390


PMETC_SALTY
CYSTATHIONINE BETA-LYASE
SALMONELLA TYPHIMURIUM
2-29


PMETE_ECOLI
METHIONINE SYNTHASE
ESCHERICHIA COLI
448-482


PMETH_ECOLI
METHIONINE SYNTHASE
ESCHERICHIA COLI
311-398
642-676


PMFD_ECOLI
TRANSCRIPTION-REPAIR COUPLING
ESCHERICHIA COLI
185-212



FACTOR


PHGLA_ECOLI
GALACTOSIDE-BINDING PROTEIN
ESCHERICHIA COLI
62-89
312-380


PMINC_BACSU
SEPTUM SITE-DETERMINING
BACILLUS SUBTILIS
65-122



PROTEIN MINC


PMIOC_ECOLI
MIOC PROTEIN
ESCHERICHIA COLI
102-129


PMIP_CHLTR
27 KD MEMBRANE PROTEIN PRECURSOR
CHALMYDIA TRACHOMATIS
41-75


PMIP_LEGMI
OUTER MEMBRANE PROTEIN MIP
LEGIONELLA MICDADEI
106-133



PRECURSOR


PMLSI_ENTFA
RRNA ADENINE N-6-
ENTEROCOCCUSFAECALIS
4-81
120-154



METHYLTRANSFERASE


PMLSI_STAAU
RRNA ADENINE N-6-
STAPHYLOCOCCUS AUREUS
9-47



METHYLTRANSFERASE


PMLS2_ENTPA
RRNA ADENINE N-6-
ENTEROCOCCUS FAECALIS
4-81
120-154



METHYLTRANSPERASE


PMLSB_BACFR
RRNA ADENINE N-6-
BACTEROIDES PRAGILIS
16-43



METHYLTRANSPERASE


PMLSB_ECOLI
RRNA ADENINE N-6-
ESCHERICHIA COLI
4-81
120-154



METHYLTRANSFERASE


PMLSB_STRPN
RRNA ADENINE N-6-
STREPTOCOCCUS PNEUMONIAE
4-81
120-154



METHYLTRANSPERASE


PMLSB_STRSA
RRNA ADENINE N-6-
STREPTOCOCCUS SANGUIS
4-81
120-154



METHYLTRANSFERASE


PMLSC_BACFR
RRNA ADENINE N-6-
BACTEROIDES PRAGILIS
16-43



METHYLTRANSPERASE


PMMOB_METC
METHANE MONOOXYGENASE
METHYLOCOCCUS CAPSULATUS
34-64



REG PROTEIN II


PMOAB_ECOLI
MOLYBD COFAC BIOSYN PROTEIN B
ESCHERXCHIA COLI
49-76


PMOBA_THIFE
MOBA PROTEIN
THIO BACILLUS FERROOXIDANS
94-121
251-278


PMOBC_THIFE
MOBC PROTEIN
THIO BACILLUS FERROOXIDANS
20-47


PMOBD_THIFE
MOBD PROTEIN
THIO BACILLUS FERROOXIDANS
95-132


PMOB_ECOLI
MOB PROTEIN
ESCHERICHIA COLI
45-72


PMOEA_ECOLI
MOLYBDOPTERIN BIOSYNTHESIS
ESCHERICHIA COLI
243-270



MOEA PROTEIN


PMOP1_CLOPA
MOLYBDENUM-PTERIN BINDING
CLOSTRIDIUM PASTEURIANUM
26-53



PROTEIN I


PMOP2_CLOPA
MOLYDDENUM-PTERIN BINDING
CLOSTRIDIUM PASTEURIANUM
26-64



PROTEIN II


PMOXY_PARDE
METHANOL UTIL CONT PROTEIN MOXY
PARACOCCUS DENITRIFICANS
200-234
307-334


PMPEU_SYNPY
BILIN BIOSYNTHESIS PROTEIN MPEU
SYNECHOCOCCUS SP
2-36
80-107
198-225


PMPEV_SYNPY
BILIN BIOSYNTHESIS PROTEIN MPEV
SYNECHOCOCCUS SP
2-31
175-216


PMPRA_ECOLI
MPRA PROTEIN
ESCHERICHIA COLI
136-163


PMRAY_BACSU
PENTAPEPTIDE-TRANSPERASE
BACILLUS SUBTILIS
106-133
247-281


PMREB_BACCE
ROD SHAPE-DETERMINING
BACILLUS CEREUS
186-213



PROTEIN MREB


PMREC_BACSU
ROD SHAPE-DETERMINING
BACILLUS SUBTILIS
65-112



PROTEIN MREC


PMRKB_KLEPN
CHAPERONE PROTEIN MRXB PRECURSORS
KLEBSIELLA PNEUMONIAE
198-232


PMRKC_KLEPN
MRKC PROTEIN PRECURSOR
KLEBSIELLA PNEUMONIAE
55-82
452-489
592-622


PMRKD_KLEPN
FIMBRIA ADHESIN PROTEIN PRESURSOR
KLEBSIELLA PNEUMONIAE
222-268


PMRKD_KLEPN
MRKE PROTEIN
KLEBSIELLA PNEUMONIAE
193-220


PMRP4_STRPY
FIBRIOGEN-/IG-BINDING PROTEIN
STREPTOCOCCUS PYOGENES
7-46
99-310



PRECURSOR


PMRP_STRSU
MURAMIDASE-RELEASED PROTEIN
STREPTOCOCCUS SUIS
75-102
130-177
261-291
421-448
507-534
588-622
773-800
1058-



PRECURSOR








1085


PMSBA_ECOLI
PROB ATP-BINDING TRANSPORT
ESCHERICHIA COLI
116-150
412-449



MSBA


PMSRA_STAEP
ERYTHROMYCIN RESISTANCE PROTEIN
STAPHYLOCOCCUS EPIDERMIDIS
174-223
323-350


PMSYB_ECOLI
ACIDIC PROTEIN MSYB
ESCHERICHIA COLI
73-100


PMT57_ECOLI
MODIFICATION METHYLASE ECO571
ESCHERICHIA COLI
250-284
474-544


PMTAI_ACICA
MODIFICATION METHYLASE ACCI
ACINETOBACTER CALCOACETICUS
503-540


PMTAB_SYNP2
MODIFICATION METHYLASE AQUI
SYNECHOCOCCUS SP
19-46



BETA SUBUNIT


PMTBI_BREBP
MODIFICATION METHYLASE BEPI
BREVIBACTERIUM EPIDERMIDIS
166-200
309-336


PMTBI_HERAU
MODIFICATION METHYLASE HGIBI
HERPETOSIPNON AURANTIACUS
281-308


PMTB2_BACAM
MODIFICATION METHYLASE BAMHI
BACILLUS AMYLOLIQUEFACIENS
35-62


PMTB3_BACAR
MODIFICATION METHYLASE BAMHI
BACILLUS ANEURINOLYTICUS
184-211


PMTBA_BACAR
MODIFICATION METHYLASE BANI
BACILLUS ANEURINOLYTICUS
121-148
382-409


PMTBB_BACSU
MODIFICATION METHYLASE BSUBI
BACILLUS SUBTILIS
231-258
467-496


PMTBF_BACSU
MODIFICATION METHYLASE BSUFI
BACILLUS SUBTILIS
208-235


PMTC1_CITFR
MODIFICATION METHYLASE CFRBI
CITROBACTER FREUNDII
2-36
55-82
252-279


PMTC1_HERAU
MODIFICATION METHYLASE HGICI
HERPETOSIPHON AURANTIACUS
120-147


PMTC2_HEEAU
MODIFICATION METHYLASE HGICII
HERPETOSIPHON AURANTIACUS
281-311


PMTE1_ECOLI
MODIFICATION METHYLASE ECORI
ESCHERICHIA COLI
76-110
145-172


PMTE1_HERAU
MODIFICATION METHYLASE HGIEI
HERPETOSIPHON AURANTIACUS
281-308


PMTE2_ECOLI
MODIFICATION METHYLASE ECORII
ESCHERICHIA COLI
4-61


PMTE5_ECOLI
MODIFICATION METHYLASE ECO RV
ESCHERICHIA COLI
73-100


PMTEC_ENTCL
MODIFICATION METHYLASE ECAI
ENTEROBACTER CLOACAE
418-445


PMTF1_FLAOK
MODIFICATION METHYLASE FOKI
FLAVOBACTERIUM OKEANOKOITES
184-211
279-306
337-366
398-425
555-646


PMTF1_FUSNU
MODIFICATION METHYLASE FNUDI
FUSOBACTERIUM NUCLEATUM
22-49


PMTG2_HAEGA
MODIFICATION METHYLASE HGAI-2
HAEMOPHILUS GALLINARUM
135-165


PMTH2_HAEIN
MODIFICATION METHYLASE HINCII
HAEMOPHILUS INFLUENZAE
181-208
399-426


PMTHZ_METTF
MODIFICATION METHYLASE MTHZI
METHANOBACTERIUM THERMOFORMICICUM
188-215
296-323


PMTKI_KLEPN
MODIFICATION METHYLASE KPNI
KLEBSIELLA PHEUMONIAB
270-297


PMTLD_STRMU
MANNITOL-I-PHOSPHATE
STREPTOCOCCUS MUTANS
39-66
224-258
349-376



5-DEHYDROGENASE


PMTMI_MORSP
MODIFICATION METHYLASE MSPI
MORAXELLA SP
5-39
49-104


PMTN3_NEILA
MODIFICATION METHYLASE NLAIII
NEISSERIA LACTAMICA
124-158
183-210


PMTP2_PROVU
MODIFICATION METHYLASE PVUII
PROTEUS VULGARIS
308-335


PMTPG_SULAC
MEMBRANE-ASSOCIATED ATPASE
SULFOLOBUS ACIDOCALDARIUS
9-67


PMTPS_PROST
MODIFICATION METHYLASE PSTI
PROVIDENCIA STUARTII
226-264


PMTR_ECOLI
TRYPTOPHAN-SPECIFIC TRANSPORT
ESCHERICHIA COLI
80-107



PROTEIN


PMTSI_STRSA
MODIFICATION METHYLASE STSI
STREPTOCOCCUS SANGUIS
116-153
434-461
600-645


PMTS2_SHISO
MODIFICATION METHYLASE SSOII
SHIGELLA SONNEI
81-108


PMTS9_STAAU
MODIFICATION METHYLASE SAU961
STAPHYLOCOCCUS AUREUS
233-274


PMTSA_LACLC
MODIFICATION METHYLASE SCRFI-A
LACTOCOCCUS LACTIS
88-115
187-214


PMTSB_LACLC
MODIFICATION METHYLASE SCRFI-B
LACTOCOCCUS LACTIS
27-61


PMTSI_SPISQ
CPG DNA METHYLASE
SPIROPLASMA SP
188-230
256-290


PMTSM_SERMA
MODIFICATION METHYLASE SMAI
SERRATIA MARCESCENS
61-88


PMTTS_THETH
MODIFICATION METHYLASE TTHHBII
THERMUS AQUATICUS
120-157


PMTVI_VIBS3
MODIFICATION METHYLASE VSPI
VIBR1O SP
23-66


PMUKB_ECOLI
MUKB PROTEIN
ESCHERICHIA COLI
320-381
1014-
1216-






1048
1252


PMULI_ERWAM
MAJOR OUTER MEMBRANE
ERWINIA AMYLOVORA
24-54



LIPOPROTEIN PREC


PMULI_MORMO
MAJOR OUTER MEMBRANE
MORGANELA MORGANII
27-54



LIPOPROTEIN PREC


PMULI_PROMI
MAJOR OUTER MEMBRANE
PROTEUS MIRABILIS
21-63



LIPOPROTEIN PREC


PMURD_BACSU
UDP-LIGASE
BACILLUS SUBTILIS
101-132
299-326


PMURE_ECOLI
LIGASE
ESCHERICHIA COLI
107-134


PMURF_ECOLI
UDP-MURNAC-PENTAPEPTIDE
ESCHERICHIA COLI
407-437



SYNTHETASE


PMURZ_ECOLI
ENOYLPYRUVATE TRANSFERASE
ESCHERICHIA COLI
392-419


PMURZ_ENTCL
ENOYLPYRUVATE TRANSFERASE
ENTEROBACTER CLOACAE
392-419


PMUTA_STRCM
METMYLMALONYL-COA MUTASE
STREPTOMYCES CINNAMONENSIS
31-58



BETA-SUBNIT


PMUTB_PROFR
METHYLMALONYL-COA MUTASE
PROPIONIBACTERIUM
549-576



ALPHA-SUBUNIT
FREUDENREICHII


PMUTB_SALTY
/G-SPECIFIC ADENINE GLYCOSYLASE
SALMONELLA TYPHIMURIUM
273-300


PMUTB_STRCM
METHYLMALONYL-COA MUTASE
STREPTOMYCES CINNAMONENSIS
481-508



ALPHA-SUBUNIT


PMUTL_ECOLI
DNA MISMATCH REPAIR PROTEIN MUTL
ESCHERICHIA COLI
80-114


PMUTL_SALTY
DNA MISMATCH REPAIR PROTEIN MUTL
SALMONELLA TYPHIMURIUM
80-114


PMUTL_VIBCH
PROTEIN MUTL
VIBRIO CHOLERAE
134-169


PMUTS_ECOLI
DNA MISMATCH REPAIR PROTEIN
ESCHERICHIA COLI
119-153



MUTS


PMUTT_STRAM
MUTT-LIKE PROTEIN
STREPTOMYCES AMBOFACIENS
60-87


PMVAA_PSEMV
COENZYME A REDUCTASE
PSEUDOMONAS MEVALONII
341-368


PMX_STRPY
M-RELATED PROTEIN PRECURSOR
STREPTOCOCCUS PYOGENES
5-129
148-182
190-217
240-301


PMYCO_STRCI
MYCOLYSIN PRECURSOR
STREPTOMYCES CACAOI
300-352


PMYFC_YEREN
MYFC PROTEIN PRECURSOR
YERSINIA ENTEROCOLITICA
210-237


PNADC_SALTY
NICOTINATE-NUCLEOTIDE
SALMONELLA TYPHIMURIUM
123-154
255-289



PYROPHOSPHORYLASE


PNADR_SALTY
TRANSCRIPTIONAL REGULATOR NADR
SALMONELLA TYPHIMURIUM
233-260


PNAGD_ECOLI
NAGD PROTEIN
ESCHERICHIA COLI
75-102


PNAGH_CLOPE
HYALURONOGLUCOSAMINIDASE
CLOSTRIDIUM PERFRINGENS
48-75
990-1017


PNAGR_ECOLI
NAGR PROTEIN
ESCHERICHIA COLI
119-153


PNANH_CLOSE
SIALIDASE PRECURSOR
CLOSTRIDIUM SEPTICUM
11-42
289-330
922-988


PNANH_CLOSO
SIALIDASE PRECURSOR
CLOSTRIDIUM SORDELLI
377-404


PNANH_SALTY
SIALIDASE
SALMONELLA TYPHIMURIUM
290-317


PNAPA_ENTHR
NA(+)/H(+) ANTIPORTER
ENTEROCOCCUS HIRAE
116-150


PNARG_ECOLI
RESPIRATORY NITRATE REDUCTASE
ESCHERICHIA COLI
386-420



ALPHA CHAIN


PNARL_ECOLI
REGULATOR PROTEIN NARL
ESCHERICHIA COLI
76-103


PNARP_ECOLI
REGULATOR PROTEIN NARP
ESCHERICHIA COLE
155-189


PNARX_ECOLI
NITRATE/NITRITE SENSOR
ESCHERICHIA COLI
220-247
358-385
431-458
505-538



PROTEIN NARX


PNDVA_RHIME
BETA-(I->2)GLUCAN EXPORT PROTEIN
RHIZOBIUM MELILOTI
212-239


PNEOR_STRCY
NEOMYCIN RESISTANCE PROTEIN
STREPTOMYCES CYANOGENUS
348-375


PNEUA_ECOLI
ACYLNEURAMINATE
ESCHERICHIA COLI
218-252
268-298



CYTIDYLYLTRANSPERASE


PNFRA_ECOLI
N4 ADSORPTION PROTEIN A PRECURSOR
ESCHERICHIA COLI
490-517


PNFRB_ECOLI
N4 ADSORPTION PROTEIN B
ESCHERICHIA COLI
2-43
186-220
511-538


PNFRC_ECOLI
N4 ADSORPTION PROTEIN C
ESCHERICHIA COLI
315-342


PNFSI_ENTCL
NAD(P)H NITROREDUCTASE
ENTEROBACTER CLOACAE
9-36


PNNAA_ECOLI
NA(+)/H(+) ANTIPORTER 1
ESCHERICHIA COLI
206-233


PNHAB_ECOLI
NA(+)/H(+) ANTIPORTER 2
ESCHERICHIA COLI
271-305


PNHAB_PSECL
NITRILE HYDRATASE SUBUNIT BETA
PSEUDOMONAS CHLORORAPHIS
71-101


PNHBI_RHORH
NITRILE HYDRATASE SUBUNIT BETA
RHODOCOCCUS RHODOCHROUS
63-93


PNIFA_AZOBR
NIF-SPECIFIC REGULATORY PROTEIN
AZOSPIRILLUM BRASILENSE
7-44


PNIFA_BRAJA
NIF-SPECIFIC REGULATORY PROTEIN
BRADYRHIZOBIUM JAPONICUM
252-279


PNIFA_HERSE
NIF-SPECIFIC REGULATORY PROTEIN
HERBASPIRILLUM SEROPEDICAI
9-51
162-203
327-354


PNIFA_RHIME
NIF-SPECIPIC REGULATORY PROTEIN
RHIZOBIUM LEGUMINOSARUM
100-127


PNIFA_RHIME
NIF-SPECIFIC REGULATORY PROTEIN
RHIZOBIUM MELILOTI
171-198


PNIFA_RHOCA
NIF-SPECIFIC REGULATORY PROTEIN
RHODOBACTER CAPSULATUS
260-287


PNIFB_AZOVI
NIFB PROTEIN
AZOTOBACTER VINELANDII
342-369


PNIFB_KLEPN
NIFB PROTEIN
KLEBSIELLA PNEUMONIAE
154-181


PNIFD_ANASP
NITROG MOLYBD-IRON PROTEIN
ANABAENA SP
374-401


PNIFD_AZOBR
NITROG MOLYBD-IRON PROTEIN
AZOSPIRILLUM BRASILENSE
377-404


PNIFD_PLEBO
NITROG MOLYRD-IRON PROTEIN
PLECTONEMA BORYANUM
387-414


PNIFD_THIFE
NITROG MOLYRD-IRON PROTEIN
THIO BACILLUS FERROOXIDANS
383-410


PNIFE_CLPOA
BIOSYNTHESIS PROTEIN NIFE
CLOSTRIDIUM PASTEURIANUM
359-386


PNIFH_FRASR
NITROGENASE IRON PROTEIN
FRANKIA SP
56-83


PNIFH_PLEBO
NITROGENASE IRON PROTEIN
PLECTONEMA BORYANUM
267-294


PNIFK_AZOBR
NITROG MOLYBD-IRON PROTEIN
AZOSPIRILLUM BRASILENSE
430-457


PNIFK_BRASA
NITROG MOLYBD-IRON PROTEIN
BRADYRHIZOBIUM JAPONICUM
483-510


PNTFK_BRASP
NITROG MOLYBO-IRON PROTEIN
BRADYRHIZOBIUM SP
478-506


PNIPK_CLOPA
NITROG MOLYBO-IRON PROTEIN
CLOSTRIDIUM PASTEURIANUM
227-254


PNIFK_THIFE
NITROG MOLYOD-IRON PROTEIN
THIO BACILLUS FERROOXIDANS
479-590


PNIFM_AZOCH
NIFM PROTEIN
AZOTOBACTER CHROOCOCCUM MCD I
265-292


PNIFN_BRAJA
BIOSYNTHESIS PROTEIN NIFN
BRADYRHIZOBIUM JAPONICUM
339-366


PNIFS_ANASP
NIFS PROTEIN
ANABAENA SP
112-139


PNIFS_LACDE
NIFS PROTEIN HOMOLOG
LACTOBACILLUS DELBRUECKII
59-86


PNIFT_AZOVI
NIFT PROTEIN
AZOTOBACTER VINELANDII
6-33


PNIFU_ANASL
NIFU PROTEIN
ANABAENA SP
7-49


PNIFU_ANASP
NIFU PROTEIN
ANABAENA SP
148-178


PNIFU_KLEPN
NIFU PROTEIN
KLEBSIELLA PNEUMONIAE
66-93


PNIKA_ECOLI
NICKEL TRANSPORT PROTEIN NIKA
ESCHERICHIA COLI
122-149
282-309
456-483



PRECURSOR


PNIKE_ECOLI
NICKEL TRANSPORT PROTEIN NIKE
ESCHERICHIA COLI
177-204


PNIRB_ECOLI
NITRITE REDUCTASE
ESCHERICHIA COLI
54-81
345-372


PNIRC_ECOLI
NIRC PROTEIN
ESCHERICHIA COLI
212-239


PNIRS_PSEST
PSEUDOMONAS CYTOCHROME
PSEUDOMONAS STUTZERI
303-333



OXIDASE PRECURS


PNISB_LACLA
117 KD MEMBRANE ASSOCIATED PROTEIN
LACTOCOCCUS LACTIS
202-229
287-332
663-697
886-920


PNISC_LACLA
NISIN BIOSYNTHESIS PROTEIN NISC
LACTOCOCCUS LACTIS
52-92
140-188


PNIST_LACLA
NISIN TRANSPORT PROTEIN NIST
LACTOCOCCUS LACTIS
223-257
278-305
426-470


PNIVA_CLOPA
HOMOCITRATE SYNTHASE,
CLOSTRIDIUM PASTEURIANUM
100-127
234-268



ALPHA SUBUNIT


PNIVO_CLOPA
HOMOCITRATE SYNTHASE.
CLOSTRIDIUM PASTEURIANUM
63-94
103-132
213-240
283-310



OMEGA SUBUNIT


PNMPC_ECOLI
PORON PROTEIN NMPC PRECURSOR
ESCHERICHIA COLI
22-49
69-96
335-362


PNODC_BRASP
NODULATION PROTEIN C
BRADYRHIZOBIUM SP
3-30


PNODC_RHILO
NODULATION PROTEIN C
RHIZOBIUM LOTI
286-313


PNODC_RHILT
NODULATION PROTEIN C
RHIZOBIUM LEGUMINOSARUM
14-48


PNODF_RHILV
NODULATION PROTEIN F
RHIZOBIUM LEGUMINOSARUM
31-58


PNODP_RHIMS
NODULATION PROTEIN F
RHIZOBIUM MELILOTI
39-66


PNODG_RHIME
NODULATION PROTEIN G
RHIZOBIUM MELILOTI
8-35


PNODG_RHIMS
NODULATION PROTEIN G
RHIZOBIUM MELILOTI
8-35


PNODL_RHILV
NODULATION PROTEIN L
RHIZOBIUM LEGUMINOSARUM
26-53


PNODQ_AZOBR
NODULATION PROTEIN Q
AZOSPIRILLUM BRASILENSE
60-87


PNODT_RHILT
NODULATION PROTEIN T
RHIZOBIUM LEGUMINOSARUM
104-134
355-382
420-454


PNODT_RHILV
NODULATION PROTEIN T
RHIZOBIUM LEGUMINOSARUM
364-391
416-443


PNODU_RHIFR
NODULATION PROTEIN U
RHIZOBIUM FREDII
506-536


PNODV_BRAJA
NODULATION PROTEIN V
BRADYRHIZOBIUM JAPONICUM
378-419
739-766


PNODX_RHILV
NODULATION PROTEIN X
RHIZOBIUM LEGUMINOSARUM
232-259


PNOLB_RHIFR
NODULATION PROTEIN NOLB
RHIZOBIUM FREDII
133-160


PNOLR_RHIME
NODULATION PROTEIN NOLR
RHIZOBIUM MELILOTI
88-115


PNOSD_PSEST
NOSD PROTEIN PRECURSOR
PSEUDOMONAS STUTZERI
319-346


PNOSR_PSEST
REGULATORY PROTEIN NOSR
PSEUDOMONAS STUTZERI
127-154


PNOSZ_PSEAE
NITROUS-OXIDE REDUCTASE PRECURSOR
PSEUDOMONAS AERUGINOSA
267-294


PNOSZ_PSEST
NITROUS-OXIDE REDUCTASE PRECURSOR
PSEUDOMONAS STUTZERI
557-591


PNPRE_BACAM
BACILLOLYSIN PRECURSOR
BACILLUS AMYLOLIQUEFACIENS
113-147
217-244


PNPRE_BACPO
BACILLOLYSIN PRECURSOR
BACILLUS POLYMYXA
57-91
187-228


PNPRE_BACSU
BACILLOLYSIN PRECURSOR
BACILLUS SUBTILIS
116-146
307-334


PNQO5_PARDE
NADH-UBIQUINONE OXIDOREDUCTASE
PARACOCCUS DENITRIFICANS
4-45



21 KD CHAIN


PNQO9_PARDE
NADH-UBIQUINONE OXIDOREDUCTASE
PARACOCCUS DENITRIFICANS
125-152



20 KD CHAIN


PNRDD_ECOLI
ANAER RIBONUC-TRIPHOS REDUCTASE
ESCHERICHIA COLI
91-125


PNRFA_ECOLI
CYTOCHROME C552 PRECURSOR
ESCHERICHIA COLI
319-346


PNRFG_ECOLI
NRFG PROTEIN
ESCHERICHIA COLI
72-111


PNRLI_RHORH
ALIPHATIC NITRILASE
RHODOCOCCUS RHODOCHROUS
109-136


PNSR_LACLA
NISIN-RESISTANCE PROTEIN
LACTOCOCCUS LACTIS
52-79
135-162


PNTCA_ANASP
DNA-BINDING PROTEIN VF1
ANABAENA SP
65-92


PNTCA_SYNP7
GLOBAL NITROGEN REGULATOR
SYNECHOCOCCUS SP
44-91


PNTCA_SYNY3
GLOBAL NITROGEN REGULATOR
SYNECHOCYSTIS Sr
67-94


PNTRB_VIBAL
NITROGEN REGULATION PROTEIN
VIBRIO ALGINOLYTICUS
194-223


PNTRC_PROVU
NITROGEN REGULATION PROTEIN
PROTEUS VULGARIS
385-412


PNTRC_RHIME
NITROGEN ASSIMILATION REGULATORY
RHIZOBIUM MELILOTI
451-478



PROTEIN


PNU2C_SYNP7
NADH-PLASTOQUINONE
SYNECHOCOCCUS SP
80-107



OXIDOREDUCTASE CHAIN


PNU4C_SYNY3
NADH-PLASTOQUINONE
SYNECHOCYSTIS SP
27-54



OXIDOREDUCTASE CHAIN


PNUSC_SYNP2
NADH-PLASTOQUINONE
SYNECHOCOCCUS SP
614-641



OXIDOREDUCTASE CHAIN


PNUJC_SYNY3
PROB NADH-UBIQUINONE
SYNECHOCYSTIS SP
163-190



OXIDOREDUCTASE SUBU


PNUKC_SYNY3
PROB NADH-UBIQUINONE
SYNECHOCYSTIS SP
169-199



OXIDOREDUCTASE SUBU


PNULX_SYNY3
NADH-PLASTOQUINONE
SYNECHOCYSTIS SP
46-80



OXIDOREDUCTASE CHAIN


PNUOG_ECOLI
NADH DEHYDROGENASE I CHAIN G
ESCHERICHIA COLI
368-402


PNUOL_ECOLI
NADH DEHYDROGENASE I CHAIN L
ESCHERICHIA COLI
30-57
496-523


PNUON_ECOLI
NADH DEHYDROGENASE I CHAIN N
ESCHERICHIA COLI
392-419


PNUPC_ECOLI
NUCLEOTIDE PERMEASE
ESCHERICHIA COLI
13-43
134-164
356-383


PNUSA_ECOLI
NUSA PROTEIN
ESCHERICHIA COLI
21-62


PNUSB_ECOLI
NUTILIZATION SUBSTANCE
ESCHERICHIA COLI
17-65
70-97



PROTEIN B


PNUSG_ECOLI
TRANSCRIPTION ANTITERMINATION
ESCHERICHIA COLI
141-168



PROTEIN NUS


PNUSG_THEMA
TRANSCRIPTION ANTITERMINATION
THERMOTOGA MARITIMA
203-230



PROTEIN NUS


PNYLB_FLASP
6-AMINOHEXANOATE-DIMER HYDROLASE
FLAVOBACTERIUM SP
223-250


PNYLC_FLASP
6-AMINOHEXANOATE-DIMER HYDROLASE
FLAVOBACTERIUNI SP
223-250


PO16G_BACCE
OLIGO-1,6-GLUCOSIDASE
BACILLUS CEREUS
301-328


POCCT_AGRT6
OCTOPINE-BINDING PROTEIN
AGROBACTERIUM TUMEFACIENS
172-202



T PRECURSOR


PODO1_AZOVI
2-OXOGLUTARATE DEHYDROGENASE
AZOTOBACTER VINELANDII
829-856



E1 COMPONE


PODO1_BACSU
2-OXOGLUTARATE DEHYDROGENASE
BACILLUS SUBTILIS
487-524
809-850



E1 COMPONE


PODO1_ECOLI
2-OXOGLUTARATE DEHYDROGENASE
ESCHERICHIA COLI
6-33



E1 COMPOSE


PODO2_BACSU
DIHYDROLIPOAMIDE SUC-TRANSF
BACILLUS SUBTILIS
30-60



COMP


PODOB_PSEPU
2-OXOGLUTARATE DEHYDROGENASE
PSEUDOMONAS PUTIDA
223-254



E1 COMPONE


POMP1_ECOLI
PYRUVATE DEHYDROGENASE E1
ESCHERICHIA COLI
624-651



COMPONENT


PODP2_AZOVI
DIHYDROLIPOAMIDE ACETRANS COMP
AZOTOBACTER VINELANDII
518-545


POMP2_ECOLI
PYRUVATE DEHYDROGENASE
ESCHERICHIA COLI
14-41
117-144


PODPA_BACST
PYRUVATE DEHYDROGENASE E1
BACILLUS STEAROTHERMOPHILUS
299-333



COMPANY


PODPA_BACSU
PYRUVATE DEHYDROGENASE E1
BACILLUS SUBTILIS
305-332



COMPANY


PODPB_BACST
PYRUVATE DEHYDROGENASE E1
BACILLUS STEAROTHERMOPHILUS
23-50



COMPANY


PODPB_BACSU
PYRUVATE DEHYDROGENASE E1
BACILLUS SUBTILIS
16-50



COMPANY


POMIE_CHLTR
15 KD CYSTEINE-RICH PROTEIN,
CHLAMYDIA TRACHOMATIS
38-65



SEROVAR E


POMA1_NEIGO
OUTER MEMBRANE PROTEIN
NEISSERIA GONORRHOEAE
63-90



PI.A PRECUSOR


POMA1_NEIME
OUTER MEMBRANE PROTEIN
NEISSERIA MENINGITIDIS
359-386



PI.A PRECUSOR


POMA2_NEIME
OUTER MEMBRANE PROTEIN
NEISSERIA MENINGITIDIS
353-380



PI.A PRECUSOR


POMB1_NEIGO
OUTER MEMBRANE PROTEIN
NEISSERIA GONORRHOEAE
63-90



P.IB PREC SOR


POMB1_NEIME
OUTER MEMBRANE PROTEIN
NEISSERIA MENINGITIDIS
63-90



P.IB PRECUESOR


POMB2_NEIGO
OUTER MEMBRANE PROTEIN
NEISSERIA GONORRHOEAE
63-90



P.IB PRECURSOR


POMB2_NEIME
OUTER MEMBRANE PROTEIN
NEISSERIA MENINGITIDIS
63-90



P.IB PRECURSOR


POMB3_NEIME
OUTER MEMBRANE PROTEIN
NEISSERIA MENINGITIDIS
63-90



P.IB PRECURSOR


POMB4_NEIME
OUTER MEMBRANE PROTEIN
NEISSERIA MENINGITIDIS
24-51
63-90



P.IB PRECURSOR


POMB_NEILA
OUTER MEMBRANE PROTEIN
NEISSERIA LACTAMICA
116-143



P.IB PRECURSOR


POMB_NEISI
OUTER MEMBRANE PROTEIN
NEISSERIA SICCA
24-51
63-90



P.IB PRECURSOR


POMLA_ACTPL
OUTER MEMBRANE LIPOPROTEIN
ACTINO BACILLUS PLEUROPNEUMONIAE
114-151



PRECURSOR


POMP1_HAEIN
OUTER MEMBRANE PROTEIN P1
HAEMOPHILUS INTLUENZAE
154-184
303-330
341-368



PRECURSOR


POMP2_HAEIN
OUTER MEMBRANE PROTEIN P2
HAEMOPHILUS INFLUENZAE
16-71
220-254
326-353



PRECURSOR


POMP3_NEIGO
OUTER MEMBRANE PROTEIN P-111
NEISSERIA GONORRHOCAC
14-41



PRECURSOR


POMP7_STAAU
70 KD OUTER MEMBRANE PROTEIN
STAPHYLOCOCCUS AUREUS
53-80
88-115



PRECURSOR


POMPA_THEMA
OUTER MEMBRANE PROTEIN ALPHA
THERMOTOGA MARITIMA
100-138
151-178
183-249
255-292
301-328
351-385



PRECURSOR


POMPC_ECOLI
OUTER MEMBRANE PROTEIN C
ESCHERICHIA COLI
20-47
64-94



PRECURSOR


POMPC_NEIGO
OUTER MEMBRANE PROTEIN C
NEISSERIA GONORRHOEAE
89-123



PRECURSOR


POMPC_SALTI
OUTER MEMBRANE PROTEIN C
SALMONELLA TYPHI
166-193



PRECURSOR


POMPF_ECOLI
OUTER MEMBRANE PROTEIN F
ESCHERICHIA COLI
21-55
231-258



PRECURSOR


POMPH_PHOS9
OMPH PROTEIN
PHOTOBACTERIUM SP
292-319


POMPT_ECOLI
PROTEASE VII PRECURSOR
ESCHERICHIA COLI
37-64


POP65_NEIGO
OPACITY PROTEIN OPA65
NEISSERIA GONORRHOEAE
71-111


POP67_NEIGO
OPACITY PROTEIN OPA67
NEISSERIA GONORRHOEAE
72-109


POPAA_NEIGO
OPACITY PROTEIN OPA53
NEISSERIA GONORRHOEAE
71-123
140-167


POPAG_NEIGO
OPACITY PROTEIN OPA52
NEISSERIA GONORRHOEAE
80-107
140-167


POPAI_NEIGO
OPACITY PROTEIN OPA54
NEISSERIA GONORRHOEAE
80-107


POPAJ_NEIGO
OPACITY PROTEIN OPA58
NEISSERIA GONORRHOEAE
71-105


POPAK_NEIGO
OPACITY PROTEIN OPA57
NEISSERIA GONORRHOEAE
71-105


POPDA_ECOLI
OLIGOPEPTIDASE A
ESCHERICHIA COLI
147-174


POPDA_SALTY
OLIGOPEPTIDASE A
SALMONELLA TYPHIMURIUM
147-174


POPDE_PSEAE
TRANSCRIPTION FACTOR OPDE
PSEUDOMONAS AERUGINOSA
64-91


POPPA_ECOLI
OLIGOPEPTIDE-BINDING PROTEIN
ESCHERICHIA COLI
402-432



PRECURSOR


POPPB_SALTY
OLIGOPEPTIDE PERMEASE PROTEIN
SALMONELLA TYPHIMURIUM
265-299



OPPB


POPR1_NEIME
OPACITY-RELATED PROTEIN POPM1
NEISSERIA MENINGITIDIS
108-135


POPR3_NEIME
OPACITY-RELATED PROTEIN POPM3
NEISSERIA MENINGITIDIS
94-135


POSMC_ECOLI
OSMOTICALLY INDUCIBLE PROTEIN
ESCHERICHIA COLI
5-32



OSMC


POSPA_BORBU
OUTER SURFACE PROTEIN A
BORRELIA BURGDORFERI
63-100
112-139
157-204
223-271



PRECURSOR


POSPB_BORBU
OUTER SURFACE PROTEIN B
BORRELIA BURGDORFERI
113-259
262-296



PRECURSOR


POTC2_BACSU
ORNITHINE CARBAMOYLTRANSTERASE
BACILLUS SUBTILIS
188-215


POTCC_PSEAE
ORNITHINE CARBAMOYLTRANSTERASE
PSEUDOMONAS AERUGINOSA
17-44


POTCC_PSEPU
ORNITHINE CARBAMOYLTRANSTERASE
PSEUDOMONAS PUTIDA
3-33


POUTB_BACSU
SPORE OUTGROWTH FACTOR B
BACILLUS SUBTILIS
225-252


POUTO_ERWCA
LEADER PEPTIDASE
ERWINIA CAROTOVORA
189-216


PP18K_STRPA
18 KD PROTEIN IN FIMA 3′REGION
STREPTOCOCCUS PARASANGUIS
115-149


PP18K_STRSA
18 KD PROTEIN IN SSAB 3′REGION
STREPTOCOCCUS SANGUIS
10-37
114-148


PP1P_LACLC
PI-TYPE PROTEINASE PRECURSOR
LACTOCOCCUS LACTIS
107-155
904-950
1073-
1223-
1466-
1625-







1100
1250
1496
1655


PP29_MYCHR
PROTEIN P29
MYCOPLASMA HYORHINIS
5-56
101-160
202-246


PP2P_LACLA
PII-TYPE PROTEINASE PRECURSOR
LACTOCOCCUS LACTIS
107-155
904-950
1073-
1223-
1446-
1625-







1100
1250
1496
1655


PP2P_LACPA
PII-TYPE PROTEINASE PRECURSOR
LACTOBACILLUS PARACASEI
107-155
904-941
1073-
1223-
1446-
16258







1100
1250
1496
1655


PP30_ECOLI
P30 PROTEIN
ESCHERICHIA COLI
55-82


PP34_RICRI
PROTEIN P34
RICKETTSIA RICKETTSII
9-47
135-173


PP37_MYCHR
PROTEIN P37 PRECURSOR
MYCOPLASMA HYORHINIS
38-75


PP3P_LACLC
PIII-TYPE PROTEINASE PRECURSOR
LACTOCOCCUS LACTIS
107-155
904-950
1073-
1223-
1446-
1628-







1100
1250
1496
1655


PP47K_PSECL
47 KD PROTEIN
PSEUDOMONAS CHLORORAPHIS
288-315


PP54_ENTFC
P54 PROTEIN PRECURSOR
ENTEROCOCCUS FAECIUM
58-92
141-209


PP60_LISGR
PROTEIN P60 PRECURSOR
LISTERIA GRAYI
31-61
101-142
300-334
431-458


PP60_LISIN
PROTEIN P60 PRECURSOR
LISTERIA INNOCUA
67-94
102-143


PP60_LISIV
PROTEIN P60 PRECURSOR
LISTERIA IVANOVII
101-140
315-359


PP60_LISMO
PROTEIN P60 PRECURSOR
LISTERIA MONOCYTOGENES
103-144


PP60_LISSE
PROTEIN P60 PRECURSOR
LISTERIA SEELIGERI
101-140
270-298
321-365
395-422


PP60_LISWE
PROTEIN P60 PRECURSOR
LISTERIA WELSHIMERI
113-140
317-361
396-423


PP69_MYCHR
PROTEIN P69
MYCOPLASMA HYORHINIS
264-295
421-464
487-517
544-575


PPABA_BACSU
ADC SYNTHASE
BACILLUS SUBTILIS
12-41


PPABC_BACSU
4-AMINO-4-
BACILLUS SUBTILIS
250-277



DEOXYCHORISMATE LYASE


PPABC_ECOLI
4-AMINO-4-
ESCHERICHIA COLI
140-167



DEOXYCHRISMATE LYASE


PPABL_STRGR
PROTEIN Y
STREPTOMYCES GRISEUS
52-79


PPAC_ARTVI
PENICILLIN ACYLASE PRECURSOR
ARTHROBACTER VISCOSUS
170-197
333-363
571-606
640-674


PPAC_BACSH
PENICILLIN ACYLASE
BACILLUS SPHAERICUS
232-259


PPAC_STRMU
PAC PROTEIN PRECURSOR
STREPTOCOCCUS MUTANS
146-276
281-465
538-565
576-630
1075-
1159-
1381-









1102
1186
1434


PPAI1_BACSU
REGULATORY PROTEIN PAI 1
BACILLUS SUBTILIS
103-137


PPAI2_BACSU
REGULATORY PROTEIN PAI 2
BACILLUS SUBTILIS
145-172


PPAPE_ECOLI
FIMBRIAL PROTEIN PAPE
ESCHERICHIA COLI
42-69
86-123


PPAPF_ECOLI
MINOR FIMBRIAL PROTEIN PAPF
ESCHERICHIA COLI
4-31


PPAPG_ECOLI
FIMBRIAL PROTEIN PAPG
ESCHERICHIA COLI
282-316



PRECURSOR


PPARA_AGRTU
PARA PROTEIN
AGROBACTERIUM TUMEFACIENS
60-87


PPARB_ECOLI
PLASMID PARTITION PAR B PROTEIN
ESCHERICHIA COLI
117-154
249-283


PPARE_ECOLI
TOPOISOMERASE IV SUBUNIT B
ESCHEIUCHIA COLI
444-471
526-553


PPARE_SALTY
TOPOISOMERASE IV SUBUNIT B
SALMONELLA TYPHIMURIUM
444-471
526-553


PPA_BACAR
PROTECTIVE ANTIGEN PRECURSOR
BACILLUS ANTHRACIS
13-52
125-152
296-335
585-615
650-684


PPBP2_ECOLI
PENICILLIN-BINDING PROTEIN 2
ESCHERICHIA COLI
95-122
178-205
207-241


PPBP2_NEIGO
PENICILLIN-BINDING PROTEIN 2
NEISSERIA GONORRHOEAE
193-220


PPBP2_NEIME
PENICILLIN-BINDING PROTEIN 2
NEISSERIA MENINGITIDIS
193-220


PPBP2_STRPN
PENICILLIN-BINDING PROTEIN 2B
STREPTOCOCCUS PNEUMONIAE
144-183
216-243
259-286
605-632


PPBP3_ECOLI
PENICILLIN-BINDING PROTEIN 3 PRECURSOR
ESCIIERICHIA COLI
224-251
334-368


PPBP4_BACSU
PENICILLIN-BINDING PROTEIN 4*
BACILLUS SUBTILIS
374-401


PPBP4_ECOLI
PENICILLIN-BINDING PROTEIN 4
ESCHERICHIA COLI
336-363



PRECURSOR


PPBPA_ECOLI
PENICILLIN-BINDING PROTEIN 1A
ESCHERICHIA COLI
145-172


PPBPB_ECOLI
PENICILLIN-BINDING PROTEIN 1B
ESCHERICHIA COLI
62-96
263-290


PPBPX_STRPN
PENICILLIN-BINDING PROTEIN 2X
STREPTOCOCCUS PNEUMONIAE
89-116
706-733


PPCAB_STAAU
PENICILLIN-BINDING PROTEIN
STAPHYLOCOCCUS AUREUS
78-108
176-203
263-324
502-529


PPCAB_PSEPU
CYCLOISOMERASE
PSEUDOMONAS PUTIDA
115-142
226-253


PPEL3_ERWCA
PECTATE LYASE III PRECURSOR
ERWINIA CAROTOVORA
110-137


PPELA_ERWCA
PECTATE LYASE A PRECURSOR
ERWINIA CAROTOVORA
110-137


PPELB_ERWCA
PECTATE LYASE B PRECURSOR
ERWINIA CAROTOVORA
110-137


PPELC_ERWCA
PECTATE LYASE C PRECURSOR
ERWINIA CAROTOVORA
110-137


PPELF_ERWCH
PECTATE LYASE E PRECURSOR
ERWINIA CHRYSANTHEMI
40-67
209-243


PPELP_ERWCA
PERIPLASMIC PECTATE LYASE PRECURSOR
ERWINIA CAROTOVORA
455-482


PPELP_YERPS
PERIPLASMIC PECTATE LYASE PRECURSOR
YERSINIA PSEUDOTUBERCULOSIS
459-489


PPELX_ERWCA
PUTATIVE PECTATE LYASE X PRECURSOR
ERWINIA CAROTOVORA
188-218


PPELX_ERWCH
EXOPOLYGALACTURONATE LYASE PRECURSOR
ERWINIA CHRYSANTHEMI
466-493


PPEPD_ECOLI
AMINOACYL-HISTIDINE DIPEPTIDASE
ESCHERICHIA COLI
264-314


PPEPQ_ECOLI
X-PRO DIPEPTIDASE
ESCHEIUCHIA COLI
251-278


PPERT_BORER
PERTACTIN PRECURSOR
BORDETELLA BRONCHISEPTICA
617-644


PPERT_BORPA
PERTACTIN PRECURSOR
BORDETELLA PARAPERTUSSIS
628-655


PPERT_BORPE
PERTACTIN PRECURSOR
BORDETELLA PERTUSSIS
616-643


PPGK_CORGL
PHOSPHOGLYCERATE KINASE
CORYNEBACTERIUM GLUTMICUM
83-117


PPGK_ECOLI
PHOSPHOGLYCERATE KINASE
ESCHERICHIA COLI
186-216


PPGK_METER
PHOSPHOGLYCERATE KINASE
METHANOBACTERIUM BRYANTII
36-63


PPGK_THETH
PHOSPHOGLYCERATE KINASE
THERMUS AQUATICUS
222-249


PPGLI_ERWCA
ENDO-POLYOALACTURONASE
ERWINIA CAROTOVORA
237-271


PPGTE_SALTY
OUTER MEMBRANE PROTEASE
SALMONELLA TYPHIMURIUM
66-93


PPHA1_FREDI
C-PHYCOCYANIN-1 ALPHA CHAIN
FREMYELLA DIPLOSIPHON
21-48


PPHA2_FREDI
C-PHYCOCYANIN-2 ALPHA CHAIN
FREMYELLA DIPLOSIPHON
21-48


PPHAA_PSEOL
POLY(3-HYDROXYALKANOATE) POLYMERASE I
PSEUDOMONAS OLEOVORANS
264-291


PPHAB_ANACY
ALLOPHYCOCYANIN BETA CHAIN
ANABAENA CYLINDRICA
7-48


PPHAB_ANAVA
ALLOPHYCOCYANIN BETA CHAIN
ANABAENA VARIABILIS
14-48


PPHAB_FREDI
ALLOPHYCOCYANIN BETA CHAIN
FREMYELLA DIPLOSIPHON
8-49


PPHAB_MASLA
ALLOPHYCOCYANIN BETA CHAIN
MASTIGOCLADUS LAMINOSUS
14-41


PPHAB_SYNP6
ALLOPHYCOCYANIN BETA CHAIN
SYNECHOCOCCUS SP
14-41


PPHAC_SYNP6
ALLOPHYCOCYANIN ALPHA-B CHAIN
SYNECHOCOCUS SP
33-60


PPHAG_FREDI
ALLOPHYCOCYANIN GAMMA CHAIN
FREMYELLA DIPLOSIPHON
32-59


PPHB3_FREDI
C-PHYCOCYANIN-3 BETA CHAIN
FREMYELLA DIPLOSIPHON
29-56


PPHBB_ALCEU
ACETOACETYL-COA REDUCTASE
ALCALIGENES EUTROPHUS
55-85


PPHCA_SYNYI
C-PHYCOCYANIN ALPHA CHAIN
SYNECHOCYSTIS SP
21-55


PPHCB_SYNP6
C-PHYCOCYANIN BETA CHAIN
SYNECHOCOCCUS SP
28-55


PPHCB_SYNP7
C-PHYCOCYANIN BETA CHAIN
SYNECHOCOCCUS SP
28-55


PPHCB_SYNYI
C-PHYCOCYANIN BETA CHAIN
SYNECHOCYSTIS SP
21-55


PPHEA_ECOLI
CHORISMATE MUTASE
ESCHERICHIA COLI
10-37


PPHEA_ERWHE
CHORISMATE MUTASE
ERWINIA HERBICOLA
10-37
159-186
252-286


PPHEA_PSESP
PHENOL 2-MONOOXYGENASE
PSEUDOMONAS SP
171-201
282-314
437-464


PPHEB_MASLA
PHYCOERYTHROCYANIN BETA CHAIN
MASTIGOCLADUS LAMINOSUS
21-62


PPHEB_PSESP
CATECHOL 1,2-DIOXYGENASE
PSEUDOMONAS SP
24-51


PPHEG_SYNPY
LINKER POLYPEPTIDE
SYNECHOCOCCUS SP
158-185


PPHEP_ECOLI
PHENYLALANINE-SPECIFIC PERMEASE
ESCHERICHIA COLI
284-311


PPHFI_CLOPA
PERIPLASMIC (FE) HYDROGENASE I
CLOSTRIDIUM PASTEURIANUM
434-471


PPHLI_BACCE
SPHINGOMYELINASE C PRECURSOR
BACILLUS CEREUS
2-36


PPHL2_BACCE
SPHINGOMYELINASE C PRECURSOR
BACILLUS CEREUS
2-36


PPHL3_BACCE
SPHINGOMYELINASE C PRECURSOR
BACILLUS CEREUS
2-36


PPHLC_BACCE
PHOSPHOLIPASE C PRECURSOR
BACILLUS CEREUS
32-59
179-206


PPHLC_CLOBI
PHOSPHOLIPASE C PRECURSOR
CLOSTRIDIUM BIFERMENTANS
50-77
335-365


PPHLC_CLOPE
PHOSPHOLIPASE C PRECURSOR
CLOSTRIDIUM PERFRINGENS
210-237
369-398


PPHLC_LISMO
PHOSPHOLIPASE C PRECURSOR
LISTERIA MONOCYTOGENES
147-174


PPHLC_PSEAE
HEMOLYTIC PHOSPHOLIPASE C
PSEUDOMONAS AERUGINOSA
685-712



PRECURSOR


PPHLC_STAAU
PHOSPHOLIPASE C PRECURSOR
STAPHYLOCOCCUS AUREUS
6-33


PPHLD_BACCE
PHOSPHOLIPASE C PRECURSOR
BACILLUS CEREUS
179-206


PPHL_LEPIN
SPHINGOMYELINASE C PRECURSOR
LEPTOSPIRA INTERROGANS
30-57
394-428


PPHND_ECOLI
PHND PROTEIN
ESCHERICHIA COLI
296-326


PPHNK_ECOLI
PHNK PROTEIN
ESCHERICHIA COLI
178-205


PPHNM_ECOLI
PHNM PROTEIN
ESCHERICHIA COLI
5-35


PPHOE_CITFR
OUTER MEMBRANE PORE PROTEIN
CITROBACTER FREUNDII
13-40
47-105



E PRECURSOR


PPHOE_ECOLI
OUTER MEMBRANE PORE PROTEIN
ESCHERICHIA COLI
13-40
64-105
168-195
226-253



E PRECURSOR


PPHOE_KLEOX
OUTER MEMBRANE PORE PROTEIN
KLEBSIELLA OXYTOCA
13-40
64-91



E PRECURSOR


PPHOE_KLEPN
OUTER MEMBRANE PORE PROTEIN
KLIBSIELLA PNEUMONIAE
3-40
64-105



E PRECURSOR


PPHOE_SALTY
OUTER MEMBRANE PORE PROTEIN
SALMONELLA TYPHIMURIUM
63-104
320-347



E PRECURSOR


PPHOP_BACSU
ALK PHOS SYNTHESIS TRANS
BACILLUS SUBTILIS
185-219



REG PROTEIN


PPHOQ_ECOLI
SENSOR PROTEIN PHOQ
ESCHERICHIA COLI
244-278


PPHOQ_SALTY
VIRULENCE SENSOR PROTEIN PHOQ
SALMONELLA TYPHIMURIUM
226-260


PPHOR_BACSU
ALK PHOS SYNTHESIS SENSOR
BACILLUS SUBTILIS
89-145
387-425



PROTEIN PHOR


PPHRA_ECOLI
PHOTOREPAIR PROTEIN PHRA
ESCHERICHIA COLI
63-90
207-241


PPHRA_SYNPY
R-PHYCOCYANIN II ALPHA CHAIN
SYNECHOCOCCUS SP
20-47


PPHRA_SYNPZ
R-PHYCOCYANIN II ALPHA CHAIN
SYNECHOCOCCUS SP
20-47


PPHSG_ECOLI
GLYCOGEN PHOSPHORYLASE
ESCRERICHIA COLI
157-184
488-515


PPHSM_ECOLI
MALTODEXTRIN PHOSPHORYLASE
ESCHERICIIIA COLI
71-108


PPILA_NEIGO
PROD SIGNAL RECOGNITION
NEISSERIA GONORRHOEAE
17-68



PARTICLE PROTEIN


PPILB_PSEAE
FIMBRIAL ASSEMBLY PROTEIN PILB
PSEUDOMONAS AERUGINOSA
16-60


PPILC_PSEAE
PILC PROTEIN
PSEUDOMONAS AERUGINOSA
143-170


PPILD_NEIGO
LEADER PEPTIDASE
NEISSERIA GONORRHOEAE
110-137


PPILQ_PSEAE
FIMBRIAL ASSENIBLY PROTEIN
PSEUDOMONAS AERUGINOSA
71-115
639-666



PILQ PRECURSOR


PPILS_PSEAE
SENSOR PROTEIN PILS
PSEUDOMONAS AERUGINOSA
9-46


PPIR_ECOLI
P1 PROTEIN
ESCHERICHIA COLI
156-188


PPIV_MORBO
PILIN GENE INVERTING PROTEIN
MORAXELLA BOVIS
42-69
152-182


PPIV_MORLA
PILIN GENE INVERTING PROTEIN
MORAXELLA LACUNATA
152-182


PPLC_BACCE
PHOSPHODIESTERASE PRECURSOR
BACILLUS CEREUS
217-245


PPLC_BACTU
PHOSPHODIESTERASE PRECURSOR
BACILLUS THUIUNGIENSIS
216-245


PPLC_LISMO
PHOSPHODIESTERASE PRECURSOR
LISTERSA MONOCYTOGENES
238-265


PPLSC_ECOLI
ACYLTRANSFERASE
ESCHERICHIA COLI
106-133


PPLSX_ECOLI
PLSX PROTEIN
ESCHERICHIA COLI
241-270


PPLYD_ERWCA
PECTIN LYASE
ERWINIA CAROTOVORA
27-92


PPMBA_ECOLI
PMBA PROTEIN
ESCHERICHIA COLI
9-50


PPME_ERWCH
PECTINESTERASE PRECURSOR
ERWINIA CHRYSANTHEMI
60-87


PPMGY_ECOLI
PHOSPHOGLYCERATE MUTASE
ESCHERICHIA COLI
82-116


PPMGY_ZYMM
PHOSPHOGLYCERATE MUTASE
ZYMOMONAS MOBILIS
13-40
80-110


PPNP_ECOLI
POLYRIBONUC NUCLEOTIDYL
ESCHERICHIA COLI
260-294


PPNUC_SALTY
PNUC PROTEIN
SALMONELLA TYPHIMURIUM
178-205


PPODK_BACSY
PYRUVATE, ORTHOPHOSPHATE DIKINASE
BACTEROIDES SYMBIOSUS
51-78


PPORE_PSESY
OUTER MEMBRANE PORIN F PRECURSOR
PSEUDOMONAS SYRINGAE
111-138


PPORF_PSEAE
PORIN O PRECURSOR
PSEUDOMONAS AERUGINOSA
390-424


PPORP_PSEAE
PORIN P PRECURSOR
PSEUDOMONAS AERUGINOSA
139-181
260-287
369-396


PPOTD_ECOLI
BINDING PROTEIN PRECURSOR
ESCHERICHIA COLI
320-347


PPOTE_ECOLI
PUTRESCINE-ORNITHINE ANTIPORTER
ESCHERICHIA COLI
91-118


PPOXB_ECOLI
PYRUVATE DEHYDROGENASE
ESCHERICHIA COLI
8-38


PPPB3_BACSU
ALKALINE PHOSPHATASE III PRECURSOR
BACILLUS SUBTILIS
109-150
433-460


PPPB4_BACSU
ALKALINE PHOSPHATASE IV PRECURSOR
BACILLUS SUBTILIS
85-123
336-363


PPPB_ECOLI
ALKALINE PHOSPHATASE PRECURSOR
ESCHERICHIA COLI
235-262


PPPB_ESCRE
ALKALINE PHOSPHATASE PRECURSOR
ESCHERICHIA FERGUSONII
236-263


PPPCE_FLAME
PROLYL ENDOPEPTIDASE PRECURSOR
FLAVOBACTERIUM MENINGOSEPTICUM
158-199


PPPCF_FLAME
PROLYL ENDOPEPTIDASE PRECURSOR
FLAVOBACTERIUM MENINGOSEPTICUM
158-199
256-283


PPPCK_ECOLI
PHOSPHOENOLPYRUVATE
ESCHERICHIA COLI
45-72



CARBOXYKINASE


PPPDA_CLOPE
PROTEIN A PRECURSOR
CLOSTRIDIUM PERFRINGENS
73-107


PPPSA_ECOLI
PHOSPHOENOLYPYRUVATE SYNTHASE
ESCHERICHIA COLI
49-76


PPQQ2_ACICA
COENZYME PQQ SYNTHESIS PROTEIN
ACINETOBACTER CALCOACETICUS
40-74



II


PPRCA_ANAVA
CALCIUM DEPENDENT PROTEASE
ANABAENA VARIABILIS
371-398



PRECURSOR


PPRCA_THEAC
PROTEASOME, ALPHA SUBUNIT
THERMOPLASMA ACIDOPHILUM
88-115


PPRC_ECOLI
TAIL-SPECIFIC PROTEASE PRECURSOR
ESCHERICHIA COLI
158-192
366-393


PPREI_STAAU
PLASMID RECOMBINATION ENZYME
STAPHYLOCOCCUS AUREUS
27-78
152-179
264-347


PPRE2_STAAU
PLASMID RECOMBINATION ENZYME
STAPHYLOCOCCUS AUREUS
48-75
81-208
310-361
366-393


PPREA_LACPL
PLASMID RECOMBINATION ENZYME
LACTO BACILLUS PLANTARUM
37-71
291-318


PPRE_BACLI
REGULATORY PROTEIN
BACILLUS LICHENIFORMIS
2-40


PPRE_BACSP
PLASMID RECOMBINATION ENZYME
BACILLUS SP
181-224
288-345


PPRE_STRAG
PLASMID RECOMBINATION ENZYME
STREPTOCOCCUS AGALACTIAE
285-319
332-359
420-454


PPRFA_LISMO
LISTERIOLYSIN REGULATORY PROTEIN
LISTERIA MONOCYTOGENES
76-110
173-204


PPRIA_ECOLI
PRIMOSOMAL PROTEIN N′
ESCHERICHIA COLI
218-245


PPRIM_BACSU
DNA PRIMASE
BACILLUS SUBTILIS
383-433


PPRIM_BUCAP
DNA PRIMASE
BUCHNERA APHIDICOLA
13-43
282-319


PPRIM_CLOAB
DNA PRIMASE
CLOSTRIDIUM ACETOBUTYLICUM
87-114


PPRIM_LACLA
DNA PRIMASE
LACTOCOCCUS LACTIS
269-296


PPRIM_RICPR
DNA PRIMASE
RICKETFSIA PROWAZEKII
10-37
245-286
477-504
526-593


PPRIS_DESDE
PRISMANE PROTEIN
DESULFOVIBRIO DESULFURICANS
30-57


PPRLB_ACHLY
BETA-LYTIC METALLOENDOPEPTIDASE
ACHROMOBACTER LYFICUS
317-344


PPRLB_LYSEN
BETA-LYTIC METALLOENDOPEPTIDASE
LYSOBACTER ENZYMOGENES
121-148


PPROI_LISMO
ZINC METALLOPROTEINASE PRECURSOR
LISTERIA MONOCYTOGENES
111-145
275-316


PPRO2_LISMO
ZINC METALLOPROTEINASE PRECURSOR
LISTERIA MONOCYTOGENES
111-145


PPROA_SERMA
GAMMA-GLUTAMYL PHOSPHATE
SERRATIA MARCESCENS
309-336



REDUCTASE


PPROA_STAAU
PROTEIN A PRECURSOR
STAPHYLOCOCCUS AUREUS
2-29


PPROB_SERMA
GLUTAMATE 5-KINASE
SERRATIA MARCESCENS
7-34


PPROB_STRAG
PROTEIN B
STREPTOCOCCUS AGALACTIAE
58-85


PPROC_PSEAE
PYRROLINE-5-CARBOXYLATE
PSEUDOMONAS AERUGINOSA
148-175



REDUCTASE


PPROH_BACSU
PYRROLINE-S-CARBOXYLATE
HOMOL BACILLUS SUBTILIS
200-227



REDUCTASE


PPROP_ECOLI
PROLINE/BETAINE TRANSPORTER
ESCHERICHIA COLI
460-487


PPROV_ECOLI
PERIPHERAL MEMBRANE PROTEIN
ESCHERICHIA COLI
24-54



PROV


PPROV_SALTY
PERIPHERAL MEMBRANE PROTEIN
SALMONELLA TYPHIMURIUM
24-54



PROV


PPRRB_ECOLI
PRRB PROTEIN
ESCHERICHIA COLI
170-197


PPRRC_ECOLI
ANTICODON NUCLEASE
ESCHERICHIA COLI
282-309


PPRRD_ECOLI
PRRD PROTEIN
ESCHERICHIA COLI
278-305


PPRSA_BACSU
PROTEIN EXPORT PROTEIN PRSA
BACILLUS SUBTILIS
52-87
95-157



PRECURSOR


PPRTA_STRGR
PROTEASE A PRECURSOR
STREPTOMYCES GRISEUS
56-110


PPRTC_ERWCH
SECRETED PROTEASE C PRECURSOR
ERWINIA CHRYSANTHEMI
103-130


PPRTC_PORGI
COLLAGENASE PRECURSOR
PORPHYROMONAS GINGIVALIS
285-312


PPRTD_ERWCH
PROTEASES SECRETION PROTEIN PRTD
ERWINIA CHRYSANTHEMI
328-355


PPRTE_BACNO
EXTRACELLULAR SERINE PROTEASE
BACTEROIDES NODOSUS
106-133
219-265
346-384



PRECURSOR


PPRTE_ERWCH
PROTEASES SECRETION PROTEIN PRTE
ERWINIA CHRYSANTHEMI
108-135
158-192
231-290


PPRTF_ERWCH
PROTEASES SECRETION PROTEIN PRTF
ERWINIA CHRYSANTHEMI
280-310


PPRTM_LACLA
PROTEASE MATURATION PROTEIN
LACTOCOCCUS LACTIS
76-103
112-139



PRECURSOR


PPRTM_LACLC
PROTEASE MATURATION PROTEIN
LACTOCOCCUS LACTIS
26-53
76-103
112-139



PRECURSOR


PPRTM_LACPA
PROTEASE MATURATION PROTEIN
LACTO BACILLUS PARACASEI
76-103
112-139



PRECUSOR


PPRTS_SERMA
EXTRACELLULAR SERINE PROTEASE
SERRATIA MARCESCENS
304-331
576-607
1007-



PRECURSOR



1041


PPRTT_SERMA
EXTRACELLULAR SERINE PROTEASE
SERRATIA MARCESCENS
304-331
576-607
1007-



PRECURSOR



1041


PPRTX_ERWCH
SECRETED PROTEASE C PRECURSOR
ERWINIA CHRYSANTHEMI
314-341


PPSAA_SYNEN
CHLOROPHYLL A APOPROTEIN AI
SYNECHOCOCCUS ELONGATUS NAEGEL
120-147


PPSAA_SYNE2
CHLOROPHYLL A APOPROTEIN AI
SYNECHOCOCCUS SP
109-136
326-356


PPSAA_SYNVU
CHLOROPHYLL A APOPROTEIN AI
SYNECHOCOCCUS VULCANUS
120-147


PPSAA_SYNY3
CHLOROPHYLL A APOPROTEIN AI
SYNECHOCYSTIS SP
44-71
120-147
338-368


PPSAB_YERPE
CHAPERONE PROTCIN PSAB PRECURSOR
VERSINIA PESTIS
244-271


PPSAD_SYNP6
PHOTOSYSTEM I REACTION CENTRE
SYNECHOCOCCUS SP
11-38



SUBUNIT II


PPSAE_YERPE
PSAE PROTEIN PRECURSOR
YERSINIA PESTIS
66-118


PPSBO_ANANI
STABILIZING POLYPEPTIDE PRECURSOR
ANACYSTIS NIDULANS
99-126
209-243


PPSPA_ECOLI
PHAGE SHOCK PROTEIN A
ESCHERICHIA COLI
55-82


PPSRA_WOLSU
POLYSULFIDE REDUCTASE CHAIN
WOLINELLA SUCCINOGENES
114-141



A PRECURSOR


PPSTS_ECOLI
PHOSPHATE-BINDING PROTEIN
ESCHERICHIA COLI
40-74



PRECURSOR


PPTI_BACSU
PHOSPHOTRANSFERASE
BACILLUS SUBTILIS
26-60


PPTI_ECOLI
PHOSPHPTRRANSFERASE
ESCHERICHIA COLI
135-162
399-426


PPTI_SALTY
PHOSPHPTRRANSFERASE
SALMONELLA TYPIIIMURIUM
232-259
399-426


PPTI_STACA
PHOSPHPTRRANSFERASE
STAPHYLYOCOCCUS CARNOSUS
34-61


PPTI_STRSL
PHOSPHPTRRANSFERASE
STREPTOCOCCUS SALIVARIUS
34-61
198-232


PPT2B_ERWCH
PHOSPHPTRRANSFERASE ENZYME II
ERWINIA CIIRYSANTIIEMI
127-154


PPT2G_BACSU
PHOSPHPTRRANSFERASE ENZYME II
BACILLUS SUIITILIS
670-697


PPT2L_LACCA
PHOSPHPTRRANSFERASE ENZYME II
LACTOBACILLUS CASEI
537-564


PPT2L_LACLA
PHOSPHPTRRANSFERASE ENZYME II
LACTOCOCCUS LACTIS
183-214
409-436


PPT2L_STAAU
PHOSPHOTRANSFERASE ENZYME II
STAPHYLOCOCCUS ALREUS
421-448
530-553


PPT2M_ECOLI
PHOSPHOTRANSFERASE ENZYME II
ESCHERICHIA COLI
445-489


PPT2M_STACA
PHOSPHOTRANSFERASE ENZYME II
STAPHYLOCOCCUS CARNOSUS
388-415


PPT2N_ECOLI
N-ACETYLOLUCOSAMINE-PERMEM-E
ESCHERICHIA COLI
370-400


PPT2S_STRMU
PHOSPHOTRANSFERASE ENZYME II
STREPTOCOCCUS MUTANS
600-627


PPT3F_SALTY
PHOSPHOTRANSPERASE FPR PROTEIN
SALMONELLA TYPHIMURIUM
107-134


PPT3L_LACCA
PHOSPHOTRANSFERASE FACTOR III
LACTOBACILLUS CASEI
40-67


PPTHP_ECOLI
PHOSPHOCARRIER PROTEIN HPR
ESCHERICHIA COLI &
31-65




SALMONELLA TYPHIMURIUM


PPTHP_KLEPN
PHOSPHOCARRIER PROTEIN HPR
KLEBSIELLA PNEUMONIAE
31-65


PPTRB_ECOLI
PROTEASE II
ESCHERICHIA COLI
94-121
217-251


PPULA_KLEAE
PULLULANASE
ELEBSIELLA AEROGENES
894-928


PPULA_KLEPN
PULLULANASE
KLEBSIELLA PNEUMONIAE
894-918


PPULO_KLEPN
LEADER PEPTIDASE
KLEBSIELLA PNEUMONIAE
178-205


PPULS_KLEPN
PULS PRECURSOR
ELEBSIELLA PNEUMONIAE
70-97


PPUPA_PSEPU
UPTAKE PROTEIN PRECURSOR
PSEUDOMONAS PUTIDA
112-162
210-237
429-463
736-763


PPURI_BACSU
AMIDOPHOSPHORIBOSYLTRANSF PREC
BACILLUS SUBTILIS
394-421


PPUR2_BACSU
PHOSPHORIBOSYLAMINE-GLYCINE
BACILLUS SUBTILIS
349-376


PPUR3_BACSU
FORMYLTRANSFERASE
BACILLUS SUBTILIS
149-176


PPUR3_ECOLI
FORMYLTRANSPERASE
ESCHERICHIA COLI
27-54


PPUR4_BACSU
SYNTHASE I
BACILLUS SUBTILIS
18-45


PPUR5_BACSU
CYCLO-LIGASE
BACILLUS SUBTILIS
153-194


PPUR6_ECOLI
AIR CARBOXYLASE
ESCHERICHIA COLI
131-158


PPUR7_BACSU
SAICAR SYNTHETASE
BACILLUS SUBTILIS
3-43


PPUR8_BACSU
ADENYLOSUCCINATE LYASE
BACILLUS SUBTILIS
56-130
226-253


PPUR8_ECOLI
ADENYLOSUCCINATE LYASE
ESCHERICHIA COLI
194-221
331-372


PPUR9_BACSU
AICAR TRANSFORMYLASE
BACILLUS SUBTILIS
19-53
345-372


PPUR9_ECOLI
AICAR TRANSPORMYLASE
ESCHERICHIA COLI
239-268


PPUR9_SALTY
AICAR TRANSPORMYLASE
SALMONELLA TYPHIMURIUM
218-247


PPURL_BACSU
SYNTHASE II
BACILLUS SUBTILIS
609-636


PPYGI_ANASP
LINKER POLYPEPTIDE CPCGI
ANABAENA SP
88-115


PPYGI_MASLA
LINKER POLYPEPTIDE CPCGI
MASTIGOCLADUS LAMINOSUS
89-116


PPYG2_ANASP
LINKER POLYPEPTIDE CPCG2
ANABAENA SP
88-115


PPYG2_MASLA
LINKER POLYPEPTIDE CPCG2
MASTIGOCLADUS LAMINOSUS
89-116


PPYG3_MASLA
LINKER POLYPEPTIDE CPCG3
MASTIGOCLADUS LAMINOSUS
91-132


PPYG4_ANASP
LINKER POLYPEPTIDE CPCG4
ANABAENA SP
90-131


PPYRI_ANASP
32.1 KD LINKER POLYPEPTIDE
ANABAENA SP
35-62


PPYR2_FREDI
27.9 KD LINKER POLYPEPTIDE
FREMYELLA DIPLOSIPHON
105-132


PPYR4_FREDI
31.6 KD LINKER POLYPEPTIDE
FREMYELLA DIPLOSIPHON
22-66


PPYR5_FREDI
3.5 KD LINKER POLYPEPTIDE
FREMYELLA DIPLOSIPHON
106-143


PPYR6_FREDI
30.8 KD LINKER POLYPEPTIDE
FREMYELLA DIPLOSIPHON
43-70
113-140


PPYRB_BACSU
ASPARTATR CARBAMOYLTRANSFERASE
BACILLUS SUBTILIS
9-36


PPYRB_SERMA
ASPARTATE CARBAMOYLTRANSPERASE
SERRATIA MARCESCENS
70-97


PPYRD_ECOLI
DIHYDROOROTATE DEHYDROGENASE
ESCHERICHIA COLI
115-142


PPYRD_SALTY
DIHYDROOROTATE DEHYDROGENASE
SALMONELLA TYPHIMURIUM
115-142
183-210


PPYRG_BACSU
CTP SYNTHASE
BACILLUS SUBTILIS
275-302
322-349


PPYSI_FREDI
PHYCOBILISOME 9.7 KD
FREMYELLA DIPLOSIPHON
21-48



LINKER POLYPEPTIDE


PQOR_ECOLI
QUINONE OXIDOREDUCTASE
ESCHERICHIA COLI
180-215


PQUEA_ECOLI
QUEUOSINE BIOSYNTHESIS PROTEIN
ESCHERICHIA COLI
234-261



QUEA


PP34K_CLOPA
34.2 KD PROTEIN IN RUBREDOXIN OPERON
CLOSTRIDIUM PASTEURIANUM
23-50
157-232


PRACC_ECOLI
RACC PROTEIN
ESCHERCHIA COLI
5-32


PRACD_STRTR
ASPARTATE RACEMASE
STREPTOCOCCUS TIIERMOPHILUS
152-189


PRACX_BACSU
PROBABLE AMINO ACID RACEMASE
BACILLUS SUBTILIS
132-162


PRAFA_ECOLI
ALPHA-GALACTOSIDASE
ESCHERICHIA COLI
89-116


PRAFD_ECOLI
RAFFINOSE INVERTASE
ESCHERICHIA COLI
348-375


PRBSC_ECOLI
RIBOSE TRANSPORT SYSTEM COMPONENT
ESCHERICHIA COLI
65-99
195-222


PRBSK_ECOLI
RIBOKINASE
ESCHERICHIA COLI
200-239


PRBTR_KLEAE
RIBITOL (RBT) OPERON REPRESSOR
KLEBSIELLA AEROGENES
6-47


PRCSA_ECOLI
BIOSYNTHESIS ACTIVATION PROTEIN A
ESCHERICHIA COLI
170-197


PRCSA_ERWAM
BIOSYNTHESIS ACTIVATION PROTEIN A
ERWINIA AMYLOVORA
92-119
174-201


PRCSA_ERWST
BIOSYNTHESIS ACTIVATION PROTEIN A
ERWINIA STEWARTII
174-201


PRCSA_KLEAE
BIOSYNTHESIS ACTIVATION PROTEIN A
KLEBSIELLA AEROGENES
168-205


PRCSB_ECOLI
CAPSULE SYNTHESIS B COMPONENT
ESCHERICHIA COLI
14-41
159-186


PREC2_LEGPN
RECA PROTEIN
LEGIONELLA PHEUMOPHILA
262-310


PRECA_ACHLA
RECA PROTEIN
ACHOLEPLASMA LAIDLAWII
283-310


PRECA_AGRTU
RECA PROTEIN
AGROBACTERIUM TUMEFACIENS
3-30
132-159
281-308


PRECA_ANAVA
RECA PROTEIN
ANABAENA VARIABILIS
322-349


PRECA_AQUPY
RECA PROTEIN
AQUIFEX PYROPHILUS
63-90
126-153


PRECA_BACFR
RECA PROTEIN
BACTEROIDES FRAGILIS
108-135


PRECA_BACSU
RECE PROTEIN
BACILLUS SUBTILIS
267-294


PRECA_BRUAB
RECA PROTEIN
BRUCELLA ABORTUS
3-30
132-159
280-307


PRECA_BURCE
RECA PROTEIN
BURKHOLDERIA CEPACIA
75-109


PRECA_ERWCA
RECA PROTEIN
ERWINIA CAROTOVORA
284-311


PRECA_LACDE
RECA PROTEIN
LACTOBACILLUS DELBRUECKII
20-47


PRECA_LACHE
RECA PROTEIN
LACTOBACILLUS HEL VETICUS
20-47


PRECA_LACLA
RECA PROTEIN
LACTOCOCCUS LACTIS
135-162
232-269
288-315


PRECA_METCL
RECA PROTEIN
METHYLOMONAS CLARA
266-303


PRECA_METFL
RECA PROTEIN
METHYLOBACILLUS FLAGELLATUM
276-303


PRECA_MYCPU
RECA PROTEIN
MYCOPLASMA PULMONIS
30-57


PRECA_MYCTU
RECA PROTEIN
MYCOBACTERIUM TUBERCULOSIS
749-776


PRECA_NEIGO
RECA PROTEIN
NEISSERIA GONORRHOEAE
263-310


PRECA_PROMI
RECA PROTEIN
PROTEUS MIRABILIS
283-310


PRECA_PSEAE
RECA PROTEIN
PSEUDOMONAS AERUGINOSA
282-309


PRECA_RHILP
RECA PROTEIN
RHIZOBIUMLEGUMINOSARUM
3-30
131-158
280-307


PRECA_RHILV
RECA PROTEIN
RHIZOBIUM LEGUMINOSARUM
119-146
268-295


PRECA_RHIME
RECA PROTEIN
RHIZOBIUM MELILOTI
119-146
268-295


PRECA_RHOSH
RECA PROTEIN
RHODOBACTER SPHAEROIDES
119-146


PRECA_STRPN
RECA PROTEIN
STEEPTOCOCCUS PNEUMONIAE
134-161


PRECA_SYNP2
RECA PROTEIN
SYNECHOCOCCUS SP
124-151


PRECA_VIBCH
RECA PROTEIN
VIBRID CHOLERAE
290-317


PRECF_BACSU
RECA PROTEIN
BACILLUS SUBTILIS
4-31
178-205


PRECF_ECOLI
RECF PROTEIN
ESCHERICHIA COLI
82-109
147-174


PRECF_PROMI
RECF PROTEIN
PROTEUS MIRABILIS
86-113


PRECF_PSEPU
RECF PROTEIN
PSEUDOMONAS PUTIDA
84-111


PRECF_SALTY
RECF PROTEIN
SALMONELLA TYPHIMURIUM
147-174


PRECF_ECOLI
EXONUCLEASE RECI
ESCHERICHIA COLI
52-79


PRECN_BACSU
RECOMBINATION PROTEIN
BACILLUS SUBTILIS
21-48
156-184
192-247
299-336
344-378


PRECQ_ECQLI
DNA HELICASE RECQ
ESCHERICHIA CDLI
468-495


PRELA_ECOLI
GTP PYROPHOSPHOKINASE
ESCHER1CHIA COLI
680-707


PREMA_BACSU
REPLICATION AND MAINTENANCE PROTEIN
BACILLUS SUBTILIS
2-36
81-108


PREMA_STAAU
REPLICATION AND MAINTENANCE PROTEIN
STAPHYLOCOCCUS AUREUS
2-36
81-108


PREMA_STAEP
REPLICATION AND MAINTENANCE PROTEIN
STAPHYLOCOCCUS EPIDERMIDIS
2-36
81-108


PREP5_ECOLI
REPLICATION PROTEIN REPA
ESCHERICHIA COLI
50-77
90-117


PREPA_BACSU
REPA PROTEIN
BACILLUS SUBTILIS
342-272


PREPA_ECOLI
REPA PROTEIN
ESCHERICHIA COLI
91-118
228-255


PREPA_NEIGO
REPLICATION PROTEIN
NEISSERIA GONORRHOEAE
57-84
138-172


PREPB_LACPL
REPLICATION PROTEIN REFB
LACTOBACILLUS PLANTARUM
184-211


PREPM_STAAU
REPLICATION INITIATION PROTEIN
STAPHYLOCOCCUS AUREUS
254-284


PREPN_STAAU
REPLICATION INITIATION PROTEIN
STAPHYLOCOCCUS AUREUS
258-285


PREPR_STRAG
REPR PROTEIN
STREPTOCOCCUS AGALACTIAE
430-467


PREPS_STRPY
REPS PROTEIN
STREPTOCOCCUS PYOGENES
423-467


PREPX_STAAU
REP PROTEIN
STAPHYLOCOCCUS AUREUS
111-150
172-210


PREPY_ECOLI
REPLICATION INITIATION PROTEIN
ESCHERICHIA COLI
288-315


PREP_CLOPE
REPLICATION PROTEIN
CLOSTRIDIUM PERPRINGENS
168-195
297-324
343-375


PREP_ECOLI
REP HELICASE
ESCHERICHIA COLI
119-146
205-243


PREP_LACPL
REP PROTEIN
LACTOBACILLUS PLANTARUM
119-199
260-287


PRESP_CLOPE
RESOL VASE
CLOSTRIDIUM PERPRINGENS
68-102
151-185


PRF2_BACSU
PROBABLE PEPTIDE CHAIN
BACILLUS SUBTILIS
34-68



RELEASE FACTOR 2


PRF2_ECOLI
PEPTIDE CHAIN RELEASE FACTOR 2
ESCHERICHIA COLI
86-113
163-204


PRF2_SALTY
PEPTIDE CHAIN RELEASE FACTOR 2
SALMONELLA TYPHIMURIUM
86-113
163-204


PRF3_ECOLI
PEPTIDE CHAIN RELEASE FACTOR 3
ESCHERICHIA COLI
180-210
443-473


PRFAB_ECOLI
1,6-GALACTOSYLTRANSFERASE
ESCHERICHIA COLI
199-226


PRFAG_ECOLI
BIOSYNTHESIS PROTEIN RFAG
ESCHERICHIA COLI
185-212


PRFAJ_ECOLI
1-2-GLUCOSYLTRANSFERASE
ESCHERICHIA COLI
39-66
233-268


PRFAJ_SALTY
1,2-GLUCOSYLTRANSFERASE
SALMONELLA TYPHIMURIUM
68-95
145-172
236-263


PRFAK_SALTY
1,2-N-ACETYLGLUCOSAMINETRANSFERASE
SALMONELLA TYPHIMUIUUM
335-369


PRFAL_ECOLI
0-ANTIGEN LIGASE
ESCHERICHIA COLI
366-393


PRFAL_SALTY
0-ANTIGEN LIGASE
SALMONELLA TYPHIMURIUM
326-360


PRFAP_ECOLI
BIOSYNTHESIS PROTEIN RFAP
ESCHERICHIA COLI
8-35


PRFAS_ECOLI
BIOSYNTHESIS PROTEIN RFAS
ESCHERICHIA COLI
62-89
184-240


PRFAY_ECOLI
BIOSYNTHESIS PROTEIN RFAY
ESCHERICHIA COLI
18-45


PRFAZ_ECOLI
BIOSYNTHESIS PROTEIN RFAZ
ESCHERICHIA COLI
3-30
85-112


PRFBB_SALTY
DTDP-GLUCOSE 4,6-DEHYDRATASE
SALMONELLA TYPHIMURIUM
320-359


PRFBM_SALTY
MANNOSE-I-PHOSPHATE
SALMONELLA TYPHIMURIUM
313-361



GUANYLYLTRANSFERAS


PRFBS_SALTI
PARATOSE SYNTHASE
SALMONELLA TYPHI
22-56
205-232


PRFEA_VIBAN
PRECURSOR FOR FERRIC ANGUIBACTIN
VIBRIO ANGUILLARUM
349-376


PRFH_ECOLI
PEPTIDE CHAIN RELEASE FACTOR
ESCHERICHIA COLI
83-110



HOMOLOG


PRGI2_BACTU
PUTATIVE G12 SITE-SPECIFIC
BACILLUS THURONGIENSIS
15-68
190-262
310-383



RECOMBINASE


PRHAB_ECOLI
RHAMNULOKINASE
ESCHERICHIA COLI
175-202


PRHAB_SALTY
RHAMNULOKINASE
SALMONELLA TYPHIMURIUM
175-202


PRHAR_ECOLI
L-RHAMNOSE OPERON TRANSACTIVATOR
ESCHERICHIA COLI
10-41


PRHAS_ECOLI
L-RHAMNOSE OPERON REG
ESCHERICHIA COLI
152-179



PROTEIN RHAS


PRHIR_RHILV
RHIR REGULATORY PROTEIN
RHIZOBIUM LEGUMINOSARUM
206-233


PRHLB_ECOLI
RNA HELICASE RHLB/MMRA
ESCHERICHIA COLI
138-165


PRHO_BORBU
TRANS TERM FACTOR RHO
BORRELIA BURODORFERI
215-242
327-369


PRHPR_BACSU
PROTEASE PROD REG
BACILLUS SUBTILIS
82-109



PROTEIN HPR


PRHSA_ECOLI
RHSA PROTEIN PRECURSOR
ESCHERICHIA COLI
667-694


PRHSB_ECOLI
RHSB PROTEIN PRECURSOR
ESCHERICIIIA COLI
667-694


PRHSC_ECOLI
RHSC PROTEIN PRECURSOR
ESCHERICHIA COLI
380-414
667-694
1056-







1083


PRHSD_ECOLI
RHSD PROTEIN PRECURSOR
ESCHERICHIA COLI
671-712
1071-






1098


PRHSE_ECOLI
RHSE PROTEIN
ESCHERICHIA COLI
345-372


PRIML_ECOLI
ACETYLTRANSFERASE
ESCHERICHIA COLI
93-127


PRIR2_ECOLI
RIBONUCLEOSIDE-DIPHOSPHATE
ESCHERICHIA COLI
167-194



REDUCTASE


PRISA_PHOLE
RIBOFLAVIN SYNTHASE ALPHA CHAIN
PHOTOBACTERIUM LEIOGNATHI
2-47
131-158


PRISB_BACSU
RIBOFLAVIN SYNTHASE BETA CHAIN
BACILLUS SUBTILIS
8-35


PRISB_PHOLE
RIBOFLAVIN SYNTHASE BETA CHAIN
PHOTOBACTERIUM LEIOGNATHI
14-41


PRL10_STRAT
50S RIBOSOMAL PROTEIN L10
STREPTOMYCES ANTIBIOTICUS
14-72
106-133


PRL12_SYNY3
50S RIBOSOMAL PROTEIN L12
SYNECHOCYSTIS SP
2-34


PRL12_THEMA
50S RIBOSOMAL PROTEIN L12
THERMOTOGA MARITIMA
8-35
56-86


PRL14_BACST
50S RIBOSOMAL PROTEIN L14
BACILLUS STEAROTHERMOPHILUS
18-45


PRL14_MICLU
50S RIBOSOMAL PROTEIN L14
MICROCOCCUS LUTEUS
18-45


PRL14_MYCCA
50S RIBOSOMAL PROTEIN L14
MYCOPLASMA CAPRICOLUM
51-92


PRL15_BACLI
50S RIBOSOMAL PROTEIN L15
BACILLUS LICHENIFORMIS
21-48


PRL15_BACST
50S RIBOSOMAL PROTEIN L15
BACILLUS STEAROTHERMOPHILUS
95-134


PRL15_BACSU
50S RIBOSOMAL PROTEIN L15
BACILLUS SUiSTILIS
95-122


PRL15_ECOLI
50S RIBOSOMAL PROTEIN L15
CHALMYDIA TRACHOMATIS
110-144


PRL18_ECOLI
50S RIBOSOMAL PROTEIN L15
ESCHERICHIA COLI
79-113


PRL18_LACLA
50S RIBOSOMAL PROTEIN L15
LACTOCOCCUS LACTIS
8-35


PRL18_METVA
50S RIBOSOMAL PROTEIN L15
METNANOCOCCUS VANNIIEIlI
68-102


PRL18_MYCCA
50S RIBOSOMAL PROTEIN L18
MYCOPLASNIA CAPRICOLUNI
63-135


PRL18_BACST
50S RIBOSOMAL PROTEIN L18
BACILLUS STEAROTHERNIOPHILUS
31-53


PRL18_CHLTR
50S RIBOSOMAL PROTEIN L18
CHALMIYDIA TRACIIONIATIS
32-86


PRL18_HALMA
50S RIBOSOMAL PROTEIN L18
HALOARCULA MARISNIORTUI
80-107


PRL18_MYCCA
50S RIBOSOMAL PROTEIN L18
MYCOPLASMA CAPRICOIUM
61-88


PRL19_ECOLI
50S RIBOSOMAL PROTEIN L19
ESCHERICHIA COLI
25-52


PRL19_HALMA
50S RIBOSONIAL PROTEIN L19
HALOARCULA MARISNIORTUI
101-128


PRLI9_METVA
PROBABLE 50S RIBOSOMAL PROTEIN
METHANOCOCCUS VANNIELII
45-72


PRLI_PROVU
50S RIBOSOMAL PROTEIN LI
PROTEUS VULGARIS
159-194


PRLI_SULSO
50S RIBOSOMAL PROTEIN LI
SULFOLOBUS SOLFATARICUS
5-32
184-211


PRL20_ECOLI
50S RIBOSOMAL PROTEIN L20
ESCHERICHIA COLI
14-41


PRL20_MYCFE
50S RIBOSOMAL PROTEIN L20
MYCOPLASNIA FERMENTANS
14-41


PRL21_BACSU
50S RIBOSOMAL PROTEIN L21
BACILLUS SUIRTILIS
4-38


PPL22_ECOLI
50S RIBOSOMAL PROTEIN L22
ESCHERICHIA COLI
28-55


PRL23_METVA
50S RIBOSOMAL PROTEIN L23
METHANOCOCCUS VANNIELII
30-57


PRL23_MYCCA
50S RIBOSOMAL PROTEIN L23
MYCOPLASMA CAPRICOLUNI
32-59


PRL24_HALMA
50S RIBOSOMAL PROTEIN L24
HALOARCULA MARISNIORTUI
48-73


PRL24_METVA
50S RIBOSOMAL PROTEIN L24
METHANOCOCCUS VANNIELII
61-90


PRL24_MICLU
50S RIBOSOMAL PROTEIN L24
MICROCOCCUS LUTEUS
36-63


PRL29_CHLTR
50S RIBOSOMAL PROTEIN L29
CHLAMYDIA TRACIIOMATIS
39-66


PRL29_ECOLI
50S RIBOSOMAL PROTEIN L29
ESCHERICHIA CDLI
36-63


PPL29_MYCCA
50S RIBOSOMAL PROTEIN L29
MYCOPLASMA CAPRICOLUM
39-85


PPL4_BACST
50S RIBOSOMAL PROTEIN L4
BACILLUS STEAROTHERMOPHILUS
141-168


PPL4_MYCCA
50S RIBOSOMAL PROTEIN L4
MYCOPLASMA CAPRICOLUM
144-198


PPL5_THETH
50S RIDOSOMAL PROTEIN L5
THERMUS AQUATICUS
38-65


PPL6_BACST
50S RIBOSOMAL PROTEIN L6
BACILLUS STEAROTHERMOPHILUS
78-106


PRL6_ECOLI
50S RIBOSOMAL PROTEIN L6
ESCNERICHIA COLI
19-46


PRL6_METVA
50S RIBOSOMAL PROTEIN L6
METHANOCOCCUS VANNIELII
129-159


PRL9_BACST
50S RIBOSOMAL PROTEIN L9
BACILLUS STEAROTHERMOPHILUS
47-77


PRL9_ECOLI
50S RIBOSOMAL PROTEIN L9
ESCHERICHIA COLI
122-149


PRLA0_HALCU
ACIDIC RIBOSOMAL PROTEIN
HALOBACTERIUM CUTIRUBRUM
138-182



P0 HOMOLOG


PRLA0_HALHA
ACIDIC RIBOSOMAL PROTEIN
HALOBACTERIUM HALOBIUM 
138-182



P0 HOMOLOG


PRLA0_HALMA
ACIDIC RIBOSOMAL PROTEIN
HALOARCULA MARISMORTUl
64-91
153-184



P0 HOMOLOG


PRLA0_METVA
ACIDIC RIBOSOMAL PROTEIN
METHANOCOCCUS VANNIELII
194-221



P0 HOMOLOG


PRLA0_HALEU
RIBOSOMAL PROTEIN ′A′
HALOPHILIC EUBACTERIUM NRCC 41227
59-86


PRLA_HALHA
50S RIBOSOMAL PROTEIN L20
HALOBACTERIUM HALOBIUM
2-29


PRLA_HALMA
50S RIBOSOMAL PROTIEIN L12
HALOBACTERIUM MARISMORTUI
2-29


PRLA_METVA
RIBOSOMAL PROTEIN ′A′
METHANOCOCCUS VANNIELII
2-29


PRLA_MICLU
70S RIBOSOMAL PROTEIN MA
MICROCOCCUS LUITEUS
55-82
90-117


PRLXI_SALTY
43 KD RELAXATION PROTEIN
SALMONELLA TYPHIMURIUM
226-260


PREXI_STAAU
RLX PROTEIN
STAPHYLOCOCCUS AUREUS
3-30
102-132
177-218
266-300


PRLX2_SALTY
22 KD RELAXATION PROTEIN
SALMONELLA TYPHIMURIUM
19-53


PRLX2_STAAU
RLX PROTEIN
STAPHYLOCOCCUS AUREUS
3-30
102-133
261-295


PRLX3_STAAU
RLX PROTEIN
STAPHYLOCOCCUS AUREUS
3-30
146-216


PRLX_SULSO
50S RIBOSOMAL PROTEIN LX
SULFOLOBUS SOLFATARICUS
32-62


PRNBR_BACAM
RIBONUCLEASE PRECURSOR
BACILLUS AMYLOLIQUEFACIENS
33-67
129-156


PRNC_ECOLI
RIBONUCLEASE III
ESCHERICHIA COLI
10-37
117-144


PRNE_ECOLI
RIBONUCLEASE E
ESCHERICHIA COLI
413-440
628-662


PRNPA_BUCAP
RIBONUCLEASE P PROTEIN COMPONENT
BUCHNERA APHIDICOLA
85-114


PRNPH_BACSU
RIBONUCLEASE PH
BACILLUS SUBTILIS
159-186


PRNS_ECOLI
REGULATORY PROTEIN RNS
ESCHERICHIA COLI
116-160


PRN_BACCI
RIBONUCLEASE
BACILLUS CIRCULANS
82-109


PRN_BACIN
RIBONUCLEASE PRECURSOR
BACILLUS INTERMEDIUS
38-72


PRP28_BACTK
RNA POLYMERASE SIGMA-28
BACILLUS THURINGIENSIS
73-107



FACTOR PRECURSOR


PRP32_CITFR
RNA POLYMERASE SIGMA-32 FACTOR
CITROBACTER FREUNDII
30-57


PRP35_BACTK
RNA POLYMERASE SIOMA-35
BACILLUS THURINGIENSIS
8-35
63-90



FACTOR PRECURSOR


PRP54_ALCEU
RNA POLYMERASE SIGMA-54 FACTOR
ALCALIGENES EUTROPHUS
229-266


PRP54_AZOCA
RNA POLYMERASE SIGMA-54 FACTOR
AZORHIZOBIUM CAULINODANS
174-208


PRP54_BACSU
RNA POLYMERASE SIGMA-54 FACTOR
BACILLUS SUBTILIS
16-43
97-124
274-308
396-423


PRPS4_BRAJA
RNA POLYMERASE SIGMA-54 FACTOR I
BRADYRHIZOBIUM JAPONICUM
97-124


PRP54_KLEPN
RHA POLYMERASE SIGMA-54 FACTOR
KLEBSIELLA PNEUMONIAE
148-182


PRP54_RHOCA
RHA POLYMERASE SIGMA-54 FACTOR
RHODOBACTER CAPSULATUS
55-185


PRP55_BRAJA
RNA POLYMERASE SIGMA-54 FACTOR 2
BRADYRHIZOBIUM JAPONICUM
145-172


PRP5M_ALCEU
PROBABLE SIGMA(54) MODULATION
ALCALIGENES EUTROPHUS
21-51



PROTEIN


PRP5M_ECOLI
PROBABLE SIGMA(54) MODULATION
ESCHERICHIA COLI
21-67



PROTEIN


PRP5M_SALTY
PROBABLE SIGMA(54) MODULATION
SALMONELLA TYPHIMURIUM
21-67



PROTEIN


PRP70_BUCAP
RHA POLYMERASE SIGMA-70 FACTOR
BUCIINERA APHIDICOLA
69-96
109-136
173-217
228-255
303-337


PRP70_CHLTR
RHA POLYMERASE SIGMA-70 FACTOR
CHALMYDIA TRACHOMATIS
5-32


PRP70_ECOLI
RNA POLYMERASE SIGMA-70 FACTOR
ESCHERICHIA COLI
327-361


PRP70_PSEAE
RNA POLYMERASE SIGMA-70 FACTOR
PSEUDOMONAS AERUGINOSA
334-368


PRP70_RICPR
RHA POLYMERASE SIGMA-70 FACTOR
RICKETTSIA PROWAZEKII
244-321
348-382


PRP80_MYXXA
RNA POLYMERASE SIGMA-80 FACTOR
MYXOCOCCUS XANTHUS
208-235
318-347
359-386


PRPCF_SYNPY
BILIN BIOSYNTHESIS PROTEIN RPCF
SYNECHOCOCCUS SP
180-207


PRPOA_BACSU
DNA-DIRECTED RNA POLYMERASE
BACILLUS SUBTILIS
55-107



ALPHA CHAIN


PRPOA_HALHA
DNA-DIRECTED RNA POLYMERASE
HALOBACTERIUM HALOBIUM
863-904



SUBUNIT A


PRPOA_HALMO
A-DIRECTED RHA POLYMERASE
HALOCOCCUS MORRHUAE
229-270



SUBUNIT A


PRPOA_METFH
DNA-DIRECTED RNA POLYMERASE
METMANOBACTERIUM THERMOAUTOTROFHIC
218-245
486-513
642-669



SUBUNIT A


PRPOA_SULAC
DNA-DIRECTED RNA POLYMERASE
METHANOBACTERIUM THERMOAUTOTROPHIC
58-85
272-302
327-354



SUBUNIT C


PRPOA_METTH
DNA-DIRECTED RNA POLYMERASE
METHANOBACTERIUM
218-245
486-513
642-669



SUBUNIT A
THERMOAUTOTROPHICU


PRPOA_SULAC
DNA-DIRECTED RNA POLYMERASE
SULFOLOBUS ACIDOCALDARIUS
222-256
500-527
693-720



SUBUNIT A


PRPOA_THECE
DNA-DIRECTED RNA POLYMERASE
THERMOCOCCUS CELER
228-262



SUBUNIT A′


PRPOB_ECOLI
DNA-DIRECTED RNA POLYMERASE
ESCHERICHIA COLI
599-626
1011-



BETA CHAIN


1111


PRPOB_MYCLE
DNA-DIRECTED RNA POLYMERASE
MYCOBACTERIUM LEPRAE
723-760
1084-



BETA CHAIN


1111


PRPOB_SALTY
A-DIRECTED RNA POLYMERASE
SALMONELLA TYPHIMURIUM
599-626
958-985
1011-



BETA CHAIN



1038


PRPOB_SULAC
A-DIRECTED RNA POLYMERASE
SULFOLOBUS ACIDOCALDARIUS
160-187
255-282
534-561
827-861



SUBUNIT B


PRPOB_THEMA
A-DIRECTED RNA POLYMERASE
THERMOTOGA MARITIMA
350-377



BETA CHAIN


PRPOC_ANASP
DNA-DIRECTED RNA POLYMERASE
ANABAENA SP
152-194



GAMMA CHAIN


PRPOC_ECOLI
DNA-DIRECTED RNA POLYMERASE
ESCHERICHIA COLI
786-813
948-994
1223-



BETA′ CHAIN



1257


PRPOC_HALHA
DNA-DIRECTED RNA POLYMERASE
HALOBACTERIUM HALOBIUM
175-202



SUBUNIT C


PRPOC_HALMO
DNA-DIRECTED RNA POLYMERASE
HALOCOCCUS MORRHUAE
27-54
117-144
207-234



SUBUNIT C


PRPOC_METTH
DNA-DIRECTED RNA POLYMERASE
METHANOBACTERIUM
58-85
272-302
327-354



SUBUNIT C
THERMOAUTOTROPHICU


PRPOC_MYCLE
A-DIRECTED RNA POLYMERASE
MYCOBACTERIUM LEPRAE
273-300
860-887
911-938
1131-



BETA′ CHAIN




1158


PRPOC_NOSCO
DNA-DIRECTED RNA POLYMERASE
NOSTOC COMMUNE
150-192



GAMMA CHAIN


PRPOC_SULAC
DNA-DIRECTED RNA POLYMERASE
SULFOLOBUS ACIDOCALDARIUS
36-63
172-214
224-251



SUBUNIT C


PRPOC_THECE
DNA-DIRECTED RHA POLYMERASE
THERMOCOCCUS CELER
21-58


SUBUNIT A′′


PRPOD_NOSCO
DNA-DIRECTED RHA POLYMERASE
NOSTOC COMMUNE
72-116
402-449
539-566



DELTA CHAIN


PRPOE_ECOLI
RNA POLYMERASE SIGMA-E FACTOR
ESCHERICHIA COLI
5-39


PRPOS_ECOLI
RNA POLYMERASE SIGMA FACTOR KATF
ESCHERICHIA COLI
281-308


PRPOU_HALHA
DNA-DIRECTED RHA POLYMERASE
HALOBACTERIUM HALOBIUM
91-118



SUBUNIT B′


PRPSA_AGRTU
RNA POLYMERASE SIGMA-A FACTOR
AGROBACTERIUM TUMEFACIENS
310-347
397-427


PRPSA_ANASP
RNA POLYMERASE SIGMA-A FACTOR
ANABAENA SP
71-105


PRPSA_CLOAB
RNA POLYMERASE SIGMA-A FACTOR
CLOSTRIDIUM ACETOIIUTYLICUM
2-29


PRPSA_STRAU
RNA POLYMERASE SIGMA FACTOR RPOD
STREPTOMYCES AUREOFACIENS
278-305


PRPSB_ANASP
RNA POLYMERASE SIGMA-B FACTOR
ANABAENA SP
4-31


PRPSB_BACSU
RNA POLYMERASE SIGMA-B FACTOR
BACILLUS SUBTILIS
5-35
169-196
200-230


PRPSB_MYXXA
RNA POLYMERASE SIGMA-B FACTOR
MYXOCOCCUS XANTHUS
47-74


PRPSB_STIAU
RNA POLYMERASE SIGMA-B FACTOR
STIGMATELLA AURANTIACA
96-123


PRPSC_ANASP
RNA POLYMERASE SIGMA-C FACTOR
ANABAENA SP
58-85


PRPSD_BACSU
RNA POLYMERASE SIGMA-D FACTOR
BACILLUS SUBTILIS
192-249


PRPSE_BACSU
RNA POLYMERASE SIGMA-E FACTOR
BACILLUS SUBTILIS
63-90



PRECURSOR


PRPSE_CLOAB
RNA POLYMERASE SIGMA-E FACTOR
CLOSTRIDIUM ACETOBUTYLICUM
14-41
116-160


PRPSF_BACLI
RNA POLYMERASE SIGMA-F FACTOR
BACILLUS LICHENIFORMIS
4-31
191-248


PRPSF_BACME
RNA POLYMERASE SIGMA-F FACTOR
BACILLUS NIEGATERIUM
191-225


PRPSF_BACSU
RNA POLYMERASE SIGMA-F FACTOR
BACILLUS SUBTILIS
4-31
191-248


PRPSH_BACLI
RNA POLYMERASE SIGMA-H FACTOR
BACILLUS LICHENIFORNIIS
191-218


PRPSH_BACSU
RNA POLYMERASE SIGMA-H FACTOR
BACILLUS SUBTILIS
186-213


PRPSK_BACSU
RNA POLYMERASE SIGMA-K FACTOR
BACILLUS SUBTILIS
75-109
189-216


PRPSP_STAAU
RNA POLYMERASE SIGMA FACTOR PLAC
STAPHYLOCOCCUS AUREUS
19-46


PRPSW_STRCO
RNA POLYMERASE SIGMA FACTOR WHIG
STREPTOMYCES COELICOLOR
232-273


PRPSX_BACTK
POSSIBLE RNA POLYMERASE SIGMA-G
BACILLUS THURINGIENSIS
33-60



FACTOR


PRS10_ECOLI
30S RIBOSOMAL PROTEIN S10
ESCHERICHIA COLI
3-30


PRS11_BACSU
30S RIBOSOMAL PROTEIN S11
BACILLUS SUBTILIS
8-42


PRS13_BACSU
30S RIBOSOMAL PROTEIN S13
BACILLUS SUBTILIS
44-85


PRS17_METVA
30S RIBOSOMAL PROTEIN S17
METHANOCOCCUS VANNIELII
34-73


PRS1_ECOLI
30S RIBOSOMAL PROTEIN S1
ESCHERICHIA COLI
99-126
144-171


PPS1_PROSP
30S RIBOSOMAL PROTEIN S1
PROVIDENCIA SP
39-66
265-292
349-376


PRS1_RHIME
30S RIBOSOMAL PROTEIN S1
RHIZOBIUM MELILOTI
91-125
172-217


PRS21_BACST
30S RIBOSOMAL PROTEIN S21
BACILLUS STEAROTHERMOPHILUS
1-28


PRS2_SPICI
30S RIBOSOMAL PROTEIN S2
SPIROPLASMA CITRI
91-125


PRS3_ACHLA
30S RIBOSOMAL PROTEIN S3
ACHOLEPLASMA LAIDLAWII
83-110


PRS3_MYCCA
30S RIBOSOMAL PROTEIN S3
MYCOPLASMA CAPRICOLUM
77-106
136-163


PRS4_ECOLI
30S RIBOSOMAL PROTEIN S4
ESCHERICHIA COLI
50-77


PRS5_HALMA
30S RIBOSOMAL PROTEIN S5
HALOARCULA MARISMORTUI
160-187


PRS5_MYCCA
30S RIBOSOMAL PROTEIN S5
MYCOPLASMA CAPRICOLUM
35-62
182-216


PRS6_THETH
30S RIBOSOMAL PROTEIN S6
THERMUS AQUATICUS
16-43


PRS7_METVA
30S RIBOSOMAL PROTEIN S7
METHANOCOCCUS VANNIELII
69-96


PRS7_MYCLE
30S RIBOSOMAL PROTEIN S7
MYCOBACTERIUM LEPRAE
22-49


PRS8_MICLU
30S RIBOSOMAL PROTEIN S8
MICROCOCCUS LUTEUS
103-130


PRS8_MYCCA
30S RIBOSOMAL PROTEIN S8
MYCOPLASMA CAPRICOLUM
41-78


PRSGA_ECOLI
FERRITIN LIKE PROTEIN
ESCHERICHIA COLI
80-107


PRT67_ECOLI
RNA-DIRECTED DNA POLYMERASE
ESCHERICHIA COLI
225-268


PSACB_BACAM
LEVANSUCRASE PRECURSOR
BACILLUS AMYLOLIQUEFACIENS
175-202
254-281


PSACB_BACSU
LEVANSUCRASE PRECURSOR
BACILLUS SUBTILIS
175-202
254-288


PSACB_STRMU
LEVANSUCRASE PRECURSOR
STREPTOCOCCUS MUTANS
31-65
155-189
314-369


PSACQ_BACLI
SACQ REGULATORY FACTOR
BACILLUS LICHENIFORMIS
2-46


PSACT_BACSU
SACPA OPERON ANTITERMINATOR
BACILLUS SUBTILIS
102-129
189-216


PSAGP_STRPY
STREPTOCOCCAL ACID GLYCOPROTEIN
STREPTOCOCCUS PYOGENES
294-331
362-389


PSAOX_BACSN
SARCOSINE OXIDASE
BACILLUS SP
350-377


PSAS2_CLOBI
SPORE PROTEIN
CLOSTRIDIUM BIFERMENTANS
17-47


PSASO_BACCE
SPORE PROTEIN GAMMA-TYPE
BACILLUS CEREUS
31-58


PSASG_BACST
SPORE PROTEIN GAMMA-TYPE I
BACILLUS STEAROTHERMOPHILUS
37-64


PSBCC_ECOLI
EXONUCLEASE SBCC
ESCHERICHIA COLI
218-260
337-364
535-585
622-656
778-812
821-865
915-942


PSBCD_ECOLI
EXONUCLEASE SBCD
ESCHERICHIA COLI
137-164
334-397


PSBM_ECOLI
SBM PROTEIN
ESCHERICHIA COLI
5-32
436-470
553-580


PSBP_BACSU
SBP PROTEIN
BACILLUS SUBTILIS
28-55


PSCPA_STRPY
C5A PEPTIDASE PRECURSOR
STREPTOCOCCUS PYOGENES
126-160
784-811
831-880


PSCRB_KLEPN
SUCROSE-6-PHOSPHATE HYDROLASE
KLEBSIELLA PNEUMONIAE
174-201


PSCRB_LACLA
SUCROSE-6-PHOSPHATE HYOROLASE
LACTOCOCCUS LACTIS
182-217
354-385
395-422


PSCRB_STRMU
SUCROSE-6-PHOSPHATE HYDROLASE
STREPTOCOCCUS MUTANS
333-362


PSCRK_SALTH
FRUCTOKINASE
SALMONELLA THOMPSON
97-124


PSELO_ECOLI
PROTEIN-EXPORT MEMBRANE
ESCHERICHIA COLI
46-73
378-412



PROTEIN SECO


PSECF_ECOLI
PROTEIN-EXPORT MEMBRANE
ESCHERICHIA COLI
174-201



PROTEIN SECF


PSECY_ECOLI
PREPROTEIN TRANSLOCASE SECY
ESCHERICHIA COLI
101-128



SUBUNIT


PSECY_LACLA
PREPROTEIN TRANSLOCASE SECY
LACTOCOCCUS LACTIS
403-430



SUBUNIT


PSECY_METVA
PREPROTEIN TRANSLOCASE SECY
METHANOCOCCUS VANNIELII
131-161
396-423



SUBUNIT


PSECY_STACA
PREPROTEIN TRANSLOCASE SECY
STAPHYLOCOCCUS CARNOSUS
149-191



SUBUNIT


PSEFC_SALEN
SEFC PROTEIN PRECURSOR
SALMONELLA ENTERITIDIS
137-164
475-533


PSERA_BACSU
D-3-PHOSPHOGLYCERATE
BACILLUS SUBTILIS
16-43
347-374



DEHYDROGENASE


PSPAA_ECOLI
5-FIMBRIAL PROTEIN SUBUNIT
ESCHERICHIA COLI
11-38



PRECURSOR


PSFSA_ECOLI
SUGAR FERMENTATION STIMULATION
ESCHERICHIA COLI
81-115



PROTEIN


PSFUA_SERMA
IRON-TRANSPORT SFUA PROTEIN
SERRATIA NIARCESCENS
34-61



PRECURSOR


PSHU1_ECOLI
SHUFFLON PROTEIN A
ESCHERICHIA COLI
224-262


PSHU2_ECOLI
SHUFFLON PROTEIN A′
ESCHERICHIA COLI
224-262


PSHU3_ECOLI
SHUFFLON PROTEIN B
ESCIIERICHIA COLI
224-262


PSHU4_ECOLI
SHUFFLON PROTEIN B′
ESCHERICHIA COLI
224-262


PSHU5_ECOLI
SHUFFLON PROTEIN C
ESCHERICHIA COLI
224-262
402-429


PSHU6_ECOLI
SHUFFLON PROTEIN C′
ESCHERICHIA COLI
224-262


PSHU7_ECOLI
SHUFFLON PROTEIN D′
ESCHERICHIA COLI
224-262


PSINR_BACLI
SINR PROTEIN
BACILLUS LICHENIFORMIS
9-36
43-80


PSINR_BACSU
SINR PROTEIN
BACILLUS SUBTILIS
9-36
43-70


PSLAP_ACEKI
CELL SURFACE PROTEIN PRECURSOR
ACETOGENIUNI KIVUI
237-264
282-309
313-453
458-489
517-544
563-593
641-685
726-753


PSLPA_ECOLI
PROPHAGE CP4-57 INTEGRASE
ESCHERICHIA COLI
93-136


PSMF_ECOLI
SME PROTEIN
ESCHERICHIA COLI
24-51


PSMPB_ECOLI
SMALL PROTEIN B
ESCHERICHIA COLI
27-61
90-117


PSMP_ECOLI
SNIP PROTEIN PRECURSOR
ESCHERICHIA COLI
71-98


PSMTB_SYNP7
TRANSCRIPTIONAL REPRESSOR SMTB
SYNECHOCOCCUS SP
62-96


PSODF_COXBU
SUPEROXIDE DISMUTASE
COXIELLA BURNETII
116-143


PSODF_ECOLI
SUPEROXIDE DISMUTASE
ESCHERICHIA COLI
115-142


PSODF_METTH
SUPEROXIDE DISMUTASE
METHANOBACTERIUM THERMOAUTOTROPHIC
25-52


PSODF_PHOLE
SUPEROXIDE DISMUTASE
PHOTOBACTERIUM LEIOGNATHI
22-63


PSODM_PROFR
SUPEROXIDE DISMUTASE
PROPIONIBACTERIUM FREUDENREICHII
164-191


PSOHB_ECOLI
SOHB PROTEIN PRECURSOR
ESCHERICHIA COLI
7-48
70-97
273-300


PSOPB_ECOLI
SOPO PROTEIN
ESCHERICHIA COLI
252-279


PSOXA_ECOLI
SOXR PROTEIN
ESCHERICHIA COLI
16-63


PSPOJ_BACSU
STAGE 0 SPORULATION PROTEIN J
BACILLUS SUBTILIS
131-158


PSP2A_BACME
STAGE II SPORULATION PROTEIN AA
BACILLUS MEGATERIUM
19-53


PSP2A_BACSU
STAGE II SPORULATION PROTEIN AA
BACILLUS SUBTILIS
21-55


PSP2B_BACLI
STAGE II SPORULATION PROTEIN AB
BACILLUS LICHENIPORMIS
42-69


PSP2B_BACME
STAGE II SPORULATION PROTEIN AB
BACILLUS MEGATERIUM
36-73


PSP2D_BACSU
STAGE II SPORULATION PROTEIN D
BACILLUS SUBTILIS
134-161


PSP2G_BACTX
POSSIBLE ASPARTYL PROTEASE
BACILLUS THURINGIENSIS
4-36
117-144


PSP2J_BACSU
STAGE II SPORULATION PROTEIN J
BACILLUS SUBTILIS
14-44
463-500


PSP3D_BACSU
STAGE III SPORULATION PROTEIN D
BACILLUS SUBTILIS
9-36
52-86


PSP3J_BACSU
STAGE III SPORULATION PROTEIN J PRECURSOR
BACILLUS SUBTILIS
44-75


PSP4A_BACSU
STAGE IV SPORULATION PROTEIN A
BACILLUS SUBTILIS
139-180


PSP4B_BACSU
STAGE IV SPORULATION PROTEIN B
BACILLUS SUBTILIS
39-66


PSP4G_BACSU
STAGE IV SPORULATION PROTEIN FB
BACILLUS SUBTILIS
251-278


PSP5A_BACSU
STAGE V SPORULATION PROTEIN AF
BACILLUS SUBTILIS
9-36


PSPAA_STRDO
ANTIGEN I
STREPTOCOCCUS DOWNEI
184-218


PSPAB_BACSU
SUBTILIN BIOSYNTHESIS 117 KD PROTE
BACILLUS SUBTILIS
181-208


PSPAC_BACSU
SUBTILIN BIOSYNTHESIS PROTEIN SPAC
BACILLUS SUBTILIS
311-338


PSPAK_BACSU
SENSOR PROTEIN SPAK
BACILLUS SUBTILIS
80-107
224-251
290-324


PSPAP_STRMU
CELL SURFACE ANTIGEN I/II PRECURSOR
STREPTOCOCCUS MUTANS
122-276
281-276
538-565
576-630
1071-
1155-
1377-









1098
1182
1430


PSPAR_BACSU
REGULATORY PROTEIN
BACILLUS SUBTILIS
4-31
172-199


PSPAT_BACSU
SUBTILIN TRANSPORT PROTEIN SPAT
BACTILLUS SUBTILIS
55-82
226-267


SPSEC_STRPY
EXOTOXIN TYPE C PRECURSOR
STREPTOCOCCUS PYOGENES
12-39


PSPIR_SPICI
SPIRALIN
SPIROPLASMA CITRI
82-109
155-182


PSPER_SPIME
SPIRALEN
SPIROPLASMA MELLIFERUM
195-222


PSPOT_ECOLI
GUAN-3′,5′-BES(DIPHOS)
ESCHERICHIA COLI
637-664



3′-PYROPHOSPHOHYDROLA


PSPPA_ECOLI
PROTEASE IV
ESCHERICHEA COLI
278-305


PSQHC_ZYMMO
SQUALENE-HOPENE CYCLASE
ZYMOMONAS MOBILES
590-617


PSRFA_BACSU
SURFACTIN SYNTHETASE SUBUNIT A
BACILLUS SUBTILES
159-186
244-271


PSRP5_ECOLI
SIGNAL RECOGNITION PARTICLE
ESCHERICHIA COLI
301-328



PROTEIN


PSRPS_MYCMY
SIGNAL RECOGNITION PARTICLE
MYCOPLASMA MYCOIDES
21-65
107-141
394-428



PROTEIN


PSSAI_PASHA
SEROTYPE-SPECIFIC ANTIGEN
PASTEURELLA HABMOLYTECA
151-178
358-385
465-518
529-570
860-904



I PRECURSOR


PSSAB_STRPA
ADHESIN B PRECURSOR
STREPTOCOCCUS PARASANGUIS
32-59


PSSAB_STRSA
ADHESIN B PRECURSOR
STREPTOCOCCUS SANGUIS
21-59
101-128


PSSB_ECOLI
SINGLE-STRAND BINDING PROTEIN
ESCHERICHIA COLI
68-95


PSSB_PROMI
SINGLE-STRAND BINDING PROTEIN
PROTEUS MIRABILIS
63-104


PSSB_SERMA
SINGLE-STRAND BINDING PROTEIN
SERRATIA MARCESCENS
63-104


PSSP5_5STRSA
AGGLUTININ RECEPTOR PRECURSOR
STREPTOCOCCUS SANGUIS
131-173
178-287
295-483
565-592
676-710
1081-










1131


PSTAV_STRAV
STREPTAVIDIN PRECURSOR
STREPTOMYCES AVIDINII
125-152


PSTA_ECOLI
STREPTOTHRICIN ACETYLTRANSFERASE
ESCHERICHIA COLI
66-93


PSTC1_STAAU
STAPHYLOCOAGULASE PRECURSOR
STAPHYLOCOCCUS AUREUS
90-119
172-199
280-311


PSTC2_STAAU
STAPHYLOCOAGULASE PRECURSOR
STAPHYLOCOCCUS AUREUS
90-117
264-291


PSTC_CLOBE
L-TRANSD TRANSC CONTROL PROTEIN
CLOSTRIDIUM BEUERINCKII
47-74


PSTPA_ECOLI
STPA PROTEIN
ESCHERICHIA COLI
36-63


PSTRI_STRGR
INOSAMINE-PHOSPHATE
STREPTOMYCES GRISEUS
183-210



AMIDINOTRANSFERASE 1


PSTRP_STREQ
STREPTOKINASE C PRECURSOR
STREPTOCOCCUS EQUISIMILIS
209-236
281-308


PSTRP_STRPY
STREPTOKINASE A PRECURSOR
STREPTOCOCCUS PYOGENES
209-236


PSTRP_STRSP
STREPTOKINASE G PRECURSOR
STREPTOCOCCUS SP
209-236
281-308


PSUBE_BACSU
MINOR EXTRACELLULAR PROTEASE
BACILLUS SUBTILIS
435-462
522-563
605-639



EPR PREC


PSUBF_BACSU
BACILLOPEPTIDASE F PRECURSOR
BACILLUS SUBTILIS
40-67
89-116
121-148
554-597


PSUBI_SALTY
SULFATE-BINDING PROTEIN
SALMONELLA TYPHIMURIUM
37-74


PSUBI_SYNP7
SULFATE-BINDING PROTEIN PRECURSOR
SYNECHOCOCCUS SP
63-94


PSUBI_SYNY3
SULFATE-BINDING PROTEIN PRECURSOR
SYNECHOCYSTIS SP
64-91


PSUBT_BACLI
SUBTILISIN CARLSBERG PRECURSOR
BACILLUS LICHENIFORMIS
191-222


PSUBT_BACMS
SUBTILISIN
BACILLUS MESENTERICUS
91-118


PSUBT_BACS9
SUBTILISIN PRECURSOR
BACILLUS SP
36-63
250-277


PSUBT_BACSA
SUBTILISIN AMYLOSACCHARITICUS
BACILLUS SUBTILIS
197-224



PRECURSOR


PSUBT_BACSD
SUBTILISIN
BACILLUS SUBTILIS
86-117


PSUBT_BACST
SUBTILISIN J PRECURSOR
BACILLUS STEAROTHERMOPHILUS
197-224


PSUBT_BACSU
SUBTILISIN E PRECURSOR
BACILLUS SUBTILIS
197-224


PSUBV_BACSU
MINOR EXTRACELLULAR PROTEASE
BACILLUS SUBTILIS
55-108
613-654
741-768



VPR PRECUR


PSUCC_ECOLI
SUCCINYL-COA SYNTHETASE BETA
ESCHERICHIA COLE
62-89


PSUCP_AGRV1
SUCROSE PHOSPHORYLASE
AGROBACTERIUM VITIS
449-476


PSULA_ENTAE
CELL DIVISION INHIBITOR
ENTEROBACTER AEROGENES
112-139


PSYA_ECOLI
ALANYL-TRNA SYNTHETASE
ESCHERICHIA COLE
257-287
725-752
790-821


PSYD_ECOLI
ASPARTYL-TRNA SYNTHETASE
ESCHERICHIA COLI
330-357


PSYE_BACST
GLUTAMYL-TRNA SYNTHETASE
BACILLUS STEAROTHERMOPHILUS
49-76


PSYE_BAOBU
GLUTAMYL-TRNA SYNTHETASE
BACILLUS SUBTILIS
49-76
351-386


PSYE_THETH
GLUTAMYL-TRNA SYNTHETASE
THERMUS AQUATECUS
405-432


PSYFA_BACSU
PHENYLALANYL-TRNA SYNTHETASE
BACILLUS SUBTILIS
7-34



A CHAIN


PSYFB_BACSU
PHENYLALANYL-TRNA SYNTHETASE
BACILLUS SUBTELIS
340-367
407-441



BETA CHAIN


PSYFB_ECOLI
PHENYLALANYL-TRNA SYNTHETASE
ESCHERICHIA COLI
546-573
607-634
744-771



BETA CHAIN


PSYGB_ECOLI
GLYCYL-TRNA SYNTHETASE
ESCHERICHIA COLI
354-381
487-514



BETA CHAIN


PSYH_STREQ
HISTIDYL-TRNA SYNTHETASE
STREPTOCOCCUS EQUISIMILIS
376-403


PSYI_METTH
ISOLEUCYL-TRNA SYNTHETASE
METHANOBACTERIUM THERMOAUTOTROPHIC
1010-





1037


PSYK1_ECOLI
LYSYL-TRNA SYNTHETASE
ESCHERICHIA COLI
283-310


PSYK2_ECOLI
LYSYL-TRNA SYNTHETASE, HEAT
ESCHERICHIA COLI
45-72
283-310



INDUCIBLE


PSYL_ECOLI
LEUCYL-TRNA SYNTHETASE
ESCHERICHIA COLI
220-247


PSYM_BACST
METHIONYL-TRNA SYNTHETASE
BACILLUS
69-99



STEAROTHERMOPHILUS


PSYM_ECOLI
METHIONYL-TRNA SYNTHETASE
ESCHERICHIA COLI
87-124


PSYP_ECOLI
PROLYL-TRNA SYNTHETASE
ESCHERICHIA COLI
541-568


PSYQ_ECOLI
GLUTAMINYL-TRNA SYNTHETASE
ESCHERICHIA COLI
394-421


PSYRD_PSESY
SYRD PROTEIN
PSELIDOMONAS SYRINGAE
449-483


PSYR_ECOLI
ARGINYL-TRNA SYNTHETASE
ESCHERICHIA COLI
540-574


PSYTI_BACSU
THREONYL-TRNA SYNTHETASE
BACILLUS SUBTILIS
401-428
605-639


PSYV_BACST
VALYL-TRNA SYNTHETASE
BACILLUS STEAROTHERMOPHILUS
603-630
809-843


PSYV_ECOLI
VALYL-TRNA SYNTHETASE
ESCHERICHIA COLI
300-327
882-912
924-951


PSYW_BACST
TRYPTOPHANYL-TRNA SYNTHETASE
BACILLUS STEAROTHERMOPHILUS
204-231
239-266


PSYY1_BACSU
TYROSYL-TRNA SYNTHETASE 1
BACILLUS SUBTILIS
81-115
375-409


PSYY2_BACSU
TYROSYL-TRNA SYNTHETASE 2
BACILLUS SUBTILIS
69-96


PSYY_BACCA
TYROSYL-TRNA SYNTHETASE
BACILLUS CALDOTENAX
295-322
332-416


PSYY_BACST
TYROSYL-TRNA SYNTHETASE
BACILLUS STEAROTIERMOPHILUS
295-322
372-416


PTIMI_ECOLI
ENZYME ECOR 124/3 PROTEIN
ESCHEIHCHIA COLI
126-167
405-432
485-512


PTIRI_ECOLI
ENZYME ECOR 124/3 PROTEIN
ESCHEHICHIA COLI
30-57
624-651
702-736
768-795
843-870
966-










1000


PTIR_ECOLI
ENZYME ECOK IR PROTEIN
ESCHERICHIA COLI
158-263


PTISI_ECOLI
ENZYME ECOR 124/3 SPECIFICITY PROTEIN
ESCHERICHIA COLI
154-181


PTISA_ECOLI
ENZYME ECOA I SPECIFICITY PROTEIN
ESCHERICHIA COLI
279-306


PTISB_ECOLI
ENZYME ECOB I SPECIFICITY PROTEIN
ESCHERICHIA COLI
278-312


PTISD_ECOLI
ENZYME ECOD I SPECIFICITY PROTEIN
ESCHERICH1A COLI
249-283


PTISE_ECOLI
ENZYME ECOE I SPECIFICITY PROTEIN
ESCHERICHIA COLI
279-306


PTIS_SALDO
ENZYME SPECIFICITY PROTEIN
SALMONELLA POTSDAM
396-423


PTIS_SALTY
ENZYME SPECIFICITY PROTEIN
SALMONELLA TYPHIMURIUM
194-221
276-304
402-429


PT257_ECOLI
TYPE II RESTRICTION ENZYME EC0571
ESCHERICHIA COLI
138-196
265-295
406-440
639-682
687-728
926-954


PT2AI_ACICA
TYPE II RESTRICTION ENZYME ACCI
ACINETOBACTER CALCOACETICUS
49-76


PT2BF_BACSU
TYPE II RESTRICTION ENZYME BSUFI
BACILLUS SUBTILIS
3-43
135-223
236-280


PT2BR_BACSU
TYPE II RESTRICTION ENZYME BSURI
BACILLUS SUBTILIS
3-45
338-384
401-430
532-559


PT2CI_CITFR
TYPE II RESTRICTION ENZYME CFRBI
CITROBACTER FREUNOII
35-62


PT2CI_HERAU
TYPE II RESTRICTION ENZYME HGICII
HERPETOSIPHON AURANTIACUS
176-215


PT2C2_HERAU
TYPE II RESTRICTION ENZYME HGICII
HERPETOSIPHON AURANTIACUS
243-273


PT2DI_DESON
TYPE II RESTRICTION ENZYME DDEI
DESULFOVIBRIO DESULFURICANS
85-122


PT2DI_STRPN
TYPE II RESTRICTION ENZYME DPNI
STREPTOCOCCUS PNEUMONIAE
213-240


PT2EI_ECOLI
TYPE II RESTRICTION ENZYME ECORI
ESCHERICHIA COLI
2-29


PT2E2_ECOLI
TYPE II RESTRICTION ENZYME ECORII
ESCIHERICHIA COLI
333-360


PT2E5_ECOLI
TYPE II RESTRICTION ENZYME ECORV
ESCIHERICHIA COLI
128-155
214-241


PT2FI_FLAOK
TYPE II RESTRICTION ENZYME FOKI
FLAVOBACTERIUM OKEANOKOITES
302-336


PT2H1_HAEIN
TYPE II RESTRICTION ENZYME HINFI
HAEMOPHILUS INFLUENZAE
6-38
69-96


PT2H1_HAEPA
TYPE II RESTRICTION ENZYME HPAI
HAEMOPHILUS PARAINFLUENZAE
77-125


PT2H2_HAEHA
TYPE II RESTRICTION ENZYME HHAII
HAEMOPHILUS HAEMOLYTICUS
23-50


PT2H2_HAEIN
TYPE II RESTRICTION ENZYME HINCII
HAEMOPHILUS INFLUENZAE
97-138


PT2KI_KLEPN
TYPE II RESTRICTION ENZYME KPNI
KLEBSIELLA PNEUMONIAE
18-45
178-205


PT2MI_MORBO
TYPE II RESTRICTION ENZYME MBOI
MORAXELLA BOVIS
15-61
187-215
225-252


PT2M2_MORBO
TYPE II RESTRICTION ENZYME MEOII
MORAXELLA BOVIS
3-30
158-185
337-364


PT2MZ_METIF
TYPE II RESTRICTION ENZYME MTHZI
METHANOBACTERIUM THERMOFORMICICUM
105-151


PT2NG_NEIGO
TYPE II RESTRICTION ENZYME NGOPII
NEISSERIA GONORRHOEAE
117-144
231-258


PT2S1_STRSA
TYPE II RESTRICTION ENZYME STSI
STREPTOCOCCUS SANGUIS
5-32
41-68
395-446


PT2S2_SHISO
TYPE II RESTRICTION ENZYME SSOII
SHIGELLA SONNEI
206-243
258-288


PT2S3_STAAU
TYPE II RESTRICTION ENZYME SAU3AI
STAPHYLOCOCCUS AUREUS
70-102


PT2SI_SALIN
TYPE II RESTRICTION ENZYME SINI
SALMONELLA INFANTIS
144-181


PT2SM_SERMA
TYPE II RESTRICTION ENZYME SMAI
SERRATIA MARCESCENS
61-88


PT2TA_ThEAQ
TYPE II RESTRICTION ENZYME TAQI
THERMUS AQUATICUS
147-181
203-237


PT3MO_ECOLI
SYSTEM ECOPIS ENZYME MOD
ESCHERICHIA COLI
37-71
75-102
236-296 378-405


PT3RE_BACCE
SYSTEM ENZYME RES
BACILLUS CEREUS
62-89
256-283


PTA47_TREPA
47 KD MEMBRANE ANTIGEN PRECURSOR
TREPONEMA PALLIDUM
26-53


PTA53_TREDE
53 KD MEMBRANE ANTIGEN A PRECURSOR
TREPONEMA DENTICOLA
99-126
298-329


PTACY_BACAL
ALVEOLYSIN PRECURSOR
BACILLUS ALVEI
272-302
374-401


PTACY_CLOPE
PERFRINGOLYSIN O PRECURSOR
CLOSTRIDIUM PERFRINGENS
270-311
372-434


PTACY_LISIV
IVANOLYSIN PRECURSOR
LISTERIA IVANOVII
93-120
167-195
396-423


PTACY_LISMO
LISTERIOLYSIN O PRECURSOR
LISTERIA MONOCYTOGENES
98-125
168-196
295-329
397-424


PTACY_LISSE
SEELIGERIOLYSIN PRECURSOR
LISTERIA SEELIGERI
99-126
296-323
349-376
398-463


PTACY_STRPN
PNEUMOLYSIN
STREPTOCOCCUS PNEUMONIAE
234-272


PTACY_STRPY
STREPTOLYSIN O PRECURSOR
STREPTOCOCCUS PYOGENES
86-133
355-382
440-470


PTAGB_BACSU
TECHOIC ACID BIOSYN PROTEIN B PREC
BACILLUS SUBTILIS
42-69


PTAGC_BACSU
TECHOIC ACID BIOSYNTHESIS PROTEIN C
BACILLUS SUBTILIS
348-375


PTAGE_BACSU
TECHOIC ACID BIOSYNTHESIS PROTEIN B
BACILLUS SUBTILIS
59-93
144-181
185-243
565-592
600-627


PTAGF_BACSU
TECHOIC ACID BIOSYNTHESIS PROTEIN F
BACILLUS SUBTILIS
182-209


PTBPI_NEIGO
TRANSFERRINBINDING PROTEIN
NEISSERIA GONORRHOEAE
39-73
137-164
398-425
810-841



I PRECURSOR


PTBUD_PSEPI
PHENOL 2-MONOOXYGENASE
PSEUDOMONAS PICKETTII
38-65
227-254
375-402


PTCDT_SALTY
TRANSCRIPTIONAL REGULATORY
SALMONELLA TYPHIMURIUM
105-132



PROTEIN TCDT


PTCPC_VIBCH
MEMBRANE PROTEIN TCPC PRECURSOR
VIBRIO CHOLERAE
20-47
83-128
199-233
263-290
344-375
459-486


PTCPE_VIBCH
TCP PILUS BIOSYNTHESIS PROTEIN TCPE
VIBRIO CHOLERAE
24-59
77-111


PTCPF_VIBCH
TCP PILUS SECRETION PROTEIN TCPF
VIBRIO CHOLERAE
32-66
211-238


PTCPH_VIBCH
TCP PILUS BIOSYNTHESIS PROTEIN TCPH
VIBRIO CHOLERAE
95-122


PTCPI_VIBCH
TCP PILUS BIOSYNTHESIS PROTEIN TCPI
VIBRIO CHOLERAE
25-52
234-261
279-306
346-379


PTCPN_VIBCH
TCP PILUS VIRULENCE REGULATORY PROTEIN
VIBRIO CHOLERAE
48-75


PTCPO_VIBCH
TCP PILUS BIOSYNTHESIS PROTEIN TCPO
VIBRIO CHOLERAE
230-257


PTCPY_VIBCH
TCP PILUS BIOSYNTHESIS PROTEIN TCPY
VIBRIO CHOLERAE
121-148


PTCPZ_VIBCH
TCP PILUS BIOSYNTHESIS PROTEIN TCPZ
VIBRIO CHOLERAE
44-85


PTCR2_BACSU
TETRACYCLINE RESISTANCE PROTEIN
BACILLUS SUBTILIS
404-434


PTCR_BACST
TETRACYCLINE RESISTANCE PROTEIN
BACILLUS STEAROTHERMOPHILUS
422-453


PTCR_STAAU
TETRACYCLINE RESISTANCE PROTEIN
STAPHYLOCOCCUS AUREUS
404-431


PTCR_STRAG
TETRACYCLINE RESISTANCE PROTEIN
STREPTOCOCCUS AGALACTIAE
422-453


PTCR_STRPN
TETRACYCLINE RESISTANCE PROTEIN
STREPTOCOCCUS PNEUMONIAE
422-453


PTDCA_ECOLI
TDCABC OPERON TRANSCRIPTIONAL
ESCHERICHIA COLI
210-239



ACTIVATOR


PTDCC_ECOLI
TDCC PROTEIN
ESCHERICHIA COLI
334-361


PTEE6_STRPY
TRYPSIN-RESIST SURFACE T6
STREPTOCOCCUS PYOGENES
137-164
361-395
400-437



PROTEIN PREC


PTER2_ECOLI
TETRACYCLINE REPRESSOR PROTEIN
ESCHERICHIA COLI
8-36



CLASS B


PTER4_ECOLI
TETRACYCLINE REPRESSOR PROTEIN
ESCHERICHIA COLI
183-210



CLASS D


PTERA_ALCSP
TELLURIUM RESISTANCE PROTEIN TERA
ALCALIGENES SP
48-86


PTESD_ECOLI
ACYL-COA THIOESTERASE II
ESCHERICHIA COLI
4-31


PTETS_ENTFA
TETRACYCLINE RESISTANCE PROTEIN TETM
ENTEROCOCCUS FARCALIS
2-36
130-150
179-206
217-244


PTET9_ENTFA
TETRACYCLINE RESISTANCE PROTEIN TETM
ENTEROCOCCUS FAECALIS
2-36
130-139
217-244
260-287


PTETC_ECOLI
TRANSPOSON TN10 TETC PROTEIN
ESCHERICHIA COLI
72-106
116-158


PTETM_STRLI
TETRACYCLINE RESISTANCE PROTEIN
STREPTOMYCES LIVIDANS
82-109


PTETM_UREUR
TETRACYCLINE RESISTANCE
UREAPLASMA UREALYTICUM
2-36
130-159
217-244
260-287



PROTEIN TETM


PTETO_CAMCO
TETRACYCLINE RESISTANCE
CAMPYLOBACTER COLI
2-29



PROTEIN TETO


PTETO_CAMJE
TETRACYCLINE RESISTANCE
CAMPYLOBACTER JEJUNI
2-36



PROTEIN TETO


PTETO_STRMU
TETRACYCLINE RESISTANCE
STREPTOCOCCUS MUTANS
2-29



PROTEIN TETO


PTETX_BACFR
TETRACYCLINE RESISTANCE PROTEIN
BACTEROIDES FRAGILIS
35-62


PTETX_CLOTE
TETANUS TOXIN PRECURSOR
CLOSTRIDIUM TETANI
274-304
540-567
615-642
692-719
985-
1240-









1012
1277


PTF2B_PYRWO
TRANS INITIATION FACTOR IIB HOMOLOG
PYROCOCCUS WOESBI
218-258


PTFDC_ALCEU
CHLOROCATECHOL 1,2-DIOXYGENASE
ALCALIGENES EUTROPHUS
2-33


PTGT_ECOLI
QUEUINE TRNA-RIBOSYLTRANSFERASE
ESCHERICHIA COLI
173-200


PTHD1_LACLA
THREONINE DEHYDRATASE BIOSYNTHETIC
LACTOCOCCUS LACTIS
267-303


PTHD2_ECOLI
THREONINE DEHYDRATASE CATABOLIC
ESCHERICHIA COLI
293-320


PTHDF_BACSU
FURAN OXIDATION PROTEIN THDF
BACILLUS SUBTILIS
153-180
192-226
282-226
391-418


PTHDF_ECOLI
FURAN OXIDATION PROTEIN THDF
ESCHERICHIA COLI
226-260
404-431


PTHDF_PSEPU
FURAN OXIDATION PROTEIN THDF
PSEUDOMONAS PUTIDA
226-260


PTHER_BACCE
THERMOLYSIN
BACILLUS CEREUS
4-38
240-267


PTHER_BACST
THERMOLYSIN PRECURSOR
BACILLUS STEAROTHERMOPHILUS
45-72


PTHER_BACTH
THERMOLYSIN
BACILLUS THERMOPROTEOLYTICUS
86-113


PTHET_THEVU
THERMITASE
THERMOACTINOMYCES VULGARIS
131-161


PTHIC_ECOLI
THIC PROTEIN
ESCHERICHIA COLI
232-263
301-328


PTHIG_ECOLI
THIG PROTEIN
ESCHERICHIA COLI
138-165


PTHPS_SULAC
THERMOPSIN PRECURSOR
SULFOLOBUS ACIDOCALDARIUS
135-172
199-233


PTHRC_BRELA
THREONINE SYNTHASE
BREVIBACTERIUM LACTOFERMENTUM
288-315


PTHTR_SACER
PUTATIVE THIOSULFATE
SACCHAROPOLYSPORA ERYTHRAEA
69-96



SULFURTRANSFERASE


PTIG_ECOLI
TRIGGER FACTOR
ESCHERICHIA COLI
144-171


PTMPA_TREPA
TREPONEMAL MEMBRANE PROTEIN A
TREPONEMA PALLIDUM
236-266



PRECURSOR


PTMPB_TREPA
TREPONEMAL MEMBRANE PROTEIN B
TREPONEMA PALLIDUM
44-71



PRECURSOR


PTMPB_TREPH
TEEPONEMAL MEMBRANE PROTEIN B
TREPONEMA PHAGEDENIS
41-68



PRECURSOR


PTNAB_ECOLI
LOW AFFINITY TRYPTOPHAN PERMEASE
ESCHERICHIA COLI
74-108


PTNP4_STAAU
TRANSPOSASE
STAPHYLOCOCCUS AUREUS
52-79
322-349


PTNP7_ENTFA
TRANSPOSON TN9I7 RESOLVASE
ENTEROCOCCUS FAECALIS
59-97
111-138


PTNPA_STAAU
TRANSPOSASE A
STAPHYLOCOCCUS AUREUS
151-178


PTNPB_STAAU
TRANSPOSASE B
STAPHYLOCOCCUS AUREUS
589-625


PTNPI_BACTU
TNP I RESOLVASE
BACILLUS THURINGIENSIS
7-62
65-92
174-201


PTNSB_ECOLI
TRANSPOSON TN7 TRANSPOSITION
ESCHERICHIA COLI
99-126
510-537



PROTEIN TNSB


PTNSC_ECOLI
TRANSPOSON TN7 TRANSPOSITION
ESCHERICH1A COLI
32-59
314-341



PROTEIN TNSC


PTNSD_ECOLI
TRANSPOSON TN7 TRANSPOSITION
ESCHERICHIA COLI
339-366



PROTEIN TNSD


PTNSE_ECOLI
TRANSPOSON TN7 TRANSPOSITION
ESCHERICHIA COLI
463-490



PROTEIN TNSE


PTOD1_PSEPU
TOLUENE 1-2-DIOXYGENASE
PSEUDOMONAS PUTIDA
36-63



ALPHA SUBUNIT


PTOD2_PSEPU
TOLUENE 1,2-DIOXYGENASE
PSEUDOMONAS PUTIDA
119-153



BETA SUBUNIT


PTODA_PSEPU
TOLUENE 1-2-DIOXYGENASE SYSTEM
PSEUDOMONAS PUTIDA
179-213


PTODI_PSEPO
TODF PRODUCT HYDRATASE
PSEUDOMONAS PUTIDA
143-170


PTOLA_ECOLI
TOLA PROTEIN
ESCHERICHIA COLI
101-138


PTOLC_ECOLI
OUTER MEMBRANE PROTEIN TOLC PRECURSOR
ESCHEIUCHIA COLI
144-178
184-211
239-266
348-443


PTOPI_SYNP7
DNA TOPOISOMERASE I
SYNECHOCOCCUS SP
203-230


PTORA_ECOLI
TRIMETHYLAMINE-N-OXIDE
ESCHERICHIA COLI
797-824



REDUCTASE


PTOXI_BORPE
PERTUSSIS TOXIN SUBUNIT 1
BORDETELLA PERTUSSIS
179-206



(S1) PRECURSOR


PTOX2_BORPE
PERTUSSIS TOXIN SUBUNIT 2
BORDETELLA PERTUSSIS
58-85



(S2) PRECURSOR


PTOXA_CLODI
TOXIN A
CLOSTRIDIUM DIFFICILE
20-88
99-159
204-231
342-369
373-414
847-962
966-994
997-1024
1348-1402


PTOXA_PSEAE
EXOTOXIN A PRECURSOR
PSEUDOMONAS AERUGINOSA
470-497


PTOXB_CLODI
TOXIN B
CLOSTRIDIUM DIFFICILE
38-72
133-163
199-241
825-869
923-950
1334-
1403-
1506-
1716-










1388
1433
1565
1747


PTOXS_VIBCH
TRANSHEMBRANE REGULATORY
VIBRIO CHOLERAE
13-40



PROT TOXS


PTPFI_TREPA
ANTIGEN TPFI
TREPONEMA PALLIDUM
106-143


PTPIS_ECOLI
TRIOSEPHOSPHATE ISOMERASE
ESCHERICHIA COLI
83-110


PTPIS_MORSP
TRIOSEPHOSPHATE ISOMERASE
MORAXELLA SP
139-166


PTPR_PORGI
TNIOL PROTEASE PRECURSOR
PORPIIYROMONAS GINGIVALIS
117-144


PTR2M_AGRT3
TRYPTOPHAN 2-MONOOXYGENASE
AGROBACTERIUM TUMEFACIENS
239-266
501-529


PTR2M_AGRT4
TRYPTOPHAN 2-MONOOXYGENASE
AGROBACTERIUM TUMEFACIENS
239-266
501-529


PTR2M_PSESS
TRYPTOPHAN 2-MONOOXYGENASE
PSEUDOMONAS SYRINGAE
41-68


PTRAI_STAAU
TRANSPOSASE
STAPHYLOCOCCUS AUREUS
58-113


PTRA2_STAAU
TRANSPOSASE
STAPHYLOCOCCUS AUREUS
11-38
58-113


PTRA3_ECOLI
TRANSPOSASE
ESCHERICHIA COLI
721-755


PTRA3_RHIME
TRANSPOSASE
RHIZOBIUMMELILOTI
179-206


PTRA3_STAAU
TRANSPOSASE
STAPHYLOCOCCUS AUREUS
33-60
68-95


PTRA4_ECOLI
TRANSPOSASE
ESCOOERICHIA COLI
181-208
308-340
720-754


PTRA6_ECOLI
TRANSPOSASE
ESCHERICH1A COLI
51-78


PTRA6_SHISO
TRANSPOSASE
SHIGELLA SONNEI
51-78
200-227
231-258


PTRA7_ECOLI
TRANSPOSASE
ESCHERICHIA COLI
729-756


PTRA9_MYCTU
PUTATIVE TRANSPOSASE
MYCOBACTEROUM TUBERCULOSIS
159-186


PTRAB_BACTB
IS231B PROBABLE TRANSPOSASE
BACILLUS THURINGIENSIS
281-308
419-446


PTRAC_BACTB
1523IC PROBABLE TRANSPOSASE
BACILLUS THURINGIENSIS
281-308
419-446


PTRAC_STAAU
TRANSPOSASE
STAPHYLOCOCCUS AUREUS
4-31
45-72


PTRAX_BACTB
1S231 PROBABLE TRANSPOSASE
BACILLUS THURINGIENSIS
281-308
419-446


PTRA_BACTU
TRANSPOSASE
BACILLUS THURINGIENSIS
93-127
509-539


PTRA_PSEAE
TRANSPOSASE
PSEUDOMONAS AERUGINOSA
127-154
721-755


PTRB1_ECOLI
TRAB PROTEIN
ESCHERICHIA COLI
113-143


PTRBF_ECOLI
TRBF PROTEIN
ESCHERICHIA COLI
12-39


PTRBI_ECOLI
TRBI PROTEIN
ESCHERICHIA COLI
70-97


PTRC1_ECOLI
TRAC-1 PROTEIN
ESCHERICHIA COLI
1006-





1058


PTRC2_ECOLI
TRAC-2 PROTEIN
ESCHERICHIA COLI
1102-





1149


PTRC3_ECOLI
TRAC-3 PROTEIN
ESCHERICHIA COLI
884-931


PTRD1_ECOLI
TRAD PROTEIN
ESCHERICHIA COLI
297-348


PTREA_ECOLI
PERIPLASMIC TREHALASE PRECURSOR
ESCHERICHIA COLI
362-403
477-508


PTREC_ECOLI
AMYLOTREHALASE
ESCHERICHIA COLI
280-307


PTRFA_ECOLI
TRFA TRANSCRIPTIONAL REPRESSOR PROTEIN
ESCHERICHIA COLI
5-32


PTRG1_ECOLI
TRAG PROTEIN
ESCHERICHIA COLI
61-88
630-657
831-858
865-895


PTRG5_ECOLI
TRAG PROTEIN
ESCHERICHIA COLI
196-223


PTRG6_ECOLI
TRAG PROTEIN
ESCHERICHIA COLI
195-222
518-545


PTRI1_ECOLI
TRAI PROTEIN
ESCHERICHIA COLI
155-209
597-624
887-914
1350-








1377


PTRI2_ECOLI
TRAI PROTEIN
ESCHERICHIA COLI
155-209
597-624
887-914
1350-








1377


PTRI5_ECOLI
TRAI PROTEIN
ESCHERICHIA COLI
47-74
328-371


PTRI4_ECOLI
TRAI PROTEIN
ESCHERICHIA COLI
36-63


PTRM8_ECOLI
TRAM PROTEIN
ESCHERICHIA COLI
5-32


PTRMA_ECOLI
TRNA (URACIL-5-)-METHYLTRANSFERASE
ESCHERICHIA COLI
107-137


PTRMD_ECOLI
TRNA (GUANINE-N1)-METHYLTRANSFERASE
ESCHERICHIA COLI
115-142
226-253


PTRPA_BACSU
TRYPTOPHAN SYNTHASE ALPHA CHAIN
BACILLUS SUBTILIS
220-247


PTRPA_CAUCR
TRYPTOPHAN SYNTHASE ALPHA CHAIN
CAULOBACTER CRESCENTUS
241-275


PTRPA_PSEAE
TRYPTOPHAN SYNTHASE ALPHA CHAIN
PSEUDOMONAS AERUGINOSA
176-203


PTRPB_ACICA
TRYPTOPHAN SYNTHASE BETA CHAIN
ACINETOBACTER CALCOACETICUS
79-113


PTRPB_BACSU
TRYPTOPHAN SYNTHASE BETA CHAIN
BACILLUS SUBTILIS
76-103
318-345


PTRPB_BRELA
TRYPTOPHAN SYNTHASE BETA CHAIN
BREVIBACTERIUM
172-199




LACTOFERMENTUM


PTRPB_LACCA
TRYPTOPHAN SYNTHASE BETA CHAIN
LACTOBACILLUS CASEI
83-117


PTRPB_LACLA
TRYPTOPHAN SYNTHASE BETA CHAIN
LACTOCOCCUS LACTIS
77-104
164-191


PTRPB_VIBPA
TRYPTOPHAN SYNTHASE BETA CHAIN
VIBRIO PARAHAEMOLYTICUS
56-83


PTRPC_BRELA
INDOLE-3-GLYCEROL PHOSPHATE
BREVIBACTERIUM
229-256



SYNTHASE
LACTOFERMENTUM


PTRPC_ECOLI
INDOLE-3-GLYCEROL PHOSPHATE
ESCHERICHIA COLI
205-232



SYNTHASE


PTRPC_LACLA
INDOLE-3-GLYCEROL PHOSPHATE
LACTOCOCCUS LACTIS
148-175



SYNTHASE


PTRPC_VIBPA
INDOLE-3-GLYCEROL PHOSPHATE
VIBRIO PARAHAEMOLYTICUS
346-376



SYNTHASE


PTRPD_ACICA
ANTHRANILATE PHOSPHORIBOSYL-
ACINETOBACTER CALCOACETICUS
223-250
260-294



TRANSFERASE


PTRPD_PSEAE
ANTHRANILATE PHOSPHORIBOSYL-
PSEUDOMONAS AERUGINOSA
205-232



TRANSFERASE


PTRPD_PSEPU
ANTHRANILATE PHOSPHORIBOSYL-
PSEUDOMONAS PUTIDA
205-232



TRANSFERASE


PTRPD_VIBPA
ANTHRANILATE PHOSPHORIBOSYL-
VIBRIO PARAHAEMOLYTICUS
2-29



TRANSFERASE


PTRPE_BACPU
ANTHRANILATE SYNTHASE
BACILLUS PUMILUS
33-60



COMPONENT I


PTRPE_CLOTM
ANTHRANILATE SYNTHASE
CLOSTRIDIUM THERMOCELLUM
165-226



COMPONENT I


PTRPE_LACLA
ANTHRANILATE SYNTHASE
LACTOCOCCUS LACTIS
142-191



COMPONENT I


PTRPE_LEPBI
ANTHRANILATE SYNTHASE
LEPTOSPIRA BIFLEXA
145-179



COMPONENT I


PTRPE_RHIME
ANTHRANILATE SYNTHASE
RHIZOBIUM MELILOTI
139-166


PTRPE_SALTY
ANTHRANILATE SYNTHASE
SALMONELLA TYPHIMURIUM
191-218



COMPONENT I


PTRPE_SULSO
ANTHRANILATE SYNTHASE
SULFOLOBUS SOLFATARICUS
143-183
298-328



COMPONENT I


PTRPE_VIBPA
ANTHRANILATE SYNTHASE
VIBRIO PARAHAEMOLYTICUS
9-36
54-81



COMPONENT I


PTRPG_ACICA
ANTHRANILATE SYNTHASE
ACINETOBACTER CALCOACETICUS
12-39



COMPONENT II


PTRPG_AZOBR
ANTHRANILATE SYNTHASE
AZOSPIRILLUM BRASILENSE
4-31



COMPONENT II


PTRPG_ECOLI
ANTHRANILATE SYNTHASE
ESCHERICHIA COLI
5-32



COMPONENT II


PTRPG_LACLA
ANTHRANILATE SYNTHASE
LACTOCOCCUS LACTIS
4-31



COMPONENT II


PTRPG_PSEAE
ANTHRANILATE SYNTHASE
PSEUDOMONAS AERUGINOSA
12-39



COMPONENT II


PTRPG_SALTY
ANTHRANILATE SYNTHASE
SALMONELLA TYPHIMURIUM
5-32



COMPONENT II


PTRPG_SERMA
RANILATE SYNTHASE COMPONENT II
SERRATIA MARCESCENS
9-43


PTRPO_SHIDY
ANTHRANILATE SYNTHASE
SHIGELLA DYSENTERIAE
5-32



COMPONENT II


PTRPO_PSEAE
PUTATIVE TPANSCRIPTIONAL
PSEUDOMONAS AERUGINOSA
147-174



REGULATOR


PTRS2_ECOLI
TRAS PROTEIN
ESCRERICHIA COLI
85-119


PTRT3_ECOLI
RESISTANCE PROTEIN PRECURSOR
ESCHERICHIA COLI
184-221


PTRY1_SALTY
TRAY PROTEIN
SALMONELLA TYPHIMURIUM
30-57


PTRYP_STRGR
TRYPSIN PRECURSOR
STREPTOMYCES GRISEUS
80-107


PTSR_STRAZ
RRNA METHYLTRANSFERASE
STREPTOMYCES AZUREUS
126-153


PTSST_STAAU
TOXIN SHOCK SYNDROME TOXIN-1
STAPHYLOCOCCUS AUREUS
29-63
102-129



PRECURSOR


PTSX_ECOLI
CHANNEL-FORMING PROTEIN TSX
ESCHERICHIA COLI
225-252



PRECURSOR


PTTK_ECOLI
HYPOTHETICAL 24.3 KD PROTEIN
ESCHERICHIA COLI
81-115


PTUS_ECOLI
SITE-BINDING PROTEIN
ESCHERICHIA COLI
57-91
107-134


PTYCA_BACBR
TYROCIDINE SYNTHETASE I
BACILLUS BREVIS
117-147
534-561
1019-







1051


PTYFI_TREPE
ANTIGEN TYF I
TREPONEMA PERTENUE
106-143


PTYRA_BACSU
POSSIBLE PREPHENATE
BACILLUS SUBTILIS
244-271
312-342



DEHYDROGENASE


PTYRA_ECOLI
CHORISMATE MUIASE
ESCHERICHIA COLI
329-370


PTYRR_ECOLI
TRANSCRIPTIONAL REGULATORY
ESCHERICHIA COLI
483-510



PROTEIN TYRR


PTYSY_LACCA
THYMIDYLATE SYNTHASE
LACTOBACILLUS CASEI
139-173


PTYSY_LACLA
THYMIDYLATE SYNTHASE
LACTOCOCCUS LACTIS
75-109


PTYSY_STAAU
THYMIDYLATE SYNTHASE
STAPHYLOCOCCUS AURBUS
69-96


PUHPB_ECOLI
SENSOR PROTEIN UMPB
ESCHERICHIA COLI
276-303
316-343


PUMPB_SALTY
SENSOR PROTEIN UHPB
SALMONELLA TYPHIMURIUM
276-303
316-343


PUMUC_SALTY
UMUC PROTEIN
SALMONELLA TYPHIMURIUM
204-231


PUPP_ECOLI
URACIL PHOSPHORIBOSYLTRANSFERASE
ESCHERICHIA COLI
30-57


PURAA_ECOLI
URACIL PERMEASE
ESCHERICHIA COLI
350-384


PUREI_HELPY
UREASE ALPHA SUBUNIT
HELICOBACTER PYLORI
15-42


PUREI_PROMI
UREASE ALPHA SUBUNIT
PROTEUS MIRABILIS
72-99


PUREI_PROVU
UREASE ALPHA SUBUNIT
PROTEUS VULGAPIS
72-99


PUREI_UREUR
UREASE ALPHA SUBUNIT
UREAPLASMA UREALYTICUM
13-40
483-517


PURE2_HELPY
UREASE BETA SUBUNIT
HELICOBACTER PYLORI
62-99


PURED_HELPY
UREASE OPERON URED PROTEIN
HELICOBACTER PYLOPI
17-44


PUREE_PROMI
UREASE ACCESSORY PROTEIN UREE
PROTEUS MIRABILIS
57-84


PUREF_KLEAE
UREASE ACCESSORY PROTEIN UREF
KLEBSIELLA AEROGENES
20-47



PRECURSOR


PUS45_LACLA
SECRETED 45 KD PROTEIN PRECURSOR
LACTOCOCCUS LACTIS
44-98
150-223
276-303


PUSHA_ECOLI
P-SUGAR HYDROLASE PRECURSOR
ESCHERICHIA COLI
56-83


PUSHA_SALTY
SILENT PROTEIN USHA(0) PRECURSOR
SALMONELLA TYPHIMURIUM
56-83


PUVRA_ECOLI
ECOLI EXCINUCLEASE ABC SUBUNIT A
ESCHERICHIA COLI
527-534
871-898


PUVRA_MICLU
MICLU EXCINUCLEASE ABC SUBUNIT A
MICROCOCCUS LUTEUS
579-606
619-646
684-718
922-949


PUVRA_PARDE
PARDE EXCINUCLEASE ABC SUBUNIT A
PARACOCCUS DENITRIPICANS
33-60


PUVRC_BACSU
EXCINUCLEASE ABC SUBUNIT C
BACILLUS SUBTILIS
342-372
511-538


PUVRC_ECOLI
EXCINUCLEASE ABC SUBUNIT C
ESCHERICHIA COLI
37-64
332-362


PUVRD_ECOLI
HELICASE II
ESCHERICHIA COLI
280-307


PVANA_ENTFC
VANCOMYCIN RESISTANCE PROTEIN
ENTEROCOCCUS FAECIUM
182-209



VANA


PVANC_ENTGA
VANCOMYCIN RESISTANCE PROTEIN
ENTEROCOCCUS GALLINARUM
177-211



VANC


PVIB4_AGRT5
VIRB4 PROTEIN PRECURSOR
AGROBACTERIUM TUMEFACIENS
138-172


PVIB6_AGRT5
VIRB6 PROTEIN
AGROBACTERIUM TUMEFACIENS
190-227


PVIB6_AGRT6
VIRB6 PROTEIN
AGROBACTERIUM TUMEFACIENS
190-227


PVIO6_AGRT9
VIRB6 PROTEIN
AGROBACTERIUM TUMEFACIENS
190-227


PVIBX_AGRT5
VIRB10 PROTEIN
AGROBACTERIUM TUMEPACIENS
32-59
212-239


PVIBX_AGRT6
VIRB10 PROTEIN
AGROBACTERIUM TUMEPACIENS
32-59
211-238


PVIBX_AGRT9
VIRB10 PROTEIN
AGROBACTERIUM TUMEFACIENS
32-59
212-239


PVICI_AGRRA
VIRC1 PROTEIN
AGROBACTERIUM RHIZOGENES TUMEFACIENS
81-108


PVICI_AGRTS
VIRC1 PROTEIN
AGROBACTERIUM TUMEFACIENS
81-108


PVICI_AGRT6
VIRC1 PROTEIN
AGROBACTERIUM TUMEFACIENS
81-108


PVID3_AGRGA
VIRD3 PROTEIN
AGROBACTERIUM RHIZOGENES
149-176
265-292


PVIRA_AGRG5
WIDE HOST RANGE (WHR) VIRA PROTEIN
AGROBACTERIUM TUMEPACIENS
42-76
113-147
657-684


PVIRA_AGRT6
WIDE HOST RANGE (WHR) VIRA PROTEIN
AGROBACTERIUM TUMEFACIENS
42-69
84-125
653-680


PVIRA_AGRR9
WIDE HOST RANGE (WHR) VIRA PROTEIN
AGROBACTERIUM TUMEFACIENS
42-69
84-125
653-680


PVIRB_SHIFL
VIRB TRANSCRIPTIONAL ACTIVATOR
SHIGELLA
FLEXNERI
37-71
107-134
187-214
252-291


PVIRF_YERRN
VIRULENCE REGULON TRANSACTIVATOR
YERSINIA ENTEROCOLITICA
16-46


PVIRG_AGRRA
VIRG REGULATORY PROTEIN
AGROBACTERIUM RHIZOGENES
34-61


PVIRL_AGRT6
LIMITED HOST RANGE (LHR) VIRA PROTE
AGROBACTERIUM TUMEFACIENS
106-157


PVISC_ECOLI
VISC PROTEIN
ESCHERICHIA COLI
47-74


PVLPA_MYCHR
VARIANT SURFACE ANTIGEN A PRECURSOR
MYCOPLASMA HYORHINIS
74-112


PVM03_BORHE
OUTER MEMBRANE LIPOPROTEIN 3
BORRELIA HERMSII
54-81



PRECURSOR


PVM07_BORHE
OUTER MEMBRANE LIPOPROTEIN 7
BORRELIA HERMSII
332-359



PRECURSOR


PVM21_BORHE
OUTER MEMBRANE LIPOPROTEIN 21
BORRELIA HERMSII
330-357



PRECURSOR


PVM24_BORHE
OUTER MEMBRANE LIPOPROTEIN 24
BORRELIA HERMSII
47-143



PRECURSOR


PVM25_BORHE
OUTER MEMBRANE LIPOPROTEIN 25
BORRELIA HERMSII
315-356



PRECURSOR


PVNFA_AZOVI
NITROGEN FIXATION PROTEIN VNFA
AZOTOBACTER VINELANDII
158-188
218-245


PVNFK_AZOCH
NITROGENASE VANADIUM-IRON PROTEIN
AZOTOBACTER CHROOCOCCUM MCD I
68-95


PVNFK_AZOVI
NITROGENASE VANADIUM-IRON PROTEIN
AZOTOBACTER VINELANDII
68-95
372-403


PVRP2_SALCH
65 KD VIRULENCE PROTEIN
SALMONELLA CHOLERAE-SUIS
509-536


PVRP2_SALDU
65 KD VIRULENCE PROTEIN
SALMONELLA DUBLIN
511-538


PVSDE_SALOU
VIRULENCE PROTEIN VSDE
SALMONELLA DUBLIN
3-36


PVVHB_VIBVU
CYTOLYSIN SECRETION PROTEIN
VIBRIO VULNIPICUS
30-75


PWAPA_STRMU
WALL-ASSOCIATED PROTEIN PRECURSOR
STREPTOCOCCUS MUTANS
4-41
313-386


PWRBA_ECOLI
TRP REPRESSOR BINDING PROTEIN
ESCHERICHIA COLI
89-116


PXI91_ECOLI
X POLYPEPTIDE
ESCHERICHIA COLI
104-131


PX192_ECOLI
X POLYPEPTIDE
ESCHERICHIA COLI
104-131


PX193_ECOLI
X POLYPEPTIDE
ESCHERICHIA COLI
104-131


PXISA_ANASP
EXCISASEA
ANABAENA SP
4-31
89-116
135-162


PXPRB_ECOLI
POSSIBLE INTEGRASE/
ESCRERICHIA COLI
268-295



RECOMBINASE XPRB


PXYLA_STAXY
XYLOSE ISOMERASE
STAPHYLOCOCCUS XYLOSUS
411-438


PXYLK_XLEAE
XYLULOSE KINASE
KLEBSIELLA AEROGENES
2-29


PXYLK_LACPE
XYLULOSE KINASE
LACTO BACILLUS PENTOSUS
52-79
211-238
260-287


PXYLK_STAXY
XYLULOSE KINASE
STAPHYLOCOCCUS XYLOSUS
4-31
96-130
209-236
246-273


PXYLR_BACSU
XYLOSE REPRESSOR
BACILLUS SUBTILIS
75-102
260-287


PXYLR_LACPE
XYLOSE REPRESSOR
LACTO BACILLUS PENTOSUS
262-289


PXYLR_STAXY
XYLOSE REPRESSOR
STAPHYLOCOCCUS XYLOSUS
20-64
101-158
181-215
221-255
274-301


PXYLZ_PSEPU
ELECTRON TRANSPER COMPONENT
PSEUDOMONAS PUTIDA
51-78
104-131


PXYN4_CALSA
PUTATIVE ENDO-I-4-BETA-XYLANASE
CALDOCELLUM SACCHAROLYTICUM
198-225


PXYNA_BACCI
O-1, 4-BETA-XYLANASE PRECURSOR
BACILLUS CIRCULANS
47-74


PXYNA_BACS5
ENDO-1, 4-BETA-XYLANASE PRECURSOR
BACILLUS SP
173-200


PXYNA_BACSU
ENDO-1, 4-BETA-XYLANASE PRECURSOR
BACILLUS SUBTILIS
47-74


PXYNA_CALSA
ENDO-1, 4-BETA-XYLANASE PRECURSOR
CALDOCELLUM SACCHAROLYTICUM
132-159
226-256


PXYNA_PSEFL
ENDO-I, 4-BETA-XYLANASE PRECURSOR
PSEUDOMONAS FLUORESCENS
33-82


PXYNB_BACPU
BETA-XYLOSIDASE
BACILLUS PUMILUS
459-486


PXYNB_CALSA
BETA-XYLOSIDASE
CALDOCELLUM SACCIIAROLYTICUM
440-474


PXYNB_PSEFL
ENDO-1, 4-BETA-XYLANASE
PSEUDOMONAS FLUORESCENS
51-78
251-278
317-344
475-502



PRECURSOR


PXYNC_PSEFL
ALPHA-L-ARABINOFURANOSIDASE
PSEUDOMONAS FLUORESCENS
51-78
251-278



C PRECURSOR


PXYNC_STRLI
ENDO-1, 4-BETA-XYLANASE C
STREPTOMYCES LIVDANS
183-210



PRECURSOR


PYI4K_HALMO
HYPOTHETICAL 14.9 KD PROTEIN
HALOCOCCUS MORRHUAE
56-83


PY23K_STROR
HYPOTHETICAL 23.1 KD PROTEIN
STREPTOCOCCUS ORALIS
78-105


PY36K_METSM
HYPOTHUTICAL 36.7 KD PROTEIN
METHANOOREVIBACTIZR SMITHII
128-162
172-218


PYAAC_ECOLI
HYPOTHETICAL 34.6 KD PROTEIN
ESCHERICHIA COLI
271-298


PYAAC_PSEFL
HYPOTHETICAL 33.9 KD PROTEIN
PSEUDOMONAS FLUORESCENS
274-301


PYAAM_ECOLI
HYPOTHETICAL 59.1 KD PROTEIN
ESCHERICHIA COLI
45-72


PYAAP_ECOLI
HYPOTHETICAL 56.6 KD PROTEIN
ESCHERICHIA COLI
352-379


PYAAQ_ECOLI
HYPOTHETICAL 28.5 KD PROTEIN
ESCHERICHIA COLI
155-182


PYABC_ECOLI
HYPOTHETICAL 34.9 KD PROTEIN
ESCHERICHIA COLI
131-158


PYABG_ECOLI
HYPOTHETICAL 89.7 KD PROTEIN
ESCHERICHIA COLI
446-480
627-654


PYABN_ECOLI
HYPOTHETICAL 63.9 KD PROTEIN
ESCHERICHIA COLI
428-455


PYAC3_PSEAE
HYPOTHETICAL 23.9 KD PROTEIN
PSEUDOMONAS AERUGINOSA
48-15
150-177


PYAD2_CLOAB
HYPOTHETICAL 21.6 KD PROTEIN
CLOSTRIDIUM ACETODUTYLICUM
75-309
114-144


PYAD5_CLOAB
HYPOTHETICAL 36.9 KD PROTEIN
CLOSTRIDIUM ACETOIIUTVLICUM
132-159
165-196
210-237


PYAD6_CLOAB
HYPOTHETICAL PROTEIN
CLOSTRIDIUM ACETOISUTYLICUNI
21-55


PYADA_YEREN
INVASIN PRECURSOR
YERSINIA ENTEROCOLITICA
196-230
247-274
318-381


PYADA_YERPS
INVASIN PRECURSOR
YERSINIA PSEUDOTUIBERCULOSIS
255-238
297-360


PYADC_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
13-40
101-131


PYAEA_RICRI
17 KD PROTEIN
RICKETTSIA RICKETTSII
107-134


PYAFB_ECOLI
HYPOTHETICAL 29.4 KD PROTEIN
ESCHERICHIA COLI
221-248


PYAFD_ECOLI
HYPOTHETICAL 29.1 KD PROTEIN
ESCHERICHIA COLI
34-71


PYAFE_ECOLI
HYPOTHETICAL 23.0 KD PROTEIN
ESCHERICHIA COLI
123-150


PYAIB_ESCFE
HYPOTHETICAL PROTEIN
ESCHERICHIA FERGUSONI
2-35


PYAMI_SALTY
PUTATIVE AMIDASE
SALMONELLA TYPHIMURIUM
73-100


PYATI_SYNY3
HYPOTHETICAL 13.0 KD PROTEIN
SYNECHOCYSTIS SP
26-60


PYATP_MYCLE
HYPO PROTEIN PUTATIVE ATP OPERON
MYCOBACTERIUM LEPRAE
23-57
91-158
511-538


PYATR_BACFI
HYPOL ATP-BINDINO TRANSPORT PROTEIN
BACILLUS PIRMUS
211-228


PYATS_MYCCA
HYPOTHETICAL PROTEIN
MYCOPLASMA GALLISEPTICUNI
7-41


PYATU_MYCGA
HYPOTE4ETICAL PROTEIN
MYCOPLASMA GALLISEPTICUNI
29-56
60-87


PYAVS_XANCV
HYPOTHETICAL 50 KD AVIRULENCE
XANTEIOMONAS CAMPESTRIS
68-98
199-226



PROTEIN


PYBAH_ECOLI
HYPOTHETICAL 24.8 KD PROTEIN
ESCHERICHIA COLE
49-79


PYBBA_ECOLI
HYE-OTHETICAL ARC TRANSPORTER
ESCHERICHIA COLI
6-69


PYBED_ECOLI
HYPOTHETICAL 9.8 KD PROTEIN
ESCHERICHIA COLE
51-82


PYBID_ECOLI
HYPOTHETICAL 14.1 KD PROTEIN
ESCHERICHEA COLE
97-124


PYCAE_ECOLI
HYPOTHETICAL 24.5 KD PROTEIN
ESCHERICHIA COLE
34-61


PYCBA_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLE
38-65


PYCBL_BACUN
HYPOTHETICAL 17.3 KD PROTEIN
BACTEROIDES UNIFORMIS
66-100


PYCEA_BACLA
HYPOTHETICAL PROTEIN
BACILLUS LAUTUS
111-138


PYCFC_ECOLI
HYPOTHETICAL 22.9 KD PROTEIN
ESCHERICHIA COLE
52-79


PYCHR_ALCEU
HYPOTHETICAL PROTEIN
ALCALEGENES EUTROPHUS
21-48


PYCIB_ECOLI
HYPOTHETICAL 20.8 KD PROTEIN
ESCHERICHIA COLE
16-43


PYCIF_ECOLI
18.6 KD PROTEIN
ESCHERICHIA COLE
7-68
134-166


PYCIK_ECOLI
HYPOTHETICAL PROTEIN
ESCHERECHEA COLE
35-62


PYCLI_ECOLI
HYPOTHETICAL 43.3 KD PROTEIN
ESCHERICHIA COLI
54-81


PYCP3_SYNPY
HYPOTHETICAL 29.3 KD PROTEIN
SYNECHOCOCCUS SP
194-221


PYCP3_SYNY3
HYPOTHETECAL 28.0 KD PROTEIN
SYNECHOCYSTES SP
7-34
120-154


PYCP5_SYNY3
HYPOTHETICAL 39.5 KD PROTEIN
SYNECHOCYSTIS SP
277-308


PYCPG_MASLA
HYPOTHETICAL PROTEIN
MASTEGOCLADUS LAMINOSUS
2-29


PYCPY_PSEA9
HYPO PHYCOCYANIN OPERON PROTEIN
PSEUDANADAENA SP
380-407


PYCR2_BACTK
HYPOTHETICAL 29.1 KD PROTEIN
BACILLUS THURINOIENSIS
42-74
153-180


PYCS5_ECOLE
HYPOTHETICAL PROTEIN PRECURSOR
ESCHERICHEA COLE
32-59


PYCWS_BACSU
HYPOTHETICAL PROTEIN
BACILLUS SUISTILIS
3-30
59-86


PYD3M_HERAU
HYPOTHETICAL 68.4 KD PROTEEN
HERPETOSIPHON AURANTIACUS
12-39
151-178
360-416


PYDBA_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
32-66
117-144
163-216
233-267
295-329
458-485
676-717
1136-
1499-












1163
1530


PYDBD_ECOLI
HYPOThETICAL PROTEIN
ESCHERICHIA COLI
80-107


PYDDB_ECOLI
HYPOTHETICAL 86.7 KD PROTEIN
ESCHERICHIA COLI
606-641
683-714
126-753


PYDDC_ECOLI
HYPOTHETICAL 80.8 KD PROTEIN
ESCHERICHIA COLI
373-400
421-452
621-648


PYDDD_ECOLI
HYPOTHETICAL 24.1 KD PROTEIN
ESCHERICHIA COLI
133-174


PYDEH_ECOLI
HYPOTHETICAL 20.5 KD PROTEIN
ESCHERICHIA COLI
96-130


PYDEJ_ECOLI
HYPOTHETICAL 18.3 KD PROTEIN
ESCHERICHIA COLI
4-38


PYDEK_ECOLI
HYPOTHETICAL 65.5 KD PROTEIN
ESCHERICHIA COLI
333-360
524-551
565-592


PYDNN_BORBU
HYPOTHETICAL 11.2 KD PROTEIN
BORRELIA BURODORFERI
6-36


PYDO1_SULSO
HYPOTHETICAL 14.7 KD PROTEIN
SULFOLOBUS SOLFATARICUS
17-58
71-103


PYDO3_SULSO
HYPOTHETICAL 16.9 KD PROTEIN
SULFOLOBUS SOLFATARICUS
11-38


PYEBA_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
93-120


PYEBG_ECOLI
HYPOTHETICAL 10.7 KD PROTEIN
ESCHERICHIA COLI
50-77


PYEEE_ECOLI
HYPOTHETICAL 38.1 KD PROTEIN
ESCHERICHIA COLI
43-70


PYEEF_ECOLI
HYPO 49.8 KD TRANSPORT PROTEIN
ESCHER1CHIA COLI
147-174


PYEGA_ECOLI
HYPOTHETICAL IN DCD 3REGION
ESCHERICHIA COLI
145-172


PYEHA_ECOLI
HYPOTHETICAL 36.9 KD PROTEIN
ESCHERICHIA COLI
69-106
283-310


PYEHB_ECOLI
HTPOTHETICAL 92.3 KD PROTEIN
ESCHERICHIA COLI
151-178
501-545


PYEHD_ECOLI
HYPOTHETICAL 19.1 KD PROTEIN
ESCHERICHEA COLI
96-123


PYEHF_ECOLI
HYPOTITICAL 141.0 KD PROTEIN
ESCHERICHIA COLI
543-570


PYEHI_ECOLI
HYPOTHETICAL 138.1 KD PROTEIN
ESCHERICHIA COLI
35-70
102-129


PYEHU_ECOLI
HYPOTHETICAL 62.1 KD PROTEIN
ESCHERICHIA COLI
326-353


PYEIC_ECOLI
HYPOTHETICAL 33.6 KD PROTEIN
ESCHERICHIA COLI
46-80


PYEIF_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
61-88


PYEIJ_ECOLI
HYPOTHETICAL 43.4 KD PROTEIN
ESCHERICHIA COLI
15-42


PYEJA_ECOLI
HYPOTHETICAL ABC TRANSPORTER
ESCHERICHIA COLI
83-110


PYEJF_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
453-480


PYEJO_ECOLI
HYPOTHETICAL 99.2 KD PROTEIN
ESCHERICHIA COLI
399-433


PYFHD_ECOLI
HYPOTHETICAL 40.6 KD PROTEIN
ESCHERICHIA COLI
175-202


PYFU2_ECOLI
HYPOTHETICAL 30.6 KD PROTEIN
BACILLUS STEAROTHERMOPHILUS
133-160


PYFXK_BRAJA
HYPOTHETICAL PROTEIN
BRADYRHIZOBIUM JAPONICUM
109-130


PYGAP_BACME
HYPOTHETICAL 37.7 KD PROTEIN
BACILLUS MEGATERIUM
40-67


PYGFD_ECOLI
HYPOTHETICAL 29.4 KD PROTEIN
ESCHERICHIA COLI
214-241


PYGGB_ECOLI
HYPOTHETICAL 30.9 KD PROTEIN
ESCHERICHIA COLI
225-232


PYGGG_ECOLI
HYPOTHETICAL 31.3 KD PROTEIN
ESCHERICHIA COLI
209-236


PYGI2_BACTU
HYPOTHETICAL 22.8 KD PROTEIN
BACILLUS THURINGIENSIS
26-61


PYGI2_PSEPU
HYPOTHETICAL 32.4 KD PROTEIN
PSEUDOMONAS PUTIDA
145-172


PYGIF_ECOLI
HYPOTHETICAL 48.4 KD PROTEIN
ESCHERICHIA COLI
223-264


PYGL4_BACST
HYPOTHETICAL 35.3 KD PROTEIN
BACILLUS STEAROTHERMOPHILUS
6-33


PYGL5_BACST
HYPOTHETICAL PROTEIN
BACILLUS STEAROTHERMOPHILUS
182-209


PYGLN_BACCE
HYPOTHETICAL 13 KD PROTEIN
BACILLUS CEREUS
79-124


PYGRD_BACSU
HYPOTHETICAL PROTEIN
BACILLUS SUBTILIS
20-47


PYGRE_BACSU
HYPOTHETICAL 17.1 KD PROTEIN
BACILLUS SUBTILIS
84-111


PYGRP_BACSU
HYPOTHETICAL 39.0 KD PROTEIN
BACILLUS SUBTILIS
98-125


PYGRP_CLOAB
HYPOTHETICAL 38.8 KD PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
160-210


PYGT2_STRMU
HYPOTHETICAL PROTEIN 2
STREPTOCOCCUS MUTANS
4-40
110-138
235-262


PYHAB_ECOLI
HYPOTHETICAL 20.6 KD PROTEIN
ESCHERICHIA COLI
20-66


PYHAC_ECOLI
HYPOTHETICAL 43.2 KD PROTEIN
ESCHERICHIA COLI
69-96


PYHAF_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
44-71
138-163


PYHBG_ECOLI
PROBABLE ABC TRANSPORTER
ESCHERICHIA COLI
176-203


PYHBG_PSEPU
PROBABLE ABC TRANSPORTER
PSEUDOMONAS PUTIDA
74-101
106-133
147-174


PYHBG_THIFE
PROBABLE ABC TRANSPORTER
THIO BACILLUS FERROOXIDANS
113-140


PYHDF_ECOLI
HYPOTHETICAL 53.4 KD PROTEIN
ESCHERICHIA COLI
267-297


PYHEM_BACSU
HYPOTHETICAL 32.0 KD PROTEIN
BACILLUS SUBTILIS
222-253


PYHET_ANASP
HYPOTHETICAL PROTEIN
ANABAENA SP
72-99


PYHHA_ECOLI
HYPOTHETICAL 16.6 KD PROTEIN
ESCHERICHIA COLI
56-84


PYHHG_ECOLI
HYPOThETICAL 15.1 KD PROTEIN
ESCHERICHIA COLI
43-77


PYHHH_ECOLI
HYPOTHETICAL 14.5 KD PROTEIN
ESCHERICHIA COLI
43-73


PYH11_LACLA
HYPOTHETICAL PROTEIN
LACTOCOCCUS LACTIS
167-194


PYNI3_LACLA
HYPOTHETICAL 38.0 KD PROTEIN
LACTOCOCCUS LACTIS
90-124
132-139


PYHI6_LACLA
HYPOTHETICAL 30.7 KD PROTEIN
LACTOCOCCUS LACTIS
92-148


PYHI8_LACLA
HYPOTHETICAL 30.7 KD PROTEIN
LACTOCOCCUS LACTIS
77-104
156-183


PYHLB_STAAU
HYPOTHERICAL PROTEIN
STAPHYLOCOCCUS AUREUS
18-67


PYHLB_VIBCH
HYPOTHERICAL 18.3 KD PROTEIN
VIBRIO CHOLERAE
99-126


PYHMF_METFE
HYPOTHETICAL 32.2 KD PROTEIN
METHAI4OTHERMUS FERVIDUS
106-133


PYHSI_CLOAB
HYPOTHETICAL 11.0 KD PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
41-85


PYHSA_CLOAB
HYPOTHETICAL 20.6 KD PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
98-125


PYHSC_CLOAB
HYPOTHETICAL 42.4 KD PROTEIN
CLOSTRIDIUM ACETOBUTYLICUM
25-52
208-253
276-310


PYHVI_LACHE
HYPOTHETICAL PROTEIN
LACYO BACILLUS VETICUS
93-120
127-154


PYHYA_PSESN
HYPOTHETICAL PROTEIN
PSEUDOMONAS SP
217-266


PYHI_HALHA
HYPOTHETICAL 38.0 KD PROTEIN
HALOBACTERIUM HALOBIUM
245-272


PY132_MYCTU
HYPOTHETICAL 6.6 KD PROTEIN
MYCOBACTERIUM TUBERCULOSIS
19-46


PY142_PSEAM
HYPOTHETICAL 42.6 KD PROTEIN
PSEUDOMONAS AMYLODERAMOSA
9-36


PY148_METSM
HYPOTHETICAL 48.3 KD PROTEIN
METHANOBREVIBACTER SMITHII
73-109
154-184
338-365


PYI52_HALHA
HYPOTHETICAL 31 KD PROTEIN
HALOBACTERIUM HALOBIUM
86-113


PYIBB_ECOLI
HYPOTHETICAL 34.0 KD PROTEIN
ESCHERICHIA COLI
202-239


PYIBD_ECOLI
HYPOTHETICAL PROTEIN
ESCHERICHIA COLI
9-43


PYIBF_ECOLI
HYPOTHETICAL 22.6 KD PROTEIN
ESCHERICHIA COLI
131-158


PYIDE_ECOLI
HYPOTHETICAL 58.9KD PROTEIN
ESCHERICHIA COLI
86-113
182-209
277-304


PYIDI_ECOLI
HYPOTHETICAL 15.7 KD PROTEIN
ESCHERICHIA COLI
56-83


PYIDK_ECOLI
HYPOTHETICAL 62.1 KD PROTEIN
ESCHERICHIA COLI
2-39


PYIDP_ECOLI
HYPOTHETICAL 27.3 KD PROTEIN
ESCHERICH1A COLI
63-97


PYIBA_ECOLI
HYPOTHETICAL 49.2 KD PROTEIN
ESCHERICH1A COLI
221-248


PYJEC_ECOLI
HYPOTHETICAL 60.6 KD PROTEIN
ESCHERICHIA COLI
20-58
270-297


PYIEC_ERWCH
HYPOTHETICAL PROTEIN
ERWINIA CHRYSANTHEMI
22-67


PYIED_ECOLI
HYPOTHETICAL 34.8 KD PROTEIN
ESCHERICHIA COLI
86-120


PYIEG_ECOLI
HYPOTHETICAL 46.9 KD PROTEIN
ESCHERICHIA COLI
293-327


PYIEH_ECOLI
HYPOTHETICAL 24.7 KD PROTEIN
ESCHERICHIA COLI
51-78


PYIHB_ECOLI
HYPOThETICAL 21.2 KD PROTEIN
ESCHERICHIA COLI
13-40


PYIHD_ECOLI
HYPOTHETICAL 10.3 KD PROTEIN
ESCHERICHIA COLI
28-55


PYIHY_ECOLI
HYPOTHETICAL 54.1 KD PROTEIN
ESCHERICHIA COLI
272-306


PYIHI_ECOLI
HYPOTHETICAL 19.1 KD PROTEIN
ESCHERICHIA COLI
112-139


PYIHK_ECOLI
HYPOTHETICAL 65.4 KD PROTEIN
ESCHERICHIA COLI
4-31


PYIHM_ECOLI
HYPOTHETICAL 36.9 KO PROTEIN
ESCHERICHIA COLI 83-110
120-154
297-324


PYIHO_ECOLI
HYPOTHETICAL 81.8 KD PROTEIN
ESCHERICHIA COLI
612-646


PYIHP_ECOLI
HYPOTHETICAL 53.1 KD PROTEIN
ESCHERICHIA COLI
357-384


PYIHV_ECOLI
HYPOTHETICAL 31.9 KD PROTEIN
ESCHERICHIA COLI
72-99


PYIHX_ECOLI
HYPOTHETICAL 23.5 KO PROTEIN
ESCHERICHIA COLI
9-36


PYIHE_ECOLI
HYPOTHETICAL 15.9 KD PROTEIN
ESCHERICHIA COLI
6-33


PYHP_ECOLI
HYPOTHETICAL 32.9 KD PROTEIN
ESCHERICHIA COLI
22-63


PYIIU_ECOLI
HYPOTHETICAL 9.6 KD PROTEIN
ESCHERICHIA COLI
28-71


PYIJC_ECOLI
HYPOTHETICAL 26.6 KD PROTEIN
ESCHERICHIA COLI
136-163


PYIJH_ECOLI
HYPOTHETICAL 78.3 KD PROTEIN
ESCHERICHIA COLI
225-263


PYIJK_ECOLI
HYPOTHETICAL 11.2 KD PROTEIN
ESCHERICHIA COLI
26-53


PYIJO_ECOLI
HYPOTHETICAL 32.1 KO PROTEIN
ESCHERICHIA COLI
214-241


PYHP_ECOLI
HYPOTHETICAL 66.6 KD PROTEIN
ESCHERICHIA COLI
110-137
419-446


PYINL_LISMO
HYPOTHETICAL 26.8 KD PROTEIN
LISTERIA MONOCYTOGENES
7-34


PYISI_SHISO
INSERTION ELEMENT 1S600
SHIGELLA SONNEI
125-152


PYISI_STRCO
HYPOTHETICAL 43.6 KD PROTEIN
STREPTOMYCES COELICOLOR
125-152


PYIS3_SHISO
INSERTION ELEMENT 1S629
SHIGELLA SONNEI
66-100


PYISP_BACSP
HYPOTHETICAL 42.1 KD PROTEIN
BACILLUS SP
312-339


PYJAG_ECOLI
HYPOTHETICAL 22.6 KD PROTEIN
ESCHERICHIA COLI
51-78


PYJAI_ECOLI
HYPOTHETICAL 20.4 KD PROTEIN
ESCHERICHIA COLI
88-122


PYJBH_ECOLI
HYPOTHETICAL 78.5 KD PROTEIN
ESCHERICHIA COLI
93-120


PYJBL_ECOLI
HYPOTHETICAL 9.7 KD PROTEIN
ESCHERICHIA COLI
30-57


PYJBM_ECOLI
HYPOTHETICAL 26.7 KD PROTEIN
ESCHERICHIA COLI
112-149


PYJBQ_ECOLI
HYPOTHETICAL 13.7 KD PROTEIN
ESCHERICHIA COLI
2-29


PYJCC_ECOLI
HYPOTHETICAL 60.8 KD PROTEIN
ESCHERICHIA COLI
38-65
414-441
451-492


PYJIA_ECOLI
HYPOTHETICAL 17.5 KD PROTEIN PRECURSOR
ESCHERICHIA COLI
35-69
88-129


PYKAB_BACFI
HYPOTHETICAL 48.8 KD PROTEIN
BACILLUS FIRMUS
321-355


PYLAI_LACAC
HYPOTHETICAL PROTEIN
LACTO BACILLUS ACIDOPHILUS
47-74


PYLA2_LACAC
HYPOTHETICAL 14.5 KD PROTEIN
LACTO BACILLUS ACIDOPHILUS
15-42


PYLA3_LACAC
HYPOTHETICAL 14.4 KD PROTEIN
LACTO BACILLUS ACIDOPHILUS
47-74


PYLAC_SULSO
HYPOTHETICAL 24.4 KD PROTEIN
SULFOLOBUS SOLFATAJUCUS
23-50


PYLP3_PSEPU
HYPOTHETICAL 44.7 KD PROTEIN
PSEUDOMONAS PUTIDA 186-213
314-34 I


PYLPA_YEREN
YLPA LIPOPROTEIN PRECURSOR
YERSINIA ENTEROCOLITICA
184-221


PYLT3_ANAVA
HYPOTHETICAL 22.6 KD PROTEIN
ANABAENA VARIADILIS
172-199


PYLUD_LACLA
HYPOTHETICAL 29.7 KD PROTEIN
LACTOCOCCUS LACTIS
35-70


PYME2_BACSU
HYPOTHETICAL 35.3 KD PROTEIN
BACILLUS SUBTILIS
52-79


PYMG2_MYCGE
HYPOTHETICAL 114.4 KD PROTEIN
MYCOPLASMA GENITALIUM
56-83
159-193
420-445


PYNGA_CLOPE
HYPOTHETICAL PROTEIN
CLOSTRIDIUM PERFRINGENS
139-166


PYNOB_CLOPE
HYPOTHETICAL 31.2 KD PROTEIN
CLOSTRIDIUM PERFRINGENS
12-49
63-97
182-211


PYNTI_METTL
HYPOTHETICAL PROTEIN
METHANOCOCCUS THERMOLITHOTROPHICUS
55-89


PYNQI_PAKDE
HYPOTHETICAL 9.3 KD PROTEIN
PARACOCCUS DENITRIFICANS
52-86


PYNT3_ANASP
HYPOTHETICAL 28.1 KD PROTEIN
ANABAENA SP
171-198


PYNTS_ANASP
HYPOTHETICAL PROTEIN
ANABAENA SP
87-165


PYOHD_ECOLI
HYPOTHETICAL 21.4 KD PROTEIN
ESCHERICHIA COLI
5-32


PYOHO_ECOLI
HYPOTHETICAL 43.3 KD PROTEIN
ESCHERICHIA COLI
104-171
289-316


PYOJA_ECOLI
HYPOTHETICAL 15.0 KD PROTEIN
ESCHERICHIA COLI
17-44


PYOJE_ECOLI
HYPOTHETICAL 93.5 KD PROTEIN
ESCHERICHIA COLI
221-248


PYOJF_ECOLI
HYPOTHETICAL 9.5 KD PROTEIN
ESCHERICHIA COLI
41-82


PYOJH_ECOLI
HYPOTHETICAL 54.3 KD PROTEIN
ESCHERICHIA COLI
145-193


PYOJJ_ECOLI
HYPOTHETICAL 36-2 KD PROTEIN
ESCHERICHIA COLI
94-121


PYOM2_PHOS9
HYPOTHETICAL PROTEIN IN OMPH 3′REGION
PHOTOBACTERIUM SP
32-59


PYOPH_YEREN
PROTEIN-TYROSINE PHOSPHATASE YOPH
YERSINIA ENTEROCOLITICA
63-105


PYOPH_YERPS
PROTEIN-TYROSINE PHOSPHATASE YOPH
YERSINIA PSEUDOTUBERCULOSIS
63-105


PYOPH_YEREN
OUTER MEMBRANE PROTEIN YOPN
YERSINIA ENTEROCOLITICA
23-50
66-93
235-262


PYOPN_YERPS
OUTER MEMBRANE PROTEIN YOPN
YERSINIA PSEUDOTUBERCULOSIS
23-50
66-93
235-262


PYOPQ_YEREN
YOPQ PROTEIN PRECURSOR
YERSINIA ENTEROCOLITICA
6I-88


PYORA_HAEIN
HYPOTHETICAL 31.5 KD PROTEIN
HAEMOPHILUS INFLUENZAE
147-174


PYORA_LISMO
HYPOThETICAL 25.6 KD PROTEIN
LISTERIA MONOCYTOGENES
32-77


PYORA_PYRWO
HYPOTHETICAL 24.7 KD PROTEIN
PYROCOCCUS WOESEI
183-210


PYORB_HAEIN
HYPOTHETICAL 19.8 KD PROTEIN
HAEMOPHILUS INFLUENZAE
39-66


PYORC_HAEIN
HYPOTHETICAL 19.9 KD PROTEIN
HAEMOPHILUS INFLUENZAE
49-79


PYORE_HAEIN
.8 KD PROTEIN
HAEMOPHILUS INFLUENZAE
47-74
82-109


PYORF_HAEIN
26.8 KD PROTEIN
HAEMOPHILUS INFLUENZAE
99-229


PYORH_HAEIN
HYPOTHETICAL 13.7 KD PROTEIN
HAEMOPHILUS INFLUENZAE
7-34


PYORI_HAEIN
95.4 KD PROTEIN
HAEMOPHILUS INFLUENZAE
416-450
688-722


PYORQ_BACSU
HYPOTHETICAL 34 KD PROTEIN
BACILLUS SUBTILIS
148-175


PYORX_PYRWO
HYPOTHETICAL PROTEIN
PYROCOCCUS WOESEI
66-93


PYORZ_LISMO
HYPOTHETICAL 16.9 KD PROTEIN
LISTERIA MONOCYTOGENES
27-54


PYPIS_STAAU
HYPOTHETICAL 15.5 KD PROTEIN
STAPHYLOCOCCUS AUREUS
71-98
110-137


PYP23_BACSU
HYPOTHETICAL 22.5 KD PROTEIN
BACILLUS SUBTILIS
57-84


PYP23_STAAU
HYPOTHETICAL 22.2 KD PROTEIN
STAPHYLOCOCCUS AUREUS
29-70


PYP2A_STAAU
HYPOTHETICAL 26.9 KD PROTEIN
STAPHYLOCOCCUS AUREUS
34-104


PYP2B_STAAU
HYPOTHETICAL 27.0 KD PROTEIN
STAPHYLOCOCCUS AUREUS
23-60
62-89
179-206


PYP2C_STAAU
HYPOTHETICAL 27.7 KD PROTEIN
STAPHYLOCOCCUS AUREUS
13-83
129-176


PYPHI_SYNP2
HYPOTHETICAL 18.1 KD PROTEIN
SYNECHOCOCCUS SP
34-61


PYPI6_CLOPE
HYPOTHETICAL 19.7 KD PROTEIN
CLOSTRIDIUM PERFRINGENS
7-34
43-77
83-149


PYPI9_CLOPE
HYPOTHETICAL 34.5 KD PROTEIN
CLOSTRIDIUM PERFRINGENS
2-59


PYPIX_CLOPE
HYPOTHETICAL 18.4 KD PROTEIN
CLOSTRIDIUM PERFRINGENS
110-137
263-290
303-340


PYPIY_PSEAE
HYPOTHETICAL 38.5 KD PROTEIN
PSEUDOMONAS AERUGINOSA
22-52


PYPP_BACSU
HYPOTHETICAL PROCESSING PROTEASE
BACILLUS SUBTILIS
329-356


PYPQQ_KLEPN
HYPOTHETICAL PROTEIN
KLEBSIELLA PNEUMONIAE
243-270


PYPS2_PLEBO
HYPOTHETICAL 13.1 KD PROTEIN
PLECTONEMA BORYAMIM
27-54


PYPVI_METTF
HYPOTHETICAL 40.7 KD PROTEIN
METHANOBACTERIUM THERMOFORMICICUM
58-85
308-335


PYPV
_METTF
HYPOTHETICAL 22.5 KD PROTEIN
METHANOBACTERIUM THERMOFORMICICUM
3-30


PYPV7_METTF
HYPOThETICAL 17.3 KD PROTEIN
METHANOBACTERIUM THERMOFORMICICUM
69-117


PYPVB_METTF
HYPOTHETICAL 49-6 KD PROTEIN
METHANOBACTERIUM THERMOFORMICICUM
333-360
389-430


PYPYB_BACSU
HYPOTHETICAL 72.4 KD PROTEIN
BACILLUS SUBTILIS
602-636


PYPZI_METTF
HYPOTHETICAL 40.6 KD PROTEIN
METHANOBACTEPIUM THERMOFORMICICUM 58-85
308-335


PYPZ2_METTF
HYPOTHETICAL 33.1 KD PROTEIN
METHANOBACTERIUM THERMOFORMICICUM
38-65
154-188


PYPES_METTF
HYPOTHETICAL 54-1 KD PROTEIN
METHANOBACTEPIUM THERMOFORMICICUM
193-220
226-253
381-408


PYPZ7_METTF
HYPOTHETICAL 9.7 KD PROTEIN
METHANOBACTERIUM THERMOFORMICICUM
3-78


PYRIS_THEPE
HYPOTHETICAL 18.7 KD PROTEIN
THERMOFILUM PENDENS
82-109


PYRBI_HALCU
HYPOTHETICAL 40 KD PROTEIN
HALOBACTERIUM CUTIRUBRUM
20-51


PYREC_SYNP2
HYPOTHETICAL 28.7 KD PROTEIN
SYNECHOCOCCUS SP
49-76


PYRPO_SALTY
HYPOTHETICAL 40-6 KD PROTEIN
SALMONELLA TYPHIMURIUM
143-190


PYRF2_SALTY
HYPOTHETICAL 51.0 KO PROTEIN
SALMONELLA TYPHIMURIUM
428-455


PYRF5_SALTY
HYPOTHETICAL 20.6 KD PROTEIN
SALMONELLA TYPHIMURIUM
29-56


PYRF6_SALTY
HYPOTHETICAL 36.6 KD PROTEIN
SALMONELLA TYPHIMURIUM
130-157


PYRO2_LACLA
HYPOTHETICAL PROTEIN
LACTOCOCCUS LACTIS
340-167


PYRLI_METVA
HYPOTHETICAL PROTEIN
METHANOCOCCUS VANNIELII
40-93
129-156


PYRP2_METVA
HYPOTHETICAL 11.6 KD PROTEIN
METHANOCOCCUS VANNIELII
13-40


PYRP2_SULAC
HYPOTHETICAL 11.5 KD PROTEIN
SULFOLOBUS ACIDOCALDARIUS
5-51


PYRP3_SULAC
HYPOTHETICAL 14.5 KD PROTEIN
SULFOLOBUS ACIDOCALDARIUS
37-71


PYRTP_BACSU
HYPOTHETICAL 25.3 KD PROTEIN
BACILLUS SUBTILIS
29-56


PYRTS_BACSU
HYPOTHETICAL 11.4 KD PROTEIN
BACILLUS SUBTILIS
3-30
44-81


PYSCB_YEREN
HYPOTHETICAL YSC OPERON PROTEIN E
YERSINIA ENTEROCOLITICA
90-121


PYSCC_YEREN
YSC OPERON PROTEIN C PRECURSOR
YERSINIA ENTEROCOLITICA
38-72
363-399


PYSCD_YEREN
YSC OPERON PROTEIN D
YERSINIA ENTEROCOLITICA
242-269


PYSCH_YEREN
YSC OPERON PROTEIN H
YERSINIA ENTEROCOLITICA
28-58


PYSCH_YERPS
YSC OPERON PROTEIN H
YERSINIA PSEUDOTUBERCULOSIS
28-58


PYSCI_YEREN
YSC OPERON PROTEIN I
YERSINIA ENTEROCOLITICA
49-76


PYSCI_YERPS
YSC OPERON PROTEIN I
YERSINIA PSEUDOTUBERCULOSIS
49-76


PYSCJ_YEREN
YSC OPERON LIPOPROTEIN J PRECURSOR
YERSINIA ENTEROCOLITICA
99-126


PYSCJ_YERPS
YSC OPERON LIPOPROTEIN J PRECURSOR
YERSINIA PSEUDOTUBERCULOSIS
99-126


PYSCL_YEREN
YSC OPERON PROTEIN L
YERSINIA ENTEROCOLITICA
41-68


PYSCL_YERPS
YSC OPERON PROTEIN L
YERSINIA PSEUDOTUBERCULOSIS
41-68


PYSMA_SERMA
HYPOTHETICAL 9.5 KD PROTEIN
SERRATIA MARCESCENS
11-70


PYSO2_DESAM
HYPOTHETICAL 28.3 KD PROTEIN
DESULFUROLOBUS AMBIVALENS
68-109


PYSO3_DESAM
HYPOTHETICAL PROTEIN
DESULFUROLOBUS AMBIVALENS
65-155


PYSP2_LEPIN
HYPOTHETICAL PROTEIN
LEPTOSPIRA INTERROGANS
6-33
60-94


PYSRI_MYCMY
HYPOTHETICAL PROTEIN
MYCOPLASMA MYCOIDES
35-99
185-227
300-327


PYSY3_BACSU
HYPOTHETICAL 19.6 KD PROTEIN
BACILLUS SUBTILIS
72-99


PYSYN_METFE
HYPOTHETICAL PROTEIN
METHANOTHERMUS FERVIDUS
78-105


PYT37_STRFR
HYPOTHETICAL 37.1 KD PROTEIN
STREPTOMYCES FRADIAE
246-273


PYTDK_BACSU
HYPOTHETICAL 35.6 KD PROTEIN
BACILLUS SUBTILIS
244-271
279-306


PYTRE_LEPBI
HYPOTHETICAL 22 KD PROTIEN
LEPTOSPIRA BIFLEXA
84-113


PYTRP_LACLA
HYPOTHETICAL 13.3 KD PROTEIN
LACTOCOCCUS LACTIS
76-112


PYTSI_BACSU
HYPOTHETICAL 20 KD PROTEIN
BACILLUS SUBTILIS
37-64


PYTSF_SPICI
HYPOTHETICAL 23.8 KD PROTEIN
SPIROPLASMA CITRI
102-149


PYX04_BACSU
HYPOTHETICAL 12.8 KD PROTEIN
BACILLUS SUBTILIS
37-64
68-95


PYX06_BACSU
HYPOTHETICAL 21.0 KD PROTEIN
BACILLUS SUBTILIS
142-169


PYX13_BACSU
HYPOTHETICAL 26.0 KD PROTEIN
BACILLUS SUBTILIS
17-51


PYX15_BACSU
HYPOTHETICAL 61.8 KD PROTEIN
BACILLUS SUBTILIS
165-207
262-289


PYX18_BACSU
HYPOTHETICAL 66.8 KD PROTEIN
BACILLUS SUBTILIS
3-30
34-61
94-142


PYX19_BACSU
HYPOTHETICAL 31.3 KD PROTEIN
BACILLUS SUBTILIS
56-83
85-112


PYX20_BACSU
HYPOTHETICAL 23.2 KD PROTEIN
BACILLUS SUBTILIS
24-58


PYX12_ANASP
HYPOTHETICAL 18.9 KD PROTEIN
ANABAENA SP
77-104


PYXYB_CALSA
HYPOTHETICAL 10.7 KD PROTEIN
CALDOCELLUM SACCHAROLYTICUM
9-39


PYXYC_CALSA
HYPOTHETICAL PROTEIN
CALDOCELLUM SACCHAROLYTICUM
41-94


PYZEI_ECOLI
HYPOTHETICAL 16.7 KD PROTEIN
ESCHERICHIA COLI
41-78
















TABLE IX







107 × 178 × 4 SEARCH MOTIF RESULTS SUMMARY


FOR ALL HUMAN PROTEINS








PCGENE
107 × 178 × 4 Motif Search on All Human Protein Sequences

















FILE NAME
PROTEIN
AREA 1
AREA 2
AREA 3
AREA 4
AREA 5
AREA 6
AREA 7
AREA 8
AREA 9





P143F_HUMAN
14-3-3 PROTEIN ETA (PROTEIN AS1)(FRAGMENT).
101-135










P143S_HUMAN
14-3-3 PROTEIN HOMOGLOG STRATIFIN.
45-72


P143T_HUMAN
14-3-3 PROTEIN THETA (14-3-3 PROTEIN T-CELL)(HS1 PROTEIN).
61-92


P143Z_HUMAN
14-3-3 PROTEIN ZETA (PROTEIN KINASE C INHIBITOR PROTEIN-1)(KCIP-1)
28-55


P1A23_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-29 (AW-19) A*2901 ALPHA CHAIN
87-114


P1A24_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-29 (AW-19) A*2902 ALPHA CHAIN
87-114


P1B02_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-7 B*0702 ALPHA CHAIN
87-114


P1B05_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-13 B*1301 ALPHA CHAIN
87-114
148-182


P1B10_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-75 (B-15) B*1502 ALPHA CHAIN
84-115


P1B11_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-72 (BW-70) B*1503 ALPHA
84-115


P1B12_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-62 B*1504 ALPHA CHAIN
76-107


P1B13_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-18 B*1801 ALPHA CHAIN
84-115


P1B21_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3501 ALPHA CHAIN
84-115


P1B22_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3502 ALPHA CHAIN
84-115


P1B23_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3503 ALPHA CHAIN
84-115


P1B24_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3504 ALPHA CHAIN
76-107


P1B25_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3505 ALPHA CHAIN
84-115


P1B26_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3506 ALPHA CHAIN
84-115


P1B27_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3507 ALPHA CHAIN
84-115


P1B28_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-35 B*3508 ALPHA CHAIN
84-115


P1B29_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-37 B*3701 ALPHA CHAIN
88-115


P1B32_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-39 B*3902 ALPHA CHAIN
87-114


P1B33_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-60 (B-40) B*4001 ALPHA CHAIN
60-91


P1B34_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-40 B*4002 ALPHA CHAIN
84-115


P1B35_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-40 B*4003 ALPHA CHAIN
84-115


P1B36_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-40 B*4004 ALPHA CHAIN
84-115


P1B38_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-41 B*4101 ALPHA CHAIN
84-115


P1B39_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-42 B*4201 ALPHA CHAIN
87-114


P1B40_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-44 (B-12) B*4401 ALPHA CHAIN
84-111


P1B41_HUMAN
HLA CLASS I HISTOCOMPATLBILITY ANTIGEN, BW-44 (B-12) B*4402 ALPHA CHAIN
87-114


P1B42_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-44 (B-12) B*4403 ALPHA CHAIN
87-114


P1B43_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-45 (B-12) B*4501 ALPHA CHAIN
84-115


P1B44_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-46 B*4601 ALPHA CHAIN
87-114


P1B45_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-47 B*4701 ALPHA CHAIN
88-115


P1B46_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-48 B*4801 ALPHA CHAIN
84-115


P1B47_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-49 (B-21) B*4901 ALPHA CHAIN
87-114


P1B48_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-50 (B-21) B*5001 ALPHA CHAIN
84-115


P1B53_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-52 (B-5) B*5201 ALPHA CHAIN
87-114


P1B55_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-54 (BW-22) B*5401 ALPHA
87-114


P1B56_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-55 (BW-22) B*5501 ALPHA
87-114


P1B57_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-55 (BW-22) B*5502 ALPHA
87-114


P1B58_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-56 (BW-22) B*5601 ALPHA
87-114


P1B59_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, BW-56 (BW-22) B*5602 ALPHA
87-114


P1C01_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-1 CW*0101 ALPHA CHAIN
87-114


P1C02_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-1 CW*0102 ALPHA CHAIN
87-114


P1C03_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-2 CW*0201 ALPHA CHAIN
87-114


P1C04_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-2 CW*0202 ALPHA CHAIN
87-114


P1C06_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-3 CW*0302 ALPHA CHAIN
87-114


P1C12_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-8 CW*0801 ALPHA CHAIN
87-114


P1C13_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-8 CW*0802 ALPHA CHAIN
87-114


P1C14_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW-8 CW*0803 ALPHA CHAIN
87-114


P1C17_HUMAN
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, CW*1401 ALPHA CHAIN PRECURSOR
87-114


P25A6_HUMAN
69/71 KD (2*-5′) OLIGOADENYLATE SYNTHETASE
593-620


P2AAA_HUMAN
PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT, ALPHA ISOFORM
12-49
54-81


P2AAB_HUMAN
PROTEIN PHOSPHATASE PP2A, 65 KD REGULATORY SUBUNIT, BETA ISOFORM
9-36
41-68
79-106


P2ABA_HUMAN
PROTEIN PHOSPHATASE PP2A, 55 KD REGULATORY SUBUNIT, ALPHA ISOFORM
177-218


P411_HUMAN
ERYTHROID PROTEIN 4.1(BAND 4.1, ERYTHROCYTE FORM).
32-66


P412_HUMAN
NON-ERYTHROID PROTEIN 4.1 (BAND 4.1, LYMPHOID FORM).
3-30
708-735


P42_HUMAN
ERYTHROCYTE MEMBRANE PROTEIN BAND 4.2.
173-200
518-545


P4F2_HUMAN
4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN (4F2HC)(LYMPHOCYTE ACTIVATION
281-322


P5H1E_HUMAN
5-HYDROXYTRYPTAMINE 1E RECEPTOR (5-HT-1E) (SEROTONIN RECEPTOR)
311-338


P5H1F_HUMAN
5-HYDROXYTRYPTAMINE 1F RECEPTOR (5-HT-1F) (SEROTONIN RECEPTOR).
222-253


P5H2A_HUMAN
5-HYDROXYTRYPTAMINE 2A RECEPTOR (5-HT-2A) (SEROTONIN RECEPTOR)
22-56


P5H7_HUMAN
5-HYDROXYTRYPTAMINE 7 RECEPTOR (5-HT-7) (5-HT-X) (SEROTONIN RECEPTOR).
72-99


PA1AC_HUMAN
ALPHA-1-ANTIHYMOTRYPSIN PRECURSOR (ACT).
98-132
330-357


PA1AG_HUMAN
ALPHA-1-ACID GLYCOPROTEIN 1 PRECURSOR (OROSOMUCOID) (OMD).
92-119


PA1AT_HUMAN
ALPHA-1-ANTITRYPSIN PRECURSOR (ALPHA-1 PROTESE INHIBITOR) (ALPHA-1-
168-202


PA1AU_HUMAN
ALPHA-1-ANTITRYPSIN-RELATED PROTEIN PRECURSOR.
163-197


PA2AP_HUMAN
ALPHA-2-ANTIPLASMIN PRECURSOR (ALPHA-2-PLASMIN INHIBITOR) (ALPHA-2-
191-218
365-395


PA2GL_HUMAN
LEUCINE-RICH ALPHA-2-GLYCOPROTEIN (LRG).
104-134


PA2MG_HUMAN
ALPHA-2-MACROGLOBULIN PRECURSOR (ALPHA-2-M).
53-80
319-349
1085-1112
1402-1429


PA4_HUMAN
ALZHEIMER'S DISEASE AMYLOID A4 PROTEIN PRECURSOR (PROTEASE NEXIN-II)
428-455


PAACT_HUMAN
ALPHA-ACTININ (F-ACTIN CROSS LINKING PROTEIN).
92-119
720-747


PAATM_HUMAN
ASPARTATE AMINOTRANSFERASE, MITOCHONDRIAL PRECURSOR (EC 2.6.1.1) 109-136


PABP2_HUMAN
ENDOTHELIAL ACTIN-BINDING PROTEIN (ABP-280) (NONMUSCLE FILAMIN).
61-88
119-147
2604-2633


PAC12_HUMAN
ACTIVATOR I 37 KD SUBUNIT (REPLICATION FACTOR C 37 KD SUBUNIT) (A1
306-333


PAC15_HUMAN
ACTIVATOR I 140 KD SUBUNIT (REPLICATION FACTOR C LARGE SUBUNIT) (A1
14-51
182-209
668-700


PACDL_HUMAN
ACYL-COA DEHYDROGENASE PRECURSOR, LONG-CHAIN SPECIFIC (EC 1.3.99.13)
78-108
179-206
313-340


PACET_HUMAN
ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, TESTIS-SPECIFIC (EC 3.4.15.1)
78-115
126-153
676-710


PACE_HUMAN
ANGIOTENSIN-CONVERTING ENZYME PRECURSOR, SOMATIC (EC 3.4.15.1) (ACE)
652-689
700-727
1250-1284


PACHA_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, ALPHA CHAIN PRECURSOR.
48-80


PACHE_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, EPSILON CHAIN PRECURSOR.
46-98


PACHG_HUMAN
ACETYLCHOLINE RECEPTOR PROTEIN, GAMMA CHAIN PRECURSOR.
45-79
304-331


PACHP_HUMAN
NEURONAL ACETYLCHOLINE RECEPTOR PROTEIN, BETA-4 CHAIN (FRAGMENT).
29-56
70-97


PACRO_HUMAN
ACROSIN PRECURSOR (EC 3.4.21.10).
122-149


PACYM_HUMA
ACYLPHOSPHATASE, MUSCLE TYPE ISOZYME (EC 3.6.1.7) (ACYLPHOSPHATE
26-53


PADT2_HUMAN
ADP,ATP CARRIER PROTEIN, FIBROBLAST ISOFORM (ADP/ATP TRANSLOCASE 2)
162-189


PADT3_HUMAN
ADP,ATP CARRIER PROTEIN, LIVER ISOFORM T2 (ADP/ATP TRANSLOCASE 3)
163-190


PAK79_HUMAN
A-KINASE ANCHOR RPROTEIN 79 (AKAP 79) (CAMP-DEPENDENT PROTEIN KINASE
197-238
381-414


PALFA_HUMAN
FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) A (MUSCLE).
36-63


PALFB_HUMAN
FRUCTOSE-BISPHOSPHATE ALDOLASE (EC 4.1.2.13) B (LIVER).
79-113


PAMD1_HUMAN
AMP DEAMINASE 1 (EC 3.5.4.6) (MYOADENYLATE DEAMINASE) (AMP DEAMINASE
59-86


PAMD3_HUMAN
AMP DEAMINASE 3 (EC 3.5.4.6) (AMP DEAMINASE ISOFORM E).
49-76


PAMPN_HUMAN
AMINOPEPTIDASE N (EC 3.4.11.2) (MICROSOMAL AMINOPEPTIDASE) (GP 150)
492-523
604-648
926-964


PAMPR_HUMAN
AMPHIREGULIN PRECURSOR (AR).
213-247


PAMRP_HUMAN
ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN PRECURSOR
173-236
263-290


PANFB_HUMAN
BRAIN NATRIURETIC PEPTIDE PRECURSOR
36-63


PANK1_HUMAN
ANKYRIN R (ANKYRINS 2.1 AND 2.2) (ERYTHROCYTE ANKYRIN).
812-839
1004-1031
1617-1644


PANKB_HUMAN
ANKYRIN, BRAIN VARIANT 1 (ANKYRIN B) (ANKYRIN, NONERYTHROID)
1544-1571


PANKC_HUMAN
ANKYRIN, BRAIN VARIANT 2 (ANKYRIN B) (ANKYRIN, NONERYTHROID)
1811-1838


PANPA_HUMAN
ATRIAL NATRIURETIC PEPTIDE RECEPTOR A PRECURSOR (ANP-A) (ANPRA) (GC-A)
553-580
825-852


PANPB_HUMAN
ATRIAL NATRIURETIC PEPTIDE RECEPTOR B PRECURSOR (ANP-B) (ANPRB) (GC-B)
810-837


PANT3_HUMAN
ANTITHROMBIN-III PRECURSOR (ATIII).
162-196


PANX2_HUMAN
ANNEXIN II (LIPOCORTIN II) (CALPACTIN I HEAVY CHAIN) (CHROMOBINDIN 8)
40-67
306-333


PANX3_HUMAN
ANNEXIN III (LIPOCORTIN III) pLACENTAL ANTICOAGULANT PROTEIN III)
215-242


PANX6_HUMAN
ANNEXIN VI (LIPOCORTIN VI) (P68) (P70) (PROTEIN III) (CHROMOBINDIN 20)
60-87
626-653


PANX1_HUMAN
ANNEXIN, INTESTINE-SPECIVIC (ISA).
37-78
137-164


PAOFA_HUMAN
AMINE OXIDASE (FLAVIN-CONTAINING) A (EC 1.4.3.4) MONOAMINE OXIDASE)
16-43
74-104


PAOFB_HUMAN
AMINE OXIDASE (FLAVIN-CONTAINING) B (EC 1.4.3.4) MONOAMINE OXIDASE)
68-95


PAPA1_HUMAN
APOLIPOPROTEIN A-1 PRECURSOR (APO-A1).
57-84


PAPB_HUMAN
APOLIPOPROTEIN B-100 PRECURSOR (APO B-100/APPO B-48). 585-619
1073-1100
1353-1380
1524-1584
2074-2113
2132-2159
2181-2215
2240-2271
2360-2389




2466-2507
2529-2559
2850-3000
3360-3390
3480-3570
3620-3654
4040-4074
4090-4120
4135-4167




4274-4301
4397-4438
4465-4492
4499-4544


PAPC2_HUMAN
APOLIPOPROTEIN C-II PRECURSOR (APO-CII).
36-63


PAPC_HUMAN
ADENOMATOUS POLYPOSIS COLI PROTEIN (APC PROTEIN).
145-172
617-651
834-861
1795-1822
2172-2212
2575-2609


PAPE_HUMAN
APOLIPOPROTEIN E PRECURSOR (APO-E).
48-81
247-274


PAPOA_HUMAN
APOLIPOPROTEIN (A) PRECURSOR (EC 3.4.21.*) (APO(A)) (LP(A)).
4448-4475


PAQP1_HUMAN
AQUAPORIN-CHIP (WATER CHANNEL PROTEIN FOR RED BLOOD CELLS AND KIDNEY
39-73


PARK1_HUMAN
BETA-ADRENERGIC RECEPTOR KINASE 1 (EC 2.7.1.126) (BETA-ARK-1).
523-553


PARLY_HUMAN
ARGINIOSUCCINATE LYASE (EC 4.3.2.1) (ARGINOSUCCINASE).
69-103


PARNT_HUMAN
ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR (ARNT PROTEIN) (DIO
223-250


PARRC_HUMAN
BETA-ARRESTIN 2.
215-242
305-332


PARRS_HUMAN
ARRESTIN (RETINAL S-ANTIGEN) (48 KD PROTEIN) (S-AG).
299-352


PARY1_HUMAN
ARYLAMINE N-ACETYL TRANSFERASE, MONOMORPHIC (EC 2.3.1.5) (MNAT).
7-34


PARY2_HUMAN
ARYLAMINE N-ACETYL TRANSFERASE, POLYMORPHIC (EC 2.3.1.5 (PNAT).
7-34


PASNS_HUMAN
ASPARAGINE SYNTHETASE (GLUTAMINE-HYDROLYZING (EC 6.3.5.4) (TS11 CELL
311-338
347-374


PATCD_HUMAN
CALCIUM-TRANSPORTING ATPASE SAROCPLASIMC RETICULUM TYPE (EC 3.6.1.38).
163-190


PATCE_HUMAN
CALCIUM-TRANSPORTING ATPASE ENDOPLASMIC RETICULUM TYPE (EC 3.6.1.38).
163-190


PATF1_HUMAN
TRANSCRIPTION FACTOR ATF-1 (FRAGMENT).
203-230


PATF3_HUMAN
TRANSCRIPTION FACTOR ATF-3 (FRAGMENT).
155-183


PATF5_HUMAN
TRANSCRIPTION FACTOR ATF-5 (FRAGMENT).
30-61


PATF6_HUMAN
TRANSCRIPTION FACTOR ATF-6 (FRAGMENT).
34-68


PATFA_HUMAN
TRANSCRIPTION FACTOR ATF-A AND ATF-A-DELTA.
351-394


PATPF_HUMAN
ATP SYNTHASE B CHAIN, MITOCHONDRIAL PRECURSOR
129-163


PB232_HUMAN
NUCLEOLAR PHOSPHOPROTEIN B23 (NUCLEOPHOSMIN)(NUMATRIN).
114-141


PB2AR_HUMAN
BETA-2-ADRENERGIC RECEPTOR.
292-319
345-372


PB3A2_HUMAN
ANION EXCHANGE PROTEIN 2 (NON-ERYTHROID BAND 3-LIKE PROTEIN) (BND3L).
1081-1111


PB94_HUMAN
B94 PROTEIN.
115-142
525-562
609-636


PBAN7_HUMAN
ERYTHROCYTE BAND 7 INTEGRAL MEMBRANE PROTEIN.
106-140


PBASO_HUMAN
BASONUCLIN.
120-147
310-337
773-807


PBC2B_HUMAN
TRANSFORMING PROTEIN BCL-2-BETA.
178-205


PBCGF_HUMAN
B-CELL GROWTH FACTOR PRECURSOR (BCGF-12 KD).
33-63


PBCR_HUMAN
BREAKPOINT CLUSTER REGION PROTEIN.
784-825


PBGLR_HUMAN
BETA-GLUCURONIDASE PRECURSOR (EC 3.2.1.31).
246-280
504-531


PBMP2_HUMAN
BONE MORPHOGENETIC PROTEIN 2 PRECURSOR (BMP-2) (BMP-2A).
216-250


PMBP5_HUMAN
BONE MORPHOGENETIC PROTEIN 5 PRECURSOR (BMP-5).
202-229


PBMP6_HUMAN
BONE MORPHOGENETIC PROTEIN 6 PRECURSOR (BMP-6).
274-301


PBMP7_HUMAN
BONE MORPHOGENETIC PROTEIN 7 PRECURSOR (BMP-7) (OSTEOGENIC PROTEIN 1)
192-219


PBN51_HUMAN
BN51 PROTEIN.
284-311


PBP1_HUMAN
BACTERICIDAL PERMEABILITY INCREASING PROTEIN PRECURSOR (BPI) (CAP 57).
168-195


PBRS3_HUMAN
BOMBESIN RECEPTOR SUBTYPE-3 (BRS-3).
10-37


PBTF2_HUMAN
BASIC TRANSCRIPTION FACTOR 62 KD SUBUNIT (P62).
128-162
353-385


PBTG1_HUMAN
BTG1 PROTEIN (B-CELL TRANSLOCATION GENE 1 PROTEIN).
26-53


PC1TC_HUMAN
C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC (METHYLENETETRAHYDROFO
330-363


PC2TA_HUMAN
MHC CLASS II TRANSACTIVATOR CIITA.
921-948


PCA19_HUMAN
COLLAGEN ALPHA 1 (IX) CHAIN PRECURSOR.
120-150


PCA1B_HUMAN
COLLAGEN ALPHA 1 (XI) CHAIN PRECURSOR.
341-368


PCABV_HUMAN
CALBINDIN (VITAMIN D-DEPENDENT CALCIUM-BINDING PROTEIN (CABP), AVIAN-
27-54


PCAD5_HUMAN
CADHERIN 5 PRECURSOR (7B4 ANTIGEN).
723-750


PCADE_HUMAN
EPITHELIAL-CADHERIN PRECURSOR (E-CADHERIN) (UVOMORULIN) (CAM 120/80).
838-865


PCADN_HUMAN
NEURAL-CADHERIN PRECURSOR (N-CADHERIN).
95-122
323-350


PCADP_HUMAN
PLACENTAL-CADHERIN PRECURSOR (P.CADHERIN).
384-411
580-607


PCAGA_HUMAN
CALGRANULIN A (MIGRATION INHIBITORY FACTOR-RELATED PROTEIN 8) (MRP-8)
2-29


PCALR_HUMAN
CALCITONIN RECEPTOR PRECURSOR (CT-R).
140-167


PCAMA_HUMA
CARTILAGE MATRIX PROTEIN PRECURSOR.
297-324
467-494


PCAP1_HUMAN
CALPAIN 1, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17) (CALCIUM-ACTIVATED
561-588


PCAP2_HUMAN
CALPAIN 2, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17) (CALCIUM-ACTIVATED
257-284
502-529


PCAP3_HUMAN
CALPAIN P94, LARGE (CATALYTIC) SUBUNIT (EC 3.4.22.17) (CALCIUM-
674-701


PCAPL_HUMAN
PLACENTAL CALCIUM-BINDING PROTEIN.
13-40


PCAP_HUMAN
ADENYLYL CYCLASE-ASSOCIATED PROTEIN (CAP).
111-138
163-197
321-355


PCART_HUMAN
CALRETININ (29 KD CALBINDIN).
217-244


PCASB_HUMAN
BETA CASEIN PRECURSOR.
14-48


PCATA_HUMAN
CATALASE (EC 1.11.1.6).
442-456


PCATD_HUMAN
CATHEPSIN D PRECURSOR (EC 3.4.23.5).
253-282


PCATH_HUMAN
CATHEPSIN H PRECURSOR (EC 3.4.22.16).
41-68


PCATL_HUMAN
CATHEPSIN L1PRECURSOR (EC 3.4.22.15) (MAJOR EXCRETED PROTEIN) (MEP).
278-305


PCATS_HUMAN
CATHEPSIN S PRECURSOR (EC 3.4.22.27).
30-57
142-169


PCBFB_HUMAN
CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT B (CBF-B) (NY-Y PROTEIN
24-58
138-165


PCBG_HUMAN
CORTICOSTEROID-BINDING GLOBULIN PRECURSOR (CBG) (TRANSCORTIN).
88-122


PCBPB_HUMAN
CARBOXYPEPTIDASE B PRECURSOR (EC 3.4.17.2) (PANCREAS-SPECIFIC PROTEIN)
69-129
278-305
319-346


PCBPH_HUMAN
CARBOXYPEPTIDASE H PRECURSOR (EC 3.4.17.10) (CARBOXYPEPTIDASE E) (CPE)
355-382


PCC21_HUMAN
CDC21 HOMOLOG (P1-CDC21) (FRAGMENT).
35-62


PCC27_HUMAN
PROTEIN CDC27H5.
209-240


PCCG1_HUMAN
TRANSCRIPTION INITIATION FACTOR TFIID 250 KD SUBUNIT (TBP-ASSOCIATED-
1298-1342


PCD14_HUMAN
MONOCYTE DIFFERENTIATION ANTIGEN CD14 PRECURSOR (MYELOID CELL-SPECIF
142-169


PCDIA_HUMAN
T-CELL SURFACE GLYCOPROTEIN CDIA PRECURSOR (CDIA ANTIGEN) (T-CELL.
32-63
281-308


PCDIE_HUMAN
T-CELL SURFACE GLYCOPROTEIN CDIE PRECURSOR (CDIE ANTIGEN) (R2GI).
77-104


PCD20_HUMAN
B-LYMPHOCYTE ANTIGEN CD20 (B-LYMPHOCYTE SURFACE ANTIGEN B1) (LEU-16)
226-255


PCD2R_HUMAN
CD20 RECEPTOR PRECURSOR
226-255


PCD2_HUMAN
T-CELL SURFACE ANTIGEN CD2 PRECURSOR (T-CELL SURFACE ANTIGIN
88-119


PCD34_HUMAN
HEMOPOIETIC PROGENITOR CELL ANTIGEN CD34 PRECURSOR.
74-108


PCD37_HUMAN
LEUKOCYTE ANTIGEN CD37
101-128


PCD3G_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD3 GAMMA CHAIN PRECURSOR (T-CELL RECEPT
7-34


PCD3L_HUMAN
CD30 LIGAND (CD30-L).
96-130
183-217


PCD4X_HUMAN
CD44 ANTIGEN, EPITHELIAL FORM PRECURSOR (CD44E) (PHAGOCYTIC
328-355


PCD4_HUMAN
T-CELL SURFACE GLYCOPROTEIN CD4 PRECURSOR (T-CELL SURFACE ANTIGEN
44-71
240-267


PCD53_HUMAN
LEUKOCYTE SURFACE ANTIGEN CD53.
87-114


PCD72_HUMAN
B-CELL DIFFERENTIATION ANTIGEN CD72 (LYB-2).
118-177


PCDK3_HUMAN
CELL DIVISION PROTEIN KINASE 3 (EC 2.7.1.-).
5-32


PCDK5_HUMAN
CELL DIVISION PROTEIN KINASE 5 (EC 2.7.1.-) (KINASE PSSALRE).
5-32


PCEBB_HUMAN
CCAAT/ENHANCER BINDING PROTEIN BETA (C/EBP BETA) (NUCLEAR FACTOR
296-330


PCENB_HUMAN
MAJOR CENTROMERE AUTOANTIGEN B (CENTROMERE PROTEIN B) (CENP-B).
568-595


PCENC_HUMAN
CENTROMERE PROTEIN C (CENP-C) (CENTROMERE AUTOANTIGEN C).
433-460


PCENE_HUMAN
CENTROMERIC PROTEIN E (CENP-E PROTEIN).
372-399
493-520
553-607
715-752
767-825
850-884
903-947
963-995
1080-1107




1122-1149
1179-1239
1250-1277
1340-1367
1440-1481
1486-1556
1646-1680
1684-1724
1808-1846




1852-1883
1890-1917
1940-1988
2021-2048
2288-2318
2440-2478
2498-2563


PCERU_HUMAN
CERULOPLASMIN PRECURSOR (EC 1.16.3.1) (FERROXIDASE).
913-940


PCETP_HUMAN
CHOLESTERYL ESTER TRANSFER PROTEIN PRECURSOR.
71-108


PCFTR_HUMAN
CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR (CFTR).
158-189
802-829
895-922
1243-1270


PCGCC_HUMAN
CGMP-GATED CATION CHANNEL PROTEIN (CYCLIC NUCLEOTIDE
216-243


PCGL_HUMAN
CYSTATHIONINE GAMMA-LYASE (EC 4.4.1.1).
315-349


PCHLR_HUMAN
CHLORDECONE REDUCTASE (EC 1.1.1.225) (CDR).
17-51


PCHOL_HUMAN
CHOROIDERAEMIA-LIKE PROTEIN.
56-97
230-257
451-478


PCHOR_HUMAN
CHOROIDERAEMIA PROTEIN (TCD PROTEIN).
112-139


PCINA_HUMAN
SODIUM CHANNEL PROTEIN, CARDIAC AND SKELETAL MUSCLE ALPHA-SUBUNIT.
787-814
943-970


PCLCA_HUMAN
CLATHRIN LIGHT CHAIN A (BRAIN AND LYMPHOCYTE LCA).
121-148


PCLCB_HUMAN
CLATHRIN LIGHT CHAIN B (BRAIN AND LYMPHOCYTE LCB).
123-157


PCLCY_HUMAN
CALCYCLIN (PROLACTIN RECEPTOR ASSOCIATED PROTEIN) (PRA) (GROWTH
9-50


PCLUS_HUMAN
CLUSTERIN PRECURSOR (COMPLEMENT-ASSOCIATED PROTEIN SP-40,40)
36-98
323-350
367-394


PCMGA_HUMA
CHROMOGRANIN A PRECURSOR (CGA) (CONTAINS: PANCREASTATIN AND WE-14)
93-120
430-457


PCNTF_HUMAN
CILIARY NEUROTROPHIC FACTOR (CNTF).
66-93


PCO02_HUMAN
TUMOR-ASSOCIATED ANTIGEN CO-029.
29-56
93-148


PCO3_HUMAN
COMPLEMENT C3 PRECURSOR.
242-276
593-620
837-867


PCO4_HUMAN
COMPLEMENT C4 PRECURSOR.
1292-1319


PCO5_HUMAN
COMPLEMENT C5 PRECURSOR.
298-342
537-564
970-997
1270-1304


PCO6_HUMAN
COMPLEMENT C6 PRECURSOR.
367-398


PCO7_HUMAN
COMPLEMENT C7 PRECURSOR.
225-261


PCOX1_HUMAN
CYTOCHROME C OXIDASE POLYPEPTIDE I (EC 1.9.3.1).
353-380


PCP70_HUMAN
CYTOCHROME P450 VII (CHOLESTEROL 7-ALPHA-MONOOXYGENASE)
263-290
346-373


PCPCH_HUMAN
CYTOCHROME P450 IIC17 (EC 1.14.14.1) (P450-254C) (FRAGMENT).
109-136


PCPE1_HUMAN
CYTOCHROME P450 IIE1 (EC 1.14.14.1) (P450-J) (ETHANOL INDUCIBLE).
231-258


PCPSM_HUMAN
CARBAMOYL-PHOSPHATE SYNTHASE (AMMONIA) MITOCHONDRIAL PRECURSOR
112-146
420-447


PCPT2_HUMAN
MITACHONDRIAL CARNITINE PALMITOYLTRANSFERASE II PRECURSOR
410-437


PCPT7_HUMAN
CYTOCHROME P450 XVIIA1 (P450-C17) (EC 1.14.99.9) (STEROID 17-ALPHA-
226-257


PCPV1_HUMAN
CYTOCHROME P450 XIXA1 (AROMATASE) (EC 1.14.14.1) (ESTROGEN
234-271


PCR2_HUMAN
COMPLEMENT RECEPTOR TYOE 2 PRECURSOR (CR2) (COMPLEMENT C3D RECEPTOR)
986-1013


PCRCM_HUMAN
COLORECTAL MUTANT CANCER PROTEIN (MCC PROTEIN).
68-126
379-420
633-678
724-754
763-790


PCREB_HUMAN
CAMP RESPONSE ELEMENT BINDING PROTEINS A AND B (CREB-A AND CREB-B).
94-125


PCREP_HUMAN
CAMP RESPONSE ELEMENT BINDING PROTEINS CRE-BP1.
380-414


PCRP_HUMAN
C-REACTIVE ROTEIN PRECURSOR.
60-87
150-177


PCS1_HUMAN
CLEAVAGE SIGNAL-1 PROTEIN (CS-1).
203-233


PCSF1_HUMAN
MACROPHAGE COLONY STIMULATING FACTOR-1 PRECURSOR (CSF-1) (MCSF).
143-170


PCST3_HUMAN
CLEAVAGE STIMULATION FACTOR, 50 KD SUBUNIT (CSTF 50 KD SUBUNIT) (CF-1
6-33


PCTNA_HUMAN
ALPHA-CATENIN (CADHERIN-ASSOCIATED PROTEIN).
681-718


PCTNR_HUMAN
ALPHA-CATENIN RELATED PROTEIN (CATENIN ALPHA-2).
680-717


PCX26_HUMAN
GAP JUNCTION BETA-2 PROTEIN (CONNEXIN 26) (CX26).
108-139


PCX32_HUMAN
GAP JUNCTION BETA-1 PROTEIN (CONNEXIN 32) (CX32) (GAP JUNCTION 28 KD
117-144


PCX37_HUMAN
GAP JUNCTION ALPHA-4 PROTEIN (CONNEXIN 37) (CX37).
88-115


PCYB5_HUMAN
CYTOCHROME B5.
3-42


PCYG1_HUMAN
GUANYLATE CYCLASE SOLUBLE, BETA-1 CHAIN (EC 4.6.1.2) (70 KD CHAIN)
80-107
126-153
352-396


PCYG4_HUMAN
GUANYLATE CYCLASE SOLUBLE, ALPHA-2 CHAIN (EC 4.6.1.2).
106-133


PCYGR_HUMAN
RETINAL GUANYLYL CYCLASE PRECURSOR (EC 4.6.1.2).
824-851


PCYRG_HUMAN
CYTOKINE RECEPTOR COMMON GAMMA CHAIN PRECURSOR (GAMMA-C)
293-320


PCYTA_HUMAN
CYSTATIN A (STEFIN A) (CYSTATIN AS).
27-58


PDBL_HUMAN
PROTO-ONCOGENE DBL PRECURSOR (CONTAINS: MCF2).
233-283
485-524
766-793
801-845


PDESM_HUMAN
DESMIN.
153-180
272-312


PDESP_HUMAN
DESMOPLAKIN I AND II (DPI ANDDPII) (FRAGMENT).
31-79
113-143
217-244
269-317
382-434
437-467
528-558
563-598
630-674




697-734
738-789
1456-1493
1508-1535


PDHAP_HUMAN
ALDEHYDE DEHYDROGENASE, DIMERIC NADP-PREFERRING (EC 1.2.1.5)
31-58


PDMD_HUMAN
DYSTROPHIN.
86-116
338-365
484-511
753-780
976-1003
1012-1039
1201-1228
1364-1394
1615-1674




1838-1865
2158-2185
2313-2343
2752-2779
2786-2830
2912-2958
3014-3041
3499-3533


PDNJI_HUMAN
DNAJ PROTEIN HOMOLOG.
45-76


PDNLI_HUMAN
DNA LIGASE I (EC 6.5.1.1) (POLYDEOXYRIBONUCLEOTIDE SYNTHASE (ATP)).
130-157
355-392
732-759


PDPOA_HUMAN
DNA POLYMERASE ALPHA (EC 2.7.7.7).
25-74
1009-1057
1100-1127


PDPOD_HUMAN
DNA POLYMERASE DELTA CATALYTIC CHAIN (EC 2.7.7.7).
729-756


PDPP4_HUMAN
DIPEPTIDYL PEPTIDASE IV (EC 3.4.14.5) (DPP IV) (T-CELL ACTIVATION
29-77
114-148


PDRN1_HUMAN
DEOXYRIBONUCLEASE I PRECURSOR (EC 3.1.21.1) (DNASE I).
44-71


PDSC2_HUMAN
DESMOCOLLIN 3A/3B PRECURSOR (DESMOSOMAL GLYCOPROTEIN II AND III).
80-107
355-398


PDSG1_HUMAN
DESMOGLEIN 1 PRECURSOR (DESMOSOMAL GLYCOPROTEIN 1) (DG1).
15-42
271-298
497-531


PDSG3_HUMAN
DESMOGLEIN 3 PRECURSOR (130 KD PEMPHIGUS VULGARIS ANTIGEN) (PVA).
211-248
325-352


PDUG_HUMAN
DIVERGENT UPSTREAM PROTEIN (DUP).
584-618


PEAR1_HUMAN
V-ERBA RELATED PROTEIN EAR-1.
523-550


PEB12_HUMAN
EBV-INDUCED G PROTEIN-COUPLED RECEPTOR 2 (EB12).
44-78


PEF1B_HUMAN
ELONGATION FACTOR 1-BETA (EF-1-BETA).
105-132


PEF1D_HUMAN
ELONGATION FACTOR 1-DELTA (EF-1-DELTA).
84-118


PEGFR_HUMAN
EPIDERMAL GROWTH FACTOR RECEPTOR PRECURSOR (EC 2.7.1.112).
64-91
440-467


PEGF_HUMAN
EPIDERMAL GROWTH FACTOR PRECURSOR, KIDNEY (EGF) (UROGASTRONE).
47-74


PELF1_HUMAN
ETS-RELATED TRANSCRIPTION FACTOR ELF-1.
551-588


PENPL_HUMAN
ENDOPLASMIN PRECURSOR (94 KD GLUCOSE-REGULATED PROTEIN) (GRP94) (GP96
47-74
246-273


PENV1_HUMAN
RETROVIRUS-RELATED ENV POLYPROTEIN.
382-420


PEPC_HUMAN
IG EPSILON CHAIN REGION.
161-188


PEMPO_HUMAN
EPIMORPHIN.
35-62
67-94
249-283


PER72_HUMAN
PROTEIN DISULFIDE ISOMERASE-RELATED PROTEIN PRECURSOR (ERP72).
58-85
142-169
458-485


PERC1_HUMAN
DNA EXCISION REPAIR PROTEIN ERCC-1.
240-270


PERC6_HUMAN
EXCISION REPAIR PROTEIN ERCC-6.
160-209
939-973


PESTR_HUMAN
ESTROGEN RECEPTOR (ER).
451-488


PET2_HUMAN
ENDOTHELIN-2 PRECURSOR (ET-2).
133-160


PET3_HUMAN
ENDOTHELIN-3 PRECURSOR (ET-3).
182-209


PEV2A_HUMAN
EV12A PROTEIN PRECURSOR.
29-56


PEZRI_HUMAN
EZRIN (P81) (CYTOVILLIN) (VILLIN-2).
119-146
351-392
402-429
512-539


PFA5_HUMAN
COAGULATION FACTOR V PRECURSOR.
2103-2137


PFA8_HUMAN
COAGULATION FACTOR VIII PRECURSOR (PROCOAGULANT COMPONENT). 871-908
1007-1034
1194-1230


PFA9_HUMAN
COAGULATION FACTOR IX PRECURSOR (ec 3.4.21.22) (CHRISTMAS FACTOR
271-298


PFAB1_HUMAN
FATTY ACID-BINDING PROTEIN, INTESTINAL.
98-125


PFASA_HUMAN
APOPTOSIS-MEDIATING SURFACE ANTIGEN FAS PRECURSOR (APO-1 ANTIGEN).
23-50
249-301
306-333


PFCE2_HUMAN
LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR (LYMPHOCYTE IGE 81-115


PFCEA_HUMAN
HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-SUBUNIT (FCERI)
140-174


PFGR2_HUMAN
FIBROBLAST GROWTH FACTOR RECEPTOR 2 RECURSOR (EC 2.7.1.122).
310-337


PFIBA_HUMAN
FIBRINOGEN ALPHA CHAIN PRECURSOR.
131-165
427-457


PFIBB_HUMAN
FIBRINOGEN BETA CHAIN PRECURSOR.
149-186


PFIBG_HUMAN
FIBRINOGEN GAMMA-A CHAIN PRECURSOR.
59-93
125-160


PFIBH_HUMAN
FIBRINOGEN GAMMA-B CHAIN (FIBRINOGEN GAMMA′).
59-93
125-160


PFINC_HUMAN
FIBRONECTIN PRECURSOR.
2168-2199


PFLII_HUMAN
LFI-1 ONCOGENE (ERGB TRANSCRIPTION FACTOR).
172-209


PFMO3_HUMAN
DIMETHYLANILINE MONOOXYGENASE (N-OXIDE FORMING) 3 (EC 1.14.13.8)
184-218
256-283
301-328


PFOS_HUMAN
P55-C-FOS PRONTO-ONCOGENE PROTEIN.
162-193


PFRA1_HUMAN
FOS-RELATED ANTIGEN 1.
133-168


PFRA2_HUMAN
FOS-RELATED ANTIGEN 2.
149-180


PFRIH_HUMAN
FERRITIN HEAVY CHAIN.
7-34


PFRIL_HUMAN
FERRITIN LIGHT CHAIN.
3-33


PFSHR_HUMAN
FOLLICLE STIMULATING HORMONE RECEPTOR PRECURSOR (FSH-R).
364-395


PFUCO_HUMAN
TISSUE ALPHA-L-FUCOSIDASE PRECURSOR (EC 3.2.1.51) (ALPHA-L-FUCOSIDASE
308-335


PFUMH_HUMAN
FUMARATE HYDRATASE, MITOCHONDRIAL (EC 4.2.1.2) (FUMARASE).
424-451


PG0S2_HUMAN
PUTATIVE LYMPHOCYTE G0/G1 SWITCH PROTEIN.
56-83


PG19P_HUMAN
PROTEIN KINASE C SUBSTRATE, 80 KD PROTEIN, HEAVY CHAIN (PKCSH)
146-173


PG6P1_HUMAN
GLUCOSE-6-PHOSPHATE ISOMERASE (GPI) (EC 5.3.1.9) (PHOSPHOGLUCOSE)
16-50


PG732_HUMAN
MAJOR GASTROINTESTINAL TUMOR-ASSOCIATED PROTEIN GA733-2 PRECURSOR
181-215


PGA12_HUMAN
GALACTOKINASE 2 (EC 2.7.1.6.).
254-281


PGAA1_HUMAN
GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-1 SUBUNIT PRECURSOR (GABA(A)
210-237


PGAA3_HUMAN
GAMMA-AMINOBUTYRIC-ACID RECEPTOR ALPHA-3 SUBUNIT PRECURSOR (GABA(A)
211-255


PGASR_HUMAN
GASTRIN/CHOLECYSTOKININ TYPE B RECEPTOR (CCK-6 RECEPTOR).
75-105


PGB01_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA SUBUNIT 1.
22-49


PGB02_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(O), ALPHA SUBUNIT 2.
22-49


PGBAK_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(K), ALPHA SUBUNIT (G(I) ALPHA-3).
22-49


PGBAS_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(S), ALPHA SUBUNIT (ADEBYLATE
7-34


PGBAY_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(Y), ALPHA SUBUNIT (ALPHA-11).
95-122


PGBB3_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) BETA SUBUNIT 3
65-92


PGBLP_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN 12.3.
110-137
255-282
289-316


PGBP2_HUMAN
INTERFERON-INDRCED GUANYLATE-BINDING PROTEIN 2 (GUANINE NUCLEOTIDE-
454-488


PGBT2_HUMAN
GUANINE NUCLEOTIDE-BINDING PROTEIN G(T), ALPHA-2 SUBUNIT TRANSDUCIN
22-49


PGCF_HUMAN
GC-RICH SEQUENCE DNA-BINDING FACTOR (GCF) (TRANSCRIPTION FACTOR 9)
200-227
293-320
367-394
396-423
647-674


PGCHI_HUMAN
GTP CYCLOHDOLASE 1 (EC 3.5.4.16).
165-192


PGCRA_HUMAN
GLUCOCORTICOID RECEPTOR, ALPHA (GR).
167-194


PGCRB_HUMAN
GLUCOCORTICOID RECEPTOR, BETA (GR).
167-194


PGCSP_HUMAN
GLYCINE DEHYDROGENASE (DECARBOXYLATING) PRECURSOR (EC 1.4.4.2)
460-487


PGDN_HUMAN
GLIA DERIVED NEXIN (GDN)(PROTEASE NEXIN I).
83-110


PGELS_HUMAN
GELSOLIN PRECURSOR, PLASMA (ACTIN-DEPOLYMERIZING FACTOR) (ADF)
701-728


PGFAP_HUMAN
GLIAL FIBRILLARY ACIDIC PROTEIN, ASTROCYTE.
189-216
349-376
384-411


PGL65_HUMAN
N-ACETYLGLUCOSAMINE-6-SULFATASE PRECURSOR (EC 3.1.6.14) (G6S)
170-221


PGLPK_HUMAN
GLYCEROL KINASE (EC 2.7.1.30) (ATP:GLYCEROL 3-PHOSPHOTRANSFERASE)
78-112
251-278


PGLY1_HUMAN
SERINE HYDROXYMETHYLTRANSFERASE, CYTOSOLIC (EC 2.1.2.1) (SERINE
32-59
344-371


PGLY2_HUMAN
SERINE HYDROXYMETHYLTRANSFERASE, MITOCHONDRIAL (EC 2.1.2.1) (SERINE
417-444


PGR78_HUMAN
78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN
564-591
598-625


PGRA2_HUMAN
GLYCINE RECEPTOR ALPHA-2 CHAIN PRECURSOR.
142-169
341-368


PGRAV_HUMAN
GRAVIN (FRAGMENT).
9-43
61-88


PGRFR_HUMAN
GROWTH HORMONE-RELEASING HORMONE RECEPTOR PRECURSOR (GHRH RECEPT
128-155


PGTH2_HUMAN
GLUTATHIONE S-TRANSFERASE HA SUBUNIT 2 (EC 2.5.1.18) (GTH2) (CLASS-
64-91


PGTPA_HUMAN
GTPASE-ACTIVATING PROTEIN (GAP) (RAS P21 PROTEIN ACTIVATOR).
474-501
1012-1047


PGTR1_HUMAN
GLUCOSE TRANSPORTER TYPE 1, ERYTHROCYTE/BRAIN.
274-301


PGTR3_HUMAN
GLUCOSE TRANSPORTER TYPE 3, BRAIN.
272-299


PGTR4_HUMAN
GLUCOSE TRANSPORTER TYPE 4, INSULIN-RESPONSIVE.
290-317


PH10_HUMAN
HISTONE H1′.
44-89


PH1A_HUMAN
HISTONE H1A (H1.1).
73-104


PH1B_HUMAN
HISTONE H1B (H1.4).
70-101


PH1C_HUMAN
HISTONE H1C (H1.3).
72-102


PH1D_HUMAN
HISTONE H1D (H1.2).
70-101


PH1T_HUMAN
HISTONE H1T.
74-105


PH2B0_HUMAN
HISTONE H2B.1.
20-47


PH2B2_HUMAN
HISTONE H2B.2.
20-47


PH2B_HUMAN
HISTONE H2B (H2B.1 A).
20-47


PHA25_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DQ(5) ALPHA CHAIN PRECURSOR
142-169


PHB2K_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR-W53 BETA CHAIN PRECURSOR.
56-83


PHB2P_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W4) BETA CHAIN PRECURSOR.
50-77


PHB2Q_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DP(W2) BETA CHAIN PRECURSOR.
50-77


PHB2S_HUMAN
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, SB BETA CHAIN (FRAGMENT).
16-42


PHEG1_HUMAN
HEPARIN-BINDING GROWTH FACTOR PRECURSOR 1 (HBGF-1) (ACIDIC FIBROBLAST
102-129


PHBG3_HUMAN
INT-2 PROTO-ONCOGENE PROTEIN PRECURSOR (HBGF-3).
61-91


PHBG6_HUMAN
FIBROBLAST GROWTH FACTOR-6PRECURSOR (FGF-6) (HBGF-6) (HST-2).
41-75
159-186


PHB1_HUMAN
P59 PROTEIN (HSP BINDING IMMUNOPHILIN) (HBI) (POSSIBLE PEPTIDYL-PROLYL
264-312


PHEM4_HUMAN
UROPORPHYRINOGEN-III SYNTHASE (EC 4.2.1.75) (UROPORPHYRINOGEN-III
74-118


PHEP2_HUMAN
HEPARIN COFACTOR II PRECURSOR (HC-II) (PROTEASE INHIBITOR LEUSERPIN 2)
169-196


PHEPS_HUMAN
SERINE PROTEASE HEPSIN (EC 3.4.21.-).
22-49


PHEXA_HUMAN
BETA-HEXOSAMINIDASE ALPHA CHAIN PRECURSOR (EC 3.2.1.52) (N-ACETYL-
356-383


PHEXB_HUMAN
BETA-HEXOSAMINIDASE BETA CHAIN PRECURSOR (EC 3.2.1.52) (N-ACETYL-BETA-
388-415


PHMX1_HUMAN
HOMEOBOX PROTEIN MSX-1 (HOX-7).
178-212


PHNFA_HUMAN
HEPATOCYTE NUCLEAR FACTOR 1-ALPHA (HNF-1A) (LIVER SPECIFIC
2-29


PHO1_HUMAN
HEME OXYGENASE 1 (EC 1.14.99.3) (HO-1).
197-224


PHPPD_HUMAN
4-HYDROXYPHENYLPYRUVATE DIOXYGENASE (EC 1.13.11.27) (4HPPD).
306-333


PHRX_HUMAN
ZINC FINGER PROTEIN HRX.
521-548
914-974
637-1666
2215-2286
2289-2316
3317-3344
3448-3475


PHS1_HUMAN
HEMATOPOIETIC LINEAGE CELL SPECIFIC PROTEIN.
43-70


PHS9A_HUMAN
HEAT SHOCK PROTEIN HSP 90-ALPHA (HSP 86).
443-470
640-674


PHSER_HUMAN
HEAT-STABLE ENTEROTOXIN RECEPTOR PRECURSOR (GC-C) (INTESTINAL
511-545


PHSF1_HUMAN
HEAT SHOCK FACTOR PROTEIN 1 (HSF 1) (HEAT SHOCK TRANSCRIPTION FACTOR
113-140
168-209


PHSF2_HUMAN
HEAT SHOCK FACTOR PROTEIN 2 (HSF 2) (HEAT SHOCK TRANSCRIPTION FACTOR
117-198


PHV21_HUMAN
IG HEAVY CHAIN PRECURSOR V-II REGION (ARH-77).
67-108


PHV3T_HUMAN
IG HEAVY CHAIN V-III REGION (GAL).
47-74


PHX11_HUMAN
HOMEOBOX PROTEIN HOX-11 (TCL-3 PROTO-ONCOGENE).
262-289


PHXB7_HUMAN
HOMEOBOX PROTEIN HOX-B7 (HOX-2C) (HHO.C1).
135-162


PIAPP_HUMAN
ISLET AMYLOID POLYPEPTIDE
53-80


PIBP3_HUMAN
INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN 3 PRECURSOR (IGFBP-3)
183-210


PIC1_HUMAN
PLASMA PROTEASE C1 INHIBITOR PRECURSOR (C1 INH).
251-278


PICA2_HUMAN
INTERCELLULAR ADHESION MOLECULE-2 PRECURSOR (ICAM-2).
57-84


PIDE_HUMAN
INSULIN-DEGRADING ENZYME (EC 3.4.99.45) (INSULINASE) (INSULIN
474-504
907-941


PIF41_HUMAN
EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1).
232-259
322-349


PIF4B_HUMAN
INTRINSIC FACTOR PRECURSOR (IF) (GASTRIC INTRINSIC FACTOR).
149-176
406-433


PIF_HUMAN
INHIBIN BETA A CHAIN PRECURSOR (ACTIVIN BETA-A CHAIN) (ERYTHROID
308-349


PIHBA_HUMAN
INTERLEUKIN-1 ALPHA PRECURSOR (IL-1 ALPHA) (HEMATOPOIETIN-1).
80-107
183-210


PIL1A_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-IR1) (P80).
76-110
172-199


PILIR_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE I PRECURSOR (IL-IR1) (P80).
437-467


PILIS_HUMAN
INTERLEUKIN-1 RECEPTOR, TYPE II PRECURSOR (IL-IR2).
159-186


PIL5R_HUMAN
INTERLEUKIN-5 RECEPTOR ALPHA CHAIN PRECURSOR (IL-5R-ALPHA).
87-114


PIL6_HUMAN
INTERLEUKIN-6 PRECURSOR (IL-6) (B-CELL STIMULATORY FACTOR 2) (BSF-2)
112-139


PINI_HUMAN
INTERFERON ALPHA-PRECURSOR.
94-121


PINAR_HUMAN
INTERFERON ALPHA-RECEPTOR PRECURSOR (IFN-ALPHA-REC).
90-117
164-191
300-327
508-535


PINB_HUMAN
INTERFERON BETA PRECURSOR (FIBROBLAST).
88-129


PINI1_HUMAN
INTERFERON-INDUCED 17 KD PROTEIN (CONTAINS: INTERFERON-INDUCED 15 KD
83-121


PINI6_HUMAN
INTERFERON-INDUCED 56 KD PROTEIN (IFI-56K).
51-58
216-245
393-430


PINSR_HUMAN
INSULIN RECEPTOR PRECRSOR (EC 2.7.1.112) (IR).
592-619


PINVO_HUMAN
INVOLUCRIN.
119-146
229-273
326-363
386-450


PIP3K_HUMAN
ID-MYO-INOSITOL-TRISPHOSPHATE 3-KINASE A (EC 2.7.1.127) (INOSITOL
121-162


PIPSP_HUMAN
PLASMA SERINE PROTEASE (PROTEIN C) INHIBITOR PRECURSOR (PCI)
90-117
206-233


PIRBP_HUMAN
INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN PRECURSOR (IRBP)
670-697


PIRF_HUMAN
INTERFERON REGULATORY FACTOR 2 (IRF-2).
157-193


PIT5P_HUMAN
75 KD INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE PRECURSOR
235-262


PITA2_HUMAN
PLATELET MEMBRANE GLYCOPROTEIN IA PRECURSOR (GPIA) (COLLAGEN RECEPTO
579-606
900-927


PITA5_HUMAN
FIBRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR (INTEGRIN ALPHA-F)
250-284
657-695
765-792


PITA6_HUMAN
INTEGRIN ALPHA-6 PRECURSOR (VLA-6) (INTEGRIN ALPHA-E) (CD49F).
884-911
944-974


PITAL_HUMAN
LEUKOCYTE ADHESION GLYCOPROTEIN LFA-I ALPHA CHAIN PRECURSOR (LEUKOC
256-283
310-34
795-822


PITAM_HUMAN
CELL SURFACE GLYCOPROTEIN MAC-1 ALPHA SUBUNIT PRECURSOR (CR-3 ALPHA
1044-1078


PITAV_HUMAN
VITRONECTIN RECEPTOR ALPHA SUBUNIT PRECURSOR (INTEGRIN ALPHA-V)
230-264


PITB1_HUMAN
FIBRONECTIN RECEPTOR BETA SUBUNIT PRECURSOR (INTEGRIN BETA-1) (CD29)
218-245
354-399


PITB2_HUMAN
CELL SURFACE ADHESION GLYCOPROTEINS LFA-1, CR3 AND P150, 95, BETA-
339-366
705-732


PITB3_HUMAN
PLATELET MEMBRANE GLYCOPROTEIN IIIA PRECURSOR (GPIIIA) (INTEGRIN BETA-
324-351


PITB4_HUMAN
INTEGRIN BETA-4 SUBUNIT PRECURSOR (GP 150).
342-369


PITB5_HUMAN
INTEGRIN BETA-5 SUBUNIT PRECURSOR.
724-751


PITB6_HUMAN
INTEGRIN BETA-6 SUBUNIT PRECURSOR.
311-338
352-393


PITB8_HUMAN
INTEGRIN BETA-8 SUBUNIT PRECURSOR.
362-399
696-737


PIT12_HUMAN
INTER-ALPHA-TRYPSIN INHIBITOR COMPLEX COMPONENT II PRECURSOR.
134-161
425-452
772-818


PK1CJ_HUMAN
KERATIN, TYPE I CYTOSKELETAL 10 (CYTOKERATIN 10) (K10).
154-187
196-227
337-399
428-462


PK1CM_HUMAN
KERATIN, TYPE I CYTOSKELETAL 13 (CYTOKERATIN 13) (K13).
112-142


PK1CN_HUMAN
KERATIN, TYPE I CYTOSKELETAL 14 (CYTORERATIN 14) (K14).
122-152
306-335
393-424


PK1CO_HUMAN
KERATIN, TYPE I CYTOSKELETAL 15 (CYTOKERATIN 15) (K15).
113-143


PK1CP_HUMAN
KERATIN, TYPE I CYTOSKELETAL 16 (CYTOKERATIN 16) (K16).
308-339


PK1CQ_HUMAN
KERATIN, TYPE I CYTOSKELETAL 17 (CYTORERATIN 17) (K17).
122-152
302-346
393-431


PK1CR_HUMAN
KERATIN, TYPE I CYTOSKELETAL 18 (CYTORERATIN 18) (K18).
87-114
251-298
337-385


PK1CS_HUMAN
KERATIN, TYPE I CYTOSKELETAL 19 (CYTOKERATIN 19) (K19).
88-118
317-362
370-397


PK2C1_HUMAN
KERATIN, TYPE I CYTOSKELETAL 1 (CYTOKERATIN 1) (K1) (CYTOSKELETAL 67
196-226
346-384
390-467


PK2C2_HUMAN
KERATIN, TYPE II CYTOSKELETAL 65 KD.
215-248
364-405
461-488


PK2C4_HUMAN
KERATIN, TYPE II CYTOSKELETAL 4 (CYTOKERATIN 4) (K4) (FRAGMENT).
42-73
126-153
189-248


PK2C5_HUMAN
KERATIN, TYPE II CYTOSKELETAL 5 (CYTOKERATIN 5) (K5) (58 KD
185-246
332-373


PK2C6_HUMAN
KERATIN, TYPE II CYTOSKELETAL 6 (CYTOKERATIN 6) (K6B KERATIN).
178-239
325-366
422-449


PK2C8_HUMAN
KERATIN, TYPE II CYTOSKELETAL 8 (CYTOKERATIN 8) (K8).
140-167


PK2CA_HUMAN
KERATIN, TYPE II CYTOSKELETAL 56 KD (K6A KERATIN) (FRAGMENT).
7-34
120-161
217-244


PK6PF_HUMAN
6-PHOSPHOFRUCTOKINASE, MUSCLE TYPE (EC 2.7.1.11) (PHOSPHOFRUCTOKINASE
140-167


PK6PL_HUMAN
6-PHOSPHOFRUCTOKINASE, LIVER TYPE (EC 2.7.1.11) (PHOSPHOPRUCTOKINASE
49-80
128-159


PKABL_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL (EC 2.7.1.112) (P150)
498-525


PKAC_HUMAN
IG KAPPA CHAIN C REGION.
37-85


PKALM_HUMAN
KALLMANN SYNDROME PROTEIN PRECURSOR (ADHESION MOLECULE-LIKE X-LINK
380-414


PKAP0_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE I-ALPHA REGULATORY CHAIN
179-206


PKAP1_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE I-BETA REGULATORY CHAIN
177-204


PKAP2_HUMAN
CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY CHAIN
175-202
290-317


PKBF1_HUMAN
NUCLEAR FACTOR KAPPA-B SUBUNIT-1 (NF-KAPPA-B P105 SUBUNIT)
529-570


PKCRB_HUMAN
CREATINE KINASE, B CHAIN (EC 2.7.3.2).
301-328


PKECK_HUMAN
TYROSINE PROTEIN-KINASE ECK PRECURSOR (EC 2.7.1.112) (EPITHELIAL CELL
466-493


PKFER_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FER (EC 2.7.1.112) (P94-FER)
219-246
564-591


PKFES_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE FES/FPS (EC 2.7.1.112) (C-FES).
101-145
295-322


PKFLT_HUMAN
RECEPTOR-RELATED TYROSINE KINASE FLT PRECURSOR (EC 2.7.1.112).
208-235
319-353


PKFMS_HUMAN
MACROPHAGE COLONY STIMULATING FACTOR 1 RECEPTOR PRECURSOR (CSF-1-R)
293-320


PKFYN_HUMAN
PROTO-ONCOGENE TYROSINE KINASE FLT PRECURSOR (EC 2.7.1.112) (P59-FYN)
199-233


PKGPB_HUMAN
CGMP-DEPENDENT PROTEIN KINASE, BETA ISOZYME (CGK) (EC 2.7.1.137).
17-54


PKHEK_HUMAN
TYROSINE KINASE HEK RECEPTOR PRECURSOR (EC 2.1.7.112).
646-673


PKINH_HUMAN
KINESIN HEAVY CHAIN.
125-155
425-452
471-542
633-680
689-716
872-899


PKKIT_HUMAN
KIT PROTO-ONCOGENE TYROSINE KINASE PRECURSOR (EC 2.7.1.112).
235-263


PKMET_HUMAN
HEPATOCYTE GROWTH FACTOR RECEPTOR PRECURSOR (MET PROTO-ONCOGENE
898-925


PKNH_HUMAN
KININOGEN, HMW PRECURSOR (ALPHA-2-THIOL PROTEINASE INHIBITOR)
505-532


PKP58_HUMAN
GALACTOSYLTRANSFERASE ASSOCIATED PROTEIN KINASE P58/GTA (EC 2.7.1.-)
81-108


PKP68_HUMAN
INTERFERON-INDUCED, DOUBLE-STRANDED RNA-ACTIVATED PROTEIN KINASE
149-179
191-225
285-312


PKP78_HUMAN
PUTATIVE SERINE/THREONINE-PROTEIN KINASE P78 (EC 2.7.1.-).
582-609


PKPCL_HUMAN
PROTEIN KINASE C, ETA TYPE (EC 2.7.1.-) (NPKC-ETA) (PKC-L).
318-345


PKPT1_HUMAN
SEINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-).
149-176
209-253


PKPY1_HUMAN
PYRUVATE KINASE, M1 (MUSCLE) ISOZYME (EC 2.7.1.40) (CYTOSOLIC THTROID
243-289


PKPY2_HUMAN
PYRUVATE KINASE, M2 ISOZYME (EC 2.7.1.40).
243-289


PKPYR_HUMAN
PYRUVATE KINASE, ISOZYME R (EC 2.7.1.40).
2-29


PKRET_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RET (EC 2.7.1.112).
183-217


PKROS_HUMAN
ROS PROTO-ONCOGENE TYROSINE KINASE (EC 2.7.1.112) (FRAGMENT).
157-203


PKSRC_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC (EC 2.7.1.112) (P60-SRC)
143-170


PKU7_HUMAN
LUPUS KU AUTOANTIGEN PROTEIN P70 (70 KD SUBUNIT OF KU ANTIGEN).
235-279


PKU86_HUMAN
LUPUS KU AUTOANTIGEN PROTEIN P86 (86 KD SUBUNIT OF KU ANTIGEN).
258-292


PKYES_HUMAN
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE YES (EC 2.7.1.112) (P61-YES)
209-243


PLAMI_HUMAN
LAMIN B1.
32-66
117-144
152-193
214-241
397-424
480-507
510-539


PLAMA_HUMAN
LAMIN A (70 KD LAMIN).
32-88
114-165
292-343


PLAMC_HUMAN
LAMIN C.
32-88
114-1665
292-343


PLAR_HUMAN
LAR PROTEIN PRECURSOR (LEUXCYTE ANTIGEN RELATED) (EC 3.1.3.48).
935-969


PLA_HUMAN
LUPUS LA PROTEIN (SJOGREN SYNDROME TYPE B ANTIGEN (SS-B)).
191-222
295-342


PLCAT_HUMAN
PHOSPHATIDYLCHOLINE-STEOL ACYLTRANSFERASE PRECURSOR (EC 2.3.1.43)
131-158


PLDHH_HUMAN
L-LACTATE DEHYDROGENASE H CHAIN (EC 1.1.1.27) (LDH-B).
81-108
302-329


PLDHM_HUMAN
L-LACTATE DEHYDROGENASE M CHAIN (EC 1.1.1.27) (LDH-A).
225-252


PLDLR_HUMAN
LOW-DENSITY LIPROTEIN RECEPTOR PRECURSOR.
483-510


PLECH_HUMAN
ASIALOGLYCOPROTEIN RECEPTOR 1 (HEPATIC LECTIN H1) (ASGPR).
62-96


PLEM3_HUMAN
P-SELECTIN PRECURSOR (GRANULE MEMBRANE PROTEIN 140) (GMP-140) (PADGEM)
32-59
87-116


PLGUL_HUMAN
LACTOYLGLUTATHIONE LYASE (EC 4.4.1.5) (METHYLGLYOXALASE)
83-117


PLIF_HUMAN
LEUKAEMIA INHIBITORY FACTOR PRECURSOR (LIF) (DIFFERENTIATION-
95-122


PLIN1_HUMAN
LINE-1 REVERSE TRANSCRIPTASE HOMOLOG.
152-179
232-263
298-358
671-698
874-901
1036-1066


PLIPG_HUMAN
TRIACYLGLYCEROL LIPASE PRECURSOR (EC 3.1.1.3) (LIPASE, GASTRIC).
158-185


PLIPS_HUMAN
HORMONE SENSITIVE LIPASE (EC 3.1.1.-) (HSL).
305-332


PLKHA_HUMAN
LEUKOTRIENE A-4 HYDROLASE (EC 3.3.2.6) (LTA-4 HYDROLASE) (LEUKOTRIENE
42-83
290-324


PLMA_HUMAN
LAMININ A CHAIN PRECURSOR.
1318-1345
1741-1771
1785-1812
1824-1851
1884-1921
1965-1999
2026-2059
2091-2118


PLMB1_HUMAN
LAMININ B) CHAIN PRECURSOR.
1267-1314
1364-1394
1597-1631
1651-1714
1722-1781


PLMB2_HUMAN
LAMININ B2 CHAIN PRECURSOR.
1103-1135
1513-1547


PLMP2_HUMAN
LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 2 PRECURSOR (LAMP-2).
155-182


PLOX2_HUMAN
ARACHIDONATE 12-LIPOXYGENASE (EC 1.13.11.31) (12-LOX).
341-368


PLOX5_HUMAN
ARACHIDONATE 5-LIPOXYGENASE (EC 1.13.11.34) (5-LIPOXYGENASE) (5-LO).
50-87


PLPH_HUMAN
LACTASE-PHLORIZIN HYDROLASE PRECURSOR (EC 3.2.1.108) (EC 3.2.1.62)
776-803


PLRPB_HUMAN
PROTEIN-TYROSINE PHOSPHATASE BETA PRECURSOR (EC 3.1.3.48) (PTP-BETA).
140-167
589-637


PLRPG_HUMAN
PROTEIN-TYROSINE PHOSPHATASE GAMMA PRECURSOR (EC 3.1.3.48)
1081-1108


PLRPZ_HUMAN
PROTEIN-TYROSINE PHOSPHATASE ZETA PRECURSOR (EC 3.1.3.48) (PTP-ZETA).
553-587
1024-1051
1973-2000


PLSHR_HUMAN
LUTROPIN-CHORIOGONADOTROPIC HORMONE RECEPTOR PRECURSOR (LH/CG-R)
66-114
448-480


PLV2B_HUMAN
IG LAMBDA CHAIN V-II REGION (NEI).
61-88


PLYAG_HUMAN
LYSOSOMAL ALPHA-GLUCOSIDASE PRECURSOR (EC 3.2.1.20) (ACID MALTASE).
885-912


PM2OM_HUMAN
MITOCHONDRIAL 2-OXOGLUTARATE/MALATE CARRIER PROTEIN (OGCP).
50-77


PMAC2_HUMAN
GALACTOSE-SPECIFIC LECTIN (MAC-2 ANTIGEN) (IGE-BINDING PROTEIN) (35 KD
219-246


PMAN9_HUMAN
MAN(9)-ALPHA-MANNOSIDASE (EC 3.2.1.-).
414-441


PMANA_HUMA
MANNOSE-6-PHOSPHATE ISOMERASE (EC 5.3.1.8) (PHOSPHOMANNOSE ISOMERASE)
60-87


PMANR_HUMA
MACROPHAGE MANNOSE ECEPTOR PRECURSOR.
248-284
1147-1182


PMAP2_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN 2 (FRAGMENT).
434-478


PMAP4_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN 4.
408-449


PMAX_HUMAN
MAX PROTEIN.
117-144


PMDM2_HUMA
MDM2 PROTEIN (P53-ASSOCIATED PROTEIN).
235-288


PMDR1_HUMAN
MULTIDRUG RESISTANCE PROTEIN 1 (P-GLYCOPROTEIN 1).
561-595


PMERL_HUMAN
MERLIN (SCHWANNOMIN).
377-407
532-566


PMERO_HUMAN
MEROSIN HEAVY CHAIN (LAMININ CHAIN A2) (FRAGMENT).
71-105
139-173
431-458
791-818


PMGMT_HUMA
METHYLATED-DNA-PROTEIN-CYSTEINE METHYLTRANSFERASE (EC 2.1.1.63) (6-O-
91-118


PMKLP_HUMAN
MITOTIC KINESIN-LIKE PROTEIN-1.
207-234


PMLCH_HUMAN
MELANIN-CONCENTRATING HORMONE PRECURSOR.
8-35


PMLK1_HUMAN
MIXED LINEAGE KINASE 1 (EC 2.7.1.-) (FRAGMENT).
130-157
321-348


PMMSA_HUMA
METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE
393-420


PMOES_HUMAN
MOESIN (MEMBRANE-ORGANIZING EXTENSION SPIKE PROTEIN).
119-146
351-403


PMPCP_HUMAN
MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN PRECURSOR.
286-313


PMP13_HUMAN
M-PHASE INDUCER PHOSPHATASE 3 (EC 3.1.3.48).
72-99


PMPKK_HUMAN
DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE (EC 2.7.1.-)
19-50


PMPRI_HUMAN
CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR PRECURSOR (CI MAN-6-
1569-1596
2437-2478


PMRP_HUMAN
MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN.
396-423
507-548


PMSHR_HUMAN
MELANOCYTE STIMULATING HORMONE RECEPTOR (MSH-R) (MELANOTROPIN
38-65


PMSRE_HUMAN
MACROPHAGE SCAVENGER RECEPTOR TYPES I AND II (MACROPHAGE ACETYLATED
173-204
230-260


PMTDM_HUMA
DNA (CYTOSINE-5)-METEYLTRANSFERASE (EC 2.1.1.37) (DNA
387-414
601-628


PMTF1_HUMAN
MITOCHONDRIALTRANSCRIPTION FACTOR I PRECURSOR (MTTF1)
181-212


PMUTA_HUMAN
METHYLMALONYL-COA MUTASE PRECURSOR (EC 5.4.99.2) (MCM).
468-519


PMX1_HUMAN
INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXA (INTERFERON-
108-150


PMX2_HUMAN
INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXB (P78-RELATED
451-489
670-697


PMYBA_HUMA
MYB-RELATED PROTEIN A (FRAGMENT).
619-646


PMYBB_HUMAN
MYB-RELATED PROTEIN B.
87-117


PMYCN_HUMA
N-MYC PROTO-ONCOGENE PROTEIN.
263-300
413-461


PMYC_HUMAN
MYC PROTO-ONCOGENE PROTEIN.
393-422


PMYF4_HUMAN
MYOGENIC FACTOR MYF-4 (MYOGENIN).
119-146


PMYF5_HUMAN
MYOGENIC FACTOR MYF-5.
121-148


PMYP2_HUMAN
MYELIN P2 PROTEIN.
70-110


PMYPR_HUMAN
MYELIN PROTEOLIPID PROTEIN (PLP) (LIPOPHILIN) (CONTAINS: MYELIN
43-70


PMYSA_HUMAN
MYOSIN HEAVY CHAIN, CARDIAC MUSCLE ALPHA ISOFORM (FRAGMENT).
38-75
84-111
137-178
236-324
398-435
440-485


PMYSB_HUMAN
MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM.
48-75
951-981
997-1044
1088-1122
1192-1234
1266-1332
1360-1408
1442-1479
1488-1532




1541-1582
1640-1681
1683-1710
1801-1838


PMYSE_HUMAN
MYOSIN HEAVY CHAIN, FAST SKELETAL MUSCLE, EMBRYONIC.
46-73
860-903
952-1077
1119-1146
1193-1235
1267-1340
1364-1411
1483-1597
1641-1675




1707-1734
1827-1858


PMYSP_HUMAN
MYOSIN HEAVY CHAIN, PERINATAL CARDIAC MUSCLE (FRAGMENT).
50-77
95-125
141-188
215-272
403-483
507-552
586-624
685-736
784-818




823-907
946-987
1049-1076


PMYSS_HUMAN
MYOSIN HEAVY CHAIN, SKELETAL MUSCLE (FRAGMENT).
133-160
193-280
304-349
423-460
468-526
581-608
645-681
743-798
808-835





846-873


PMYT1_HUMAN
MYELIN TRANSCRIPTION FACTOR 1 (MYT1) (FRAGMENT)
640-678


PNACA_HUMAN
SODIUM/CALCIUM EXCHANGER PRECURSOR (NA+/CA2+-EXCHANGE PROTEIN).
492-519
594-621
705-735


PNCA2_HUMAN
NEURAL CELL ADHESION MOLECULE, PHOSPHATIDYLINOSITOL-LINKED ISOFORM
255-282


PNCF1_HUMAN
NEUTROPHIL CYTOSOL FACTOR 1 (NCF-47K) (47 KD AUTOSOMAL CHRONIC
234-261
310-337


PNCF2_HUMAN
NEUTROPHIL NADPH OXIDASE FACTOR (P67-PHOX).
5-32


PNEFA_HUMAN
DNA-BINDING PROTEIN NEFA PRECURSOR.
50-77
82-112
343-395


PNEP_HUMAN
NEPRILYSIN (EC 3.4.24.11) (NEUTRAL ENDOPEPTIDASE) (NEP)
170-216
644-671


PNF1_HUMAN
NEUROFIBROMIN (NEUROFIBROMATOSIS-RELATED PROTEIN NF-1) (FRAGMENT).
1145-1172
1388-1422
1639-1666


PNFH_HUMAN
NEUROFILAMENT TRIPLET H PROTEIN (200 KD NEUROFILAMENT PROTEIN) (NF-H).
91-128
431-490


PNFL_HUMAN
NEUROFILAMENT TRIPLET L PROTEIN (68 KD NEUROFILAMENT PROTEIN) (NF-L).
92-126
441-468


PNFM_HUMAN
NEUROFILAMENT TRIPLET M PROTEIN (160 KD NEUROFILAMENT PROTEIN) (NF-M).
101-141
164-194
215-280
315-372
737-764
794-826
872-913


PNK1R_HUMAN
SUBSTANCE-P RECEPTOR (SPR) (NK-1 RECEPTOR) (NK-1R).
338-365


PNK4_HUMAN
NATURAL KILLER CELLS PROTEIN 4 PRECURSOR.
166-193


PNKCR_HUMAN
NK-RECOGNITION PROTEIN (NATURAL-KILLER CELLS CYCLOPHILIN-
187-214
448-475
559-599
701-742
816-843
1080-1133


PNKGA_HUMAN
NKG2-A AND NKG2-B TYPE II INTEGRAL MEMBANE PROTEINS.
28-55


PNOS1_HUMAN
NITRIC-OXIDE SYNTHASE, BRAIN (EC 1.14.13.39) (NOS, TYPE 1).
389-416
1116-1146
1292-1319


PNOS3_HUMAN
NITRIC-OXIDE SYNTHASE, ENDOTHELIAL (EC 1.14.13.39) (EC-NOS) (NOS,
389-416


PNTG1_HUMAN
SODIUM- AND CHLORIDE-DEPENDENT GABA TRANSPORTER 1.
131-158


PNTR_HUMAN
NEUROTENSIN RECEPTOR (NT-R).
57-84


PNTSE_HUMAN
SODIUM-DEPENDENT SEROTONIN TRANSPORTER (SHT TRANSPORTER) (SHTT).
71-98


PNTTA_HUMAN
SODIUM- AND CHLORIDE-DEPENDENT TAURINE TRANSPORTER.
120-147


PNU2M_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 2 (EC 1.6.5.3).
202-240


PNU4M_HUMAN
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (EC 1.6.5.3).
164-191
372-399


PNUBN_HUMAN
NUCLEBINDIN PRECURSOR.
46-73
360-387


PNUCL_HUMAN
NUCLEOLIN (PROTEIN C23).
462-508


PNY3R_HUMAN
PUTATIVE NEUROPEPTIDE Y RECEPTOR TYOE 3 (NPY3-R) (FB22) (NPYRL).
115-142


POAT_HUMAN
ORNITHINE AMINOTRANSFERASE PRECURSOR (EC 2.6.1.13) (ORNITHINE--OXO-
98-128


POC3A_HUMAN
OCTAMER-BINDING TRANSCRIOTION FACTOR 3A (OCT-3A).
139-173


POC3B_HUMAN
OCTAMER-BINDING TRANSCRIOTION FACTOR 3B (OCT-3B).
37-78


POCRL_HUMAN
LOWE'S OCULOCEREBRORENAL SYNDROME PROTEIN.
704-735


PODB2_HUMAN
LIPOAMIDE ACYLTRANSFERASE COMPONENT (E2) PRECURSOR OF BRANCHED-CHAIN
100-127
375-402


PODP2_HUMAN
DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT (E2) OF PYRUVATE
72-99


POMGP_HUMAN
OLIGODENDROCYTE-MYELIN GLYCOPROTEIN PRECURSOR (OMG).
53-80


POPSB_HUMAN
BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT).
220-247


POPSG_HUMAN
GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT).
90-117
239-266


POPSR_HUMAN
RED-SENSTTIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT).
90-117
239-266


POSTP_HUMAN
OSTEOPONTIN PRECURSOR (BONE SIALOPROTEIN 1) (URINARY STONE PROTEIN)
239-266


POTC_HUMAN
ORNITHINE CARBAMOYLTRANSFERASE PRECURSOR (EC 2.1.3.3).
170-204


POTNC_HUMAN
OSTEONECTIN PRECURSOR (BASEMENT MEMBRANE PROTEIN BM-40).
173-207


POXYB_HUMAN
OXYSTEROL-BINDING PROTEIN.
89-123
190-217
290-317
577-604


POXYR_HUMAN
OXYTOCIN RECEPTOR OT-R).
350-377


PP107_HUMAN
RETINOBLASTOMA-ASSOCIATED PROTEIN-LIKE 107 KD HOMOLOG (P107)
159-186
422-449


PPIDP_HUMAN
DNA POLYMERASE ALPHA HOLOENZYME-ASSOCIATED PROTEIN P1.
19-60
637-664


PP47_HUMAN
PLECKSTRIN (P47).
298-325


PP4HA_HUMAN
PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR (EC 1.14.11.2).
29-69
191-218


PP60_HUMAN
MITOCHONDRIAL MATRIX PROTEIN P1 PRECURSOR (P60 LYMPHOCYTE PROTEIN)
72-99
271-298
361-407


PP8SA_HUMAN
PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT (P13-KINASE
12-39
428-476
586-613
688-715


PPAP1_HUMAN
PANCREATITIS ASSOCIATED PROTEIN 1 PRECURSOR.
77-104


PPAX5_HUMAN
PAIRED BOX PROTEIN PAN-5 (B-CELL SPECIFIC TRANSCRIPTION FACTOR)
157-187


PPDGA_HUMAN
PLATELET-DERIVED GROWTH FACTOR, A CHAIN PRECURSOR (PDGF A-CHAIN)
38-65


PPECI_HUMAN
PLATELET ENDOTHELIAL CELL ADHESION MOLECULE PRECURSOR (PECAM-1)
685-719


PPENK_HUMAN
PROENKEPHALIN A PRECURSOR.
142-176


PPERE_HUMAN
EOSINOPHIL PEROXIDASE PRECURSOR (EC 1.11.1.7) (EPO) (FRAGMENT).
308-335


PPERF_HUMAN
PERFORIN I PRECURSOR (P1) (LYMPHOCYTE PORE FORMING PROTEIN) (PFP).
411-438


PPF4L_HUMAN
PLATELET BASIC PROTEIN PRECURSOR (PBP) (CONTAINS: CONNECTIVE-TISSUE
21-55


PPGCA_HUMAN
CARTILAGE-SPECIFIC PROTEOGLYCAN CORE PROTEIN PRECURSOR (CSPCP)
73-100


PPGCS_HUMAN
LARGE FIBROBLAST PROTEOGLYCAN PRECURSOR (VERSICAN) (CHONDROITIN
64-98
1390-1417
1553-1580


PPGDH_HUMAN
15-HYDROXYPROSTAGLANDIN DEHYDROGENASE (NAD(+)) (EC 1.1.1.141) (PGDH).
87-118


PPGDR_HUMAN
BETA PLATELET-DERIVED GROWTH FACTOR RECEPTOR PRECURSOR (EC 2.7.1.112).
294-321
354-384
465-495


PPGDS_HUMAN
ALPHA PLATELET-DERIVED GROWTH FACTOR RECEPTOR PRECURSOR
64-94
347-395
461-488
524-551
986-1058


PPGHS_HUMAN
PROSTAGLANDIN G/H SYNTHASE PRECURSOR (EC 1.14.99.1) (CYCLOOXYGENASE)
331-358


PPGS1_HUMAN
BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR (BIGLYCAN) (PG-S1).
100-127


PPH4H_HUMAN
PHENYLALANINE-4-HYDROXYLASE (EC 1.14.16.1) (PAH) (PHE-4-
239-266


PPHB_HUMAN
PROHIBITIN.
41-68


PPHOS_HUMAN
PHOSDUCIN (33 KD PHOTOTRANSDUCING PROTEIN) (MEKA PROTEIN).
184-225


PPHS1_HUMAN
GLYCOGEN PHOSPHORYLASE, LIVER FORM (EC 2.4.1.1).
116-143


PPHS2_HUMAN
GLYCOGEN PHOSPHORYLASE, MUSCLE FORM (EC 2.4.1.1).
532-559


PPHS3_HUMAN
GLYCOGEN PHOSPHORYLASE, BRAIN FORM (EC 2.4.1.1).
533-560


PPIP4_HUMAN
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE BETA 2
908-935


PPIP5_HUMAN
1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHIDIESTERASE GAMMA 2
142-169
239-266


PPLAK_HUMAN
PLAKOGLOBIN (DESMOPLAKIN III).
373-400


PPLSL_HUMAN
L-PLASTIN (FIMBRIN).
507-534


PPLST_HUMAN
T-PLASTIN (FIMBRIN).
510-561


PPM22_HUMAN
PERIPHERAL MYELIN PROTEIN 22 (PMP-22).
3-33


PPMGB_HUMAN
PHOSPHOGLYCERATE MUTASE, BRAIN FORM (EC 5.4.2.4) (PGAM-B) (EC 5.4.2.4)
81-111


PPMGM_HUMA
PHOSPHOGLYCERATE MUTASE, MUSCLE FORM (EC 5.4.2.4) (PGAM-M).
81-115


PPML1_HUMAN
PROBABLE TRANSCRIPTION FACTOR PML-1.
551-585


PPMLX_HUMAN
PROBABLE TRANSCRIPTION FACTOR PML-X.
551-585


PPMSC_HUMAN
AUTOANTIGEN PM-SCL.
103-130


PPOGA_HUMAN
DNA-BINDING PROTEIN PO-GA.
14-51
182-209
610-637
667-699


PPOL1_HUMAN
RETROVIRUS-RELATED POL POLYPROTEIN (REVERSE TRANSCRIPTASE
774-804


PPOL2_HUMAN
RETROVIRUS-RELATED POL POLYPROTEIN (FRAGMENT).
78-138
171-205


PPORI_HUMAN
OUTER MITOCHONDRIAL MEMBRANE PROTEIN PORIN (VOLTAGE-DEPENDENT) ANIO
33-76
189-216


PPPAP_HUMAN
PROSTATIC ACID PHOSPHATASE PRECURSOR (EC 3.1.3.2).
235-269


PPPAS_HUMAN
RED CELL ACID PHOSPHATASE 1, ISOZYME S (EC 3.1.3.2) (ACP1).
26-53


PPPOL_HUMAN
NAD(+) ADP-RIBOSYLTRANSFERASE (EC 2.4.2.30) (POLY(ASP-RIBOSE)
699-729
972-1003


PPRC2_HUMAN
PROTEASOME COMPONENT C2 (EC 3.4.99.46) (MACROPAIN SUBUNIT C2)
39-66


PPRC3_HUMAN
PROTEASOME COMPONENT C3 (EC 3.4.99.46) (MACROPAIN SUBUNIT C3)
34-61


PPRC9_HUMAN
PROTEASOME COMPONENT C9 (EC 3.4.99.46) (MACROPAIN SUBUNIT C9)
203-261


PPRGR_HUMAN
PROGESTERONE RECEPTOR (PR) (FORMS A AND B).
846-890


PPRTS_HUMAN
VITAMIN K-DEPENDENT PROTEIN S (BLOOD CLOTTING) PRECURSOR
337-371


PPRTZ_HUMAN
VITAMIN K-DEPENDENT PROTEIN Z PRECURSOR
29-56


PPSOR_HUMAN
PSORIASIN.
65-92


PPSPD_HUMAN
PULMONARY SURFACTANT-ASSOCIATED PROTEIN D PRECURSOR (PSP-D) (SP-D).
224-251


PPTHY_HUMAN
PARATHYROID HORMONE PRECURSOR (PARATHYRIN).
86-113


PPTN1_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 1B (EC 3.1.3.48) (PTP-1B).
136-177


PPTN2_HUMAN
T-CELL PROTEIN-TYROSINE PHOSPHATASE (EC 3.1.3.48) (TCPTP).
59-86
138-178


PPTN6_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 1C (EC 3.1.3.48) (PTP-1C) (HEMATOPOIETIC
227-261
512-580


PPTNB_HUMAN
PROTEIN-TYROSINE PHOSPHATASE 2C (EC 3.1.3.48) (PTP-2C) (PTP-1D)
41-68
218-245


PPTNC_HUMAN
PROTEIN-TYROSINE PHOSPHATASE G1 (EC 3.1.3.48) (PTPG1).
618-645
695-722


PPTRR_HUMAN
PARATHYROID HORMONE/PARATHYROID HORMONE-RELATED PEPTIDE
368-395


PPTX3_HUMAN
PENTAXIN-RELATED PROTEIN PTX3 PRECURSOR.
74-101


PPUR2_HUMAN
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE (EC 6.3.4.13) (GARS) (GLYCINAMIDE
803-830


PPUR6_HUMAN
MULTIFUNCTIONAL PROTEIN ADE2H1 (PHOSPHORIBOSYLAMINDIMIDAZOLE-
391-418


PPUR8_HUMAN
ADENYLOSUCCINATE LYASE (EC 4.3.2.2) (ADENYLOSUCCINASE) (ASL).
204-231


PPYR5_HUMAN
URIDINE 5′-MONOPHOSPHATE SYNTHASE (UMP SYNTHASE) (OROTATE
120-450


PPYRG_HUMAN
CTP SYNTHASE (EC 6.3.4.2) (UTP-AMMONIA LIGASE) (CTP SYNTHETASE).
86-113
300-334


PPZP_HUMAN
PREGNANCY ZONE PROTEIN PRECURSOR.
315-354
990-1024
1162-1189
1405-1432


PRA74_HUMAN
TRANSCRIPTION FACTOR IIF, ALPHA SUBUNIT (TFIIF, ALPHA SUBUNIT)
474-501


PRAB4_HUMAN
RAS-RELATED PROTEIN RAB-4.
38-65


PRAB6_HUMAN
RAS-RELATED PROTEIN RAB-6.
123-150


PRADI_HUMAN
RADIXIN.
308-335
414-463
510-537


PRB11_HUMAN
RAS-RELATED PROTEIN RAB-11 (24KG) (YL8).
151-178


PRBB3_HUMAN
RETINOBLASTOMA BINDING PROTEIN 3 (RBBP-3) (PRB-BINDING PROTEIN E2F-1)
129-156
161-223


PRDP_HUMAN
RD PROTEIN.
9-53


PRENI_HUMAN
RENIN PRECURSOR, RENAL (EC 3.4.23.15) (ANGIOTENSINOGENASE).
136-163


PREST_HUMAN
RESTIN (CYTOPLASMIC LINKER PROTEIN-170 ALPHA-2) (CLIP-170).
190-217
333-370
445-472
571-619
744-771
784-852
1023-1050
1088-1039
1157-1184




1216-1306


PRPA1_HUMAN
REPLICATION PROTEIN A 70 KD DNA-BINDING SUBUNIT (RP-A) (RF-A)
208-235
425-455


PRFP_HUMAN
TRANSFORMING PROTEIN (RFP) (RET FINGER PROTEIN).
183-217


PRH_HUMAN
BLOOD GROUP RH(D) POLYPEPTIDE.
361-388


PRIB1_HUMAN
RIBOPHORIN I PRECURSOR.
81-108
496-530


PRIB2_HUMAN
RIBOPHORIN II PRECURSOR
142-172
361-388


PRIR1_HUMAN
RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M1 CHAIN (EC 1.17.4.1)
42-69
370-400


PRL22_HUMAN
60S RIBOSOMAL PROTEIN L22 (EPSTEIN-BARR VIRUS SMALL RNA ASSOCIATED
78-112


PRL26_HUMAN
60S RIBOSOMAL PROTEIN L26.
55-89
103-137


PRL9_HUMAN
60S RIBOSOMAL PROTEIN L9.
146-192


PRLA0_HUMAN
60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E).
138-165


PRO5_HUMAN
52 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN (SS-A)).
190-235
238-265


PRO6_HUMAN
60 KD RO PROTEIN (SJOGREN SYNDROME TYPE A ANTIGEN (SS-A)).
192-245


PROC_HUMAN
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEINS C1/C2 (HNRNP C1 AND HNRNP
16-43


PROL_HUMAN
HETEROGENEOUS RIBONUCLEOPTOTEIN L (HRNPL).
501-528


PROU_HUMAN
HETEROGENOUS RIBONUCLEOPTOTEIN U.
630-657


PRPB1_HUMAN
DNA-DIRECTED RNA POLYMERASE II 215 KD POLYPEPTIDE
269-296
665-720
879-906
1314-1341
1371-1398


PRPB2_HUMAN
DNA-DIRECTED RNA POLYMERASE II 140 KD POLYPEPTIDE
626-667
1008-1035


PRPB3_HUMAN
DNA-DIRECTED RNA POLYMERASE II 33 KD POLYPEPTIDE
242-274


PRRXA_HUMAN
RETINOIC ACID RECEPTOR RXR-ALPHA.
318-352


PRRXB_HUMAN
RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 1.
376-403


PRRXC_HUMAN
RETINOIC ACID RECEPTOR RXR-BETA ISOFORM 2.
396-423


PRS12_HUMAN
40S RIBOSOMAL PROTEIN S12.
60-87


PRS16_HUMAN
40S RIBOSOMAL PROTEIN S16.
80-116


PRS25_HUMAN
40S RIBOSOMAL PROTEIN S25.
26-53


PRS27_HUMAN
40S RIBOSOMAL PROTEIN S27A.
14-41


PRS7_HUMAN
40S RIBOSOMAL PROTEIN S7 (S8).
73-100


PRS8_HUMAN
40S RIBOSOMAL PROTEIN S8
136-163


PRTC1_HUMAN
RAS-LIKE PROTEIN TC21.
123-150


PRU1A_HUMAN
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (U1 SNRNP A PROTEIN).
13-47


PRU2B_HUMAN
U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B′′.
17-44


PRYNR_HUMAN
RYANODINE RECEPTOR, SKELETAL MUSCLE
154-188
495-522
866-893
2750-2777
2820-2847
3304-3331
3529-3556
3912-3919
4921-4948


PS10A_HUMAN
S-100 PROTEIN, ALPHA CHAIN.
12-54


PS10B_HUMAN
S-100 PROTEIN, BETA CHAIN.
14-56


PS10D_HUMAN
S-100 PROTEIN.
31-58


PSAHH_HUMAN
ADENOSYLHOMOCYSTEINASE (EC 3.3.1.1) (S-ADENOSYL-L-HOMOCYSTEINE
389-416


PSAT1_HUMAN
DNA-BINDING PROTEIN SATB1.
709-736


PSCCA_HUMAN
SQUAMOUS CELL CARCINOMA ANTIGEN (SCCA) (PROTEIN T4-A).
78-105


PSCF_HUMAN
STEM CELL FACTOR PRECURSOR (SCF).
74-101


PSEM1_HUMAN
SEMENOGELIN I PROTEIN PRECURSOR (SGI) (CONTAINS: SEMINAL BASIC
64-98
176-226
288-329
334-368


PSEM2_HUMAN
SEMENOGELIN II PRECURSOR (SGII).
71-98
183-226
304-355
405-439
539-575


PSET_HUMAN
SET PROTEIN.
38-65
154-181


PSG1_HUMAN
SECRETOGRANIN I PRECURSOR (CHROMOGRANIN B).
144-178


PSG2_HUMAN
SECRETOGRANIN II PRECURSOR (CHROMOGRANIN C).
254-281
290-337
534-561


PSIAL_HUMAN
BONE SIALOPROTEIN II PRECURSOR (BSP II).
84-113
155-193
256-283


PSN2L_HUMAN
POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L.
231-258
545-572


PSNOB_HUMAN
SKI-RELATED ONCOGENE SNON.
414-441


PSPCA_HUMAN
SPECTRIN ALPHA CHAIN.
193-220
570-621
655-712
1099-1126
1461-1502
1882-1909 1988-2022
2120-2154
2223-2250




2346-2373


PSPCB_HUMAN
SPECTRIN BETA CHAIN, ERYTHROCYTE.
150-177
336-350
486-520
648-675
987-1021
1027-1083
1287-1324
1347-1374
1834-1861


PSPRE_HUMAN
SEPIAPTERIN REDUCTASE (EC 1.1.1.153) (SPR).
90-124


PSRF_HUMAN
SERUM RESPONSE FACTOR (SRF).
77-104
480-507


PSRPR_HUMAN
SIGNAL RECOGNITION PARTICLE RECEPTOR ALPHA SUBUNIT (SR-ALPHA)
76-110


PSSR1_HUMAN
SOMATOSTATIN RECEPTOR TYPE 1.
289-316


PSTHM_HUMAN
STATHMIN (PHOSPHOPROTEIN P19) (ONCOPROTEIN P18) (LEUKEMIA-ASSOCIATED
47-74


PSUIS_HUMAN
SUCRASE-ISOMALTASE, INTESTINAL (EC 3.2.1.48)/(EC 3.2.1.10).
1748-1775


PSYB1_HUMAN
SYNAPTOBREVIN 1.
31-67


PSYD2_HUMAN
ASPARTYL-TRNA SYNTHETASE ALPHA-2 SUBUNIT (EC 6.1.1.12) (ASPARTATE-
44-71


PSYEP_HUMAN
MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE (CONTAINS: GLUTAMYL-TRN
174-201
740-771


PSYH_HUMAN
HISTIDYL-TRNA SYNTHETASE (EC 6.1.1.21) (HISTIDINE-TRNA LIGASE).
380-442
468-502


PSYTI_HUMAN
SYNAPTOTAGMIN I (P65).
140-167
250-277


PSYTC_HUMAN
THREONYL-TRNA SYNTHETASE, CYTOPLASMIC (EC 6.1.1.3) (THREONINE-TRNA
497-524
658-615


PSYV_HUMAN
VALYL-TRNA SYNTHETASE (EC 6.1.1.9) (VALINE-TRNA LIGASE) (VALRS).
230-257
413-440


PSYW_HUMAN
TRYPTOPHANYL-TRNA SYNTHETASE (EC 6.1.1.2) (TRYPTOPHAN-TRNA LIGASE)
93-127
196-223


PT2EB_HUMAN
TRANSCRIPTION INITIATION FACTOR IIE-BETA CHAIN (TFIIE-BETA).
34-68


PTAP4_HUMAN
TRANSCRIPTION FACTOR AP-4 (FRAGMENT).
169-196
245-272


PTAPB_HUMAN
TRANSCRIPTION FACTOR JUN-B.
296-323


PTAPD_HUMAN
TRANSCRIPTION FACTOR JUN-D.
291-333


PTAU1_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN TAU.
278-305


PTAU2_HUMAN
MICROTUBULE-ASSOCIATED PROTEIN TAU, FETAL.
211-238


PTCO1_HUMAN
TRANSCOBALAMIN I PRECURSOR.
201-241
330-357


PTCP1_HUMAN
T-COMPLEX PROTEIN 1 (TCP-1).
316-343


PTDT_HUMAN
DNA NUCLEOTIDYLEXOTRANSFERASE (EC 2.7.7.31) (TERMINAL ADDITIONENZYME)
61-95


PTEK_HUMAN
RECEPTOR TYROSINEPROTEIN KINASE TEK PRECURSOR (EC 2.7.1.112) (HPK-6).
664-678
968-996
1007-1036


PTF2B_HUMAN
TRANSCRIPTION INITIATION FACTOR IIB (TFIIB).
135-162


PTFE3_HUMAN
TRANSCRIPTION FACTOR E3 (FRAGMENT).
43-70
122-149
1780-226


PTFS2_HUMAN
TRANSCRIPTION ELONGATION FACTOR S-II.
29-56


PTF_HUMAN
TISSUE FACTOR PRECURSOR (TF) (CALGULATION FACTOR III).
148-175


PTGF1_HUMAN
TRANSFORMING GROWTH FACTOR BETA 1 PRECURSOR (TGF-BETA 1).
148-185


PTGF2_HUMAN
TRANSFORMING GROWTH FACTOR BETA 2 PRECURSOR (TGF-BETA 2) (GLIOBLASTO
243-270


PTGFA_HUMAN
TRANSFORMING GROWTH FACTOR ALPHA PRECURSOR (TGF-ALPHA) (EGF-LIKE TGH
87-114


PTGLK_HUMAN
PROTEIN-GLUTAMINE GAMMA-GLUTAMYL TRANSFERASE K (EC 2.3.2.13)
258-285


PTHBS_HUMAN
THROMBOSPONDIN PRECURSOR.
110-165
284-314


PTHIK_HUMAN
3-KETOACYL-COA THIOLASE PEROXISOMAL PRECURSOR (EC 2.3.1.16) (BETA-
185-212


PTKNB_HUMAN
PROTACHYKININ BETA PRECURSOR (CONTAINS: SUBSTANCE P. NEUROKININ
11-38


PTLE1_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 1.
626-653


PTLE2_HUMAN
TRANSOUCIN-LIKE ENHANCER PROTEIN 2.
94-125


PTLE4_HUMAN
TRANSDUCIN-LIKE ENHANCER PROTEIN 4 (FRAGMENT).
304-331


PTOPA_HUMAN
DNA TOPOISOMERASE II, ALPHA ISOZYME (EC 5.99.1.3).
19-46
503-532


PTOPB_HUMAN
DNA TOPOISOMERASE II, BETA ISOZYME (EC 5.99.1.3).
35-65
616-647


PTPM3_HUMAN
TROPOMYOSIN, FIBROBLAST ISOFORM TM3.
16-74
82-116


PTPMA_HUMAN
TROPOMYOSIN ALPHA CHAIN, SKELETAL MUSCLE.
16-43
47-74
82-116
147-174
191-237
243-277


PTPMB_HUMAN
TROPOMYOSIN BETA CHAIN, SKELETAL MUSCLE.
37-116
193-240


PTPMC_HUMAN
TROPOMYOSIN ALPHA CHAIN, CARDIAC MUSCLE.
16-74
82-116
193-277


PTPMF_HUMAN
TROPOMYOSIN, FIBROBLAST AND EPITHELIAL MUSCLE-TYPE (TM36) (TMEI)
37-116
210-240
243-270


PTPMG_HUMAN
TROPOMYOSIN, FIBROBLAST NON-MUSCLE TYPE (TM30PL).
46-80
111-138
158-199
207-234


PTPMI_HUMAN
TROPOMYOSIN, CYTOSKELETAL TYPE (TM30NM).
46-80
111-138
172-199


PTPMS_HUMAN
TROPOMYOSIN ALPHA CHAIN, SMOOTH MUSCLE (FRAGMENT).
25-59
147-178


PTPP2_HUMAN
TRIPEPTIDYL-PEPTIDASE II (EC 3.4.14.10) (TPP II) (TRIPEPTIDYL
153-187
1004-1031
1160-1187


PTPR_HUMAN
TPR ONCOGENE (FRAGMENT).
82-147


PTR36_HUMAN
TREB36 PROTEIN.
18-45
242-269


PTRFR_HUMAN
THYROTROPIN-RELEASING HORMONE RECEPTOR (TRH-R) (THYROLIBERIN
349-383


PTRIC_HUMAN
TROPONIN I, CARDIAC MUSCLE.
36-63


PTRKA_HUMAN
HIGH AFFINITY NERVE GROWTH FACTOR RECEPTOR PRECURSOR (EC 2.7.1.112)
66-93
117-148


PTRSR_HUMAN
TRANSFERRIN RECEPTOR PROTEIN (TR) (ANTIGEN CD71) (T9).
188-215
366-393


PTSHR_HUMAN
THYROTROPIN RECEPTOR PRECURSOR (TSH-R).
87-117
420-447


PTTK_HUMAN
PROTEIN KINASE TKK (EC 2.7.1.-).
170-197
324-359
510-544
549-583


PTYK2_HUMAN
NON-RECEPTOR TYROSINE-PROTEIN KINASE TYK2 (EC 2.7.1.112).
150-177


PUBA1_HUMAN
UBIQUTTIN-ACTIVATING ENZYME E1 (A159 PROTEIN).
448-475


PUEF1_HUMAN
NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR 1) (UBF-1).
227-254


PUDP0_HUMAN
UDP-GLUCURONOSYLTRANSFERASE PRECURSOR, MICROSOMAL (EC 2.4.1.17)
227-254


PUFO_HUMAN
RECEPTOR TYROSINE-PROTEIN KINASE UFO PRECURSOR (EC 2.7.1.112).
488-522


PUSF1_HUMAN
UPSTREAM STIMULATORY FACTOR 1.
251-295


PVATC_HUMAN
VACUOLAR ATP SYNTHASE SUBUNIT C (EC 3.6.1.34)(V-ATPASE C SUBUNIT).
47-74
117-147


PYIL1_HUMAN
VILLIN.
338-372
427-461
717-744


PVIME_HUMAN
VIMENTIN.
119-146
233-260


PVINC_HUMAN
VINCULIN.
108-135


PVPRT_HUMAN
RETROVIRUS-RELATED PROTEASE (EC 3.4.23.-).
95-134


PWEE1_HUMAN
WEE1-LIKE PROTEIN KINASE (EC 2.7.1.112).
354-388


PWT1_HUMAN
HUMAN WILMS' TUMOR PROTEIN (WT33).
247-274


PXBP1_HUMAN
X BOX BINDING PROTEIN-1 (XBP-1) (TREB5 PROTEIN).
97-135


PXPAC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-A CELLS (XERODERMA PIGMENTOSUM
180-211


PXPCC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-C CELLS (XERODERMA PIGMENTOSUM
134-168
701-728


PXPDC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-D CELLS (XERODERMA PIGMENTOSUM
264-291


PXPGC_HUMAN
DNA-REPAIR PROTEIN COMPLEMENTING XP-G CELLS (XERODERMA PIGMENTOSUM
83-110
715-766
1047-1081


PXRCC_HUMAN
DNA-REPAIR PROTEIN XRCC1.
23-57


PZN10_HUMAN
ZINC FINGER PROTEIN 10 (ZINC FINGER PROTEIN KOXI) (FRAGMENT).
29-56


PZN40_HUMAN
ZINC FINGER PROTEIN 40 (HUMAN IMMUNODEFICIENCY VIRUS TYPE I ENHANCER-
17-62
307-334
1071-1098
1469-1500
2013-2057
2146-2180


PZN45_HUMAN
ZINC FINGER PROTEIN 45 (BRC1744) (FRAGMENT).
3-30
201-228


PZN46_HUMAN
ZINC FINGER PROTEIN 46 (ZINC FINGER PROTEIN KUP).
121-149
















TABLE X







Search Results Summary for PCTLZIP, P1CTLZIP, and P2CTLZIP Motifs









PCTLZIP
P1CTLZIP
P2CTLZIP


LIBRARY FILE
LIBRARY FILE
LIBRARY FILE




















PENV_FOAMV
481-496

PENV_BIV06
434-450



PENV_BIV06
525-542



PENV_HV1MA
438-453

PENV_BIV27
463-479



PENV_BIV27
554-571


PENV_HV1MF
183-198

PENV_FOAMV
481-496
864-880


PENV_FENV1
30-47
630-647


PENV_HV1RH
445-460

PENV_HV1KB
752-768



PENV_FIVPE
781-795


PENV_HV18C
186-201

PENV_HV1MA
437-463



PENV_FIVSD
779-796


PENV_HV1Z2
123-138

PENV_HV1MF
183-198



PENV_FIVT2
780-797


PENV_HV1ZH
438-453

PENV_HV1RH
444-460



PENV_FLVC8
38-55
624-641


PENV_HV2BE
760-785

PENV_HV1S1
738-754



PENV_FLVGL
605-622


PENV_HV2D1
741-756

PENV_HY1SC
186-201



PENV_FLVLB
625-642


PENV_HV2G1
741-756

PENV_HV1Z2
123-138



PENV_FLVBA
602-619


PENV_HV2NZ
742-757

PENV_HY1Z3
117-133



PENV_FOAMV
710-727
957-974


PENV_HV2RO
761-788

PENV_HV1ZH
437-453



PENV_FSVGA
625-642


PENV_HV2SB
743-768

PENV_HV2BE
750-765



PENV_FSVGB
605-622


PENV_HV2ST
746-780

PENV_HV2D1
741-756



PENV_FSVBM
608-625


PENV_JSRV
104-119

PENV_HV2G1
741-756



PENV_HV1OY
123-140


PENV_MMTVB
818-833

PENV_HV2NZ
742-757



PENV_HV1Z2
410-427


PENV_MMTVG
818-833

PENV_HY2RO
751-766



PENV_HV1Z3
154-171


PENV_SIVMK
139-164

PENV_HV2SB
743-758



PENV_HV2CA
760-767


PENV_SIVML
139-154

PENV_HV2ST
746-780



PENV_MCFF
600-617


PHEMA_CVBLY
391-408

PENV_JSRV
104-119
541-557


PENV_MCFF3
601-618


PHEMA_CVBM
391-408

PENV_MCFF
397-413



PENV_MLVAV
630-647


PHEMA_CVBQ
391-408

PENV_MCFF3
397-413



PENV_MLVCB
625-642


PHEMA_CVHOC
391-408

PENV_MLVAV
427-443



PENV_MLVF5
639-656


PHEMA_CVMA5
402-417

PENV_MLVCB
422-438



PENV_MLVFF
639-656


PHEMA_CVMS
403-418

PENV_MLVHO
423-439



PENV_MLVFP
639-656


PHEMA_INBAA
296-310

PENV_MLVMO
426-442



PENV_MLVHO
626-643


PHEMA_INBBE
303-318

PENV_MLVRD
424-440



PENV_MLVKI
167-184


PHEMA_INBBO
293-308

PENV_MLVRK
424-440



PENV_MLVMO
829-846


PHEMA_INBEN
301-318

PENV_MMTVB
616-633



PENV_MLVRD
824-841


PHEMA_INBFU
288-301

PENV_MMTVG
618-633



PENV_MLVRK
824-841


PHEMA_INBGL
298-311

PENV_SFV1
864-880



PENV_MSVFB
170-187


PHEMA_INBHK
293-308

PENV_SFV3L
861-877



PENV_RMCFV
603-620


PHEMA_INBIB
288-303

PENV_SIVGB
 93-109



PENV_SFV1
710-727
957-974


PHEMA_INBIO
299-314

PENV_SIVMK
139-154
802-818


PENV_SFV3L
707-724
954-971


PHEMA_INBLE
302-317

PENV_SIVML
139-154
801-817


PENV_SIVM1
766-783


PHEMA_INBMD
292-307

PENV_SIVS4
806-822



PENV_SIVMK
765-782


PHEMA_INBME
298-311

PENV_SIVSP
810-828



PENV_SIVML
764-781


PHEMA_INBNA
288-303

PHEMA_CDVO
36-52



PENV_SIVS4
769-786


PHEMA_INBOR
301-316

PHEMA_CVBLY
391-406



PENV_SIVSP
773-790


PHEMA_INSSI
301-316

PHEMA_CVBM
391-406



PENV_SMRVH
536-553


PHEMA_INSSJ
298-313

PHEMA_CVBQ
391-406



PENV_SMSAV
42-59


PHEMA_INBUS
294-309

PHEMA_CVHOC
391-406



PHEMA_CDVO
36-53
200-217


PHEMA_INBVI
298-311

PHEMA_CVMA5
402-417



PHEMA_CVBLY
391-408


PHEMA_INBVK
303-318

PHEMA_CVMS
403-418



PHEMA_CVBM
391-408


PHEMA_INBYB
288-301

PHEMA_IAAIC
237-253



PHEMA_CVBQ
391-408


PHEMA_MUMPM
133-148

PHEMA_IABAN
221-237



PHEMA_CVHOC
391-408


PHEMA_MUMPR
133-148

PHEMA_IABUD
234-250



PHEMA_IAAIC
322-339


PHEMA_MUMPS
133-148

PHEMA_IACKA
234-250



PHEMA_IABAN
308-323


PHEMA_PI1HW
345-380

PHEMA_IACKG
231-247



PHEMA_IABUD
320-337


PHEMA_PI2H
65-80

PHEMA_IACKV
230-246



PHEMA_IACKA
320-337


PHEMA_PI2HT
65-80

PHEMA_IADA1
234-250



PHEMA_IACKG
318-333


PHEMA_RINDK
366-383

PHEMA_IADA3
237-253



PHEMA_IACKP
302-319


PHEMA_SV5
 7-94

PHEMA_IADCZ
234-250



PHEMA_IACKQ
302-319


PHEMA_SV5CM
 7-94

PHEMA_IADH1
221-237



PHEMA_IACKS
319-336


PHEMA_SV5CP
 7-94

PHEMA_IADH2
221-237



PHEMA_IACKV
315-332


PHEMA_SV5LN
 7-94

PHEMA_IADH3
221-237



PHEMA_IADA1
320-337


PVENV_DHVI1
42-57

PHEMA_IADH4
221-237



PHEMA_IADA3
322-339


PVFP7_CAPVK
 89-104

PHEMA_IADH5
221-237



PHEMA_IADCZ
320-337


PVFUS_VACC8
72-87

PHEMA_IADH6
221-237



PHEMA_IADH1
306-323


PVG01_BPP22
242-257

PHEMA_IADH7
221-237



PHEMA_IADH2
306-323


PVG01_HSVEB
169-184

PHEMA_IADM2
237-253



PHEMA_IADH3
306-323


PVG01_HSVI1
210-225
317-332
PHEMA_IADNZ
234-250



PHEMA_IADH4
306-323


PVG06_BPT4
194-199

PHEMA_IAEN6
221-237



PHEMA_IADH6
306-323


PVG07_BPT4
885-900

PHEMA_IAEN7
237-253



PHEMA_IADH7
306-323


PVG08_HSVI1
134-149

PHEMA_IAFPR
230-248



PHEMA_IADM2
322-338


PVG10_BPPH2
183-198

PHEMA_IAHAL
236-252



PHEMA_IADNZ
320-337


PVG10_BPPZA
183-198

PHEMA_IAHAR
235-251



PHEMA_IADU3
322-339


PVG10_HSVSA
109-124

PHEMA_IAHC6
230-248



PHEMA_IAEN6
306-323


PVG16_BPP1
81-96

PHEMA_IAHC7
230-248



PHEMA_IAEN7
322-339


PVG18_BPT4
468-483

PHEMA_IAHCD
230-248



PHEMA_IAFPR
315-332


PVG25_BPT4
 97-112

PHEMA_IAHDE
230-248



PHEMA_IAGRE
320-337


PVG29_HSVI1
20-35

PHEMA_IAHFO
238-252



PHEMA_IAGU2
320-337


PVG30_BPPHS
11-94

PHEMA_IAHK8
238-252



PHEMA_IAGUA
319-338


PVG36_BPOX2
22-37

PHEMA_IAHK7
238-252



PHEMA_IAHAL
321-338


PVG38_HSVSA
108-123

PHEMA_IAHLE
230-246



PHEMA_IAHC8
315-332


PVG37_BPT2
1253-

PHEMA_IAHLO
230-246



PHEMA_IAHC7
315-332



1288


PVG37_HSVI1
284-299

PHEMA_IAHMI
238-252



PHEMA_IAHDE
315-332


PVG55_HSVI1
22-37
143-158
PHEMA_IAHNM
238-252



PHEMA_IAHDE
315-332


PVG66_HSVI1
268-283

PHEMA_IANRO
238-252



PHEMA_IAHFO
321-338


PVG68_HSVI1
102-117

PHEMA_IAHSA
238-252



PHEMA_IAHK6
321-338


PVG69_HSVI1
267-282

PHEMA_IAHSP
230-248



PHEMA_IAHK7
321-338


PVG86_HSVI1
518-533

PHEMA_IAHSW
230-248



PHEMA_IAHLE
315-332


PVG9_BPPH2
234-249

PHEMA_IAHTE
238-252



PHEMA_IAHLO
315-332


PVG9_BPPZA
234-249

PHEMA_IAHTO
238-252



PHEMA_IAHMI
321-336


PVG9_BPV1R
57-72

PHEMA_IAHUR
238-252



PHEMA_IAHNM
321-338


PVGF_BPPHX
234-249

PHEMA_IAKIE
238-251



PHEMA_IAHNN
315-332


PVGL2_CVBF
284-279

PHEMA_IALEN
235-251



PHEMA_IAHPR
315-332


PVGL2_CVBL9
284-279

PHEMA_IAMAA
233-249



PHEMA_IAHBA
321-338


PVGL2_CVBLY
284-279

PHEMA_IAMAB
238-254



PHEMA_IAHBA
321-338


PVGL2_CVBM
284-279

PHEMA_IAMAO
237-253



PHEMA_IAHSP
315-332


PVGL2_CVBQ
284-279

PEHMA_IAME1
237-253



PHEMA_IAHSW
315-332


PVGL2_CVBV
284-279

PHEMA_IAME2
237-253



PHEMA_IAHTE
321-336


PVGL2_CVPFS
442-457

PHEMA_IAME6
221-237



PHEMA_IAHTO
321-336


PVGL2_CVPPU
440-485
504-519
PHEMA_IAMIN
 85-101
231-247


PHEMA_IAHUR
321-336


PVGL2_CVPRS
218-233

PHEMA_IANTS
237-253



PHEMA_IAJAP
317-334


PVGL2_CVPRM
218-233

PHEMA_IAQU7
221-237



PHEMA_IAMAA
319-336


PVGL2_IBVS
1056-

PHEMA_IARUD
234-250



PHEMA_IAMAB
324-341



1071


PVGL2_IBVB
1055-

PHEMA_IASE2
234-250



PHEMA_IAMAO
322-339



1070


PVGL2_IBVD2
1056-

PHEMA_IASH2
234-250



PHEMA_IAME1
322-339



1071


PVGL2_IBVK
1055-

PHEMA_IASTA
230-246



PHEMA_IAME2
322-339



1070


PVGL2_IBVM
1055-

PHEMA_IATAI
235-251



PHEMA_IAME6
308-323



1070


PVGLB_HSVSA
701-716

PHEMA_IATKM
234-250



PHEMA_IAMIN
316-333


PVGLB_PRVIF
203-218

PHEMA_IATKO
233-249



PHEMA_IANT6
322-339


PVGLC_HSVBC
475-490

PHEMA_IATKR
230-246



PHEMA_IAPIL
320-337


PVGLC_HSVE4
444-469

PHEMA_IATKW
229-245



PHEMA_IAQU7
306-323


PVGLC_HSVEB
427-442

PHEMA_IAUDO
237-253



PHEMA_IARUD
320-337


PVGLC_PRVIF
448-461

PHEMA_IAUSS
235-251



PHEMA_IASE2
320-337


PVGLD_HSV11
79-94

PHEMA_IAVI7
236-254



PHEMA_IASH2
321-338


PVGLD_HSV2
79-94

PHEMA_IAXIA
235-251



PHEMA_IASTA
315-332


PVGLF_BRSVA
265-280

PHEMA_IAZCO
237-253



PHEMA_IATKM
320-337


PVGLF_BRSVC
265-280

PHEMA_IAZH2
221-237



PHEMA_IAUDO
322-339
380-397


PVGLF_BRSVR
265-280

PHEMA_IAZH3
221-237



PHEMA_IAVI7
323-340


PVGLF_HRSV1
265-280

PHEMA_IAZUK
237-263



PHEMA_IAZCO
322-339


PVGLF_HRSVA
265-280

PHEMA_INBAA
115-131
296-310


PHEMA_IAZH2
306-323


PVGLF_HRSVL
265-280

PHEMA_INBBE
123-139
303-318


PHEMA_IAZH3
306-323


PVGLF_HRSVR
265-280

PHEMA_INBBO
116-132
293-308


PHEMA_IAZUK
322-339


PVGLF_MUMPS
 6-94

PHEMA_INBEN
123-139
301-318


PHEMA_MUMPM
101-118


PVGLI_VZVD
276-293

PHEMA_INBFU
108-124
288-301


PHEMA_MUMPR
101-118


PVGLM_HANTB
900-915

PHEMA_INBGL
119-135
298-311


PHEMA_MUMPS
101-118


PVGLM_PTPV
743-768

PHEMA_INBHK
116-132
293-308


PHEMA_NDVA
 93-110


PVGLM_SEOUR
901-916

PHEMA_INBIB
108-124
288-303


PHEMA_NDVB
 93-110


PVGLM_SEOUS
900-915

PHEMA_INBID
120-136
299-314


PHEMA_NDVD
 93-110


PVGLY_LASSG
426-441

PHEMA_INBLE
123-139
302-317


PHEMA_NDVH
 93-110


PVGLY_LASSJ
427-442

PHEMA_INBMD
113-129
292-307


PHEMA_NDVI
 93-110


PVGLY_MOPEI
426-440

PHEMA_INBME
116-132
298-311


PHEMA_NDVM
 93-110


PVM3_REOVD
521-538

PHEMA_INBNA
108-124
288-303


PHEMA_NDVQ
 93-110


PVMSA_HPBGS
380-395

PHEMA_INBOR
123-139
301-316


PHEMA_NDVTG
 93-110


PVMSA_HPBV9
187-202

PHEMA_INBBI
123-139
301-316


PHEMA_NDVU
 93-110


PVMSA_WHV1
378-393

PHEMA_INBSJ
119-135
298-313


PHEMA_PHODV
36-53


PVMSA_WHV59
383-398

PHEMA_INBUS
116-132
294-309


PHEMA_PI1HW
486-603


PVMSA_WHV7
383-398

PHEMA_INBVI
116-182
296-311


PHEMA_PI3B
111-128


PVMSA_WHV8
383-398

PHEMA_INBVK
123-139
303-318


PHEMA_PI3H4
111-128


PVMSA_WHV8I
383-398

PHEMA_INBYB
108-124
288-301


PHEMA_PI3HA
111-128


PVMSA_WHVWB
234-249

PHEMA_MUMPM
133-148



PHEMA_PI3HT
111-128


PVMT2_IAANN
25-40

PHEMA_MUMPR
133-148



PHEMA_PI3HU
111-128


PVMT2_IABAN
25-40

PHEMA_MUMPS
133-148



PHEMA_PI3HV
111-128


PVMT2_IAFOW
25-40

PHEMA_PI1HW
345-360



PHEMA_PI3HW
111-128


PVMT2_IAFPR
25-40

PHEMA_PI2H
65-81



PHEMA_PI3HX
111-128


PVMT2_IAFPW
25-40

PHEMA_PI2HT
65-81



PHEMA_PI4HA
50-67


PMVT2_IALE1
25-40

PHEMA_PI3B
324-340



PHEMA_SV41
 85-102


PVMT2_IALE2
25-40

PHEMA_PI3H4
324-340



PHEMA_SV5
 84-101


PVMT2_IAMAN
25-40

PHEMA_PI3HA
324-340



PHEMA_SV5CM
 84-101


PVMT2_IAPUE
25-40

PHEMA_PI3HT
324-340



PHEMA_SV5CP
 84-101


PVMT2_IASIN
25-40

PHEMA_PI3HU
324-340



PHEMA_SV5LN
 84-101


PVMT2_IAUDO
25-40

PHEMA_PI3HV
324-340



PVF05_VACCC
280-297


PVMT2_IAWIL
25-40

PHEMA_PI3HW
324-340



PVF06_VACCP
280-297


PVMT9_MYXVL
226-241

PHEMA_PI3HX
324-340



PVF08_VACCV
281-298





PHEMA_RINDK
368-383



PVF09_VACCC
176-193





PHEMA_SV5
 7-94



PVF09_VACCV
176-193





PHEMA_SV5CM
 7-94



PVG27_HSVSA
209-226





PHEMA_SV5CP
 7-94



PVG28_HSVI1
173-190





PHEMA_SV5LN
 7-94



PVG39_HSVI1
884-886





PVENV_DHVI1
42-57



PVG43_HSVI1
109-126
521-538





PVENV_EAV
26-41



PVG67_HSVI1
171-188





PVFP2_FOWPV
 88-104



PVG72_HSVI1
1252-











1289





PVFP7_CAPVK
 89-104



PVGF1_IBVB
3073-











3090





PVFUS_VACC6
72-87



PVGL2_IBVB
1094-











1111





PVG01_HSVEB
169-184



PVGLB_HSVE1
736-763





PVG01_HSVI1
209-225
317-332


PVGLB_HSVE4
675-692





PVG08_HSVI1
134-149



PVGLB_HSVEA
736-753





PVG10_HSVSA
109-124



PVGLB_HSVEB
736-753





PVG11_HSVI1
103-119



PVGLB_HSVEL
736-763





PVG12_HSVI1
270-288



PVGLB_ILTV8
597-614





PVG1_SPV1R
78-92



PVGLB_ILTVS
607-624





PVG29_HSVI1
20-35



PVGLB_ILTVT
607-624





PVG88_BPOX2
22-37



PVGLC_PRVIF
180-197





PVG36_HSVSA
108-123



PVGLE_VZVD
469-488





PVG37_HSVI1
284-299



PVGLF_SV5
401-418





PVG41_HSVI1
244-260



PVGLH_HCMVA
385-382





PVG46_HSVI1
1244-1260



PVGLH_HCMVT
364-381





PVG55_HSVI1
22-37
143-158


PVGLH_HSVI1
245-262
803-820





PVG58_HSVI1
268-283



PVGLH_HSV1E
245-262
803-820





PVG58_HSVI1
101-117



PVGLI_HSVI1
43-60





PVG58_HSVSA
130-146
330-346


PVGLM_BUNL7
81-98





PVG59_HSVI1
267-282



PVGLM_BUNSH
81-98





PVG65_HSVI1
362-378
518-533


PVGLM_PUUMH
712-729





PVG71_HSVSA
 89-105



PVGLM_PUUMB
712-729





PVG9_BPPH2
234-249



PVGLM_RVFV
344-361





PVG8_BPPZA
234-249



PVGLM_RVFVZ
344-361





PVG9_SPV1R
57-72



PVGLY_LASSG
12-94





PVGF1_IBVB
2210-2228



PVGLY_LASSJ
12-94





PVGL2_CVBF
123-139
174-190
264-279

PVGLY_LYCVA
12-94





PVGL2_CVBL9
123-139
174-190
264-279

PVGLY_LYCVW
12-94





PVGL2_CVBLY
123-139
174-190
264-279

PVGLY_MOPEI
12-94





PVGL2_CVBM
123-139
174-190
264-279

PVM1_REOVD
280-297





PVGL2_CVBQ
31-47
123-139
174-190
264-279
PVM1_REOVL
280-297





PVGL2_CVBV
123-139
174-190
264-279

PVMAT_CDVO
148-165





PVGL2_CVM4
 95-111
1267-1283


PVMAT_MEASI
 87-104





PVGL2_CVMA5
 95-111
1215-1231


PVMP_CAMVC
147-164





PVGL2_CVMJH
 95-111
1126-1142


PVMP_CAMVD
147-164





PVGL2_CVPFS
442-457
800-818
1274-1290

PVMP_CAMVE
147-164





PVGL2_CVPPU
440-455
504-519
798-814
1272-1288
PVMP_CAMVN
147-164





PVGL2_CVPR8
218-233
576-592
1050-1066

PVMP_CAMVS
147-164





PVGL2_CVPRM
218-233
578-592
1050-1066

PVMP_CAMVW
147-164





PVGL2_FIPV
803-819
1277-1293


PVMSA_HPBV0
11-94





PVGL2_IBV8
1056-1071



PVMSA_HPBV2
185-202





PVGL2_IBVB
1055-1070



PVMSA_HPBV4
185-202





PVGL2_IBVD2
1056-1071



PVMSA_HPBVA
174-191





PVGL2_IBVK
1055-1070



PVMSA_HPBVD
11-94





PVGL2_IBVM
1055-1070



PVMSA_HPBVJ
174-191





PVGLB_HSVSA
701-716



PVMSA_HPBVL
174-191





PVGLB_PRVIF
203-218



PVMSA_HPBVN
11-94





PVGLB_VZVD
522-538



PVMSA_HPBVO
174-191





PVGLC_HBVBC
475-490



PVMSA_HPBVP
185-202





PVGLC_HSVE4
444-459



PVMSA_HPBVR
185-202





PVGLC_HSVEB
427-442



PVMSA_HPBVS
11-94





PVGLC_PRVIF
448-461



PVMSA_HPBVW
174-191





PVGLC_VZVD
150-188



PVMSA_HPBVY
174-191





PVGLC_VZVS
150-188



PVMSA_HPBVZ
174-191





PVGLD_HSV11
79-94



PVMT2_IAANN
25-42





PVGLD_HSV2
79-94



PVMT2_IABAN
25-42





PVGLE_PRVRI
 3-94



PVMT2_IAFOW
25-42





PVGLF_BRSVA
205-221
265-280


PVMT2_IAFPR
25-42





PVGLF_BRSVC
205-221
265-280


PVMT2_IAFPW
25-42





PVGLF_BRSVR
205-221
265-280


PVMT2_IALE1
25-42





PVGLF_CDVO
398-414



PVMT2_IALE2
25-42





PVGLF_HRSV1
205-221
265-280


PVMT2_IAMAN
25-42





PVGLF_HRSVA
205-221
265-280


PVMT2_IAPUE
25-42





PVGLF_HRSVL
205-221
265-280


PVMT2_IASIN
25-42





PVGLF_HRSVR
205-221
265-280


PVMT2_IAUDO
25-42





PVGLF_MEASE
286-302



PVMT2_IAWIL
25-42





PVGLF_MEASI
289-305





PVGLF_MEASY
288-302





PVGLF_MUMPM
278-292





PVGLF_MUMPR
278-292





PVGLF_MUMPS
 5-94
276-292





PVGLF_NDVA
273-289





PVGLF_NDVB
273-289





PVGLF_NDVM
273-289





PVGLF_NDVT
273-289





PVGLF_NDVTG
273-289





PVGLF_NDVU
273-289





PVGLF_PHODV
269-285
367-383





PVGLF_RINDK
282-298





PVGLF_RINDL
282-298





PVGLF_TRTV
175-191





PVGLI_VZVD
278-293





PVGLM_HANTB
355-371
900-915





PVGLM_HANTH
499-515





PVGLM_HANTL
499-515





PVGLM_HANTV
499-515





PVGLM_PTPV
743-758





PVGLM_PUUMH
509-525





PVGLM_PUUMS
509-526





PVGLM_SEOUR
355-371
901-916





PVGLM_SEOUS
355-371
900-915





PVGLM_UUK
826-842





PVGLP_BEV
869-885





PVGLY_LASSG
12-94
428-441





PVGLY_LASSJ
12-94
427-442





PVGLY_LYCVA
12-94





PVGLY_LYCVW
12-94





PVGLY_MOPEI
12-94
425-440





PVGLY_PIARV
12-94





PVGNM_CPMV
1021-1037





PVM3_REOVD
521-536





PVMAT_MUMPS
191-207





PVMAT_NDVA
135-161





PVMAT_NDVB
135-161





PVMAT_PI2HT
189-205





PVMAT_SV41
189-205





PVMAT_SV6
 98-114
132-148





PVMP_CAMVC
118-134





PVMP_CAMVD
118-134





PVMP_CAMVE
118-134





PVMP_CAMVN
118-134





PVMP_CAMVS
118-134





PVMP_CAMVW
118-134





PVMP_FMVD
115-131





PVMSA_HPBGS
380-395





PVMSA_HPBV9
187-202





PVMSA_WHV1
378-393





PVMSA_WHV59
383-398





PVMSA_WHV7
383-398





PVMSA_WHV8
383-398





PVMSA_WHV8I
383-398





PVMSA_WHVW8
234-249





PVMT2_IAANN
25-40





PVMT2_IABAN
25-40





PVMT2_IAFOW
25-40





PVMT2_IAFPR
25-40





PVMT2_IAFPW
25-40





PVMT2_IALE1
25-40





PVMT2_IALE2
25-40





PVMT2_IAMAN
25-40





PVMT2_IAPUE
25-40





PVMT2_IASIN
25-40





PVMT2_IAUDO
25-40





PVMT2_IAWIL
25-40





PVMT9_MYXVL
226-241
















TABLE XI







Search Results Summary for P3CTLZIP, P4CTLZIIP, P5CTLZIP, and P6CTLZIP Motifs










P3CTLZIP
P4CTLZIP
P5CTLZIP
P6CTLZIP


LIBRARY FILE
LIBRARY FILE
LIBRARY FILE
LIBRARY FILE






















PENV_BIV27
147-185

PENV1_FRSFV
380-399

PENV1_FRSFV
380-400

PENV_BIV06
47-68
525-546



PENV_CAEVC
810-828

PENV_AVISU
 98-117

PENV2_FRSFV
380-400

PENV_BIV27
47-68
147-168
554-575


PENV_CAEVG
808-828

PENV_BIV27
147-166

PENV_BAEVM
170-190

PENV_FENV1
226-246
830-861


PENV_HV2BE
750-788

PENV_HV12H
123-142

PENV_FIVPE
781-801

PENV_FLVC8
624-645


PENV_HV2D1
741-759

PENV_HV2D2
 9-29

PENV_FIVSD
779-799

PENV_FLVGL
447-468
606-626


PENV_HV2G1
741-759

PENV_HV2SB
778-797

PENV_FIVT2
780-800

PENV_FLVLB
467-488
625-648


PENV_HV2NZ
742-760

PENV_JSRV
541-560

PENV_FLVGL
 9-29

PENV_FLVSA
444-465
602-623


PENV_HV2RO
751-769

PENV_RSVP
533-552

PENV_FOAMV
255-275
924-944
PENV_FOAMV
153-174
957-978


PENV_HV2SB
743-761

PHEMA_VACCC
173-192

PENV_FSVGA
 9-29

PENV_FSVGA
487-488
625-646


PENV_HV2ST
745-763

PHEMA_VACCI
173-192

PENV_HV1C4
428-448

PENV_FSVGB
447-468
605-626


PENV_JSRV
376-394

PHEMA_VACCT
173-192

PENV_HV2CA
750-770

PENV_FSVSM
460-471
808-829


PHEMA_PI2H
118-138

PHEMA_VACCV
173-192

PENV_MLVF5
400-420

PENV_FSVST
467-488


PHEMA_PI2HT
118-138

PVENV_BEV
62-81

PENV_MMTVB
643-663

PENV_GALV
52-73
619-640


PHEMA_SV41
55-73

PVENV_MCV1
61-80

PENV_MMTVG
643-663

PENV_HV2BE
750-771


PVENV_THOGV
473-491

PVENV_MCV2
61-80

PENV_OMVVS
76-95

PENV_HV2G1
741-702


PVG18_BPP22
 83-101

PVFUS_ORFNZ
29-48

PENV_RSVP
42-62

PENV_HV2NZ
742-783


PVG24_BPT4
115-133

PVG01_HSVEB
169-188

PENV_SFV1
924-944

PENV_HV2RO
751-772


PVG36_HSVSA
344-362

PVG01_VACCC
376-395

PENV_SFV3L
921-941

PENV_HV2BT
745-766


PVQ40_HSVI1
14-32

PVG01_VACCV
315-334

PENV_SIVM1
766-788

PENV_MCFF
800-821


PVG50_HSVSA
 5-94

PVG01_VARV
376-395

PENV_SIVMK
765-785

PENV_MCFF3
801-822


PVQ51_BPT4
63-81

PVG06_BPT4
627-646

PENV_SIVML
764-784

PENV_MLVAV
830-851


PVG51_HSVI1
 84-102

PVG10_HSVI1
35-54

PENV_SIVS4
769-789

PENV_MLVCB
625-646


PVG85_HSVI1
155-173

PVG11_HSVI1
103-122
150-189
PENV_SIVSP
773-793

PENV_MLVF6
639-660


PVGF1_IBVB
2788-2806
3374-3392
PVG1_BPPH2
31-50

PHEMA_CDVO
493-513

PENV_MLVFF
639-660


PVGL2_CVH22
1053-1071

PVG1_SPV1R
659-678

PHEMA_CVBLY
391-411

PENV_MLVFP
639-660


PVGL2_IBVB
1056-1074

PVG20_BPT4
231-250

PHEMA_CVBM
391-411

PENV_MLVHO
626-647


PVGL2_IBVB
1055-1073

PVG32_VZVD
 90-109

PHEMA_CVBQ
391-411

PENV_MLVKI
167-188


PVGL2_IBVD2
1056-1074

PVG36_BPK3
132-151

PHEMA_CVHOC
391-411

PENV_MLVMO
629-650


PVGL2_IBVK
1055-1073

PVG37_BPT2
19-38
620-648
PHEMA_CVMA5
402-422

PENV_MLVRD
624-645


PVGL2_IBVM
1055-1073

PVG37_BPT4
19-38
625-644
PHEMA_IACKG
 81-101

PENV_MLVRK
624-645


PVGLB_HSVB1
580-578
689-707
PVG39_HSVI1
1038-1057

PHEMA_IADMA
 81-101

PENV_MSVFB
170-191


PVGLB_HSVBC
692-710

PVG41_HSVI1
62-81

PHEMA_MUMPM
397-417

PENV_RMCFV
603-624


PVGLB_HSVSA
584-602

PVG43_BPPF3
380-399

PHEMA_MUMPR
397-417

PENV_SFV1
957-978


PVGLB_ILTV6
740-758

PVG48_BPPF1
337-356

PHEMA_MUMPS
397-417

PENV_SFV3L
157-178
954-976


PVGLB_ILTVS
760-788

PVG59_HSVI1
142-161

PHEMA_PHODV
493-513

PENV_SIVA1
437-468


PVGLB_ILTVT
760-788

PVG81_HSVI1
117-138

PHEMA_PI1HW
322-342

PENV_SIVAG
442-463


PVGLC_VZVD
431-449

PVG87_HSVI1
318-337
1072-1091
PHEMA_PI2H
13-33

PENV_SIVAI
421-442


PVGLC_VZVS
431-449

PVGF1_IBVB
1587-1606
2108-2127
PHEMA_PI2HT
13-33

PENV_SIVAT
435-468


PVGLF_PI3H4
 2-94

PVGL2_CVBF
 991-1010

PHEMA_RINDL
497-517

PENV_SMSAV
42-63


PVGLH_HSV8G
314-332

PVGL2_CVBL9
 991-1010

PHEMA_SENDS
322-342

PHEMA_CVMA5
402-423


PVGLH_HBVE4
814-832

PVGL2_CVBLY
 991-1010

PHEMA_SENDF
322-342

PHEMA_IADE1
266-287


PVGLH_HSVE8
807-826

PVGL2_CVBM
 991-1010

PHEMA_SENDH
322-342

PHEMA_MUMPM
225-246


PVGLI_HSV11
 5-94

PVGL2_CVBQ
 991-1010

PHEMA_SENDJ
322-342

PHEMA_MUMPR
225-246


PVGNM_BFMV
878-898

PVGL2_CVBV
 991-1010

PHEMA_SENDZ
322-342

PHEMA_MUMPS
225-246


PVM01_VACCC
134-162
177-195
PVGL2_CVH22
788-787
1115-1134
PVENV_LELV
27-47
148-168
PHEMA_PHODV
213-234


PVM01_VACCV
 83-101
126-144
PVGL2_CVM4
 999-1018

PVENV_THOGV
356-376

PHEMA_PI2H
13-34


PVM1_REOVD
227-245

PVGL2_CVMA5
947-986

PVG01_VACCC
288-318

PHEMA_PI2HT
13-34


PVM1_REOVL
227-245

PVGL2_CVMJH
858-877

PVG01_VACCV
237-257

PHEMA_SV5
 7-28
379-400


PVMAT_HRSVA
44-62

PVGL2_CVPFS
64-83
1038-1057
PVG01_VARV
298-318

PHEMA_SV5CM
 7-28
379-400


PVMAT_NDVA
190-208

PVGL2_CVPPU
84-83
1036-1055
PVG06_VACCC
31-51

PHEMA_SV5CP
 7-28
379-400


PVMAT_NDVB
190-208

PVGL2_CVPR8
814-833

PVG08_VARV
31-51

PHEMA_SV5LN
 7-28
379-400


PVMP_CAMVC
183-201

PVGL2_CVPRM
814-833

PVG09_BPPF1
25-45

PVG01_HSVEB
169-190


PVMP_CAMVD
183-201

PVGL2_FIPV
1041-1060

PVG12_HSVI1
151-171

PVG01_HSVI1
589-610


PVMP_CAMVE
183-201

PVGL2_IBV8
588-807
771-780
PVG22_HSVI1
300-320

PVG23_HSVI1
314-335


PVMP_CAMVN
183-201

PVGL2_IBVB
587-606
770-789
PVG39_HSVI1
648-668
970-990
PVG37_BPOX2
65-86


PVMP_CAMVS
183-201

PVGL2_IBVD2
588-607
771-790
PVG51_HSVI1
29-49

PVG43_HSVI1
167-178


PVMP_CAMVW
183-201

PVGL2_IBVK
587-606
770-789
PVG63_HSVI1
336-356

PVG55_HSVI1
288-309


PVMP_FMVD
180-198

PVGL2_IBVM
587-606
770-780
PVG65_HSVI1
117-137

PVG56_HSVSA
 85-108





PVGLB_HCMVA
708-725

PVG74_HSVSA
124-144

PVG58_HSVI1
1165-1178





PVGLB_HCMVT
707-728

PVGL2_IBV6
328-348

PVG58_HSVSA
266-287





PVGLB_HSVSU
117-136

PVGL2_IBVB
327-347

PVG80_HSVI1
30-51





PVGLB_ILTVS
256-275

PVGL2_IBVD2
328-348

PVG83_HSVI1
238-259





PVGLB_ILTVS
266-285

PVGL2_IBVD3
328-348

PVGF1_IBVB
1856-1877





PVGLB_ILTVT
266-285

PVGL2_IBVK
327-347

PVGH3_HCMVA
167-178





PVGLC_HSV11
 3-94
467-486
PVGL2_IBVM
327-347
378-398
PVGL2_CVBF
1259-1280





PVGLC_HSV1K
 3-94
467-486
PVGL2_IBVU2
310-330

PVGL2_CVBL9
1259-1280





PVGLC_HSVBC
475-494

PVGLB_EBV
732-752

PVGL2_CVBLY
1259-1280





PVGLG_CHAV
438-455

PVGLB_HCMVA
750-770

PVGL2_CVBM
1259-1280





PVGLG_RABVH
372-391

PVGLB_HCMVT
751-771

PVGL2_CVBQ
1259-1280





PVGLI_HSVEB
44-63

PVGLB_HSV23
79-99

PVGL2_CVBV
1259-1280





PVGLI_VZVD
278-297

PVGLB_HSV2H
79-99

PVGL2_CVM4
1317-1338





PVGLM_BUNGE
117-138

PVGLB_HSV28
65-85

PVGL2_CVMA5
1265-1288





PVGLM_PHV
152-171

PVGLB_HSV6U
72-92

PVGL2_CVMJH
1176-1197





PVGLM_PTPV
 997-1018

PVGLB_HSVB2
279-299

PVGLB_HSV11
 83-104





PVGLM_PUUMH
155-174

PVGLB_HBVSA
63-83

PVGLB_HSV1F
 82-103





PVGLM_PUUMS
155-174

PVGLB_MCMV8
738-756

PVGLB_HSV1K
 82-103





PVGLM_RVFV
830-849

PVGLF_PI3H4
283-303

PVGLB_HSV1P
 83-104





PVGLM_RVFVZ
830-849

PVGLG_RABVE
454-474

PVGLB_MCMVS
135-156





PVGLM_UUK
665-674

PVGLG_RABVH
454-474

PVGLC_PRVIF
446-467





PVGLY_LYCVW
 89-108

PVGLG_RABVP
454-474

PVGLF_CDVO
336-357





PVGNB_CPMV
1165-1104

PVGLG_RABVE
454-474

PVGLF_MEASE
224-245





PVM3_REOVD
521-540

PVGLG_RABVT
454-474

PVGLF_MEASI
227-248





PVME1_CVBM
171-190

PVGLH_MCMVS
870-890

PVGLF_MEASY
224-245





PVME1_CVH22
138-156

PVGLM_BUNL7
1325-1345

PVGLF_MUMPM
446-467





PVME1_CVPFS
174-193

PVGLM_BUNSH
1325-1345

PVGLF_MUMPR
446-467





PVME1_CVPPU
174-193

PVGLM_BUNYW
 998-1018

PVGLF_MUMPS
446-467





PVME1_CVPRM
174-193

PVGLM_HANTB
 999-1019

PVGLF_PHODV
305-326





PVME1_CVTKE
171-190

PVGLM_HANTH
1000-1020

PVGLF_PI1HC
456-477








PVGLM_HANTL
1001-1021

PVGLF_PI2H
450-471








PVGLM_HANTV
1001-1021

PVGLF_PI2HG
450-471








PVGLM_RVFVZ
1156-1176

PVGLF_PI2HT
450-471








PVGLM_SEOUR
1000-1020

PVGLF_PI3B
405-426
453-474








PVGLM_SEOUS
 999-1019

PVGLF_PI3H4
453-474








PVGLM_UUK
925-945

PVGLF_RINDK
220-241








PVGLY_LYCVA
12-32

PVGLF_RINDL
220-241








PVGLY_LYCVW
12-32

PVGLF_SEND5
460-481








PVGLY_PIARV
12-32

PVGLF_SENDF
460-481








PVGNB_CPMV
141-161

PVGLF_SENDH
460-481








PVMAT_MUMPS
310-330

PVGLF_SENDJ
460-481








PVMAT_NDVA
309-329

PVGLF_SENDZ
460-481








PVMAT_NDVB
309-329

PVGLF_SV41
463-474








PVMAT_PI2HT
308-328

PVGLF_SV5
446-467








PVMAT_PI4HA
312-332

PVGLH_HCMVA
691-712








PVMAT_PI4HB
312-332

PVGLH_HCMVT
690-711








PVMAT_SV41
308-328

PVGLH_HSVE4
304-325








PVMAT_SV5
308-328

PVGLH_HSVEB
297-318








PVME1_IBVS
74-94

PVGLH_HSVSA
658-679








PVME1_IBVB
74-94

PVGLI_HSV2
 2-23








PVME1_IBVB2
74-94

PVGLI_HSV23
 2-23








PVME1_IBVK
74-94

PVGLM_BUNGE
197-218








PVMSA_HPBDB
201-221

PVGLM_BUNL7
190-211








PVMSA_HPBGS
209-229

PVGLM_BUNSH
190-211








PVMSA_HPBHE
293-313

PVGLM_BUNYW
193-214








PVMSA_WHV1
207-227

PVGLY_LASSG
237-258








PVMSA_WHV59
212-232

PVGLY_LASSJ
238-259








PVMSA_WHV7
212-232

PVGPB_EBV
67-88








PVMSA_WHVS
212-232

PVM01_VACCC
281-302








PVMSA_WHVSI
212-232

PVM01_VACCV
230-251








PVMSA_WHVWS
63-83

PVMAT_HRSVA
139-160











PVMAT_RINDK
200-221
239-260











PVMAT_TRTV
122-143











PVME1_CVHOC
64-85











PVMSA_HPBDB
201-222











PVMSA_HPBV0
70-91











PVMSA_HPBV2
244-265











PVMSA_HPBV4
244-265











PVMSA_HPBV9
244-265











PVMSA_HPBVA
233-254











PVMSA_HPBVD
70-91











PVMSA_HPBVI
233-254











PVMSA_HPBVJ
233-254











PVMSA_HPBVL
233-254











PVMSA_HPBVN
70-91











PVMSA_HPBVO
233-254











PVMSA_HPBVP
244-265











PVMSA_HPBVR
244-265











PVMSA_HPBVS
70-91











PVMSA_HPBVW
233-254











PVMSA_HPBVY
233-254











PVMSA_HPBVZ
233-254











PVMT2_IAANN
25-46











PVMT2_IABAN
25-46











PVMT2_IAFOW
25-46











PVMT2_IAFPR
25-46











PVMT2_IAFPW
25-46











PVMT2_IALE1
25-46











PVMT2_IALE2
25-46











PVMT2_IAMAN
25-46











PVMT2_IAPUE
25-46











PVMT2_IABIN
25-46











PVMT2_IAUDO
25-46











PVMT2_IAWIL
25-46
















TABLE XII







Search Results Summary for P7CTLZIP, P8CTLZIP, and P9CTLZIP Motifs









P7CTLZIP
P8CTLZIP
P9CTLZIP


LIBRARY FILE
LIBRARY FILE
LIBRARY FILE


















PENV_BAEVM
202-224

PENV1_FRSFV
380-403

PENV_BLVAF
303-327



PENV_HV1VB1
498-520

PENV2_FRSFV
380-403

PENV_BLVAU
303-327


PENV_HV1BB
493-516

PENV_BIV06
178-201

PENV_BLVAV
303-327


PENV_HV1BN
494-516

PENV_BIV27
207-230

PENV_BLVB2
303-327


PENV_HV1BR
603-626

PENV_FOAMV
864-887

PENV_BLVB6
303-327


PEVN_HV1EL
495-517

PENV_HV123
175-198

PENV_BLVJ
303-327


PENV_HV1H2
498-520

PENV_HV2BE
 3-26
781-804
PENV_FIVPE
781-805


PENV_HV1H3
498-520

PENV_HV2CA
750-773

PENV_FIVSD
779-803


PENV_HV1J3
510-532

PENV_HV2D1
 3-26
772-706
PENV_FIVT2
780-804


PENV_HVIJR
490-512

PENV_HV2G1
772-795

PHEMA_CVBLY
391-415


PENV_HV1KB
504-526

PENV_HV2NZ
777-800

PHEMA_CVBM
391-415


PENV_HV1MA
500-522

PENV_JSRV
541-564

PHEMA_CVBQ
391-415


PENV_HV1MF
496-518

PENV_SFV1
884-887

PHEMA_CVHOC
391-415


PENV_HV1ND
488-510

PENV_SFV3L
881-884

PHEMA_INCCA
442-466


PENV_HV1PV
498-520

PENV_SIVM1
803-826

PHEMA_INCEN
430-454


PENV_HV1S1
489-511

PENV_SIVMK
802-825

PHEMA_INCGL
430-454


PENV_HV1Z2
123-145
495-517
PENV_SIVML
801-824

PHEMA_INCHY
429-463


PENV_HV1Z6
497-518

PENV_SIVS4
806-829

PHEMA_INCJH
443-467


PENV_HV1Z8
606-627

PENV_SIVSP
810-833

PHEMA_INCKY
429-453


PENV_HV1ZH
498-520

PHEMA_CDVO
200-223

PHEMA_INCMI
429-453


PENV_JSRV
378-398

PHEMA_PI2H
65-88

PHEMA_INCNA
429-453


PENV_MPMV
213-235

PHEMA_PI2HT
65-88

PHEMA_INCP1
430-454


PENV_SRV1
213-235

PVF11_VACCC
161-184

PHEMA_INCP2
430-454


PHEMA_IAAIC
37-59

PVF16_VACCC
25-48

PHEMA_INCP3
430-454


PHEMA_IABAN
21-43

PVF16_VACCP
 3-28

PHEMA_INCTA
430-454


PHEMA_IADA3
37-59

PVG1L_AMEPV
313-338

PHEMA_INCYA
430-454


PHEMA_IADH2
21-43

PVG28_HSVI1
491-514

PHEMA_MUMPM
101-126


PHEMA_IADH3
21-43

PVG43_HSVI1
322-345

PHEMA_MUMPR
101-126


PHEMA_IADH4
21-43

PVG52_HSVI1
229-262

PHEMA_MUMPS
101-125


PHEMA_IADH5
21-43

PVG67_HSVI1
722-745

PHEMA_PI1HW
29-53


PHEMA_IADH6
21-43

PVGL2_CVBF
10-33

PVENV_BEV
62-86


PHEMA_IADH7
21-43

PVGL2_CVBL9
851-874

PVF05_VACCC
280-304


PHEMA_IADM2
37-59

PVGL2_CVBLY
10-33

PVF06_VACCP
280-304


PHEMA_IADMA
28-50

PVGL2_CVM4
1267-1290

PVF06_VACCV
281-305


PHEMA_IADU3
37-59

PVGL2_CVMA5
1215-1238

PVF09_VACCC
176-200


PHEMA_IAEN6
21-43

PVGL2_CVMJH
1128-1149

PVF09_VACCV
176-200


PHEMA_IAEN7
37-59

PVGL2_CVPFS
1274-1297

PVG01_VZVD
68-82


PHEMA_IAMAO
37-59

PVGL2_CVPPU
1272-1295

PVG10_HBVSA
355-379


PHEMA_IAME1
37-59

PVGL2_CVPR8
1050-1073

PVG12_HSVSA
68-92


PHEMA_IAME2
37-59

PVGL2_CVPRM
1050-1073

PVG19_HBVI1
 88-112


PHEMA_IAME6
21-43

PVGL2_FIPV
1277-1300

PVG28_HSVI1
173-197


PHEMA_IANT8
37-59

PVGL2_IBVS
196-219

PVG43_HSVI1
109-133


PHEMA_IAQU7
21-43

PVGL2_IBVB
195-218

PVG67_HSVI1
108-132
1005-1029


PHEMA_IATKM
33-55

PVGL2_IBVD2
196-219

PVG72_HSVI1
720-744


PHEMA_IAUDO
37-59

PVGL2_IBVD3
196-219

PVGF1_IBVB
3801-3825


PHEMA_IAVI7
38-60

PVGL2_IBVK
195-218

PVGL8_HSVMD
589-613


PHEMA_IAX31
37-59

PVGL2_IBVM
195-218

PVGLB_ILTV8
597-621


PHEMA_IAZCO
37-59

PVGL2_IBVU1
178-201

PVGLB_ILTVS
607-631


PHEMA_IAZH2
21-43

PVGL2_IBVU2
178-201

PVGLB_ILTVT
607-631


PHEMA_IAZH3
21-43

PVGL2_IBVU3
178-201

PVGLE_HSV11
413-437


PHEMA_IAZUK
37-59

PVGLB_HCMVA
535-558

PVGLE_VZVD
469-493


PHEMA_PHODV
36-58

PVGLB_HCMVT
636-669

PVGLF_SV5
401-425


PHEMA_PI2H
65-87

PVGLB_HSVSA
483-508

PVGLH_HCMVA
574-598


PHEMA_PI2HT
65-87

PVGLB_MCMVS
566-589

PVGLH_HCMVT
573-597


PVFP7_CAPVK
 89-111

PVGLC_HSV1I
487-490

PVGLH_HSV1I
443-487
803-827


PVFUS_VACCS
72-94

PVGLC_HSV1K
487-490

PVGLH_HSV1E
443-487
803-827


PVG01_HSVI1
317-339

PVGLC_HSV2
435-468

PVGLM_BUNL7
31-55


PVG03_VACCC
50-72

PVGLC_HSV23
430-459

PVGLM_BUNSH
31-55


PVG03_VARV
50-72

PVGLM_BUNL7
1387-1410

PVGLM_HANTH
694-718


PVG04_VACCC
11-33

PVGLM_BUNSH
1387-1410

PVGLM_RVFV
344-368


PVG04_VARV
11-33

PVGLM_UUK
988-989

PVGLM_RVFVZ
344-368


PVG19_HSVI1
 88-110

PVGLY_JUNIN
12-35

PVGLM_UUK
661-685


PVG28_HSVI1
173-195

PVGLY_LASSG
12-35

PVGNM_CPMV
311-335


PVG29_HSVI1
20-42

PVGLY_LASSJ
12-35

PVGP2_EBV
657-681


PVG48_HSVI1
134-156

PVGLY_LYCVA
12-35

PVGP3_EBV
854-878


PVG48_HSVSA
71-93

PVGLY_LYCVW
12-35

PVM1_REOVD
280-304


PVG58_HSVSA
266-288

PVGLY_MOPEI
12-35

PVM1_REOVL
280-304


PVG59_HSVI1
287-289

PVGLY_TACV
12-35

PVM21_REOVD
168-192


PVG5_SPV4
42-64

PVGLY_TACV5
12-35

PVM22_REOVD
168-192


PVG60_HSVI1
53-75

PVGLY_TACV7
12-35

PVM2_REOVJ
168-192


PVG65_HSVI1
1347-1389

PVGLY_TACVT
12-35

PVM2_REOVL
168-192


PVG8_SPV1R
60-82

PVGNM_CPMV
741-764

PVMAT_MEASI
 87-111


PVGL2_IBVS
1056-1078

PVM1_REOVD
324-347
454-477
PVMAT_SSPVB
314-338


PVGL2_IBVB
1055-1077

PVM1_REOVL
454-477

PVME1_CVBM
137-161


PVGL2_IBVD2
1056-1078

PVMAT_MUMPS
227-250

PVME1_CVHOC
137-161


PVGL2_IBVK
1055-1077

PVMSA_HPBDB
269-292

PVME1_CVTKE
137-161


PVGL2_IBVM
1055-1077

PVMSA_HPBDC
268-291

PVME1_IBVB
74-98


PVGLB_HSVSU
117-139

PVMSA_HPBDU
231-254

PVME1_IBVB
74-98


PVGLB_HBVB2
745-787

PVMSA_HPBDW
269-292

PVME1_IBVB2
74-98


PVGLC_HSVMB
399-421

PVMSA_HPBHE
236-259

PVME1_IBVK
74-98


PVGLC_HSVMG
398-420




PVMSA_HPBGS
271-295


PVGLC_HSVMM
399-421




PVMSA_WHV1
269-293


PVGLF_BRSVA
285-287
482-504



PVMSA_WHV59
274-298


PVGLF_BRSVC
484-508




PVMSA_WHV7
274-298


PVGLF_BRSVR
484-508




PVMSA_WHV8
274-298


PVGLF_HRSV1
484-508




PVMSA_WHV8I
274-298


PVGLF_HRSVA
484-508




PVMSA_WHVW8
125-149


PVGLF_HRSVL
484-508


PVGLF_HRSVR
484-508


PVGLF_TRTV
452-474


PVGLG_IHNV
77-99


PVGLG_VHSV0
406-428


PVGLH_HSVE4
814-836


PVGLH_HSVEB
807-829


PVGLI_HCMVA
156-180


PVGLM_PTFV
743-765


PVGLP_BEV
430-452
1546-1588


PVGLY_LASSG
426-448


PVGLY_LASSJ
427-449


PVGLY_MOPEI
425-447


PVGP2_EBV
657-679


PVGP3_EBV
854-876


PVM1_REOVD
414-436


PVM1_REOVL
414-436


PVM3_REOVD
304-326


PVMAT_PI1HC
195-217


PVMAT_PI2HT
132-154


PVMAT_SENDF
195-217


PVMAT_SENDH
195-217


PVMAT_SENDZ
195-217


PVMAT_SV41
132-154


PVMEM_EBV
131-153


PVMP_CERV
293-315
















TABLE XIII







SEARCH RESULTS SUMMARY FOR P12LZIPC MOTIF


















PCGENE
P12CTLZIP
All Viruses (No Bacteriophages)
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA
AREA


FILE NAME
PROTEIN
VIRUS
1
2
3
4
5
6
7
8
9





P194K_TRVSY
POTENTIAL 194 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN SYM)
360-378
463-478
600-619
641-668
1011-
1299-
1385-











1030
1325
1409


P3BHS_VACCC
3BETA-HSD
VACCINIA VIRUS (STRAIN COPENHAGEN)
41-56
297-321


P3BHS_VACCV
3BETA-HSD
VACCINIA VIRUS (STRAIN WR)
41-56
297-321


P3BHS_VARV
3BETA-HSD
VARIOLA VIRUS
41-56


PAT3H_FOWPM
ANTITHROMBIN-III HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
47-69


PATI1_VACCV
94 KD A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
387-410


PATI1_VARV
81 KD A-TYPE INCLUSION PROTEIN
VARIOLA VIRUS
388-411


PATI2_HSVI1
UL46
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
279-305


PATI2_HSVIF
UL46
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
279-305


PATI2_HSVEB
ALPHA TRANS-INDUCING FACTOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
197-222



82 KD PROTEIN


PATI2_VACCC
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
215-241


PATI2_VZVD
ALPHA TRANS-INDUCING FACTOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
61-79
377-397



74 KD PROTEIN


PATI3_VACCV
PUTATIVE A-TYPE INCLUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
47-73


PATIN_HSVBP
ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
101-120
277-292


PATIN_HSVE4
ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4
104-123


PATIN_HSVEB
ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
129-148


PATIN_VZVD
ALPHA TRANS-INDUCING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
203-230


PATI_COWPX
A-TYPE INCLUSION PROTEIN
COWPOX VIRUS
389-412
1102-






1128


PB2_BBV
B2 PROTEIN
BLACK BEETLE VIRUS
31-52


PB701_HSV6G
TRANSCRIPTIONAL REGULATORY PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
55-78


PBCRF_EBV
BCRF1 PROTEIN PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 96-123


PBRLI_EBV
TRANSCRIPTION ACTIVATOR BRLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
16-32
200-224


PCAHH_VACCC
CELL SURFACE-BINDING PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
188-203


PCAHH_VACCV
CELL SURFACE-BINDING PROTEIN
VACCINIA VIRUS (STRAIN WR)
188-203


PCAHH_VARV
CELL SURFACE-BINDING PROTEIN
VARIOLA VIRUS
188-203


PCCPH_HSVSA
COMPL CONTROL PROTEIN HOMOLOG PREC
HERPESVIRUS SAIMIRI (STRAIN 11)
326-348


PCELF_HSVI1
CELL FUSION PROTEIN PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
178-196
212-238
286-309


PCELF_HSV1K
CELL FUSION PROTEIN PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
178-196
212-238


PCELF_HSV2H
CELL FUSION PROTEIN PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HGS2)
178-196
212-238
265-309


PCELF_HSVEB
CELL FUSION PROTEIN PRECURSOR
HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
205-223
249-268


PCELF_VZVD
CELL FUSION PROTEIN PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
246-269


PCGH2_HSVSA
CYCLIN HOMOLOG
HERPESVIRUS SAIMIRI (STRAIN 11)
35-61
216-242


PCOA1_BFDV
COAT PROTEIN VP1
BUDGERIGAR FLEDGLING DISEASE VIRUS
 93-110


PCOA1_POVBA
COAT PROTEIN VP1
POLYOMAVIRUS BK (STRAIN AS)
25-52
 97-123
233-251


PCOA1_POVBK
COAT PROTEIN VP1
POLYOMAVIRUS BK
25-52
 97-123
233-251


PCOA1_POVBO
COAT PROTEIN VP1
BOVINE POLYOMAVIRUS
 96-120


PCOA1_POVHA
COAT PROTEIN VP1
HAMSTER POLYOMAVIRUS
16-43


PCOA1_POVIC
COAT PROTEIN VP1
POLYOMAVIRUS JC
17-44
 89-115
225-243


PCOA1_POVLY
COAT PROTEIN VP1
LYMPHOTROPIC POLYOMAVIRUS
 97-123


PCOA1_POVMK
COAT PROTEIN VP1
MOUSE POLYOMAVIRUS (STRAIN KILHAM)
142-160
231-249


PCOA1_SV40
COAT PROTEIN VP1
SIMIAN VIRUS 40
27-44
 99-125
235-253


PCOA1_TTV1
COAT PROTEIN TP1
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
 80-103


PCOA2_POVBO
COAT PROTEIN VP2
BOVINE POLYOMAVIRUS
 77-104


PCOA2_POVLY
COAT PROTEIN VP2
LYMPHOTROPIC POLYOMAVIRUS
 79-102


PCOA2_POVM3
COAT PROTEIN VP2
MOUSE POLYOMAVIRUS (STRAIN 3)
205-226


PCOA3_TTV1
COAT PROTEIN TP3
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
33-55


PCOAT_ABMVW
COAT PROTEIN
ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA)
148-171


PCOAT_BOOLV
COAT PROTEIN PRECURSOR
BOOLARRA VIRUS
383-401


PCOAT_CHVP1
MAJOR CAPSID PROTEIN
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
364-387
392-409


PCOAT_CLVK
COAT PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
165-188


PCOAT_CLVN
COAT PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
165-188


PCOAT_CMVSI
COAT PROTEIN
CYMBIDIUM MOSAIC VIRUS (STRAIN SINGAPORE)
58-76


PCOAT_CNV
COAT PROTEIN
CUCUMBER NECROSIS VIRUS
19-42


PCOAT_CSMV
COAT PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
219-238


PCOAT_CTV36
COAT PROTEIN
CITRUS TRISTEZA VIRUS (ISOLATE T36)
72-94


PCOAT_FCVC6
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN CF1/68 FIV)
564-587
642-664


PCOAT_FCVF4
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
564-587
642-657


PCOAT_FCVF9
COAT PROTEIN
FELINE CALICIVIRUS (STRAIN F9)
567-590
645-660


PCOAT_FPV
COAT PROTEIN VP1
FELINE PANLEUKOPENIA VIRUS
690-705


PCOAT_FPV19
COAT PROTEIN VP1
FELINE PANLEUKOPENIA VIRUS (STRAIN 193)
690-705


PCOAT_HEVS
COAT PROTEIN
HELENIUM VIRUS S
47-66


PCOAT_MEVA
COAT PROTEIN VP1
MINK ENTERITIS VIRUS (STRAIN ABASHIRI)
685-700


PCOAT_MNSV
COAT PROTEIN
MELON NECROTIC SPOT VIRUS
37-53


PCOAT_MSTV
COAT PROTEIN
MAIZE STRIPE VIRUS
176-197
204-227


PCOAT_NMV
COAT PROTEIN
NARCISSUS MOSAIC VIRUS
67-86


PCOAT_NODAV
COAT PROTEIN PRECURSOR
NODAMURA VIRUS
379-394


PCOAT_ORSV
COAT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
104-130


PCOAT_OYMV
COAT PROTEIN
ONONIS YELLOW MOSAIC VIRUS
35-52


PCOAT_PAVC2
COAT PROTEIN VP2
CANINE PARVOVIRUS (TYPE 2/STRAIN A72)
547-562


PCOAT_PAVC7
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN 780929)
685-700


PCOAT_PAVCD
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN CPV-D CORNELL 320)
700-715


PCOAT_PAVCN
COAT PROTEIN VP1
CANINE PARVOVIRUS (STRAIN N)
711-726


PCOAT_PEMV
COAT PROTEIN PRECURSOR
PEPPER MOTTLE VIRUS
273-295


PCOAT_PMV
COAT PROTEIN
PAPAYA MOSAIC POTEXVIRUS
 85-103


PCOAT_PPMVS
COAT PROTEIN
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
64-84
103-129


PCOAT_PVSP
COAT PROTEIN
POTATO VIRUS S (STRAIN PERUVIAN)
129-147


PCOAT_RSV
COAT PROTEIN
RICE STRIPE VIRUS
128-152


PCOAT_SMWLM
COAT PROTEIN
SATELLITE MAIZE WHITE LINE MOSAIC VIRUS
51-67


PCOAT_SMYEA
COAT PROTEIN
STRAWBERRY MILD YELLOW EDGE-ASSOCIATED
57-72




VIRUS


PCOAT_TAMV
GENOME POLYPROTEIN
TAMARILLO MOSAIC VIRUS
222-237


PCOAT_TBSVB
COAT PROTEIN
TOMATO BUSHY STUNT VIRUS (STRAIN BS-3)
359-383


PCOAT_TCV
COAT PROTEIN
TURNIP CRINKLE VIRUS
73-89


PCOAT_TGMV
COAT PROTEIN
TOMATO GOLDEN MOSAIC VIRUS
154-177


PCOAT_TMGMV
COAT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
102-128


PCOAT_TMV
COAT PROTEIN
TOBACCO MOSAIC VIRUS (VULGARE)
102-128


PCOAT_TMV06
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN 06)
102-128


PCOAT_TMVDA
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN DAHLEMENSE)
102-128


PCOAT_TMVER
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN ER)
102-128


PCOAT_TMVHR
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN HOLMES
102-128




RIBGRASS (HR))


PCOAT_TMVO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN O)
102-128


PCOAT_TMVOM
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN OM)
102-128


PCOAT_TMVTO
COAT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
102-128


PCOAT_TNVA
COAT PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN A)
119-142


PCOAT_TNVD
COAT PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN D)
108-134


PCOLL_HSVSC
COLLAGEN-LIKE PROTEIN
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
71-96


PCORA_HPBV2
CORE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW2)
 79-100


PCORA_HPBVA
CORE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ALPHA1)
15-31


PCORA_HPBVZ
CORE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADYW)
 79-100


PDNBI_ADE02
PROBABLE DNA-BINDING PROTEIN
HUMAN ADENOVIRUS TYPE 2
71-93


PDNBI_EBV
MAJOR DNA-BINDING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
649-673


PDNBI_HCMVA
MAJOR DNA-BINDING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
681-708


PDNBI_HSVI1
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
459-476
597-620


PDNBI_HSV1F
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
459-476
597-620


PDNBI_HSV1K
MAJOR DNA-BINDING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
459-476
597-620


PDNBI_HSVB2
MAJOR DNA-BINDING PROTEIN
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
455-472
596-616


PDNBI_HSVEB
MAJOR DNA-BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
810-831


PDNBI_HSVSA
MAJOR DNA-BINDING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
108-127
610-629
869-887
 974-








1000


PDNBI_MCMVS
MAJOR DNA-BINDING PROTEIN
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
657-684


PDNBI_SCMVC
MAJOR DNA-BINDING PROTEIN
SIMIAN CYTOMEGALOVIRUS (STRAIN COLBURN)
188-212
643-670


PDNLI_VARV
DNA LIGASE
VARIOLA VIRUS
269-294


PDPOL_ADE02
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 2
264-283
828-850


PDPOL_ADE05
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 5
264-283
828-850


PDPOL_ADE07
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 7
331-350
494-517
894-916


PDPOL_ADE12
DNA POLYMERASE
HUMAN ADENOVIRUS TYPE 12
262-281
562-583
826-848


PDPOL_CBEPV
DNA POLYMERASE
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
430-454
654-678
732-757


PDPOL_CHVN2
DNA POLYMERASE
CHLORELLA VIRUS NY-2A
424-442


PDPOL_CHVP1
DNA POLYMERASE
PARAMECIUM BURSARIA CHLORELLA VIRUS 1
153-172
424-442


PDPOL_EBV
DNA POLYMERASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
354-374
438-463
524-542
667-687
973-990


PDPOL_FOWPV
DNA POLYMERASE
FOWLPOX VIRUS
60-77
220-247


PDPOL_HCMVA
DNA POLYMERASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
569-587
945-960
1029-







1053


PDPOL_HPBDB
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI
 4-29
157-174
522-541
554-572




DUCK ISOLATE S5)


PDPOL_HPBDC
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
 4-29
157-174
521-540
553-571


PDPOL_HPBDU
DNA POLYMERASE
DUCK HEPATITIS B VIRUS
181-200
213-231


PDPOL_HPBDW
DNA POLYMERASE
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI
 4-29
157-174
522-541
554-572




DUCK ISOLATE S31)


PDPOL_HPBGS
DNA POLYMERASE
GROUND SQUIRREL HEPATITIS VIRUS
448-475


PDPOL_HPBHE
DNA POLYMERASE
HERON HEPATITIS B VIRUS
 4-29
554-572


PDPOL_HPBV2
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW2)
412-439
447-463
761-780


PDPOL_HPBV4
DNA POLYMERASI
HEPATITIS B VIRUS (SUBTYPE ADR4)
410-417


PDPOL_HPBV9
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 991)
412-439
447-463
763-780


PDPOL_HPBVA
DNA POLYMERASE
HEPATITIS B VIRUS (STRAIN ALPHA1)
80-96
399-426
434-450
750-767


PDPOL_HPBVI
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
80-96
410-437
445-468
761-778




INDONESIA/PIDW420)


PDPOL_HPBVJ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
80-96
410-437
445-468
761-778




JAPAN/PJDW233)


PDPOL_HPBVL
DNA POLYMERASE
HEPATITIS B VIRUS (STRAIN LSH/CHIMPANZEE
80-96
399-426
434-457
750-767




ISOLATE)


PDPOL_HPBVM
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADR/MUTANT)
80-96
410-437
760-777


PDPOL_HPBVO
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
80-96
410-437
445-468
761-778




OKINAWA/PODW282)


PDPOL_HPBVP
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
412-439
447-463




PHILIPPINO/PFDW294)


PDPOL_HPBVR
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADR)
80-96
410-437
761-778


PDPOL_HPBVW
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADW)
82-98
405-432
440-456


PDPOL_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
80-96
399-426
434-457
730-767


PDPOL_HPBVZ
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE ADYW)
80-96
399-426
434-457


PDPOL_HSVI1
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
797-817
877-897
1073-







1090


PDPOL_HSV1A
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI)
797-817
877-897
1073-







1090


PDPOL_HSV1K
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
797-817
877-897
1073-







1090


PDPOL_HSV1S
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
797-817
877-897
1073-







1090


PDPOL_HSV2I
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 186)
802-822
882-902
1078-







1095


PDPOL_HSV6U
DNA POLYMERASE
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
652-672
786-803
858-882


PDPOL_HSVEB
DNA POLYMERASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
283-299
377-392
454-477
798-818
878-898


PDPOL_HSVI1
DNA POLYMERASE
ICTALURID HERPESVIRUS 1
257-275
397-418


PDPOL_HSVSA
DNA POLYMERASE
HERPESVIRUS SAIMIRI (STRAIN 11)
118-137
297-319
344-364
514-532
955-972


PDPOL_MCMVS
DNA POLYMERASE
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
303-322
535-553
780-802


PDPOL_NPVAC
DNA POLYMERASE
AUTOGRAPHA CALIFORNICA NUCLEAR
518-536
676-697




POLYHEDROSIS VIRUS


PDPOL_VARV
DNA POLYMERASE
VARIOLA VIRUS
421-437


PDPOL_VZVD
DNA POLYMERASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
312-331
363-382
440-463
713-740
757-781
1006-










1024


PDPOL_WHV1
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 1
446-473


PDPOL_WHV59
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 59
451-478


PDPOL_WHV7
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 7
451-478


POPOL_WHV8
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
450-477
554-571


PDPOL_WHV8I
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS 8
451-478


PDPOL_WHVW6
DNA POLYMERASE
WOODCHUCK HEPATITIS VIRUS W64 (ISOLATE PWS23)
123-150


PDPOM_HPBVY
DNA POLYMERASE
HEPATITIS B VIRUS (SUBTYPE AYW)
399-426
434-450
750-767


PDUT_HCMVA
DUTPASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
107-126


PDUT_HSVE4
DUTPASE
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
130-154


PDUT_HSVEB
DUTPASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
130-149


PDUT_HSVI1
DUTPASE
ICTALURID HERPESVIRUS 1
72-95


PDUT_HSVSA
DUTPASE
HERPESVIRUS SAIMIRI (STRAIN 11)
22-45
 79-104
168-183


PE111_ADEM1
EARLY E1A 11 KD PROTEIN
MOUSE ADENOVIRUS TYPE 1
24-47


PE1A6_ADE07
EARLY E1A 6 3 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
 8-35


PE1A_ADE04
EARLY E1A 28 KD PROTEIN
HUMAN ADENOVIRUS TYPE 4
104-120


PE1A_ADE07
EARLY E1A 28 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
 8-35


PE1A_ADES7
EARLY E1A 28 KD PROTEIN
SIMIAN ADENOVIRUS TYPE 7
173-189
238-254


PE1BL_ADE12
E1B PROTEIN, LARGE T-ANTIGEN
HUMAN ADENOVIRUS TYPE 12
451-467


PE1BL_ADEC2
E1B PROTEIN, LARGE T-ANTIGEN
CANINE ADENOVIRUS TYPE 2
101-122


PE1BL_ADENT
EARLY E1B 44 KD PROTEIN
TUPAIA ADENOVIRUS
 75-101


PE1BS_ADEC2
E1B PROTEIN, SMALL T-ANTIGEN
CANINE ADENOVIRUS TYPE 2
55-77


PE1BS_ADEM1
E1B PROTEIN, SMALL T-ANTIGEN
MOUSE ADENO VIRUS TYPE 1
118-138


PE310_ADE02
EARLY E3B 10 4 KD PROTEIN PRECURSOR
HUMAN ADENOVIRUS TYPE 2
 3-21
34-60


PE310_ADE05
EARLY E3B 10 4 KD PROTEIN PRECURSOR
HUMAN ADENOVIRUS TYPE 5
 3-21
33-60


PE310_ADE07
EARLY E3B 10 4 KD PROTEIN PRECURSOR
HUMAN ADENOVIRUS TYPE 7
 3-24


PE311_ADE02
EARLY E3A 11 6 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 2
27-53


PE311_ADE03
EARLY E3 9 0 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 3
19-45


PE311_ADE05
EARLY E3A 10 5 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 5
20-46


PE311_ADE07
EARLY E3 7 7 KD PROTEIN
HUMAN ADENOVIRUS TYPE 7
36-62


PE314_ADE05
EARLY E3 14 5 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
108-125


PE315_ADE03
EARLY E3B 14 5 KD PROTEIN PRECURSOR
HUMAN ADENOVIRUS TYPE 3
52-72


PE315_ADE07
EARLY E3B 14 9 KD PROTEIN PRECURSOR
HUMAN ADENOVIRUS TYPE 7
52-72


PE316_ADE03
EARLY E3 16 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 3
102-125


PE321_ADE03
EARLY E3 20 5 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 3
146-167


PE321_ADE07
EARLY E3 20 5 KD GLYCOPROTEIN
HUMAN ADENOVIRUS TYPE 7
146-167


PE322_ADEC1
EARLY E3 22 2 KD GLYCOPROTEIN
CANINE ADENOVIRUS TYPE 1 (STRAIN GLAXO)
155-177


PE3GL_ADEM1
EARLY E3 17 7 KD GLYCOPROTEIN
MOUSE ADENOVIRUS TYPE 1
105-127


PE411_ADE02
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
56-77


PE411_ADE05
PROBABLE EARLY E4 11 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
56-77


PE433_ADEM1
PROBABLE EARLY E4 33 KD PROTEIN
MOUSE ADENOVIRUS TYPE 1
61-80


PE434_ADE02
EARLY E4 34 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
 80-106


PEAD_EBV
EARLY ANTIGEN PROTEIN D
EPSTEIN-BARR VIRUS (STRAIN B95-8)
263-286


PEAR_EBV
EARLY ANTIGEN PROTEIN R
EPSTEIN-BARR VIRUS (STRAIN B95-8)
159-184


PEBN2_EBV
EBNA-2 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
126-141


PEBN3_EBV
EBNA-3 NUCLEAR PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
113-131
662-683


PEFT1_VARV
EARLY TRANSCRIPTION FACTOR
VARIOLA VIRUS
21-41



70 KD SUBUNIT


PENV1_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
380-407


PENV2_FRSFV
ENV POLYPROTEIN PRECURSOR
FRIEND SPLEEN FOCUS-FORMING VIRUS
380-407


PENV_AVIR3
ENV POLYPROTEIN
AVIAN RETROVIRUS RPL30
206-225


PENV_AVISU
COAT PROTEIN GP37
AVIAN SARCOMA VIRUS (STRAIN UR2)
 98-117


PENV_BAEVM
ENV POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
170-190
202-224


PENV_BIV06
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106)
47-68
178-201
434-450
525-546


PENV_BIV27
ENV POLYPROTEIN PRECURSOR
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127)
47-68
147-168
207-230
463-479
554-575


PENV_BLVAF
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE FLK)
303-327


PENV_BLVAU
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE)
303-327


PENV_BLVAV
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AMERICAN ISOLATE VDM)
303-327


PENV_BLVB2
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB285)
303-327


PENV_BLVB5
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (BELGIUM ISOLATE LB59)
303-327


PENV_BLVJ
ENV POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1)
303-327


PENV_FENV1
ENV POLYPROTEIN PRECURSOR
FELINE ENDOGENOUS VIRUS ECE1
30-47
225-246
630-651


PENV_FIVPE
ENV POLYPROTEIN PRECURSOR
FELINE ENDOGENOUS VIRUS ECE1
30-47
225-246
630-651


PENV_FLVC6
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA PROVIRUS (CLONE CFE-6)
38-55
624-645


PENV_FLVGL
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN A/GLASGOW-1)
 9-29
447-468
605-626


PENV_FLVLB
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN LAMBDA-B1)
467-488
625-646


PENV_FLVSA
ENV POLYPROTEIN PRECURSOR
FELINE LEUKEMIA VIRUS (STRAIN SARMA)
444-465
602-623


PENV_FOAMV
ENV POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY VIRUS)
153-174
255-275
300-325
481-496
710-727
864-887
924-951
957-978


PENV_FSVGA
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN)
467-488
625-646


PENV_FSVGB
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN GA)
447-468
605-626


PENV_FSVSM
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN SM)
450-471
608-629


PENV_FSVST
ENV POLYPROTEIN PRECURSOR
FELINE SARCOMA VIRUS (STRAIN SNYDER-THEILEN)
467-488


PENV_GALV
ENV POLYPROTEIN PRECURSOR
GIBBON APE LEUKEMIA VIRUS
519-540


PENV_HV1B1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
498-520




(BH10 ISOLATE)


PENV_HV1B8
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
493-515




(BH8 ISOLATE)


PENV_HV1BN
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
494-516




(BRAIN ISOLATE)


PENV_HV1BR
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
503-525




(BRU ISOLATE)


PENV_HV1C4
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
428-448




(CDC-451 ISOLATE)


PENV_HV1EL
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
495-517




(ELI ISOLATE)


PENV_HV1H2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
498-520




(HXB2 ISOLATE)


PENV_HV1H3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
498-520




(HXB3 ISOLATE)


PENV_HV1J3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
510-532




(JH3 ISOLATE)


PENV_HV1JR
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
490-512




(JRCSF ISOLATE)


PENV_HV1KB
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
504-526
552-579
752-768




(STRAIN KB-1-GP32)


PENV_HV1MA
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
500-522




(MAL ISOLATE)


PENV_HV1MF
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
496-518




(MFA ISOLATE)


PENV_HV1N5
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
178-203




(NEW YORK-5 ISOLATE)


PENV_HV1ND
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
488-510




(NDK ISOLATE)


PENV_HV1OY
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
123-140




(OYI ISOLATE)


PENV_HV1PV
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
498-520




(PV22 ISOLATE)


PENV_HV1RH
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
445-460




(RF/HAT ISOLATE)


PENV_HV1S1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
489-511
738-754




(SF162 ISOLATE)


PENV_HV1S3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
300-322




(SF33 ISOLATE)


PENV_HV1Z2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
123-145
410-427
495-517




(Z2/CDC-Z34 ISOLATE)


PENV_HV1Z3
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
117-133
175-198




(ZAIRE 3 ISOLATE)


PENV_HV1Z6
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
497-519




(ZAIRE 6 ISOLATE)


PENV_HV1Z8
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
505-527




(Z-84 ISOLATE)


PENV_HV1ZH
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
123-142
438-453
498-520




(ZAIRE HZ321 ISOLATE)


PENV_HV2BE
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
 3-26
750-775
781-804




(ISOLATE BEN)


PENV_HV2CA
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
750-777




(ISOLATE CMA2)


PENV_HV2D1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
 3-26
741-765
772-795




(ISOLATE D194)


PENV_HV2D2
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
 9-28




(ISOLATE D205, 7)


PENV_HV2G1
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
741-766
772-795




(ISOLATE GHANA-1)


PENV_HV2NZ
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
742-767
777-800




(ISOLATE NIH-Z)


PENV_HV2RO
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
751-776




(ISOLATE ROD)


PENV_HV2SB
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
743-768
778-804




(ISOLATE SBLISY)


PENV_HV2ST
GP160 PRECURSOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
745-770




(ISOLATE ST)


PENV_JSRV
ENV POLYPROTEIN PRECURSOR
SHEEP PULMONARY ADENOMATOSIS VIRUS
104-119
299-325
376-398
541-568


PENV_MCFF
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS
600-621


PENV_MCFF3
ENV POLYPROTEIN PRECURSOR
MINK CELL FOCUS-FORMING MURINE LEUKEMIA VIRUS
601-622




(ISOLATE CI-


PENV_MLVAV
ENV POLYPROTEIN PRECURSOR
AKV MURINE LEUKEMIA VIRUS
630-651


PENV_MLVCB
ENV POLYPROTEIN PRECURSOR
CAS-BR-E- MURINE LEUKEMIA VIRUS
625-646


PENV_MLVF5
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
639-660


PENV_MLVFF
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
639-660


PENV_MLVFP
ENV POLYPROTEIN PRECURSOR
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211)
639-660


PENV_MLVHO
ENV POLYPROTEIN PRECURSOR
HOMULV MURINE LEUKEMIA VIRUS (MUS
626-647




HORTULANUS VIRUS)


PENV_MLVKI
ENV POLYPROTEIN
KIRSTEN MURINE LEUKEMIA VIRUS
167-188


PENV_MLVMO
ENV POLYPROTEIN PRECURSOR
MOLONEY MURINE LEUKEMIA VIRUS
629-650


PENV_MLVRD
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
624-645


PENV_MLVRK
ENV POLYPROTEIN PRECURSOR
RADIATION MURINE LEUKEMIA VIRUS
624-645




(STRAIN KAPLAN)


PENV_MMTVB
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
643-663


PENV_MMTVG
ENV POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
643-663


PENV_MPMV
ENV POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
213-235


PENV_MSVFB
ENV POLYPROTEIN
FBJ MURINE OSTEOSARCOMA VIRUS
170-191


PENV_OMVVS
ENV POLYPROTEIN PRECURSOR
OVINE LENTIVIRUS (STRAIN SA-OMVV)
658-683


PENV_RMCFV
ENV POLYPROTEIN PRECURSOR
RAUSCHER MINK CELL FOCUS-INDUCING VIRUS
603-624


PENV_RSVP
ENV POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
42-69
533-552


PENV_SFV1
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
300-325
710-727
864-887
924-951
957-978


PENV_SFV3L
ENV POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
157-178
304-329
707-724
861-884
921-948
954-975


PENV_SIVA1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
437-458


PENV_SIVAG
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
442-463


PENV_SIVA1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/
421-442




CLONE GRI-1)


PENV_SIVAT
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
435-456


PENV_SIVGB
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
 93-109


PENV_SIVM1
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)
766-793
803-826


PENV_SIVMK
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
139-154
765-792
802-825


PENV_SIVML
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE)
139-154
764-791
801-824


PENV_SIVS4
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS
769-789
806-829




(F236/SMH4 ISOLATE)


PENV_SIVSP
GP160 PRECURSOR
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE)
773-793
810-833


PENV_SMSAV
P15E PROTEIN
SIMIAN SARCOMA VIRUS
42-63


PENV_SRV1
ENV POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
213-235


PERBA_AVIER
ERBA ONCOGENE PROTEIN
AVIAN ERYTHROBLASTOSIS VIRUS (STRAIN ES4)
227-249


PETF1_FOWP1
EARLY TRANSCRIPTION FACTOR
FOWLPOX VIRUS (STRAIN FP-1)
21-41
73-92


PETF1_SFVKA
EARLY TRANSCRIPTION FACTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA)
21-41


PETF1_VACCC
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-41


PETF1_VACCV
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN WR)
21-41


PETF2_VACCC
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
50-73
101-117
165-187
285-308
558-582



82 KD SUBUNIT


PETF2_VACCV
EARLY TRANSCRIPTION FACTOR
VACCINIA VIRUS (STRAIN WR)
48-72



82 KD SUBUNIT


PETF2_VARV
EARLY TRANSCRIPTION FACTOR
VARIOLA VIRUS
50-73
101-117
165-187
285-308
558-582



82 KD SUBUNIT


PEXON_HSV11
ALKALINE EXONUCLEASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
165-180


PEXON_HSV2
ALKALINE EXONUCLEASE
HERPES SIMPLEX VIRUS (TYPE 2)
155-170


PEXON_HSVEB
ALKALINE EXONUCLEASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
276-291


PEXON_PRVN3
ALKALINE EXONUCLEASE
PSEUDORABIES VIRUS (STRAIN NIA-3)
36-51


PEXON_VZVD
ALKALINE EXONUCLEASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
28-44
237-262


PFIB2_ADE40
41 4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 40
116-133


PFIB2_ADE41
41 4 KD FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 41
116-133


PFIBP_ADE03
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 3
152-173


PFIBP_ADE05
FIBER PROTEIN
HUMAN ADENOVIRUS TYPE 5
447-473


PFIBP_ADEB3
FIBER PROTEIN
BOVINE ADENOVIRUS TYPE 3 (MASTADENOVIRUS BOS3)
347-372
775-801


PFIBP_ADEC1
FIBER PROTEIN
CANINE ADENOVIRUS TYPE 1 (STRAIN GLAXO)
382-397


PFIBP_ADEM1
FIBER PROTEIN
MOUSE ADENOVIRUS TYPE 1
191-215
227-252
493-513
548-576
579-599


PGAG_AVEV1
GAG POLYPROTEIN
AVIAN ENDOGENOUS VIRUS EV-1
53-78


PGAG_AVEV2
GAG POLYPROTEIN
AVIAN ENDOGENOUS ROUS-ASSOCIATED VIRUS-0
 2-27


PGAG_AVIMC
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS MC29
53-78


PGAG_AVIMD
GAG POLYPROTEIN
AVIAN MYELOCYTOMATOSIS VIRUS HB1
53-78


PGAG_AVISU
CORE PROTEIN P19
AVIAN SARCOMA VIRUS (STRAIN UR2)
53-78


PGAG_AVISY
GAG POLYPROTEIN
AVIAN SARCOMA VIRUS (STRAIN Y73)
53-78


PGAG_BAEVM
GAG POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
397-422


PGAG_BLVAU
GAG POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE)
212-238


PGAG_BLVJ
GAG POLYPROTEIN
BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1)
213-239


PGAG_CAEVC
GAG POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
102-119




(STRAIN CORK)


PGAG_FUJSV
GAG POLYPROTEIN
FUJINAMI SARCOMA VIRUS
53-78


PGAG_HTL1A
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK)
77-94


PGAG_HTL1C
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
77-94




(CARIBBEAN ISOLATE)


PGAG_HTL1M
GAG POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1
77-94




(ISOLATE MT-2)


PGAG_HV1A2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(ARV2/SF2 ISOLATE)


PGAG_HV1B1
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(BH10 ISOLATE)


PGAG_HV1B5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(BH5 ISOLATE)


PGAG_HV1BR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(BRU ISOLATE)


PGAG_HV1C4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(CDC-451 ISOLATE)


PGAG_HV1EL
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(ELI ISOLATE)


PGAG_HV1H2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(HXB2 ISOLATE)


PGAG_HV1J3
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(JH3 ISOLATE)


PGAG_HV1JR
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(JRCSF ISOLATE)


PGAG_HV1MA
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
262-285




(MAL ISOLATE)


PGAG_HV1MN
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(MN ISOLATE)


PGAG_HV1N5
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(NEW YORK-5 ISOLATE)


PGAG_HV1ND
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91
352-373




(NDK ISOLATE)


PGAG_HV1OY
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(OYI ISOLATE)


PGAG_HV1PV
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(PV22 ISOLATE)


PGAG_HV1RH
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(RF/HAT ISOLATE)


PGAG_HV1U4
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(STRAIN UGANDAN/ISO


PGAG_HV1W2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(WMJ2 ISOLATE)


PGAG_HV1Z2
GAG POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
65-91




(Z2/CDC-Z34 ISOLATE)


PGAG_IPMA
RETROVIRUS-RELATED GAG POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
757-772


PGAG_MMTVB
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
82-97


PGAG_MMTVC
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN C3H)
82-97


PGAG_MMTVG
GAG POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
82-97


PGAG_RSVP
GAG POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
53-78


PGAG_SCVLA
MAJOR COAT PROTEIN
SACCHAROMYCES CEREVISIAE VIRUS L-A
618-645


PGAG_SFV1
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
 85-103


PGAG_SFV3L
GAG POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
 83-101


PGAG_SIVA1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
189-213


PGAG_SIVAG
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
193-217


PGAG_SIVAT
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
189-213


PGAG_SIVCZ
GAG POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ))
66-92


PGAG_SIVGB
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
66-92


PGAG_SIVM1
GAG POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)


PGAG_SMRVH
GAG POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS (SMRV-H)
286-307


PGLRX_VACCC
POSSIBLE GLUTAREDOXIN
VACCINIA VIRUS (STRAIN COPENHAGEN), AND
71-87




(STRAIN L-IVP)


PGLRX_VARV
POSSIBLE GLUTAREDOXIN
VARIOLA VIRUS
71-87


PGRAN_GVAS
GRANULIN
AGROTIS SEGETUM GRANULOSIS VIRUS
208-226


PGRAN_GVTN
GRANULIN
TRICHOPLUSIA NI GRANULOSIS VIRUS
209-227


PGRFA_VACCC
GROWTH FACTOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
104-124


PGRFA_VACCV
GROWTH FACTOR
VACCINIA VIRUS (STRAIN WR)
104-123


PGRFA_VARV
GROWTH FACTOR
VARIOLA VIRUS
104-122


PHELI_EBV
PROBABLE HELICASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
180-207
338-361
438-464


PHELI_HCMVA
PROBABLE HELICASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
397-420
539-560
826-852


PHELI_HSV11
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
389-408
628-646


PHELI_HSV2H
PROBABLE HELICASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
290-309
529-554


PHELI_HSVEB
PROBABLE HELICASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
181-204
243-266
394-413


PHELI_HSVSA
PROBABLE HELICASE
HERPESVIRUS SAIMIRI (STRAIN 11)
327-350
389-411
658-683


PHELI_VZVD
PROBABLE HELICASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
165-189
383-402
561-578
761-786


PHEMA_CDVO
HEMAGGLUTININ-NEURAMINIDASE
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
36-53
200-223


PHEMA_CVBF
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
391-415


PHEMA_CVBLY
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
391-415


PHEMA_CVBM
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
391-415


PHEMA_CVBQ
HEMAGGLUTININ-ESTERASE PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC), AND
391-415




(STRAIN L9)


PHEMA_CVHOC
HEMAGGLUTININ-ESTERASE PRECURSOR
HUMAN CORONAVIRUS (STRAIN OC43)
391-415


PHEMA_CVMA5
HEMAGGLUTININ-ESTERASE PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59)
402-423


PHEMA_CVMS
HEMAGGLUTININ-ESTERASE PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN S)
403-418


PHEMA_IAAIC
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/AICHI/2/68)
37-59
322-339


PHEMA_IABAN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
21-43
306-323


PHEMA_IABUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/
320-337




HOKKAIDO/1/77)


PHEMA_IACKA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
320-337




ALABAMA/1/75)


PHEMA_IACKG
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
 81-101
231-247
316-333




GERMANY/N/49)


PHEMA_IACKP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
302-319




PENNSYLVANIA/1/83)


PHEMA_IACKQ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
302-319




PENNSYLVANIA/1370/83)


PHEMA_IACKS
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/SCOTLAND/59)
319-336


PHEMA_IACKV
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/CHICKEN/VICTORIA/1/85)
230-246
315-332


PHEMA_IADA1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76)
320-337


PHEMA_IADA3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/78/76)
37-59
322-339


PHEMA_IADCZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/
320-337




CZECHOSLOVAKIA/56)


PHEMA_IADE1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
266-287
319-336


PHEMA_IADH1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/5/77)
306-323


PHEMA_IADH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
21-43
306-323


PHEMA_IADH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/33/80)
21-43
306-323


PHEMA_IADH4
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/7/82)
21-43
306-323


PHEMA_IADH5
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/21/82)
21-43
215-237


PHEMA_IADH6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/9/85)
21-43
306-323


PHEMA_IADH7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/10/85)
21-43
306-323


PHEMA_IADM2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74)
37-59
322-339


PHEMA_IADMA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53)
28-50
 81-101


PHEMA_IADNZ
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/
320-337




NEW ZEALAND/31/76)


PHEMA_IADU3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
37-59
322-339


PHEMA_IAEN6
HEMAGGLUTININ
INFLUENZA A VIRUS (STRAIN A/ENGLAND/878/69)
21-43
306-323


PHEMA_IAEN7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/ENGLAND/321/77)
37-59
322-339


PHEMA_IAFPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
230-246
315-332




ROSTOCK/34)


PHEMA_IAGRE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GREY TEAL/
320-337




AUSTRALIA/2/79)


PHEMA_IAGU2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GULL/
320-337




MARYLAND/704/77)


PHEMA_IAGUA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/GULL/
319-336




ASTRAKHAN/227/84)


PHEMA_IAHAL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/ALGIERS/72)
321-338


PHEMA_IAHC6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
230-246
315-332




CAMBRIDGE/1/63)


PHEMA_IAHC7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
230-246
315-332




CAMBRIDGE/1/73)


PHEMA_IAHCD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/C DETROIT/1/64)
230-246
315-332


PHEMA_IAHDE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/DETROIT/1/64)
230-246
315-332


PHEMA_IAHFO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
236-252
321-338




FONTAINEBLEAU/76)


PHEMA_IAHK6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/2/86)
321-338


PHEMA_IAHK7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/87)
236-252
321-338


PHEMA_IAHLE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
230-246
315-332




LEXINGTON/1/66)


PHEMA_IAHLO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
230-246
315-332




LONDON/1416/73)


PHEMA_IAHMI
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63)
236-252
321-338


PHEMA_IAHNM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
236-252
321-338




NEW MARKET/76)


PHEMA_IAHNN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
315-332




NEW MARKET/1/77)


PHEMA_IAHPR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
315-332


PHEMA_IAHRO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/ROMANIA/80)
236-252
321-338


PHEMA_IAHSA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SANTIAGO/1/85)
236-252
321-338


PHEMA_IAHSP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/SAO PAULO/1/76)
230-246
315-332


PHEMA_IAHSW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/
230-246
315-332




SWITZERLAND/137/72)


PHEMA_IAHTE
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
236-252
321-338


PHEMA_IAHTO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/TOKYO/71)
236-252
321-338


PHEMA_IAHUR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/EQUINE/URUGUA/1/63)
236-252
321-338


PHEMA_IAJAP
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/JAPAN/305/57)
317-334


PHEMA_IAMAA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/
197-223
319-336




ASTRAKHAN/244/82)


PHEMA_IAMAB
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/
202-228
324-341




ASTRAKHAN/263/82)


PHEMA_IAMAO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MALLARD/
37-59
322-339




NEW YORK/6874/78)


PHEMA_IAME1
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/1/71)
37-59
322-339


PHEMA_IAME2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/102/72)
37-59
322-339


PHEMA_IAME6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/6/86)
21-43
306-323


PHEMA_IAMIN
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
 85-101
231-247
316-333


PHEMA_IANT6
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
37-59
322-339


PHEMA_IAPIL
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/PILOT WHALE/
320-337




MAINE/328/84)


PHEMA_IAQU7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/QU/7/70)
21-43
306-323


PHEMA_IARUD
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/
320-337




NEW JERSEY/47/


PHEMA_IASE2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SEAL/
320-337




MASSACHUSETTS/133/82)


PHEMA_IASH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SHEARWATER/
234-250
321-338




AUSTRALIA/72)


PHEMA_IASTA
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/STARLING/
230-246
315-332




VICTORIA/5156/85)


PHEMA_IATKM
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
33-55
320-337




MINNESOTA/833/80)


PHEMA_IATKO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
233-249




ONTARIO/7732/66)


PHEMA_IATKR
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
230-246


PHEMA_IATKW
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/TURKEY/
229-245




WISCONSIN/1/66)


PHEMA_IAUDO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
37-59
322-339
380-397


PHEMA_IAVI7
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
38-60
323-340


PHEMA_IAX31
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN X-31)
37-59


PHEMA_IAZCO
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/COLORADO/1/77)
37-59
322-339


PHEMA_IAZH2
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/
21-43
306-323




HONG KONG/81/78)


PHEMA_IAZH3
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/
21-43
306-323




HONG KONG/126/82)


PHEMA_IAZUK
HEMAGGLUTININ PRECURSOR
INFLUENZA A VIRUS (STRAIN A/SWINE/UKKEL/1/84)
37-59
322-339


PHEMA_INBAA
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/86)
115-131
295-310


PHEMA_INBBE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
123-139
303-318


PHEMA_INBBO
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/BONN/43)
116-132
293-308


PHEMA_INBEN
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/ENGLAND/222/82)
123-139
301-316


PHEMA_INBFU
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN B/FUKUOKA/80/81)
108-124
286-301


PHEMA_INBGL
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/GL/54)
119-135
296-311


PHEMA_INBHK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
116-132
293-308


PHEMA_INBIB
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN B/BARAKI/2/85)
108-124
288-303


PHEMA_INBID
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/ID/86)
120-136
299-314


PHEMA_INBLE
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/LEE/40)
123-139
302-317


PHEMA_INBMD
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
113-129
292-307


PHEMA_INBME
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/6/86)
116-132
296-311


PHEMA_INBNA
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN B/NAGASAKI/1/87)
108-124
288-303


PHEMA_INBOR
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
123-139
301-316


PHEMA_INBSI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
123-139
301-316


PHEMA_INBSJ
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/64)
119-135
298-313


PHEMA_INBUS
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/USSR/100/83)
116-132
294-309


PHEMA_INBVI
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85)
116-132
296-311


PHEMA_INBVK
HEMAGGLUTININ PRECURSOR
INFLUENZA B VIRUS (STRAIN B/VICTORIA/2/87)
123-139
303-318


PHEMA_INBYB
HEMAGGLUTININ
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/16/88)
108-124
286-301


PHEMA_INCCA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
442-466


PHEMA_INCEN
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/ENGLAND/892/83)
430-454


PHEMA_INCGL
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54)
430-454


PHEMA_INCHY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN C/HYOGO/1/83)
429-453


PHEMA_INCJH
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66)
443-467


PHEMA_INCKY
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN C/KYOTO/41/82)
429-453


PHEMA_INCMI
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80)
429-453


PHEMA_INCNA
HEMAGGLUTININ
INFLUENZA C VIRUS (STRAIN C/NARA/82)
429-453


PHEMA_INCP1
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/10/81)
430-454


PHEMA_INCP2
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/115/81)
430-454


PHEMA_INCP3
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/PIG/BEIJING/439/82)
430-454


PHEMA_INCTA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/TAYLOR/1233/47)
430-454


PHEMA_INCYA
HEMAGGLUTININ PRECURSOR
INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81)
430-454


PHEMA_MUMP1
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL-1)
101-125
133-148
225-246
367-394
397-417


PHEMA_MUMPM
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
101-125
133-148
225-246
367-394
397-417


PHEMA_MUMPR
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN RW)
101-125
133-148
225-246
367-394
397-417


PHEMA_MUMPS
HEMAGGLUTININ-NEURAMINIDASE
MUMPS VIRUS (STRAIN SBL)
101-125
133-148


PHEMA_NDVA
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN
 93-110




AUSTRALIA-VICTORIA/32)


PHEMA_NDVB
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
 93-110


PHEMA_NDVD
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN D26/76)
 93-110


PHEMA_NDVH4
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47)
 93-110


PHEMA_NDVI
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45)
 93-110


PHEMA_NDVM
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)
 93-110


PHEMA_NDVQ
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)
 93-110


PHEMA_NDVTG
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G B/48)
 93-110


PHEMA_NDVU
HEMAGGLUTININ-NEURAMINIDASE
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
 93-110


PHEMA_PHODV
HEMAGGLUTININ-NEURAMINIDASE
PHOCINE DISTEMPER VIRUS
36-58
213-234
493-513


PHEMA_PI1HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
29-53
322-342
345-360
486-503




WASHINGTON/1957)


PHEMA_PI2H
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS (PIV-2)
13-40
65-88
118-136


PHEMA_PI2HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
13-40
65-88
118-136


PHEMA_PI3B
HEMAGGLUTININ-NEURAMINIDASE
BOVINE PARAINFLUENZA 3 VIRIS
111-128
272-299
324-340


PHEMA_PI3H4
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
111-128
272-299
324-340


PHEMA_PI3HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN
111-128
272-299
324-340




AUS/124854/74)


PHEMA_PI3HT
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/545/80)
111-128
272-299
324-340


PHEMA PI3HU
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/9305/82)
111-128
272-299
324-340


PHEMA_PI3HV
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN TEX/12677/83)
111-128
272-299
324-340


PHEMA_PI3HW
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/641/79)
111-128
272-299
324-340


PHEMA_PI3HX
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN WASH/
111-128
272-299
324-340




1511/73)


PHEMA_PI4HA
HEMAGGLUTININ-NEURAMINIDASE
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
50-67


PHEMA_RINDK
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN KABETE O)
368-383


PHEMA_RINDL
HEMAGGLUTININ-NEURAMINIDASE
RINDERPEST VIRUS (STRAIN L)
 4-30


PHEMA_SEND5
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
322-342


PHEMA_SENDF
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN FUSHIMI)
322-342


PHEMA_SENDH
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HARRIS)
322-342


PHEMA_SENDJ
HEMAGGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN HVJ)
322-342


PHEMA_SENDZ
HEMAOGLUTININ-NEURAMINIDASE
SENDAI VIRUS (STRAIN Z)
322-342


PHEMA_SV41
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 41
55-73
 85-102
107-132


PHEMA_SV5
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (STRAIN W3)
 7-28
 84-101
379-400


PHEMA_SV5CM
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (ISOLATE CANINE/CPI−)
 7-28
 84-101
379-400


PHEMA_SV5CP
HEMAGGLUTININ-NEURAMINIDASE
SIMIAN VIRUS 5 (ISOLATE CANINE/CPI+)
 7-28
 84-101
379-400


PHEMA_SV5LN
HEMAGGLUTININ-NEURAMINIDASE

 7-28
 84-101
379-400


PHEMA_VACCC
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
173-192


PHEMA_VACCI
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN IHD-J)
173-192


PHEMA_VACCT
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN TIAN TAN)
173-192


PHEMA_VACCV
HEMAGGLUTININ PRECURSOR
VACCINIA VIRUS (STRAIN WR)
173-192


PHEMA_VARV
HEMAGGLUTININ PRECURSOR
VARIOLA VIRUS
175-194


PHEX8_ADE02
HEXON-ASSOCIATED PROTEIN PRECUSOR
HUMAN ADENOVIRUS TYPE 2
38-61
119-140


PHEX8_ADE03
HEXON-ASSOCIATED PROTEIN PRECUSOR
HUMAN ADENOVIRUS TYPE 3
27-48


PHEX8_ADE05
HEXON-ASSOCIATED PROTEIN PRECUSOR
HUMAN ADENOVIRUS TYPE 5
38-61
119-140


PHEX8_ADE41
HEXON-ASSOCIATED PROTEIN PRECUSOR
HUMAN ADENOVIRUS TYPE 41
38-61
128-146


PHEX8_ADEM1
HEXON-ASSOCIATED PROTEIN PRECUSOR
MOUSE ADENOVIRUS TYPE 1
36-52


PHEX9_ADE07
HEXON-ASSOCIATED PROTEIN
HUMAN ADENOVIRUS TYPE 7, AND 3
 92-117


PHEX9_ADEC2
HEXON-ASSOCIATED PROTEIN
CANINE ADENOVIRUS TYPE 2
52-77


PHEX9_ADENT
HEXON-ASSOCIATED PROTEIN
TUPAIA ADENOVIRUS
60-82


PHRG_COWPX
HOST RANGE PROTEIN
COWPOX VIRUS
517-533
558-583
609-636


PI177_ASFB7
LATE PROTEIN I177L
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
68-83


PI196_ASFB7
LATE PROTEIN I196L
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
169-190


PI226_ASFB7
LATE PROTEIN I226R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
60-77


PI329_ASFB7
LATE PROTEIN I329L PRECURSOR
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
239-260


PI78_ASFB7
EARLY PROTEIN I78R
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
 2-29


PIBMP_SOCMV
INCLUSION BODY MATRIX PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
 97-119


PIC18_EBV
PROBABLE PROCESSING AND TRANSPORT
EPSTEIN-BARR VIRUS (STRAIN B95-8)
101-123
131-153
759-777



PROTEIN


PIC18_HCMVA
PROBABLE PROCESSING AND TRANSPORT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
156-176
202-222



PROTEIN


PIC18_HSVI1
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 8-29
45-61
122-143
751-768


PIC18_HSV1A
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN ANGELOTTI)
 8-29
45-61
122-143
751-768


PIC18_HSV1F
PROCESSING AND TRANSPORT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
 8-29
122-143
746-763


PIC18_HSVB2
PROBABLE PROCESSING AND TRANSPORT
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
12-37
130-151



PROTEIN


PIC18_HSVEB
PROBABLE PROCESSING AND TRANSPORT
EQUINE HERPESVIRUS TYPE 1
37-56
129-144
732-755



PROTEIN


PIC18_HSVSA
PROBABLE PROCESSING AND TRANSPORT
HERPESVIRUS SAIMIRI (STRAIN 11)
27-49
51-78
647-672



PROTEIN


PIC18_MCMVS
PROBABLE PROCESSING AND TRANSPORT
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
126-144
202-229
386-411



PROTEIN


PIC18_PRVIF
PROBABLE PROCESSING AND TRANSPORT
PSEUDORABIES VIRUS (STRAIN
285-307
698-718



PROTEIN
INDIANA-FUNKHAUSER/BECKER)


PIC18_VZVD
PROBABLE PROCESSING AND TRANSPORT
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
69-88
619-639
725-744



PROTEIN


PICP0_HSVI1
IMMEDIATE-EARLY PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
668-684


PICP0_HSV2H
VMW118 PROTEIN
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
713-729


PICP0_PRVIF
EARLY PROTEIN 0
PSEUDORABIES VIRUS (STRAIN
 82-102




INDIANA-FUNKHAUSER/BECKER)


PICP3_HSV1F
INFECTED CELL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
211-227


PICP4_HSVI1
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
81-98
621-637


PICP4_HSVEB
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
708-725
736-759


PICP4_HSVEK
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
708-725
736-759


PICP4_HSVMG
TRANS-ACTING TRANSACTIVATOR PROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN GA)
488-506
585-611
1202-







1218


PICP4_VZVD
TRANS-ACTING TRANSCRIPTIONAL PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
547-563


PIE18_PRVIF
IMMEDIATE-EARLY PROTEIN IE180
PSEUDORABIES VIRUS (STRAIN
731-748




INDIANA-FUNKHAUSER/BECKER)


PIE18_PRVKA
IMMEDIATE-EARLY PROTEIN IE180
PSEUDORABIES VIRUS (STRAIN KAPLAN)
720-737


PIE63_HCMVA
TRANSCRIPTIONAL REGULATOR IE63
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
286-304
364-383



HOMOLOG (


PIE63_HSVI1
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
378-394


PIE63_HSV2H
TRANSCRIPTIONAL REGULATOR IE63
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
378-394


PIE63_HSVEB
TRANSCRIPTIONAL REGULATOR IE63
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
337-353
385-406



HOMOLOG


PIE63_HSVSA
52 KD IMMEDIATE-EARLY
HERPESVIRUS SAIMIRI (STRAIN 11)
301-326



PHOSPHOPROTEIN


PIE68_HSVI1
IMMEDIATE-EARLY PROTEIN IE68
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
189-205


PIE68_HSVE4
IMMEDIATE-EARLY PROTEIN IE68
EQUINE HERPESVIRUS TYPE 4
 81-104


PIE68_HSVEB
IMMEDIATE-EARLY PROTEIN
EQUINE HERPESVIRUS TYPE 1
 93-116


PIE68_PRVKA
IMMEDIATE-EARLY PROTEIN
PSEUDORABIES VIRUS (STRAIN KAPLAN)
 85-108


PIE68_VZVD
GENE 63/70 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
57-78


PIR14_HCMVA
HYPOTHETICAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
117-137


PKERB_AVIER
ERBB TYROSINE KINASE TRANSFORMING
AVAIN ERYTHROBLASTOSIS VIRUS
64-84
297-324



PROTEIN


PKFES_FSVGA
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS (STRAIN GARDNER-ARNSTEIN)
73-88



TRANSFORMING PROT


PKFES_FSVST
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS (STRAIN SNYDER-THEILEN)
 2-22



TRANSFORMING PROT


PKFGR_FSVGR
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS (STRAIN GARDNER-RASHEED)
269-288



TRANSFORMING PROT


PKFMS_FSVMD
FMS TYROSINE KINASE
FELINE SARCOMA VIRUS (STRAIN MCDONOUGH)
141-159
243-263
434-450
548-563
781-801
856-877



TRANSFORMING PROTEIN


PKFPS_AVISP
TYROSINE-PROTEIN KINASE
FELINE SARCOMA VIRUS (STRAIN PRC1I)
247-274



TRANSFORMING PROT


PKFPS_FUJSV
TYROSINE-PROTEIN KINASE
FUJINAMI SARCOMA VIRUS
259-275
346-370
400-420
587-614



TRANSFORMING PROT


PKITH_ASFB7
THYMIDINE KINASE
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
18-41


PKITH_EBV
THYMIDINE KINASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
403-418
428-446


PKITH_FLDV
THYMIDINE KINASE
FISH LYMPHOCYSTIS DISEASE VIRUS
 96-117
252-275


PKITH_HSVI1
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
223-249


PKITH_HSV1C
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN CL101)
223-249


PKITH_HSV1E
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
223-249


PKITH_HSV1K
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
223-249


PKITH_HSV1S
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN SC16)
223-249


PKITH_HSV23
THYMIDINE KINASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
224-250
333-348


PKITH_HSVB6
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 1 (STRAIN 6660)
193-219
280-304


PKITH_HSVBH
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 2 (STRAIN BHM-1)
180-202


PKITH_HSVBM
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 3 (STRAIN WC11)
381-399
609-633


PKITH_HSVBQ
THYMIDINE KINASE
BOVINE HERPESVIRUS TYPE 1 2 (STRAIN Q3932)
194-220
282-306


PKITH_HSVE4
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
174-193
261-284


PKITH_HSVEB
THYMIDINE KINASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND
18-33
174-193
274-298




(ISOLATE HVS25A)


PKITH_HSVF
THYMIDINE KINASE
FELINE HERPESVIRUS (FELID HERPES VIRUS 1)
171-189


PKITH_HSVI1
THYMIDINE KINASE
ICTALURID HERPESVIRUS 1
14-32


PKITH_HSVMR
THYMIDINE KINASE
MARMOSET HERPESVIRUS
189-215


PKITH_HSVSA
THYMIDINE KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
208-232


PKITH_ILTVT
THYMIDINE KINASE
INFECTIOUS LARYNGOTRACHEITIS VIRUS
183-202
208-234




(STRAIN THORNE V882)


PKITH_VZV4
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (ACYCLOVIR-
197-216




RESISTANT STRAIN 40A2)


PKITH_VZV7
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (ACYCLOVIR-
197-216




RESISTANT STRAIN 7-1-3)


PKITH_VZVD
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
197-216


PKITH_VZVG
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (ACYCLOVIR-
197-216




RESISTANT STRAIN GK)


PKITH_VZVW
THYMIDINE KINASE
VARICELLA-ZOSTER VIRUS (VZV)
197-216


PKKIT_FSVHZ
KIT TYROSINE KINASE TRANSFORMING
FELINE SARCOMA VIRUS (STRAIN
192-214
276-297



PROTEIN
HARDY-ZUCKERMAN 4)


PKR15_HSVI1
GENE 15 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
151-167
358-374


PKR16_HSVI1
GENE 16 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
197-217
286-311


PKR1_HSVI1
SERINE/THREONINE-PROTEIN KINASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
280-296
338-377


PKR1_HSV2
SERINE/THREONINE-PROTEIN KINASE
HERPES SIMPLEX VIRUS (TYPE 2)
276-296
358-377


PKR1_HSVEB
SERINE/THREONINE-PROTEIN KINASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
289-307


PKR1_HSVEK
SERINE/THREONINE-PROTEIN KINASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
289-307


PKR1_VZVD
SERINE/THREONINE-PROTEIN KINASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
179-197


PKR2_EBV
PROBABLE SERINE/THREONINE-PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
196-211
313-338



KINASE


PKR2_HSV11
PROBABLE SERINE/THREONINE-PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
247-267



KINASE


PKR2_HSVEB
PROBABLE SERINE/THREONINE-PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
317-339
441-462



KINASE


PKR2_PRVN3
SERINE/THREONINE-PROTEIN KINASE 2
PSEUDORABIES VIRUS (STRAIN NIA-3)
164-185
282-305


PKR2_VZVD
PROBABLE SERINE/THREONINE-
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
116-131
226-247
354-373



PROTEIN KINASE


PKR73_HSVI1
GENE 73 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
841-858


PKR74_HSVI1
GENE 74 PROTEIN KINASE
ICTALURID HERPESVIRUS 1
359-380
548-575


PKRB1_VACCC
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN COPENHAGEN)
199-214


PKRB1_VACCV
30 KD PROTEIN KINASE HOMOLOG
VACCINIA VIRUS (STRAIN WR)
199-214


PKRB1_VARV
30 KD PROTEIN KINASE HOMOLOG
VARIOLA VIRUS
199-214


PKRF1_SFVKA
POSSIBLE PROTEIN KINASE C20
SHOPE FIBROMA VIRUS (STRAIN KASZA)
83-98


PKRF1_VACCC
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN COPENHAGEN)
 85-100


PKRF1_VACCP
POSSIBLE PROTEIN KINASE F10
VACCINIA VIRUS (STRAIN L-IVP)
52-67


PKRF1_VARV
POSSIBLE PROTEIN KINASE F10
VARIOLA VIRUS
 85-100


PKROS_AVISU
ROS TYR KINASE TRANSFORMING PROTEIN
AVIAN SARCOMA VIRUS (STRAIN UR2)
 6-29
202-223
284-305


PKRYK_AVIR3
TYR-PROTEIN KINASE TRANSFORMING
AVIAN RETROVIRUS RPL30
154-172
221-241



PROTEIN R


PKSEA_AVIET
TYR-PROTEIN KINASE TRANSFORMING
AVIAN ERYTHROBLASTOSIS VIRUS (STRAIN S13)
158-177



PROTEIN SE


PKSRC_AVIS2
TYR-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN PR2257)
361-377



PROTEIN SR


PKSRC_AVISR
TYR-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN RASV1441)
361-377



PROTEIN SR


PKSRC_AVISS
TYR-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN S1)
361-377



PROTEIN SR


PKSRC_AVIST
TYR-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN S2)
361-377



PROTEIN SR


PKSRC_RSVHI
TYR-PROTEIN KINASE TRANSFORMING
ROUS SARCOMA VIRUS (STRAIN H-19)
361-377



PROTEIN SR


PKSRC_RSVP
TYR-PROTEIN KINASE TRANSFORMING
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
361-377



PROTEIN SR


PKSRC_RSVPA
TYR-PROTEIN KINASE TRANSFORMING
ROUS SARCOMA VIRUS (STRAIN PA101T)
358-374



PROTEIN SR


PKSRC_RSVSR
TYR-PROTEIN KINASE TRANSFORMING
ROUS SARCOMA VIRUS (STRAIN SCHMIDT-RUPPIN)
361-377



PROTEIN SR


PKYES_AVISY
TYR-PROTEIN KINASE TRANSFORMING
AVIAN SARCOMA VIRUS (STRAIN Y73
361-377



PROTEIN Y


PL100_ADE02
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
489-511


PL100_ADE0S
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
489-511


PL100_ADE41
LATE 100 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
458-480


PL52_ADE02
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 2
237-259


PL52_ADE05
LATE L1 52 KD PROTEIN
HUMAN ADENOVIRUS TYPE 5
237-259


PLEC1_FOWPM
HEPATIC LECTIN HOMOLOG
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
 2-26


PLMP1_EBV
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
20-43
 79-100


PLMP1_EBVC
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
20-43
 79-100


PLMP1_EBVR
LATENT MEMBRANE PROTEIN 1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
20-43
 79-100


PLMP2_EBV
GENE TERMINAL PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
181-196
204-226
267-288
291-315
346-369
390-410


PMCEL_SFVKA
MRNA CAPPING ENZYME, LARGE SUBUNIT
SHOPE FIBROMA VIRUS (STRAIN KASZA)
244-260
556-578
679-699


PMCEL_VACCC
MRNA CAPPING ENZYME, LARGE SUBUNIT
VACCINIA VIRUS (STRAIN COPENHAGEN)
 81-102
265-282
289-312
677-707


PMCEL_VACCV
MRNA CAPPING ENZYME, LARGE SUBUNIT
VACCINIA VIRUS (STRAIN WR)
 81-102
265-282
289-312
687-707


PMCEL_VARV
MRNA CAPPING ENZYME, LARGE SUBUNIT
VARIOLA VIRUS
 81-102
265-282
289-312
687-707


PMCE_ASFB7
MRNA CAPPING ENZYME
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
217-243


PMCE_REOVD
MRNA CAPPING ENZYME
REOVIRUS (TYPE 3/STRAIN DEARING)
358-384
567-588
714-741


PMOVP_CGMVS
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
157-172




(WATERMELON STRAIN S


PMOVP_CGMVW
MOVEMENT PROTEIN
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
157-172




(WATERMELON STRAIN


PMOVP_ORSV
MOVEMENT PROTEIN
ODONTOGLOSSUM RINGSPOT VIRUS
49-74
178-205


PMOVP_PPMVS
MOVEMENT PROTEIN
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
25-50
186-201


PMOVP_TMGMV
MOVEMENT PROTEIN
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
186-201


PMOVP_TMVCO
MOVEMENT PROTEIN
TOBACCO MOSAIC VIRUS (STRAIN COWPEA)
 88-107
156-171


PMTC1_CHVN1
MODIFICATION METHYLASE CVIBI
CHLORELLA VIRUS NC-1A
129-156


PMTC2_CHVP1
MODIFICATION METHYLASE CVIAII
PARAMECIUM BURSARIA CHLORELLA VIRUS 1 (
72-94


PMTC3_CHVN1
MODIFICATION METHYLASE CVIBIII
CHLORELLA VIRUS NC-1A
177-192
265-286


PMYBE_AVILE
P135-GAG-MYB-ETS TRANSFORMING
AVIAN LEUKEMIA VIRUS E26
104-124



PROTEIN (


PMYB_AVIMB
MYB TRANSFORMING PROTEIN
AVIAN MYELOBLASTOSIS VIRUS
218-238
301-326


PNCAP_AINOV
NUCLEOCAPSID PROTEIN
AINO VIRUS
159-181


PNCAP_BUNLC
NUCLEOCAPSID PROTEIN
BUNYAVIRUS LA CROSSE
84-99


PNCAP_BUNSH
NUCLEOCAPSID PROTEIN
BUNYAVIRUS SNOWSHOE HARE
84-99


PNCAP_CDVO
NUCLEOCAPSID PROTEIN
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
31-50


PNCAP_FIPV
NUCLEOCAPSID PROTEIN
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
57-74


PNCAP_HANTV
NUCLEOCAPSID PROTEIN
HANTAAN VIRUS (STRAIN 76-118)
317-342


PNCAP_HAZVJ
NUCLEOCAPSID PROTEIN
HAZARA VIRUS (ISOLATE JC280)
428-446


PNCAP_IHNV
NUCLEOCAPSID PROTEIN
INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS
110-137
239-265




(STRAIN ROUND BUT


PNCAP_INSV
NUCLEOCAPSID PROTEIN
IMPATIENS NECROTIC SPOT VIRUS
155-179


PNCAP_MEASE
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN EDMONSTON)
40-59


PNCAP_MEASH
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN HALLE)
40-59


PNCAP_MEASY
NUCLEOCAPSID PROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
40-59


PNCAP_MUMP1
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
156-178


PNCAP_MUMPM
NUCLEOCAPSID PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
156-178


PNCAP_PHV
NUCLEOCAPSID PROTEIN
PROSPECT HILL VIRUS
36-58
218-236
256-277
321-346


PNCAP_PI1HC
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
42-58
 86-102


PNCAP_PI1HW
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN
42-58
 86-102




WASHINGTON/1957)


PNCAP_PI3B
NUCLEOCAPSID PROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
163-184


PNCAP_PI3H4
NUCLEOCAPSID PROTEIN
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
163-184


PNCAP_PUUMH
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN HALLNAS B1)
36-58
321-346


PNCAP_PUUMS
NUCLEOCAPSID PROTEIN
PUUMALA VIRUS (STRAIN SOTKAMO)
36-58
218-236
321-346


PNCAP_RABVA
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN AVO1)
299-322


PNCAP_RABVP
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN PV)
299-322


PNCAP_RABVS
NUCLEOCAPSID PROTEIN
RABIES VIRUS (STRAIN SAD B19)
299-322


PNCAP_RVFVZ
NUCLEOCAPSID PROTEIN
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
158-180


PNCAP_SENDS
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
29-51
 86-102


PNCAP_SENDE
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN ENDERS)
42-58
 86-102


PNCAP_SENDH
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN HARRIS)
42-58
 86-102


PNCAP_SENDZ
NUCLEOCAPSID PROTEIN
SENDAI VIRUS (STRAIN Z)
29-51
 86-102


PNCAP_SEOUS
NUCLEOCAPSID PROTEIN
SEOUL VIRUS (STRAIN SR-11)
112-138
317-342


PNCAP_SFSV
NUCLEOCAPSID PROTEIN
SANDFLY FEVER SICILIAN VIRUS
156-181


PNCAP_TACV
NUCLEOCAPSID PROTEIN
TACARIBE VIRUS
219-241


PNCAP_UUK
NUCLEOCAPSID PROTEIN
UUKUNIEMI VIRUS
167-189


PNCAP_VHSV0
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
240-266


PNCAP_VHSVM
NUCLEOCAPSID PROTEIN
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN
240-266




MAKAH)


PNCAP_VSVJO
NUCLEOCAPSID PROTEIN
VESICULAR STOMATITIS VIRUS (SEROTYPE
64-80




NEW JERSEY/STRAIN OG


PNCAP_VSVSJ


PNEF_HV2RO
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
110-129




(ISOLATE ROD)


PNEF_HV2ST
NEGATIVE FACTOR
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
106-128




(ISOLATE ST)


PNRAM_IABDA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/BLACK DUCK/
 3-29




AUSTRALIA/702/78)


PNRAM_IACHI
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
 3-24


PNRAM_IADA1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/28/76)
 3-24


PNRAM_IADGE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/DUCK/GERMANY/49)
 3-29


PNRAM_IAFPW
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
 3-29
301-317




VIRUS/WEYBRIDGE)


PNRAM_IAHCO
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/COR/16/14)
299-315


PNRAM_IAHK1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/KENTUCKY/1/81)
 3-29


PNRAM_IAKIE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
 3-24


PNRAM_IALEN
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
 3-24


PNRAM_IAME1
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/
 3-30




1/71H-A/BELLAMY/42N)


PNRAM_IAPAR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73)
 3-30


PNRAM_IAPUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
 3-30


PNRAM_IARUE
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/
 3-29




NEW JERSEY/60/


PNRAM_IASH2
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/SHEARWATER/
 3-29




AUSTRALIA/72)


PNRAM_IATKR
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
 3-24
56-77


PNRAM_IATRA
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/TERN/
 3-29




AUSTRALIA/G70C/75)


PNRAM_IAUSS
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
 3-24


PNRAM_IAWHM
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/1/84)
 3-29


PNRAM_IAWIL
NEURAMINIDASE
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
 3-30


PNRAM_INBBE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
 3-20


PNRAM_INBHK
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
 3-20


PNRAM_INBLE
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
 3-20


PNRAM_INBLN
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/LENINGRAD/179/86)
 3-20


PNRAM_INBMD
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
 3-20


PNRAM_INBMF
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/3/89)
 3-20


PNRAM_INBOR
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
 3-20


PNRAM_INBSI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
 3-20


PNRAM_INBUS
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN D/USSR/100/83)
 3-20


PNRAM_INBVI
NEURAMINIDASE
INFLUENZA B VIRUS (STRAIN B/VICTORIA/3/85)
 3-20


PNS1_SIDEV
PROBABLE NONSTRUCTURAL PROTEIN
BOMBYX DENSONUCLEOSIS VIRUS
135-151



PRECURSO


PNS2_SIDEV
PROBABLE STRUCTURAL PROTEIN
BOMBYX DENSONUCLEOSIS VIRUS
 2-26
196-221
783-806



PRECURSOR


PNS3_SIDEV
PROBABLE NONSTRUCTURAL PROTEIN
BOMBYX DENSONUCLEOSIS VIRUS
60-78



PRECURSO


PNSS_TSWVB
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (BRAZILIAN
 80-105
431-455




ISOLATE CPNH1/BR-01)


PNSS_TSWVL
NON-STRUCTURAL PROTEIN
TOMATO SPOTTED WILT VIRUS (STRAIN L3)
 80-105
436-458


PNTP1_VACCC
NUCLEOSIDE TRIPHOSPHATASE I
VACCINIA VIRUS (STRAIN COPENHAGEN)
20-45
387-403


PNTP1_VACCV
NUCLEOSIDE TRIPHOSPHATASE I
VACCINIA VIRUS (STRAIN WR)
20-45
387-403


PNTP1_VARV
NUCLEOSIDE TRIPHOSPHATASE I
VARIOLA VIRUS
293-309


PP100_HSV6U
MAJOR ANTIGENIC STRUCTURAL PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
182-204
250-270
344-366


PPAP2_FOWPV
POLY(A) POLYMERASE REGULATORY
FOWLPOX VIRUS
 79-100



SUBUNIT


PPAP2_MYXVA
POLY(A) POLYMERASE REGULATORY
MYXOMA VIRUS (ISOLATE AUST/URIARRA/VERG-86/1)
101-116



SUBUNIT


PPAP2_VACCC
POLY(A) POLYMERASE REGULATORY
VACCINIA VIRUS (STRAIN COPENHAGEN)
101-116



SUBUNIT


PPAP2_VACCV
POLY(A) POLYMERASE REGULATORY
VACCINIA VIRUS (STRAIN WR)
101-116



SUBUNIT


PPAP2_VARV
POLY(A) POLYMERASE REGULATORY
VARIOLA VIRUS
101-116



SUBUNIT


PPCNA_NPVAC
PROLIFERATING CELL NUCLEAR ANTIGEN
AUTOGRAPHA CALIFORNICA NUCLEAR
67-89
227-244




POLYHEDROSIS VIRUS


PPE21_NPVOP
21 2 KD PROTEIN IN PE 5′REGION
ORGYIA PSEUDOTSUGATA MULTICAPSID
117-139




POLYHEDROSIS VIRUS


PPE25_NPVAC
25 1 KD PROTEIN IN PE-P26 INTERGENIC
AUTOGRAPHA CALIFORNICA NUCLEAR
57-83



REGION
POLYHEDROSIS VIRUS


PPE38_NPVAC
MAJOR IMMEDIATE EARLY PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
17-33




POLYHEDROSIS VIRUS


PPEN3_ADE02
PENTON PROTEIN
HUMAN ADENOVIRUS TYPE 2
171-195


PPEN3_ADE05
PENTON PROTEIN
HUMAN ADENOVIRUS TYPE 5
171-195


PPEN3_ADEGX
PENTON PROTEIN
AVIAN ADENOVIRUS GAL10 (STRAIN SA2)
194-214
307-324


PPIV2_ADE07
MATURATION PROTEIN
HUMAN ADENOVIRUS TYPE 7
412-431


PPIV2_ADEM1
MATURATION PROTEIN
MOUSE ADENOVIRUS TYPE 1
409-428


PPOL1_BAYMG
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE)
739-755
835-856
1072-
1889-







1094
1910


PPOL1_BAYMU
GENOME POLYPROTEIN 1
BARLEY YELLOW MOSAIC VIRUS (JAPANESE
739-755
835-856
1072-
1465-
1888-




STRAIN II-1)


1094
1485
1909


PPOL1_GCMV
RNA1 POLYPROTEIN
HUNGARIAN GRAPEVINE CHROME MOSAIC VIRUS
691-717
1040-
1116-






1062
1143


PPOL1_GFLV
RNA1 POLYPROTEIN
GRAPEVINE FANLEAF VIRUS
380-396
477-503
545-564
1079-
1149-
1341-
1761-
1821-
2020-








1098
1171
1356
1785
1848
2044


PPOL1_TBRVS
RNA1 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
1132-





1159


PPOL2_ARMV
RNA2 POLYPROTEIN
ARABIS MOSAIC VIRUS
129-150
243-266
346-367


PPOL2_BAYMG
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS (GERMAN ISOLATE)
325-350
463-485


PPOL2_BAYMU
GENOME POLYPROTEIN 2
BARLEY YELLOW MOSAIC VIRUS (JAPANESE STRAIN II-1)
325-350
463-485


PPOL2_GFLV
RNA2 POLYPROTEIN
GRAPEVINE PANLEAF VIRUS
808-829
1021-






1045


PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S)
425-446
541-557
856-876
1203-








1233


PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY)
316-340
427-448
1527-







1554


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27)
1833-





1859


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL)
627-653
943-965
1119-
1282-
1363-
1868-
2460-
2608-
2883-







1134
1297
1387
1892
2487
2628
2898





3141-
3220-
3856-
3967-





3161
3241
3871
3986


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1)
627-653
943-965
1119-
1138-
1189-
1282-
1363-
1778-
2370-







1134
1163
1205
1297
1387
1802
2397





2518-
2741-
2793-
3766-





2538
2766
2808
3781


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
850-867


PPOLG_COXA3
GENOME POLYPROTEIN
COXSACKIEVIRUS A23 (ECHO 9 VIRUS)
67-92


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
1491-
1601-





1517
1626


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
1472-
1582-





1498
1607


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
228-255
1475-
1585-






1501
1610


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
821-846
1473-
1583-






1499
1608


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
1475-
1585-





1501
1610


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90)
918-943
1111-
1211-
1243-
1612-
2222-
2348-
2401-
3050-






1138
1236
1260
1628
2248
2365
2426
3069


PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN WESTERN PACIFIC)
919-944
1112-






1139


PPOLG_DEN23
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (ISOLATE MALAYSIA M3)
336-354


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
848-868
919-944
1112-
1244-
1283-
1613-
2293-
2347-
2405-







1139
1261
1301
1629
2318
2364
2425





2700-





2726


PPOLG_DEN27
GENONE POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
848-868
919-944
1112-
1244-
1283-
1376-
1613-
2293-
2347-







1139
1261
1301
1396
1629
2318
2364





2405-
2700-





2425
2726


PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
848-868
919-944


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMICA)
848-868
919-944
1112-
1244-
1376-
1613-
2293-
2347-
2405-







1139
1261
1396
1629
2318
2364
2425





2700-





2726


PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C)
100-120
171-196
364-391


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
919-944
1112-
1244-
1283-
1376-
1613-
2290-
2344-
2402-






1139
1261
1301
1396
1629
2315
2361
2422





2697-





2723


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974)
639-664
832-859
964-981
1203-








1219


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
917-942
1210-
1242-
1174-
1611-
2141-
2221-
2146-
2199-






1228
1259
1194
1627
2162
2247
2167
2424





2698-
3048-





2724
3067


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
1209-
1241-
1611-
2220-
2342-
2400-
3045-





1227
1258
1627
2246
2359
2420
3064


PPOLG_EC11G
GENOME POLYPROTEIN
ECHOVIRUS 11 (STRAIN GREGORY
664-690
774-799


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
225-247
558-578
1194-
1650-







1215
1667


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN
560-580
1120-
1196-




EMC-B NONDIABETOGENI

1141
1217


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN
560-580
1120-
1196-




EMC-D DIABETOGENIC)

1141
1217


PPOLG_ENMG3
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS (STRAIN 37A)
560-580


PPOLG_ENMGO
GENOME POLYPROTEIN
MENGO ENCEPHALOMYOCARDITIS VIRUS
493-513


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61)
121-141
 984-
1036-
1396-
1465-
1764-






1003
1057
1411
1487
1791


PPOLG_FMDV5
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A5)
162-187


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12)
121-140
 984-
1036-
1396-
1465-
1763-






1003
1057
1411
1487
1790


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAINS
121-141
 984-
1036-
1396-
1465-
1763-




O1K AND OIBFS) (

1003
1057
1411
1487
1790


PPOLG_FMDVS
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN
301-320




C1-SANTA PAU[C-S8])


PPOLG_FMDVT
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN C1)
121-141
979-998


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1)
112-133
143-169
619-640
683-699
833-857
2327-
2442-
2837-










2347
2457
2859


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT)
102-128
1143-
1282-
1778-
2370-
2518-
3131-
3737-
3767-






1163
1301
1802
2397
2538
3152
3753
3782





3877-





3893


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA)
102-128
1143-
1282-
1778-
2370-
2518-
3131-
3737-
3767-






1163
1301
1802
2397
2538
3152
3753
3782





3877-





3893


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK)
112-133
143-169
619-640
683-699
2327-
2441-
2836-
2988-









2347
2456
2858
3007


PPOLG_HCVE1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE EC1)
27-53


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H)
112-133
143-169
619-640
683-699
833-853
863-880
2442-
2837-











2457
2859


PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476)
112-133
143-169


PPOLG_HCVH7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT27)
15-41


PPOLG_HCVH8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCT18)
27-53


PPOLG_HCVHK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-KF)
112-133
143-169


PPOLG_HCVJ2
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J2)
112-133
143-169


PPOLG_HCVJ5
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J5)
112-133
143-169
623-644
687-703


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6)
112-133
143-169
623-644
687-703
837-861
1827-
2327-
2859-
3011-










1853
2347
2881
3030


PPOLG_HCVJ7
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J7)
143-169
623-644
687-703


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8)
112-133
143-169
687-703
837-861
867-884
1172-
1827-
2859-
3011-










1188
1853
2881
3030


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE)
112-133
143-169
619-640
683-699
833-857
863-880
2327-
2836-
2988-











2347
2858
3007


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-JT)
112-133
143-169
619-640
683-699
833-857
2327-
2441-
2836-










2347
2456
2858


PPOLG_HCVTH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TH)
27-53


PPOLG_HCVTW
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN)
112-133
143-169
619-640
683-699
833-857
2327-
2441-
2836-
2988-










2347
2456
2858
3007


PPOLG_HPAV1
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LCDC-1)
303-323


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
401-428
799-819
1195-
1687-
2008-
2068-







1210
1708
2033
2092


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C
799-819
1195-
1687-
2008-
2068-






1210
1708
2033
2092


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
799-819
1195-
1687-
2008-
2068-






1210
1708
2033
2092


PPOLG_HPAVC
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN CR326)
799-819


PPOLG_HPAVG
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN GA76)
778-798


PPOLG_HPAVH
GENOME POLYPROTEIN
HEIATITIS A VIRUS (STRAIN HM-175)
799-819
1195-
1688-
2009-
2069-






1210
1709
2034
2093


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
799-819
1195-
1688-
2009-
2069-






1210
1709
2034
2093


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
799-819
1195-
1688-
2009-
2069-






1210
1709
2034
2093


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27)
1199-
1690-
2012-
2072-





1214
1711
2037
2096


PPOLG_HPV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14
1383-
1962-





1406
1982


PPOLG_HRV1A
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1A (HRV-1A)
361-379
547-562


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
386-404
572-587
859-876
1029-
1453-
1625-
1816-
1941-








1052
1478
1641
1842
1961


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
569-584
694-713
1022-
1446-
1618-
1809-
1843-







1045
1469
1634
1835
1866


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
576-591
1038-
1229-
1332-
1460-
1632-
1823-
1948-






1061
1253
1358
1485
1648
1849
1968


PPOLG_HUHV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71)
1492-





1515


PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
905-922




(STRAIN OH)


PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14)
938-963
1306-
1642-
2245-
2326-
2462-






1325
1658
2270
2351
2481


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V))
938-963
1306-
1642-
2245-
2326-
2462-






1325
1658
2270
2351
2481


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982)
938-963
1306-
1642-
2245-
2326-
2462-






1325
1658
2270
2351
2481


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA)
866-891
1234-






1251


PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
561-576
935-960
1307-
1643-
2246-
2327-
2440-
2463-
2641-







1326
1659
2271
2352
2460
2483
2658





2798-





2814


PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
67-89
527-551
736-756
835-862
1157-
1519-
1630-
2158-
2230-









1178
1544
1653
2182
2257





2366-
2424-
2766-





2387
2451
2784


PPOLG_LANVY
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN YELANTSEV)
67-89
527-551


PPOLG_LIV
GENOME POLYPROTEIN
LOUPING ILL VIRUS (LI)
67-89
527-551
835-862


PPOLG_LIVSB
GENOME POLYPROTEIN
LOUPING ILL VIRUS (STRAIN SB 526)
247-271


PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT (CFA FLAVIVIRUS)
120-137
1174-
1402-
1788-
1872-
2012-
2810-






1199
1428
1805
1887
2029
2827


PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS
39-56


PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
331-347
563-578
937-962
1305-
1523-
1585-
1641-








1324
1548
1602
1657


PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
 90-110
111-126
678-696
898-914


PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE)
690-717
826-846
1009-
1301-
1455-
1484-
1676-
1921-
2002-







1034
1318
1482
1500
1697
1945
2022


PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1409-





1432


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
1410-





1433


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1408-





1431


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1408-





1431


PPOLG_POL32
GENOME POLYPROTE1N
POLIOVIRUS TYPE 3 (STRAIN 23127)
577-594
1407-






1430


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND
577-594
1407-




P3/LEON 12A[1]B)

1430


PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D)
153-178
551-571
714-741
1098-
1468-
1497-
2606-
3084-








1115
1495
1513
2624
3106


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR)
981-999
1461-






1483


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT)
153-178
713-740
1097-
1467-
1496-
2605-
3068-







1114
1494
1512
2623
3090


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC)
153-178
713-740
1097-
1467-
1496-
2605-
3083-







1114
1494
1512
2623
3105


PPOLG_PRSVH
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA)
272-290


PPOLG_PRSVP
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN P/MUTANT HA 5-1)
163-181


PPOLG_PRSVW
GENOME POLYPROTEIN
PAPAYA RINGSPOT VIRUS (STRAIN W)
163-181


PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPD1)
47-62
251-268
339-357
654-674
 981-
1411-
1565-
2708-









1001
1428
1592
2726


PPOLG_PVYC
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN C)
755-776


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN)
755-776
964-982
1010-
1109-
1456-
1485-
1677-
1922-
2588-







1036
1125
1483
1501
1698
1946
2606





3004-





3026


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N)
755-776
964-982
1010-
1109-
1456-
1485-
1677-
1922-
2590-







1036
1125
1483
1501
1698
1946
2608


PPOLG_PVYO
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN O)
755-776


PPOLG_PYFV1
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121)
592-616
1326-
1626-
1903-
2621-
2702-
2766-






1353
1651
1924
2642
2729
2783


PPOLG_STEVM
GENOME POLYPROTEIN
ST LOUIS ENCEPHALITIS VIRUS (STRAIN MSI-7)
1301-





1324


PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
39-56


PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76)
1475-
1585-





1501
1610


PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN UKG/27/72)
1475-
1585-





1501
1610


PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN)
67-89
527-551
1363-
1519-
1630-
1740-
2230-
2366-
2765-







1378
1544
1653
1761
2257
2387
2783


PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE)
67-89
527-551
835-862
1519-
1630-
2230-
2366-
2766-








1544
1653
2257
2387
2784


PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS (TEV
827-853
953-980
1016-
1114-
1307-
1490-







1042
1130
1324
1506


PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
924-941
1074-
1119-
1520-
1658-




(STRAIN BEAN 8386)

1095
1140
1546
1677


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
1072-
1117-
1518-
1656-




(STRAIN DA)
1093
1138
1544
1675


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS
645-670
924-941
1074-
1119-
1520-
1658-




(STRAIN GDVI1)


1095
1140
1546
1677


PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS
23-39
970-991
1138-
1573-







1156
1595


PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS
404-428
497-517
660-687
850-866
967-992
1257-
2537-










1274
2562


PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
198-218


PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
557-572
931-956
1303-
1639-
2240-
2324-
2437-
2638-
2795-







1322
1655
2267
2349
2457
2655
2811


PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
74-95
1157-
1228-
1385-
1495-
1625-
1761-
2229-






1179
1248
1405
1511
1641
1778
2254


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204)
74-95
1157-
1228-
1385-
1495-
1625-
1761-
2229-






1179
1248
1405
1511
1641
1778
2254


PPOLG_YEFV8
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 1899/81)
74-95


PPOLH_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1410-





1433


PPOLN_EEVVT
NONSTRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
 90-107
235-254
613-634
1001-
1153-
1923-
2129-
2201-




(STRAIN TRINIDAD DON



1018
1178
1939
2144
2221


PPOLN_FCVC6
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CF1/68 FIV)
443-469
748-766
902-923
1069-








1088


PPOLN_FCVF4
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4)
300-326


PPOLN_FCVF9
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN F9)
171-186
262-283
919-945
1224-
1378-
1545-








1242
1399
1564


PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA)
250-266
1274-






1291


PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO)
250-266
1272-






1289


PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR)
250-266
1274-






1291


PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN)
249-265
1273-






1290


PPOLN_MIDDV
NONSTRUCTURAL POLYPROTEIN
MIDDELBURG VIRUS
488-512
628-643
700-720


PPOLN_ONNVG
NONSTRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
 90-107
613-634
2148-
2220-







2163
2240


PPOLN_RHDV
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS
156-180
270-292
299-320
479-502
1330-
1429-
1471-









1353
1455
1490


PPOLN_RMDV3
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS (STRAIN V-351)
115-135


PPOLN_RRVN
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092)
 89-106
611-632
2113-
2185-







2128
2205


PPOLN_RRVT
NONSTRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
782-797
854-874


PPOLN_RUBVT
NONSTRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN)
14-37
 97-113
263-279
670-694
901-918
1374-
2035-










1393
2052


PPOLN_SFV
NONSTRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
 91-108
617-643
2062-
2134-







2077
2154


PPOLN_SINDO
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUDTYPE OCKELBO/STRAIN
620-646
1123-
1790-
2148-
2220-




EDSBYN 82-5)

1150
1814
2161
2240


PPOLN_SINDV
NONSTRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
620-646
1123-
1744-
1790-
2146-
2218-






1150
1763
1812
2161
2238


PPOLR_EPMV
RNA REPLICASE POLYPROTEIN
EGGPLANT MOSAIC VIRUS
808-833


PPOLR_OYMV
RNA REPLICASE POLYPROTEIN
ONONIS YELLOW MOSAIC VIRUS
707-727
941-962


PPOLR_TYMV
RNA REPLICASE POLYPROTEIN
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-







1192


PPOLR_TYMVA
RNA REPLICASE POLYPROTEIN
TURNIP YELLOW MOSAIC VIRUS
212-233
436-453
1173-




(AUSTRALIAN ISOLATE)


1192


PPOLR_TYMVC
RNA REPLICASE POLYPROTEIN
TURNIP YELLOW MOSAIC VIRUS (ISOLATE TYMC)
212-233
436-453
1173-







1192


PPOLS_EEEV
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
35-50
213-229
491-507


PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
35-50
214-230
492-508


PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
32-48
229-245
504-522




(STRAIN TC-83)


PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS
32-48
229-245
504-522




(STRAIN TRINIDAD DON


PPOLS_IBDV5
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
900-922




(STRAIN 52/70)


PPOLS_IBDVA
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
900-922




(STRAIN AUSTRALIAN 00


PPOLS_IBDVC
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
900-922




(STRAIN CU-1)


PPOLS_IBDVP
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
881-903




(STRAIN PBG-98)


PPOLS_IBDVS
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
900-922




(STRAIN STC)


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU)
688-708


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48)
1216-





1243


PPOLS_RUBVH
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN HPV77)
281-302


PPOLS_RUBVM
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN M33)
280-301


PPOLS_RUBVR
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (VACCINE STRAIN RA27/3
281-302


PPOLS_RUBVT
STRUCTURAL POLYPROTEIN
RUBELLA VIRUS (STRAIN THERIEN
281-302
1041-






1060


PPOLS_SFV
STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
35-59
751-772
780-801


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN
33-52




EDSBYN 82-5)


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
33-52


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
36-51
909-933


PPOL_AVIRE
POL POLYPROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
283-303


PPOL_BAEVM
POL POLYPROTEIN
BABOON ENDOGENOUS VIRUS (STRAIN M7)
526-544
973-993
 999-
1070-







1019
1091


PPOL_BIV06
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106)
101-119
742-768
868-889


PPOL_BIV27
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127)
101-119
742-768
868-889


PPOL_BLVAU
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE)
487-504


PPOL_BLVJ
POL POLYPROTEIN (REVERSE
BOVINE LEUKEMIA VIRUS (JAPANESE ISOLATE BLV-1)
487-504



TRANSCRIPTASE


PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS
393-419
656-671




(STRAIN CORK)


PPOL_CAMVC
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
184-204
380-407
471-494


PPOL_CAMVD
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
175-199
375-402
466-489


PPOL_CAMVE
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
184-204
380-407
471-494


PPOL_CAMVN
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
70-97
185-205
381-408
472-495


PPOL_CAMVS
ENZYMATIC POLYPROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
184-204
380-407
471-494


PPOL_CERV
ENZYMATIC POLYPROTEIN
CARNATION ETCHED RING VIRUS
161-186
455-478


PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS
320-343
1286-
1606-
1641-






1311
1622
1665


PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369)
437-456


PPOL_ELAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22)
437-456


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE
436-455




WYOMING)


PPOL_FENV1
POL POLYPROTEIN
FELINE ENDOGENOUS VIRUS ECEI
383-401
856-876


PPOL_FIVPE
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
407-426
755-775




PETALUMA)


PPOL_FIVSD
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE
407-426
755-775




SAN DIEGO)


PPOL_FIVT2
POL POLYPROTEIN
FELINE IMMUNODEFICIENCY VIRUS (ISOLATE TM2)
406-425
665-690
755-775
1041-








1060


PPOL_FMVD
ENZYMATIC POLYPROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
191-212
464-487


PPOL_FOAMV
POL POLYPROTEIN
HUMAN SPUMARETRO VIRUS
126-147
768-788


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
59-80
971-991
1048-







1071


PPOL_HTL1A
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATK)
330-346


PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
330-346




(CARIBBEAN ISOLATE)


PPOL_HTLV2
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE II
609-627


PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
860-887




(ARV2/SF2 ISOLATE)


PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
635-660
872-899




(BH10 ISOLATE)


PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
872-899




(BH5 ISOLATE)


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
872-899




(BRU ISOLATE)


PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
622-647
859-886




(ELI ISOLATE)


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
860-887




(HXB2 ISOLATE)


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
864-891




(JRCSF ISOLATE)


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
859-886




(MAL ISOLATE)


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
863-890




(MN ISOLATE)


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
623-648
860-887




(NEW YORK-5 ISOLATE)


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
622-647
859-886




(NDK ISOLATE)


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
860-887




(OYI ISOLATE)


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
635-660
872-899




(PV22 ISOLATE)


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
859-886




(RF/HAT ISOLATE)


PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
859-886




(STRAIN UGANDAN/ISO


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
622-647
859-886




(Z2/CDC-Z34 ISOLATE)


PPOL_HV1Z6
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 5-32




(ZAIRE 6 ISOLATE)


PPOL_HV2BE
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
379-406
907-934




(ISOLATE BEN)


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
886-913




(ISOLATE CAM2)


PPOL_HV2D1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
397-424
925-952




(ISOLATE D194)


PPOL_HV2D2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
907-934




(ISOLATE D205,7)


PPOL_HV2G1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
359-386
887-914




(ISOLATE GHANA-1)


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
543-564
771-792
887-914




(ISOLATE NIH-Z)


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
888-915




(ISOLATE ROD)


PPOL_HV2SB
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
359-386
887-907




(ISOLATE SBLISY)


PPOL_HV2ST
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
379-406
907-934




(ISOLATE ST)


PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE
166-190
198-225
460-477


PPOL_IPMA
PUTATIVE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
183-201
209-236
506-523
531-552
769-789


PPOL_IPMAI
PROBABLE POL POLYPROTEIN
MOUSE INTRACISTERNAL A-PARTICLE
102-120
128-155
407-423
425-442


PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
186-213
507-526
660-679




(JAAGSIEKTE SHEEP RET


PPOL_MCFF3
POL POLYPROTEIN
MINK CELL FOCUS-FORMING MURINE LEUKEMIA
37-53




VIRUS (ISOLATE CI-


PPOL_MLVAK
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
651-671
728-744


PPOL_MLVAV
POL POLYPROTEIN
AKR MURINE LEUKEMIA VIRUS
335-354
978-998
1004-
1081-







1024
1097


PPOL_MLVCB
POL POLYPROTEIN
CAS-BR-E MURINE LEUKEMIA VIRUS
64-84
 90-110
167-183


PPOL_MLVF5
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE 57)
340-359
 983-1003
1009-
1086-







1029
1102


PPOL_MLVFF
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE FB29)
340-359
 983-
1009-
1086-






1003
1029
1102


PPOL_MLVFP
POL POLYPROTEIN
FRIEND MURINE LEUKEMIA VIRUS (ISOLATE PVC-211)
340-359
 983-
1009-
1086-






1003
1029
1102


PPOL_MLVMO
POL POLYPROTEIN
MOLONEY MURINE LEUKEMIA VIRUS
335-354
978-998


PPOL_MLVRD
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
335-354
978-998
1004-
1081-







1024
1097


PPOL_MLVRK
POL POLYPROTEIN
RADIATION MURINE LEUKEMIA VIRUS
363-383
389-409
466-482




(STRAIN KAPLAN)


PPOL_MMTVB
POL POLYPROTEIN
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
196-219
731-751


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS
743-763


PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
369-395
469-488
632-647
1045-1063


PPOL_RSVP
POL POLYPROTEIN
ROUS SARCOMA VIRUS (STRAIN PRAGUE C)
719-742


PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
891-915
1058-






1083


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE
891-915
1058-




PHILIPPINES)

1083


PPOL_SFV1
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 1)
188-204
335-356
845-869
976-996


PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
186-206
337-358
847-871
978-998


PPOL_SIVA1
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM155 ISOLATE)
895-915


PPOL_SIVAG
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
711-726
900-920


PPOL_SIVAI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/
899-926




CLONE GRI-1)


PPOL_SIVAT
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE)
726-741
915-935


PPOL_SIVCZ
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS
884-911


PPOL_SIVGB
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
680-695
869-896


PPOL_SIVMI
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE)
380-407
908-935


PPOL_SIVMK
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE)
380-407
712-737
906-933


PPOL_SIVS4
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4
343-370
871-898




ISOLATE)


PPOL_SIVSP
POL POLYPROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE)
346-373
874-901


PPOL_SMRVH
POL POLYPROTEIN
SQUIRREL MONKEY RETROVIRUS
748-768


PPOL_SMSAV
POL POLYPROTEIN
SIMIAN SARCOMA VIRUS
100-120
177-200


PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
131-155


PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS
743-763


PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
488-507
651-666
971-991


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS1)
488-507
651-666
971-991


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-IKS2)
488-507
651-666
971-991


PPP15_HCMVA
LARGE STRUCTURAL PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
153-171
183-210



PP150


PPP28_HCMVA
28 KD STRUCTURAL PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
116-141


PPP41_HSV6G
PHOSPHOPROTEIN P41
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
158-175
396-411


PPP65_HCMVA
65 KD LOWER MATRIX PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
311-333


PPP65_HCMVT
64 KD LOWER MATRIX PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
301-323


PPP71_HCMVA
71 KD UPPER MATRIX PHOSPHOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 79-102


PPR73_MMTVB
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
40-61


PPR73_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
40-61


PPR7L_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
44-65


PPR7R_MMTVG
PROTEIN PR73
MOUSE MAMMARY TUMOR VIRUS (STRAIN GR)
40-61


PRASH_MSVHA
TRANSFORMING PROTEINS P21 AND P29
HARVEY MURINE SARCOMA VIRUS
49-73


PRASH_RRASV
TRANSFORMING PROTEINS P21 AND P29
RASHEED RAT SARCOMA VIRUS
56-80


PREEP_CSV
REPEAT ELEMEMT PROTEIN
CAMPOLETIS SONORENSIS VIRUS
14-36


PREFR_VACCV
RIFAMPICIN RESISTANCE PROTEIN
VACCINIA VIRUS (STRAIN WR), AND (STRAIN
274-298
316-335
517-535




COPENHAGEN)


PREFR_VARV
RIFAMPICIN RESISTANCE PROTEIN
VARIOLA VIRUS
274-298
316-335
517-535


PREV_SIVAG
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (AGM3 ISOLATE)
 2-17


PREV_SIVGB
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GB1)
45-72


PRIR1_ASFM2
RIBONUCLEOSIDE-DIPHOSPHATE
AFRICAN SWINE FEVER VIRUS (ISOLATE
139-164
189-210
495-510



REDUCTASE
MALAWI LIL 20/1)


PRIR1_EBV
RIBONUCLEOTIDE REDUCTASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
793-812


PRIR1_HCMVA
RIBONUCLEOTIDE REDUCTASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
192-212
669-684


PRIR1_HSVI1
RIBONUCLEOTIDE REDUCTASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
415-430
587-613


PRIR1_HSVEB
RIBONUCLEOTIDE REDUCTASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
60-85
266-288
668-694


PRIR1_HSVSA
RIBONUCLEOTIDE REDUCTASE
HERPESVIRUS SAIMIRI (STRAIN 11)
136-151


PRIR1_VACCC
RIBONUCLEOTIDE REDUCTASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
36-51


PRIR1_VACCV
RIBONUCLEOTIDE REDUCTASE
VACCINIA VIRUS (STRAIN WR)
36-51


PRIR1_VARV
RIBONUCLEOTIDE REDUCTASE
VARIOLA VIRUS
36-51


PRIR1_VZVD
RIBONUCLEOTIDE REDUCTASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
34-58
221-247
258-280


PRIR2_EBV
RIBONUCLEOTIDE REDUCTASE
EPSTEIN-BARR VIRUS (STRAIN B95-8)
209-236


PRIR2_HSVI1
RIBONUCLEOTIDE REDUCTASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
44-66
275-292


PRIR2_HSVIK
RIBONUCLEOTIDE REDUCTASE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
43-65
245-261
274-291


PRIR2_HSV23
RIBONUCLEOTIDE REDUCTASE
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
41-63
272-289


PRIR2_HSVB3
RIBONUCLEOTIDE REDUCTASE
BOVINE HERPESVIRUS TYPE 1 (STRAIN 34)
244-266


PRIR2_HSVEB
RIBONUCLEOTIDE REDUCTASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
61-88
251-273


PRIR2_HSVSA
RIBONUCLEOTIDE REDUCTASE
HERPESVIRUS SAIMIRI (STRAIN 11)
212-239


PRIR2_SFVKA
RIBONUCLEOTIDE REDUCTASE
SHOPE FIBROMA VIRUS (STRAIN KASZA)
184-206
215-237


PRIR2_VACCC
RIBONUCLEOTIDE REDUCTASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
184-206


PRIR2_VACCP
RIBONUCLEOTIDE REDUCTASE
VACCINIA VIRUS (STRAIN L-IVP
184-206


PRIR2_VACCV
RIBONUCLEOTIDE REDUCTASE
VACCINIA VIRUS (STRAIN WR)
184-206


PRIR2_VARV
RIBONUCLEOTIDE REDUCTASE
VARIOLA VIRUS
184-206
215-237


PRIR2_VZVD
RIBONUCLEOTIDE REDUCTASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
237-258


PRMIL_AVEVR
RMIL SER/THR-PROTEIN KINASE
AVAIN ROUS-ASSOCIATED VIRUS TYPE 1
380-405



TRANSFORMING P


PRP94_VACCV
RNA-POL-ASSOCIATED TRANSCRIPTION
VACCINIA VIRUS (STRAIN WR), AND
173-189
265-290
371-394
561-578



SPEC FACT
(STRAIN COPENHAGEN)


PRP94_VARV
RNA-POL-ASSOCIATED TRANSCRIPTION
VARIOLA VIRUS
173-189
265-290
371-394
561-578



SPEC FACT


PRPO1_VACCC
DNA-DIRECTED RNA POL 147 KD
VACCINIA VIRUS (STRAIN COPENHAGEN)
76-96
304-329
848-871
1005-



POLYPEPTIDE




1032


PRPO1_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
76-96
304-329
848-871



147 KD POLYPE


PRPO1_VARV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
76-96
304-329
848-871
1005-



147 KD POLYPE




1032


PRPO2_CAPVK
DNA-DIRECTED RNA POLYMERASE
CAPRIPOXVIRUS (STRAIN KS-1)
12-29
477-498



132 KD POLYPE


PRPO2_COWPX
DNA-DIRECTED RNA POLYMERASE
COWPOX VIRUS
150-170
258-274
480-505



132 KD POLYPE


PRPO2_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR), AND
150-170
258-274
480-505



132 KD POLYPE
(STRAIN COPENHAGEN)


PRPO2_VARV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
150-170
258-274
480-505



132 KD POLYPE


PRPO4_VACCC
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
33-48



35 KD POLYPEP


PRPO4_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR)
33-48



35 KD POLYPEP


PRPO4_VARV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
33-55



35 KD POLYPEP


PRPO6_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR), AND
38-59



19 KD POLYPEP
(STRAIN COPENHAGEN)


PRPO7_VACCV
DNA-DIRECTED RNA POLYMERASE
VACCINIA VIRUS (STRAIN WR), AND
38-59



19 KD POLYPEP
(STRAIN COPENHAGEN)


PRPO7_VARV
DNA-DIRECTED RNA POLYMERASE
VARIOLA VIRUS
38-59



19 KD POLYPEP


PRPO8_FOWP1
DNA-DIRECTED RNA POLYMERASE
FOWLPOX VIRUS (STRAIN FP-1)
57-81



18 KD POLYPEP


PRPOA_LELV
RNA-DIRECTED RNA POLYMERASE
LELYSTAD VIRUS
175-197
707-729
1164-
1233-
1513-
1531-
1955-
2120-
2802-







1180
1258
1530
1546
1977
2143
2823





3133-





3156


PRPOL_EAV
RNA-DIRECTED RNA POLYMERASE
EQUINE ARTERITIS VIRUS
 97-118
602-617
754-774
825-851
2530-
3041-









2553
3068


PRRP1_DHVI1
RNA-DIRECTED RNA POLYMERASE
DHORI VIRUS (STRAIN INDIAN/1313/61)
247-264
275-299
337-359
377-394
569-591



SUBUNIT P1


PRRP1_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
244-262



SUBUNIT P1


PRRP1_IABEI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/BEIJING/11/56)
244-262



SUBUNIT P1


PRRP1_IADUN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/DUNEDIN/4/73)
244-262



SUBUNIT P1


PRRP1_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/
244-262



SUBUNIT P1
704/77)


PRRP1_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/
244-262



SUBUNIT P1
1416/73)


PRRP1_IAHTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/
244-262



SUBUNIT P1
TENNESSEE/5/86)


PRRP1_IAKIE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
244-262



SUBUNIT P1


PRRP1_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
244-262



SUBUNIT P1


PRRP1_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
244-262



SUBUNIT P1


PRRP1_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
244-262



SUBUNIT P1


PRRP1_IALE3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57)
244-262



SUBUNIT P1


PRRP1_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/MALLARD/
244-262



SUBUNIT P1
NEW YORK/6750/78)


PRRP1_IAME8
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/MEMPHIS/8/88)
244-262



SUBUNIT P1


PRRP1_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
244-262



SUBUNIT P1


PRRP1_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
244-262



SUBUNIT P1


PRRP1_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
244-262



SUBUNIT P1


PRRP1_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/
244-262



SUBUNIT P1
833/80)


PRRP1_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
138-163
244-262



SUBUNIT P1


PRRP1_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
244-262



SUBUNIT P1


PRRP1_IAWIS
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/WISCONSIN/3523/88)
244-262



SUBUNIT P1


PRRP1_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/
244-262



SUBUNIT P1
126/82)


PRRP1_IAZON
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/ONTARIO/2/81)
244-262



SUBUNIT P1


PRRP1_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77)
244-262



SUBUNIT P1


PRRP1_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
205-222



SUBUNIT P1
[COLD-ADAPTED])


PRRP1_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
205-222



SUBUNIT P1
[WILD-TYPE])


PRRP1_INBLE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/LEE/40)
205-222



SUBUNIT P1


PRRP1_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/JJ/50)
317-341
564-591



SUBUNIT P1


PRRP2_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
534-557



SUBUNIT P2


PRRP2_IADH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
534-557



SUBUNIT P2


PRRP2_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
534-557



SUBUNIT P2
ROSTOCK/34)


PRRP2_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/
534-557



SUBUNIT P2
704/77)


PRRP2_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/
534-557



SUBUNIT P2
1416/73)


PRRP2_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
534-557



SUBUNIT P2


PRRP2_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
534-557



SUBUNIT P2


PRRP2_IAPI0
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/
534-557



SUBUNIT P2
119/79)


PRRP2_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
534-557



SUBUNIT P2


PRRP2_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/
534-557



SUBUNIT P2
NEW JERSEY/47/


PRRP2_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
534-557



SUBUNIT P2


PRRP2_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/
534-557



SUBUNIT P2
833/80)


PRRP2_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
68-86
534-557



SUBUNIT P2


PRRP2_IAZH2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/
534-557



SUBUNIT P2
81/78)


PRRP2_IAZH3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/
534-557



SUBUNIT P2
126/82)


PRRP2_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
534-557



SUBUNIT P2


PRRP2_IAZTF
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/
530-557



SUBUNIT P2
26/77)


PRRP2_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
32-54



SUBUNIT P2
[COLD-ADAPTED])


PRRP2_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
32-54



SUBUNIT P2
[WILD-TYPE])


PRRP2_INBSI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
32-54



SUBUNIT P2


PRRP2_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/JJ/50)
406-425



SUBUNIT P2


PRRP3_IAANN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
219-234
542-560



SUBUNIT P3


PRRP3_IABUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/
219-234



SUBUNIT P3
HOKKAIDO/1/77)


PRRP3_IACHI
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
219-234
542-560



SUBUNIT P3


PRRP3_IAFPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
219-234
542-567



SUBUNIT P3
ROSTOCK/34)


PRRP3_IAFPW
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
219-234
542-560



SUBUNIT P3
WEYBRIDGE)


PRRP3_IAGU2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/
219-234
542-560



SUBUNIT P3
704/77)


PRRP3_IAGUA
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/
219-234
542-560



SUBUNIT P3
227/84)


PRRP3_IAHK6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/
219-234
542-560



SUBUNIT P3
KENTUCKY/2/86)


PRRP3_IAHLO
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/
219-234
542-560



SUBUNIT P3
1416/73)


PRRP3_IAHPR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
219-234
542-560



SUBUNIT P3


PRRP3_IAKIE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
542-560



SUBUNIT P3


PRRP3_IAKOR
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
219-234
542-560



SUBUNIT P3


PRRP3_IALE1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
219-234
542-560



SUBUNIT P3


PRRP3_IALE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
219-234
542-560



SUBUNIT P3


PRRP3_IALE3
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/47/57)
219-234
542-560



SUBUNIT P3


PRRP3_IAMAN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/MALLARD/
219-234
542-560



SUBUNIT P3
NEW YORK/6750/78)


PRRP3_IAME8
RNA-DIRECTED RNA POLYMERASE

219-234
542-560



SUBUNIT P3


PRRP3_IANT6
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
219-234
542-560



SUBUNIT P3


PRRP3_IAPUE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
219-234
469-485
542-560



SUBUNIT P3


PRRP3_IARUD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/
219-234
542-560



SUBUNIT P3
NEW JERSEY/47/


PRRP3_LASE2
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/
219-234
542-560



SUBUNIT P3
133/82)


PRRP3_IASIN
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
219-234
542-560



SUBUNIT P3


PRRP3_IATKM
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/
219-234
542-560



SUBUNIT P3
833/80)


PRRP3_IAVI7
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
219-234
542-560



SUBUNIT P3


PRRP3_IAWIL
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
219-234
542-560



SUBUNIT P3


PRRP3_IAZI1
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
219-234
542-560



SUBUNIT P3


PRRP3_IAZTE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77)
219-234
542-560



SUBUNIT P3


PRRP3_INBAC
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
71-86
535-561



SUBUNIT P3
[COLD-ADAPTED])


PRRP3_INBAD
RNA-DIRECTED RNA POLYMERASE
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
71-86
535-561



SUBUNIT P3
[WILD-TYPE])


PRRP3_INCBE
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
74-96
552-571



SUBUNIT P3


PRRP3_INCJJ
RNA-DIRECTED RNA POLYMERASE
INFLUENZA C VIRUS (STRAIN C/JJ/50)
74-96
552-571



SUBUNIT P3


PRRP3_THOGV
RNA-DIRECTED RNA POL SUBUNIT P3
THOGOTO VIRUS
 85-101


PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
 82-104
410-436
858-878
1482-
1523-
1543-
2125-
2974-
3537-








1507
1542
1568
2149
2992
3559


PRRPA_CVMUD
RNA-DIRECTED RNA POLYMERASE
MURINE HEPATITIS VIRUS (STRAIN DEFECTIVE JHM)
440-467


PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
917-938
1188-
1338-
1422-
1461-
1567-
1783-
2165-
2337-






1215
1354
1449
1480
1585
1806
2192
2354





2470-
2660-
2944-
3229-
3405-
3933-





2494
2676
2961
3255
3425
3954


PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS
806-832
1509-
1738-
2137-






1527
1757
2154


PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
385-412
1302-
1835-
2698-






1324
1850
2723


PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
385-412
746-770
1302-
1833-
2696-







1324
1848
2721


PRRPB_CVPFS
RNA-DIRECTED RNA POLYMERASE
PORCINE TRANSMISSIBLE GASTROENTERITIS
173-200
482-508




CORONAVIRUS (STRAI


PRRPB_CVPR8
RNA-DIRECTED RNA POLYMERASE
PORCINE RESPIRATORY CORONAVIRUS (STRAIN
 80-106




86/137004/BRITISH I


PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS
140-164
338-365
887-991
1335-
1654-




(STRAIN BEAUDETTE)



1352
1674


PRRPL_BTV10
RNA-DIRECTED RNA POLYMERASE
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
21-41
146-161


PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
 78-104
303-324
440-465
1096-
1317-
1343-
1539-
1869-
2001-








1116
1338
1365
1554
1886
2027


PRRPL_EBOV
RNA-DIRECTED RNA POLYMERASE
EBOLA VIRUS
16-31


PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118)
151-168
173-194
596-611
1561-
2081-








1585
2105


PRRPL_HRSV
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS
 3-19


PRRPL_HRSVA
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
 3-19
1181-
1425-
1633-
1929-
2018-






1206
1447
1653
1948
2037


PRRPL_MABVM
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
15-30
144-169
223-248
317-341
471-492
546-569
931-946
1042-
1410-












1067
1436





1711-
1990-
2071-





1731
2017
2094


PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
15-30
144-169
223-248
471-492
546-569
931-946
1042-
1410-
1677-











1067
1436
1696





1715-
1805-
1990-
2071-
2223-





1731
1832
2017
2094
2246


PRRPL_MEASE
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
285-312
617-632
 998-
1160-
1279-
1920-
2038-







1023
1185
1304
1940
2063


PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
43-66
110-135
265-280
962-988
1100-
1132-
1601-
2128-









1124
1153
1622
2143


PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
704-724
1571-
1967-
2040-






1592
1994
2067


PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
109-124
268-291
308-334
1309-
1562-
1985-
2215-








1335
1588
2010
2234


PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
172-193
304-330
844-861
885-900
1848-
2068-
2111-









1868
2084
2134


PRRPL_PUUMH
RNA DIRECTED RNA POLYMERASE
PUUMALA VIRUS (STRAIN HALLNAS B1)
173-194
596-611
1561-
1677-
2086-







1585
1696
2110


PRRPL_RABVP
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
266-286
542-563
741-762
1446-
1492-








1461
1517


PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
266-286
542-563
741-762
1446-
1492-
1744-








1461
1517
1761


PRRPL_RDV
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS
10-27
533-560
680-697
1293-








1316


PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
582-609
2009-






2035


PRRPL_SEND5
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
64-83
104-120
194-218
844-861
885-900
1405-
1844-
2107-










1420
1864
2128


PRRPL_SENDE
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
14-38
664-681
705-720
1225-
1664-
1927-








1240
1684
1948


PRRPL_SENDZ
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
64-83
104-120
194-218
844-861
885-900
1405-
1844-
2107-










1420
1864
2128


PRRPL_SEOU8
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
151-168
173-194
394-419
596-611
1561-
2081-









1585
2105


PRRPL_SV5WR
RNA POLYMERASE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR)
43-66
108-124
263-289
1094-
1125-
1558-
2117-








1118
1147
1580
2137


PRRPL_SYNV
RNA POLYMERASE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS
126-146
391-406
605-627
704-731
863-883
996-911
1484-
1776-











1510
1792


PRRPL_TSWVB
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE
958-974
1385-
1778-
2609-
2678-




CPNH1/BR-01)

1410
1800
2627
2702


PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS
698-714
923-948
1404-
1570-
2060-







1431
1591
2081


PRRPL_VSVJH
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
156-183
312-339
903-928
1956-
2080-




NEW JERSEY/STRAIN HA



1982
2097


PRRPL_VSVJO
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
156-183
312-339
1956-
2080-




NEW JERSEY/STRAIN OG


1982
2101


PRRPL_VSVSJ
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
1956-





1982


PRRPO_ACLSV
RNA-DIRECTED RNA POLYMERASE
APPLE CHLOROTIC LEAF SPOT VIRUS
226-247
1036-
1132-
1775-






1054
1155
1791


PRRPO_BWYVF
PUTATIVE RNA-DIRECTED RNA POL
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
299-326


PRRPO_BYDVI
PUTATIVE RNA-DIRECTED RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PSI)
359-386
391-416
505-532


PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV)
359-386
391-416
505-532


PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA POL
BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV)
359-386
391-416
505-532


PRRPO_CARMV
PROBABLE RNA-DIRECTED RNA POL
CARNATION MOTTLE VIRUS
 4-30
 92-107
327-350
818-833


PRRPO_CGMVS
PUTATIVE RNA-DIRECTED RNA POL
CUCUMBER GREEN MOTTLE MOSAIC VIRUS
443-466
574-591
1017-
1523-




(WATERMELON STRAIN S


1032
1539


PRRPO_CNV
PROBABLE RNA-DIRECTED RNA POL
CUCUMBER NECROSIS VIRUS
277-300
345-371
470-494


PRRPO_CRV
PROBABLE RNA-DIRECTED RNA POL
CYMBIDIUM RINGSPOT VIRUS
 96-111
345-371
470-494


PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA POL
INFECTIOUS PANCREATIC NECROSIS VIRUS
221-238




(SEROTYPE JASPER)


PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
35-52
597-613
639-682
 988-
1234-
1770-
2077-




(STRAIN ARMSTRONG)



1008
1258
1795
2099


PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS
35-52




(STRAIN WE)


PRRPO_MCMV
PROBABLE RNA-DIRECTED RNA POL
MAIZE CHLOROTIC MOTTLE VIRUS
16-41
101-127
573-599


PRRPO_PEAMV
RNA-DIRECTED RNA POLYMERASE
PEA ENATION MOSAIC VIRUS
144-161
316-336
431-456
558-574


PRRPO_PLAV1
PUTATIVE RNA-DIRECTED RNA POL
POTATO LEAFROLL VIRUS (STRAIN 1)
331-358
576-600


PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA POL
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
331-358
576-600


PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA POL
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN)
375-395
702-726
1069-
1491-







1096
1507


PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA POL
RED CLOVER NECROTIC MOSAIC VIRUS
278-300


PRRPO_REOVJ
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 2/STRAIN D5/JONES)
161-176


PRRPO_REOVL
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 1/STRAIN LANG)
161-176


PRRPO_ROTBR
RNA-DIRECTED RNA POL SUBUNIT VP1
BOVINE ROTAVIRUS (STRAIN RF)
132-156
247-269
844-861
904-921
942-967
1027-










1046


PRRPO_ROTBU
RNA-DIRECTED RNA POL SUBUNIT VP1
BOVINE ROTAVIRUS (STRAIN UK)
132-156
247-269
844-861
904-921
942-967
1027-










1046


PRRPO_ROTPC
RNA-DIRECTED RNA POL SUBUNIT VP1
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
198-223
254-274
318-337
769-784
856-878
936-952


PRRPO_ROTPG
RNA-DIRECTED RNA POL SUBUNIT VP1
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
32-53
57-72
132-156
247-269
844-861
904-921
942-967
1027-












1046


PRRPO_ROTS1
RNA-DIRECTED RNA POL SUBUNIT VP1
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
132-156
247-269
844-861
904-921
942-967
1027-










1046


PRRPO_SBMV
PROBABLE RNA-DIRECTED RNA POL
SOUTHERN BEAN MOSAIC VIRUS
38-64
122-143
188-206
287-302
444-466
625-643
835-846


PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
 88-107
369-389
1281-
1676-
2019-







1301
1692
2046


PRRPO_TBSVC
PUTATIVE RNA-DIRECTED RNA POL
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
277-300
345-371
470-494


PRRPO_TCV
PUTATIVE RNA-DIRECTED RNA POL
TURNIP CRINKLE VIRUS
31-58
241-263


PRRPO_THGMV
PUTATIVE RNA-DIRECTED RNA POL
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
209-231
1085-






1100


PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA POL
TOBACCO MOSAIC VIRUS (VULGARE)
700-724
1090-
1587-






1105
1610


PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA POL
TOBACCO MOSAIC VIRUS (STRAIN KOREAN)
700-724
1090-
1587-






1105
1610


PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA POL
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L)
700-724
1090-
1151-
1587-






1105
1170
1610


PRRPO_TNVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN A)
113-135


PRRPO_TNVD
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN D)
 5-26


PRRPP_CHAV
RNA POLYMERASE ALPHA SUBUNIT
CHANDIPURA VIRUS (STRAIN 1653514)
124-146


PRRPP_MUMP1
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
211-238


PRRPP_MUMPE
RNA POLYMEEASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
212-239


PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
212-239


PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-
256-276




VICTORIA/32)


PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
256-276


PRRPP_PI2H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS
216-243


PRRPP_PI2HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
216-243


PRRPP_PI4HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
220-247


PRRPP_PI4HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333)
220-247


PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
134-161


PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
 8-32


PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
 8-32


PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND (STRAIN PM)
 8-32
216-237


PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
 8-32
216-237


PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
 8-32
216-237


PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3)
199-226
282-301


PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE
197-223




NEW JERSEY/STRAIN OG


PS27R_ASFB7
S273R PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
196-218


PSODC_VACCC
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
19-40


PSODC_VACCV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VACCINIA VIRUS (STRAIN WR)
19-40


PSODC_VARV
SUPEROXIDE DISMUTASE LIKE PROTEIN
VARIOLA VIRUS
19-40


PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS
58-79
627-646


PSPHR_CBEPV
SPHEROIDIN PRECURSOR
CHORISTONEURA BIENNIS ENTOMOPOXVIRUS
177-201


PSPII_MYXVL
SERPIN 1
MYXOMA VIRUS (STRAIN LAUSANNE)
62-80
217-243


PSWFA_SPVKA
SWF8A PROTEIN
SWINEPOX VIRUS (STRAIN KASZA)
61-83


PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS
354-369


PTALA_POVBA
LARGE T ANTIGEN
POLYOMAVIRUS BK (STRAIN AS)
202-224
429-444


PTALA_POVBK
LARGE T ANTIGEN
POLYOMAVIRUS BK
202-224
429-444


PTALA_POVBO
LARGE T ANTIGEN
BOVINE POLYOMAVIRUS
385-400


PTALA_POVHA
LARGE T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69
549-564


PTALA_POVJC
LARGE T ANTIGEN
POLYOMAVIRUS JC
201-223
428-443


PTALA_POVLY
LARGE T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
43-69
516-542


PTALA_POVM3
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
576-591


PTALA_POVMA
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
574-589


PTALA_POVMC
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD
571-586




SMALL-PLAQUE)


PTALA_POVMK
LARGE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN KILHAM)
173-191
278-304
446-472


PTALA_SV40
LARGE T ANTIGEN
SIMIAN VIRUS 40 (SV40)
200-222
427-442


PTAMI_POVHA
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69


PTASM_POVHA
SMALL T ANTIGEN
HAMSTER POLYOMAVIRUS
43-69


PTASM_POVLY
SMALL T ANTIGEN
LYMPHOTROPIC POLYOMAVIRUS
43-69


PTASM_POVMK
SMALL T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN KILHAM)
43-69
67-89


PTATR_NPVAC
TRANS-ACTIVATING TRANS REG PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
406-431




POLYHEDROSIS VIRUS


PTATR_NPVBM
TRANS-ACTIVATING TRANS REG PROTEIN
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
411-436


PTATR_NPVOP
TRANS-ACTIVATING TRANS REG PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
389-414




POLYHEDROSIS VIRUS


PTAT_BIV06
TRANS-ACTIVATING TRANS REG PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106)
44-59


PTAT_BIV27
TRANS-ACTIVATING TRANS REG PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127)
44-59


PTAT_HTL1A
TRANS-ACTIVATING TRANS REG PROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I (STRAIN ATK)
192-210


PTAT_HTL1C
TRANS-ACTIVATING TRANS REG PROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE I
192-210




(CARIBBEAN ISOLATE)


PTAT_HVIU4
TAT PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
18-43




(STRAIN UGANDAN/ISO


PTCB_FLV
T-CELL RECEPTOR BETA CHAIN PRECURSOR
FELINE LEUKEMIA VIRUS
 6-22
 98-118


PTEGP_HSVEB
PROBABLE TEGUMENT PHOSPHOPROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
101-118


PTEGP_HSVEK
TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
101-118


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
143-166
767-789
814-835
1052-
1194-
1469-
1869-
3061-
3102-








1075
1220
1496
1893
3077
3126


PTEGU_HCMVA
PROBABLE LARGE TEGUMENT PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
342-358
644-668
1061-
1307-
1323-
1419-
1509-
1957-
2199-







1077
1322
1345
1446
1536
1974
2221


PTEGU_HSVI1
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
12-27
623-646
1732-







1759


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
131-152
345-365
615-636
1027-
1308-
1562-








1043
1328
1579


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
432-456
559-582
1072-
1107-
1618-
1764-
2263-







1099
1132
1640
1791
2285


PTEGU_HSVSA
PROBABLE LARGE TEGUMENT PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
467-491
714-737
 989-
1121-
1155-
1177-
1503-
1607-
1898-







1008
1137
1174
1193
1525
1622
1915





2421-





2439


PTEGU_VZVD
LARGE TEGUMENT PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
433-456
494-511
711-728
801-823
895-920
1013-
1360-
1632-
1780-










1034
1376
1657
1807





2008-
2270-
2694-





2029
2287
2711


PTERM_ADE02
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 2
63-80
593-616


PTERM_ADE05
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 5
63-80
593-616


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
63-80
580-603


PTERM_ADE12
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 12
46-63
334-350
546-569


PTOP2_ASFB7
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
119-146
686-707


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE
119-146
685-706




MALAWI LIL 20/1)


PTR14_HCMVA
HYPOTHETICAL PROTEIN TRL14
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
139-165


PTREL_AVIRE
REL TRANSFORMING PROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
56-74


PTYSY_VZVD
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
11-29


PU15R_HSV6U
POSSIBLE GANCICLOVIR KINASE
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
400-415


PU2L_HSV6U
PROTEIN 2L
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
 4-27


PUDPE_NPVAC
UDP-GLUCOSYL TRANSFERASE PRECURSOR
AUTOGRAPHA CALIFORNICA NUCLEAR
452-477




POLYHEDROSIS VIRUS


PUL02_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
25-49


PUL05_HCMVA
HYPOTHETICAL PROTEIN UL5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
11-37


PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
253-268


PUL06_HCMVA
HYPOTHETICAL PROTEIN UL6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
191-208


PUL06_HSVI1
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-429


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
437-461


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
44-60


PUL07_EBV
BBRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
127-149


PUL07_HCMVA
HYPOTHETICAL PROTEIN UL7
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 88-108
186-209


PUL07_HSVI1
PROTEIN UL7
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
177-200


PUL07_HSVEB
GENE 55 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
11-32


PUL07_HSVSA
GENE 42 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
44-61


PUL07_VZVD
GENE 53 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
158-176
202-224


PUL08_HSVI1
PROTEIN UL8
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
514-538
705-726


PUL08_VZVD
GENE 52 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
228-255
593-616


PUL09_HSVI1
ORIGIN OF REPLICATION BINDING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
564-584


PUL09_HSVEB
ORIGIN OF REPLICATION BINDING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
171-196
612-628


PUL09_VZVD
ORIGIN OF REPLICATION BINDING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
68-92
168-190
484-508


PUL11_HCMVA
HYPOTHETICAL PROTEIN UL11
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
223-247


PUL13_HCMVA
HYPOTHETICAL PROTEIN UL13
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
449-467


PUL14_HCMVA
HYPOTHETICAL PROTEIN UL14
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
280-299


PUL14_HSVI1
HYPOTHETICAL UL14 PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 96-116


PUL14_HSVEB
HYPOTHETICAL GENE 48 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
100-127


PUL16_HSVI1
PROTEIN UL16
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
22-49


PUL16_HSVEB
GENE 46 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
26-43
 98-119
324-339


PUL16_HSVSA
GENE 33 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
69-87
278-295


PUL16_VZVD
GENE 44 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
65-80
317-332


PUL17_EBV
PROTEIN BGLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
373-393


PUL17_HCMVA
HYPOTHETICAL PROTEIN UL17
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
60-82


PUL17_HSVI1
PROTEIN UL17
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
156-181


PUL17_HSVSA
GENE 32 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 94-118
348-370


PUL19_HCMVA
HYPOTHETICAL PROTEIN UL19
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
61-85


PUL20_PRVN3
UL20 MEMBRANE PROTEIN HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3)
54-76


PUL20_VZVD
GENE 39 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
201-224


PUL21_HCMVA
HYPOTHETICAL PROTEIN UL21
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 91-110


PUL21_HSVI1
PROTEIN UL21
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 98-114
130-146


PUL21_HSVIE
PROTEIN UL21
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
 98-114
130-146


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P)
119-142
294-321
379-403
412-427


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
270-293
300-327


PUL22_HCMVA
HYPOTHETICAL PROTEIN UL22
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
44-67


PUL24_EBV
PROTEIN BXRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
134-155


PUL24_HCMVA
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
206-222


PUL24_HSVI1
PROTEIN UL24
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
147-166


PUL24_ILTVT
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN
158-179




THORNE V882)


PUL25_HCMVA
HYPOTHETICAL PROTEIN UL25
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
484-500


PUL25_HSVI1
VIRION PROTEIN UL25
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 86-101


PUL25_HSVEB
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 89-104
130-147


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
244-265
344-368


PUL25_ILTVT
64 1 KD VIRION PROTEIN
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN
270-287
316-336




THORNE V882)


PUL27_HCMVA
HYPOTHETICAL PROTEIN UL27
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
307-324
486-507


PUL29_HCMVA
HYPOTHETICAL PROTEIN UL29
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
239-266


PUL30_HCMVA
HYPOTHETICAL PROTEIN UL30
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 9-32


PUL31_EBV
PROTEIN BFLF2
EPSTEIN-BARR VIRUS (STRAIN B95-8)
273-296


PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
410-437
582-602


PUL31_HSVI1
PROTEIN UL31
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 95-116


PUL31_HSVEB
GENE 29 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
104-125
288-309


PUL31_HSVSA
GENE 69 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
145-161
163-190


PUL31_VZVD
GENE 27 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
117-138
295-316


PUL32_HSVI1
PROBABLE MAJOR ENV
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
127-143
564-585



GLYCOPROTEIN UL32


PUL32_HSVEB
MAJOR ENVELOPE GLYCOPROTEIN 300
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 81-108


PUL32_VZVD
PROBABLE MAJOR ENV GLYCOPROTEIN 26
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
553-574


PUL33_HCMVA
G-PROTEIN COUPLED REC HOMOLOG UL33
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 76-102


PUL34_HCMVA
HYPOTHETICAL PROTEIN UL34
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
214-232
297-321


PUL34_HSVI1
VIRION PROTEIN UL34
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
251-275


PUL34_HSVEB
VIRION GENE 26 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
249-264


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
207-229


PUL34_VZVD
VIRION GENE 24 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
244-266


PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
229-252
310-329
331-348


PUL36_HCMVA
HYPOTHETICAL PROTEIN UL36
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
143-168
387-410


PUL37_EBV
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
21-36
135-155
707-730
 984-








1004


PUL37_HSVI1
PROTEIN UL37
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
229-252
262-277
445-467
665-681
758-777
925-947
1009-











1028


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
414-440
491-510
664-690
778-805
901-919


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 5-20


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 4-19
104-124
140-165
168-191
196-212
229-244
248-269
670-694
776-803





904-923


PUL38_HCMVA
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
199-220


PUL40_HCMVA
HYPOTHETICAL PROTEIN UL40
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
18-35


PUL41_HCMVA
HYPOTHETICAL PROTEIN UL41
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
15-31
116-134


PUL43_HSVI1
MEMBRANE PROTEIN UL43
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
41-63
139-160
343-363
394-421


PUL43_HSVEB
GENE 17 MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
34-60
 86-107


PUL43_VZVD
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 88-114
127-146
160-180
277-299
374-400


PUL45_HSVI1
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
25-46


PUL45_HSV1K
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
25-46


PUL45_HSV1M
PROTEIN UL45
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN MP)
25-46


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
193-218
438-464
533-556
614-640
741-766


PUL47_HSVI1
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-425


PUL47_HSVIF
VIRION PROTEIN UL47
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
404-425


PUL47_HSVBP
80 7 KD ALPHA TRANS-INDUCING PROTEIN
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
681-702


PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 4
580-601


PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
587-608


PUL47_VZVD
ALPHA TRANS-INDUCING FACTOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
42-58
608-627



91 8 KD PROTEN


PUL49_EBV
HYPOTHETICAL BFRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
336-358


PUL49_HCMVA
HYPOTHETICAL PROTEIN UL49
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
248-264
528-543


PUL49_HSVI1
TEGUMENT PROTEIN UL49
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
226-252


PUL49_HSVSA
HYPOTHETCAL GENE 66 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
232-253


PUL50_HCMVA
PROTEIN UL50
HUMAN CYTOMEGOVIRUS (STRAIN AD169)
 96-119


PUL51_HSVI1
PROTEIN UL51
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
49-66


PUL51_HSVE4
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
169-190


PUL51_HSVEB
GENE 8 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
166-189


PUL51_VZVD
GENE 7 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
30-49


PUL52_EBV
PROBABLE DNA REPLICATION PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
44-59



BSLF1


PUL52_HSVI1
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
17-37
65-91


PUL52_HSVE4
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
 8-27


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
 8-27
135-159
316-337


PUL52_HSVSA
PROBABLE DNA REPLICATION GENE
HERPESVIRUS SAIMIRI (STRAIN 11)
489-508
586-605



56 PROTEIN


PUL52_VZVD
PROBABLE DNA REPLICATION GENE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
446-466
645-670



6 PROTEIN


PUL53_HCMVA
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
173-188


PUL53_HSV6U
UL53 PROTEIN HOMOLOG
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
64-80


PUL60_HCMVA
HYPOTHETICAL PROTEIN UL60
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
120-141


PUL62_HCMVA
HYPOTHETICAL PROTEIN UL62
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
62-84
178-205


PUL68_HCMVA
HYPOTHETICAL PROTEIN UL68
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 87-107


PUL70_HCMVA
PROBABLE DNA REPLICATION
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
225-252
409-430
499-514
626-645
770-793



PROTEIN UL70


PUL71_HCMVA
HYPOTHETICAL PROTEIN UL71
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
234-250


PUL73_EBV
HYPOTHETICAL BLRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
62-87


PUL73_HSVSA
HYPOTHETICAL GENE 53 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
51-73


PUL74_HCMVA
HYPOTHETICAL PROTEIN UL74
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
12-32


PUL77_HCMVA
VIRION PROTEIN UL77
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
268-291
607-628


PUL78_HCMVA
HYPOTHETICAL PROTEIN UL78
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
71-90
190-205


PUL79_HCMVA
HYPOTHETICAL PROTEIN UL79
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
40-58


PUL84_HCMVA
65 KD EARLY NONSTRUCTURAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
100-116


PUL84_HCMVT
65 KD EARLY NONSTRUCTURAL PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
100-116


PUL87_EBV
HYPOTHETICAL PROTEIN B(C)RF1
EPSTEIN-BARR VIRUS (STRAIN B95-8)
406-422
530-557


PUL87_HCMVA
HYPOTHETICAL PROTEIN UL87
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
205-231
309-335
606-628
633-653
757-781


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
301-322
507-529


PUL87_HSVSA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
365-387
402-422
579-595


PUL88_HCMVA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
173-191
252-279


PUL88_HSV6U
HYPOTHETICAL PROTEIN 6R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
150-173


PUL90_HCMVA
HYPOTHETICAL PROTEIN UL90
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
35-50


PUL91_HSV6U
HYPOTHETICAL PROTEIN 8R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
43-65


PUL92_HCMVA
HYPOTHETICAL PROTEIN UL92
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
76-99


PUL92_HSV6U
HYPOTHETICAL PROTEIN 9R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
36-55
100-119


PUL94_HCMVA
PROTEIN UL94
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
49-70


PUL95_EBV
HYPOTHETICAL PROTEIN BGLF3
EPSTEIN-BARR VIRUS (STRAIN B95-8)
201-223


PUL95_HCMVA
HYPOTHETICAL PROTEIN UL95
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
508-526


PUL95_HSV6U
HYPOTHETICAL PROTEIN 13R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
 9-30
328-346


PUL95_HSVSA
HYPOTHETICAL GENE 34 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
187-209


PUL97_HCMVA
GANCICLOVIR KINASE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
208-228
541-567


PULA2_HCMVA
HYPOTHETICAL PROTEIN UL102
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
168-183


PULA3_HCMVA
PROTEIN UL103
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
26-47


PULA4_HCMVA
VIRION PROTEIN UL104
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
215-235
423-450


PULA8_HCMVA
HYPOTHETICAL PROTEIN UL108
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 93-118


PULB1_HCMVA
HYPOTHETICAL PROTEIN UL111
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
60-81


PULB3_HCMVA
HYPOTHETICAL PROTEIN UL113
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
298-319


PULB7_HCMVA
HYPOTHETICAL PROTEIN UL117
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
178-195


PULB8_HCMVA
HYPOTHETICAL PROTEIN UL118
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
103-130


PULC1_HCMVA
HYPOTHETICAL PROTEIN UL121
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
129-153


PULD2_HCMVA
HYPOTHETICAL PROTEIN UL132
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 4-22


PUNG_FOWP1
URACIL-DNA GLYCOSYLASE
FOWLPOX VIRUS (STRAIN FP-1)
12-37


PUNG_HSVEB
URACIL-DNA GLYCOSYLASE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
224-250


PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
 82-103


PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
 82-103


PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
 82-103


PUNG_VZVD
URACIL-DNA GLYCOSYLASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
217-243


PUS02_HSVEB
GENE 68 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
48-63


PUS02_HSVEK
US1 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)
48-63


PUS02_PRVN3
PROTEIN US2 HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3)
120-136


PUS03_HCMVA
HQLF1 PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
24-39


PUS05_HSVI1
PUTATIVE GLYCOPROTEIN US5
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
53-70


PUS05_HSV2
PUTATIVE GLYCOPROTEIN US5
HERPES SIMPLEX VIRUS (TYPE 2)
53-70


PUS09_HCMVA
HYPOTHETICAL PROTEIN HXLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
179-206


PUS11_HCMVA
HYPOTHETICAL PROTEIN HXLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 98-113


PUS12_HCMVA
HYPOTHETICAL PROTEIN HVLF6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
29-50
113-135
195-222


PUS13_HCMVA
HYPOTHETICAL PROTEIN HVLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
11-33
208-231


PUS14_HCMVA
HYPOTHETICAL PROTEIN HVLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
236-260


PUS15_HCMVA
HYPOTHETICAL PROTEIN HVLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
378-402
443-466


PUS16_HCMVA
HYPOTHETICAL PROTEIN HVLF2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
151-174
243-267


PUS17_HCMVA
HYPOTHETICAL PROTEIN HVLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
110-126


PUS19_HCMVA
MEMBRANE PROTEIN HWLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
120-142
178-202
214-232


PUS21_HCMVA
HYPOTHETICAL PROTEIN HWLF2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
41-67
155-182


PUS22_HCMVA
EARLY NUCLEAR PROTEIN HWLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
270-292


PUS23_HCMVA
HYPOTHETICAL PROTEIN HHLF7
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
292-310


PUS24_HCMVA
HYPOTHETICAL PROTEIN HHLF6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
352-373


PUS28_HCMVA
G-PROTEIN COUPLED REC HOMOLOG US28
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
34-49
140-160


PUS28_HCMVT
G-PROTEIN COUPLED REC HOMOLOG US28
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
34-49
140-160


PUS29_HCMVA
HYPOTHETICAL PROTEIN HHRF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
246-269


PUS30_HCMVA
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
102-128
208-233


PUS33_HCMVA
HYPOTHETICAL PROTEIN HHLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
41-59


PV07K_LSV
7 KD PROTEIN
LILY SYMPTOMLESS VIRUS
27-46


PV07K_NMV
7 KD PROTEIN
POTATO VIRUS S (STRAIN PERUVIAN)
28-49


PV07K_PVSP
7 KD PROTEIN
POTATO VIRUS X (PVX)
31-48


PV07K_PVX
7 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
31-48


PV07K_PVXX3
7 KD PROTEIN
POTATO VIRUS X (STRAIN XC) (STRAIN CP)
31-48


PV117_ASFL5
LIS 121-1 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
73-94


PV121_ASFL5
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
59-79


PV12K_PVMR
12 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN)
79-96


PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
24-51


PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR
 79-102
846-863
1013-




POLYHEDROSIS VIRUS


1037


PV14K_BSMV
14 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
14-29
80-99


PV18K_MLVAB
18 KD PROTEIN
ABELSON MURINE LEUKEMIA VIRUS
29-44
128-154


PV19R_VACCV
PROTEIN B19
VACCINIA VIRUS (STRAIN WR)
114-132
152-172


PV1A_BBMV
1A PROTEIN
BROAD BEAN MOTTLE VIRUS
196-220
752-771


PV1A_BMV
1A PROTEIN
BROME MOSAIC VIRUS
747-767


PV1A_CCMV
1A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
744-763


PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
775-800


PV1A_CMVO
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
775-800


PV1A_CMVQ
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
774-799


PV1A_PSVJ
1A PROTEIN
PEANUT STUNT VIRUS (STRAIN J)
472-493
783-808


PV23K_HSVTH
23 5 KD PROTEIN
TURKEY HERPESVIRUS (STRAIN H2)
176-191


PV28K_PLRV1
28 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1) (
60-76
192-207


PV28K_PLRVW
28 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN)
60-76
192-207


PV29K_BWYVF
29 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1)
22-43
136-157


PV29K_PEBV
29 6 KD PROTEIN
PEA EARLY BROWNING VIRUS
114-132


PV2A_BMV
2A PROTEIN
BROME MOSAIC VIRUS
285-303
759-777


PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS
296-314


PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS
234-255


PV30K_TRVTC
29 1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
62-82


PV31K_TOBSV
31 7 KD PROTEIN
TOBACCO STREAK VIRUS (STRAIN WC)
226-250


PV362_ASFB7
K′362 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
145-164


PV375_ASFL5
LIS 375 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN LIS57)
114-135


PV382_ASFL5
LIS 382 PROTEIN
AFRICAN SWINE FRVER VIRUS (STRAIN LIS57)
114-135


PV3A_CCMV

COWPEA CHLOROTIC MOTTLE VIRUS
160-187


PV3A_CMVFN
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY)
214-235


PV3A_CMVM
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN M)
214-235


PV3A_CMVO
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN O)
214-235


PV3A_CMVQ
3A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q)
214-235


PV3A_CMVY

CUCUMBER MOSAIC VIRUS (STRAIN Y)
214-235


PV3A_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 5-28




(STRAIN BEAUDETTE)


PV3A_IBVM
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41)
 5-28


PV3A_IBVP3
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
 5-28




PORTUGAL/322/82)


PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
 5-28




UK/183/66)


PV3A_TAV
3A PROTEIN
TOMATO ASPERMY VIRUS
147-168


PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS
320-340


PV66K_BWYVF
PROTEIN 6B
CANINE ENTERIC CORONA VIRUS (STRAIN K378)
 97-116


PV70K_TYMVA
69 KD PROTEIN
TURNIP YELLOW MOSAIC VIRUS (AUSTRALIAN ISOLATE)
12-35


PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
44-59


PVA04_VACCC
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-244


PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
217-244


PVA04_VARV
PROTEIN A4
VARIOLA VIRUS
201-234


PVA09_VACCC
PROTEIN A9
VACCINIA VIRUS (STRAIN COPENHAGEN)
41-66


PVA09_VARV
PROTEIN A9
VARIOLA VIRUS
41-66


PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-44
140-159
299-317


PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
23-44
141-160
300-318


PVA14_VACCC
PROTEIN A14
VACCINIA VIRUS (STRAIN COPENHAGEN)
39-62


PVA14_VARV
PROTEIN A14
VARIOLA VIRUS
39-62


PVA16_VACCC
PROTEIN A16
VACCINIA VIRUS (STRAIN COPENHAGEN)
341-362


PVA16_VARV
PROTEIN A16
VARIOLA VIRUS
340-361


PVA18_VACCC
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
429-447


PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
429-447


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
429-447


PVA20_VACCC
PROTEIN A20
VACCINIA VIRUS (STRAIN COPENHAGEN)
107-131
193-209


PVA20_VARV
PROTEIN A20
VARIOLA VIRUS
107-131
193-209


PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
58-82


PVA28_VACCV
PROTEIN A28
VACCINIA VIRUS (STRAIN WR), AND
53-76




(STRAIN COPENHAGEN)


PVA28_VARV
PROTEIN A28
VARIOLA VIRUS
53-46


PVA32_VACCV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR), AND
205-220




(STRAIN COPENHAGEN)


PVA32_VARV
PROTEIN A32
VARIOLA VIRUS
175-190


PVA35_VACCC
PROTEIN A35 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
33-49


PVA35_VACCV
PROTEIN A35 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
33-49
141-164


PVA37_VACCC
PROTEIN A37
VACCINIA VIRUS (STRAIN COPENHAGEN)
66-90


PVA37_VACCV
PROTEIN A37
VACCINIA VIRUS (STRAIN WR)
66-90


PVA40_VACCC
PROTEIN A40
VACCINIA VIRUS (STRAIN COPENHAGEN)
 4-30


PVA41_VACCC
PROTEIN A41 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
47-71


PVA41_VACCV
PROTEIN A41 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
47-71


PVA41_VARV
PROTEIN A41 PRECURSOR
VARIOLA VIRUS
47-71


PVA47_VACCC
PROTEIN A47
VACCINIA VIRUS (STRAIN COPENHAGEN)
59-79
201-226


PVA47_VACCV
PROTEIN A47
VACCINIA VIRUS (STRAIN WR)
59-79
201-226


PVA47_VARV
PROTEIN A47
VARIOLA VIRUS
59-79
201-226


PVA55_VACCC
PROTEIN A55
VACCINIA VIRUS (STRAIN COPENHAGEN)
247-266
384-404


PVA55_VACCV
PROTEIN A55
VACCINIA VIRUS (STRAIN WR)
247-266
384-404


PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS
56-75


PVAL1_CLVK
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
55-74


PVAL1_CLVN
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
55-74


PVAL3_BCTV
AL3 PROTEIN
BEET CURLY TOP VIRUS
 82-108


PVAL3_CLVK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
77-97


PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
77-97


PVAL3_TYLCM
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS (STRAIN
78-97




MARMANDE)


PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
77-97


PVAT_CAMVC
APHID TRANSMSISION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
134-157


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
134-157


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
134-157


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
134-157


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147)
134-157


PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
134-157


PVAT_CAMVW
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
34-60


PVAT_CERV
APHID TRANSMISSION PROTEIN
CARNATION ETCHED RING VIRUS
141-161


PVAT_FMVD
APHID TRANSMISSION PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
132-159


PVB02_VACCC
PROTEIN B2
VACCINIA VIRUS (STRAIN COPENHAGEN)
155-170


PVB02_VACCV
PROTEIN B2
VACCINIA VIRUS (STRAIN WR)
155-170


PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
489-511


PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
489-511


PVB05_VACC0
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LC16MO)
251-271



PRECUSOR


PVB05_VACCC
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
251-271



PRECUSOR


PVB05_VACCL
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN LISTER)
251-271



PRECUSOR


PVB05_VACCV
PLAQUE-SIZE/HOST RANGE PROTEIN
VACCINIA VIRUS (STRAIN WR)
251-271



PRECUSOR


PVB06_VACCV
PROTEIN B6
VACCINIA VIRUS (STRAIN WR), AND
59-82




(STRAIN COPENHAGEN)


PVB15_VACCC
PROTEIN B15
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-143


PVB15_VACCV
PROTEIN B15
VACCINIA VIRUS (STRAIN WR)
121-143


PVB15_VARV
PROTEIN B15
VARIOLA VIRUS
121-143


PVB17_VACCC
PROTEIN B17
VACCINIA VIRUS (STRAIN COPENHAGEN)
157-179


PVB17_VACCV
PROTEIN B17
VACCINIA VIRUS (STRAIN WR)


PVBL1_CLVK
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
34-51


PVBL1_CLVN
BL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
34-51


PVBL1_SLCV
BL1 PROTEIN
SQUASH LEAF CURL VIRUS
245-268


PVBR1_ABMVW
BR1 PROTEIN
ABUTILON MOSAIC VIRUS (ISOLATE WEST INDIA)
166-191


PVBR1_BGMV
BR1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
166-191


PVBR1_PYMVV
BR1 PROTEIN
POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA)
166-191


PVBR1_SLCV
BR1 PROTEIN
SQUASH LEAF CURL VIRUS
193-218


PVC01_VACCC
PROTEIN C1
VACCINIA VIRUS (STRAIN COPENHAGEN)
70-90


PVC01_VACCV
PROTEIN C1
VACCINIA VIRUS (STRAIN WR)
75-95


PVC01_VARV
PROTEIN C1
VARIOLA VIRUS
58-78


PVC02_SFVKA
HYPOTHETICAL PROTEIN C2
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 8-31


PVC03_SFVKA
G-PROTEIN COUPLED RECEPTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 98-123
179-197



HOMOLOG C3


PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
182-209


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
183-208


PVC06_SFVKA
HYPOTHETICAL PROTEIN C6
SHOPE FIBROMA VIRUS (STRAIN KASZA)
20-47


PVC08_SFVKA
HYPOTHETICAL PROTEIN C8
SHOPE FIBROMA VIRUS (STRAIN KASZA)
14-30


PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
40-59


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
40-59


PVC10_SFVKA
HYPOTHETICAL PROTEIN C10
SHOPE FIBROMA VIRUS (STRAIN KASZA)
 85-109


PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-64


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
42-64


PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
42-64


PVC16_VACCC
PROTEIN C16/B22
VACCINIA VIRUS (STRAIN COPENHAGEN)
41-68


PVC17_VACCC
PROTEIN C17/B23
VACCINIA VIRUS (STRAIN COPENHAGEN)
301-326


PVC21_VACCC
PROTEIN C21/D27
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-28


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
148-172
366-381
1072-







1095


PVCAP_HCMVA
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
668-684
842-860
871-893


PVCAP_HSVI1
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
283-302
358-384
1137-







1152


PVCAP_HSVEB
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
357-383
872-898


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
144-168
269-287
357-372
1062-








1089


PVCAP_PRVIS
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S)
335-362


PVCAP_VZVD
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
381-401
891-910
1156-







1176


PVCG3_NPVAC
DNA-BINDING PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
60-81




POLYHEDROSIS VIRUS


PVD03_VACCC
PROTEIN D3
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-39


PVD03_VACCV
PROTEIN D3
VACCINIA VIRUS (STRAIN WR)
12-39


PVD03_VARV
PROTEIN D3
VARIOLA VIRUS
12-39


PVD05_FOWP1
92 6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
246-265
315-337


PVD05_SFVKA
PROTEIN D5
SHOPE FIBROMA VIRUS (STRAIN KASZA)
54-78
171-198


PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
320-340
694-714
715-734


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
320-340
694-714
715-734


PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
320-340
694-714
715-734


PVDBP_CAMVC
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
37-56


PVDBP_CAMVD
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
37-56


PVDBP_CAMVE
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
37-56


PVDBP_CAMVN
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
37-56


PVDBP_CAMVS
DNA-BINDING PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
37-56


PVE02_VACCC
PROTEIN E2
VACCINIA VIRUS (STRAIN COPENHAGEN)
70-97
355-380
540-558


PVE02_VACCV
PROTEIN E2
VACCINIA VIRUS (STRAIN WR)
70-97
353-380
540-558


PVE02_VARV
PROTEIN E2
VARIOLA VIRUS
70-97
355-380
540-558


PVE05_VACCC
PROTEIN E5
VACCINIA VIRUS (STRAIN COPENHAGEN)
314-329


PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN I)
324-339


PVE05_VACCV
PROTEIN E5
VACCINIA VIRUS (STRAIN WR)
324-339


PVE05_VARV
PROTEIN E5
VARIOLA VIRUS
324-339


PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
430-451


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
430-451


PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
251-267
430-451


PVE08_VACCC
PROTEIN E8
VACCINIA VIRUS (STRAIN COPENHAGEN)
254-270


PVE08_VACCV
PROTEIN E8
VACCINIA VIRUS (STRAIN WR)
254-270


PVE08_VARV
PROTEIN E8
VARIOLA VIRUS
254-270


PVE12_HPV16
PROBABLE E1 PROTEIN 2
HUMAN PAPILLOMAVIRUS TYPE 16
167-183


PVE18_NPVAC
EARLY 18 5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
106-133




POLYHEDROSIS VIRUS


PVE1_BPV1
E1 PROTEIN
BOVINE PAPILLOMAVIRUS TYPE 1
265-282
517-533


PVE1_BPV2
E1 PROTEIN
BOVINE PAPILLOMA1VIRUS TYPE 2
265-281
516-532


PVE1_CRPVK
E1 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
 7-22




(STRAIN KANSAS)


PVE1_HPV11
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
258-275
311-334


PVE1_HPV13
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
308-324


PVE1_HPV18
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
264-281
317-333
344-364


PVE1_HPV31
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
237-254


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
238-260


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
334-354


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
363-380


PVE1_HPV42
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
304-320


PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
238-260


PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
258-275
311-334


PVE1_PCPV1
E1 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
257-274
310-326


PVE1_RHPV1
E1 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
286-309


PVE2_CRPVK
PROBABLE E2 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
308-333




(STRAIN KANSAS)


PVE2_HPV11
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
285-310


PVE2_HPV13
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
295-320


PVE2_HPV18
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
288-306


PVE2_HPV1A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
284-300


PVE2_HPV2A
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
311-336


PVE2_HPV31
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
294-312


PVE2_HPV33
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
275-293


PVE2_HPV35
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
289-307


PVE2_HPV39
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
292-310


PVE2_HPV42
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
321-338


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
303-328


PVE2_HPV6B
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
286-311


PVE2_PAPVD
PROBABLE E2 PROTEIN
DEER PAPILLOMAVIRUS
333-351


PVE2_PCPV1
E2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
295-320


PVE2_RHPV1
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
290-308


PVE4_HPV18
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
39-59


PVE4_HPV41
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
56-76


PVE4_HPV51
PROBABLE E4 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
59-83


PVE4_RHPV1
PROBABLE E4 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
63-87


PVE5A_HPV11
PROBABLE ESA PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
19-42


PVE5A_HPV6C
PROBABLE ESA PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6C
19-42


PVE5_BPV1
E5 PROTEIN
BOVINE PAPILLOMAVIRUS TYPE 1, AND TYPE 2
 2-26


PVE5_HPV13
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
19-42


PVE5_HPV31
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
31-52


PVE5_HPV42
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
45-65


PVE5_HPV51
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
31-52


PVE5_HPVSB
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 89-113


PVE5_RHPV1
PROBABLE E5 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
109-132


PVE6_BPV1
E6 PROTEIN
BOVINE PAPILLOMAVIRUS TYPE 1
23-41


PVE6_CRPVK
E6 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
 6-23




(STRAIN KANSAS)


PVE6_HPV08
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
133-151


PVE6_HPV2A
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
 8-27


PVE6_HPV33
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
 9-26


PVE6_HPV35
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
 9-26


PVE6_HPV51
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
 9-26


PVE6_HPV57
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
 8-27


PVE6_HPV58
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
 9-26


PVE6_MMPV
E6 PROTEIN
MICROMYS MINUTUS PAPILLOMAVIRUS
 7-33
36-60


PVE7_CRPVK
E7 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
71-88




(STRAIN KANSAS)


PVE7_HPV13
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
77-93


PVE7_HPV51
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
61-87


PVE7_HPV6B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
20-37


PVE7_RHPV1
E7 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
 79-105


PVE94_NPVAC
EARLY 94 RD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
78-99
203-222




POLYHEDROSIS VIRUS


PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA NI GRANULOSIS VIRUS
154-175
237-260
677-696


PVENV_BEV
ENVELOPE PROTEIN
BERNE VIRUS
62-86
 87-114


PVENV_DHVI1
ENVELOPE GLYCOPROTEIN PRECURSOR
DHORI VIRUS (STRAIN INDIAN/1313/61)
42-57
484-511


PVENV_EAV
PROBABLE ENVELOPE PROTEIN
EQUINE ARTERITIS VIRUS
25-41


PVENV_LELV
PROBABLE ENVELOPE PROTEIN
LELYSTAD VIRUS
27-47
148-168


PVENV_MCV1
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1
61-80


PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2
61-80
306-333


PVENV_THOGV
ENVELOPE GLYCOPROTEIN PRECURSOR
THOGOTO VIRUS
196-221
356-383
473-491


PVETM_NPVAC
ECORI-T SITE PROTEIN ETM
AUTOGRAPHA CALIFORNICA NUCLEAR
 82-105




POLYHEDROSIS VIRUS


PVF05_VACCC
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
280-305



PRECURSOR


PVF05_VACCP
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
280-305



PRECURSOR


PVF05_VACCV
36 KD MAJOR MEMBRANE PROTEIN
VACCINIA VIRUS (STRAIN WR)
281-306



PRECURSOR


PVF05_VARV
36 KD MAJOR MEMBRANE PROTEIN
VARIOLA VIRUS
280-305



PRECURSOR


PVF09_VACCC
PROTEIN F9
VACCINIA VIRUS (STRAIN COPENHAGEN), AND
176-200




(STRAIN L-IVP)


PVF09_VACCV
PROTEIN F9
VACCINIA VIRUS (STRAIN WR)
176-200


PVF09_VARV
PROTEIN F9
VARIOLA VIRUS
176-200


PVF11_VACCC
PROTEIN F11
VACCINIA VIRUS (STRAIN COPENHAGEN)
161-184


PVF11_VARV
PROTEIN F11
VARIOLA VIRUS
161-184


PVF15_VACCC
PROTEIN F15
VACCINIA VIRUS (STRAIN COPENHAGEN)
25-48


PVF15_VACCP
PROTEIN F15
VACCINIA VIRUS (STRAIN L-IVP)
 3-26


PVF15_VARV
PROTEIN F15
VARIOLA VIRUS
28-51


PVFP1_FOWPV
PROTEIN FP1
FOWLPOX VIRUS
297-323


PVFP2_FOWPV
PROTEIN FP2
FOWLPOX VIRUS
 88-104


PVFP7_CAPVK
PROTEIN F7
CAPRIPOXVIRUS (STRAIN KS-1)
 89-111


PVFP7_FOWPV
PROTEIN FP7
FOWLPOX VIRUS
65-90


PVFP8_CAPVK
CF8A PROTEIN
CAPRIPOXVIRUS (STRAIN KS-1)
51-76


PVFUS_ORFNZ
10 KD FUSION PROTEIN
ORF VIRUS (STRAIN NZ2)
29-48


PVFUS_VACC6
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR 65-16)
72-94


PVG01_HSVEB
HYPOTHETICAL GENE 1 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
169-195


PVG01_HSVI1
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1
210-225
317-339
589-616


PVG01_VACCC
PROTEIN G1
VACCINIA VIRUS (STRAIN COPENHAGEN)
298-318
376-395


PVG01_VACCV
PROTEIN G1
VACCINIA VIRUS (STRAIN WR)
237-257
315-334


PVG01_VARV
PROTEIN G1
VAIRIOLA VIRUS
298-318
376-395


PVG01_VZVD
HYPOTHETICAL GENE 1 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
58-82


PVG03_VACCC
PROTEIN G3
VACCINIA VIRUS (STRAIN COPENHAGEN)
50-72


PVG03_VARV
PROTEIN G3
VARIOLA VIRUS
50-72


PVG04_VACCC
PROTEIN G4
VACCINIA VIRUS (STRAIN COPENHAGEN)
11-33


PVG04_VARV
PROTEIN G4
VARIOLA VIRUS
11-33


PVG06_VACCC
PROTEIN G6
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-51


PVG06_VARV
PROTEIN G6
VARIOLA VIRUS
31-51


PVG08_HSVI1
HYPOTHETICAL GENE 8 MEMBRANE
ICTALURID HERPESVIRUS 1
134-149
159-185



PROTEIN


PVG10_HSVI1
HYPOTHETICAL GENE 10 MEMBRANE
ICTALURID HERPESVIRUS 1
35-54



PROTEIN


PVG10_HSVSA
HERPESVIRUS SAIMIRI
HERPESVIRUS SAIMIRI (STRAIN 11)
109-124
355-379


PVG11_HSVI1
HYPOTHETICAL GENE 11 ZINC-BINDING
ICTALURID HERPESVIRUS 1
103-122
150-176



PROTEIN


PVG12_HSVI1
HYPOTHETICAL GENE 12 ZINC-BINDING
ICTALURID HERPESVIRUS 1
151-178
270-286



PROTEIN


PVG12_HSVSA
HYPOTHETICAL GENE 12 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
68-92


PVG19_HSVI1
HYPOTHETICAL GENE 19 MEMBRANE
ICTALURID HERPESVIRUS 1
 88-112



PROTEIN


PVG1L_AMEPV
GIL PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS
313-336


PVG1_SPV1R
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
76-92
659-678


PVG22_HSVI1
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1
300-327


PVG23_HSVI1
HYPOTHETICAL GENE 23 PROTEIN
ICTALURID HERPESVIRUS 1
314-335


PVG27_HSVI1
HYPOTHETICAL GENE 27 PROTEIN
ICTALURID HERPESVIRUS 1
158-184


PVG27_HSVSA
HYPOTHETICAL GENE 27 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
209-226


PVG28_HSVI1
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1
173-197
491-518


PVG28_HSVSA
HYPOTHETICAL GENE 28 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
14-40


PVG29_HSVI1
HYPOTHETICAL GENE 29 PROTEIN
ICTALURID HERPESVIRUS 1
20-42


PVG30_HSVI1
HYPOTHETICAL GENE 30 PROTEIN
ICTALURID HERPESVIRUS 1
166-191


PVG32_VZVD
GENE 32 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 90-109


PVG36_HSVSA
POSSIBLE TYROSINE-PROTEIN KINASE
HERPESVIRUS SAIMIRI (STRAIN 11)
108-123
344-362


PVG37_HSVI1
HYPOTHETICAL GENE 37 PROTEIN
ICTALURID HERPESVIRUS 1
284-299


PVG39_HSVI1
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1
648-675
970-990
1038-







1065


PVG40_HSVI1
HYPOTHETICAL GENE 40 PROTEIN
ICTALURID HERPESVIRUS 1
14-32


PVG41_HSVI1
HYPOTHETICAL GENE 41 PROTEIN
ICTALURID HERPESVIRUS 1
11-38
62-81
244-260


PVG43_HSVI1
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1
109-133
157-178
322-345
521-538


PVG46_HSVI1
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESYIRUS 1
134-156
580-607
937-963
1244-








1270


PVG48_HSVI1
HYPOTHETICAL GENE 48 PROTEIN
ICTALURID HERPESVIRUS 1
71-93


PVG50_HSVSA
PROB TRANSCRIPTION ACTIVATOR EDRF1
HERPESVIRUS SAIMIRI (STRAIN 11)
 5-30
58-83


PVG51_HSVI1
HYP GENE 51 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1
29-49
 84-102


PVG52_HSVI1
HYPOTHETICAL GENE 52 PROTEIN
ICTALURID HERPESVIRUS 1
229-252


PVG55_HSVI1
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPESVIRUS 1
22-37
143-158
288-309


PVG55_HSVSA
HYPOTHETICAL GENE 55 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 85-106


PVG56_HSVI1
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1
1155-





1176


PVG58_HSVSA
GENE 58 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
130-146
266-288
293-319
330-346


PVG59_HSVI1
HYP GENE 59 MEMBRANE PROTEIN
ICTALURID HERPESVIRUS 1
142-161
267-289


PVG5_SPV4
GENE 5 PROTEIN
SPIROPLASMA VIRUS 4
42-64


PVG60_HSVI1
HYPOTHETICAL GENE 60 PROTEIN
ICTALURID HERPESVIRUS 1
30-51
53-75


PVG61_HSVI1
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1
 76-102
117-136


PVG63_HSVI1
HYPOTHETICAL GENE 63 PROTEIN
ICTALURID HERPESVIRUS 1
238-259
336-363


PVG64_HSVI1
HYPOTHETICAL GENE 64 PROTEIN
ICTALURID HERPESVIRUS 1
420-445


PVG65_HSVI1
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1
117-137
155-173
362-378
518-533
1147-
1347-









1174
1369


PVG67_HSVI1
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1
108-132
171-188
318-344
722-745
1005-
1072-
1315-









1029
1091
1341


PVG6_SPYIR
GENE 6 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
60-82


PVG70_HSVI1
HYPOTHETICAL GENE 70 PROTEIN
ICTALURID HERPESVIRUS 1
184-209


PVG71_HSVSA
HYPOTHETICAL GENE 71 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 89-105


PVG72_HSVI1
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1
445-471
535-561
720-744
1252-








1269


PVG74_HSVSA
G-PROTEIN COUPLED REC HOMOLOG ECRF3
HERPESVIRUS SAIMIRI (STRAIN 11)
124-151


PVG9_SPVIR
GENE 9 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
57-72


PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
1587-
1856-
2108-
2210-
2788-
2973-
3073-
3120-
3374-




(STRAIN BEAUDETTE)
1606
1877
2127
2226
2806
2999
3090
3145
3399





3601-





3625


PVGH3_HCMVA
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
157-178


PVGL1_CVPR8
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
174-193




(STRAIN 86/137004/BRITISH IS


PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
10-33
123-139
174-190
264-279
 991-
1259-









1017
1280


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
123-139
174-190
264-279
651-674
 991-
1259-









1017
1280


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
10-33
123-139
174-190
264-279
 991-
1259-









1017
1280


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
123-139
174-190
264-279
 991-
1259-








1017
1280


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
31-47
123-139
174-190
264-279
 991-
1259-









1017
1280


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
123-139
174-190
264-279
 991-
1259-








1017
1280


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
768-794
1053-
1115-






1071
1134


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN WILD TYPE 4)
 95-111
 999-
1267-
1317-






1025
1290
1338


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59)
 95-111
947-973
1215-
1265-







1238
1286


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN
 95-111
 999-
1267-
1317-




JHMV/VARIANT CL-2)

1025
1290
1338


PVGL2_CVMUH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
 95-111
838-884
1126-
1176-







1149
1197


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
64-83
442-457
800-816
1038-
1274-




CORONAVIRUS (STRAI



1054
1297


PVGL2_CVPMI
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
64-83
442-457
506-521
800-816
1038-
1274-




CORONAVIRUS (STRAI




1064
1297


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
64-83
440-455
504-519
798-814
1036-
1272-




CORONAVIRUS (STRAI




1062
1295


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
64-83
440-455
504-519
798-814
1036-
1272-




CORONAVIRUS (STRAI




1062
1295


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
218-233
576-592
814-840
1050-




(STRAIN 86/137004/BRITISH I



1073


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
218-233
576-592
814-840
1050-








1073


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
64-83
440-455
504-519
798-814
1036-
1272-




CORONAVIRUS (STRAI




1062
1295


PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
803-819
1041-
1277-






1067
1300


PVGL2_IBV6
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82)
196-219
588-607
771-797
1056-
1094-








1081
1111


PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS
195-218
587-606
770-796
1055-




(STRAIN BEAUDETTE)



1080


PVGL2_IBVD2
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D274) (
196-219
588-607
771-797
1056-








1081


PVGL2_IBVD3
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN D3896)
196-219


PVGL2_IBVK
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
195-218
587-606
770-796
1055-








1080


PVGL2_IBVM
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41)
195-218
378-398
587-606
770-796
1055-









1080


PVGL2_IBVU1
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
178-201




UK/123/82)


PVGL2_IBVU2
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN
178-201




UK/142/86)


PVGL2_IBVU3
E2 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN UK/167/84)
178-201


PVGLB_EBV
GLYCOPROTEIN GP110 PRECURSOR
EPSTEIN-BARR VIRUS (STRAIN B95-8)
732-752


PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
535-558
706-732
750-777


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
536-559
707-733
751-778


PVGLB_HSVI1
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 83-104


PVGLB_HSV1F
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN F)
 82-103


PVGLB_HSV1K
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
 82-103


PVGLB_HSV1P
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN PATTON)
 83-104


PVGLB_HSV23
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/ STRAIN 333)
79-99


PVGLB_HSV2H
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN HG52)
79-99


PVGLB_HSV2S
GLYCOPROTEIN B PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN SA8)
65-85


PVGLB_HSV6U
GLYCOPROTEIN B (FRAGMENT)
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
72-92
117-144


PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
560-578
689-707


PVGLB_HSVB2
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV)
279-299
745-767




(BOVINE MAMMILLITIS


PVGLB_HSVBC
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
692-710


PVGLB_HSVE1
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (ISOLATE HVS25A)
736-753




(EHV-1)


PVGLB_HSVE4
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
675-692


PVGLB_HSVEA
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1)
736-753


PVGLB_HSVEB
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
736-753


PVGLB_HSVEL
GLYCOPROTEIN B PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D)
736-753


PVGLB_HSVMD
GLYCOPROTEIN B PRECURSOR
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
589-613


PVGLB_HSVSA
GLYCOPROTEIN B PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
483-506
584-602
701-716


PVGLB_ILTV6
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 632)
256-275
597-621
740-758


PVGLB_ILTVS
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN SA-2)
266-285
607-631
750-768


PVGLB_ILTVT
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN
266-285
607-631
750-768




THORNE V882)


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
135-156
566-589
738-765


PVGLB_PRVIF
GLYCOPROTEIN GII PRECURSOR
PSEUDORABIES VIRUS (STRAIN
203-218




INDIANA-FUNKHAUSER/BECKER)


PVGLB_VZVD
GLYCOPROTEIN B PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
522-538


PVGLC_HSVI1
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 3-22
467-493


PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
 3-22
467-493


PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
435-458


PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
436-459


PVGLC_HSVBC
GLYCOPROTEIN GIII PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
475-494


PVGLC_HSVE4
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
444-459


PVGLC_HSVEB
GLYCOPROTEIN C PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) AND
427-442




(STRAIN KENTUCK


PVGLC_HSVMB
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1)
399-421



PRECURSOR


PVGLC_HSVMD
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN RB-1B)
399-421



PRECURSOR


PVGLC_HSVMG
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN GA)
398-420



PRECURSOR


PVGLC_HSVMM
SECRETORY GLYCOPROTEIN GP57-65
MAREK'S DISEASE HERPESVIRUS (STRAIN MD5)
399-421



PRECURSOR


PVGLC_PRVIF
GLYCOPROTEIN GIII PRECURSOR
PSEUDORABIES VIRUS (STRAIN
180-197
446-472




INDIANA-FUNKHAUSER/BECKER)


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
431-449


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT)
431-449


PVGLD_HSVI1
GLYCOPROTEIN D PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17), AND
79-94




(TYPE 1/STRAIN


PVGLD_HSV2
GLYCOPROTEIN D PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
79-94


PVGLE_HSVI1
GLYCOPROTEIN E PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
104-129
413-437


PVGLE_VZVD
GLYCOPROTEIN E PRECURSOR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
469-493


PVGLF_BRSVA
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
205-221
265-287
482-504




(STRAIN A51908)


PVGLF_BRSVC
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS
205-221
265-280
484-506




(STRAIN COPENHAGEN)


PVGLF_BRSVR
FUSION GLYCOPROTEIN PRECURSOR
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94)
205-221
265-280
484-506


PVGLF_CDVO
FUSION GLYCOPROTEIN PRECURSOR
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
336-361
398-414
562-589


PVGLF_HRSV1
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
205-221
265-280
484-506




B/STRAIN 185


PVGLF_HRSVA
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
205-221
265-280
484-506


PVGLF_HRSVL
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP
205-221
265-280
484-506




A/STRAIN LO


PVGLF_HRSVR
FUSION GLYCOPROTEIN PRECURSOR
HUMAN RESPIRATORY SYNCYTIAL VIRUS
205-221
265-280
484-506




(STRAIN RSS-2)


PVGLF_MEASE
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN EDMONSTON) and
224-245
286-302
451-477




(STRAIN HALLE)


PVGLF_MEASI
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN IP-3-CA)
227-248
289-305
454-480


PVGLF_MEASY
FUSION GLYCOPROTEIN PRECURSOR
MEASLES VIRUS (STRAIN YAMAGATA-1)
224-245
286-302
451-477


PVGLF_MUMP1
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL-1)
 5-20
276-292
446-467


PVGLF_MUMPM
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
276-292
446-467


PVGLF_MUMPR
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN RW)
276-292
446-467


PVGLF_MUMPS
FUSION GLYCOPROTEIN PRECURSOR
MUMPS VIRUS (STRAIN SBL)
 5-20
276-292
446-467


PVGLF_NDVA
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN
273-289




AUSTRALIA-VICTORIA/32)


PVGLF_NDVB
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
273-289


PVGLF_NDVH3
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN HER/33)
273-289


PVGLF_NDVH4
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN B1-HITCHNER/47)
273-289


PVGLF_NDVL
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN LAS/46)
273-289


PVGLF_NDVM
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN MIYADERA/51)
273-289


PVGLF_NDVQ
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN QUEENSLAND/66)
273-289


PVGLF_NDVT
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS)
273-289


PVGLF_NDVTG
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN TEXAS G B/48)
273-289


PVGLF_NDVU
FUSION GLYCOPROTEIN PRECURSOR
NEWCASTLE DISEASE VIRUS (STRAIN ULSTER/67)
273-289


PVGLF_PHODV
FUSION GLYCOPROTEIN PRECURSOR
PHOCINE DISTEMPER VIRUS
269-285
305-326
367-383
531-558


PVGLF_PI1HC
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
456-477


PVGLF_PI2H
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (PIV-2)
450-471


PVGLF_PI2HG
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN GREER)
450-471


PVGLF_PI2HT
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
450-471


PVGLF_PI3B
FUSION GLYCOPROTEIN PRECURSOR
BOVINE PARAINFLUENZA 3 VIRUS
405-426
453-474


PVGLF_PI3H4
FUSION GLYCOPROTEIN PRECURSOR
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
 2-20
283-310
453-474


PVGLF_RINDK
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN KABETE O)
220-241
282-298
447-473


PVGLF_RINDL
FUSION GLYCOPROTEIN PRECURSOR
RINDERPEST VIRUS (STRAIN L)
220-241
282-298
447-473


PVGLF_SEND5
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
460-481


PVGLF_SENDF
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN FUSHIMI)
460-481


PVGLF_SENDH
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HARRIS)
460-481


PVGLF_SENDJ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN HVJ)
460-481


PVGLF_SENDZ
FUSION GLYCOPROTEIN PRECURSOR
SENDAI VIRUS (STRAIN Z)
460-481


PVGLF_SV41
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 41
453-474


PVGLF_SV5
FUSION GLYCOPROTEIN PRECURSOR
SIMIAN VIRUS 5 (STRAIN W3)
401-425
446-467


PVGLF_TRTV
FUSION GLYCOPROTEIN PRECURSOR
TURKEY RHINOTRACHEITIS VIRUS
175-191
452-474


PVGLG_IHNV
SPIKE GLYCOPROTEIN PRECURSOR
INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS
77-99




(STRAIN ROUND BUT


PVGLG_RABVE
SPIKE GLYCOPROTEIN PRECURSOR
RABIES VIRUS (STRAIN ERA)
454-474


PVGLG_RABVH
SPIKE GLYCOPROTEIN PRECURSOR
RABIES VIRUS (STRAIN HEP-FLURY)
372-391
454-474


PVGLG_RABVP
SPIKE GLYCOPROTEIN PRECURSOR
RABIES VIRUS (STRAIN PV)
454-474


PVGLG_RABVS
SPIKE GLYCOPROTEIN PRECURSOR
RABIES VIRUS (STRAIN SAD B19)
454-474


PVGLG_RABVT
SPIKE GLYCOPROTEIN PRECURSOR
RABIES VIRUS (STRAIN STREET)
454-474


PVGLG_TRTV
MAJOR SURFACE GLYCOPROTEIN G
TURKEY RHINOTRACHEITIS VIRUS
199-216


PVGLG_VHSV0
SPIKE GLYCOPROTEIN PRECURSOR
VIRAL HEMORRHAGIC SEPTICEMIA VIRUS (STRAIN 07-71)
406-428


PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
211-237
365-382
574-598
691-712


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
210-236
364-381
573-597
690-711


PVGLH_HSVI1
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
245-262
443-467
803-827


PVGLH_HSVIE
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN HFEM)
245-262
443-467
803-827


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
314-332


PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4 (STRAIN 1942)
304-325
814-839


PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) and
297-318
807-832




(ISOLATE HVS25A)


PVGLH_HSVSA
GLYCOPROTEIN H PRECURSOR
HERPESVIRUS SAIMIRI (STRAIN 11)
454-479
658-679


PVGLH_MCMVS
GLYCOPROTEIN H PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
670-690


PVGLI_HCMVA
IE GLYCOPROTEIN PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
158-180


PVGLI_HSVI1
GLYCOPROTEIN 1
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
43-60


PVGLI_HSVEB
GLYCOPROTEIN 1 PRECURSOR
EQUINE HERPESVIRUS TYPE 1
44-63


PVGLI_VZVD
GLYCOPROTEIN 1
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
278-297


PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
117-136
197-222


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
31-55
81-98
190-211
1325-
1387-








1345
1410


PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOE HARE
31-55
81-98
190-211
1325-
1387-








1345
1410


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
193-218
1379-






1404


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1)
355-371
692-717
900-915
 999-








1019


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
499-515
694-718
1000-







1020


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
499-515
694-719
1001-







1021


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN 76-118)
499-515
694-719
1001-







1021


PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS (INSV)
18-44
269-293
348-367
531-551
815-841


PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS
152-171


PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
743-765
 997-1016
1275-







1302


PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
155-174
509-525
712-729


PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
155-174
509-525
712-729
1092-








1117


PVGLM_RVFV
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS
53-80
344-368
830-856


PVGLM_RVFVZ
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12)
53-80
344-368
830-856
1156-








1176


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
355-371
692-717
900-915
 999-








1019


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R-22)
355-371
693-718
901-916
1000-








1020


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11) (SAPPORO RAT VIRUS)
355-371
693-717
900-915
 999-








1019


PVGLM_UUK
M POLYPROTEIN PRECURSOR
UUKUNIEMI VIRUS
561-585
655-674
826-842
925-952
966-989


PVGLP_BEV
PEPLOMER GLYCOPROTEIN PRECURSOR
BERNE VIRUS
430-452
869-885
1099-
1546-







1124
1568


PVGLX_HSVEB
GLYCOPROTEIN X PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)


PVGLX_HSVEK
GLYCOPROTEIN GX PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY A)


PVGLX_HSVEL
GLYCOPROTEIN GX
EQUINE HERPESVIRUS TYPE 1 (STRAIN KENTUCKY D)


PVGLX_PRVRI
SECRETED GLYCOPROTEIN GX
PSEUDORABIES VIRUS (STRAIN RICE)
149-176


PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN PRECURSOR
JUNIN ARENAVIRUS
12-38


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STAIN GA391)
12-38
237-258
426-448


PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LASSA VIRUS (STRAIN JOSIAH)
12-35
238-259
427-449


PVGLY_LYCVA
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN
12-35




ARMSTRONG)


PVGLY_LYCVW
GLYCOPROTEIN POLYPROTEIN PRECURSOR
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE)
12-35
 89-108


PVGLY_MOPEI
GLYCOPROTEIN POLYPROTEIN PRECURSOR
MOPEIA VIRUS
12-35
425-447


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
PICHINDE ARENAVIRUS
12-38
441-466


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS
12-38


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V5)
12-38


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN V7)
12-38


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN PRECURSOR
TACARIBE VIRUS (STRAIN TRVL 11598)
12-38


PVGNB_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS
141-161
569-594
757-783
1110-
1165-








1135
1184


PVGNM_CPMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS
311-335
741-764


PVGP2_EBV
PROBABLE MEMBRANE ANTIGEN GP220
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN
657-681




HERPESVIRUS 4)


PVGP3_EBV
ENVELOPE GLYCOPROTEIN GP340
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN
854-878




HERPESVIRUS 4)


PVGP8_EBV
PROBABLE MEMBRANE ANTIGEN GP85
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN
67-88




HERPESVIRUS 4)


PVGP_EBOV
STRUCTURAL GLYCOPROTEIN PRECURSOR
EBOLA VIRUS
34-52
537-561
653-675


PVGP_MABVM
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN MUSOKE)
538-562
607-627


PVGP_MABVP
STRUCTURAL GLYCOPROTEIN PRECURSOR
MARBURG VIRUS (STRAIN POPP)
538-562
607-627


PVH01_VACCC
PROTEIN-TYROSINE PHOSPHATASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
76-92
105-121


PVH01_VACCV
PROTEIN-TYROSINE PHOSPHATASE
VACCINIA VIRUS (STRAIN WR)
76-92
105-121


PVH01_VARV
PROTEIN-TYROSINE PHOSPHATASE
VARIOLA VIRUS
76-92
105-121


PVH07_VACCV
LATE PROTEIN H7
VACCINIA VIRUS (STRAIN WR)
70-97


PVH07_VARV
LATE PROTEIN H7
VARIOLA VIRUS
70-97


PVHEL_FXMV
PROBABLE HELICASE
FOXTAIL MOSAIC VIRUS
182-205


PVHEL_PMV
PROBABLE HELICASE
PAPAYA MOSAIC POTEXVIRUS
153-168


PVI01_VACCC
PROTEIN 11
VACCINIA VIRUS (STRAIN COPENHAGEN)
120-135


PVI01_VARV
PROTEIN 11
VARIOLA VIRUS
120-135


PVI03_VACCC
PROTEIN 13
VACCINIA VIRUS (STRAIN COPENHAGEN)
194-220


PVI03_VACCV
PROTEIN 13
VACCINIA VIRUS (STRAIN WR)
194-220


PVI03_VARV
PROTEIN 13
VARIOLA VIRUS
194-220


PVI06_VACCV
PROTEIN 16
VACCINIA VIRUS (STRAIN WR)
106-128
133-155


PVI06_VARV
PROTEIN 16
VARIOLA VIRUS
106-128
133-155


PVI07_VACCC
PROTEIN 17
VACCINIA VIRUS (STRAIN COPENHAGEN)
13-34
344-367


PVI07_VACCV
PROTEIN 17
VACCINIA VIRUS (STRAIN WR)
13-34
344-367


PVI07_VARV
PROTEIN 17
VARIOLA VIRUS
13-34
344-367


PVI08_VACCC
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN COPENHAGEN)
196-212
418-438


PVI08_VACCV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN WR)
196-212
418-438


PVI08_VARV
PUTATIVE RNA HELICASE 18
VARIOLA VIRUS
196-212
418-438


PVIE1_HCMVA
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 77-100
333-350


PVIE1_HCMVT
55 KD IMMEDIATE-EARLY PROTEIN 1
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
 77-100
333-350


PVIE2_HCMVA
45 KD IMMEDIATE-EARLY PROTEIN 2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
14-32
389-406


PVIE2_HCMVT
45 KD IMMEDIATE-EARLY PROTEIN 2
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
14-32
388-405


PVIE2_MCMVS
IMMEDIATE-EARLY PROTEIN 2
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
251-272


PVIE3_HCMVT
30 KD IMMEDIATE-EARLY PROTEIN 2
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
14-32


PVIEG_HSVSA
IMMEDIATE-EARLY PROTEIN IE-G
HERPESVIRUS SAIMIRI (STRAIN 11)
65-80


PVIEN_NPVAC
IMMEDIATE-EARLY REG PROTEIN IE-N
AUTOGRAPHA CALIFORNICA NUCLEAR
100-116
273-290




POLYHEDROSIS VIRUS


PVIMP_EBV
PROB INTEGRAL MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 75-100
123-152
203-222



BBRF3


PVIMP_HCMVA
PROBABLE INTEGRAL MEMBRANE PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
68-89
190-217


PVIMP_HSVI1
PROBABLE INTEGRAL MEMBRANE PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 83-110
250-270


PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
24-49
 93-120
145-172
247-263
301-321
332-358


PVIMP_HSVSA
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 76-101
313-331


PVIMP_VZVD
PROBABLE INTEGRAL MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
21-47
154-181
230-252


PVJ01_VACCC
PROTEIN J1
VACCINIA VIRUS (STRAIN COPENHAGEN)
 89-110


PVJ01_VACCV
PROTEIN J1
VACCINIA VIRUS (STRAIN WR)
 89-110


PVJ01_VARV
PROTEIN J1
VARIOLA VIRUS
 89-110


PVK04_VACCC
PROTEIN K4
VACCINIA VIRUS (STRAIN COPENHAGEN)
 87-113
208-234
319-337


PVK04_VACCV
PROTEIN K4
VACCINIA VIRUS (STRAIN WR)
 87-113
208-234
319-337


PVK05_VACCC
PROTEIN K5
VACCINIA VIRUS (STRAIN COPENHAGEN)
106-133


PVL02_VACCC
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
39-61


PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
39-61


PVL02_VARV
PROTEIN L2
VARIOLA VIRUS
39-61


PVL03_VACCC
PROTEIN L3
VACCINIA VIRUS (STRAIN COPENHAGEN)
148-164
186-208
292-315


PVL03_VACCV
PROTEIN L3
VACCINIA VIRUS (STRAIN WR)
148-164
186-208
292-315


PVL03_VARV
PROTEIN L3
VARIOLA VIRUS
147-163
185-207
291-314


PVL05_VACCV
PROTEIN L5
VACCINIA VIRUS (STRAIN WR), AND
16-39




(STRAIN COPENHAGEN)


PVL05_VARV
PROTEIN L5
VARIOLA VIRUS
16-39


PVL1_CRPVK
PROBABLE L1 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS
299-317




(STRAIN KANSAS)


PVL1_HPV18
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
28-55


PVL1_HPV41
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
38-63


PVL1_REOVD
MAJOR CORE PROTEIN LAMBDA 1
REOVIRUS (TYPE 3/STRAIN DEARING)
327-346
351-366
752-774


PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
254-270


PVL2_HPV11
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
32-58


PVL2_HPV13
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
33-59


PVL2_HPV16
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
34-60


PVL2_HPV18
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 18
33-59


PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
213-228


PVL2_HPV2A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 2A
 88-114


PVL2_HPV31
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
34-60
443-462


PVL2_HPV33
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
33-59
 99-114


PVL2_HPV35
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
34-60


PVL2_HPV41
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
39-58
414-436


PVL2_HPV42
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
33-59
344-370


PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
250-265


PVL2_HPV57
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
32-58


PLV2_HPV58
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
33-59
 99-114


PVL2_HPV6B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
33-59


PVL2_PAPVE
PROBABLE L2 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS
30-56


PVL2_RHPV1
PROBABLE L2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1
45-71


PVL3_HPV5B
PROBABLE L3 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 6-28


PVL3_REOVD
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 3/STRAIN DEARING
714-737


PVL3_REOVJ
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 2/STRAIN D5/JONES)
714-737
1213-






1236


PVL3_REOVL
MINOR CORE PROTEIN LAMBDA 3
REOVIRUS (TYPE 1/STRAIN LANG)
714-737


PVL96_IRVI
L96 PROTEIN
TIPULA IRIDESCENT VIRUS (TIV) (INSECT IRIDESCENT
144-170
196-220
686-711
845-861




VIRUS TYPE 1)


PVM01_VACCC
PROTEIN M1
VACCINIA VIRUS (STRAIN COPENHAGEN)
134-159
177-195
281-302


PVM01_VACCV
PROTEIN M1
VACCINIA VIRUS (STRAIN WR)
 83-108
126-144
230-251


PVM01_VARV
PROTEIN M1
VARIOLA VIRUS
 81-106
124-142
228-249


PVM1_REOVD
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 3/STRAIN DEARING)
141-168
227-245
280-304
324-347
414-436
454-477


PVM1_REOVL
MINOR VIRION STRUCTURAL PROTEIN MU-2
REOVIRUS (TYPE 1/STRAIN LANG)
141-168
227-245
280-304
414-436
454-477


PVM21_REOVD
MAJOR VIRION STRUC PROTEIN MU-1/MU-1C
REOVIRUS (TYPE 3/STRAIN DEARING)
168-192


PVM22_REOVD
MAJOR VIRION STRUCT PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
168-192



MU-1/MU-1C


PVM2_REOVJ
MAJOR VIRION STRUC PROTEIN MU-1/MU-1C
REOVIRUS (TYPE 2/STRAIN D5/JONES)
168-192


PVM2_REOVL
MAJOR VIRION STRUC PROTEIN MU-1/MU-1C
REOVIRUS (TYPE 1/STRAIN LANG)
168-192


PVM3_REOVD
MAJOR NONSTRUCTURAL PROTEIN MU-NS
REOVIRUS (TYPE 3/STRAIN DEARING)
304-326
521-540


PVMAT_BRSVA
MATRIX PROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS
37-62




(STRAIN A51908)


PVMAT_CDVO
MATRIX PROTEIN
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT)
148-165
283-309


PVMAT_HRSVA
MATRIX PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
44-62
139-160


PVMAT_LPMV
MATRIX PROTEIN
LA PIEDAD-MICHOACAN-MEXICO VIRUS
311-338


PVMAT_MEASE
MATRIX PROTEIN
MEASLES VIRUS (STRAIN EDMONSTON)
283-309


PVMAT_MEASH
MATRIX PROTEIN
MEASLES VIRUS (STRAIN HALLE)
283-309


PVMAT_MEASI
MATRIX PROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
 87-111


PVMAT_MEASU
MATRIX PROTEIN
MEASLES VIRUS (STRAIN HU2)
283-309


PVMAT_MUMP1
MATRIX PROTEIN
MUMPS VIRUS (STRAIN SBL-1)
191-207
227-250
310-330


PVMAT_MUMPS
MATRIX PROTEIN
MUMPS VIRUS (STRAIN SBL)
191-207
227-250
310-330


PVMAT_NDVA
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN
135-151
190-208
309-329




AUSTRALIA-VICTORIA/32)


PVMAT_NDVB
MATRIX PROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45)
135-151
190-208
309-329


PVMAT_PI1HC
MATRIX PROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
195-217


PVMAT_PI2HT
MATRIX PROTEIN
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA)
132-154
189-205
308-328




(PIV-2)


PVMAT_PI4HA
MATRIX PROTEIN
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA)
312-332




(PIV-4A)


PVMAT_PI4HB
MATRIX PROTEIN
HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333)
312-332




(PIV-4B)


PVMAT_RINDK
MATRIX PROTEIN
RINDERPEST VIRUS (STRAIN KABETE O)
200-221
239-260
283-309


PVMAT_SENDF
MATRIX PROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
195-217


PVMAT_SENDH
MATRIX PROTEIN
SENDAI VIRUS (STRAIN HARRIS)
195-217


PVMAT_SENDZ
MATRIX PROTEIN
SENDAI VIRUS (STRAIN Z)
195-217


PVMAT_SSPVB
MATRIX PROTEIN
SUBACUTE SCLEROSING PANENCEPHALITIS VIRUS
283-309
314-338




(STRAIN BIKEN)


PVMAT_SV41
MATRIX PROTEIN
SIMIAN VIRUS 41
132-154
189-205
308-328


PVMAT_SV5
MATRIX PROTEIN
SIMIAN VIRUS 5 (STRAIN W3)
 98-114
132-148
308-335


PVMAT_SVCV
MATRIX PROTEIN
SPRING VIREMIA OF CARP VIRUS (RHABDOVIRUS
141-167




CARPIA)


PVMAT_TRTV
MATRIX PROTEIN
TURKEY RHINOTRACHEITIS VIRUS
122-143


PVME1_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
 9-36
137-161
171-190


PVME1_CVH22
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS (STRAIN 229E)
136-155


PVME1_CVHOC
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
 9-36
64-85
137-161


PVME1_CVMA5
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
10-37


PVME1_CVMJH
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
10-37


PVME1_CVPFS
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
174-193




CORONAVIRUS (STRAI


PVME1_CVPPU
E1 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS
169-193
174-193




CORONAVIRUS (STRAI


PVME1_CVPRM
E1 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
174-193


PVME1_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS
 9-36
137-161
171-190


PVME1_IBV6
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN 6/82)
74-98


PVME1_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 74-101




(STRAIN BEAUDETTE)


PVME1_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 74-101




(STRAIN BEAUDETTE M42)


PVME1_IBVK
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN KB8523)
74-98


PVMEM_EBV
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
131-157
178-203


PVMP_CAMVC
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841)
118-134
147-164
183-201


PVMP_CAMVD
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H)
118-134
147-164
183-201


PVMP_CAMVE
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC)
118-134
147-164
183-201


PVMP_CAMVN
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153)
118-134
147-164
183-201


PVMP_CAMVS
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG)
118-134
147-164
183-201


PVMP_CAMVW
MOVEMENT PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN W260)
118-134
147-164
183-201


PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS
293-318


PVMP_FMVD
MOVEMENT PROTEIN
FIGWORT MOSAIC VIRUS (STRAIN DXS)
115-131
180-198


PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
122-147
273-299


PVMSA_HPBDB
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK
201-228
269-295




ISOLATE S5)


PVMSA_HPBDC
MAJOR SURFACE ANFIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (STRAIN CHINA)
194-221
268-294


PVMSA_HPBDU
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS
157-184
231-257


PVMSA_HPBDW
MAJOR SURFACE ANTIGEN PRECURSOR
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK
194-221
269-295




ISOLATE S31)


PVMSA_HPBGS
MAJOR SURFACE ANTIGEN PRECURSOR
GROUND SQUIRREL HEPATITIS VIRUS
209-236
271-295
380-395


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN PRECURSOR
HERON HEPATITIS B VIRUS
236-262
293-320


PVMSA_HPBV0
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
11-28
70-96


PVMSA_HPBV2
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW2)
185-202
244-270


PVMSA_HPBV4
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR4)
185-202
244-270


PVMSA_HPBV9
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 991)
244-270


PVMSA_HPBVA
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (STRAIN ALPHA1)
174-191
233-259


PVMSA_HPBVD
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AD)
11-28
70-96


PVMSA_HPBVI
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
233-259




INDONESIA/PIDW420)


PVMSA_HPBVJ
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN
174-191
233-259




JAPAN/PJDW233)


PVMSA_HPBVL
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (STRAIN LSH/CHIMPANZEE ISOLATE
174-191
233-259


PVMSA_HPBVN
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN NC-1)
11-28
70-96


PVMSA_HPBVO
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN
174-191
233-259




OKINAWA/PODW282)


PVMSA_HPBVP
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN
185-202
244-270




PHILIPPINO/PFDW294)


PVMSA_HPBVR
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADR)
185-202
244-270


PVMSA_HPBVS
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AR)
11-28
70-96


PVMSA_HPBVW
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADW)
174-191
233-259


PVMSA_HPBVY
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE AYW)
174-191
233-259


PVMSA_HPBVZ
MAJOR SURFACE ANTIGEN PRECURSOR
HEPATITIS B VIRUS (SUBTYPE ADYW)
174-191
233-259


PVMSA_WHV1
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 1
207-234
269-293
378-393


PVMSA_WHV59
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 59
212-239
274-298
383-398


PVMSA_WHV7
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 7
212-239
274-298
383-398


PVMSA_WHV8
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS 8
212-239
274-298
383-398


PVMSA_WHV8I
PROB MAJOR SURFACE ANTIGEN PREC
WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE)
212-239
274-298
383-398


PVMSA_WHVW6
MAJOR SURFACE ANTIGEN PRECURSOR
WOODCHUCK HEPATITIS VIRUS W64 (ISOLATE PWS23)
125-149
234-249


PVMT2_IAANN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
25-46


PVMT2_IABAN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/BANGKOK/1/79)
25-46


PVMT2_IAFOW
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
25-46


PVMT2_IAFPR
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
25-46




ROSTOCK/34)


PVMT2_IAFPW
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE
25-46




VIRUS/WEYBRIDGE)


PVMT2_IALE1
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
25-46


PVMT2_IALE2
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
25-46


PVMT2_IAMAN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/MALLARD/
25-46




NEW YORK/6750/78)


PVMT2_IAPUE
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
25-46


PVMT2_IASIN
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
25-46


PVMT2_IAUDO
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
25-46


PVMT2_IAWIL
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
25-46


PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
226-241


PVN34_ROTBS
NONSTRUCTURAL PROTEIN NS34
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
334-351


PVNBP_PVSP
10 7 KD PROTEIN
POTATO VIRUS S (STRAIN PERUVIAN)
21-36


PVNB_INBBE
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/BEIJING/1/87)
13-39


PVNB_INBHK
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/HONG KONG/8/73)
13-39


PVNB_INBLE
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/LEE/40)
13-39


PVNB_INBLN
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/LENINGRAD/179/86)
13-39


PVNB_INBMD
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/MARYLAND/59)
13-39


PVNB_INBMF
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/MEMPHIS/3/89)
13-39


PVNB_INBOR
NB GLYCOPROTEIN
INFLUENZA B VIRUS (STRAIN B/OREGON/5/80)
13-39


PVNCS_ADVG
NONCAPSID PROTEIN NS-1
ALUETIAN MINK DISEASE PARVOVIRUS (STRAIN G)
81-96
169-190


PVNCS_AEDEV
NONCAPSID PROTEIN NS-1
AEDES DENSONUCLEOSIS VIRUS (STRAIN
675-690




GKV 002 002) (AEDES DENS


PVNCS_PAVHB
NONCAPSID PROTEIN NS-1
HUMAN PARAVOVIRUS B19
575-597


PVNCS_PAVHH
NONCAPSID PROTEIN NS-1
HAMSTER PARAVOVIRUS H1
140-165


PVNS1_AHSV4
NONSTRUCTURAL PROTEIN NS1
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE
256-272




4/STRAIN VACCINE)


PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77)
31-50
114-137
167-192


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
31-50
114-137
167-192


PVNS1_IACAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CAMEL/MONGOLIA/82)
19-38


PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
31-50
114-137
167-192


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
31-50
167-192




GERMANY/N/49)


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24)
28-47
164-189


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
31-50
167-192


PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
28-47
164-189


PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
28-47
164-189


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
31-50
114-137
167-192


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50), AND
31-50
114-137
167-192




(STRAIN A/


PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
31-50
167-192




ROSTOCK/34)


PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
31-50
114-137
167-192


PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
31-50
114-137
167-192


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/
31-50
167-192




ALBERTA/88/76)


PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/
31-50
167-192




NEW YORK/6750/78)


PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/
31-50
167-192




NEW YORK/6874/78)


PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MYNAH/
28-47
164-189




HANEDA-THAI/76)


PVNS1_IAPI0
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/
167-192




ALBERTA/119/79)


PVNS1_IAPI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/
31-50
167-192




ALBERTA/121/79)


PVNS1_IAPI2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/
31-50
167-192




ALBERTA/268/78)


PVNS1_IAPI3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/
31-50
167-192




ALBERTA/358/79)


PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
31-50
114-137
167-192


PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/
31-50
167-192




BETHLEHEM-GLILIT/1492/B/


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63)
31-50
167-192


PVNS1_IATKR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/OREGON/71)
31-50


PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61)
28-47
164-189


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72)
31-50
167-192


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
31-50
114-137
167-192


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
31-50
114-137
167-192


PVNS1_IAZI1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
31-50
167-192


PVNS1_INCAA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/ANN ARBOR/1/50)
222-248


PVNS1_INCCA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
222-248


PVNS2_BTV10
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
145-161
201-223


PVNS2_BTV17
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
145-161
201-223


PVNS2_BTV1S
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
145-161




SOUTH AFRICA)


PVNS2_BTV1X
NONSTRUCTURAL PROTEIN NS2
BLUETONGUE VIRUS (SEROTYPE 10)
145-161


PVNS2_EHDV2
NONSTRUCTURAL PROTEIN NS2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE
145-161




2/STRAIN AL


PVNS2_IAPUE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
 3-28


PVNS2_IATRS
NONSTRUCTURAL PROTEIN NS2
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61)
56-80


PVNS2_PVM
NONSTRUCTURAL PROTEIN 2
PNEUMONIA VIRUS OF MICE
52-68


PVNS3_CVPFS
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
177-201




CORONAVIRUS (STRAI


PVNS3_CVPPU
NONSTRUCTURAL PROTEIN 3-1
PORCINE TRANSMISSIBLE GASTROENTERITIS
 98-122




CORONAVIRUS (STRAI


PVNS3_CVPRM
NONSTRUCTURAL PROTEIN 3-1
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
177-201


PVNS3_RSV
NONSTRUCTURAL PROTEIN NS3
RICE STRIPE VIRUS
16-40


PVNS4_CVH22
NONSTRUCTURAL PROTEIN 4
HUMAN CORONAVIRUS (STRAIN 229E)
 84-100


PVNS4_CVMS
NONSTRUCTURAL PROTEIN 4
MURINE CORONAVIRUS MHV (STRAIN S)
17-38


PVNS4_CVPFS
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE GASTROENTERITIS
 4-31




CORONAVIRUS (STRAI


PVNS4_CVPPU
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE GASTROENTERITIS
 4-31




CORONAVIRUS (STRAI


PVNS4_CVPRM
NONSTRUCTURAL PROTEIN 4
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4)
 4-31


PVNS4_MSTV
NONSTRUCTURAL PROTEIN NS4
MAIZE STRIPE VIRUS
41-56


PVNS4_RSV
NONSTRUCTURAL PROTEIN NS4
RICE STRIPE VIRUS
41-56
60-82
152-167


PVNS7_CVFE3
NONSTRUCTURAL PROTEIN 7
FELINE ENTERIC CORONAVIRUS (STRAIN 79-1683)
59-84


PVNS7_FIPV
NONSTRUCTURAL PROTEIN 7
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146)
59-84


PVNSC_PI1HB
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA A VIRUS (STRAIN C35)
76-92


PVNSC_PI1HC
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA A VIRUS (STRAIN C39)
76-92


PVNSC_PI1HD
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA A VIRUS (STRAIN CI-5/73)
76-92
179-197


PVNSC_PI1HE
NONSTRUCTURAL PROTEIN C
HUMAN PARAINFLUENZA A VIRUS (STRAIN CI-14/83)
76-92


PVNST_CVBQ
32 KD NONSTRUCTURAL PROTEIN
BOVINE CORONAVIRUS (STRAIN QUEBEC)
 88-109


PVNST_INCGL
NONSTRUCTURAL PROTEIN NS1-NS2
INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54)
222-248


PVNST_INCJH
NONSTRUCTURAL PROTEIN NS1-NS2
INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66)
222-248


PVNST_INCMI
NONSTRUCTURAL PROTEIN NS1-NS2
INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80)
222-248


PVNST_INCYA
NONSTRUCTURAL PROTEIN NS1-NS2
INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81)
222-248


PVNST_PTPV
NONSTRUCTURAL PROTEIN NS-S
PUNTA TORO PHLEBOVIRUS
48-63


PVNST_SFSV
NONSTRUCTURAL PROTEIN NS-S
SANDFLY FEVER SICILIAN VIRUS
16-34


PVNST_UUK
NONSTRUCTURAL PROTEIN NS-S
UUKUNIEMI VIRUS
52-73
 89-104


PVNUA_PRVKA
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS (STRAIN KAPLAN)
756-777
1563-






1583


PVNUC_DHVI1
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61)
123-139
297-324


PVNUC_EBOV
NUCLEOPROTEIN
EBOLA VIRUS
159-176


PVNUC_IAANA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANAS ACUTA/
173-197
266-287




PRIMORJE/695/76)


PVNUC_IAANN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
173-197


PVNUC_IABRA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BRAZIL/11/78)
173-197


PVNUC_IABUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/
173-197




HOKKAIDO/1/77)


PVNUC_IACAL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CALIFORNIA/10/78)
173-197


PVNUC_IACKG
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
173-197




GERMANY/N/49)


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CHICKEN/
173-197




PENNSYLVANIA/1/83)


PVNUC_IADAU
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/
173-197




AUSTRALIA/749/80


PVNUC_IADBE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/BEIJING/1/78)
173-197


PVNUC_IADCZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/
173-197




CZECHOSLOVAKIA/56)


PVNUC_IADE1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
173-197


PVNUC_IADE2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/62)
173-197


PVNUC_IADHK
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/HONG KONG/7/75)
173-197


PVNUC_IADM2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/MEMPHIS/928/74)
173-197


PVNUC_IADMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/MANITOBA/1/53)
173-197


PVNUC_IADNZ
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/
173-197




NEW ZEALAND/31/76)


PVNUC_IADU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/2/60)
173-197


PVNUC_IAEN5
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/ENGLAND/19/55)
173-197


PVNUC_IAFOM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
173-197


PVNUC_IAFOW
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
173-197


PVNUC_IAFPD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
173-197




DOBSON/DUTC


PVNUC_IAFPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/
173-197




ROSTOCK/34)


PVNUC_IAGRE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GREY TEAL/
173-197




AUSTRALIA/2/79)


PVNUC_IAGU1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/5/77)
173-197


PVNUC_IAGU2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/
173-197




704/77)


PVNUC_IAGU3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/
173-197




1824/78)


PVNUC_IAGU4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/
173-197




1815/79)


PVNUC_IAGUA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/
173-197




ASTRAKHAN/227/84)


PVNUC_IAGUM
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/
173-197




MASSACHUSETTS/26/80)


PVNUC_IAGUN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/GULL/
173-197




MINNESOTA/945/80)


PVNUC_IAHIC
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HICKOX/40)
173-197


PVNUC_IAHJI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/JILLIN/1/89)
173-197


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/LONDON/
173-197




1416/73)


PVNUC_IAHMI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/MIAMI/1/63)
173-197


PVNUC_IAHO1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG HONG/1/68)
173-197


PVNUC_IAHO2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/HONG KONG/5/83)
173-197


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/PRAGUE/1/56)
173-197


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE/TENNESSEE/5/86)
173-197


PVNUC_IAKIE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/KIEV/59/79)
173-197


PVNUC_IALEN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
173-197


PVNUC_IAMAA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MALLARD/
173-197




ASTRAKHAN/244/82)


PVNUC_IAMAN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MALLARD/
173-197




NEW YORK/6750/78)


PVNUC_IAMIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/MINK/SWEDEN/84)
173-197


PVNUC_IANT6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/NT/60/68)
173-197


PVNUC_IAOHI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/OHIO/4/83)
173-197


PVNUC_IAPAR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PARROT/ULSTER/73)
173-197


PVNUC_IAPUE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
173-197


PVNUC_IARUD
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/
173-197




NEW JERSEY/47/


PVNUC_IASE0
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SEAL/
173-197




MASSACHUSETTS/1/80)


PVNUC_IASH2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SHEARWATER/
173-197




AUSTRALIA/72)


PVNUC_IASIN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
173-197


PVNUC_IATEI
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEAL/ICELAND/29/80)
173-197


PVNUC_IATKN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/
173-197




MINNESOTA/166/81)


PVNUC_IATKO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TURKEY/
173-197




ONTARIO/7732/66)


PVNUC_IATRS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TERN/
173-197




SOUTH AFRICA/61)


PVNUC_IATRT
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TERN/
173-197




TURKMENIA/18/72)


PVNUC_IATX7
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/TEXAS/1/77)
173-197


PVNUC_IAUDO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
173-197


PVNUC_IAUSS
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
173-197


PVNUC_IAVI6
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/VICTORIA/5/68)
173-197


PVNUC_IAWHN
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/MAINE/328/84)
173-197


PVNUC_IAWHP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WHALE/PACIFIC
173-197




OCEAN/19/76)


PVNUC_IAWIL
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
173-197


PVNUC_IAZ29
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/29/37)
173-197


PVNUC_IAZ41
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/41/49)
173-197


PVNUC_IAZCA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/CAMBRIDGE/1/35)
173-197


PVNUC_IAZDA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/DANDONG/9/83)
173-197


PVNUC_IAZGE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/GERMANY/2/81)
173-197


PVNUC_IAZH1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/6/76)
173-197


PVNUC_IAZH3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/
173-197




126/82)


PVNUC_IAZI1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
173-197


PVNUC_IAZI2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/1976/31)
173-197


PVNUC_IAZI3
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/46)
173-197


PVNUC_IAZI4
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/ITALY/839/89)
173-197


PVNUC_IAZJA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/JAMESBURG/42)
173-197


PVNUC_IAZMA
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/MAY/54)
173-197


PVNUC_IAZNE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/
173-197




NETHERLANDS/12/85)


PVNUC_IAZOH
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/OHIO/23/35)
173-197


PVNUC_IAZW1
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/57)
173-197


PVNUC_IAZW2
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/WISCONSIN/1/61)
173-197


PVNUC_INBAC
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
234-258




[COLD-ADAPTED])


PVNUC_INBAD
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66
234-258




[WILD-TYPE])


PVNUC_INBLE
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/LEE/40)
234-258


PVNUC_INBSI
NUCLEOPROTEIN
INFLUENZA B VIRUS (STRAIN B/SINGAPORE/222/79)
234-258


PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
16-39
141-158


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
16-39
141-158


PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
189-204
242-262
336-358


PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
189-204
242-262
336-358


PVOR1_FXMV
152 KD PROTEIN
FOXTAIL MOSAIC VIRUS
846-865


PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS
409-424
 990-






1010


PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN)
 87-104
 986-
1251-
1893-






1009
1270
1909


PVOR1_PVSP
223 KD PROTEIN
POTATO VIRUS S (STRAIN PERUVIAN)
279-295


PVOR1_PVX
165 KD PROTEIN
POTATO VIRUS X
128-153
234-256
306-322
1010-








1030


PVOR1_PVXCP
165 KD PROTEIN
POTATO VIRUS X (STRAIN CP)
128-153
234-256
306-322
385-404
1010-









1030


PVOR1_PVXX3
165 KD PROTEIN
POTATO VIRUS X (STRAIN X3)
128-153
234-256
306-322
1010-








1030


PVOR1_SMYEA
150 KD PROTEIN
OS STRAWBERRY MILD YELLOW EDGE-ASSOCIATED
121-146
155-175




VIRUS


PVOR1_WCMVM
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)
121-146


PVOR1_WCMVO
147 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)
121-146
408-430


PVP03_HSVSA
PROBABLE MEMBRANE ANTIGEN 3
HERPESVIRUS SAIMIRI (STRAIN 11)
424-446
462-486
551-575
579-595
1051-









1072


PVP10_NPVAC
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 4-26
42-59




POLYHEDROSIS VIRUS


PVP10_NPVOP
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
 4-31




POLYHEDROSIS VIRUS


PVP10_NPVSE
P10 PROTEIN
SPODOPTERA EXIGUA NUCLEAR POLYHEDROSIS
35-58




VIRUS (STRAIN US)


PVP10_RBSDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS
31-49
52-77
105-129
195-214
260-283
504-528


PVP10_WTV
NONSTRUCTURAL PROTEIN PNS10
WOUND TUMOR VIRUS (WTV)
 90-107
265-291


PVP14_EBV
PROBABLE MEMBRANE ANTIGEN P140
EPSTEIN-BARR VIRUS (STRAIN B95-8)
694-715
857-879
1124-







1145


PVP19_EBV
PROD CAPSID ASSEMBLY AND DNA MATUR
EPSTEIN-BARR VIRUS (STRAIN B95-8)

346-364



PROTEI


PVP19_HCMVA
PROD CAPSID ASSEMBLY AND DNA MATUR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 77-101
122-149
200-216



PROTEI


PVP19_HSVSA
PROD CAPSID ASSEMBLY AND DNA MATUR
HERPESVIRUS SAIMIRI (STRAIN 11)
238-265



PROTEI


PVP19_VZVD
CAPSID ASSEMBLY AND DNA MATUR
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
 5-31



PROTEIN


PVP1_SSV1
STRUCTURAL PROTEIN VP1 PRECURSOR
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 8-35


PVP21_AMCV
CORE PROTEIN P21
ARTICHOKE MOTTLED CRINKLE VIRUS
37-63


PVP21_CNV
CORE PROTEIN P21
CUCUMBER NECROSIS VIRUS
40-65


PVP21_CRV
CORE PROTEIN P21
CYMBIDIUM RINGSPOT VIRUS
40-63


PVP21_TBSVC
CORE PROTEIN P21
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY)
40-63


PVP23_HCMVA
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
141-165
187-202
261-282


PVP23_HSVI1
CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
197-220


PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
206-232


PVP23_VZVD
PROBABLE CAPSID PROTEIN VP23
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
117-132


PVP26_NPVAC
P26 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
12-31
58-76
117-141




POLYHEDROSIS VIRUS


PVP2_AHSV4
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE
868-891
974-994




4/STRAIN VACCINE)


PVP2_BTV10
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
361-381
399-424
564-586
829-849


PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
361-381
399-424
829-849


PVP2_BTV13
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
362-382
420-438
617-632
657-676


PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
361-381


PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
420-438
654-681


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
14-31
113-140
420-438
654-681




SOUTH AFRICA)


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
153-168
229-252




(SEROTYPE 1)


PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
301-317
334-360
522-543
673-698
764-789


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
301-317
334-360
523-544
765-790


PVP2_ROTHW
RNA-BINDINO PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
309-325
342-363
532-553
674-700
774-799


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
51-75
303-319
408-425
514-535
665-691


PVP2_ROTS1
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
34-57
219-240
302-318
335-366
523-544
674-700
765-790


PVP30_MABVP
MINOR NUCLEOPROTEIN VP30
MARBURG VIRUS (STRAIN MUSOKE)
50-75


PVP32_ASFB7
PHOSPHOPROTEIN P32
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V)
174-197


PVP35_EBOV
POLYMERASE COMPLEX PROTEIN VP35
EBOLA VIRUS
233-256


PVP35_MABVM
POLYMERASE COMPLEX PROTEIN VP35
MARBURG VIRUS (STRAIN MUSOKE)
49-75
 78-104


PVP35_MABVP
POLYMERASE COMPLEX PROTEIN VP35
MARBURG VIRUS (STRAIN POPP)
49-75
 78-104


PVP35_VACCC
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN COPENHAGEN)
278-304



PROTEIN P35


PVP35_VACCV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN WR)
278-304



PROTEIN P35


PVP35_VARV
IMMUNODOMINANT ENVELOPE
VARIOLA VIRUS
279-305



PROTEIN P35


PVP38_HSVMG
38 KD PHOSPHOPROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN GA)
255-270


PVP38_HSVMN
38 KD PHOSPHOPROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN MD11/75C/R2)
255-270


PVP39_NPVAC
MAJOR CAPSID PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
296-311




POLYHEDROSIS VIRUS


PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
107-134
214-240
295-316




POLYHEDROSIS VIRUS


PVP3_AHSV4
VP3 CORE PROTEIN
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/
65-85
126-147
215-230
845-862




STRAIN VACCINE)


PVP3_BTV10
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
123-144
212-227


PVP3_BTV17
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
123-144
212-227


PVP3_BTV1A
VP3 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
123-144
212-227


PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1)
121-142
671-695


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE
121-142
675-695




2/STRAIN AUS


PVP3_RDV
MAJOR 114 KD STRUCTURAL PROTEIN
RICE DWARF VIRUS (RDV)
 89-108
340-360
367-393
690-717
742-768
748-768
960-975


PVP3_ROTPC
INNER CORE PROTEIN VP3
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
405-429


PVP3_ROTS1
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
401-425
426-444
512-536
796-822


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8)
429-454


PVP40_HSVI1
CAPSID PROTEIN P40
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
141-168
472-492


PVP40_HSVEB
CAPSID PROTEIN P40
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
50-67
 95-119
483-504


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11)
342-368


PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS
506-528




(STRAIN THORNE V882)


PVP40_MABVM
MATRIX PROTEIN VP40
MARBURG VIRUS (STRAIN MUSOKE)
 95-110


PVP40_MABVP
MATRIX PROTEIN VP40
MARBURG VIRUS (STRAIN POPP)
 95-110


PVP40_NPVBM
STRUCTURAL GLYCOPROTEIN P40
BOMBYX MORI NUCLEAR POLYHEDROSIS VIRUS
223-242
256-272


PVP40_VZVD
CAPSID PROTEIN VP24
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
47-64


PVP41_NPVAC
STRUCTURAL GLYCOPROTEIN GP41
AUTOGRAPHA CALIFORNICA NUCLEAR
229-248
262-278




POLYHEDROSIS VIRUS


PVP41_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
483-508


PVP42_ROTS1
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
395-411
483-508


PVP47_NPVAC
VIRAL TRANSCRIPTION REGULATOR P47
AUTOGRAPHA CALIFORNICA NUCLEAR
14-38




POLYHEDROSIS VIRUS


PVP48_NPVOP
P48 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
136-157




POLYHEDROSIS VIRUS


PVP4A_VARV
MAJOR CORE PROTEIN P4A PRECURSOR
VARIOLA VIRUS
273-288


PVP4B_VACCC
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
331-358


PVP4B_VACCV
MAJOR CORE PROTEIN P4B PRECURSOR
VACCINIA VIRUS (STRAIN WR)
331-358


PVP4B_VARV
MAJOR CORE PROTEIN P4B PRECURSOR
VARIOLA VIRUS
331-358


PVP4_BTV10
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
174-193
233-249
545-561


PVP4_BTV11
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
174-193
233-249
535-551


PVP4_BTV13
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
174-193
233-249
535-551


PVP4_BTV2A
VP4 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
174-193
233-249
535-551


PVP4_NCDV
OUTER CAPSID PROTEIN VP4
NEBRASKA CALF DIARRHEA VIRUS (STRAIN
483-508




NCDV-LINCOLN)


PVP4_RDV
NONSTRUCTURAL PROTEIN PNS4
RICE DWARF VIRUS
386-407
493-514
626-645


PVP4_ROTB4
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN B641)
483-508


PVP4_ROTBC
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN C486)
483-508


PVP4_ROTBU
OUTER CAPSID PROTEIN VP4
BOVINE ROTAVIRUS (STRAIN UK)
483-508


PVP4_ROTEH
OUTER CAPSID PROTEIN VP4
EQUINE ROTAVIRUS (STRAIN H-2)
226-250
483-508


PVP4_ROTH1
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
181-207
234-249
482-507


PVP4_ROTH5
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN RV-5)
181-207
234-249
482-507


PVP4_ROTH6
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 69M)
483-508


PVP4_ROTHD
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
181-207
234-249
482-507


PVP4_ROTHJ
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN K8)
483-508
524-548


PVP4_ROTHK
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN KU)
76-91
181-207
234-249
482-507


PVP4_ROTHL
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (STRAIN L26)
181-207
234-249
482-507


PVP4_ROTHM
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
181-207
234-249
482-507


PVP4_ROTHN
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN MCN13)
181-208
235-250
483-508


PVP4_ROTHP
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
181-207
234-249
482-507


PVP4_ROTHT
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST THOMAS 3)
181-207
234-249
482-507


PVP4_ROTHV
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70)
181-207
482-507


PVP4_ROTHW
OUTER CAPSID PROTEIN VP4
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
181-207
482-507


PVP4_ROTP5
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
235-250
483-508


PVP4_ROTPC
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
487-512


PVP4_ROTPG
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
234-249
482-507


PVP4_ROTPY
OUTER CAPSID PROTEIN VP4
PORCINE ROTAVIRUS (STRAIN YM)
235-250
483-508


PVP4_ROTRH
OUTER CAPSID PROTEIN VP4
RHESUS ROTAVIRUS
483-508


PVP4_ROTSF
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11-FEM)
483-508


PVP4_ROTSS
OUTER CAPSID PROTEIN VP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11-SEM)
395-411
483-508


PVP4_SBMV
P4 PROTEIN
SOUTHERN BEAN MOSAIC VIRUS
 90-114


PVP4_WTV
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS
192-215
416-438
498-519
564-591


PVP5_BTV10
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
295-317
326-345
494-517


PVP5_BTV11
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
295-317
326-345
494-517


PVP5_BTV13
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
295-317
494-517


PVP5_BTV1A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
 87-102
295-317


PVP5_BTV1S
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
295-317




SOUTH AFRICA)


PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
295-317


PVP5_RDV
OUTER COAT PROTEIN P5
RICE DWARF VIRUS
265-284
622-639
690-715


PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
 9-27
232-249
261-276


PVP61_NPVAC
61 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
321-337
438-462




POLYHEDROSIS VIRUS


PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
 5-23
257-272


PVP62_MRDV
PROB NONSTRUCTURAL 36 3 KD PROTEIN
MAIZE ROUGH DWARF VIRUS
130-146


PVP64_NPVOP
MAJOR ENV GLYCOPROTEIN PREC
ORGYIA PSEUDOTSUGATA MULTICAPSID
81-99
235-252
286-313




POLYHEDROSIS VIRUS


PVP67_NPVAC
MAJOR ENV GLYCOPROTEIN PREC
AUTOGRAPHA CALIFORNICA NUCLEAR
 84-102
238-255




POLYHEDROSIS VIRUS


PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR
155-172




POLYHEDROSIS VIRUS


PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
 5-23
228-245
257-272


PVP6_BTV13
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
 5-23
228-245
257-272


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
 5-23
228-245
257-272


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
 9-27
232-249
261-276




SOUTH AFRICA)


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
204-221
233-248


PVP6_WTV
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS
374-397


PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (STRAIN NJ)
374-397


PVP74_NPVAC
P74 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
254-275




POLYHEDROSIS VIRUS


PVP75_HSVSA
PROBABLE MEMBRANE ANTIGEN 75
HERPESVIRUS SAIMIRI (STRAIN 11)
127-147


PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
274-301
405-420
678-704




POLYHEDROSIS VIRUS


PVP7_BTV13
VP7 CORE PROTEIN
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
197-222


PVP7_EHDV1
VP7 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
205-222
301-323




(SEROTYPE 1)


PVP7_RDV
NONSTRUCTURAL PROTEIN PNS7
RICE DWARF VIRUS
400-416


PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS
262-285


PVP80_NPVAC
CAPSID PROTEIN P80
AUTOGRAPHA CALIFORNICA NUCLEAR
 98-123
638-660




POLYHEDROSIS VIRUS


PVP87_NPVOP
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID
571-593




POLYHEDROSIS VIRUS


PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
104-120


PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
104-120


PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
104-120


PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
104-120


PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
104-120


PVP8_BTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE
104-120




SOUTH AFRICA)


PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
104-120


PVP8_RDV
OUTER CAPSID PROTEIN P8 (
RICE DWARF VIRUS
374-400


PVP8_RGDV
OUTER CAPSID PROTEIN P8
RICE GALL DWARF VIRUS
177-202
216-242
398-425


PVP8_VACCC
STRUCTURAL PROTEIN VP8 PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
225-242


PVP8_VACCV
STRUCTURAL PROTEIN VP8 PRECURSOR
VACCINIA VIRUS (STRAIN WR)
225-242


PVP8_VARV
STRUCTURAL PROTEIN VP8 PRECURSOR
VARIOLA VIRUS
225-242


PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS
111-129
214-241
251-271
379-405


PVP9_RDV
NONSTRUCTURAL PROTEIN PNS9
RICE DWARF VIRUS
51-72


PVP9_RGDV
NONSTRUCTURAL PROTEIN S9
RICE GALL DWARF VIRUS
151-175


PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
145-166
225-245




POLYHEDROSIS VIRUS


PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
122-144




POLYHEDROSIS VIRUS


PVPRT_ADE12
ENDOPROTEASE
HUMAN ADENOVIRUS TYPE 12
161-181


PVPRT_MMTVB
PROTEASE
MOUSE MAMMARY TUMOR VIRUS (STRAIN BR6)
42-63


PVPRT_MPMV
PROTEASE
SIMIAN MASON-PFIZER VIRUS
80-99


PVPRT_SMRVH
PROTEASE
SQUIRREL MONKEY RETROVIRUS
256-271


PVPRT_SRV1
PROTEASE
SIMIAN RETROVIRUS SRV-1
80-99


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-27




(BH10 ISOLATE HXB3)


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-27




(BH8 ISOLATE)


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-28




(BRAIN ISOLATE)


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-27




(BRU ISOLATE)


PVPU_HV1EL
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-26




(ELI ISOLATE)


PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 4-27




(HXB2 ISOLATE)


PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-28




(JRCSF ISOLATE)


PVPU_HV1MA
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 2-27




(MAL ISOLATE)


PVPU_HV1MN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-20




(MN ISOLATE)


PVPU_HV1ND
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-28




(NDK ISOLATE)


PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-27




(PV22 ISOLATE)


PVPU_HY1S1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-28




(SF162 ISOLATE)


PVPU_HV1SC
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-28




(SC ISOLATE)


PVPU_HV1Z2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
 3-28




(Z2/CDC-Z34 ISOLATE)


PVPU_JSRV
VPU PROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
24-25




(JAAGSIEKTE SHEEP RET


PVPX_HV2BE
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE BEN)


PVPX_HV2CA
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE CAM2)


PVPX_HV2D1
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE D194)


PVPX_HV2D2
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
 9-31




(ISOLATE D205, 7)


PVPX_HV2G1
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE GHANA-1)


PVPX_HV2NZ
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE NIH-Z)


PVPX_HV2RO
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE ROD)


PVPX_HV2SB
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE SBLISY)


PVPX_HV2ST
VPX PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2
10-32




(ISOLATE ST)


PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS
145-165


PVPX_SIVAI
VPX PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE AGM/
66-84




CLONE GRI-1) (S


PVPX_SIVMI
VPX PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
10-32




(MM142-83 ISOLATE) (SIV-MAC)


PVPX_SIVMK
VPX PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
10-32




(K6W ISOLATE) (SIV-MAC)


PVPX_SIVML
VPX PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
10-32




(K78 ISOLATE) (SIV-MAC)


PVPX_SIVS4
VPX PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
10-32




(F236/SMH4 ISOLATE) (SOOTY M


PVPX_SIVSP
VPX PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS
10-32




(PBJ/BC13 ISOLATE) (SOOTY MA


PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
290-312
904-929


PVS05_ROTBR
NONSTRUCTURAL PROTEIN NCVP2
BOVINE ROTAVIRUS (STRAIN RF)
140-157
461-487


PYS05_ROTHI
NONSTRUCTURAL PROTEIN NCVP2
HUMAN ROTAVIRUS (STRAIN IGV-80-3)
140-157
428-450
457-473


PVS05_ROTPC
NONSTRUCTURAL PROTEIN NS53
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
 88-112


PVS05_ROTS1
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
399-414


PVS06_ROTBR
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN RE)
202-225


PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
64-85


PVS06_ROTBU
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
202-225


PVS06_ROTEF
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN FI-14)
202-225


PVS06_ROTEH
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN H-2)
202-225


PVS06_ROTGA
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV) (ADULT
22-40




DIARRHEA ROTAVIRU


PVS06_ROTGI
VP6 PROTEIN
ROTAVIRUS (GROUP B/STRAIN IDIR)
22-40


PVS06_ROTHI
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
202-225


PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL)
64-85


PVS06_ROTHS
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
202-225


PVS06_ROTHW
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
202-225


PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
64-85
314-340


PVS06_ROTPG
VP6 PROTEIN
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
202-225


PVS07_ROTBJ
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KN-4)
131-155


PVS08_ROTPC
GLYCOPROTEIN VP7 PRECURSOR
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
117-136


PYS08_ROTS1
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
274-295


PVS09_ROTB6
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 6/STRAIN 61A)
131-155


PVS09_ROTBA
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN A44)
131-155


PVS09_ROTBB
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 10/STRAIN B223)
131-155


PVS09_ROTBK
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (STRAIN KK3)
131-155


PVS09_ROTBT
GLYCOPROTEIN VP7
BOVINE ROTAVIRUS (SEROTYPE 1/STRAIN T449)
131-155


PVS09_ROTC7
GLYCOPROTEIN VP7
CHICKEN ROTAVIRUS A (SEROTYPE 7/STRAIN CH2)
134-158


PVS09_ROTEL
GLYCOPROTEIN VP7
EQUINE ROTAVIRUS (STRAIN L338)
131-155


PVS09_ROTGI
GLYCOPROTEIN VP7 PRECURSOR
ROTAVIRUS (GROUP B/STRAIN IDIR)
205-232


PVS09_ROTH4
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN RV-4)
131-155
197-212


PVS09_ROTHA
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HU5)
197-212


PVS09_ROTHD
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN DS1)
197-212


PVS09_ROTHH
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN HN126)
197-212


PVS09_ROTHL
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (STRAIN L26)
131-155
197-212


PVS09_ROTHM
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN M37)
131-155
197-212


PVS09_ROTHO
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN MO AND
131-155
197-212




STRAIN D)


PVS09_ROTHP
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN P)
131-155


PVS09_ROTHR
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 3/STRAIN RRV)
131-155


PVS09_ROTHS
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
197-212


PVS09_ROTHV
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN VA70)
197-212


PVS09_ROTHW
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
131-155
197-212


PVS09_ROTP5
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN OSU)
131-155
197-212


PVS09_ROTP6
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 5/STRAIN TFR-41)
131-155


PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BEN-144)
197-212


PVS09_ROTPM
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BMI-1)
197-212


PVS09_ROTRH
GLYCOPROTEIN VP7
RHESUS ROTAVIRUS
131-155


PVS09_ROTS1
GLYCOPROTEIN VP7
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
131-155


PVS11_ROTGA
NONSTRUCTURAL PROTEIN
ROTAVIRUS (GROUP B/STRAIN ADRV)
136-153




(ADULT DIARRHEA ROTAVIRU


PVSH_HRSVA
SMALL HYDROPHOBIC PROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
16-41


PVSH_MUMP1
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN SBL-1), AND
 7-29




MUMPS VIRUS (STRAIN SBL)


PVSH_MUMP2
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 2 &6)
 7-29


PVSH_MUMP4
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN EDINGBURGH 4)
 7-29


PVSH_MUMPA
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MATSUYAMA)
10-29


PVSH_MUMPB
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BELFAST)
 7-29


PVSH_MUMPE
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN ENDERS)
 7-29


PVSH_MUMPJ
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN JERYL-LYNN)
 7-29


PVSH_MUMPK
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN KILHAM)
 7-29


PVSH_MUMPL
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN BRISTOL 1)
 6-29


PVSH_MUMPM
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
10-29


PVSH_MUMPR
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN RW)
 7-29


PVSH_MUMPT
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN TAKAHASHI)
10-29


PVSH_MUMPU
SMALL HYDROPHOBIC PROTEIN
MUMPS VIRUS (STRAIN URABE VACCINE AM9)
10-29


PVS11_REOVL
SIGMA 1 PROTEIN PRECUSOR
REOVIRUS (TYPE 1/STRAIN LANG)
110-136


PVS13_REOVD
SIGMA 3 PROTEIN
REOVIRUS (TYPE 3/STRAIN DEARING)
152-170


PVS13_REOVJ
SIGMA 3 PROTEIN
REOVIRUS (TYPE 2/STRAIN D5/JONES)
152-170


PVS13_REOVL
SIGMA 3 PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
152-170


PVSIS_REOVL
SIGMA 1-S PROTEIN
REOVIRUS (TYPE 1/STRAIN LANG)
 79-101


PVST2_HEVBU
STRUCTURAL PROTEIN 2 PRECUSOR
HEPATITIS E VIRUS (STRAIN BURMA)
292-311


PVST2_HEVME
STRUCTURAL PROTEIN 2 PRECUSOR
HEPATITIS E VIRUS (STRAIN MEXICO)
292-311


PVST2_HEVMY
STRUCTURAL PROTEIN 2 PRECUSOR
HEPATITIS E VIRUS (STRAIN MYANMAR)
292-311


PVST2_HEPVA
STRUCTURAL PROTEIN 2 PRECUSOR
HEPATITIS E VIRUS (STRAIN PAKISTAN)
292-311


PVST2_HEVRH
STRUCTURAL PROTEIN 2
HEPATITIS E VIRUS (STRAIN RHESUS)
160-179


PVT2_MYXVL
TUMOR NECROSIS FACTOR SOL
MYXOMA VIRUS (STRAIN LAUSANNE)
261-283



RECEPTOR PREC


PVT2_SFVKA
TUMOR NECROSIS FACTOR SOL
SHOPE FIBROMA VIRUS (STRAIN KASZA)
270-289



RECEPTOR PREC


PVT3A_CAPVI
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
116-138


PVT4_SFVKA
T4 PROTEIN
SHOPE FIBROMA VIRUS (STRAIN KASZA)
125-148


PVTER_EBV
PROBABLE DNA PACKAGING PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
117-139
166-192
227-250


PVTER_HCMVA
PROBABLE DNA PACKAGING PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
409-430


PVTER_HSVI1
PROBABLE DNA PACKAGING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
363-380
673-688


PVTER_HSV6U
PROBABLE DNA PACKAGING PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN
260-278




UGANDA-1102)


PVTER_HSVEB
PROBABLE DNA PACKAGING PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)
364-381


PVTER_HSVI1
PROBABLE DNA PACKAGING PROTEIN
ICTALURID HERPESVIRUS 1
309-333
756-781


PVTER_HSVSA
PROBABLE DNA PACKAGING PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
218-214


PVTER_VZVD
PROBABLE DNA PACKAGING PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS)
372-389


PX_HPBGS
PROTEIN X
GROUND SQUIRREL HEPATITIS VIRUS
68-85


PX_WHV1
PROTEIN X
WOODCHUCK HEPATITIS VIRUS 1
68-85


PX_WHV59
PROTEIN X
WOODCHUCK HEPATITIS VIRUS 59
68-85


PX_WHV7
PROTEIN X
WOODCHUCK HEPATITIS VIRUS 7
68-85


PX_WHV8
PROTEIN X
WOODCHUCK HEPATITIS VIRUS 8
68-85


PX_WHV8I
PROTEIN X
WOODCHUCK HEPATITIS VIRUS 8
68-85




(INFECTIOUS CLONE)


PX_WHVW6
PROTEIN X
WOODCHUCK HEPATITIS VIRUS W64
68-85




(ISOLATE PWS23)


PY104_ADE07
HYPOTHETICAl 10 4 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
55-73


PY108_SSV1
HYPOTHETICAL 10 8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
66-90


PY10K_MSVS
HYPOTHETICAL 10 9 KD PROTEIN
MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE)
24-47


PY118_SSV1
HYPOTHETICAL 11 8 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
42-59


PY11K_PASV
HYPOTHETICAL 11 9 KD PROTEIN
PANICUM STREAK VIRUS
29-52


PY12K_BNYVG
RNA-3 HYPOTHETICAL 11 6 KD PROTEIN
BEET NECROTIC YELLOW VEIN MOSAIC VIRUS
15-42




(ISOLATE G1)


PY12K_CMVSI
HYPOTHETICAL 12 4 KD PROTEIN
CYMBIDIUM MOSAIC VIRUS (STRAIN SINGAPORE)
 8-30


PY137_ADE02
HYPOTHETICAL PROTEIN B-137
HUMAN ADENOVIRUS TYPE 2
28-50


PY13K_CLVK
HYPOTHETICAL 13 1 KD PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
34-55


PY13K_CLVN
HYPOTHETICAL 13 1 KD PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
34-55


PY13K_TYLCM
HYPOTHETICAL 13 3 KD PROTEIN
TOMATO YELLOW LEAF CURL VIRUS (STRAIN
10-27




MARMANDE)


PY13K_TYLCV
HYPOTHETICAL 13 4 KD PROTEIN
TOMATO YELLOW LEAF CURL VIRUS
34-55


PY145_ADE07
HYPOTHETICAL 14 5 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
108-132


PY14K_CSMV
HYPOTHETICAL 14 5 KD PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
54-80


PY18K_SSV1
HYPOTHETICAL 18 0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
100-125
141-162


PY206_ADE07
HYPOTHETICAL 20 6 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
50-73


PY25K_BNYVF
RNA-3 HYPOTHETICAL 24 7 KD PROTEIN
BEET NECROTIC YELLOW VEIN MOSAIC VIRUS
163-188




(ISOLATE F2)


PY29K_NPVAC
HYPOTHETICAL 29 9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 90-106




POLYHEDROSIS VIRUS


PY2_SOCMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
65-90


PY32K_SSV1
HYPOTHETICAL 31 7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
122-142


PY6K0_SSV1
HYPOTHETICAL 6 0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
23-44


PY7K4_VACCV
HYPOTHETICAL 7 4 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
21-36


PY7K_MEASH
HYPOTHETICAL 7 KD PROTEIN
MEASLES VIRUS (STRAIN HALLE)
 3-25


PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
 96-120


PY85K_SSV1
HYPOTHETICAL 85 7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 80-105
155-173
543-565
657-675
764-784


PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
10-27


PY97_ADE07
HYPOTHETICAL 9 7 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
54-77


PY9K2_SSV1
HYPOTHETICAL 9 2 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
16-41
62-77


PYAL1_EBV
HYPOTHETICAL BALF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
205-220


PYB01_FOWPM
HYPOTHETICAL BAMHI-ORF1 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
354-374


PYB07_FOWPM
HYPOTHETICAL BAMHI-ORF7 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
104-121


PYB09_FOWPM
HYPOTHETICAL BAMHI-ORF9 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
49-67


PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF10 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
 84-100


PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF12 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
114-134
154-169


PYBL2_SFV3L
BEL-2 PROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
113-128


PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
52-78


PYDH1_HSVSC
HYP 28 7 KD PROTEIN IN DHFR 3′REGION
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
206-230


PYDH3_HSVSC
HYP 9 5 KD PROTEIN IN DHFR 3′REGION
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
69-90


PYEC4_EBV
HYPOTHETICAL EC-RF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
200-222


PYGA1_HSVMB
HYPOTHETICAL 23 6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1)
175-190


PYGA1_HSVMM
HYPOTHETICAL 23 6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN MD5)
175-190


PYHL4_HCMVA
HYPOTHETICAL PROTEIN HHLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
101-121


PYHR3_VACCV
HYP HOST RANGE 27 4 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
 86-102


PYIO2_CVMA5
HYP PROTEIN IN NUCLEOCAPSID ORF
MURINE CORONAVIRUS MHV
141-156


PYIOR_CVM1
HYP PROTEIN IN NUCLEOCAPSID ORF
MURINE CORONAVIRUS MHV
141-156


PYIOR_CVMS
HYP PROTEIN IN NUCLEOCAPSID ORF
MURINE CORONAVIRUS MHV
 7-33


PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
67-90


PYL12_ADE41
HYPOTHETICAL 8 0 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
53-73


PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 76-100
128-155
215-241
330-350


PYMSP_IRV22
HYPOTHETICAL 15 9 KD PROTEIN
SIMULIUM IRIDESCENT VIRUS (INSECT IRIDESCENT
23-46




VIRUS TYPE 22)


PYOR1_ADEG1
HYPOTHETICAL PROTEIN
AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)
59-80




(FOWL ADENOVIRUS 1)


PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
56-83


PYOR1_TTV1
HYPOTHETICAL 7 9 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
13-40


PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
23-49


PYOR2_EAV
HYPOTHETICAL 25 6 KD PROTEIN
EQUINE ARTERITIS VIRUS
165-192


PYOR2_LELV
HYPOTHETICAL 28 4 KD PROTEIN
LELYSTAD VIRUS
196-212


PYOR3_LVX
HYPOTHETICAL 11 8 KD PROTEIN
LILY VIRUS X
71-92


PYOR3_NMV
HYPOTHETICAL 14 KD PROTEIN
NARCISSUS MOSAIC VIRUS
 7-30


PYOR3_PVX
HYPOTHETICAL 12 KD PROTEIN
POTATO VIRUS X
11-34


PYOR3_PVXCP
HYPOTHETICAL 12 KD PROTEIN
POTATO VIRUS X (STRAIN CP)
11-34


PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)
 9-29


PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)
 9-31


PYOR5_ADEG1
HYPOTHETICAL 31 5 KD PROTEIN
AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)
69-86




(FOWL ADENOVIRUS 1)


PYOR5_EAV
HYPOTHETICAL 28 7 KD PROTEIN
EQUINE ARTERITIS VIRUS
139-158


PYOR6_NMV
HYPOTHETICAL 10 KD PROTEIN
NARCISSUS MOSAIC VIRUS
10-26


PYORI_TTV1
HYPOTHETICAL 16 6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
13-32


PYORL_TTV1
HYPOTHETICAL 16 5 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
16-39


PYORM_TTV1
HYPOTHETICAL 38 6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
 82-102
233-256


PYORP_TTV1
HYPOTHETICAL 20 2 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
 91-115


PYP24_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 2-25
104-126


PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 2-25
104-126




(ISOLATE PHILIPPINES)


PYP47_NPVAC
HYPOTHETICAL 43 5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
211-234




POLYHEDROSIS VIRUS


PYP62_NPVOP
HYPOTHETICAL 12 2 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
 82-108




POLYHEDROSIS VIRUS (OP


PYP63_NPVOP
HYPOTHETICAL 40 0 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
27-54
215-230




POLYHEDROSIS VIRUS (OP


PYP7B_TNVD
HYPOTHETICAL P7B PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN D) (TNV)
13-31


PYPO4_NPVLD
HYPOTHETICAL 8 5 KD PROTEIN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
16-35




POLYHEDROSIS VIRUS


PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
42-66


PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
55-74


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
32-56


PYRP1_IRV6
REPETITIVE PROTEIN ORF1
CHILO IRIDESCENT VIRUS (CIV) (INSECT
20-43




IRIDESCENT VIRUS TYPE 6)


PYRP4_IRV6
REPETITIVE PROTEIN ORF4
CHILO IRIDESCENT VIRUS (CIV) (INSECT
44-69




IRIDESCENT VIRUS TYPE 6)


PYRP5_IRV6
REPETITIVE PROTEIN ORF5
CHILO IRIDESCENT VIRUS (CIV) (INSECT
 98-123
179-204
260-285




IRIDESCENT VIRUS TYPE 6)


PYRR1_EBV
HYPOTHETICAL BRRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
199-223


PYRR2_EBV
HYPOTHETICAL BRRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
164-182


PYSR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 92-113


PYTR1_EBV
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
383-401


PYUB2_NPVOP
HYPOTHETICAL 24 0 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
133-152




POLYHEDROSIS VIRUS (OP


PYVAE_VACCC
HYPOTHETICAL 18 2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
82-99
140-156


PYVAF_VACCC
HYPOTHETICAL 8 4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
17-40
51-68


PYVAL_VACCV
HYPOTHETICAL 9 9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
21-43




VACCINIA VIRUS (STRAIN COPE


PYVAT_VACCV
HYPOTHETICAL 8 9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
28-46




VACCINIA VIRUS (STRAIN COPE


PYVBE_VACCV
HYPOTHETICAL 10 5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
 9-28




VACCINIA VIRUS (STRAIN COPE


PYVBG_VACCC
HYPOTHETICAL 11 2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-54


PYVCA_VACCC
HYPOTHETICAL 8 0 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
18-35


PYVD2_VACCV
HYPOTHETICAL 8 6 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
 5-26
36-52




VACCINIA VIRUS (STRAIN COPE


PYVDA_VACCC
HYPOTHETICAL 9 2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-38
44-64


PYVDA_VACCV
HYPOTHETICAL 9 2 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
 3-28
22-38
44-64


PYVFA_VACCC
HYPOTHETICAL 7 1 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-67


PYVFF_VACCC
HYPOTHETICAL 8 8 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-42


PYVGA_VACCC
HYPOTHETICAL 14 3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
105-127


PYVKB_VACCC
HYPOTHETICAL 9 0 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-70


PYZL2_EBV
HYPOTHETICAL BZLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-166


PY14K_CSMV
HYPOTHETICAL 14 5 KD PROTEIN
CHLORIS STRIATE MOSAIC VIRUS
54-80


PY18K_SSV1
HYPOTHETICAL 18 0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
100-125
141-162


PY206_ADE07
HYPOTHETICAL 20 6 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
50-73


PY25K_BNYVF
RNA-3 HYPOTHETICAL 24 7 KD PROTEIN
BEET NECROTIC YELLOW VEIN MOSAIC VIRUS
163-188




(ISOLATE F2)


PY29K_NPVAC
HYPOTHETICAL 29 9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR
 90-106




POLYHEDROSIS VIRUS


PY2_SOCMV
HYPOTHETICAL PROTEIN 2
SOYBEAN CHLOROTIC MOTTLE VIRUS
65-90


PY32K_SSV1
HYPOTHETICAL 31 7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
122-142


PY6K0_SSV1
HYPOTHETICAL 6 0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
23-44


PY7K4_VACCV
HYPOTHETICAL 7 4 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
21-36


PY7K_MEASH
HYPOTHETICAL 7 KD PROTEIN
MEASLES VIRUS (STRAIN HALLE)
 3-25


PY7_SOCMV
HYPOTHETICAL PROTEIN 7
SOYBEAN CHLOROTIC MOTTLE VIRUS
 96-120


PY85K_SSV1
HYPOTHETICAL 85 7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
 80-105
155-173
543-565
657-675
764-784


PY8_SOCMV
HYPOTHETICAL PROTEIN 8
SOYBEAN CHLOROTIC MOTTLE VIRUS
10-27


PY97_ADE07
HYPOTHETICAL 9 7 KD EARLY PROTEIN
HUMAN ADENOVIRUS TYPE 7
54-77


PY9K2_SSV1
HYPOTHETICAL 9 2 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
16-41
62-77


PYAL1_EBV
HYPOTHETICAL BALF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
205-220


PYB01_FOWPM
HYPOTHETICAL BAMHI-ORF1 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
354-374


PYB07_FOWPM
HYPOTHETICAL BAMHI-ORF7 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
104-121


PYB09_FOWPM
HYPOTHETICAL BAMHI-ORF9 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
49-67


PYB10_FOWPM
HYPOTHETICAL BAMHI-ORF10 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
 84-100


PYB12_FOWPM
HYPOTHETICAL BAMHI-ORF12 PROTEIN
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
114-134
154-169


PYBL2_SFV3L
BEL-2 PROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3)
113-128


PYBL3_FOAMV
BEL-3 PROTEIN
HUMAN SPUMARETROVIRUS
52-78


PYDH1_HSVSC
HYPOTHETICAL 28 7 KD PROTEIN IN DHFR
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
206-230



3′REGIO


PYDH3_HSVSC
HYPOTHETICAL 9 5 KD PROTEIN IN DHFR
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
69-90



3′REGION


PYEC4_EBV
HYPOTHETICAL EC-RF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
200-222


PYGA1_HSVMB
HYPOTHETICAL 23 6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN BC-1)
175-190


PYGA1_HSVMM
HYPOTHETICAL 23 6 KD PROTEIN
MAREK'S DISEASE HERPESVIRUS (STRAIN MD5)
175-190


PYHL4_HCMVA
HYPOTHETICAL PROTEIN HHLF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
101-121


PYHR3_VACCV
HYPOTHETICAL HOST RANGE 27 4 KD
VACCINIA VIRUS (STRAIN WR)
 86-102



PROTEIN


PYIO2_CVMA5
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
141-156



NUCLEOCAPSID ORF


PYIOR_CVM1
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
141-156



NUCLEOCAPSID ORF


PYIOR_CVMS
HYPOTHETICAL PROTEIN IN
MURINE CORONAVIRUS MHV
 7-33



NUCLEOCAPSID ORF


PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
67-90


PYL12_ADE41
HYPOTHETICAL 8 0 KD PROTEIN
HUMAN ADENOVIRUS TYPE 41
53-73


PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 76-100
128-155
215-241
330-350


PYMSP_IRV22
HYPOTHETICAL 15 9 KD PROTEIN
SIMULIUM IRIDESCENT VIRUS (INSECT
23-46




IRIDESCENT VIRUS TYPE 22)


PYOR1_ADEG1
HYPOTHETICAL PROTEIN
AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)
59-80




(FOWL ADENOVIRUS 1)


PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
56-83


PYOR1_TTV1
HYPOTHETICAL 7 9 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
13-40


PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS
23-49


PYOR2_EAV
HYPOTHETICAL 25 6 KD PROTEIN
EQUINE ARTERITIS VIRUS
165-192


PYOR2_LELV
HYPOTHETICAL 28 4 KD PROTEIN
LELYSTAD VIRUS
196-212


PYOR3_LVX
HYPOTHETICAL 11 8 KD PROTEIN
LILY VIRUS X
71-92


PYOR3_NMV
HYPOTHETICAL 14 KD PROTEIN
NARCISSUS MOSAIC VIRUS
 7-30


PYOR3_PVX
HYPOTHETICAL 12 KD PROTEIN
POTATO VIRUS X
11-34


PYOR3_PVXCP
HYPOTHETICAL 12 KD PROTEIN
POTATO VIRUS X (STRAIN CP)
11-34


PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M)
 9-29


PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O)
 9-31


PYOR5_ADEG1
HYPOTHETICAL 31 5 KD PROTEIN
AVIAN ADENOVIRUS GAL1 (STRAIN PHELPS)
69-86




(FOWL ADENOVIRUS 1)


PYOR5_EAV
HYPOTHETICAL 28 7 KD PROTEIN
EQUINE ARTERITIS VIRUS
139-158


PYOR6_NMV
HYPOTHETICAL 10 KD PROTEIN
NARCISSUS MOSAIC VIRUS
10-26


PYORI_TTV1
HYPOTHETICAL 16 6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
13-32


PYORL_TTV1
HYPOTHETICAL 16 5 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
16-39


PYORM_TTV1
HYPOTHETICAL 38 6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
 82-102
233-256


PYORP_TTV1
HYPOTHETICAL 20 2 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1)
 91-115


PYP24_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS
 2-25
104-126


PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE
 2-25
104-126




PHILIPPINES)


PYP47_NPVAC
HYPOTHETICAL 43 5 KD PROTEIN IN
AUTOGRAPHA CALIFORNICA NUCLEAR
211-234



P47 3′REGION
POLYHEDROSIS VIRUS


PYP62_NPVOP
HYPOTHETICAL 12 2 KD PROTEIN IN
ORGYIA PSEUDOTSUGATA MULTICAPSID
 82-108



P6 5 5′REGION
POLYHEDROSIS VIRUS (OP


PYP63_NPVOP
HYPOTHETICAL 40 0 KD PROTEIN IN
ORGYIA PSEUDOTSUGATA MULTICAPSID
27-54
215-230



P6 5 5′REGION
POLYHEDROSIS VIRUS (OP


PYP7B_TNVD
HYPOTHETICAL P78 PROTEIN
TOBACCO NECROSIS VIRUS (STRAIN D) (TNV)
13-31


PYPO4_NPVLD
HYPOTHETICAL 8 5 KD PROTEIN IN
LYMANTRIA DISPAR MULTICAPSID NUCLEAR
16-35



POL 3′REGION
POLYHEDROSIS VIRUS


PYRF1_HSV6G
HYPOTHETICAL PROTEIN RF1
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
42-66


PYRF2_HSV6G
HYPOTHETICAL PROTEIN RF2
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
55-74


PYRF3_HSV6G
HYPOTHETICAL PROTEIN RF3
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
32-56


PYRP1_IRV6
REPETITIVE PROTEIN ORF1
CHILO IRIDESCENT VIRUS (CIV) (INSECT
20-43




IRIDESCENT VIRUS TYPE 6)


PYRP4_IRV6
REPETITIVE PROTEIN ORF4
CHILO IRIDESCENT VIRUS (CIV) (INSECT
44-69




IRIDESCENT VIRUS TYPE 6)


PYRP5_IRV6
REPETITIVE PROTEIN ORF5
CHILO IRIDESCENT VIRUS (CIV) (INSECT
 91-123
179-204
260-285




IRIDESCENT VIRUS TYPE 6)


PYRR1_EBV
HYPOTHETICAL BRRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
199-223


PYRR2_EBV
HYPOTHETICAL BRRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
164-182


PYSR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
 92-113


PYTR1_EBV
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
383-401


PYUB2_NPVOP
HYPOTHETICAL 24 0 KD PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID
133-152




POLYHEDROSIS VIRUS (OP


PYVAE_VACCC
HYPOTHETICAL 18 2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
82-99
140-156


PYVAF_VACCC
HYPOTHETICAL 8 4 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
17-40
51-68


PYVAL_VACCV
HYPOTHETICAL 9 9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
21-43




VACCINIA VIRUS (STRAIN COPE


PYVAT_VACCV
HYPOTHETICAL 8 9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
28-46




VACCINIA VIRUS (STRAIN COPE


PYVBE_VACCV
HYPOTHETICAL 10 5 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
 9-28




VACCINIA VIRUS (STRAIN COPE


PYVBG_VACCC
HYPOTHETICAL 11 2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
37-54


PYVCA_VACCC
HYPOTHETICAL 8 0 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
18-35


PYVD2_VACCV
HYPOTHETICAL 8 6 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND
 5-26
36-52




VACCINIA VIRUS (STRAIN COPE


PYVDA_VACCC
HYPOTHETICAL 9 2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-38
44-64


PYVDA_VACCV
HYPOTHETICAL 9 2 KD PROTEIN
VACCINIA VIRUS (STRAIN WR)
 3-18
22-38
44-64


PYVFA_VACCC
HYPOTHETICAL 7 1 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
48-67


PYVFF_VACCC
HYPOTHETICAL 8 8 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
23-42


PYVGA_VACCC
HYPOTHETICAL 14 3 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
105-127


PYVKB_VACCC
HYPOTHETICAL 9 0 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-70


PYZL2_EBV
HYPOTHETICAL BZLF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8)
150-166
















TABLE XIV







SEARCH RESULTS SUMMARY FOR P23TLZIPC MOTIF
















PCGENE
P23CTLZIP
All Viruses (no bacteriophages)


AREA
AREA
AREA
AREA
AREA


FILE NAME
PROTEIN
VIRUS
AREA 1
AREA 2
3
4
5
6
7





PPOL2_TBRVS
RNA2 POLYPROTEIN
TOMATO BLACK RING VIRUS (STRAIN S) (TBRV)
617-651
1041-1077







PPOL2_TRSVR
RNA2 POLYPROTEIN
TOMATO RINGSPOT VIRUS (ISOLATE RASPBERRY) (TOMRSV)
316-347


PPOLG_BOVEV
GENOME POLYPROTEIN
BOVINE ENTEROVIRUS (STRAIN VG-5-27) (BEV)
1833-1866
2001-2037


PPOLG_BVDVN
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (ISOLATE NADL)
102-135
1650-1678
3220-







3248


PPOLG_BVDVS
GENOME POLYPROTEIN
BOVINE VIRAL DIARRHEA VIRUS (STRAIN SD-1)
102-135
1560-1588
3130-







3158


PPOLG_BYMV
GENOME POLYPROTEIN
BEAN YELLOW MOSAIC VIRUS
226-255


PPOLG_COXA2
GENOME POLYPROTEIN
COXSACKIEVIRUS A21 (STRAIN COE)
1120-1157


PPOLG_COXA3
GENOME POLYPROTEIN
COXSACKIEVIRUS A23 (ECHO 9 VIRUS) (EC-9-V)
67-99


PPOLG_COXA9
GENOME POLYPROTEIN
COXSACKIEVIRUS A9 (STRAIN GRIGGS)
1601-1633


PPOLG_COXB1
GENOME POLYPROTEIN
COXSACKIEVIRUS B1
1582-1614


PPOLG_COXB3
GENOME POLYPROTEIN
COXSACKIEVIRUS B3
1585-1617


PPOLG_COXB4
GENOME POLYPROTEIN
COXSACKIEVIRUS B4
1583-1615


PPOLG_COXB5
GENOME POLYPROTEIN
COXSACKIEVIRUS B5
835-868
1585-1617


PPOLG_DEN1S
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN SINGAPORE S275/90)
1111-1145
1485-1519
2401-







2434


PPOLG_DEN1W
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 1 (STRAIN WESTERN PACIFIC)
1112-1146


PPOLG_DEN26
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681)
61-95
1112-1146


PPOLG_DEN27
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN 16681-PDK53)
61-95
1112-1146


PPOLG_DEN2D
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN D2-04)
61-95


PPOLG_DEN2J
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN JAMAICA)
61-95
1112-1146


PPOLG_DEN2N
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN NEW GUINEA C)
364-398


PPOLG_DEN2P
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN PR159/S1)
61-95
1112-1146


PPOLG_DEN2T
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 2 (STRAIN TONGA 1974
832-866


PPOLG_DEN3
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 3
61-95
2399-2432


PPOLG_DEN4
GENOME POLYPROTEIN
DENGUE VIRUS TYPE 4
60-94


PPOLG_ECIIG
GENOME POLYPROTEIN
ECHOVIRUS II (STRAIN GREGORY)
774-806


PPOLG_EMCV
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS
1194-1226
1463-1501


PPOLG_EMCVB
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-B NONDIABETOGENIC)
1196-1228
1465-1503


PPOLG_EMCVD
GENOME POLYPROTEIN
ENCEPHALOMYOCARDITIS VIRUS (STRAIN EMC-D DIABETOGENIC)
1196-1228
1465-1503


PPOLG_FMDV1
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A10-61) (APHTHOVIRUS A)
1036-1064
1098-1133
1167-
1465-







1199
1501


PPOLG_FMDVA
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAIN A12) (APHTHOVIRUS A)
1036-1074
1098-1133
1167-
1465-







1199
1501


PPOLG_FMDVO
GENOME POLYPROTEIN
FOOT-AND-MOUTH DISEASE VIRUS (STRAINS O1K AND O1BFS)
1098-1133
1167-1199
1465-







1501


PPOLG_HCV1
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE 1) (HCV)
1640-1670


PPOLG_HCVA
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN ALFORT) (SWINE FEVER VIRUS)
1363-1393
1560-1588
3131-







3159


PPOLG_HCVB
GENOME POLYPROTEIN
HOG CHOLERA VIRUS (STRAIN BRESCIA) (SWINE FEVER VIRUS)
102-135
1560-1588
3131-







3159


PPOLG_HCVBK
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE BK) (HCV)
1640-1670


PPOLG_HCVH
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE H) (HCV)
1640-1670


PPOLG_HCVH4
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HCV-476) (HCV)
254-291


PPOLG_HCVJ6
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J6) (HCV)
711-742


PPOLG_HCVJ8
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE HC-J8) (HCV)
711-742
1893-1924


PPOLG_HCVJA
GENOME POLYPROTEIN
HEPATITIS C VIRUS (ISOLATE JAPANESE) (HCV)
1640-1670


PPOLG_HCVJT
GENOME POLYPROTEIN
HEPATITIS VIRUS C (ISOLATE HC-JT) (HCV)
1640-1670


PPOLG_HCVTW
GENOME POLYPROIEIN
HEPATITIS C VIRUS (ISOLATE TAIWAN) (HCV)
1640-1670


PPOLG_HPAV2
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 24A)
1514-1550
2068-2099


PPOLG_HPAV4
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 43C)
1514-1550
2068-2099


PPOLG_HPAV8
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN 18F)
1514-1550
2068-2099


PPOLG_HPAVH
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN HM-175)
1515-1551
2069-2100


PPOLG_HPAVL
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN LA)
1515-1551
2069-2100


PPOLG_HPAVM
GENOME POLYPROTEIN
HEPATITIS A VIRUS (STRAIN MBB)
1515-1551
2069-2100


PPOLG_HPAVS
GENOME POLYPROTEIN
SIMIAN HEPATITIS A VIRUS (STRAIN AGM-27)
831-868
1517-1553


PPOLG_HRV14
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 14 (HRV-14)
1094-1132
2005-2041


PPOLG_HRV1B
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 1B (HRV-1B)
1453-1485
1816-1849
1983-







2019


PPOLG_HRV2
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 2 (HRV-2)
1446-1475
1809-1842
1976-







2012


PPOLG_HRV89
GENOME POLYPROTEIN
HUMAN RHINOVIRUS 89 (HRV-89)
1460-1492
1823-1856
1990-







2026


PPOLG_HUEV7
GENOME POLYPROTEIN
HUMAN ENTEROVIRUS 70 (STRAIN J670/71
1108-1145


PPOLG_IBDVO
STRUCTURAL POLYPROTEIN
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN OH)
222-260


PPOLG_JAEV1
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA-14)
61-95
1233-1269
1516-
2779-
3274-







1549
2813
3311


PPOLG_JAEV5
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN SA(V))
61-95
1233-1269
1516-
2779-
3274-







1549
2813
3311


PPOLG_JAEVJ
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN JAOARS982)
61-95
1233-1269
1516-
2779-
3274-







1549
2813
3311


PPOLG_JAEVN
GENOME POLYPROTEIN
JAPANESE ENCEPHALITIS VIRUS (STRAIN NAKAYAMA)
1161-1197


PPOLG_KUNJM
GENOME POLYPROTEIN
KUNJIN VIRUS (STRAIN MRM61C)
61-95
561-594
3275-







3312


PPOLG_LANVT
GENOME POLYPROTEIN
LANGAT VIRUS (STRAIN TP21)
1157-1188
1519-1551
2230-
2366-
3095-







2264
2398
3132


PPOLG_MCFA
GENOME POLYPROTEIN
MOSQUITO CELL FUSING AGENT (CFA FLAVIVIRUS)
1174-1206
1330-1359


PPOLG_MDMV
GENOME POLYPROTEIN
MAIZE DWARF MOSAIC VIRUS (MDMV)
322-351


PPOLG_MVEV
GENOME POLYPROTEIN
MURRAY VALLEY ENCEPHALITIS VIRUS
61-95
1305-1342


PPOLG_OMV
GENOME POLYPROTEIN
ORNITHOGALUM MOSAIC VIRUS
344-376


PPOLG_PEMVC
GENOME POLYPROTEIN
PEPPER MOTTLE VIRUS (CALIFORNIA ISOLATE) (PEMV)
826-859
1086-1124


PPOLG_POL1M
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1121-1158


PPOLG_POL1S
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN SABIN)
1122-1159


PPOLG_POL2L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN LANSING)
1120-1157


PPOLG_POL2W
GENOME POLYPROTEIN
POLIOVIRUS TYPE 2 (STRAIN W-2)
1120-1157


PPOLG_POL32
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAIN 23127)
1119-1156


PPOLG_POL3L
GENOME POLYPROTEIN
POLIOVIRUS TYPE 3 (STRAINS P3/LEON/37 AND P3/LEON 12A[1]B)
1119-1156


PPOLG_PPVD
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN D) (PPV)
2960-2991
3084-3113


PPOLG_PPVEA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN EL AMAR) (PPV)
1337-1368
1461-1490


PPOLG_PPVNA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (ISOLATE NAT) (PPV)
2944-2975
3068-3097


PPOLG_PPVRA
GENOME POLYPROTEIN
PLUM POX POTYVIRUS (STRAIN RANKOVIC) (PPV)
2959-2990
3083-3112


PPOLG_PSBMV
GENOME POLYPROTEIN
PEA SEED-BORNE MOSAIC VIRUS (STRAIN DPDI)
931-966
1411-1445
3149-







3178


PPOLG_PVYHU
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN HUNGARIAN) (PVY)
1302-1336
3004-3033


PPOLG_PVYN
GENOME POLYPROTEIN
POTATO VIRUS Y (STRAIN N) (PVY)
1302-1336


PPOLG_PYFVI
GENOME POLYPROTEIN
PARSNIP YELLOW FLECK VIRUS (ISOLATE P-121) (PYFV)
230-262
1110-1139
1903-







1931


PPOLG_SBMVN
GENOME POLYPROTEIN
SOYBEAN MOSAIC VIRUS (STRAIN N)
245-274


PPOLG_STEVM
GENOME POLYPROTEIN
ST. LOUIS ENCEPHALITIS VIRUS (STRAIN MSI-7)
61-95
1301-1331


PPOLG_SUMVS
GENOME POLYPROTEIN
SUGARCANE MOSAIC VIRUS (STRAIN SC)
307-336


PPOLG_SVDVH
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN H/3 ′76)
1585-1617


PPOLG_SVDVU
GENOME POLYPROTEIN
SWINE VESICULAR DISEASE VIRUS (STRAIN UKG/27/72)
1585-1617


PPOLG_TBEVS
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (STRAIN SOFJIN) (TBEV)
835-869
1157-1188
2366-
3093-







2398
3130


PPOLG_TBEVW
GENOME POLYPROTEIN
TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SUBTYPE) (TBEV)
1157-1188
2366-2398
3095-







3132


PPOLG_TEV
GENOME POLYPROTEIN
TOBACCO ETCH VIRUS (TEV)
827-865
2998-3027


PPOLG_TMEVB
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN BEAN 8386)
1074-1102
1193-1221
1470-
1908-







1508
1939


PPOLG_TMEVD
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN DA)
1072-1100
1191-1219
1468-
1906-







1506
1937


PPOLG_TMEVG
GENOME POLYPROTEIN
THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (STRAIN GDVH)
1074-1102
1193-1221
1470-
1908-







1508
1939


PPOLG_TUMV
GENOME POLYPROTEIN
TURNIP MOSAIC VIRUS (TUMV)
1573-1602


PPOLG_TVMV
GENOME POLYPROTEIN
TOBACCO VEIN MOTTLING VIRUS (TVMV)
2698-2733


PPOLG_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
958-987


PPOLG_WNV
GENOME POLYPROTEIN
WEST NILE VIRUS
61-95
557-590
3272-







3309


PPOLG_YEFV1
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN 17D)
1157-1186
1228-1266
1495-
2308-
3092-







1531
2340
3127


PPOLG_YEFV2
GENOME POLYPROTEIN
YELLOW FEVER VIRUS (STRAIN PASTEUR 17D-204)
1157-1186
1228-1266
1495-
2308-
3092-







1531
2340
3127


PPOLG_ZYMV
GENOME POLYPROTEIN
ZUCCHINI YELLOW MOSAIC VIRUS (ZYMV)
329-358


PPOLH_POLIM
GENOME POLYPROTEIN
POLIOVIRUS TYPE 1 (STRAIN MAHONEY)
1122-1159


PPOLH_WMV2
GENOME POLYPROTEIN
WATERMELON MOSAIC VIRUS II
244-273


PPOLN_EEVVT
NON-STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TRINIDAD DONKEY)
613-648
1436-1468


PPOLN_FCVC6
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN CFI/68 FIV) (FCV)
327-365


PPOLN_FCVF4
NON-STRUCTURAL POLYPROTEIN
FELINE CALICIVIRUS (STRAIN JAPANESE F4) (FCV)
300-333


PPOLN_FCVF9
NON-STRUCTURAL POLYFROTEIN
FELINE CALICIVIRUS (STRAIN F9) (FCV)
803-841


PPOLN_HEVBU
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN BURMA) (HEV)
1618-1652


PPOLN_HEVME
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MEXICO) (HEV)
1616-1650


PPOLN_HEVMY
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN MYANMAR) (HEV)
1618-1652


PPOLN_HEVPA
NON-STRUCTURAL POLYPROTEIN
HEPATITIS E VIRUS (STRAIN PAKISTAN) (HEV)
1617-1651


PPOLN_MIDDV
NON-STRUCTURAL POLYPROTEIN
MIDDELBURO VIRUS
25-57


PPOLN_ONNVG
NON-STRUCTURAL POLYPROTEIN
O′NYONG-NYONG VIRUS (STRAIN GULU) (ONN)
1144-1180
1404-1439


PPOLN_RHDV
NON-STRUCTURAL POLYPROTEIN
RABBIT HEMORRHAGIC DISEASE VIRUS (RHDV
299-337
1562-1594


PPOLN_SFV
NON-STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1146-1175
1406-1441


PPOLN_SINDO
NON-STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)
1454-1486


PPOLN_SINDV
NON-STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAIN HRSP)
1454-1486


PPOLS_EEEV
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS
524-556


PPOLS_EEEV3
STRUCTURAL POLYPROTEIN
EASTERN EQUINE ENCEPHALITIS VIRUS (STRAIN VA33[TEN BROECK])
525-557


PPOLS_EEVV8
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TC-83)
1203-1239


PPOLS_EEVVT
STRUCTURAL POLYPROTEIN
VENEZUELAN EQUINE ENCEPHALITIS VIRUS (STRAIN TRINIDAD DONKEY)
1203-1239


PPOLS_ONNVG
STRUCTURAL POLYPROTEIN
O'NYONG-NYONG VIRUS (STRAIN GULU) (ONN)
1150-1182
1201-1235


PPOLS_RRVN
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN NB5092) (RRV)
1216-1250


PPOLS_RRVT
STRUCTURAL POLYPROTEIN
ROSS RIVER VIRUS (STRAIN T48) (RRV)
1216-1250


PPOLS_SFV
STRUCTURAL POLYPROTEIN
SEMLIKI FOREST VIRUS
1215-1251


PPOLS_SINDO
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (SUBTYPE OCKELBO/STRAIN EDSBYN 82-5)
1197-1233


PPOLS_SINDV
STRUCTURAL POLYPROTEIN
SINDBIS VIRUS (STRAINS HRSP AND HRLP)
1197-1233


PPOLS_WEEV
STRUCTURAL POLYPROTEIN
WESTERN EQUINE ENCEPHALITIS VIRUS
1188-1224


PPOL_BIV06
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) (BIV)
742-773


PPOL_BIV27
POL POLYPROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV)
742-773


PPOL_BLVAU
POL POLYPROTEIN
BOVINE LEUKEMIA VIRUS (AUSTRALIAN ISOLATE) (BLV)
343-374


PPOL_CAEVC
POL POLYPROTEIN
CAPRINE ARTHRITIS ENCEPHALITIS VIRUS (STRAIN CORK) (CAEV)
206-240
322-355


PPOL_COYMV
PUTATIVE POLYPROTEIN
COMMELINA YELLOW MOTTLE VIRUS (COYMV)
1234-1267
1484-1518
1750-
1800-







1788
1831


PPOL_EIAV9
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) (EIAV)
166-198
506-539


PPOL_EIAVC
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) (EIAV)
166-198
506-539


PPOL_EIAVY
POL POLYPROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) (EIAV)
166-198
505-538


PPOL_FOAMV
POL POLYPROTEIN
HUMAN SPUMARETROVIRUS (FOAMY VIRUS)
126-154


PPOL_GALV
POL POLYPROTEIN
GIBBON APE LEUKEMIA VIRUS
348-378


PPOL_HTL1A
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (STRAIN ATK) (HTLV-1)
657-688


PPOL_HTL1C
POL POLYPROTEIN
HUMAN T-CELL LEUKEMIA VIRUS TYPE 1 (CARIBBEAN ISOLATE) (HTLV-1)
657-688


PPOL_HV1A2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE) (HIV-1)
331-364
500-537


PPOL_HV1B1
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE) (HIV-1)
343-376
512-549


PPOL_HV1B5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH5 ISOLATE) (HIV-1)
343-376
512-549


PPOL_HV1BR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) (HIV-1)
343-376
512-549


PPOL_HV1EL
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ELI ISOLATE) (HIV-1)
330-363
499-536


PPOL_HV1H2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) (HIV-1)
331-364
500-537


PPOL_HV1JR
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) (HIV-1)
335-368
504-541


PPOL_HV1MA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MAL ISOLATE) (HIV-1)
330-363


PPOL_HV1MN
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (MN ISOLATE) (HIV-1)
334-367
503-540


PPOL_HV1N5
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NEW YORK-5 ISOLATE) (HIV-1)
331-364
500-537


PPOL_HV1ND
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (NDK ISOLATE) (HIV-1)
330-363
499-536


PPOL_HV1OY
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (OYI ISOLATE) (HIV-1)
331-364
500-537


PPOL_HV1PV
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) (HIV-1)
343-376
512-549


PPOL_HV1RH
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (RF/HAT ISOLATE) (HIV-1)
330-363
499-536


PPOL_HV1U4
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (STRAIN UGANDAN/ISOLATE
330-363
499-536


PPOL_HV1Z2
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 ISOLATE) (HIV-1)
330-363
499-536


PPOL_HV2CA
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) (HIV-2)
353-386


PPOL_HV2NZ
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) (HIV-2)
353-386


PPOL_HV2RO
POL POLYPROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) (HIV-2)
354-387


PPOL_IPHA
PUTATIVE POL POLYPROTEIN
HAMSTER INTRACISTERNAL A-PARTICLE (IAP-H18
460-496


PPOL_JSRV
POL POLYPROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
186-220


PPOL_MPMV
POL POLYPROTEIN
SIMIAN MASON-PFIZER VIRUS (MPMV)
650-681


PPOL_OMVVS
POL POLYPROTEIN
OVINE LENTIVIRUS (STRAIN SA-OMVV)
61-98
102-130
182-
298-







216
331


PPOL_RTBV
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
788-824
891-919
1399-







1433


PPOL_RTBVP
POLYPROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) (RTBV)
788-824
891-919
1399-







1433


PPOL_SFV3L
POL POLYPROTEIN
SIMIAN FOAMY VIRUS (TYPE 3/STRAIN LK3) (SFV-3)
337-365


PPOL_SIVCI
POL POLYPROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV)
355-388
524-561


PPOL_SOCMV
ENZYMATIC POLYPROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
17-55
58-89


PPOL_SRV1
POL POLYPROTEIN
SIMIAN RETROVIRUS SRV-1
650-681


PPOL_VILV
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514)
 80-117
201-235
317-







350


PPOL_VILV1
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS1)
 80-117
317-350


PPOL_VILV2
POL POLYPROTEIN
VISNA LENTIVIRUS (STRAIN 1514/CLONE LV1-1KS2)
 80-117
201-235
317-







350


PPP41_HSV6G
PHOSPHOPROTEIN P41
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
60-91


PPTP_NPVAC
PROTEIN-TYROSINE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
53-85



PHOSPHATASE


PREEP_CSV
REPEAT ELEMENT PROTEIN
CAMPOLETIS SONORENSIS VIRUS (CSV)
113-149


PREV_BIV27
REV PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV)
 74-109


PREV_EIAV9
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE 1369) (EIAV)
44-79


PREV_EIAVC
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (CLONE CL22) (EIAV)
44-79


PREV_EIAVY
REV PROTEIN
EQUINE INFECTIOUS ANEMIA VIRUS (ISOLATE WYOMING) (EIAV)
 74-109


PREV_SIVAT
REV PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (TYO-1 ISOLATE) (SIV-AGM)
25-62


PRIR1_ASFM2
RIBONUCLEOSIDE-DIPHOSPHATE
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI LIL 20/1) (ASFV)
630-666



REDUCTASE LARGE CH


PRIR1_HCMVA
RIBONUCLEOSIDE-DIPHOSPHATE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
279-311
393-430
449-



REDUCTASE LARGE CH



477


PRIR1_HSVEB
RIBONUCLEOSIDE-DIPHOSPHATE
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
60-92
503-531



REDUCTASE LARGE CH


PRIR1_VACCC
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN COPENHAGEN)
203-235



REDUCTASE LARGE CH


PRIR1_VACCV
RIBONUCLEOSIDE-DIPHOSPHATE
VACCINIA VIRUS (STRAIN WR)
203-235



REDUCTASE LARGE CH


PRIR1_VARV
RIBONUCLEOSIDE-DIPHOSPHATE
VARIOLA VIRUS
203-235



REDUCTASE LARGE CH


PRIR1_VZVD
RIBONUCLEOSIDE-DIPHOSPHATE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
34-72
221-254
488-



REDUCTASE LARGE CH



516


PRMIL_AVEVR
RMIL SERINE/THREONINE-
AVIAN ROUS-ASSOCIATED VIRUS TYPE 1
149-177



PROTEIN KINASE TRANSFORM


PRMIL_AVIII
RMIL SERINE/THREONINE-
AVIAN RETROVIRUS IC10
133-161



PROTEIN KINASE TRANSFORM


PRP94_VACCV
RNA-POLYMERASE-ASSOCIATED
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
399-427



TRANSCRIPTION SPECIF


PRP94_VARV
RNA-POLYMERASE-ASSOCIATED
VARIOLA VIRUS
399-427



TRANSCRIPTION SPECIF


PRPO1_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR)
1005-1033



POLYMERASE 147 KD POLYPEPTIDE


PRPO2_CAPVK
DNA-DIRECTED RNA
CAPRIPOXVIRUS (STRAIN KS-1)
297-333
667-696



POLYMERASE 132 KD POLYPEPTIDE


PRPO2_COWPX
DNA-DIRECTED RNA
COWPOX VIRUS (CPV)
202-236
542-578



POLYMERASE 132 KD POLYPEPTIDE


PRPO2_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
202-236
542-578



POLYMERASE 132 KD POLYPEPTIDE


PRPO2_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
202-236
542-578



POLYMERASE 132 KD POLYPEPTIDE


PRPO7_VACCV
DNA-DIRECTED RNA
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
38-66



POLYMERASE 19 KD POLYPEPTIDE


PRPO7_VARV
DNA-DIRECTED RNA
VARIOLA VIRUS
38-66



POLYMERASE 19 KD POLYPEPTIDE


PRPO8_FOWP1
DNA-DIRECTED RNA
FOWLPOX VIRUS (STRAIN FP-1)
57-88



POLYMERASE 18 KD POLYPEPTIDE


PRPOA_LELV
RNA-DIRECTED RNA
LELYSTAD VIRUS (LV)
1233-1268
3133-3163
3426-



POLYMERASE



3457


PRPOL_EAV
RNA-DIRECTED RNA
EQUINE ARTERITIS VIRUS (EAV)
171-207
3041-3072



POLYMERASE


PRRP1_DHVI1
RNA-DIRECTED RNA
DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)
 96-125
199-234



POLYMERASE SUBUNIT P1


PRRP1_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
138-170



POLYMERASE SUBUNIT P1


PRRP1_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/JJ/50)
564-598



POLYMERASE SUBUNIT P1


PRRP2_IAANN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
398-435
484-518



POLYMERASE SUBUNIT P2


PRRP2_IADH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/DUCK/HOKKAIDO/8/80)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK/34)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAHLO
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/EQUINE /LONDON/1416/73)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAHTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/EQUINE /TENNESSEE/5/86)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAKOR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/KOREA/426/68)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IALE1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IALE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/17/57)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IANT6
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/NT/60/68
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAPI0
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAPUE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34
484-518



POLYMERASE SUBUNIT P2


PRRP2_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW JERSEY/47/85)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IASIN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SINGAPORE/1/57)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAVI7
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/VICTORIA/3/75)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAWIL
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/WILSON-SMITH/33)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAZH2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/81/78)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAZH3
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SWINE/HONG KONG/126/82)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAZI1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
484-518



POLYMERASE SUBUNIT P2


PRRP2_IAZTF
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/26/77)
484-518



POLYMERASE SUBUNIT P2


PRRP3_IABUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/BUDGERIGAR/HOKKAIDO/1/77)
515-553
585-613



POLYMERASE SUBUNIT P3


PRRP3_IAFPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK/34)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IAFPW
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/WEYBRIDGE)
579-613



POLYMERASE SUBUNIT P3


PRRP3_IAGU2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/GULL/MARYLAND/704/77)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IAGUA
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/GULL/ASTRAKHAN/227/84)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IAHPR
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/EQUINE /PRAGUE/1/56)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IAMAN
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IARUD
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/RUDDY TURNSTONE/NEW JERSEY/47/85)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IASE2
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SEAL/MASSACHUSETTS/133/82)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IATKM
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/TURKEY/MINNESOTA/833/80)
585-613



POLYMERASE SUBUNIT P3


PRRP3_IAZI1
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
585-613



POLYMERASE SUBUNIT P3


PRAP3_IAZTE
RNA-DIRECTED RNA
INFLUENZA A VIRUS (STRAIN A/SWINE/TENNESSEE/24/77)
585-613



POLYMERASE SUBUNIT P3


PRRP3_INBAC
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [COLD-ADAPTED])
735-769



POLYMERASE SUBUNIT P3


PRRP3_INBAD
RNA-DIRECTED RNA
INFLUENZA B VIRUS (STRAIN B/ANN ARBOR/1/66 [WILD-TYPE])
735-769



POLYMERASE SUBUNIT P3


PRRP3_INCBE
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/BERLIN/1/85)
609-641



POLYMERASE SUBUNIT P3


PRRP3_INCJJ
RNA-DIRECTED RNA
INFLUENZA C VIRUS (STRAIN C/JJ/50)
609-641



POLYMERASE SUBUNIT P3


PRRP3_THOGV
RNA-DIRECTED RNA
THOGOTO VIRUS (THO)
109-145
324-356



POLYMERASE SUBUNIT P3


PRRPA_CVH22
RNA-DIRECTED RNA POLYMERASE
HUMAN CORONAVIRUS (STRAIN 229E)
410-443
712-745
1262-
1963-
2078-
2474-
3153-







1295
1999
2112
2508
3191


PRRPA_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
708-740
3544-3577
3757-
3933-







3785
3961


PRRPB_BEV
RNA-DIRECTED RNA POLYMERASE
BERNE VIRUS (BEV)
941-969
2137-2169
2178-







2206


PRRPB_CVMA5
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN A59)
346-380
684-714
1689-
2698-







1722
2730


PRRPB_CVMJH
RNA-DIRECTED RNA POLYMERASE
MURINE CORONAVIRUS MHV (STRAIN JHM)
346-380
684-714
1687-
2356-
2696-







1720
2391
2728


PRRPB_CVPFS
RNA-DIRECTED RNA POLYMERASE
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS
173-207
322-350
482-







515


PRRPB_CVPR8
RNA-DIRECTED RHA POLYMERASE
PORCINE RESPIRATORY CORONAVIRUS
 80-113


PRRPB_IBVB
RNA-DIRECTED RNA POLYMERASE
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)
636-670


PRRPL_BUNYW
RNA POLYMERASE
BUNYAMWERA VIRUS
303-331
1096-1128


PRRPL_HANTV
RNA POLYMERASE
HANTAAN VIRUS (STRAIN 76-118) (KOREAN HEMORRHAGIC FEVER VIRUS)
1938-1971


PRRPL_HRSVA
RNA POLYMERASE BETA SUBUNIT
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
892-922
1181-1213


PRRPL_MABVM
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN MUSOKE)
144-176
698-736
1042-
1797-







1074
1832


PRRPL_MABVP
RNA-DIRECTED RNA POLYMERASE
MARBURG VIRUS (STRAIN POPP)
144-176
698-736
1042-
2223-







1074
2253


PRRPL_MEASE
RNA POLYMERASE BETA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
193-227
647-683
788-
1160-
1886-







825
1192
1914


PRRPL_MUMPM
RNA POLYMERASE BETA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
1882-1913


PRRPL_NDVB
RNA POLYMERASE BETA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) (NDV)
626-661
1571-1603


PRRPL_PI2HT
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) (PIV-2)
268-305
558-595
654-
1562-
1881-
2025-







688
1599
1912
2053


PRRPL_PI3H4
RNA POLYMERASE BETA SUBUNIT
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
41-76
735-764
784-
2111-







814
2139


PRRPL_RABVP
RNA POLYMLRASE BETA SUBUNIT
RABIES VIRUS (STRAIN PV)
60-90
804-837
1365-
1930-







1394
1962


PRRPL_RABVS
RNA POLYMERASE BETA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
60-90
804-837
1365-
1930-







1394
1962


PRRPL_RDV
RNA-DIRECTED RNA POLYMERASE
RICE DWARF VIRUS (RDV)
1293-1323


PRRPL_RVFVZ
RNA-DIRECTED RNA POLYMERASE
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) (RVFV)
1018-1055
2009-2044


PRRPL_SEND5
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
194-231
233-269
735-
784-
2140-







764
814
2177


PRRPL_SENDE
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN ENDERS)
14-51
53-89
555-
1927-
1960-







584
1955
1997


PRRPL_SENDZ
RNA POLYMERASE BETA SUBUNIT
SENDAI VIRUS (STRAIN Z)
194-231
233-269
735-
784-
2140-







764
814
2177


PRRPL_SEOU8
RNA-DIRECTED RNA POLYMERASE
SEOUL VIRUS (STRAIN 80-39)
394-431
1938-1971
2081-







2119


PRRPL_SV5WR
RNA POLYMERASE BETA SUBUNIT
SIMIAN VIRUS 5 (STRAIN 21004-WR) (SV5)
557-594
1094-1122
2020-







2051


PRRPL_SYNV
RNA POLYMERASE BETA SUBUNIT
SONCHUS YELLOW NET VIRUS (SYNV)
126-164
605-634
820-
918-
1484-







856
951
1517


PRRPL_TSWVB
RNA-DIRECTED RNA POLYMERASE
TOMATO SPOTTED WILT VIRUS (BRAZILIAN ISOLATE CPNH1/BR-01) (TSWV)
43-79
843-880
2266-
2369-
2481-
2805-







2298
2403
2511
2840


PRRPL_UUK
RNA POLYMERASE
UUKUNIEMI VIRUS (UUK)
1017-1051
1147-1177
1293-
2060-







1321
2095


PRRPL_VSVJH
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
209-246
312-349
1011-
1662-
1956-







1039
1697
1989


PRRPL_VSVJO
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS
1011-1039
1956-1989


PRRPL_VSVSJ
RNA POLYMERASE BETA SUBUNIT
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
138-171
209-246
312-
961-
1011-
1739-
2051-







349
999
1039
1772
2087


PRRPO_BWYVF
PUTATIVE RNA-DIRECTED RNA
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) (BWYV)
346-374



POLYMERASE


PRRPO_BYDVI
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE MAV-PS1) (BYDV)
722-755



POLYMERASE


PRRPO_BYDVP
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE PAV) (BYDV)
722-755



POLYMERASE


PRRPO_BYDVR
PUTATIVE RNA-DIRECTED RNA
BARLEY YELLOW DWARF VIRUS (ISOLATE P-PAV) (BYDV)
722-755



POLYMERASE


PRRPO_CARMV
PUTATIVE RNA-DIRECTED RNA
CARNATION MOTTLE VIRUS (CARMV)
 4-37



POLYMERASE


PRRPO_CGMVS
PUTATIVE RNA-DIRECTED RNA
CUCUMBER GREEN MOTTLE MOSAIC VIRUS (WATERMELON STRAIN SH)
443-481
725-755
1095-
1565-



POLYMERASE



1132
1597


PRRPO_CNV
PROBABLE RNA-DIRECTED RNA
CUCUMBER NECROSIS VIRUS (CNV)
470-501



POLYMERASE


PRRPO_CRV
PROBABLE RNA-DIRECTED RNA
CYMBIDIUM RINGSPOT VIRUS
28-62
267-300
470-



POLYMERASE



501


PRRPO_IBDV5
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE VIRUS (STRAIN 52/70) (IBDV)
186-218
274-302



POLYMERASE


PRRPO_IBDVA
PUTATIVE RNA-DIRECTED RNA
AVIAN INFECTIOUS BURSAL DISEASE VIRUS
260-288
511-543
599-



POLYMERASE



627


PRRPO_IPNVJ
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE JASPER)
360-390
749-778



POLYMERASE


PRRPO_IPNVS
PUTATIVE RNA-DIRECTED RNA
INFECTIOUS PANCREATIC NECROSIS VIRUS (SEROTYPE SP) (IPNV)
360-390
749-778



POLYMERASE


PRRPO_LYCVA
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN ARMSTRONG)
109-137
263-291
2077-







2106


PRRPO_LYCVW
RNA POLYMERASE
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN WE)
109-137


PRRPO_MCMV
PROBABLE RNA-DIRECTED RNA
MAIZE CHLOROTIC MOTTLE VIRUS (MCMV)
16-48
53-81



POLYMERASE


PRRPO_PLRVI
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV)
576-607



POLYMERASE


PRRPO_PLRVW
PUTATIVE RNA-DIRECTED RNA
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) (PLRV)
576-607



POLYMERASE


PRRPO_PPMVS
PUTATIVE RNA-DIRECTED RNA
PEPPER MILD MOTTLE VIRUS (STRAIN SPAIN) (PPMV)
375-407
702-730
859-
1069-
1533-



POLYMERASE



891
1106
1565


PRRPO_RCNMV
PUTATIVE RNA-DIRECTED RNA
RED CLOVER NECROTIC MOSAIC VIRUS (RCNMV)
278-314
320-353



POLYMERASE


PRRPO_REOVJ
RNA-DIRECTED RNA POLYMERASE
REOVIRUS (TYPE 2/STRAIN D5/JONES)
284-315


PRRPO_ROTBR
RNA-DIRECTED RNA POLYMERASE
BOVINE ROTAVIRUS (STRAIN RF)
25-60
200-231
247-



SUBUNIT VP1



276


PRRPO_ROTBU
RNA-DIRECTED RNA POLYMERASE
BOVINE ROTAVIRUS (STRAIN UK)
200-231
247-276



SUBUNIT VP1


PRRPO_ROTPG
RNA-DIRECTED RNA POLYMERASE
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
200-231
247-276



SUBUNIT VP1


PRRPO_ROTS1
RNA-DIRECTED RNA POLYMERASE
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
25-60
200-231
247-



SUBUNIT VP1



276


PRRPO_TACV
RNA POLYMERASE
TACARIBE VIRUS
17-52
109-138
2078-







2112


PRRPO_TBSVC
PROBABLE RNA-DIRECTED RNA
TOMATO BUSHY STUNT VIRUS (STRAIN CHERRY) (TBSV)
470-501



POLYMERASE


PRRPO_TCV
PROBABLE RNA-DIRECTED RNA
TURNIP CRINKLE VIRUS (TCV)
280-318



POLYMERASE


PRRPO_TMGMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MILD GREEN MOSAIC VIRUS (TMV STRAIN U2)
67-97
128-159
209-
376-
450-
855-
1527-



POLYMERASE



244
406
483
887
1559


PRRPO_TMV
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (VULGARE) (TMV)
128-159
376-406
700-
1533-



POLYMERASE



728
1565


PRRPO_TMVKR
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN KOREAN) (TMV)
128-159
376-406
700-
1533-



POLYMERASE



728
1565


PRRPO_TMVTO
PUTATIVE RNA-DIRECTED RNA
TOBACCO MOSAIC VIRUS (STRAIN TOMATO/L) (TMV)
128-159
376-406
700-
857-
1533-



POLYMERASE



728
889
1565


PRRPO_TNVA
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN A) (TNV)
231-263


PRRPO_TNVD
RNA-DIRECTED RNA POLYMERASE
TOBACCO NECROSIS VIRUS (STRAIN D) (TNV)
 5-40
234-270


PRRPP_CDVO
RNA POLYMERASE ALPHA SUBUNIT
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) (CDV)
295-332


PRRPP_MEASE
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN EDMONSTON)
295-332


PRRPP_MEASI
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN IP-3-CA)
295-332


PRRPP_MEASY
RNA POLYMERASE ALPHA SUBUNIT
MEASLES VIRUS (STRAIN YAMAGATA-1)
295-332


PRRPP_MUMPI
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN SBL-1)
211-248


PRRPP_MUMPE
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN ENDERS)
212-249


PRRPP_MUMPM
RNA POLYMERASE ALPHA SUBUNIT
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
212-249


PRRPP_NDVA
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN AUSTRALIA-VICTORIA/32) (NDV)
220-255


PRRPP_NDVB
RNA POLYMERASE ALPHA SUBUNIT
NEWCASTLE DISEASE VIRUS (STRAIN BEAUDETTE C/45) (NDV)
220-255


PRRPP_PI2H
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (PIV-2
216-253


PRRPP_PI2HT
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 2 VIRUS (STRAIN TOSHIBA) (PIV-2)
216-253


PRRPP_PI4HA
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4A VIRUS (STRAIN TOSHIBA) (PIV-4A)
220-257
332-364


PRRPP_PI4HB
RNA POLYMERASE ALPHA SUBUNIT
HUMAN PARAINFLUENZA 4B VIRUS (STRAIN 68-333) (PIV-4B)
220-257
332-364


PRRPP_PIRYV
RNA POLYMERASE ALPHA SUBUNIT
PIRY VIRUS
134-168


PRRPP_RABVA
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN AVO1)
216-244


PRRPP_RABVC
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN CVS-11)
216-244


PRRPP_RABVE
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN ERA), AND RABIES VIRUS (STRAIN PM)
216-244


PRRPP_RABVP
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN PV)
 89-122
216-244


PRRPP_RABVS
RNA POLYMERASE ALPHA SUBUNIT
RABIES VIRUS (STRAIN SAD B19)
216-244


PRRPP_SEND5
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
530-566


PRRPP_SEND6
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN 6/94)
530-566


PRRPP_SENDF
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN FUSHIMI)
530-566


PRRPP_SENDH
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN HARRIS)
530-566


PRRPP_SENDZ
RNA POLYMERASE ALPHA SUBUNIT
SENDAI VIRUS (STRAIN Z)
530-566


PRRPP_SV5
RNA POLYMERASE ALPHA SUBUNIT
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
199-236


PRRPP_VSVJM
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRAIN MISSOURI)
198-230


PRRPP_VSVJO
RNA POLYMERASE ALPHA SUBUNIT
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY/STRAIN OGDEN)
197-230


PSODC_VACCC
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
19-55



LIKE PROTEIN


PSODC_VACCV
SUPEROXIDE DISMUTASE
VACCINIA VIRUS (STRAIN WR)
19-55



LIKE PROTEIN


PSODC_VARV
SUPEROXIDE DISMUTASE
VARIOLA VIRUS
19-55



LIKE PROTEIN


PSPHR_AMEPV
SPHEROIDIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
58-86
138-172
627-
671-







659
701


PSPI1_MYXVL
SERPIN I
MYXOMA VIRUS (STRAIN LAUSANNE)
167-200


PSPI3_VACCC
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN COPENHAGEN)
112-140


PSPI3_VACCV
SERINE PROTEINASE INHIBITOR 3
VACCINIA VIRUS (STRAIN WR)
112-140


PSPI3_VARV
SERINE PROTEINASE INHIBITOR 1
VARIOLA VIRUS
116-144


PTAG8_FOWPV
TRANS-ACTIVATOR PROTEIN FP0
FOWLPOX VIRUS
199-230


PTALA_BFDV
LARGE T ANTIGEN
BUDGERIGAR FLEDGLING DISEASE VIRUS (BFDV)
 99-129
172-210
461-







491


PTAMI_POVHA
MIDDLE T ANTIGEN
HAMSTER POLYOMAVIRUS
106-138


PTAMI_POVM3
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN 3)
43-80


PTAMI_POVMA
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
43-80


PTAMI_POVMC
MIDDLE T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN CRAWFORD SMALL-PLAQUE)
43-80


PTASM_POVBA
SMALL T ANTIGEN
POLYOMAVIRUS BK (STRAIN AS)
130-162


PTASM_POVBK
SMALL T ANTIGEN
POLYOMAVIRUS BK
130-162


PTASM_POVHA
SMALL T ANTIGEN
HAMSTER POLYOMAVIRUS
106-138


PTASM_POVMA
SMALL T ANTIGEN
MOUSE POLYOMAVIRUS (STRAIN A2)
43-80


PTASM_SV40
SMALL T ANTIGEN
SIMIAN VIRUS 40 (SV40)
132-164


PTEGU_EBV
LARGE TEGUMENT PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
143-173
1469-1503
1791-
3102-







1819
3137


PTEGU_HCMVA
PROBABLE LARGE TEGUMENT
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
161-192
699-736
812-
2199-



PROTEIN



840
2228


PTEGU_HSV6G
LARGE TEGUMENT PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
222-259
566-601
615-
1436-
2037-







643
1469
2072


PTEGU_HSVEB
LARGE TEGUMENT PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
265-297
559-589
1072-
3363-







1106
3392


PTEGU_HSVSA
PROBABLE LARGE TEGUMENT
HERPESVIRUS SAIMIRI (STRAIN 11)
467-505
714-751
823-
926-
1503-
2421-



PROTEIN



861
960
1536
2457


PTERM_ADE07
DNA TERMINAL PROTEIN
HUMAN ADENOVIRUS TYPE 7
369-400


PTMAF_AVIS4
TRANSFORMING PROTEIN MAF
AVIAN MUSCULOAPONEUROTIC FIRBOSARCOMA VIRUS AS42
230-267


PTOP2_ASFB7
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) (ASFV)
119-153
1105-1142


PTOP2_ASFM2
DNA TOPOISOMERASE II
AFRICAN SWINE FEVER VIRUS (ISOLATE MALAWI LIL 20/1) (ASFV)
119-153
1104-1141


PTREL_AVIRE
REL TRANSFORMING PROTEIN
AVIAN RETICULOENDOTHELIOSIS VIRUS
189-226


PTYSY_VZVD
THYMIDYLATE SYNTHASE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
121-156


PUIL_HSV6U
PROTEIN IL
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
171-203


PUDPE_NPVAC
ECDYSTEROID UDP-
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
185-219
387-425
452-



GLUCOSYLTRANSFERASE



484



PRECURSOR


PUL02_HCMVA
HYPOTHETICAL PROTEIN UL2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
25-59


PUL06_EBV
VIRION PROTEIN BBRF1
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
355-386


PUL06_HSV11
VIRION PROTEIN UL6
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-436


PUL06_HSVEB
VIRION GENE 56 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
222-251
437-475


PUL06_HSVSA
VIRION GENE 43 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
299-330


PUL06_VZVD
VIRION GENE 54 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
223-252
502-530


PUL07_HCMVA
HYPOTHETICAL PROTEIN UL7
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
186-216


PUL07_HSVEB
GENE 55 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
Nov-39  


PUL08_HCMVA
HYPOTHETICAL PROTEIN UL8
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
65-96


PUL08_HSV11
PROTEIN UL8
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
614-648


PUL08_VZVD
GENE 52 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
227-255


PUL09_HSV11
ORIGIN OF REPLICATION
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
678-713



BINDING PROTEIN


PUL09_VZVD
ORIGIN OF REPLICATION
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
168-204



BINDING PROTEIN


PUL14_PRVN3
UL14 PROTEIN HOMOLOG 
PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV)
40-76


PUL16_HSV11
PROTEIN UL16
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
22-52


PUL17_HSV6U
PROTEIN 10R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
302-339


PUL21_HSVEB
GENE 40 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P)(EHV-1)
294-328


PUL21_PRVN3
PROTEIN UL21 HOMOLOG
PSEUDORABIES VIRUS (STRAIN NIA-3) (PRV)
242-271


PUL21_VZVD
GENE 38 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
56-92
375-412


PUL24_HCMVA
HYPOTHETICAL PROTEIN UL24
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
52-87


PUL24_ILTVT
PROTEIN UL24 HOMOLOG
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE V882)
158-196


PUL25_HSVEB
VIRION PROTEIN UL25
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
343-379


PUL25_HSVSA
VIRION GENE 19 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
290-323


PUL25_VZVD
VIRION GENE 34 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
540-571


PUL28_HCMVA
HYPOTHETICAL PROTEIN UL28
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
287-316


PUL31_HCMVA
HYPOTHETICAL PROTEIN UL31
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
464-501


PUL31_HSVSA
GENE 69 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
163-197


PUL32_EBV
PROBABLE MAJOR ENVELOPE
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
367-405



GLYCOPROTEIN BFLF1


PUL32_HSV11
PROBABLE MAJOR ENVELOPE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
404-438
564-592



GLYCOPROTEIN UL32


PUL32_HSVEB
MAJOR ENVELOPE
EQUINE HERPESVIRUS TYPE 1
 81-115



GLYCOPROTEIN 300


PUL32_HSVSA
PROBABLE MAJOR ENVELOPE
HERPESVIRUS SAIMIRI (STRAIN 11)
276-307



GLYCOPROTEIN 68


PUL32_VZVD
PROBABLE MAJOR ENVELOPE
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
553-581



GLYCOPROTEIN 26


PUL34_HSVSA
GENE 67 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 98-130


PUL35_HCMVA
HYPOTHETICAL PROTEIN UL35
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
138-169


PUL36_HCMVA
HYPOTHETICAL PROTEIN UL36
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
186-223


PUL37_EBV
PROTEIN BOLF1
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
 85-123


PUL37_HSVEB
GENE 23 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
702-732
778-812


PUL37_HSVSA
GENE 63 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
566-602


PUL37_VZVD
GENE 21 PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
598-629
706-736
776-







806


PUL38_HCMVA
HYPOTHETICAL PROTEIN UL38
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
157-188


PUL41_VZVD
HOST SHUTOFF VIRION PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
274-307


PUL43_HSV11
MEMBRANE PROTEIN UL43
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
41-70


PUL45_HSV11
GENE 15 MEMBRANE PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
34-64
277-308


PUL47_HCMVA
PROTEIN UL47
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
438-471
741-777


PUL47_HSVE4
97 KD ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 4
580-615



PROTEIN


PUL47_HSVEB
97 KD ALPHA TRANS-INDUCING
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
587-622



PROTEIN


PUL49_HSV11
TEGUMENT PROTEIN UL49
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
226-259


PUL49_HSVBP
TEGUMENT PROTEIN UL49
BOVINE HERPESVIRUS TYPE 1 (STRAIN P8-2)
135-168



HOMOLOG


PUL52_EBV
PROBABLE DNA REPLICATION
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
582-617



PROTEIN BSLF1


PUL52_HSV11
DNA REPLICATION PROTEIN UL52
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
599-629
771-805


PUL52_HSVEB
DNA REPLICATION PROTEIN UL52
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
316-344
580-618
912-







947


PUL52_HSVSA
PROBABLE DNA REPLICATION GENE
HERPESVIRUS SAIMIRI (STRAIN 11)
229-267
374-411



56 PROTEIN


PUL53_HCMVA
PROTEIN UL53
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
213-248


PUL53_HSV6U
UL53 PROTEIN HOMOLOG
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
105-139


PUL60_HCMVA
HYPOTHETICAL PROTEIN UL60
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
120-148


PUL70_HCMVA
PROBABLE DNA REPLICATION
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
36-65
626-664



PROTEIN UL70


PUL77_HCMVA
VIRION PROTEIN UL77
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
381-413
565-598


PUL78_HCMVA
HYPOTHETICAL PROTEIN UL78
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
262-290
303-341


PUL79_HSVSA
HYPOTHETICAL GENE 18 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
158-195


PUL87_HSV6U
HYPOTHETICAL PROTEIN 5R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
130-159


PUL87_HSVSA
HYPOTHETICAL GENE 24 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
322-355


PUL88_HCMVA
HYPOTHETICAL PROTEIN UL88
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
309-337


PUL88_HSV6U
HYPOTHETICAL PROTEIN 6R
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
150-187
238-272


PUL91_HSVSA
HYPOTHETICAL GENE 30 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
23-53


PUL92_EBV
HYPOTHETICAL PROTEIN BDLF4
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
106-144


PUL92_HSVSA
HYPOTHETICAL GENE 31 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
123-157


PUL93_HCMVA
PROTEIN UL93
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
387-420


PUL95_EBV
HYPOTHETICAL PROTEIN BGLF3
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
111-145


PULB8_HCMVA
HYPOTHETICAL PROTEIN UL118
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
102-130
152-181


PULC1_HCMVA
HYPOTHETICAL PROTEIN UL121
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
129-165


PULC8_HCMVA
HYPOTHETICAL PROTEIN UL128
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
64-96


PULC9_HCMVA
HYPOTHETICAL PROTEIN UL129
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
66-99


PULD0_HCMVA
HYPOTHETICAL PROTEIN UL130
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 81-114


PUNG_EBV
URACIL-DNA GLYCOSYLASE
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
159-189


PUNG_VACCC
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN COPENHAGEN)
 82-117


PUNG_VACCV
URACIL-DNA GLYCOSYLASE
VACCINIA VIRUS (STRAIN WR)
 82-117


PUNG_VARV
URACIL-DNA GLYCOSYLASE
VARIOLA VIRUS
 82-117


PUS02_HCMVA
HYPOTHETICAL PROTEIN HQLF2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-73


PUS07_HCMVA
HYPOTHETICAL PROTEIN HXLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
153-190


PUS09_HCMVA
HYPOTHETICAL PROTEIN HXLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
179-213


PUS10_HCMVA
HYPOTHETICAL PROTEIN HXLF2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
137-170


PUS12_HCMVA
HYPOTHETICAL PROTEIN HVLF6
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
29-67
113-142


PUS13_HCMVA
HYPOTHETICAL PROTEIN HVLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
11-45


PUS15_HCMVA
HYPOTHETICAL PROTEIN HVLF3
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
343-375


PUS16_HCMVA
HYPOTHETICAL PROTEIN HVLF2
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
151-188
243-274


PUS18_HCMVA
MEMBRANE PROTEIN HWLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
185-222


PUS22_HCMVA
EARLY NUCLEAR PROTEIN HWLF1
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
270-299


PUS26_HCMVA
HYPOTHETICAL PROTEIN HHLF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
132-164


PUS27_HCMVA
G-PROTEIN COUPLED
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
247-285



RECEPTOR HOMOLOG US27


PUS29_HCMVA
HYPOTHETICAL PROTEIN HHRF4
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
246-276


PUS30_HCMVA
HYPOTHETICAL PROTEIN HHRF5
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
208-246


PV125_AMVLE
125 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN
263-292


PV13K_TRVPL
16 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN PLB)
24-62


PV143_NPVAC
HELICASE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS
312-342


PV17K_BSMV
17 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
40-75


PV1A_CMVFN
1A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY) (CMV)
674-709


PV270_ASFB7
L270 PROTEIN
AFRICAN SWINE FEVER VIRUS (STRAIN BA71V) (ASFV)
103-135


PV2A_BBMV
2A PROTEIN
BROAD BEAN MOTTLE VIRUS
636-673


PV2A_CCMV
2A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS (CCMV)
325-363
639-673
762-







799


PV2A_CMVFN
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN FNY) (CMV)
208-243
292-320


PV2A_CMVQ
2A PROTEIN
CUCUMBER MOSAIC VIRUS (STRAIN Q) (CMV)
205-240


PV2A_TAV
2A PROTEIN
TOMATO ASPERMY VIRUS (TAV)
297-325


PV30K_TRVTC
29.1 KD PROTEIN
TOBACCO RATTLE VIRUS (STRAIN TCM)
102-133


PV3A_BBMV
3A PROTEIN
BROAD BEAN MOTTLE VIRUS
155-187


PV3A_BMV
3A PROTEIN
BROME MOSAIC VIRUS (BMV)
159-189


PV3A_CCMV
3A PROTEIN
COWPEA CHLOROTIC MOTTLE VIRUS (CCMV)
160-188


PV3A_IBVB
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)
 5-43


PV3A_IBVM
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN M41) (IBV)
 5-42


PV3A_IBVP3
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS
 5-42


PV3A_IBVU5
3A PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN UK/183/66) (IBV)
 5-42


PV51K_ACLSV
50.8 KD PROTEIN
APPLE CHLOROTIC LEAF SPOT VIRUS (ACLSV)
 70-106


PV51K_BWYVF
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE FL-1) (BWYV)
366-398


PV51K_BWYVG
51 KD PROTEIN
BEET WESTERN YELLOWS VIRUS (ISOLATE GB1) (BWYV)
366-398


PV56K_PLRV1
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV)
360-392


PV56K_PLRVW
56 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) (PLRV)
360-392


PV58K_BSMV
58 KD PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
320-353


PV70K_PLRV1
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN 1) (PLRV)
220-257


PV70K_PLRVW
69.7 KD PROTEIN
POTATO LEAFROLL VIRUS (STRAIN WAGENINGEN) (PLRV)
220-257


PV90K_AMVLE
90 KD PROTEIN
ALFALFA MOSAIC VIRUS (STRAIN 425/ISOLATE LEIDEN)
103-131


PVA04_VACCC
PROTEIN A4
VACCINIA VIRUS (STRAIN COPENHAGEN)
217-251


PVA04_VACCV
PROTEIN A4
VACCINIA VIRUS (STRAIN WR)
217-251


PVA04_VARV
PROTEIN A4
VARIOLA VIRUS
207-241


PVA11_VACCC
PROTEIN A11
VACCINIA VIRUS (STRAIN COPENHAGEN)
 95-132


PVA11_VARV
PROTEIN A11
VARIOLA VIRUS
 96-133


PVA18_VACCC
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
390-421


PVA18_VACCV
56 KD ABORTIVE LATE PROTEIN
VACCINIA VIRUS (STRAIN WR)
390-421


PVA18_VARV
56 KD ABORTIVE LATE PROTEIN
VARIOLA VIRUS
390-421


PVA23_VACCC
PROTEIN A23
VACCINIA VIRUS (STRAIN COPENHAGEN)
 81-111
170-203


PVA23_VARV
PROTEIN A23
VARIOLA VIRUS
 81-111
170-203


PVA31_VACCC
PROTEIN A31
VACCINIA VIRUS (STRAIN COPENHAGEN)
42-76


PVA31_VACCV
PROTEIN A31
VACCINIA VIRUS (STRAIN WR)
42-76


PVA31_VARV
PROTEIN A31
VARIOLA VIRUS
42-76


PVA32_VACCV
PROTEIN A32
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
48-79


PVA32_VARV
PROTEIN A32
VARIOLA VIRUS
18-49


PVA40_VACCC
PROTEIN A40
VACCINIA VIRUS (STRAIN COPENHAGEN)
 4-37


PVA43_VACCC
PROTEIN A43
VACCINIA VIRUS (STRAIN COPENHAGEN)
 94-129


PVA43_VACCV
PROTEIN A43
VACCINIA VIRUS (STRAIN WR)
 94-129


PVA43_VARV
PROTEIN A43
VARIOLA VIRUS
 95-130


PVA51_VACCC
PROTEIN A51
VACCINIA VIRUS (STRAIN COPENHAGEN)
109-143


PVA51_VACCV
PROTEIN A51
VACCINIA VIRUS (STRAIN WR)
109-143


PVAL1_BCTV
AL1 PROTEIN
BEET CURLY TOP VIRUS (BCTV)
 89-118


PVAL1_BGMV
AL1 PROTEIN
BEAN GOLDEN MOSAIC VIRUS
 89-118


PVAL1_CLVK
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
 88-117


PVAL1_CLVN
AL1 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
 88-117


PVAL1_PYMVV
AL1 PROTEIN
POTATO YELLOW MOSAIC VIRUS (ISOLATE VENEZUELA)
 89-118


PVAL1_TGMV
AL1 PROTEIN
TOMATO GOLDEN MOSAIC VIRUS (TGMV)
 90-119


PVAL1_TYLCM
AL1 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS (STRAIN MARMANDE) (TYLCV)
 89-118


PVAL1_TYLCV
AL1 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS (TYLCV)
 87-116


PVAL3_BCTV
AL3 PROTEIN
BEET CURLY TOP VIRUS (BCTV)
 82-115


PVAL3_CLYK
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN WEST KENYAN 844)
 77-113


PVAL3_CLVN
AL3 PROTEIN
CASSAVA LATENT VIRUS (STRAIN NIGERIAN)
 77-113


PVAL3_TYLCM
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS (STRAIN MARMANDE) (TYLCV)
 78-116


PVAL3_TYLCV
AL3 PROTEIN
TOMATO YELLOW LEAF CURL VIRUS (TYLCV)
 77-113


PVAT_CAMVC
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN CM-1841) (CAMV)
20-53
 81-116


PVAT_CAMVD
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN D/H) (CAMV)
20-53
102-130


PVAT_CAMVE
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN BBC) (CAMV)
20-53
 81-116


PVAT_CAMVN
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN NY8153) (CAMV)
20-53
 81-116


PVAT_CAMVP
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN PV147) (CAMV)
20-53
 81-116


PVAT_CAMVS
APHID TRANSMISSION PROTEIN
CAULIFLOWER MOSAIC VIRUS (STRAIN STRASBOURG) (CAMV)
20-53
 83-116


PVB04_VACCC
PROTEIN B4
VACCINIA VIRUS (STRAIN COPENHAGEN)
124-156
489-525


PVB04_VACCV
PROTEIN B4
VACCINIA VIRUS (STRAIN WR)
124-156
489-525


PVB04_VARV
PROTEIN B4
VARIOLA VIRUS
489-525


PVB16_COWPX
INTERLEUKIN-1 BINDING PROTEIN
COWPOX VIRUS (CPV)
 89-126



PRECURSOR


PVB16_VACCV
INTERLEUKIN-1 BINDING PROTEIN
VACCINIA VIRUS (STRAIN WR)
 89-126



PRECURSOR


PVB19_VACCC
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN COPENHAGEN)
213-244


PVB19_VACCD
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN DAIREN 1)
211-242


PVB19_VACCV
SURFACE ANTIGEN S PRECURSOR
VACCINIA VIRUS (STRAIN WR)
211-242


PVH19_VARV
SURFACE ANTIGEN S PRECURSOR
VARIOLA VIRUS
211-242


PVBR1_BGMV
BRI PROTEIN
BEAN GOLDEN MOSAIC VIRUS
166-198


PVC03_SFVKA
G-PROTEIN COUPLED
SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)
 98-130



RECEPTOR HOMOLOG C3


PVC04_VACCC
PROTEIN C4
VACCINIA VIRUS (STRAIN COPENHAGEN)
109-139
182-216


PVC04_VACCV
PROTEIN C4
VACCINIA VIRUS (STRAIN WR)
109-139
183-215


PVC04_VARV
PROTEIN C4
VARIOLA VIRUS
109-139


PVC06_VACCC
PROTEIN C6
VACCINIA VIRUS (STRAIN COPENHAGEN)
36-67


PVC06_VACCV
PROTEIN C6
VACCINIA VIRUS (STRAIN WR)
36-67


PVC06_VARV
PROTEIN C6
VARIOLA VIRUS
36-67


PVC07_SFVKA
HYPOTHETICAL PROTEIN C7
SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)
60-97


PVC09_VACCC
PROTEIN C9
VACCINIA VIRUS (STRAIN COPENHAGEN)
573-610


PVC09_VACCV
PROTEIN C9
VACCINIA VIRUS (STRAIN WR)
573-610


PVC10_SFVKA
HYPOTHETICAL PROTEIN C10
SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)
 85-121


PVC10_VACCC
PROTEIN C10
VACCINIA VIRUS (STRAIN COPENHAGEN)
121-158


PVC10_VACCV
PROTEIN C10
VACCINIA VIRUS (STRAIN WR)
121-158


PVC10_VARV
PROTEIN C10
VARIOLA VIRUS
121-158


PVC21_VACCC
PROTEIN C21/B27
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-34


PVCAP_EBV
MAJOR CAPSID PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
148-183
200-230


PVCAP_HCMVA
MAJOR CAPSID PROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
43-78
128-161
258-







286


PVCAP_HSV11
MAJOR CAPSID PROIEIN
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
19-49


PVCAP_HSV6U
MAJOR CAPSID PROTEIN
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
124-161
666-696
841-







869


PVCAP_HSVEB
MAJOR CAPSID PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
17-54
198-232
272-







301


PVCAP_HSVSA
MAJOR CAPSID PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
144-179
196-226
734-
1062-







769
1096


PVCAP_PRVIS
MAJOR CAPSID PROTEIN
PSEUDORABIES VIRUS (STRAIN INDIANA S) (PRV)
189-221
260-289


PVCAP_VZVD
MAJOR CAPSID PROTEIN
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
31-68


PVCOM_ADE02
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 2
 86-115


PVCOM_ADE05
MINOR CORE PROTEIN
HUMAN ADENOVIRUS TYPE 5
 85-114


PVD03_VACCC
PROTEIN D3
VACCINIA VIRUS (STRAIN COPENHAGEN)
12-50
146-182


PVD03_VACCV
PROTEIN D3
VACCINIA VIRUS (STRAIN WR)
12-50
146-182


PVD03_VARV
PROTEIN D3
VARIOLA VIRUS
12-50
146-182


PVD05_FOWP1
92.6 KD PROTEIN
FOWLPOX VIRUS (STRAIN FP-1)
315-352


PVD05_VACCC
PROTEIN D5
VACCINIA VIRUS (STRAIN COPENHAGEN)
320-348


PVD05_VACCV
PROTEIN D5
VACCINIA VIRUS (STRAIN WR)
320-348


PVD05_VARV
PROTEIN D5
VARIOLA VIRUS
320-348


PVD10_FOWP1
PROTEIN D10
FOWLPOX VIRUS (STRAIN FP-1)
114-143


PVE05_VACCD
PROTEIN E5
VACCINIA VIRUS (STRAIN DAIREN 1)
31-60


PVE06_VACCC
PROTEIN E6
VACCINIA VIRUS (STRAIN COPENHAGEN)
226-260
430-458
511-







540


PVE06_VACCV
PROTEIN E6
VACCINIA VIRUS (STRAIN WR)
226-260
430-458
511-







540


PVE06_VARV
PROTEIN E6
VARIOLA VIRUS
430-458
511-540


PVE10_VACCC
PROTEIN E10
VACCINIA VIRUS (STRAIN COPENHAGEN)
 3-41


PVE10_VACCV
PROTEIN E10
VACCINIA VIRUS (STRAIN WR)
 3-41


PVE10_VARV
PROTEIN E10
VARIOLA VIRUS
 3-41


PVE12_HPV16
PROBABLE E1 PROTEIN 2
HUMAN PAPILLOMAVIRUS TYPE 16
102-131


PVE18_NPVAC
EARLY 18.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
45-77


PVE1_HPV05
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
 4-35


PVE1_HPV11
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
258-291


PVE1_HPV13
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
255-288


PVE1_HPV33
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
238-267
519-547


PVE1_HPV35
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
230-263


PVE1_HPV39
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
242-271


PVE1_HPV41
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
105-138
183-231


PVE1_HPV58
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
238-267


PVE1_HPV5B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 6-35


PVE1_HPV6B
E1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
258-291


PVE1_PAPVD
E1 PROTEIN
DEER PAPILLOMAVIRUS
163-201


PVE1_PCPV1
E1 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
257-290


PVE26_NPVAC
EARLY 25.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
118-150


PVE2_HPV57
E2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 57
151-182


PVE2_RHPV1
E2 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1)
117-147


PVE41_NPVAC
EARLY 40.9 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
14-52


PVE5A_HPV11
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
19-56


PVE5A_HPV6B
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
19-56


PVE5A_HPV6C
PROBABLE E5A PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6C
19-56


PVE5_HPV13
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 13
19-56


PVE5_HPV5B
PROBABLE E5 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
 89-118


PVE5_PCPV1
PROBABLE E5 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
21-58


PVE5_RHPV1
PROBABLE E5 PROTEIN
RHESUS PAPILLOMAVIRUS TYPE 1 (RHPV 1)
109-140


PVE6_HPV1A
E6 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
 91-128


PVE7_HPV05
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
55-90


PVE7_HPV08
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
55-90


PVE7_HPV11
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 11
47-83


PVE7_HPV16
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 16
47-83


PVE7_HPV1A
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
45-77


PVE7_HPV31
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 31
47-83


PVE7_HPV33
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 33
47-83


PVE7_HPV35
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 35
48-84


PVE7_HPV41
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 41
63-94


PVE7_HPV47
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
55-90


PVE7_HPV51
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
61-94


PVE7_HPV58
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 58
48-84


PVE7_HPV5B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
55-90


PVE7_HPV6B
E7 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 6B
47-83


PVE7_PAPVD
E7 PROTEIN
DEER PAPILLOMAVIRUS
48-86


PVE7_PAPVE
E7 PROTEIN
EUROPEAN ELK PAPILLOMAVIRUS (EEPV)
60-93


PVE94_NPVAC
EARLY 94 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
123-157
650-678


PVEF_GVTN
VIRAL ENHANCING FACTOR
TRICHOPLUSIA NI GRANULOSIS VIRUS (TNGV)
154-182


PVENV_BEV
ENVELOPE PROTEIN
BERNE VIRUS (BEV)
16-51
87-117


PVENV_DHV11
ENVELOPE GLYCOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/61) (DHO)
197-335



PRECURSOR


PVENV_MCV1
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 1 (MCVI)
203-236


PVENV_MCV2
MAJOR ENVELOPE PROTEIN
MOLLUSCUM CONTAGIOSUM VIRUS SUBTYPE 2 (MCVII)
203-236


PVENV_VACCC
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
208-241


PVENV_VACCI
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN IHD-J)
208-241


PVENV_VACCP
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN L-IVP)
208-241


PVENV_VACCV
MAJOR ENVELOPE PROTEIN
VACCINIA VIRUS (STRAIN WR)
208-241


PVENV_VARV
MAJOR ENVELOPE PROTEIN
VARIOLA VIRUS
155-187
208-241


PVF03_VACCC
PROTEIN F3
VACCINIA VIRUS (STRAIN COPENHAGEN)
 2-40
61-93


PVF03_VACCV
PROTEIN F3
VACCINIA VIRUS (STRAIN WR)
 2-40
61-93


PVFP1_FOWPV
PROTEIN FP1
FOWLPOX VIRUS
297-330


PVFP4_FOWPV
PROTEIN FP4
FOWLPOX VIRUS
237-267


PVFP7_CAPVK
PROTEIN F7
CAPRIPOXVIRUS (STRAIN KS-1)
 89-118


PVFUS_VACCC
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
28-61


PVFUS_VACCV
14 KD FUSION PROTEIN
VACCINIA VIRUS (STRAIN WR)
28-61


PVFUS_VARV
14 KD FUSION PROTEIN
VARIOLA VIRUS
28-61


PVG01_HSV11
HYPOTHETICAL GENE 1 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
317-346


PVG02_HSVEB
HYPOTHETICAL GENE 2 PROTEIN
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
163-196


PVG02_VACCV
ISATIN-BETA-THIOSEMI-
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
 92-120



CARBAZONE DEPENDENT PROTEIN


PVG02_VARV
ISATIN-BETA-THIOSEMI-
VARIOLA VIRUS
 92-120



CARBAZONE DEPENDENT PROTEIN


PVG03_HSV11
HYPOTHETICAL GENE 3 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
108-136


PVG06_HSV11
HYPOTHETICAL GENE 6 MEMBRANE
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
54-83



PROTEIN


PVG06_VACCC
PROTEIN G6
VACCINIA VIRUS (STRAIN COPENHAGEN)
 99-136


PVG06_VARV
PROTEIN G6
VARIOLA VIRUS
 99-136


PVG07_VACCC
PROTEIN G7
VACCINIA VIRUS (STRAIN COPENHAGEN)
113-145


PVG07_VARV
PROTEIN G7
VARIOLA VIRUS
113-145


PVG09_VACCC
PROTEIN F1
VACCINIA VIRUS (STRAIN COPENHAGEN)
303-338


PVG09_VACCV
PROTEIN F1
VACCINIA VIRUS (STRAIN WR)
266-301


PVG09_VARV
PROTEIN F1
VARIOLA VIRUS
303-338


PVG11_HSV11
HYPOTHETICAL GENE 11
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
150-183




ZINC-BINDING PROTEIN


PVG12_HSV11
HYPOTHETICAL GENE 12
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
206-243



ZINC-BINDING PROTEIN


PVG12_HSVSA
HYPOTHETICAL GENE 12 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 68-106


PVG1_SPV1R
CAPSID PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
254-292
303-337
414-







452


PVG22_HSV11
HYPOTHETICAL GENE 22 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
300-337
647-678


PVG23_HSV11
HYPOTHETICAL GENE 23 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
 70-108


PVG26_HSV11
HYPOTHETICAL GENE 26 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
 94-125


PVG27_HSVSA
HYPOTHETICAL GENE 27 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
36-74


PVG28_HSV11
HYPOTHETICAL GENE 28 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
491-521


PVG2R_AMEPV
HYPOTHETICAL G2R PROTEIN
AMSACTA MOOREI ENTOMOPOXVIRUS (AMEPV)
180-217


PVG2_SPV4
GENE 2 PROTEIN
SPIROPLASMA VIRUS 4 (SPV4)
209-244


PVG35_HSV11
HYPOTHETICAL GENE 35 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
15-46
190-226


PVG36_HSVSA
POSSIBLE TYROSINE-PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
151-185



KINASE


PVG39_HSV11
HYPOTHETICAL GENE 39 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
543-577
648-682


PVG40_HSVSA
HYPOTHETICAL GENE 40 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
187-216


PVG41_HSV11
HYPOTHETICAL GENE 41 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
11-45
202-233


PVG42_HSV11
HYPOTHETICAL GENE 42 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
 91-125


PVG43_HSV11
HYPOTHETICAL GENE 43 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
109-140
157-185


PVG46_HSV11
PROBABLE MAJOR GLYCOPROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
888-925


PVG48_HSVSA
HYPOTHETICAL GENE 48 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
329-357


PVG50_HSVSA
PROBABLE TRANSCRIPTION
HERPESVIRUS SAIMIRI (STRAIN 11)
113-141



ACTIVATOR-EDRF1


PVG51_HSV11
HYPOTHETICAL GENE 51
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS)(CCV)
29-64
 84-120



MEMBRANE PROTEIN


PVG52_HSV11
HYPOTHETICAL GENE 52 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
 96-134


PVG55_HSV11
HYPOTHETICAL GENE 55 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
100-129


PVG56_HSV11
HYPOTHETICAL GENE 56 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
364-396
631-667
1091-







1126


PVG58_HSV11
HYPOTHETICAL GENE 58 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
342-375
480-508


PVG58_HSVSA
GENE 58 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
25-60
195-233


PVG59_HSV11
HYPOTHETICAL GENE 59
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
 82-118



MEMBRANE PROTEIN


PVG61_HSV11
HYPOTHETICAL GENE 61 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
 76-109


PVG64_HSV11
HYPOTHETICAL GENE 64 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
55-89
363-401
420-







452


PVG65_HSV11
HYPOTHETICAL GENE 65 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
801-836
1146-1174
1290-







1326


PVG67_HSV11
HYPOTHETICAL GENE 67 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
1150-1185


PVG6_SPV1R
GENE 6 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
60-89


PVG71_HSVSA
HYPOTHETICAL GENE 71 PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
128-158


PVG72_HSV11
HYPOTHETICAL GENE 72 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
445-478
720-751
1158-
1252-







1189
1285


PVG75_HSV11
HYPOTHETICAL GENE 75 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
263-291
387-422


PVG76_HSV11
HYPOTHETICAL GENE 76 PROTEIN
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
187-221


PVG7_SPV1R
GENE 7 PROTEIN
SPIROPLASMA VIRUS SPV1-R8A2 B
18-46


PVGF1_IBVB
F1 PROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)
1719-1747
1856-1891
2108-
3601-







2146
3633


PVGH3_HCMVA
GLYCOPROTEIN H301 PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 80-115
157-185


PVGL2_CVBF
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN F15)
1259-1294


PVGL2_CVBL9
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN L9)
651-681


PVGL2_CVBLY
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN LY-138)
1259-1294


PVGL2_CVBM
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN MEBUS)
1259-1294


PVGL2_CVBQ
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN QUEBEC)
1259-1294


PVGL2_CVBV
E2 GLYCOPROTEIN PRECURSOR
BOVINE CORONAVIRUS (STRAIN VACCINE)
1259-1294


PVGL2_CVH22
E2 GLYCOPROTEIN PRECURSOR
HUMAN CORONAVIRUS (STRAIN 229E)
1053-1088


PVGL2_CVM4
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN WILD TYPE 4) (MHV-4)
1267-1304


PVGL2_CVMA5
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN A59)
1215-1252


PVGL2_CVMJC
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHMV/VARIANT CL-2)
1267-1304


PVGL2_CVMJH
E2 GLYCOPROTEIN PRECURSOR
MURINE CORONAVIRUS MHV (STRAIN JHM)
1126-1163


PVGL2_CVPFS
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS
632-665
736-764
1328-







1363


PVGL2_CVPMI
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS
632-665
736-764
1328-







1363


PVGL2_CVPPR
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS
630-663
734-762
1326-







1361


PVGL2_CVPPU
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS
630-663
734-762
1326-







1361


PVGL2_CVPR8
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS
512-540
1104-1139


PVGL2_CVPRM
E2 GLYCOPROTEIN PRECURSOR
PORCINE RESPIRATORY CORONAVIRUS (STRAIN RM4) (PRCV)
408-441
512-540
1104-







1139


PVGL2_CVPRT
E2 GLYCOPROTEIN PRECURSOR
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (STRAIN NEB7
630-663
734-762
1326-







1361


PVGL2_FIPV
E2 GLYCOPROTEIN PRECURSOR
FELINE INFECTIOUS PERITONITIS VIRUS (STRAIN 79-1146) (FIPV)
635-668
739-767
1331-







1366


PVGL2_IBVB
E2 GLYCOPROTEIN PRECURSOR
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)
153-188


PVGLB_HCMVA
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
116-147
706-743


PVGLB_HCMVT
GLYCOPROTEIN B PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
116-147
707-744


PVGLB_HSV6U
GLYCOPROTEIN B
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
 72-110


PVGLB_HSVB1
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPESVIRUS TYPE 1
254-288


PVGLB_HSVB2
GLYCOPROTEIN B-1 PRECURSOR
BOVINE HERPESVIRUS TYPE 2 (STRAIN BMV) (BOVINE MAMMILLITIS VIRUS
745-774


PVGLB_HSVBC
GLYCOPROTEIN 1 PRECURSOR
BOVINE HERPES VIRUS TYPE 1 (STRAIN COOPER)
253-287


PVGLB_ILTV6
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN 632) (ILIV)
442-472


PVGLB_ILTVS
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN SA-2) (ILTV)
452-482


PVGLB_ILTVT
GLYCOPROTEIN B PRECURSOR
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE V882) (ILTV)
452-482


PVGLB_MCMVS
GLYCOPROTEIN B PRECURSOR
MURINE CYTOMEGALOVIRUS (STRAIN SMITH)
135-163
738-776


PVGLC_HSV11
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
467-500


PVGLC_HSV1K
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN KOS)
467-500


PVGLC_HSV2
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2)
435-465


PVGLC_HSV23
GLYCOPROTEIN C PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 2/STRAIN 333)
436-466


PVGLC_HSVBC
GLYCOPROTEIN G111 PRECURSOR
BOVINE HERPESVIRUS TYPE 1 (STRAIN COOPER)
475-507


PVGLC_VZVD
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
351-388
513-548


PVGLC_VZVS
GLYCOPROTEIN GPV
VARICELLA-ZOSTER VIRUS (STRAIN SCOTT) (VZV)
351-388
513-548


PVGLD_HSVEA
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB1) (EHV-1)
340-370


PVGLD_HSVEB
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
41-70
390-420


PVGLD_HSVEK
GLYCOPROTEIN D PRECURSOR
EQUINE HERPESVIRUS TYPE 1
41-70
390-420


PVGLE_HSVE4
GLYCOPROTEIN E
EQUINE HERPESVIRUS TYPE 4
 95-125


PVGLE_HSVEB
GLYCOPROTEIN E PRECURSOR
EQUINE HERPESVIRUS TYPE 1
 63-100
390-420


PVGLE_HSVEL
GLYCOPROTEIN E PRECURSOR
EQUINE HERPESVIRUS TYPE 1
 63-100
390-422


PVGLE_PRVR1
GLYCOPROTEIN G1 PRECURSOR
PSEUDORABIES VIRUS (STRAIN RICE) (PRV)
332-369


PVGLF_BRSVA
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN A51908) (BRS)
265-301
482-511



PRECURSOR


PVGLF_BRSVC
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN COPENHAGEN) (BRS)
484-513



PRECURSOR


PVGLF_BRSVR
FUSION GLYCOPROTEIN
BOVINE RESPIRATORY SYNCYTIAL VIRUS (STRAIN RB94) (BRS)
484-513



PRECURSOR


PVGLF_CDVO
FUSION GLYCOPROTEIN
CANINE DISTEMPER VIRUS (STRAIN ONDERSTEPOORT) (CDV)
562-596



PRECURSOR


PVGLF_HRSV1
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAIN 18537)
484-513



PRECURSOR


PVGLF_HRSVA
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
484-513



PRECURSOR


PVGLF_HRSVL
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP A/STRAIN LONG)
484-513



PRECURSOR


PVGLF_HRSVR
FUSION GLYCOPROTEIN
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN RSS-2)
484-513



PRECURSOR


PVGLF_MEASE
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN EDMONSTON)
224-256
451-484



PRECURSOR


PVGLF_MEASI
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN IP-3-CA)
227-259
454-487



PRECURSOR


PVGLF_MEASY
FUSION GLYCOPROTEIN
MEASLES VIRUS (STRAIN YAMAGATA-1)
224-256
451-484



PRECURSOR


PVGLF_MUMP1
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL-1)
 5-38
446-474



PRECURSOR


PVGLF_MUMPM
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN MIYAHARA VACCINE)
446-474



PRECURSOR


PVGLF_MUMPR
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN RW)
446-474



PRECURSOR


PVGLF_MUMPS
FUSION GLYCOPROTEIN
MUMPS VIRUS (STRAIN SBL)
 5-38
446-474



PRECURSOR


PVGLF_NDVI
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN ITALIEN/45) (NDV)
132-165



PRECURSOR


PVGLF_NDVL
FUSION GLYCOPROTEIN
NEWCASTLE DISEASE VIRUS (STRAIN LAS/46) (NDV)
132-165



PRECURSOR


PVGLF_PHODV
FUSION GLYCOPROTEIN
PHOCINE DISTEMPER VIRUS
531-565



PRECURSOR


PVGLF_PHHC
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 1 VIRUS (STRAIN C39)
456-484



PRECURSOR


PVGLF_P13B
FUSION GLYCOPROTEIN
BOVINE PARAINFLUENZA 3 VIRUS
453-481



PRECURSOR


PVGLF_PI3H4
FUSION GLYCOPROTEIN
HUMAN PARAINFLUENZA 3 VIRUS (STRAIN NIH 47885)
453-481



PRECURSOR


PVGLF_RINDK
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN KABETE O) (RDV)
220-252
447-480



PRECURSOR


PVGLF_RINDL
FUSION GLYCOPROTEIN
RINDERPEST VIRUS (STRAIN L) (RDV)
220-252
447-480



PRECURSOR


PVGLF_SEND5
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z/HOST MUTANTS)
460-488



PRECURSOR


PVGLF_SENDF
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN FUSHIMI)
460-488



PRECURSOR


PVGLF_SENDH
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HARRIS)
460-488



PRECURSOR


PVGLF_SENDJ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN HVJ)
460-488



PRECURSOR


PVGLF_SENDZ
FUSION GLYCOPROTEIN
SENDAI VIRUS (STRAIN Z)
460-488



PRECURSOR


PVGLF_SV5
FUSION GLYCOPROTEIN
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
446-474



PRECURSOR


PVGLF_TRTV
FUSION GLYCOPROTEIN
TURKEY RHINOTRACHEITIS VIRUS (TRTV)
452-481



PRECURSOR


PVGLG_HSVEB
GLYCOPROTEIN G PRECURSOR
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
327-364


PVGLG_SYNV
SPIKE GLYCOPROTEIN PRECURSOR
SONCHUS YELLOW NET VIRUS (SYNV)
524-553


PVGLG_VSVIG
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS (SEROTYPE INDIANA/STRAIN GLASGOW)
450-488


PVGLG_VSVJO
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS (SEROTYPE NEW JERSEY 1 STRAIN OGDEN)
457-492


PVGLG_VSVO
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS (STRAIN ORSAY)
450-488


PVGLG_VSVSJ
SPIKE GLYCOPROTEIN PRECURSOR
VESICULAR STOMATITIS VIRUS (STRAIN SAN JUAN)
450-488


PVGLH_HCMVA
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
691-719


PVGLH_HCMVT
GLYCOPROTEIN H PRECURSOR
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
690-718


PVGLH_HSV6G
GLYCOPROTEIN H PRECURSOR
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
215-247
640-677


PVGLH_HSVE4
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 4
814-850


PVGLH_HSVEB
GLYCOPROTEIN H PRECURSOR
EQUINE HERPESVIRUS TYPE 1
807-843


PVGLI_HCMVA
IMMEDIATE EARLY GLYCOPROTEIN
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
158-194



PRECURSOR


PVGLM_BUNGE
M POLYPROTEIN PRECURSOR
BUNYAVIRUS GERMISTON
197-227
438-468
 982-
1049-







1020
1084


PVGLM_BUNL7
M POLYPROTEIN PRECURSOR
BUNYAVIRUS LA CROSSE (ISOLATE L74)
190-220


PVGLM_BUNSH
M POLYPROTEIN PRECURSOR
BUNYAVIRUS SNOWSHOE HARE
190-220
344-381


PVGLM_BUNYW
M POLYPROTEIN PRECURSOR
BUNYAMWERA VIRUS
193-228
434-472
823-







854


PVGLM_DUGBV
M POLYPROTEIN PRECURSOR
DUGBE VIRUS
244-273
637-672
886-
935-
1403-







915
965
1441


PVGLM_HANTB
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN B-1) (KOREAN HEMORRHAGIC FEVER VIRUS)
610-641
1081-1119


PVGLM_HANTH
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN HOJO)
188-222
612-643
1082-







1120


PVGLM_HANTL
M POLYPROTEIN PRECURSOR
HANTAAN VIRUS (STRAIN LEE)
188-222
612-643
1083-







1121


PVGLM_HANTV
M POLYPROTEIN PRECURSOR
HANTAAV VIRUS (STRAIN 76-118)
188-222
612-643
1083-







1121


PVGLM_INSV
M POLYPROTEIN PRECURSOR
IMPATIENS NECROTIC SPOT VIRUS (INSV)
269-307
1028-1062


PVGLM_PHV
M POLYPROTEIN PRECURSOR
PROSPECT HILL VIRUS (PHV)
616-649
1088-1121


PVGLM_PTPV
M POLYPROTEIN PRECURSOR
PUNTA TORO PHLEBOVIRUS
949-982
1275-1309


PVGLM_PUUMH
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN HALLNAS B1)
620-653
1092-1125


PVGLM_PUUMS
M POLYPROTEIN PRECURSOR
PUUMALA VIRUS (STRAIN SOTKAMO)
620-653
1092-1125


PVGLM_RVFV
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS (RVFV)
620-650
830-863


PVGLM_RVFVZ
M POLYPROTEIN PRECURSOR
RIFT VALLEY FEVER VIRUS (STRAIN ZH-548 M12) (RVFV)
620-650
830-863
1156-







1185


PVGLM_SEOU8
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN 80-39)
610-641
1081-1119


PVGLM_SEOUR
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN R22)
605-641
1082-1120


PVGLM_SEOUS
M POLYPROTEIN PRECURSOR
SEOUL VIRUS (STRAIN SR-11) (SAPPORO RAT VIRUS)
610-641
1081-1119


PVGLM_UUK
M POLYPROTEIN PRECURSOR
UUKUNIEMI VIRUS (UUK)
431-468
966-995


PVGLP_BEV
PEPLOMER GLYCOPROTEIN
BERNE VIRUS (BEV)
1491-1526



PRECURSOR


PVGLY_JUNIN
GLYCOPROTEIN POLYPROTEIN
JUNIN ARENAVIRUS
12-45



PRECURSOR


PVGLY_LASSG
GLYCOPROTEIN POLYPROTEIN
LASSA VIRUS (STRAIN GA391)
237-265



PRECURSOR


PVGLY_LASSJ
GLYCOPROTEIN POLYPROTEIN
LASSA VIRUS (STRAIN JOSIAH)
238-266



PRECURSOR


PVGLY_PIARV
GLYCOPROTEIN POLYPROTEIN
PICHINDE ARENAVIRUS
12-50



PRECURSOR


PVGLY_TACV
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS
12-50



PRECURSOR


PVGLY_TACV5
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN V5)
12-50
 89-124



PRECURSOR


PVGLY_TACV7
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN V7)
12-50
 89-124



PRECURSOR


PVGLY_TACVT
GLYCOPROTEIN POLYPROTEIN
TACARIBE VIRUS (STRAIN TRVL 11598)
12-50
 89-124



PRECURSOR


PVGNB_CPMV
GENOME POLYPROTEIN B
COWPEA MOSAIC VIRUS (CPMV)
1527-1555


PVGNM_CPMV
GENOME POLYPROTEIN M
COWPEA MOSAIC VIRUS (CPMV)
209-242
741-771


PVGNM_CPSMV
GENOME POLYPROTEIN M
COWPEA SEVERE MOSAIC VIRUS (STRAIN DG)
50-86
479-515


PVGNM_RCMV
GENOME POLYPROTEIN M
RED CLOVER MOTTLE VIRUS (RCMV)
766-799


PVGP2_EBV
PROBABLE MEMBRANE
EPSTEIN-BARR VIURS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
 78-111



ANTIGEN GP220


PVGP3_EBV
ENVELOPE GLYCOPROTEIN GP340
EPSTEIN-BARR VIURS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
 78-111


PVH02_VACCC
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-89


PVH02_VACCV
LATE PROTEIN H2
VACCINIA VIRUS (STRAIN WR)
54-89


PVH02_VARV
LATE PROTEIN H2
VARIOLA VIRUS


PHV05_VACCC
PROTEIN H5
VACCINIA VIRUS (STRAIN COPENHAGEN)
115-149


PVH05_VACCV
PROTEIN H5
VACCINIA VIRUS (STRAIN WR)
115-149


PVH05_VARV
PROTEIN H5
VARIOLA VIRUS
133-167


PVHEL_LSV
PROBABLE HELICASE
LILY SYMPTOMLESS VIRUS (LSV)
107-143


PV101_VACCC
PROTEIN 11
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-82


PV101_VARV
PROTEIN 11
VARIOLA VIRUS
54-82


PV106_VACCV
PROTEIN 16
VACCINIA VIRUS (STRAIN WR)
55-88


PV106_VARV
PROTEIN 16
VARIOLA VIRUS
55-88


PV108_VACCC
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN COPENHAGEN)
591-624


PV108-VACCV
PUTATIVE RNA HELICASE 18
VACCINIA VIRUS (STRAIN WR)
591-624


PV108-VARV
PUTATIVE RNA HELICASE 18
VARIOLA VIRUS
591-624


PVIE1_HCMVA
55 KD IMMEDIATE-EARLY
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
243-271



PROTEIN 1


PVIE1_HCMVT
55 KD IMMEDIATE-EARLY
HUMAN CYTOMEGALOVIRUS (STRAIN TOWNE)
243-271



PROTEIN 1


PVIF_BIV06
VIRION INFECTIVITY FACTOR
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 106) (BIV)
42-78


PVIF_BIV27
VIRION INFECTIVITY FACTOR
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV)
42-78


PVIF_SIVGB
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (ISOLATE GBI)
46-78


PVIF_SIVMK
VIRION INFECTIVITY FACTOR
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) (SIV-MAC)
 82-111


PVIMP_EBV
PROBABLE INTEGRAL MEMBRANE
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIURS 4)
125-159



PROTEIN BBRF3


PVIMP_HCMVA
PROBABLE INTEGRAL MEMBRANE
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
 68-100



PROTEIN


PVIMP_HSV11
PROBABLE INTEGRAL MEMBRANE
HERPES SIMPLEX VIRUS (TYPE 1/STRAIN 17)
 83-114
136-171
250-



PROTEIN



282


PVIMP_HSVEB
PROBABLE INTEGRAL MEMBRANE
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
24-56
 93-127
145-
332-



PROTEIN



180
361


PVIMP_HSVSA
INTEGRAL MEMBRANE PROTEIN
HERPESVIRUS SAIMIRI (STRAIN 11)
 76-111


PVINT_SSV1
PROBABLE INTEGRASE
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
253-291


PVJ05_VACCC
PROTEIN J5
VACCINIA VIRUS (STRAIN COPENHAGEN)
54-85


PVJ05_VACCV
PROTEIN J5
VACCINIA VIRUS (STRAIN WR)
54-85


PVJ05_VARV
PROTEIN J5
VARIOLA VIRUS
54-85


PVK04_VACCC
PROTEIN K4
VACCINIA VIRUS (STRAIN COPENHAGEN)
 87-120


PVK04_VACCV
PROTEIN K4
VACCINIA VIRUS (STRAIN WR)
 87-120


PVK05_VACCC
PROTEIN K5
VACCINIA VIRUS (STRAIN COPENHAGEN)
 74-103


PVK05_VACCV
PROTEIN K5
VACCINIA VIRUS (STRAIN WR)
 87-116


PVL02_VACCC
PROTEIN L2
VACCINIA VIRUS (STRAIN COPENHAGEN)
39-76


PVL02_VACCV
PROTEIN L2
VACCINIA VIRUS (STRAIN WR)
39-76


PVL02_VARV
PROTEIN L2
VARIOLA VIRUS
39-76


PVL03_VACCC
PROTEIN L3
VACCINIA VIRUS (STRAIN COPENHAGEN)
292-322


PVL03_VACCV
PROTEIN L3
VACCINIA VIRUS (STRAIN WR)
292-322


PVL03_VARV
PROTEIN L3
VARIOLA VIRUS
291-321


PLV05_VACCV
PROTEIN L5
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
16-45


PVL05_VARV
PROTEIN L5
VARIOLA VIRUS
16-45


PVL1_HPV5B
PROBABLE L1 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
373-406


PVL2_CRPVK
PROBABLE L2 PROTEIN
COTTONTAIL RABBIT (SHOPE) PAPILLOMAVIRUS (STRAIN KANSAS) (CRPV)
26-57


PVL2_HPV05
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5
27-57


PVL2_HPV08
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 8
27-57


PVL2_HPV1A
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 1A
26-56


PVL2_HPV39
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 39
29-59
285-313


PVL2_HPV42
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 42
344-379


PVL2_HPV47
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 47
26-57


PVL2_HPV51
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 51
29-59


PVL2_HPV5B
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE 5B
27-57


PVL2_HPVME
PROBABLE L2 PROTEIN
HUMAN PAPILLOMAVIRUS TYPE ME180
29-59


PVL2_PCPV1
PROBABLE L2 PROTEIN
PYGMY CHIMPANZEE PAPILLOMAVIRUS TYPE 1
29-59


PVL96_IRV1
L96 PROTEIN
TIPULA IRIDESCENT VIRUS (TIV) (INSECT IRIDESCENT VIRUS TYPE 1)
144-177
686-718


PVM1_REOVD
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
280-318
324-361



PROTEIN MU-2


PVM1_REOVL
MINOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
280-318



PROTEIN MU-2


PVM21_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
168-199



PROTEIN MU-1/MU-1C


PVM22_REOVD
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
168-199



PROTEIN MU-1/MU-1C


PVM2_REOVJ
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 2/STRAIN D5/JONES)
168-199



PROTEIN MU-1/MU-1C


PVM2_REOVL
MAJOR VIRION STRUCTURAL
REOVIRUS (TYPE 1/STRAIN LANG)
168-199



PROTEIN MU-1/MU-1C


PVM3_REOVD
MAJOR NONSTRUCTURAL
REOVIRUS (TYPE 3/STRAIN DEARING)
333-364



PROTEIN MU-NS


PVMAT_SV5
MATRIX PROTEIN
SIMIAN VIRUS 5 (STRAIN W3) (SV5)
308-342


PVMAT_TRTV
MATRIX PROTEIN
TURKEY RHINOTRACHEITIS VIRUS (TRTV)
122-150


PVMEI_CVBM
E1 GLYCOPROTEIN
BOVINE CORONAVIRUS (STRAIN MEBUS)
 64-102


PVMEI_CVHOC
E1 GLYCOPROTEIN
HUMAN CORONAVIRUS (STRAIN OC43)
 64-102


PVMEI_CVMA5
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
 65-103


PVMEI_CVMJH
E1 GLYCOPROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
 65-103


PVMEI_CVTKE
E1 GLYCOPROTEIN
TURKEY ENTERIC CORONAVIRUS (TCV)
 64-102


PVMEI_IBVB
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE) (IBV)
 73-101


PVMEI_IBVB2
E1 GLYCOPROTEIN
AVIAN INFECTIOUS BRONCHITIS VIRUS (STRAIN BEAUDETTE M42) (IBV)
 73-101


PVMEM_EBV
PROBABLE MEMBRANE PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
178-213


PVMP_CERV
MOVEMENT PROTEIN
CARNATION ETCHED RING VIRUS (CERV)
 93-126


PVMP_SOCMV
MOVEMENT PROTEIN
SOYBEAN CHLOROTIC MOTTLE VIRUS
66-98
273-303


PYMSA_HPBDB
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS (BROWN SHANGHAI DUCK ISOLATE S5) (DHBV)
201-238
269-302



PRECURSOR


PVMSA_HPBDC
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS (STRAIN CHINA) (DHBV)
194-227
268-301



PRECURSOR


PVMSA_HPBDU
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS (DHBV)
157-190
231-264



PRECURSOR


PVMSA_HPBDW
MAJOR SURFACE ANTIGEN
DUCK HEPATITIS B VIRUS (WHITE SHANGHAI DUCK ISOLATE S31) (DHBV)
194-228
269-302



PRECURSOR


PVMSA_HPBGS
MAJOR SURFACE ANTIGEN
GROUND SQUIRREL HEPATITIS VIRUS (GSHV)
209-243
271-307



PRECURSOR


PVMSA_HPBHE
MAJOR SURFACE ANTIGEN
HERON HEPATITIS B VIRUS
159-195
236-269



PRECURSOR


PVMSA_HPBV0
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS
70-98


PVMSA_HPBV2
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW2)
244-272



PRECURSOR


PVMSA_HPBV4
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADR4)
244-272



PRECURSOR


PVMSA_HPBV9
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN 991)
244-272



PRECURSOR


PVMSA_HPBVA
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (STRAIN ALPHA1)
233-261



PRECURSOR


PVMSA_HPBVD
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AD)
70-98


PVMSA_HPBVI
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN INDONESIA/PIDW420)
233-261



PRECURSOR


PVMSA_HPBVJ
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ABW/STRAIN JAPAN/PJDW233)
233-261



PRECURSOR


PVMSA_HPBVL
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (STRAIN LSH/CHIMPANZEE ISOLATE)
233-261



PRECURSOR


PVMSA_HPBVN
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADR/STRAIN NC-1)
70-98


PVMSA_HPBVO
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN OKINAWA/PODW282)
233-161



PRECURSOR


PVMSA_HPBVP
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW/STRAIN PHILIPPINO/PFDW294)
244-272



PRECURSOR


PVMSA_HPBVR
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADR)
244-272



PRECURSOR


PVMSA_HPBVS
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AR)
70-98


PVMSA_HPBVW
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADW)
233-261



PRECURSOR


PVMSA_HPBVY
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE AYW)
233-261



PRECURSOR


PVMSA_HPBVZ
MAJOR SURFACE ANTIGEN
HEPATITIS B VIRUS (SUBTYPE ADYW)
233-261



PRECURSOR


PVMSA_WHV1
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 1
207-241
269-305



PRECURSOR


PVMSA_WHV59
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 59
212-246
274-310



PRECURSOR


PVMSA_WHV7
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 7
212-246
274-310



PRECURSOR


PVMSA_WHV8
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS 8
212-246
274-310



PRECURSOR


PVMSA_WHV81
PROBABLE MAJOR SURFACE
WOODCHUCK HEPATITIS VIRUS 8 (INFECTIOUS CLONE)
212-246
274-305



ANTIGEN PRECURSOR


PVMSA_WHVW6
MAJOR SURFACE ANTIGEN
WOODCHUCK HEPATITIS VIRUS W64 (ISOLATE PWS23)
125-161



PRECURSOR 1


PVMT2_IAZII
MATRIX (M2) PROTEIN
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
10-42


PVMT8_MYXVL
M-T8 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
 5-34
141-170


PVMT9_MYXVL
MT-9 PROTEIN
MYXOMA VIRUS (STRAIN LAUSANNE)
246-282


PVN02_VACCC
PROTEIN N2
VACCINIA VIRUS (STRAIN COPENHAGEN)
31-68


PVN02_VACCV
PROTEIN N2
VACCINIA VIRUS (STRAIN WR)
31-68


PVN02_VARV
PROTEIN N2
VARIOLA VIRUS
31-68


PVN34_ROTPC
NONSTRUCTURAL PROTEIN NS34
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
336-366


PVNCA_AAV2
DNA REPLICATION PROTEIN
ADENO-ASSOCIATED VIRUS 2 (AAV2)
163-196
365-401


PVNCS_PAVBO
PROBABLE NONCAPSID PROTEIN
BOVINE PARVOVIRUS (BPV)
180-217
346-377
439-



NS1



471


PVNS1_AHSV4
NONSTRUCTURAL PROTEIN NS1
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCINE)
351-380


PVNS1_IAALA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ALASKA/6/77)
114-144


PVNS1_IAANN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/ANN ARBOR/6/60)
114-144


PVNS1_IACHI
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHILE/1/83)
114-144


PVNS1_IACKG
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/GERMANY/N/49)
107-144


PVNS1_IACKJ
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/CHICKEN/JAPAN/24)
104-141


PVNS1_IADA2
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ALBERTA/60/76)
107-144


PVNS1_IADE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/ENGLAND/1/56)
104-141


PVNS1_IADU3
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/DUCK/UKRAINE/1/63)
104-141


PVNS1_IAFOM
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT MONMOUTH/1/47)
114-144


PVNS1_IAFOW
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FORT WARREN/1/50)
114-144


PVNS1_IAFPR
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/FOWL PLAGUE VIRUS/ROSTOCK/34)
107-144


PVNS1_IALE1
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/134/57)
114-144


PVNS1_IALEN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/LENINGRAD/54/1)
114-144


PVNS1_IAMA6
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/ALBERTA/88/76)
107-144


PVNS1_IAMAN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6750/78)
107-144


PVNS1_IAMAO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MALLARD/NEW YORK/6874/78)
107-144


PVNS1_IAMYN
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/MYNAH/HANEDA-THAI/76)
104-141


PVNS1_IAP10
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/119/79)
107-144


PVNS1_IAP11
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/121/79)
107-144


PVNS1_IAP12
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/268/78)
107-144


PVNS1_IAP13
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PINTAIL/ALBERTA/358/79)
107-144


PVNS1_IAPUE
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/34)
114-144


PVNS1_IATKB
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/BETHLEHEM-GLILIT/1492-B/82)
107-144


PVNS1_IATKC
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TURKEY/CANADA/63)
107-144


PVNS1_IATRS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/SOUTH AFRICA/61)
104-141


PVNS1_IATRT
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/TERN/TURKMENIA/18/72)
107-144


PVNS1_IAUDO
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/UDORN/307/72)
114-144


PVNS1_IAUSS
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/USSR/90/77)
114-144


PVNS1_IAZ11
NONSTRUCTURAL PROTEIN NS1
INFLUENZA A VIRUS (STRAIN A/SWINE/IOWA/15/30)
107-144


PVNS1_INBPA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA B VIRUS (STRAIN B/PA/79)
266-295


PVNS1_INCAA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/ANN ARBOR/1/50)
222-255


PVNS1_INCCA
NONSTRUCTURAL PROTEIN NS1
INFLUENZA C VIRUS (STRAIN C/CALIFORNIA/78)
222-255


PVNS2_HRSVI
NONSTRUCTURAL PROTEIN 2
HUMAN RESPIRATORY SYNCYTIAL VIRUS (SUBGROUP B/STRAIN 18537)
20-49


PVNS2_HRSVA
NONSTRUCTURAL PROTEIN 2
HUMAN RESPIRATORY SYNCYTIAL VIRUS (STRAIN A2)
20-49


PVNS2_INBLE
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/LEE/40)
48-77


PVNS2_INBYA
NONSTRUCTURAL PROTEIN NS2
INFLUENZA B VIRUS (STRAIN B/YAMAGATA/1/73)
48-77


PVNS4_CVMS
NONSTRUCTURAL PROTEIN 4
MURINE CORONAVIRUS MHV (STRAIN S)
17-45


PVNS4_CVPFS
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (STRAIN FS77
 4-34


PVNS4_CVPPU
NONSTRUCTURAL PROTEIN 4
PORCINE TRANSMISSIBLE GASTROENTERITIS CORONAVIRUS (STRAIN PUR
 4-39


PVNS4_CVPRM
NONSTRUCTURAL PROTEIN 4
PORCINE RESPIRATORY CORONAVIRUS
 4-39


PVNST_CVMA5
30 KD NONSTRUCTURAL PROTEIN
MURINE CORONAVIRUS MHV (STRAIN A59)
45-80


PVNST_CVMJH
30 KD NONSTRUCTURAL PROTEIN
MURINE CORONAVIRUS MHV (STRAIN JHM)
49-84


PVNST_INCGL
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/GREAT LAKES/1167/54)
222-255


PVNST_INCJH
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/JOHANNESBURG/1/66)
222-255


PVNST_INCMI
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/MISSISSIPPI/80)
222-255


PVNST_INCYA
NONSTRUCTURAL PROTEINS NS1-NS2
INFLUENZA C VIRUS (STRAIN C/YAMAGATA/10/81)
222-255


PVNUA_PRVKA
PROBABLE NUCLEAR ANTIGEN
PSEUDORABIES VIRUS (STRAIN KAPLAN) (PRV)
756-784


PVNUC_DHVH
NUCLEOPROTEIN
DHORI VIRUS (STRAIN INDIAN/1313/64) (DHO)
297-331
441-470


PVNUC_IACKP
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/CHICKEN/PENNSYLVANIA/1/83)
354-388


PVNUC_IAHLO
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE /LONDON/1416/73)
354-388


PVNUC_IAHPR
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE /PRAGUE/1/56)
354-388


PVNUC_IAHTE
NUCLEOPROTEIN
INFLUENZA A VIRUS (STRAIN A/EQUINE /TENNESSEE/5/86)
354-388


PVNUC_MABVM
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN MUSOKE)
16-46


PVNUC_MABVP
NUCLEOPROTEIN
MARBURG VIRUS (STRAIN POPP)
16-46


PVO01_VACCC
PROTEIN O1
VACCINIA VIRUS (STRAIN COPENHAGEN)
511-539
550-581


PVO01_VARV
PROTEIN O1
VARIOLA VIRUS
511-539


PVOR1_NMV
186 KD PROTEIN
NARCISSUS MOSAIC VIRUS (NMV)
121-150
641-671


PVOR1_PVMR
223 KD PROTEIN
POTATO VIRUS M (STRAIN RUSSIAN) (PVM)
1667-1703


PVOR1_SMYEA
150 KD PROTEIN
STRAWBERRY MILD YELLOW EDGE-ASSOCIATED VIRUS (SMYEAV)
121-153


PVP03_HSVSA
PROBABLE MEMBRANE ANTIGEN 3
HERPESVIRUS SAIMIRI (STRAIN 11)
462-493


PVP10_NPVAC
P10 PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
 4-38


PVP10_NPVOP
P10 PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)
 4-38


PVP10_RBSDV
PROTEIN S10
RICE BLACK STREAKED DWARF VIRUS (RBSDV)
260-291


PVP19_HSVEB
CAPSID ASSEMBLY AND DNA
EQUINE HERPESVIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
239-268
287-325



MATURATION PROTEIN


PVP23_HCMVA
PROBABLE CAPSID PROTEIN VP23
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
141-172


PVP23_HSV6U
PROBABLE CAPSID PROTEIN VP23
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN UGANDA-1102)
46-79
206-238


PVP23_HSVEB
PROBABLE CAPSID PROTEIN VP23
EQUINE HERPES VIRUS TYPE 1 (STRAIN AB4P) (EHV-1)
18-48


PVP23_VZVD
PROBABLE CAPSID PROTEIN VP23
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV)
224-253


PVP2_AHSV4
OUTER CAPSID PROTEIN VP2
AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4/STRAIN VACCINE)
408-441


PVP2_BTV10
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
649-683


PVP2_BTV11
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
558-586
649-683


PVP2_BTV17
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYFE 17/ISOLATE USA)
391-424
564-593


PVP2_BTV1A
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
654-688


PVP2_BTV1S
OUTER CAPSID PROTEIN VP2
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
654-688


PVP2_EHDV1
OUTER CAPSID PROTEIN VP2
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) (EHDV-1)
878-915


PVP2_ROTBR
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN RF)
334-367
522-557


PVP2_ROTBU
RNA-BINDING PROTEIN VP2
BOVINE ROTAVIRUS (STRAIN UK)
334-367
523-558


PVP2_ROTHW
RNA-BINDING PROTEIN VP2
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
342-377
532-567


PVP2_ROTPC
RNA-BINDING PROTEIN VP2
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
514-549
589-617
811-







841


PVP2_ROTS1
RNA-BINDING PROTEIN VP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
335-368
523-558


PVP35_VACCC
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN COPENHAGEN)
278-311



PROTEIN P35


PVP35_VACCV
IMMUNODOMINANT ENVELOPE
VACCINIA VIRUS (STRAIN WR)
278-311



PROTEIN P35


PVP35_VARV
IMMUNODOMINANT ENVELOPE
VARIOLA VIRUS
279-312



PROTEIN P35


PVP39_NPVOP
MAJOR CAPSID PROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)
107-141


PVP3_EHDV1
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) (EHDV-1)
383-412
734-770


PVP3_EHDVA
VP3 CORE PROTEIN
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS
383-412
734-770


PVP3_RDV
MAJOR 114 KD STRUCTURAL
RICE DWARF VIRUS (RDV)
297-330



PROTEIN


PVP3_ROTSI
INNER CORE PROTEIN VP3
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
652-688


PVP40_EBV
CAPSID PROTEIN P40
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
429-457


PVP40_HSVSA
CAPSID PROTEIN P40
HERPESVIRUS SAIMIRI (STRAIN 11)
119-152


PVP40_ILTVT
CAPSID PROTEIN P40
INFECTIOUS LARYNGOTRACHEITIS VIRUS (STRAIN THORNE V882) (ILTV)
 84-119


PVP40_VZVD
CAPSID PROTEIN P40
VARICELLA-ZOSTER VIRUS (STRAIN DUMAS) (VZV
485-516


PVP47_NPVAC
VIRAL TRANSCRIPTION
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
239-270



REGULATOR P47


PVP4A_VACCC
MAJOR CORE PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
553-591



P4A PRECURSOR


PVP4A_VACCV
MAJOR CORE PROTEIN
VACCINIA VIRUS (STRAIN WR)
553-591



P4A PRECURSOR


PVP4A_VARV
MAJOR CORE PROTEIN
VARIOLA VIRUS
554-592



P4A PRECURSOR


PVP4A_ROTGI
OUTER CAPSID PROTEIN VP4
ROTAVIRUS (GROUP B/STRAIN IDIR)
 93-122
468-499


PVP4_WTV
NONSTRUCTURAL PROTEIN PNS4
WOUND TUMOR VIRUS (WTV)
278-308
624-659


PVP5_BRD
OUTER CAPSID PROTEIN VP5
BROADHAVEN VIRUS (BRD)
 96-133
295-326


PVP5_BTV1A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
295-324


PVP5_BTV1S
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 1/SOUTH AFRICA)
295-324


PVP5_BTV2A
OUTER CAPSID PROTEIN VP5
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
295-324


PVP5_EHDV1
OUTER CAPSID PROTEIN VP5
EPIZOOTIC HEMORRHAGIC DISEASE VIRUS (SEROTYPE 1) (EHDV-1)
290-325


PVP5_WTV
OUTER COAT PROTEIN P5
WOUND TUMOR VIRUS (WTV)
691-719


PVP61_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
159-187


PVP62_BTV10
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
155-183
210-245


PVP62_MRDV
PROBABLE NONSTRUCTURAL
MAIZE ROUGH DWARF VIRUS (MRDV)
25-61
222-257



36.3 KD PROTEIN


PVP64_NPVOP
MAJOR ENVELOPE GLYCOPROTEIN
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)
285-313



PRECURSOR


PVP67_NPVAC
MAJOR ENVELOPE GLYCOPROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
281-316



PRECURSOR


PVP67_NPVGM
MAJOR ENVELOPE GLYCOPROTEIN
GALLERIA MELLONELLA NUCLEAR POLYHEDROSIS VIRUS (GMNPV)
198-233


PVP6_BTV11
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
155-183


PVP6_BTV17
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
155-183


PVP6_BTV1S
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
159-187


PVP6_BTV2A
VP6 PROTEIN
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
131-159


PVP6_WTV
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (WTV)
180-209


PVP6_WTVNJ
STRUCTURAL PROTEIN P6
WOUND TUMOR VIRUS (STRAIN NJ) (WTV)
180-209


PVP79_NPVAC
79 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
405-442


PVP7_WTV
NONSTRUCTURAL PROTEIN PNS7
WOUND TUMOR VIRUS (WTV)
454-490


PVP87_NPVOP
CAPSID PROTEIN P87
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)
 77-112


PVP8_BTV10
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 10/ISOLATE USA)
104-139


PVP8_BTV11
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 11/ISOLATE USA)
104-139


PVP8_BTV13
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 13/ISOLATE USA)
104-139


PVP8_BTV17
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 17/ISOLATE USA)
104-139


PVP8_BTV1A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE AUSTRALIA)
104-139


PVP8_HTV1S
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 1/ISOLATE SOUTH AFRICA)
104-139


PVP8_BTV2A
NONSTRUCTURAL PROTEIN P8
BLUETONGUE VIRUS (SEROTYPE 2/ISOLATE USA)
104-139


PVP8_RDV
OUTER CAPSID PROTEIN P8
RICE DWARF VIRUS (RDV)
374-412


PVP8_WTV
OUTER CAPSID PROTEIN P8
WOUND TUMOR VIRUS (WTV)
164-195
379-412


PVPHE_NPVAC
29 KD POLYHEDRAL ENVELOPE
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
145-173



PROTEIN


PVPHE_NPVOP
32 KD POLYHEDRAL ENVELOPE
ORGYIA PSEUDOTSUGATA MULTICAPSID POLYHEDROSIS VIRUS (OPMNPV)
122-151



PROTEIN


PVPR_HV1A2
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (ARV2/SF2 ISOLATE) (HIV-1)
37-74


PVPR_HV2BE
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE BEN) (HIV-2)
41-73


PVPR_HV2CA
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE CAM2) (HIV-2)
41-73


PVPR_HV2D1
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D194) (HIV-2)
41-73


PVPR_HV2D2
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE D205,7) (HIV-2)
41-73


PVPR_HV2NZ
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE NIH-Z) (HIV-2)
41-73


PVPR_HV2RO
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE ROD) (HIV-2)
41-73


PVPR_HV2SB
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 (ISOLATE SBLISY) (HIV-2)
41-73


PVPR_HV2ST
VPR PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 2(ISOLATE ST) (HIV-2)
40-72


PVPR_SIVCZ
VPR PROTEIN
CHIMPANZEE IMMUNODEFICIENCY VIRUS (SIV(CPZ)) (CIV)
37-74


PVPR_SIVMI
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (MM142-83 ISOLATE) (SIV-MAC)
37-69


PVPR_SIVMK
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K6W ISOLATE) (SIV-MAC)
37-69


PVPR_SIVML
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (K78 ISOLATE) (SIV-MAC)
37-69


PVPR_SIVS4
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (F236/SMH4 ISOLATE) (SOOTY MANGA
37-69


PVPR_SIVSP
VPR PROTEIN
SIMIAN IMMUNODEFICIENCY VIRUS (PBJ/BC13 ISOLATE) (SOOTY MANGABE
37-69


PVPU_HV1B1
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH10 ISOLATE,HXB3 ISOLATE)
 3-33


PVPU_HV1B8
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BH8 ISOLATE) (HIV-I)
 4-33


PVPU_HV1BN
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRAIN ISOLATE) (HIV-1)
 3-34


PVPU_HV1BR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (BRU ISOLATE) (HIV-1)
 3-33


PVPU_HV1H2
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (HXB2 ISOLATE) (HIV-1)
 4-33


PVPU_HV1JR
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (JRCSF ISOLATE) (HIV-1)
 3-34


PVPU_HV1PV
VPU PROTEIN
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (PV22 ISOLATE) (HIV-1)
 3-33


PVPU_JSRV
VPU PROTEIN
SHEEP PULMONARY ADENOMATOSIS VIRUS
116-154


PVPX_LDV
VPX PROTEIN
LACTATE DEHYDROGENASE-ELEVATING VIRUS (LDV)
25-55


PVPY_BIV2
ORF-Y PROTEIN
BOVINE IMMUNODEFICIENCY VIRUS (ISOLATE 127) (BIV)
35-71


PVRNA_BSMV
ALPHA-A PROTEIN
BARLEY STRIPE MOSAIC VIRUS (BSMV)
290-319
676-705


PVS05_ROTHI
NONSTRUCTURAL PROTEIN NCVP2
HUMAN ROTAVIRUS (STRAIN IGV-80-3)
198-230


PVS05_ROTPC
NONSTRUCTURAL PROTEIN NS53
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
88-119
358-392


PVS05_ROTSI
NONSTRUCTURAL PROTEIN NCVP2
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
315-347


PVS06_ROTBR
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN RF)
55-92


PVS06_ROTBS
VP6 PROTEIN
BOVINE ROTAVIRUS (GROUP C/STRAIN SHINTOKU)
64-92
312-340


PVS06_ROTBU
VP6 PROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
55-92


PVS06_ROTEF
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN FI-14)
55-92


PVS06_ROTEH
VP6 PROTEIN
EQUINE ROTAVIRUS (STRAIN H-2)
55-92


PVS06_ROTH1
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN 1076)
55-92


PVS06_ROTHC
VP6 PROTEIN
HUMAN ROTAVIRUS (GROUP C/STRAIN BRISTOL)
64-92
312-340


PVS06_ROTHS
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 2/STRAIN S2)
55-92


PVS06_ROTHW
VP6 PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
55-92
313-349


PVS06_ROTPC
VP6 PROTEIN
PORCINE ROTAVIRUS (GROUP C/STRAIN COWDEN)
64-92


PVS06_ROTPG
VP6 PROTEIN
PORCINE ROTAVIRUS (STRAIN GOTTFRIED)
55-92
313-349


PVS06_ROTS1
VP6 PROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
55-92
313-349


PVS08_ROTS1
NONSTRUCTURAL PROTEIN NCVP4
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
274-302


PVS09_ROTHT
GLYCOPROTEIN VP7
HUMAN ROTAVIRUS (SEROTYPE 4/STRAIN ST. THOMAS 3)
131-159


PVS09_ROTPB
GLYCOPROTEIN VP7
PORCINE ROTAVIRUS (SEROTYPE 4/STRAIN BEN-144)
131-159


PVS10_ROTBN
NONSTRUCTURAL GLYCOPROTEIN
BOVINE ROTAVIRUS (STRAIN NCDV)
52-89



NCVP5


PVS10_ROTBU
NONSTRUCTURAL GLYCOPROTEIN
BOVINE ROTAVIRUS (STRAIN UK)
52-89



NCVP5


PVS10_ROTH2
NONSTRUCTURAL GLYCOPROTEIN
HUMAN ROTAVIRUS (STRAIN A28)
52-89



NCVP5


PVS10_ROTH7
NONSTRUCTURAL GLYCOPROTEIN
HUMAN ROTAVIRUS (STRAIN A64/CLONE 2)
52-89



NCVP5


PVS10_ROTH8
NONSTRUCTURAL GLYCOPROTEIN
HUMAN ROTAVIRUS (STRAIN A64/CLONE 6)
52-89



NCVP5


PVS10_ROTHW
NONSTRUCTURAL GLYCOPROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
52-89



NCVP5


PVS10_ROTS1
NONSTRUCTURAL GLYCOPROTEIN
SIMIAN 11 ROTAVIRUS (STRAIN SA11)
52-89



NCVP5


PVSI1_ROTHW
MINOR OUTER CAPSID PROTEIN
HUMAN ROTAVIRUS (SEROTYPE 1/STRAIN WA)
 99-130


PVSI1_REOVJ
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 2/STRAIN D5/JONES)
346-384


PVSI1_REOVL
SIGMA 1 PROTEIN PRECURSOR
REOVIRUS (TYPE 1/STRAIN LANG)
110-147


PVT1_SFVKA
PROTEIN T1 PRECURSOR
SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)
147-182


PVT2_MYXVL
TUMOR NECROSIS FACTOR
MYXOMA VIRUS (STRAIN LAUSANNE)
261-290



SOLUBLE RECEPTOR PRECUR


PVT2_SFVKA
TUMOR NECROSIS FACTOR
SHOPE FIBROMA VIRUS (STRAIN KASZA) (SFV)
211-249



SOLUBLE RECEPTOR PRECUR


PVT3A_CAPVI
PROTEIN T3A
CAPRIPOXVIRUS (STRAIN INS-1)
116-150


PVTER_EBV
PROBABLE DNA PACKAGING
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
166-199
505-543



PROTEIN


PVTER_HCMVA
PROBABLE DNA PACKAGING
HUMAN CYTOMEGALOVIRUS (STRAIN AD169)
176-209



PROTEIN


PVTER_HSV11
PROBABLE DNA PACKAGING
ICTALURID HERPESVIRUS 1 (CHANNEL CATFISH VIRUS) (CCV)
756-788



PROTEIN


PVX_SEND6
X PROTEIN
SENDAI VIRUS (STRAIN 6/94)
57-93


PY104_ADE07
HYPOTHETICAL 10.4 KD
HUMAN ADENOVIRUS TYPE 7
55-83



EARLY PROTEIN


PY10K_MSVS
HYPOTHETICAL 10.9 KD
MAIZE STREAK VIRUS (SOUTH-AFRICAN ISOLATE) (MSV)
24-54



PROTEIN


PY10K_WDV
HYPOTHETICAL 10 KD
WHEAT DWARF VIRUS (WDV)
22-59



PROTEIN


PY119_SSV1
HYPOTHETICAL 11.9 KD
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
29-64



PROTEIN


PY11K_PASV
HYPOTHETICAL 11.9 KD
PANICUM STREAK VIRUS
29-61



PROTEIN (ORF VI)


PY11K_ROTS1
HYPOTHETICAL 11 KD
SIMIAN 11 ROTAVIRUS (STRAIN S11)
53-87



PROTEIN IN SEGMENT S11


PY11K_TYDVA
HYPOTHETICAL 11.2 KD PROTEIN
TOBACCO YELLOW DWARF VIRUS (STRAIN AUSTRALIA) (TYDV)
28-62


PY14K_NPVAC
HYPOTHETICAL 13.8 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
 65-101



IN 39 KD PROTEIN 5′REG


PY18K_SSV1
HYPOTHETICAL 18.0 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
100-132



(ORF B-166)


PY20K_SSV1
HYPOTHETICAL 20.4 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
129-167



(ORF B-178)


PY21K_MSVN
HYPOTHETICAL 21.7 KD PROTEIN
MAIZE STREAK VIRUS (NIGERIAN ISOLATE) (MSV)
122-155


PY2_SOCMV
HYPOTHETICAL PROTEIN 2 (ORF II)
SOYBEAN CHLOROTIC MOTTLE VIRUS
 99-137


PY38K_NPVAC
HYPOTHETICAL 37.7 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
250-282



(ORF 2)


PY85K_SSV1
HYPOTHETICAL 85.7 KD PROTEIN
SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
274-312
543-580



(ORF C-792)


PYB13_FOWPM
HYPOTHETICAL BAMHI-ORF13
FOWLPOX VIRUS (ISOLATE HP-438[MUNICH])
114-150



PROTEIN (FRAGMENT)


PYDH1_HSVSC
HYPOTHETICAL 28.7 KD PROTEIN
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
206-244



IN DHFR 3′REGION (ORF


PYDH3_HSVSC
HYPOTHETICAL 9.5 KD PROTEIN
HERPESVIRUS SAIMIRI (SUBGROUP C/STRAIN 488)
69-97



IN DHFR 3′REGION (ORF 3)


PYEC4_EBV
HYPOTHETICAL EC-RF4 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
34-68


PYIO1_CVBM
HYPOTHETICAL PROTEIN IORF1
BOVINE CORONAVIRUS
 84-122


PYIOR_CVBF
HYPOTHETICAL PROTEIN
BOVINE CORONAVIRUS (STRAIN F15)
41-75
137-165



IN NUCLEOCAPSID ORF (IORF)


PYIOR_CVBM
HYPOTHETICAL PROTEIN IN
BOVINE CORONAVIRUS (STRAIN MEBUS)
41-74
137-165



NUCLEOCAPSID ORF (IORF)


PYIOR_CVTKE
HYPOTHETICAL PROTEIN IN
TURKEY ENTERIC CORONAVIRUS (TCV)
41-74
137-165



NUCLEOCAPSID ORF (IORF)


PYKR2_EBV
HYPOTHETICAL BKRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
 67-100


PYMR2_EBV
BMRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
250-284


PYOR1_COYMV
HYPOTHETICAL 23 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS (COYMV)
 93-130
166-198



(ORF 1)


PYOR2_COYMV
HYPOTHETICAL 15 KD PROTEIN
COMMELINA YELLOW MOTTLE VIRUS (COYMV)
23-56



(ORF 2)


PYOR3_PVXXC
HYPOTHETICAL 12 KD PROTEIN
POTATO VIRUS X (STRAIN XC) (PVX)
 7-39



(ORF 3) (FRAGMENT)


PYOR3_WCMVM
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN M) (WCMV)
63-94



(ORF 3)


PYOR3_WCMVO
HYPOTHETICAL 13 KD PROTEIN
WHITE CLOVER MOSAIC VIRUS (STRAIN O) (WCMV)
64-95



(ORF 3)


PYOR5_ADEG1
HYPOTHETICAL 31.5 KD PROTEIN
AVIAN ADENOVIRUS GAL1
237-272



(ORF 5)


PYORG_TTV1
HYPOTHETICAL 7.1 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) (TTV1)
 5-34


PYORM_TTV1
HYPOTHETICAL 38.6 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) (TTV1)
233-263


PYORP_TTV1
HYPOTHETICAL 20.2 KD PROTEIN
THERMOPROTEUS TENAX VIRUS 1 (STRAIN KRA1) (TTV1)
 91-124


PYP24_RTBV
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (RTBV)
104-133
159-191



(ORF 1)


PYP24_RTBVP
HYPOTHETICAL P24 PROTEIN
RICE TUNGRO BACILLIFORM VIRUS (ISOLATE PHILIPPINES) (RTBV)
104-133
159-191



(ORF 1)


PYP47_NPVAC
HYPOTHETICAL 43.5 KD PROTEIN
AUTOGRAPHA CALIFORNICA NUCLEAR POLYHEDROSIS VIRUS (ACMNPV)
23-51



IN P47 3′REGION


PYRF5_HSV6G
HYPOTHETICAL PROTEIN RF5
HERPES SIMPLEX VIRUS (TYPE 6/STRAIN GS)
180-216


PYRR2_EBV
HYPOTHETICAL BRRF2 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
13-42


PYSR1_EBV
HYPOTHETICAL BSRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
 92-120


PYTR1_EBV
HYPOTHETICAL BTRF1 PROTEIN
EPSTEIN-BARR VIRUS (STRAIN B95-8) (HUMAN HERPESVIRUS 4)
306-336


PYVAE_VACCC
HYPOTHETICAL 18.2 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
21-53


PYVAL_VACCV
HYPOTHETICAL 9.9 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
21-49


PYVBC_VACCC
HYPOTHETICAL 10.8 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
22-53


PYVDG_VACCV
HYPOTHETICAL 10.4 KD PROTEIN
VACCINIA VIRUS (STRAIN WR), AND VACCINIA VIRUS (STRAIN COPENHAGEN)
31-64


PYVEF_VACCC
HYPOTHETICAL 12.9 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 8-42


PYVFC_VACCC
HYPOTHETICAL 11.6 KD PROTEIN
VACCINIA VIRUS (STRAIN COPENHAGEN)
 7-35


PZNFP_LYCVA
ZINC FINGER PROTEIN
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN ARMSTRONG)
29-57


PZNFP_LYCVP
ZINC FINGER PROTEIN (FRAGMENT)
LYMPHOCYTIC CHORIOMENINGITIS VIRUS (STRAIN PASTEUR)
 8-32
















TABLE XV





RESPIRATORY SYNCYTIAL VIRUS DP107 F2 REGION ANALOG (SEQ ID NO:16)


CARBOXY TRUNCATIONS*

















X-YTS-Z



X-YTSV-Z



X-YTSVI-Z



X-YTSVIT-Z



X-YTSVITI-Z



X-YTSVITIE-Z



X-YTSVITIEL-Z



X-YTSVITIELS-Z



X-YTSVITIELSN-Z



X-YTSVITIELSNI-Z



X-YTSVITIELSNIK-Z



X-YTSVITIELSNIKE-Z



X-YTSVITIELSNIKEN-Z



X-YTSVITIELSNIKENK-Z



X-YTSVITIELSNIKENKC-Z



X-YTSVITIELSNIKENKCN-Z



X-YTSVITIELSNIKENXCNG-Z



X-YTSVITIELSNIKENKCNGT-Z



X-YTSVITIELSNIKENKCNGTD-Z



X-YTSVITIELSNIKENKCNGTDA-Z



X-YTSVITIELSNIKENKCNGTDAK-Z



X-YTSVITIELSNIKENKCNGTDAKV-Z



X-YTSVITIELSNIKENKCNGTDAKVK-Z



X-YTSVITIELSNIKENKCNGTDAKVKL-Z



X-YTSVITIELSNIKENKCNGTDAKVKLI-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIK-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQ-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQE-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQEL-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELD-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDK-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKY-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYK-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVT-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTE-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTEL-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQ-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQL-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLL-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLM-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQ-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQS-Z



X-YTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



(SEQ ID NO:16)







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XVI





RESPIRATORY SYNCYTIAL VIRUS


F2 DP178/DP107 REGION ANALOG (SEQ ID NO:16) AMINO TRUNCATIONS*


















X-QST-Z




X-MQST-Z



X-LMQST-Z



X-LLMQST-Z



X-QLLMQST-Z



X-LQLLMQST-Z



X-ELQLLMQST-Z



X-TELQLLMQST-Z



X-VTELQLLMQST-Z



X-AVTELQLLMQST-Z



X-NAVTELQLLMQST-Z



X-KNAVTELQLLMQST-Z



X-YKNAVTELQLLMQST-Z



X-KYKNAVTELQLLMQST-Z



X-DKYKNAVTELQLLMQST-Z



X-LDKYKNAVTELQLLMQST-Z



X-ELDKYKNAVTELQLLMQST-Z



X-QELDKYKNAVTELQLLMQST-Z



X-KQELDKYKNAVTELQLLMQST-Z



X-IKQELDKYKNAVTELQLLMQST-Z



X-LIKQELDKYKNAVTELQLLMQST-Z



X-KLIKQELDKYKNAVTELQLLMQST-Z



X-VKLIKQELDKYKNAVTELQLLMQST-Z



X-KVKLIKQELDKYKNAVTELQLLMQST-Z



X-AKVKLIKQELDKYKNAVTELQLLMQST-Z



X-DAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-TDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-GTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-NGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-CNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-KCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-NKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-ENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-KENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-IKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-NIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-SNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-LSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-ELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-IELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-TIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-ITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-VITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-SVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z



X-TSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMQST-Z







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XVII





RESPIRATORY SYNCYTIAL VIRUS F1 DP178


REGION ANALOG (SEQ ID NO:17) CARBOXY TRUNCATIONS*

















X-FYD-Z



X-FYDP-Z



X-FYDPL-Z



X-FYDPLV-Z



X-FYDPLVF-Z



X-FYDPLVFP-Z



X-FYDPLVFPS-Z



X-FYDPLVFPSD-Z



X-FYDPLVFPSDE-Z



X-FYDPLVFPSDEF-Z



X-FYDPLVFPSDEFD-Z



X-FYDPLVFPSDEFDA-Z



X-FYDPLVFPSDEFDAS-Z



X-FYDPLVFPSDEFDASI-Z



X-FYDPLVFPSDEFDASIS-Z



X-FYDPLVFPSDEFDASISQ-Z



X-FYDPLVFPSDEFDASISQV-Z



X-FYDPLVFPSDEFDASISQVN-Z



X-FYDPLVFPSDEFDASISQVNE-Z



X-FYDPLVFPSDEFDASISQVNEK-Z



X-FYDPLVFPSDEFDASISQVNFKI-Z



X-FYDPLVFPSDEFDASISQVNLKIN-Z



X-FYDPLVFPSDEFDASISQVNEKINQ-Z



X-FYDPLVFPSDEFDASISQVNEKINQS-Z



X-FYDPLVFPSDEFDASISQVNEKINQSL-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLA-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAF-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFI-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIR-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRK-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKS-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSD-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDE-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDEL-Z



X-FYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z



(SEQ ID NO:17)







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XIX





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP178


ANALOG (SEQ ID NO:18) CARBOXY TRUNCATIONS*

















X-ITL-Z



X-ITLN-Z



X-ITLNN-Z



X-ITLNNS-Z



X-ITLNNSV-Z



X-ITLNNSVA-Z



X-ITLNNSVAL-Z



X-ITLNNSVALD-Z



X-ITLNNSVALDP-Z



X-ITLNNSVALDPI-Z



X-ITLNNSVALDPID-Z



X-ITLNNSVALDPIDI-Z



X-ITLNNSVALDPIDIS-Z



X-ITLNNSVALDPIDISI-Z



X-ITLNNSVALDPIDISIE-Z



X-ITLNNSVALDPIDISIEL-Z



X-ITLNNSVALDPIDISIELN-Z



X-ITLNNSVALDPIDISIELNK-Z



X-ITLNNSVALDPIDISIELNKA-Z



X-ITLNNSVALDPIDISIELNKAK-Z



X-ITLNNSVALDPIDISIELNKAKS-Z



X-ITLNNSVALDPIDISIELNKAKSD-Z



X-ITLNNSVALDPIDISIELNKAKSDL-Z



X-ITLNNSVALDPIDISIELNKAKSDLE-Z



X-ITLNNSVALDPIDISIELNKAKSDLEE-Z



X-ITLNNSVALDPIDISIELNKAKSDLEES-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESK-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKE-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEW-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWI-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIR-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRR-Z



X-ITLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z



(SEQ ID NO:18)







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XVIII





RESPIRATORY SYNCYTIAL VIRUS F1 DP178


REGION ANALOG (SEQ ID NO:17) AMINO TRUNCATIONS*


















X-DELL-Z




X-SDELL-Z



X-KSDELL-Z



X-RKSDELL-Z



X-IRKSDELL-Z



X-FIRKSDELL-Z



X-AFIRKSDELL-Z



X-LAFIRKSDELL-Z



X-SLAFIRKSDELL-Z



X-QSLAFIRKSDELL-Z



X-NQSLAFIRKSDELL-Z



X-INQSLAFIRKSDELL-Z



X-KINQSLAFIRKSDELL-Z



X-EKINQSLAFIRKSDELL-Z



X-NEKINQSLAFIRKSDELL-Z



X-VNEKINQSLAFIRKSDELL-Z



X-QVNEKINQSLAFIRKSDELL-Z



X-SQVNEKINQSLAFIRKSDELL-Z



X-ISQVNEKINQSLAFIRKSDELL-Z



X-SISQVNEKINQSLAFIRKSDELL-Z



X-ASISQVNEKINQSLAFIRKSDELL-Z



X-DASISQVNEKINQSLAFIRKSDELL-Z



X-FDASISQVNEKINQSLAFIRKSDELL-Z



X-EFDASISQVNEKINQSLAFIRKSDELL-Z



X-DEFDASISQVNEKINQSLAFIRKSDELL-Z



X-SDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-PSDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-FPSDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-VFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-LVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-PLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-DPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z



X-YDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL-Z







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XX





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP178


ANALOG (SEQ ID NO:18) AMINO TRUNCATIONS*


















X-RRS-Z




X-IRRS-Z



X-WIRRS-Z



X-EWIRRS-Z



X-KEWIRRS-Z



X-SKEWIRRS-Z



X-ESKEWIRRS-Z



X-EESKEWIRRS-Z



X-LEESKEWIRRS-Z



X-DLEESKEWIRRS-Z



X-SDLEESKEWIRRS-Z



X-KSDLEESKEWIRRS-Z



X-AKSDLEESKEWIRRS-Z



X-KAKSDLEESKEWIRRS-Z



X-NKAKSDLEESKEWIRRS-Z



X-LNKAKSDLEESKEWIRRS-Z



X-ELNKAKSDLEESKEWIRRS-Z



X-IELNKAKSDLEESKEWIRRS-Z



X-SIELNKAKSDLEESKEWIRRS-Z



X-ISIELNKAKSDLEESKEWIRRS-Z



X-DISIELNKAKSDLEESKEWIRRS-Z



X-IDISIELNKAKSDLEESKEWIRRS-Z



X-PIDISIELNKAKSDLEESKEWIRRS-Z



X-DPIDISIELNKAKSDLEESKEWIRRS-Z



X-LDPIDISIELNKAKSDLEESKEWIRRS-Z



X-ALDPIDISIELNKAKSDLEESKEWIRRS-Z



X-VALDPIDISIELNKAKSDLEESKEWIRRS-Z



X-SVALDPIDISIELNKAKSDLEESKEWIRRS-Z



X-NSVALDPIDISIELNKAKSDLEESKEWIRRS-Z



X-NNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z



X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z



X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRS-Z







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XXI





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP107


ANALOG (SEQ ID NO:19) CARBOXY TRUNCATIONS*

















X-ALG-Z



X-ALGV-Z



X-ALGVA-Z



X-ALGVAT-Z



X-ALGVATS-Z



X-ALGVATSA-Z



X-ALGVATSAQ-Z



X-ALGVATSAQI-Z



X-ALGVATSAQIT-Z



X-ALGVATSAQITA-Z



X-ALGVATSAQITAA-Z



X-ALGVATSAQITAAV-Z



X-ALGVATSAQITAAVA-Z



X-ALGVATSAQITAAVAL-Z



X-ALGVATSAQITAAVALV-Z



X-ALGVATSAQITAAVALVE-Z



X-ALGVATSAQITAAVALVEA-Z



X-ALGVATSAQITAAVALVEAK-Z



X-ALGVATSAQITAAVALVEAKQ-Z



X-ALGVATSAQITAAVALVEAKQA-Z



X-ALGVATSAQITAAVALVEAKQAR-Z



X-ALGVATSAQITAAVALVEAKQARS-Z



X-ALGVATSAQITAAVALVEAKQARSD-Z



X-ALGVATSAQITAAVALVEAKQARSDI-Z



X-ALGVATSAQITAAVALVEAKQARSDIE-Z



X-ALGVATSAQITAAVALVEAKQARSDIEK-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKL-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLK-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKE-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKEA-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAI-Z



X-ALGVATSAQITAAVALVEAKQARSDIEKLKEAIR-Z



(SEQ ID NO:19)







(*The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.








TABLE XXII





HUMAN PARAINFLUENZA VIRUS 3 F1 REGION DP107


ANALOG (SEQ ID NO:19) AMINO TRUNCATIONS*


















X-IRD-Z




X-AIRD-Z



X-EAIRD-Z



X-KEAIRD-Z



X-LKEAIRD-Z



X-KLKEAIRD-Z



X-EKLKEAIRD-Z



X-IEKLKEAIRD-Z



X-DIEKLKEAIRD-Z



X-SDIEKLKEAIRD-Z



X-RSDIEKLKEAIRD-Z



X-ARSDIEKLKEAIRD-Z



X-QARSDIEKLKEAIRD-Z



X-KQARSDIEKLKEAIRD-Z



X-AKQARSDIEKLKEAIRD-Z



X-EAKQARSDIEKLKEAIRD-Z



X-VEAKQARSDIEKLKEAIRD-Z



X-LVEAKQARSDIEKLKEAIRD-Z



X-ALVEAKQARSDIEKLKEAIRD-Z



X-VALVEAKQARSDIEKLKEAIRD-Z



X-AVALVEAKQARSDIEKLKEAIRD-Z



X-AAVALVEAKQARSDIEKLKEAIRD-Z



X-TAAVALVEAKQARSDIEKLKEAIRD-Z



X-ITAAVALVEAKQARSDIEKLKEAIRD-Z



X-QITAAVALVEAKQARSDIEKLKEAIRD-Z



X-AQITAAVALVEAKQARSDIEKLKEAIRD-Z



X-SAQITAAVALVEAKQARSDIEKLKEAIRD-Z



X-TSAQITAAVALVEAKQARSDIEKLKEAIRD-Z



X-ATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z



X-VATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z



X-GVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z



X-LGVATSAQITAAVALVEAKQARSDIEKLKEAIRD-Z







(The one letter amino acid code is used.)






Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.









TABLE XXIII





REPRESENTATIVE DP107/DP178 ANALOG ANTIVIRAL PEPTIDES

















Anti-Respiratory syncytial virus peptides




X-TSVITIELSNIKENKCNGTDAKVKLIKQELDKYKN-Z


X-SVITIELSNIKENKCNGTDAKVKLIKQELDKYKNA-Z


X-VITIELSNIKENKCNGTDAKVKLIKQELDKYKNAV-Z


X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z
(SEQ ID NO:20)


X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z
(SEQ ID NO:21)


X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z
(SEQ ID NO:22)


X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z
(SEQ ID NO:23)


X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z
(SEQ ID NO:24)


X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z
(SEQ ID NO:25)


X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z
(SEQ ID NO:26)


X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z
(SEQ ID NO:27)


X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z
(SEQ ID NO:28)


X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z
(SEQ ID NO:29)


X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z
(SEQ ID NO:30)


X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z
(SEQ ID NO:31)


X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z
(SEQ ID NO:32)


X-VAVSKVLHLEGEVNKIALLSTNKAVVSLSNGVS-Z


X-AVSKVLHLEGEVNKIALLSTNKAVVSLSNGVSV-Z


X-VSKVLHLEGEVNKIALLSTNKAVVSLSNGVSVL-Z


X-SKVLHLEGEVNKIALLSTNKAVVSLSNGVSVLT-Z


X-KVLHLEGEVNKIALLSTNKAVVSLSNGVSVLTS-Z


X-LEGEVNKIALLSTNKAVVSLSNGVSVLTSKVLD-Z


X-GEVNKIALLSTNKAVVSLSNGVSVLTSKVLDLK-Z


X-EVNKIALLSTNKAVVSLSNGVSVLTSKVLDLKN-Z


X-VNKIALLSTNKAVVSLSNGVSVLTSKVLDLKNY-Z


X-NKIALLSTNKAVVSLSNGVSVLTSKVLDLKNYI-Z


X-KIALLSTNKAVVSLSNGVSVLTSKVLDLKNYID-Z


X-IALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDK-Z


X-ALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQ-Z


Anti-human parainfluenza virus 3 peptides


X-TLNNSVALDPIDISIELNKAKSDLEESKEWIRRSN-Z
(SEQ ID NO:33)


X-LNNSVALDPIDISIELNKAKSDLEESKEWIRRSNQ-Z
(SEQ ID NO:34)


X-NNSVALDPIDISIELNKAKSDLEESKEWIRRSNQK-Z
(SEQ ID NO:35)


X-NSVALDPIDISIELNKAKSDLEESKEWIRRSNQKL-Z
(SEQ ID NO:36)


X-SVALDPIDISIELNKAKSDLEESKEWIRRSNQKLD-Z
(SEQ ID NO:37)


X-VALDPIDISIELNKAKSDLEESKEWIRRSNQKLDS-Z
(SEQ ID NO:38)


X-ALDPIDISIELNKAKSDLEESKEWIRRSNQKLDSI-Z
(SEQ ID NO:39)


X-LDPIDISIELNKAKSDLEESKEWIRRSNQKLDSIG-Z
(SEQ ID NO:40)


X-DPIDISIELNKAKSDLEESKEWIRRSNQKLDSIGN-Z
(SEQ ID NO:41)


X-PIDISIELNKAKSDLEESKEWIRRSNQKLDSIGNW-Z
(SEQ ID NO:42)


X-IDISIELNKAKSDLEESKEWIRRSNQKLDSIGNWH-Z
(SEQ ID NO:43)


X-DISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQ-Z
(SEQ ID NO:44)


X-ISIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQS-Z
(SEQ ID NO:45)


X-SIELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSS-Z
(SEQ ID NO:46)


X-IELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSST-Z
(SEQ ID NO:47)


X-ELNKAKSDLEESKEWIRRSNQKLDSIGNWHQSSTT-Z
(SEQ ID NO:48)


X-TAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQS-Z
(SEQ ID NO:49)


X-AVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSI-Z
(SEQ ID NO:50)


X-LVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNL-Z
(SEQ ID NO:51)


X-VEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLI-Z
(SEQ ID NO:52)


X-EAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIV-Z
(SEQ ID NO:53)


X-AKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVA-Z
(SEQ ID NO:54)


X-KQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAI-Z
(SEQ ID NO:55)


X-QARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-Z
(SEQ ID NO:56)


X-ARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKS-Z
(SEQ ID NO:57)


X-RSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSV-Z
(SEQ ID NO:58)


X-SDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQ-Z
(SEQ ID NO:59)


X-KLKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVN-Z
(SEQ ID NO:60)


X-LKEAIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNK-Z
(SEQ ID NO:61)


X-AIRDTNKAVQSVQSSIGNLIVAIKSVQDYVNKEIV-Z
(SEQ ID NO:62)


Anti-simian immunodeficiency virus peptides


X-WQEWERKVDFLEENITALLEEAQIQQEKNMYELQK-Z
(SEQ ID NO:63)


X-QEWERKVDFLEENITALLEEAQIQQEKNMYELQKL-Z
(SEQ ID NO:64)


X-EWERKVDFLEENITALLEEAQIQQEKNMYELQKLN-Z
(SEQ ID NO:65)


X-WERKVDFLEENITALLEEAQIQQEKNMYELQKLNS-Z
(SEQ ID NO:66)


X-ERKVDFLEENITALLEEAQIQQEKNMYELQKLNSW-Z
(SEQ ID NO:67)


X-RKVDFLEENITALLEEAQIQQEKNMYELQKLNSWD-Z
(SEQ ID NO:68)


X-KVDFLEENITALLEEAQIQQEKNMYELQKLNSWDV-Z
(SEQ ID NO:69)


X-VDFLEENITALLEEAQIQQEKNMYELQKLNSWDVF-Z
(SEQ ID NO:70)


X-DFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG-Z
(SEQ ID NO:71)


X-FLEENITALLEEAQIQQEKNMYELQKLNSWDVFGN-Z
(SEQ ID NO:72)


Anti-measles virus peptides


X-LHRIDLGPPISLERLDVGTNLGNAIAKLEAKELL-Z
(SEQ ID NO:73)


X-HRIDLGPPISLERLDVGTNLGNAIAKLEAKELLE-Z
(SEQ ID NO:74)


X-RIDLGPPISLERLDVGTNLGNAIAKLEAKELLES-Z
(SEQ ID NO:75)


X-IDLGPPISLERLDVGTNLGNAIAKLEAKELLESS-Z
(SEQ ID NO:76)


X-DLGPPISLERLDVGTNLGNAIAKLEAKELLESSD-Z
(SEQ ID NO:77)


X-LGPPISLERLDVGTNLGNAIAKLEAKELLESSDQ-Z
(SEQ ID NO:78)


X-GPPISLERLDVGTNLGNAIAKLEAKELLESSDQI-Z
(SEQ ID NO:79)


X-PPISLERLDVGTNLGNAIAKLEAKELLESSDQIL-Z
(SEQ ID NO:80)


X-PISLERLDVGTNLGNAIAKLEAKELLESSDQILR-Z
(SEQ ID NO:81)


X-SLERLDVGTNLGNAIAKLEAKELLESSDQILRSM-Z
(SEQ ID NO:82)


X-LERLDVGTNLGNAIAKLEAKELLESSDQILRSMK-Z
(SEQ ID NO:83)


Anti-Hepatitis B Virus Peptides







X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGGTTVCLGQNSQSP-Z;


X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGT-Z;


X-LLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTT-Z;


X-LVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTV-Z;


X-LQAGFFLLTRILTIPQSLDSWWTSLNGLGGTTVCL-Z;


X-QAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLG-Z;


X-AGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQ-Z;


X-GFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQN-Z;


X-FFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNS-Z;


X-FLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQ-Z;


X-LLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS-Z;


X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCMTT-Z;


X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDTQGML-Z;


X-GYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLP-Z


X-YRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPV-Z;


X-RWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z;


X-WMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCP-Z;


X-MCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPI-Z;


X-CLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLI-Z;


X-LRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIP-Z;


X-RRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPG-Z;


X-RFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS-Z;


X-FIIFLFILLLCLIFLLVLLDYQGMLPVCPLIGGSS-Z;


X-IIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSST-Z;


X-IFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTS-Z;


X-FLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTST-Z;


X-LFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTG-Z;


X-FILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGP-Z;


X-ILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPC-Z;


X-LLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCR-Z;


X-LLCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRT-Z;


X-LCLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTC-Z;


X-CLIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCM-Z;


X-LIFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCMT-Z; or


X-IFLLVLLDYQGMLPVCPLIPGSSTSTGPCRTCMTT-Z;









The one letter amino acid code is used.

Additionally,

“X” may represent an amino group, a hydrophobic group, including but not limited to carbobenzoxyl, dansyl, or T-butyloxycarbonyl; an acetyl group; a 9-fluorenylmethoxy-carbonyl (FMOC) group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

“Z” may represent a carboxyl group; an amido group; a T-butyloxycarbonyl group; a macromolecular carrier group including but not limited to lipid-fatty acid conjugates, polyethylene glycol, or carbohydrates.

5.4. Synthesis of Peptides
The peptides of the invention may be synthesized or prepared by techniques well known in the art. See, for example, Creighton, 1983, Proteins: Structures and Molecular Principles, W.H. Freeman and Co., NY, which is incorporated herein by reference in its entirety. Short peptides, for example, can be synthesized on a solid support or in solution. Longer peptides may be made using recombinant DNA techniques. Here, the nucleotide sequences encoding the peptides of the invention may be synthesized, and/or cloned, and expressed according to techniques well known to those of ordinary skill in the art. See, for example, Sambrook, et al., 1989, Molecular Cloning, A Laboratory Manual, Vols. 1-3, Cold Spring Harbor Press, NY.
The peptides of the invention may alternatively be synthesized such that one or more of the bonds which link the amino acid residues of the peptides are non-peptide bonds. These alternative non-peptide bonds may be formed by utilizing reactions well known to those in the art, and may include, but are not limited to imino, ester, hydrazide, semicarbazide, and azo bonds, to name but a few. In yet another embodiment of the invention, peptides comprising the sequences described above may be synthesized with additional chemical groups present at their amino and/or carboxy termini, such that, for example, the stability, bioavailability, and/or inhibitory activity of the peptides is enhanced. For example, hydrophobic groups such as carbobenzoxyl, dansyl, or t-butyloxycarbonyl groups, may be added to the peptides' amino termini. Likewise, an acetyl group or a 9-fluorenylmethoxy-carbonyl group may be placed at the peptides' amino termini. (See “X” in Tables I to IV, above.) Additionally, the hydrophobic group, t-butyloxycarbonyl, or an amido group may be added to the peptides' carboxy termini. (See “Z” in Tables I to IV, above.)
Further, the peptides of the invention may be synthesized such that their steric configuration is altered. For example, the D-isomer of one or more of the amino acid residues of the peptide may be used, rather than the usual L-isomer.
Still further, at least one of the amino acid residues of the peptides of the invention may be substituted by one of the well known non-naturally occurring amino acid residues. Alterations such as these may serve to increase the stability, bioavailability and/or inhibitory action of the peptides of the invention.
Any of the peptides described above may, additionally, have a macromolecular carrier group covalently attached to their amino and/or carboxy termini. Such macromolecular carrier groups may include, for example, lipid-fatty acid conjugates, polyethylene glycol, carbohydrates or additional peptides. “X”, in Tables I to IV, above, may therefore additionally represent any of the above macromolecular carrier groups covalently attached to the amino terminus of a peptide, with an additional peptide group being preferred. Likewise, “Z”, in Tables I to IV, may additionally represent any of the macromolecular carrier groups described above.
5.5. Assays for Anti-Membrane Fusion Activity
Described herein, are methods for ability of a compound, such as the peptides of the invention, to inhibit membrane fusion events. Specifically, assays for cell fusion events are described in Section 5.5.1, below, and assays for antiviral activity are described in Section 5.5.2, below.
5.5.1 Assays for Cell Fusion Events
Assays for cell fusion events are well known to those of skill in the art, and may be used in conjunction, for example, with the peptides of the invention to test the peptides' antifusogenic capabilities.
Cell fusion assays are generally performed in vitro. Such an assay may comprise culturing cells which, in the absence of any treatment would undergo an observable level of syncytial formation. For example, uninfected cells may be incubated in the presence of cells chronically infected with a virus that induces cell fusion. Such viruses may include, but are not limited to, HIV, SIV, or respiratory syncytial virus.
For the assay, cells are incubated in the presence of a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added.
Standard conditions for culturing cells, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and syncytial formation. Well known stains, such as crystal violet stain, may be used to facilitate the visualization of syncytial formation.
5.5.2 Assays for Antiviral Activity
The antiviral activity exhibited by the peptides of the invention may be measured, for example, by easily performed in vitro assays, such as those described below, which can test the peptides' ability to inhibit syncytia formation, or their ability to inhibit infection by cell-free virus. Using these assays, such parameters as the relative antiviral activity of the peptides, exhibit against a given strain of virus and/or the strain specific inhibitory activity of the peptide can be determined.
A cell fusion assay may be utilized to test the peptides' ability to inhibit viral-induced, such as HIV-induced, syncytia formation in vitro. Such an assay may comprise culturing uninfected cells in the presence of cells chronically infected with a syncytial-inducing virus and a peptide to be assayed. For each peptide, a range of peptide concentrations may be tested. This range should include a control culture wherein no peptide has been added. Standard conditions for culturing, well known to those of ordinary skill in the art, are used. After incubation for an appropriate period (24 hours at 37° C., for example) the culture is examined microscopically for the presence of multinucleated giant cells, which are indicative of cell fusion and syncytia formation. Well known stains, such as crystal violet stain, may be used to facilitate syncytial visualization. Taking HIV as an example, such an assay would comprise CD-4+ cells (such as Molt or CEM cells, for example) cultured in the presence of chronically HIV-infected cells and a peptide to be assayed.
Other well known characteristics of viral infection may also be assayed to test a peptide's antiviral capabilities. Once again taking HIV as an example, a reverse transcriptase (RT) assay may be utilized to test the peptides' ability to inhibit infection of CD-4+ cells by cell-free HIV. Such an assay may comprise culturing an appropriate concentration (i.e., TCID50) of virus and CD-4+ cells in the presence of the peptide to be tested. Culture conditions well known to those in the art are used. As above, a range of peptide concentrations may be used, in addition to a control culture wherein no peptide has been added. After incubation for an appropriate period (e.g., 7 days) of culturing, a cell-free supernatant is prepared, using standard procedures, and tested for the present of RT activity as a measure of successful infection. The RT activity may be tested using standard techniques such as those described by, for example, Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and/or Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). These references are incorporated herein by reference in their entirety.
Standard methods which are well-known to those of skill in the art may be utilized for assaying non-retroviral activity. See, for example, Pringle et al. (Pringle, C. R. et al., 1985, J. Medical Virology 17:377-386) for a discussion of respiratory syncytial virus and parainfluenza virus activity assay techniques. Further, see, for example, “Zinsser Microbiology”, 1988, Joklik, W. K. et al., eds., Appleton & Lange, Norwalk, Conn., 19th ed., for a general review of such techniques. These references are incorporated by reference herein in their entirety. In addition, the Examples presented below, in Sections 17, 18, 26 and 27 each provide additional assays for the testing of a compound's antiviral capability.
In vivo assays may also be utilized to test, for example, the antiviral activity of the peptides of the invention. To test for anti-HIV activity, for example, the in vivo model described in Barnett et al. (Barnett, S. W. et al., 1994, Science 266:642-646) may be used.
Additionally, anti-RSV activity can be assayed in vivo via well known mouse models. For example, RSV can be administered intranasally to mice of various inbred strains. Virus replicates in lungs of all strains, but the highest titers are obtained in P/N, C57L/N and DBA/2N mice. Infection of BALB/c mice produces an asymptomatic bronchiolitis characterized by lymphocytic infiltrates and pulmonary virus titers of 104 to 105 pfu/g of lung tissue (Taylor, G. et al., 1984, Infect. Immun. 43:649-655).
Cotton rat models of RSV are also well known. Virus replicates to high titer in the nose and lungs of the cotton rat but produces few if any signs of inflammation.
5.6. Uses of the Peptides of the Invention
The peptides of the invention may be utilized as antifusogenic or antiviral compounds, or as compounds which modulate intracellular processes involving coiled coil peptide structures. Further, such peptides may be used to identify agents which exhibit antifusogenic, antiviral or intracellular modulatory activity. Still further, the peptides of the invention may be utilized as organism or viral type/subtype-specific diagnostic tools.
The antifusogenic capability of the peptides of the invention may additionally be utilized to inhibit or treat/ameliorate symptoms caused by processes involving membrane fusion events. Such events may include, for example, virus transmission via cell-cell fusion, abnormal neurotransmitter exchange via cell-fusion, and sperm-egg fusion. Further, the peptides of the invention may be used to inhibit free viral, such as retroviral, particularly HIV, transmission to uninfected cells wherein such viral infection involves membrane fusion events or involves fusion of a viral structure with a cell membrane. Among the intracellular disorders involving coiled coil peptides structures which may be ameliorated by the peptides of the invention are disorders involving, for example, bacterial toxins.
With respect to antiviral activity, the viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to all strains of the viruses listed above, in Tables V through VII, and IX through XIV.
These viruses include, for example, human retroviruses, particularly HIV-1 and HIV-2 and the human T-lymphocyte viruses (HTLV-I and II). The non-human retroviruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to bovine leukosis virus, feline sarcoma and leukemia viruses, simian immunodeficiency, sarcoma and leukemia viruses, and sheep progress pneumonia viruses.
Non retroviral viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to human respiratory syncytial virus, canine distemper virus, newcastle disease virus, human parainfluenza virus, influenza viruses, measles viruses, Epstein-Barr viruses, hepatitis B viruses, and simian Mason-Pfizer viruses.
Non enveloped viruses whose transmission may be inhibited by the peptides of the invention include, but are not limited to picornaviruses such as polio viruses, hepatitis A virus, enterovirus, echoviruses and coxsackie viruses, papovaviruses such as papilloma virus, parvoviruses, adenoviruses and reoviruses.
As discussed more fully, below, in Section 5.5.1 and in the Example presented, below, in Section 8, DP107, DP178, DP107 analog and DP178 analog peptides form non-covalent protein-protein interactions which are required for normal activity of the virus. Thus, the peptides of the invention may also be utilized as components in assays for the identification of compounds that interfere with such protein-protein interactions and may, therefore, act as antiviral agents. These assays are discussed, below, in Section 5.5.1.
As demonstrated in the Example presented below in Section 6, the antiviral activity of the peptides of the invention may show a pronounced type and subtype specificity, i.e., specific peptides may be effective in inhibiting the activity of only specific viruses. This feature of the invention presents many advantages. One such advantage, for example, lies in the field of diagnostics, wherein one can use the antiviral specificity of the peptide of the invention to ascertain the identity of a viral isolate. With respect to HIV, one may easily determine whether a viral isolate consists of an HIV-1 or HIV-2 strain. For example, uninfected CD-4+ cells may be co-infected with an isolate which has been identified as containing HIV the DP178 (SEQ ID:1) peptide, after which the retroviral activity of cell supernatants may be assayed, using, for example, the techniques described above in Section 5.2. Those isolates whose retroviral activity is completely or nearly completely inhibited contain HIV-1. Those isolates whose viral activity is unchanged or only reduced by a small amount, may be considered to not contain HIV-1. Such an isolate may then be treated with one or more of the other DP178 peptides of the invention, and subsequently be tested for its viral activity in order to determine the identify of the viral isolate. The DP107 and DP178 analogs of the invention may also be utilized in a diagnostic capacity specific to the type and subtype of virus or organism in which the specific peptide sequence is found. A diagnostic procedure as described, above, for DP178, may be used in conjunction with the DP107/DP178 analog of interest.
5.5.1. Screening Assays
As demonstrated in the Example presented in Section 8, below, DP107 and DP178 portions of the TM protein gp41 form non-covalent protein-protein interactions. As is also demonstrated, the maintenance of such interactions is necessary for normal viral infectivity. Thus, compounds which bind DP107, bind DP178, and/or act to disrupt normal DP107/DP178 protein-protein interactions may act as antifusogenic, antiviral or cellular modulatory agents. Described below are assays for the identification of such compounds. Note that, while, for ease and clarity of discussion, DP107 and DP178 peptides will be used as components of the assays described, but it is to be understood that any of the DP107 analog or DP178 analog peptides described, above, in Sections 5.1 through 5.3 may also be utilized as part of these screens for compounds.
Compounds which may be tested for an ability to bind DP107, DP178, and/or disrupt DP107/DP178 interactions, and which therefore, potentially represent antifusogenic, antiviral or intracellular modulatory compounds, include, but are not limited to, peptides made of D- and/or L-configuration amino acids (m, for example, the form of random peptide libraries; see Lam, K. S. et al., 1991, Nature 354:82-84), phosphopeptides (m, for example, the form of random or partially degenerate, directed phosphopeptide libraries; see, for example, Songyang, Z. et al., 1993, Cell 72:767-778), antibodies, and small organic or inorganic molecules. Synthetic compounds, natural products, and other sources of potentially effective materials may be screened in a variety of ways, as described in this Section.
The compounds, antibodies, or other molecules identified may be tested, for example, for an ability to inhibit cell fusion or viral activity, utilizing, for example, assays such as those described, above, in Section 5.5.
Among the peptides which may be tested are soluble peptides comprising DP107 and/or DP178 domains, and peptides comprising DP107 and/or DP178 domains having one or more mutations within one or both of the domains, such as the M41-P peptide described, below, in the Example presented in Section 8, which contains a isoleucine to proline mutation within the DP178 sequence.
In one embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

    
    
        (a) exposing at least one compound to a peptide comprising a DP107 peptide for a time sufficient to allow binding of the compound to the DP107 peptide;
        (b) removing non-bound compounds; and
        (c) determining the presence of the compound bound to the DP107 peptide, thereby identifying an agent to be tested for antiviral ability.
    
    


In a second embodiment of such screening methods is a method for identifying a compound to be tested for antiviral ability comprising:

    
    
        (a) exposing at least one compound to a peptide comprising a DP178 peptide for a time sufficient to allow binding of the compound to the DP178 peptide;
        (b) removing non-bound compounds; and
        (c) determining the presence of the compound bound to the DP178 peptide, thereby identifying an agent to be tested for antiviral ability.
    
    


One method utilizing these types of approaches that may be pursued in the isolation of such DP107-binding or DP178-binding compounds is an assay which would include the attachment of either the DP107 or the DP178 peptide to a solid matrix, such as, for example, agarose or plastic beads, microtiter plate wells, petri dishes, or membranes composed of, for example, nylon or nitrocellulose. In such an assay system, either the DP107 or DP178 protein may be anchored onto a solid surface, and the compound, or test substance, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored component may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying.
Alternatively, an immobilized antibody, preferably a monoclonal antibody, specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.
In order to conduct the assay, the labeled compound is added to the coated surface containing the anchored DP107 or DP178 peptide. After the reaction is complete, unreacted components are removed (e.g., by washing) under conditions such that any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the compound is pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the labeled component is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the compound (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody).
Alternatively, such an assay can be conducted in a liquid phase, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for DP107 or DP178, whichever is appropriate for the given assay, or an antibody specific for the compound, i.e., the test substance, in order to anchor any complexes formed in solution, and a labeled antibody specific for the other member of the complex to detect anchored complexes.
By utilizing procedures such as this, large numbers of types of molecules may be simultaneously screened for DP107 or DP178-binding capability, and thus potential antiviral activity.
Further, compounds may be screened for an ability to inhibit the formation of or, alternatively, disrupt DP107/DP178 complexes. Such compounds may then be tested for antifusogenic, antiviral or intercellular modulatory capability. For ease of description, DP107 and DP178 will be referred to as “binding partners.” Compounds that disrupt such interactions may exhibit antiviral activity. Such compounds may include, but are not limited to molecules such as antibodies, peptides, and the like described above.
The basic principle of the assay systems used to identify compounds that interfere with the interaction between the DP107 and DP178 peptides involves preparing a reaction mixture containing peptides under conditions and for a time sufficient to allow the two peptides to interact and bind, thus forming a complex. In order to test a compound for disruptive activity, the reaction is conducted in the presence and absence of the test compound, i.e., the test compound may be initially included in the reaction mixture, or added at a time subsequent to the addition of one of the binding partners; controls are incubated without the test compound or with a placebo. The formation of any complexes between the binding partners is then detected. The formation of a complex in the control reaction, but not in the reaction mixture containing the test compound indicates that the compound interferes with the interaction of the DP107 and DP178 peptides.
The assay for compounds that interfere with the interaction of the binding partners can be conducted in a heterogeneous or homogeneous format. Heterogeneous assays involve anchoring one of the binding partners onto a solid phase and detecting complexes anchored on the solid phase at the end of the reaction. In homogeneous assays, the entire reaction is carried out in a liquid phase. In either approach, the order of addition of reactants can be varied to obtain different information about the compounds being tested. For example, test compounds that interfere with the interaction between the binding partners, e.g., by competition, can be identified by conducting the reaction in the presence of the test substance; i.e., by adding the test substance to the reaction mixture prior to or simultaneously with the binding partners. On the other hand, test compounds that disrupt preformed complexes, e.g. compounds with higher binding constants that displace one of the binding partners from the complex, can be tested by adding the test compound to the reaction mixture after complexes have been formed. The various formats are described briefly below.
In a heterogeneous assay system, one binding partner, e.g., either the DP107 or DP178 peptide, is anchored onto a solid surface, and its binding partner, which is not anchored, is labeled, either directly or indirectly. In practice, microtiter plates are conveniently utilized. The anchored species may be immobilized by non-covalent or covalent attachments. Non-covalent attachment may be accomplished simply by coating the solid surface with a solution of the protein and drying. Alternatively, an immobilized antibody specific for the protein may be used to anchor the protein to the solid surface. The surfaces may be prepared in advance and stored.
In order to conduct the assay, the binding partner of the immobilized species is added to the coated surface with or without the test compound. After the reaction is complete, unreacted components are removed (e.g., by washing) and any complexes formed will remain immobilized on the solid surface. The detection of complexes anchored on the solid surface can be accomplished in a number of ways. Where the binding partner was pre-labeled, the detection of label immobilized on the surface indicates that complexes were formed. Where the binding partner is not pre-labeled, an indirect label can be used to detect complexes anchored on the surface; e.g., using a labeled antibody specific for the binding partner (the antibody, in turn, may be directly labeled or indirectly labeled with a labeled anti-Ig antibody). Depending upon the order of addition of reaction components, test compounds which inhibit complex formation or which disrupt preformed complexes can be detected.
Alternatively, the reaction can be conducted in a liquid phase in the presence or absence of the test compound, the reaction products separated from unreacted components, and complexes detected; e.g., using an immobilized antibody specific for one binding partner to anchor any complexes formed in solution, and a labeled antibody specific for the other binding partner to detect anchored complexes. Again, depending upon the order of addition of reactants to the liquid phase, test compounds which inhibit complex or which disrupt preformed complexes can be identified.
In an alternate embodiment of the invention, a homogeneous assay can be used. In this approach, a preformed complex of the DP107 and DP178 peptides is prepared in which one of the binding partners is labeled, but the signal generated by the label is quenched due to complex formation (see, e.g., U.S. Pat. No. 4,109,496 by Rubenstein which utilizes this approach for immunoassays). The addition of a test substance that competes with and displaces one of the binding partners from the preformed complex will result in the generation of a signal above background. In this way, test substances which disrupt DP-107/DP-178 protein-protein interaction can be identified.
In an alternative screening assay, test compounds may be assayed for the their ability to disrupt a DP178/DP107 interaction, as measured immunometrically using an antibody specifically reactive to a DP107/DP178 complex (i.e., an antibody that recognizes neither DP107 nor DP178 individually). Such an assay acts as a competition assay, and is based on techniques well known to those of skill in the art.
The above competition assay may be described, by way of example, and not by way of limitation, by using the DP178 and M41Δ178 peptides and by assaying test compounds for the disruption of the complexes formed by these two peptides by immunometrically visualizing DP178/M41Δ178 complexes via the human recombinant Fab, Fab-d, as described, below, in the Example presented in Section 8. M41Δ178 is a maltose binding fusion protein containing a gp41 region having its DP178 domain deleted, and is described, below, in the Example presented in Section 8.
Utilizing such an assay, M411178 may be immobilized onto solid supports such as microtiter wells. A series of dilutions of a test compound may then be added to each M41Δ178-containing well in the presence of a constant concentration of DP-178 peptide. After incubation, at, for example, room temperature for one hour, unbound DP-178 and test compound are removed from the wells and wells are then incubated with the DP178/M41Δ178-specific Fab-d antibody. After incubation and washing, unbound Fab-d is removed from the plates and bound Fab-d is quantitated. A no-inhibitor control should also be conducted. Test compounds showing an ability to disrupt DP178/M41Δ178 complex formation are identified by their concentration-dependent decrease in the level of Fab-d binding.
A variation of such an assay may be utilized to perform a rapid, high-throughput binding assay which is capable of directly measuring DP178 binding to M41Δ178 for the determination of binding constants of the ligand of inhibitory constants for competitors of DP178 binding.
Such an assay takes advantage of accepted radioligand and receptor binding principles. (See, for example, Yamamura, H. I. et al., 1985, “Neurotransmitter Receptor Binding”, 2nd ed., Raven Press, NY.) As above, M41Δ178 is immobilized onto a solid support such as a microtiter well. DP178 binding to M41Δ178 is then quantitated by measuring the fraction of DP178 that is bound as 125I-DP178 and calculating the total amount bound using a value for specific activity (dpm/μg peptide) determined for each labeled DP178 preparation. Specific binding to M41Δ178 is defined as the difference of the binding of the labeled DP178 preparation in the microtiter wells (totals) and the binding in identical wells containing, in addition, excess unlabeled DP178 (nonspecifics).
5.5 Pharmaceutical Formulations, Dosages and Modes of Administration
The peptides of the invention may be administered using techniques well known to those in the art. Preferably, agents are formulated and administered systemically. Techniques for formulation and administration may be found in “Remington's Pharmaceutical Sciences”, 18th ed., 1990, Mack Publishing Co., Easton, Pa. Suitable routes may include oral, rectal, transmucosal, or intestinal administration; parenteral delivery, including intramuscular, subcutaneous, intramedullary injections, as well as, intrathecal, direct intraventricular, intravenous, intraperitoneal, intranasal, or intraocular injections, just to name a few. For injection, the agents of the invention may be formulated in aqueous solutions, preferably in physiologically compatible buffers such as Hanks' solution, Ringer's solution, or physiological saline buffer. For such transmucosal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.
In instances wherein intracellular administration of the peptides of the invention or other inhibitory agents is preferred, techniques well known to those of ordinary skill in the art may be utilized. For example, such agents may be encapsulated into liposomes, then administered as described above. Liposomes are spherical lipid bilayers with aqueous interiors. All molecules present in an aqueous solution at the time of liposome formation are incorporated into the aqueous interior. The liposomal contents are both protected from the external microenvironment and, because liposomes fuse with cell membranes, are effectively delivered into the cell cytoplasm. Additionally, due to their hydrophobicity, when small molecules are to be administered, direct intracellular administration may be achieved.
Nucleotide sequences encoding the peptides of the invention which are to be intracellularly administered may be expressed in cells of interest, using techniques well known to those of skill in the art. For example, expression vectors derived from viruses such as retroviruses, vaccinia viruses, adeno-associated viruses, herpes viruses, or bovine papilloma viruses, may be used for delivery and expression of such nucleotide sequences into the targeted cell population. Methods for the construction of such vectors and expression constructs are well known. See, for example, Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Press, Cold Spring Harbor N.Y., and Ausubel et al., 1989, Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, NY.
With respect to HIV, peptides of the invention, particularly DP107 and DP178, may be used as therapeutics in the treatment of AIDS. In addition, the peptides may be used as prophylactic measures in previously uninfected individuals after acute exposure to an HIV virus. Examples of such prophylactic use of the peptides may include, but are not limited to, prevention of virus transmission from mother to infant and other settings where the likelihood of HIV transmission exists, such as, for example, accidents in health care settings wherein workers are exposed to HIV-containing blood products. The successful use of such treatments do not rely upon the generation of a host immune response directed against such peptides.
Effective dosages of the peptides of the invention to be administered may be determined through procedures well known to those in the art which address such parameters as biological half-life, bioavailability, and toxicity. Given the data presented below in Section 6, DP178, for example, may prove efficacious in vivo at doses required to achieve circulating levels of about 1 to about 10 ng per ml of peptide.
A therapeutically effective dose refers to that amount of the compound sufficient to result in amelioration of symptoms or a prolongation of survival in a patient. Toxicity and therapeutic efficacy of such compounds can be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., for determining the LD50 (the dose lethal to 50% of the population) and the ED50 (the dose therapeutically effective in 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index and it can be expressed as the ratio LD50/ED50. Compounds which exhibit large therapeutic indices are preferred. The data obtained from these cell culture assays and animal studies can be used in formulating a range of dosage for use in humans. The dosage of such compounds lies preferably within a range of circulating concentrations that include the ED50 with little or no toxicity. The dosage may vary within this range depending upon the dosage form employed and the route of administration utilized. For any compound used in the method of the invention, the therapeutically effective dose can be estimated initially from cell culture assays. A dose may be formulated in animal models to achieve a circulating plasma concentration range that includes the IC50 (e.g., the concentration of the test compound which achieves a half-maximal inhibition of the fusogenic event, such as a half-maximal inhibition of viral infection relative to the amount of the event in the absence of the test compound) as determined in cell culture. Such information can be used to more accurately determine useful doses in humans. Levels in plasma may be measured, for example, by high performance liquid chromatography (HPLC).
The peptides of the invention may, further, serve the role of a prophylactic vaccine, wherein the host raises antibodies against the peptides of the invention, which then serve to neutralize HIV viruses by, for example, inhibiting further HIV infection.
Administration of the peptides of the invention as a prophylactic vaccine, therefore, would comprise administering to a host a concentration of peptides effective in raising an immune response which is sufficient to neutralize HIV, by, for example, inhibiting HIV ability to infect cells. The exact concentration will depend upon the specific peptide to be administered, but may be determined by using standard techniques for assaying the development of an immune response which are well known to those of ordinary skill in the art. The peptides to be used as vaccines are usually administered intramuscularly.
The peptides may be formulated with a suitable adjuvant in order to enhance the immunological response. Such adjuvants may include, but are not limited to mineral gels such as aluminum hydroxide; surface active substances such as lysolecithin, pluronic polyols, polyanions; other peptides; oil emulsions; and potentially useful human adjuvants such as BCG and Corynebacterium parvum. Many methods may be used to introduce the vaccine formulations described here. These methods include but are not limited to oral, intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, and intranasal routes.
Alternatively, an effective concentration of polyclonal or monoclonal antibodies raised against the peptides of the invention may be administered to a host so that no uninfected cells become infected by HIV. The exact concentration of such antibodies will vary according to each specific antibody preparation, but may be determined using standard techniques well known to those of ordinary skill in the art. Administration of the antibodies may be accomplished using a variety of techniques, including, but not limited to those described in this section.
For all such treatments described above, the exact formulation, route of administration and dosage can be chosen by the individual physician in view of the patient's condition. (See e.g. Fingl et al., 1975, in “The Pharmacological Basis of Therapeutics”, Ch. 1 p1).
It should be noted that the attending physician would know how to and when to terminate, interrupt, or adjust administration due to toxicity, or to organ dysfunctions. Conversely, the attending physician would also know to adjust treatment to higher levels if the clinical response were not adequate (precluding toxicity). The magnitude of an administrated dose in the management of the oncogenic disorder of interest will vary with the severity of the condition to be treated and the route of administration. The dose and perhaps dose frequency, will also vary according to the age, body weight, and response of the individual patient. A program comparable to that discussed above may be used in veterinary medicine.
Use of pharmaceutically acceptable carriers to formulate the compounds herein disclosed for the practice of the invention into dosages suitable for systemic administration is within the scope of the invention. With proper choice of carrier and suitable manufacturing practice, the compositions of the present invention, in particular, those formulated as solutions, may be administered parenterally, such as by intravenous injection. The compounds can be formulated readily using pharmaceutically acceptable carriers well known in the art into dosages suitable for oral administration. Such carriers enable the compounds of the invention to be formulated as tablets, pills, capsules, liquids, gels, syrups, slurries, suspensions and the like, for oral ingestion by a patient to be treated.
Pharmaceutical compositions suitable for use in the present invention include compositions wherein the active ingredients are contained in an effective amount to achieve its intended purpose. Determination of the effective amounts is well within the capability of those skilled in the art, especially in light of the detailed disclosure provided herein.
In addition to the active ingredients, these pharmaceutical compositions may contain suitable pharmaceutically acceptable carriers comprising excipients and auxiliaries which facilitate processing of the active compounds into preparations which can be used pharmaceutically. The preparations formulated for oral administration may be in the form of tablets, dragees, capsules, or solutions.
The pharmaceutical compositions of the present invention may be manufactured in a manner that is itself known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping or lyophilizing processes.
Pharmaceutical formulations for parenteral administration include aqueous solutions of the active compounds in water-soluble form. Additionally, suspensions of the active compounds may be prepared as appropriate oily injection suspensions. Suitable lipophilic solvents or vehicles include fatty oils such as sesame oil, or synthetic fatty acid esters, such as ethyl oleate or triglycerides, or liposomes. Aqueous injection suspensions may contain substances which increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Optionally, the suspension may also contain suitable stabilizers or agents which increase the solubility of the compounds to allow for the preparation of highly concentrated solutions.
Pharmaceutical preparations for oral use can be obtained by combining the active compounds with solid excipient, optionally grinding a resulting mixture, and processing the mixture of granules, after adding suitable auxiliaries, if desired, to obtain tablets or dragee cores. Suitable excipients are, in particular, fillers such as sugars, including lactose, sucrose, mannitol, or sorbitol; cellulose preparations such as, for example, maize starch, wheat starch, rice starch, potato starch, gelatin, gum tragacanth, methyl cellulose, hydroxypropylmethyl-cellulose, sodium carboxymethylcellulose, and/or polyvinylpyrrolidone (PVP). If desired, disintegrating agents may be added, such as the cross-linked polyvinyl pyrrolidone, agar, or alginic acid or a salt thereof such as sodium alginate.
Dragee cores are provided with suitable coatings. For this purpose, concentrated sugar solutions may be used, which may optionally contain gum arabic, talc, polyvinyl pyrrolidone, carbopol gel, polyethylene glycol, and/or titanium dioxide, lacquer solutions, and suitable organic solvents or solvent mixtures. Dyestuffs or pigments may be added to the tablets or dragee coatings for identification or to characterize different combinations of active compound doses.
Pharmaceutical preparations which can be used orally include push-fit capsules made of gelatin, as well as soft, sealed capsules made of gelatin and a plasticizer, such as glycerol or sorbitol. The push-fit capsules can contain the active ingredients in admixture with filler such as lactose, binders such as starches, and/or lubricants such as talc or magnesium stearate and, optionally, stabilizers. In soft capsules, the active compounds may be dissolved or suspended in suitable liquids, such as fatty oils, liquid paraffin, or liquid polyethylene glycols. In addition, stabilizers may be added.
6. EXAMPLE
DP178 (SEQ ID:1) is a Potent Inhibitor of HIV-1 Infection
In this example, DP178 (SEQ ID:1) is shown to be a potent inhibitor of HIV-1 mediated CD-4+ cell-cell fusion and infection by cell free virus. In the fusion assay, this peptide completely blocks virus induced syncytia formation at concentrations of from 1-10 ng/ml. In the infectivity assay the inhibitory concentration is somewhat higher, blocking infection at 90 ng/ml. It is further shown that DP178 (SEQ ID:1) shows that the antiviral activity of DP178 (SEQ ID:1) is highly specific for HIV-1. Additionally, a synthetic peptide, DP-185 (SEQ ID:3), representing a HIV-1-derived DP178 homolog is also found to block HIV-1-mediated syncytia formation.
6.1. Materials and Methods
6.1.1. Peptide Synthesis
Peptides were synthesized using Fast Moc chemistry on an Applied Biosystems Model 431A peptide synthesizer. Generally, unless otherwise noted, the peptides contained amidated carboxy termini and acetylated amino termini. Amidated peptides were prepared using Rink resin (Advanced Chemtech) while peptides containing free carboxy termini were synthesized on Wang (p-alkoxy-benzyl-alcohol) resin (Bachem). First residues were double coupled to the appropriate resin and subsequent residues were single coupled. Each coupling step was followed by acetic anhydride capping. Peptides were cleaved from the resin by treatment with trifluoracetic acid. (TFA) (10 ml), H2O (0.5 ml), thioanisole (0.5 ml), ethanedithiol (0.25 ml), and crystalline phenol (0.75 g). Purification was carried out by reverse phase HPLC. Approximately 50 mg samples of crude peptide were chromatographed on a Waters Delta Pak C18 column (19 mm×30 cm, 15μ spherical) with a linear gradient; H2O/acetonitrile 0.1% TFA. Lyophilized peptides were stored desiccated and peptide solutions were made in water at about 1 mg/ml. Electrospray mass spectrometry yielded the following results: DP178 (SEQ ID:1):4491.87 (calculated 4491.94); DP-180 (SEQ ID:2):4491.45 (calculated 4491.94); DP-185 (SEQ ID:3):not done (calculated 4546.97).
6.1.2. Virus
The HIV-1LAI virus was obtained from R. Gallo (Popovic, M. et al., 1984, Science 224:497-508) and propagated in CEM cells cultured in RPMI 1640 containing 10% fetal calf serum. Supernatant from the infected CEM cells was passed through a 0.2 μm filter and the infectious titer estimated in a microinfectivity assay using the AA5 cell line to support virus replication. For this purpose, 25 μl of serial diluted virus was added to 75 μl AA5 cells at a concentration of 2×105/ml in a 96-well microtitre plate. Each virus dilution was tested in triplicate. Cells were cultured for eight days by addition of fresh medium every other day. On day 8 post infection, supernatant samples were tested for virus replication as evidenced by reverse transcriptase activity released to the supernatant. The TCID50 was calculated according to the Reed and Muench formula (Reed, L. J. et al., 1938, Am. J. Hyg. 27:493-497). The titer of the HIV-1LAI and HIV-1MN stocks used for these studies, as measured on the AA5 cell line, was approximately 1.4×106 and 3.8×104 TCID50/ml, respectively.
6.1.3. Cell Fusion Assay
Approximately 7×104 Molt cells were incubated with 1×104 CEM cells chronically infected with the HIV-1LAI virus in 96-well plates (one-half area cluster plates; Costar, Cambridge, Mass.) in a final volume of 100 μl culture medium as previously described (Matthews, T. J. et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5428). Peptide inhibitors were added in a volume of 10 μl and the cell mixtures were incubated for 24 hr. at 37° C. At that time, multinucleated giant cells were estimated by microscopic examination at a 40× magnification which allowed visualization of the entire well in a single field.
6.1.4. Cell Free Virus Infection Assay
Synthetic peptides were incubated at 37° C. with either 247 TCID50 (for experiment depicted in FIG. 2), or 62 TCID50 (for experiment depicted in FIG. 3) units of HIV-1LAI virus or 25 TCID50 units of HIV-2NHZ and CEM CD4+ cells at peptide concentrations of 0, 0.04, 0.4, 4.0, and 40 μg/ml for 7 days. The resulting reverse transcriptase (RT) activity in counts per minute was determined using the assay described, below, in Section 6.1.5. See, Reed, L. J. et al., 1938, Am. J. Hyg. 27: 493-497 for an explanation of TCID50 calculations.
6.1.5. Reverse Transcriptase Assay
The micro-reverse transcriptase (RT) assay was adapted from Goff et al. (Goff, S. et al., 1981, J. Virol. 38:239-248) and Willey et al. (Willey, R. et al., 1988, J. Virol. 62:139-147). Supernatants from virus/cell cultures are adjusted to 1% Triton-X100. A 10 μl sample of supernatant was added to 50 μl of RT cocktail in a 96-well U-bottom microtitre plate and the samples incubated at 37° C. for 90 min. The RT cocktail contained 75 mM KCl, 2 mM dithiothreitol, 5 mM MgCl2, 5 μg/ml poly A (Pharmacia, cat. No. 27-4110-01), 0.25 units/ml oligo dT (Pharmacia, cat. No. 27-7858-0.01), 0.05% NP40, 50 mM Tris-HCl, pH 7.8, 0.5 μM non-radioactive dTTP, and 10 μCi/ml 32P-dTTP (Amersham, cat. No. PB.10167).
After the incubation period, 401 of reaction mixture was applied to a Schleicher and Schuell (S+S) NA45 membrane (or DE81 paper) saturated in 2×SSC buffer (0.3M NaCl and 0.003M sodium citrate) held in a S+S Minifold over one sheet of GB003 (S+S) filter paper, with partial vacuum applied. Each well of the minifold was washed four times with 200 μl 2×SSC, under full vacuum. The membrane was removed from the minifold and washed 2 more times in a pyrex dish with an excess of 2×SSC. Finally, the membrane was drained on absorbent paper, placed on Whatman #3 paper, covered with Saran wrap, and exposed to film overnight at −70° C.
6.2. Results
6.2.1. Peptide of Infected Cell-Induced Syncytia Formation
The initial screen for antiviral activity assayed peptides' ability to block syncytium formation induced by overnight co-cultivation of uninfected Molt4 cells with chronically HIV-1 infected CEM cells. The results of several such experiments are presented herein. In the first of these experiments, serial DP178 (SEQ ID:1) peptide concentrations between 10 μg/ml and 12.5 ng/ml were tested for blockade of the cell fusion process. For these experiments, CEM cells chronically infected with either HIV-1>, HIV-1MN, HIV-1RF, or HIV-1SF2 virus were cocultivated overnight with uninfected Molt 4 cells. The results (FIG. 4) show that DP178 (SEQ ID:1) afforded complete protection against each of the HIV-1 isolates down to the lowest concentration of DP178 (SEQ ID:1) used. For HIV-inhibition, the lowest concentration tested was 12.5 ng/ml; for all other HIV-1 viruses, the lowest concentration of DP178 (SEQ ID:1) used in this study was 100 ng/ml. A second peptide, DP-180 (SEQ ID:2), containing the same amino acid residues as DP178 (SEQ ID:1) but arranged in a random order exhibited no evidence of anti-fusogenic activity even at the high concentration of 40 μg/ml (FIG. 4). These observations indicate that the inhibitory effect of DP178 (SEQ ID:1) is primary sequence-specific and not related to non-specific peptide/protein interactions. The actual endpoint (i.e., the lowest effective inhibitory concentration) of DP178 inhibitory action is within the range of 1-10 ng/ml.
The next series of experiments involved the preparation and testing of a DP178 (SEQ ID:1) homolog for its ability to inhibit HIV-1-induced syncytia formation. As shown in FIG. 1, the sequence of DP-185 (SEQ ID:3) is slightly different from DP178 (SEQ ID:1) in that its primary sequence is taken from the HIV-1SF2 isolate and contains several amino acid differences relative to DP178 (SEQ ID:1) near the N terminus. As shown in FIG. 4, DP-185 (SEQ ID:3), exhibits inhibitory activity even at 312.5 ng/ml, the lowest concentration tested.
The next series of experiments involved a comparison of DP178 (SEQ ID:1) HIV-1 and HIV-2 inhibitory activity. As shown in FIG. 5, DP178 (SEQ ID:1) blocked HIV-1-mediated syncytia formation at peptide concentrations below 1 ng/ml. DP178 (SEQ ID:1) failed, however, to block HIV-2 mediated syncytia formation at concentrations as high as 10 g/ml. This striking 4 log selectivity of DP178 (SEQ ID:1) as an inhibitor of HIV-1-mediated cell fusion demonstrates an unexpected HIV-1 specificity in the action of DP178 (SEQ ID:1). DP178 (SEQ ID:1) inhibition of HIV-1-mediated cell fusion, but the peptide's inability to inhibit HIV-2 medicated cell fusion in the same cell type at the concentrations tested provides further evidence for the high degree of selectivity associated with the antiviral action of DP178 (SEQ ID:1).
6.2.2. Peptide Inhibition of Infection by Cell-Free Virus
DP178 (SEQ ID:1) was next tested for its ability to block CD-4+ CEM cell infection by cell free HIV-1 virus. The results, shown in FIG. 2, are from an experiment in which DP178 (SEQ ID:1) was assayed for its ability to block infection of CEM cells by an HIV-1LAI isolate. Included in the experiment were three control peptides, DP-116 (SEQ ID:9), DP-125 (SEQ ID:8), and DP-118 (SEQ ID:10). DP-116 (SEQ ID:9) represents a peptide previously shown to be inactive using this assay, and DP-125 (SEQ ID:8; Wild, C. et al., 1992, Proc. Natl. Acad, Sci. USA 89:10,537) and DP-118 (SEQ ID:10) are peptides which have previously been shown to be active in this assay. Each concentration (0, 0.04, 0.4, 4, and 40 μg/ml) of peptide was incubated with 247 TCID50 units of HIV-1LAI virus and CEM cells. After 7 days of culture, cell-free supernatant was tested for the presence of RT activity as a measure of successful infection. The results, shown in FIG. 2, demonstrate that DP178 (SEQ ID:1) inhibited the de novo infection process mediated by the HIV-1 viral isolate at concentrations as low as 90 ng/ml (IC50=90 ng/ml). In contrast, the two positive control peptides, DP-125 (SEQ: ID:8) and DP-118 (SEQ ID:10), had over 60-fold higher IC50 concentrations of approximately 5 μg/ml.
In a separate experiment, the HIV-1 and HIV-2 inhibitory action of DP178 (SEQ ID:1) was tested with CEM cells and either HIV-1LAI or HIV-2NHZ. 62 TCID50 HIV-1LAI or 25 GCID50 HIV-2NHZ were used in these experiments, and were incubated for 7 days. As may be seen in FIG. 3, DP178 (SEQ ID:1) inhibited HIV-1 infection with an IC50 of about 31 ng/ml. In contrast, DP178 (SEQ ID:1) exhibited a much higher IC50 for HIV-2NHZ, thus making DP178 (SEQ ID:1) two logs more potent as a HIV-1 inhibitor than a HIV-2 inhibitor. This finding is consistent with the results of the fusion inhibition assays described, above, in Section 6.2.1, and further supports a significant level of selectivity (i.e., for HIV-1 over HIV-2).
7. EXAMPLE
The HIV-1 Inhibitor, DP178 (SEQ ID:1) is Non-Cytotoxic
In this Example, the 36 amino acid synthetic peptide inhibitor DP178 (SEQ ID:1) is shown to be non-cytotoxic to cells in culture, even at the highest peptide concentrations (40 μg/ml) tested.
7.1. Materials and Methods
Cell proliferation and toxicity assay: Approximately 3.8×105 CEM cells for each peptide concentration were incubated for 3 days at 37° C. in T25 flasks. Peptides tested were DP178 (SEQ ID:1) and DP-116 (SEQ ID:9), as described in FIG. 1. Peptides were synthesized as described, above, in Section 6.1. The concentrations of each peptide used were 0, 2.5, 10, and 40 μg/ml. Cell counts were taken at incubation times of 0, 24, 48, and 72 hours.
7.2. Results
Whether the potent HIV-1 inhibitor DP178 (SEQ ID:1) exhibited any cytotoxic effects was assessed by assaying the peptide's effects on the proliferation and viability of cells in culture. CEM cells were incubated in the presence of varying concentrations of DP178 (SEQ ID:1), and DP-116 (SEQ ID:9), a peptide previously shown to be ineffective as a HIV inhibitor (Wild, C. et al., 1992, Proc. Natl. Acad. Sci. USA 89:10,537-10,541). Additionally, cells were incubated in the absence of either peptide.
The results of the cytotoxicity study demonstrate that DP178 (SEQ ID:1) exhibits no cytotoxic effects on cells in culture. As can be seen, below, in Table XXIV, even the proliferation and viability characteristics of cells cultured for 3 days in the presence of the highest concentration of DP178 (SEQ ID:1) tested (40 μg/ml) do not significantly differ from the DP-116 (SEQ ID:9) or the no-peptide controls. The cell proliferation data is also represented in graphic form in FIG. 6. As was demonstrated in the Working Example presented above in Section 6, DP178 (SEQ ID:1) completely inhibits HIV-1 mediated syncytia formation at peptide concentrations between 1 and 10 ng/ml, and completely inhibits cell-free viral infection at concentrations of at least 90 ng/ml. Thus, this study demonstrates that even at peptide concentrations greater than 3 log higher than the HIV inhibitory dose, DP178 (SEQ ID:1) exhibits no cytotoxic effects.









TABLE XXIV









% Viability










Peptide
at time (hours)














Peptide
Concentration μg/ml
0
24
48
72


















DP178
40
98
97
95
97



(SEQ
10
98
97
98
98



ID:1)
2.5
98
93
96
96



DP116
40
98
95
98
97



(SEQ
10
98
95
93
98



ID:9)
2.5
98
96
98
99



No
0
98
97
99
98



Peptide










8. EXAMPLE
The Interaction of DP178 and DP107
Soluble recombinant forms of gp41 used in the example described below provide evidence that the DP178 peptide associates with a distal site on gp41 whose interactive structure is influenced by the DP107 leucine zipper motif. A single mutation disrupting the coiled-coil structure of the leucine zipper domain transformed the soluble recombinant gp41 protein from an inactive to an active inhibitor of HIV-1 fusion. This transformation may result from liberation of the potent DP178 domain from a molecular clasp with the leucine zipper, DP107, determinant. The results also indicate that the anti-HIV activity of various gp41 derivatives (peptides and recombinant proteins) may be due to their ability to form complexes with viral gp41 and interfere with its fusogenic process.
8.1. Materials and Methods
8.1.1. Construction of Fusion proteins and GP41 Mutants
Construction of fusion proteins and mutants shown in FIG. 7 was accomplished as follows: the DNA sequence corresponding to the extracellular domain of gp41 (540-686) was cloned into the Xmn I site of the expression vector pMal-p2 (New England Biolab) to give M41. The gp41 sequence was amplified from pgtat (Malim et al., 1988, Nature 355: 181-183) by using polymerase chain reaction (PCR) with upstream primer 5′-ATGACGCTGACGGTACAGGCC-3′ (SEQ ID NO:11) (primer A) and downstream primer 5′-TGACTAAGCTTAATACCACAGCCAATTTGTTAT-3′ (SEQ ID NO:12)(primer B). M41-P was constructed by using the T7-Gen in vitro mutagenesis kit from United States Biochemicals (USB) following the supplier's instructions. The mutagenic primer (5′-GGAGCTGCTTGGGGCCCCAGAC-3′ (SEQ ID NO:13) introduces an Ile to Pro mutation in M41 at position 578. M41Δ107, from which the DP-107 region has been deleted, was made using a deletion mutagenic primer 5′-CCAAATCCCCAGGAGCTGCTCGAGCTGCACTATACCAGAC-3′ (SEQ ID NO:14) (primer C) following the USB T7-Gen mutagenesis protocol. M41Δ178, from which the DP-178 region has been deleted, was made by cloning the DNA fragment corresponding to gp41 amino acids 540-642 into the Xmn I site of pMal-p2. Primer A and 5′-ATAGCTTCTAGATTAATTGTTAATTTCTCTGTCCC-3′ (SEQ ID NO:15) (primer D) were used in the PCR with the template pgtat to generate the inserted DNA fragments. M41-P was used as the template with primer A and D in PCR to generate M41-PΔ178. All inserted sequences and mutated residues were checked by restriction enzyme analysis and confirmed by DNA sequencing.
8.1.2. Purification and Characterization of Fusion Proteins
The fusion proteins were purified according to the protocol described in the manufacturer's brochure of protein fusion and purification systems from New England Biolabs (NEB). Fusion proteins (10 ng) were analyzed by electrophoresis on 8% SDS polyacrylamide gels. Western blotting analysis was performed as described by Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, 2d Ed, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., Ch. 18, pp. 64-75. An HIV-1 positive serum diluted 1000-fold, or a human Fab derived from repertoire cloning was used to react with the fusion proteins. The second antibody was HRP-conjugated goat antihuman Fab. An ECL Western blotting detection system (Amersham) was used to detect the bound antibody. A detailed protocol for this detection system was provided by the manufacturer. Rainbow molecular weight markers (Amersham) were used to estimate the size of fusion proteins.
8.1.3. Cell Fusion Assays for Anti-HIV Activity
Cell fusion assays were performed as previously described (Matthews et al., 1987, Proc. Natl. Acad. Sci. USA 84: 5424-5481). CEM cells (7×104) were incubated with HIV-1IIIB chronically infected CEM cells (104) in 96-well flat-bottomed half-area plates (Costar) in 100 μl culture medium. Peptide and fusion proteins at various concentrations in 10 μl culture medium were incubated with the cell mixtures at 37° C. for 24 hours. Multinucleated syncytia were estimated with microscopic examination. Both M41 and M41-P did not show cytotoxicity at the concentrations tested and shown in FIG. 8.
Inhibition of HIV-1 induced cell-cell fusion activity was carried out in the presence of 10 nM DP178 and various concentrations of M41Δ178 or M41-PΔ178 as indicated in FIG. 9. There was no observable syncytia in the presence of 10 nM DP178. No peptide or fusion protein was added in the control samples.
8.1.4. Elisa Analysis of DP178 Binding to the Leucine Zipper Motif of GP41
The amino acid sequence of DP178 used is: YTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWF. For enzyme linked immunoassay (ELISA), M41Δ178 or M41-PΔ178 (5 μg/ml) in 0.1M NaHCO3, pH 8.6, were coated on 96 wells Linbro ELISA plates (Flow Lab, Inc.) overnight. Each well was washed three times with distilled water then blocked with 3% bovine serum albumin (BSA) for 2 hours. After blocking, peptides with 0.5% BSA in TBST (40 mM Tris-HCl pH7.5, 150 mM NaCl, 0.05% Tween 20) were added to the ELISA plates and incubated at room temperature for 1 hour. After washing three times with TBST, Fab-d was added at a concentration of 10 ng/ml with 0.5% BSA in TBST. The plates were washed three times with TBST after incubation at room temperature for 1 hour. Horse radish peroxidase (HRP) conjugated goat antihuman Fab antiserum at a 2000 fold dilution in TBST with 0.5% BSA was added to each well and incubated at room temperature for 45 minutes. The plates were then washed four times with TBST. The peroxidase substrate o-phenylene diamine (2.5 mg/ml) and 0.15% H2O2 were added to develop the color. The reaction was stopped with an equal volume of 4.5 N H2SO4 after incubation at room temperature for 10 minutes. The optical density of the stopped reaction mixture was measured with a micro plate reader (Molecular Design) at 490 nm. Results are shown in FIG. 10.
8.2. Results
8.2.1. The Expression and Characterization of the Ectodomain of gp41
As a step toward understanding the roles of the two helical regions in gp41 structure and function, the ectodomain of gp41 was expressed as a maltose binding fusion protein (M41) (FIG. 7). The fusogenic peptide sequence at the N-terminal of gp41 was omitted from this recombinant protein and its derivatives to improve solubility. The maltose binding protein facilitated purification of the fusion proteins under relatively mild, non-denaturing conditions. Because the M41 soluble recombinant gp41 was not glycosylated, lacked several regions of the transmembrane protein (i.e., the fusion peptide, the membrane spanning, and the cytoplasmic domains), and was expressed in the absence of gp120, it was not expected to precisely reflect the structure of native gp41 on HIV-1 virions. Nevertheless, purified M41 folded in a manner that preserved certain discontinuous epitopes as evidenced by reactivity with human monoclonal antibodies, 98-6, 126-6, and 50-69, previously shown to bind conformational epitopes on native gp41 expressed in eukaryotic cells (Xu et al., 1991, J. Virol. 65: 4832-4838; Chen, 1994, J. Virol. 68:2002-2010). Thus, at least certain regions of native gp41 defined by these antibodies appear to be reproduced in the recombinant fusion protein M41. Furthermore, M41 reacted with a human recombinant Fab (Fab-d) that recognizes a conformational epitope on gp41 and binds HIV-1 virions as well as HIV-1 infected cells but not uninfected cells as analyzed by FACS. Deletion of either helix motif, i.e., DP107 or DP178, of the M41 fusion protein eliminated reactivity with Fab-d. These results indicate that both helical regions, separated by 60 amino acids in the primary sequence, are required to maintain the Fab-d epitope.
8.2.2. Anti-HIV Activity of the Recombinant Ectodomain of GP41
The wild type M41 fusion protein was tested for anti-HIV-1 activity. As explained, supra, synthetic peptides corresponding to the leucine zipper (DP107) and the C-terminal putative helix (DP178) show potent anti-HIV activity. Despite inclusion of both these regions, the recombinant M41 protein did not affect HIV-1 induced membrane fusion at concentrations as high as 50 μM (Table XXV, below).







TABLE XXV







DISRUPTION OF THE LEUCINE ZIPPER OF


GP41 FREES THE ANTI-HIV MOTIF













DP107
DP178
M41
M41-P
M41-PΔ178





Cell fusion
1 μM
 1 nM
>50 μM
83 nM
>50 μM


(IC90)


Fab-D
—
—
3.5 × 10−9
2.5 × 10−8
—


binding (kD)


HIV infec-
1 μM
80 nM
>16 μM
66 nM
 >8 μM


tivity (IC90)









    
    
        The affinity constants of Fab-d binding to the fusion proteins were determined using a protocol described by B. Friguet et al., 1985, J. Immunol. Method. 77:305-319.
        −=No detectable binding of Fab-d to the fusion proteins.
        Antiviral Infectivity Assays. 20 μl of serially diluted virus stock was incubated for 60 minutes at ambient temperature with 20 μl of the indicated concentration of purified recombinant fusion protein in RPMI 1640 containing 10% fetal bovine serum and antibiotics in a 96-well microtiter plate. 20 μl of CEM4 cells at 6×105 cells/ml were added to each well, and cultures were incubated at 37° C. in a humidified CO2 incubator. Cells were cultured for 9 days by the addition of fresh medium every 2 to 3 days. On days 5, 7, and 9 postinfection, supernatant samples were assayed for reverse transcriptase (RT) activity, as described below, to monitor viral replication. The 50% tissue culture infectious dose (TCID50) was calculated for each condition according to the formula of Reed & Muench, 1937, Am. J. Hyg. 27:493-497. RT activity was determined by a modification of the published methods of Goff et al., 1981, J. Virol. 38:239-248 and Willey et al., 1988, J. Virol. 62:139-147 as described in Chen et al., 1993, AIDS Res. Human Retroviruses 9:1079-1086.
    
    


Surprisingly, a single amino acid substitution, proline in place of isoleucine in the middle of the leucine zipper motif, yielded a fusion protein (M41-P) which did exhibit antiviral activity (Table XXV and FIG. 8). As seen in Table XXV, M41-P blocked syncytia formation by 90% at approximately 85 nM and neutralized HIV-1IIIB infection by 90% at approximately 70 nM concentrations. The anti-HIV-1 activity of M41-P appeared to be mediated by the C-terminal helical sequence since deletion of that region from M41-P yielded an inactive fusion protein, M41Δ178 (Table XXV). This interpretation was reinforced by experiments demonstrating that a truncated fusion protein lacking the DP178 sequence, M41178, abrogated the potent anti-fusion activity of the DP178 peptide in a concentration-dependent manner (FIG. 9). The same truncated fusion protein containing the proline mutation disrupting the leucine zipper, M41-PΔ178, was not active in similar competition experiments (FIG. 9). The results indicate that the DP178 peptide associates with a second site on gp41 whose interactive structure is dependent on a wild type leucine zipper sequence. A similar interaction may occur within the wild type fusion protein, M41, and act to form an intramolecular clasp which sequesters the DP178 region, making it unavailable for anti-viral activity.
A specific association between these two domains is also indicated by other human monoclonal Fab-d studies. For example, Fab-d failed to bind either the DP178 peptide or the fusion protein M41178, but its epitope was reconstituted by simply mixing these two reagents together (FIG. 10). Again, the proline mutation in the leucine zipper domain of the fusion protein, M41-PΔ178, failed to reconstitute the epitope in similar mixing experiments.
9. EXAMPLE
Method for Computer-Assisted Identification of DP107-like and DP178-Like Sequences
A number of known coiled-coil sequences have been well described in the literature and contain heptad repeat positioning for each amino acid. Coiled-coil nomenclature labels each of seven amino acids of a heptad repeat A through G, with amino acids A and D tending to be hydrophobic positions. Amino acids E and G tend to be charged. These four positions (A, D, E, and G) form the amphipathic backbone structure of a monomeric alpha-helix. The backbones of two or more amphipathic helices interact with each other to form di-, tri-, tetrameric, etc., coiled-coil structures. In order to begin to design computer search motifs, a series of well characterized coiled coils were chosen including yeast transcription factor GCN4, Influenza Virus hemagglutinin loop 36, and human proto-oncogenes c-Myc, c-Fos, and c-Jun. For each peptide sequence, a strict homology for the A and D positions, and a list of the amino acids which could be excluded for the B, C, E, F, and G positions (because they are not observed in these positions) was determined. Motifs were tailored to the DP107 and DP178 sequences by deducing the most likely possibilities for heptad positioning of the amino acids of HIV-1 Bru DP-107, which is known to have coiled-coil structure, and HIV-1 Bru DP178, which is still structurally undefined. The analysis of each of the sequences is contained in FIG. 12. For example, the motif for GCN4 was designed as follows:

    1. The only amino acids (using standard single letter amino acid codes) found in the A or D positions of GCN4 were [LMNV].
    2. All amino acids were found at B, C, E, F, and G positions except {CFGIMPTW}.
    3. The PESEARCH motif would, therefore, be written as follows:


[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)−
[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)−
[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)−
[LMNV]-{CFGIMPTW}(2)-[LMNV]-{CFGIMPTW}(3)
Translating or reading the motif: “at the first A position either L, M, N, or V must occur; at positions B and C (the next two positions) accept everything except C, F, G. I, M, P, T, or W; at the D position either L, M, N, or V must occur; at positions E, F, and G (the next 3 positions) accept everything except C, F, G, I, M, P, T, or W.” This statement is contained four times in a 28-mer motif and five times in a 35-mer motif. The basic motif key then would be: [LMNV]−{CFGIMPTW}. The motif keys for the remaining well described coiled-coil sequences are summarized in FIG. 12.
The motif design for DP107 and DP178 was slightly different than the 28-mer model sequences described above due to the fact that heptad repeat positions are not defined and the peptides are both longer than 28 residues. FIG. 13 illustrates several possible sequence alignments for both DP107 and DP178 and also includes motif designs based on 28-mer, 35-mer, and full-length peptides. Notice that only slight differences occur in the motifs as the peptides are lengthened. Generally, lengthening the base peptide results in a less stringent motif. This is very useful in broadening the possibilities for identifying DP107- or DP-178-like primary amino acid sequences referred to in this document as “hits”.
In addition to making highly specific motifs for each type peptide sequence to be searched, it is also possible to make “hybrid” motifs. These motifs are made by “crossing” two or more very stringent motifs to make a new search algorithm which will find not only both “parent” motif sequences but also any peptide sequences which have similarities to one, the other, or both “parents”. For example, in FIG. 14 the “parent” sequence of GCN4 is crossed with each of the possible “parent” motifs of DP-107. Now the hybrid motif must contain all of the amino acids found in the A and D positions of both parents, and exclude all of the amino acids not found in either parent at the other positions. The resulting hybrid from crossing GCN4 or [LMNV] {CFGIMPTW} and DP107 (28-mer with the first L in the D position) or [ILQT] {CDFIMPST}, is [ILMNQTV] {CFIMPT}. Notice that now only two basic hybrid motifs exist which cover both framing possibilities, as well as all peptide lengths of the parent DP-107 molecule. FIG. 15 represents the “hybridizations” of GCN4 with DP-178. FIG. 16 represents the “hybridizations” of DP107 and DP178. It is important to keep in mind that the represented motifs, both parent and hybrid, are motif keys and not the depiction of the full-length motif needed to actually do the computer search.
Hybridizations can be performed on any combination of two or more motifs. FIG. 17 summarizes several three-motif hybridizations including GCN4, DP107 (both frames), and DP178 (also both frames). Notice that the resulting motifs are now becoming much more similar to each other. In fact, the first and third hybrid motifs are actually subsets of the second and fourth hybrid motifs respectively. This means that the first and third hybrid motifs are slightly more stringent than the second and fourth. It should also be noted that with only minor changes in these four motifs, or by hybridizing them, a single motif could be obtained which would find all of the sequences. However, it should be remembered that stringency is also reduced. Finally, the most broad-spectrum and least-stringent hybrid motif is described in FIG. 18 which summarizes the hybridization of GCN4, DP107 (both frames), DP178 (both frames), c-Fos, c-Jun, c-Myc, and Flu loop 36.
A special set of motifs was designed based on the fact that DP-178 is located only approximately ten amino acids upstream of the transmembrane spanning region of gp41 and just C-terminal to a proline which separates DP107 and DP178. It has been postulated that DP178 may be an amphipathic helix when membrane associated, and that the proline might aid in the initiation of the helix formation. The same arrangement was observed in Respiratory Syncytial Virus; however, the DP178-like region in this virus also had a leucine zipper just C-terminal to the proline. Therefore, N-terminal proline-leucine zipper motifs were designed to analyze whether any other viruses might contain this same pattern. The motifs are summarized in FIG. 19.
The PC/Gene protein database contains 5879 viral amino acid sequences (library file PVIRUSES; CD-ROM release 11.0). Of these, 1092 are viral enveloped or glycoprotein sequences (library file PVIRUSE1). Tables V through XIV contain lists of protein sequence names and motif hit locations for all the motifs searched.
10. EXAMPLE
Computer-Assisted Identification of DP107 and DP178-Like Sequences in Human Immunodeficiency Virus
FIG. 20 represents search results for HIV-1 BRU isolate gp41 (PC/Gene protein sequence PENV_HV1BR). Notice that the hybrid motif which crosses DP-107 and DP-178 (named 107×178×4; the same motif as found in FIG. 16 found three hits including amino acids 550-599, 636-688, and 796-823. These areas include DP-107 plus eight N-terminal and four C-terminal amino acids; DP178 plus seven N-terminal and ten C-terminal amino acids; and an area inside the transmembrane region (cytoplasmic). FIG. 20 also contains the results obtained from searching with the motif named ALLMOTI5, for which the key is found in FIG. 17 ({CDGHP} {CFP}×5). This motif also found three hits including DP107 (amino acids 510-599), DP178 (615-717), and a cytoplasmic region (772-841). These hits overlap the hits found by the motif 107×178×4 with considerable additional sequences on both the amino and carboxy termini. This is not surprising in that 107×178×4 is a subset of the ALLMOTI5 hybrid motif. Importantly, even though the stringency of ALLMOTI5 is considerably less than 107×178×4, it still selectively identifies the DP107 and DP178 regions of gp41 shown to contain sequences for inhibitory peptides of HIV-1. The results of these two motif searches are summarized in Table V under the PC/Gene protein sequence name PENV HV1BR. The proline-leucine zipper motifs also gave several hits in HIV-1 BRU including 503-525 which is at the very C-terminus of gp120, just upstream of the cleavage site (P7LZIPC and P12LZIPC); and 735-768 in the cytoplasmic domain of gp41 (P23LZIPC). These results are found in Tables VIII, IX, and X under the same sequence name as mentioned above. Notice that the only area of HIV-1 BRU which is predicted by the Lupas algorithm to contain a coiled-coil region, is from amino acids 635-670. This begins eight amino acids N-terminal to the start and ends eight amino acids N-terminal to the end of DP178. DP107, despite the fact that it is a known coiled coil, is not predicted to contain a coiled-coil region using the Lupas method.
11. EXAMPLE
Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Human Respiratory Syncytial Virus
FIG. 21 represents search results for Human Respiratory Syncytial Virus (RSV; Strain A2) fusion glycoprotein F1 (PC/Gene protein sequence name PVGLF_HRSVA). Motif 107×178×4 finds three hits including amino acids 152-202, 213-243, and 488-515. The arrangement of these hits is similar to what is found in HIV-1 except that the motif finds two regions with similarities to DP-178, one just downstream of what would be called the DP107 region or amino acids 213-243, and one just upstream of the transmembrane region (also similar to DP178) or amino acids 488-515. Motif ALLMOTI5 also finds three areas including amino acids 116-202, 267-302, and 506-549. The proline-leucine zipper motifs also gave several hits including amino acids 205-221 and 265-287 (P1LZIPC 265-280, P12LZIPC), and 484-513 (P7LZIPC and P12LZIPC 484-506, P23LZIPC). Notice that the PLZIP motifs also identify regions which share location similarities with DP-178 of HIV-1.
12. EXAMPLE
Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Simian Immunodeficiency Virus
Motif hits for Simian immunodeficiency Virus gp41 (AGM3 isolate; PC/Gene protein sequence name PENV_SIVAG) are shown in FIG. 22. Motif 107×178×4 finds three hits including amino acids 566-593, 597-624, and 703-730. The first two hits only have three amino acids between them and could probably be combined into one hit from 566-624 which would represent a DP107-like hit. Amino acids 703 to 730 would then represent a DP178-like hit. ALLMOTI5 also finds three hits including amino acids 556-628 (DP107-like), 651-699 (DP178-like), and 808-852 which represents the transmembrane spanning region. SIV also has one region from 655-692 with a high propensity to form a coiled coil as predicted by the Lupas algorithm. Both 107×178×4 and ALLMOTI5 motifs find the same region. SIV does not have any PLZIP motif hits in gp41.
The identification of DP178/DP107 analogs for a second SIV isolate (MM251) is demonstrated in the Example presented, below, in Section 19.
13. EXAMPLE
Computer-Assisted Identification of DP107-Like and DP178 Like Sequences in Canine Distemper Virus
Canine Distemper Virus (strain Onderstepoort) fusion glycoprotein F1 (PC/Gene Protein sequence name PVGLF_CDVO) has regions similar to Human RSV which are predicted to be DP107-like and DP178-like (FIG. 23). Motif 107×178×4 highlights one area just C-terminal to the fusion peptide at amino acids 252-293. Amino acids 252-286 are also predicted to be coiled coil using the Lupas algorithm. Almost 100 amino acids C-terminal to the first region is a DP178-like area at residues 340-367. ALLMOTI5 highlights three areas of interest including: amino acids 228-297, which completely overlaps both the Lupas prediction and the DP107-like 107×178×4 hit; residues 340-381, which overlaps the second 107×178×4 hit; and amino acids 568-602, which is DP178-like in that it is located just N-terminal to the transmembrane region. It also overlaps another region (residues 570-602) predicted by the Lupas method to have a high propensity to form a coiled coil. Several PLZIP motifs successfully identified areas of interest including P6 and P12LZIPC which highlight residues 336-357 and 336-361 respectively; P1 and P12LZIPC which find residues 398-414; and P12 and P23LZIPC which find residues 562-589 and 562-592 respectively.
14. EXAMPLE
Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Newcastle Disease Virus
FIG. 24 shows the motif hits found in Newcastle Disease Virus (strain Australia-Victoria/32; PC Gene protein sequence name PVGLF_NDVA). Motif 107×178×4 finds two areas including a DP107-like hit at amino acids 151-178 and a DP178-like hit at residues 426-512. ALLMOTI5 finds three areas including residues 117-182, 231-272, and 426-512. The hits from 426-512 include a region which is predicted by the Lupas method to have a high coiled-coil propensity (460-503). The PLZIP motifs identify only one region of interest at amino acids 273-289 (P1 and 12LZIPC).
15. EXAMPLE
Computer-Assisted Identification of DP107-Like and DP178-Like Sequences in Human Parainfluenza Virus
Both motifs 107×178×4 and ALLMOTI5 exhibit DP107-like hits in the same region, 115-182 and 117-182 respectively, of Human Parainfluenza Virus (strain NIH 47885; PC/Gene protein sequence name PVGLF_p13H4; (FIG. 25). In addition, the two motifs have a DP178-like hit just slightly C-terminal at amino acids 207-241. Both motifs also have DP178-like hits nearer the transmembrane region including amino acids 457-497 and 462-512 respectively. Several PLZIP motif hits are also observed including 283-303 (P5LZIPC), 283-310 (P12LZIPC), 453-474 (P6LZIPC), and 453-481 (P23LZIPC). The Lupas algorithm predicts that amino acids 122-176 may have a propensity to form a coiled-coil.
16. EXAMPLE
Computer-Assisted Identification of DP107-Like and DP178-Like Sequences of Influenza a Virus
FIG. 26 illustrates the Lupas prediction for a coiled coil in Influenza A Virus (strain A/Aichi/2/68) at residues 379-436, as well as the motif hits for 107×178×4 at amino acids 387-453, and for ALLMOTI5 at residues 380-456. Residues 383-471 (38-125 of HA2) were shown by Carr and Kim to be an extended coiled coil when under acidic pH (Carr and Kim, 1993, Cell 73: 823-832). The Lupas algorithm predicts a coiled-coil at residues 379-436. All three methods successfully predicted the region shown to actually have coiled-coil structure; however, ALLMOTI5 predicted the greatest portion of the 88 residue stretch.
17. EXAMPLE
Potential Respiratory Syncytial Virus DP178/DP107 Analogs: CD and Antiviral Characterization
In the Example presented herein, respiratory syncytial virus (RSV) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 11, above, were tested for anti-RSV activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.
17.1 Materials and Methods
Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptides were synthesized according to the methods described, above, in Section 6.1. Peptide concentrations were determined from A280 using Edlehoch's method (1967, Biochemistry 6:1948).
Anti-RSV antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of HEp2 cells acutely infected with RSV (i.e., cells which are infected with a multiplicity of infection of greater than 2) to fuse and cause syncytial formation on a monolayer of uninfected an uninfected line of Hep-2 cells. The lower the observed level of fusion, the greater the antiviral activity of the peptide was determined to be.
Uninfected confluent monolayers of Hep-2 cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics (penicillin/streptomycin; Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.
To prepare Hep2 cells for addition to uninfected cells, cultures of acutely infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected Hep-2 cells.
The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Hep-2 cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 100 acutely RSV-infected Hep2 cells per well. Wells were then incubated at 37° C. for 48 hours.
After incubation, cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of either Crystal Violet stain or XTT. With respect to Crystal Violet, approximately 50 μl 0.25% Crystal Violet stain in methanol were added to each well. The wells were rinsed immediately, to remove excess stain, and were allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.
With respect to XTT (2,3-bis[2-Methoxy-4-nitro-5-sulfophenyl]-2H-tetrazolium-5-carboxyanilide inner salt), 50 μl XTT (1 mg/ml in RPMI buffered with 100 mM HEPES, pH 7.2-7.4, plus 5% DMSO) were added to each well. The OD450/690 was measured (after blanking against growth medium without cells or reagents, and against reagents) according to standard procedures.
Peptides: The peptides characterized in the study presented herein were:
1) peptides T-142 to T-155, as shown in FIGS. 27A-B, and peptides T-22 to T-27, T-68, T-334 and T-371 to T-375 and T-575, as shown in FIG. 27C;
2) peptides T-120 to T-141 and T-576, as shown in FIGS. 27D-E, and peptides T-12, T-13, T-15, T-19, T-28 to T-30, T-66, T-69, T-70 and T-576, as shown in FIG. 27F; and
3) peptides T-67 and T-104 to T-119, as shown in FIGS. 28A-B, and peptides T-71, T-384, T-613 to T-617, T-662 to T-676 and T-730, as shown in FIG. 28C.
The peptides of group 1 represent portions of the RSV F2 protein DP178/107-like region. The peptides of group 2 represent portions of the RSV F1 protein DP107-like region. The peptides of groups 3 represent portions of the RSV F1 protein DP178-like region.
Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used. The IC50 data for each peptide represents the average of several experiments conducted utilizing that peptide.
17.2 Results
The data summarized in FIGS. 27A-C and 28A-C represent antiviral and structural information obtained from peptides derived from the RSV F2 DP178/DP107-like F2 region (FIGS. 27A-C), the RSV F1 DP-107-like region (FIGS. 27D-F) and the RSV DP178-like F1 region (FIGS. 28A-C)
As shown in FIGS. 27A-F, a number of the RSV DP178/DP107-like peptides exhibited a detectable level of antiviral activity. Peptides from the RSV DP178/DP 107-like F2 region (FIGS. 27A-C), for example, T-142 to T-145 and T-334 purified peptides, exhibited detectable levels of antiviral activity, as evidenced by their IC50 values. Further, a number of RSV F1 DP107-like peptides (FIGS. 27D-F) exhibited a sizable level of antiviral activity as purified peptides, including, for example, peptides T-124 to T-127, T-131, T-135 and T-137 to T-139, as demonstrated by their low IC50 values. In addition, CD analysis (FIGS. 27B, 27E) reveals that many of the peptides exhibit some detectable level of helical structure.
The results summarized in FIGS. 28A-C demonstrate that a number of DP178-like purified peptides exhibit a range of potent anti-viral activity. These peptides include, for example, T-67, T-104, T-105 and T-107 to T-119, as listed in FIGS. 28A-B, and T-665 to T-669 and T-671 to T-673, as listed in FIG. 28C. In addition, some of the DP178-like peptides exhibited some level of helicity.
Thus, the computer assisted searches described, hereinabove, successfully identified viral peptide domains that represent highly promising anti-RSV antiviral compounds.
18. EXAMPLE
Potential Human Parainfluenza Virus Type 3 DP178/DP107 Analogs: CD and Antiviral Characterization
In the Example presented herein, human parainfluenza virus type 3 (HPIV3) peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 15, above, were tested for anti-HPIV3 activity. Additionally, circular dichroism (CD) structural analyses were conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that several of these peptides exhibit a substantial helical character.
18.1 Materials and Methods
Structural analyses: Structural analyses consisted of circular dichroism (CD) studies. The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A280 using Edlehoch's method (1967, Biochemistry 6:1948).
Anti-HPIV3 antiviral activity assays: The assay utilized herein tested the ability of the peptides to disrupt the ability of Hep2 cells chronically infected with HPIV3 to fuse and cause syncytial formation on a monolayer of an uninfected line of CV-1W cells. The more potent the lower the observed level of fusion, the greater the antiviral activity of the peptide.
Uninfected confluent monolayers of CV-1W cells were grown in microtiter wells in 3% EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 3%, antibiotics/antimycotics (Gibco BRL Life Technologies Cat. No. 15040-017) added at 1%, and glutamine added at 1%.
To prepare Hep2 cells for addition to uninfected cells, cultures of chronically infected Hep2 cells were washed with DPBS (Dulbecco's Phosphate Buffered Saline w/o calcium or magnesium; Bio Whittaker Cat. No. 17-512F) and cell monolayers were removed with Versene (1:5000; Gibco Life Technologies Cat. No. 15040-017). The cells were spun 10 minutes and resuspended in 3% FBS. Cell counts were performed using a hemacytometer. Persistent cells were added to the uninfected CV-1W cells.
The antiviral assay was conducted by, first, removing all media from the wells containing uninfected CV-1W cells, then adding peptides (at the dilutions described below) in 3% EMEM, and 500 chronically HPIV3-infected Hep2 cells per well. Wells were then incubated at 37° C. for 24 hours.
On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.
Alternatively, instead of Crystal Violet analysis, cells were assayed with XTT, as described, above, in Section 17.1.
Peptides: The peptides characterized in the study presented herein were:

    1) Peptides 157 to 188, as shown in FIGS. 29A-C, and peptides T-38 to T-40, T-42 to T-46 and T-582, as shown in FIGS. 29D-E. These peptides are derived from the DP107 region of the HPIV3 F1 fusion protein (represented by HPF3 107, as shown in FIGS. 29A-B); and
    2) Peptides 189 to 210, as shown in FIGS. 30A-B, and T-269, T-626, T-383 and T-577 to T-579, as shown in FIG. 30C. These peptides are primarily derived from the DP178 region of the HPIV3 F1 fusion protein (represented by HPF3 178, as shown in FIG. 30A). Peptide T-626 contains two mutated amino acid residues. Additionally, peptide T-577 represents F1 amino acids 65-100, T-578 represents F1 amino acids 207-242 and T-579 represents F1 amino acids 273-309.


Each peptide was tested at 2-fold serial dilutions ranging from 500 μg/ml to approximately 500 ng/ml. For each of the assays, a well containing no peptide was also used.
18.2 Results
The data summarized in FIGS. 29A-E and 30A-C represent antiviral and structural information obtained from peptides derived from the HPIV3 fusion protein DP107-like region (FIGS. 29A-E) and the HPIV3 fusion protein DP178-like region (FIGS. 30A-C).
As shown in FIGS. 29A-E, a number of the HPIV3 DP107-like peptides exhibited potent levels of antiviral activity. These peptides include, for example, peptides T-40, T-172 to T-175, T-178, T-184 and T-185.
CD analysis reveals that a number of the peptides exhibit detectable to substantial level of helical structure, which is summarized in FIG. 29C.
The results summarized in FIGS. 30A-C demonstrate that a number of the DP178-like peptides tested exhibit a range of anti-viral activity. These peptides include, for example, peptides 194 to 211, as evidence by their low IC50 values. In fact, peptides 201 to 205 exhibit IC50 values in the nanogram/ml range. In addition, many of the DP178-like peptides exhibited some level of helicity.
Thus, the computer assisted searches described, hereinabove, have successfully identified viral peptide domains that represent highly promising anti-HPIV3 antiviral compounds.
19. EXAMPLE
Computer-Assisted Identification of DP178/DP107 Analogs in Simian Immunodeficiency Virus
FIG. 31 represents search results for SIV isolate MM251 (PC/Genes protein sequence PENV_SIVM2). Both 107×178×4 and ALLMOTI5 search motifs identified two regions with similarities to DP107 and/or DP178.
The peptide regions found by 107×178×4 were located at amino acid residues 156-215 and 277-289. The peptide regions found by ALLMOTI5 were located at amino acid residues 156-219 and 245-286. Both motifs, therefore, identify similar regions.
Interestingly, the first SIV peptide region (i.e., from amino acid residue 156 to approximately amino acid residue 219) correlates with a DP107 region, while the second region identified (i.e., from approximately amino acid residue 245 to approximately amino acid residue 289) correlates with the DP178 region of HIV. In fact, an alignment of SIV isolate MM251 and HIV isolate BRU, followed by a selection of the best peptide matches for HIV DP107 and DP178, reveals that the best matches are found within the peptide regions identified by the 107×178×4 and ALLMOTI5 search motifs.
It should be noted that a potential coiled-coil region at amino acid residues 242-282 is predicted by the Lupas program. This is similar to the observation in HIV in which the coiled-coil is predicted by the Lupas program to be in the DP178 rather than in the DP107 region. It is possible, therefore, that SIV may be similar to HIV in that it may contain a coiled-coil structure in the DP107 region, despite such a structure being missed by the Lupas algorithm. Likewise, it may be that the region corresponding to a DP178 analog in SIV may exhibit an undefined structure, despite the Lupas program's prediction of a coiled-coil structure.
20. EXAMPLE
Computer-Assisted Identification of DP178/DP107 Analogs in Epstein-Barr Virus
The results presented herein describe the identification of DP178/DP107 analogs within two different Epstein-Barr Virus proteins. Epstein-Barr is a human herpes virus which is the causative agent of, for example, infectious mononucleosis (IM), and is also associated with nasopharyngeal carcinomas (NPC), Burkitt's lymphoma and other diseases. The virus predominantly exists in the latent form and is activated by a variety of stimuli.
FIG. 32 depicts the search motif results for the Epstein-Barr Virus (Strain B95-8; PC/Genes protein sequence PVGLB_EBV) glycoprotein gp110 precursor (gp115). The 107×178×4 motif identified two regions of interest, namely the regions covered by amino acid residues 95-122 and 631-658. One PZIP region was identified at amino acid residue 732-752 which is most likely a cytoplasmic region of the protein. The Lupas algorithm predicts a coiled-coil structure for amino acids 657-684. No ALLMOTI5 regions were identified.
FIG. 33 depicts the search motif results for the Zebra (or EB1) trans-activator protein (BZLF1) of the above-identified Epstein-Barr virus. This protein is a transcription factor which represents the primary mediator of viral reactivation. It is a member of the b-ZIP family of transcription factors and shares significant homology with the basic DNA-binding and dimerization domains of the cellular oncogenes c-fos and C/EBP. The Zebra protein functions as a homodimer.
Search results demonstrate that the Zebra protein exhibits a single region which is predicted to be either of DP107 or DP178 similarity, and is found between the known DNA binding and dimerization regions of the protein. Specifically, this region is located at amino acid residues 193-220, as shown in FIG. 33. The Lupas program predicted no coiled-coil regions.
21. EXAMPLE
Computer-Assisted Identification of DP178/DP107 Analogs in Measles Virus
FIG. 34 illustrates the motif search results for the fusion protein F1 of measles virus, strain Edmonston (PC Gene® protein sequence PVGLF_MEASE), successfully identifying DP178/DP107 analogs.
The 107×178×4 motif identifies a single region at amino acid residues 228-262. The ALLMOTI5 search motif identifies three regions, including amino acid residues 116-184, 228-269 and 452-500. Three regions containing proline residues followed by a leucine zipper-like sequence were found beginning at proline residues 214, 286 and 451.
The Lupas program identified two regions it predicted had potential for coiled-coil structure, which include amino acid residues 141-172 and 444-483.
22. EXAMPLE
Computer-Assisted Identification of DP178/DP107 Analogs in Hepatitis B Virus
FIG. 35 depicts the results of a PZIP motif search conducted on the Hepatitis B virus subtype AYW. Two regions of interest within the major surface antigen precursor S protein were identified. The first lies just C-terminal to the proposed fusion peptide of the major surface antigen (Hbs) which is found at amino acid residues 174-191. The second region is located at amino acid residues 233-267. The Lupas program predicts no coiled-coil repeat regions.
In order to test the potential anti-HBV antiviral activity of these D178/DP107 analog regions, peptides derived from area around the analog regions are synthesized, as shown in FIGS. 52A-B. These peptides represent one amino acid peptide “walks” through the putative DP178/DP107 analog regions. The peptides are synthesized according to standard Fmoc chemistry on Rinkamide MBHA resins to provide for carboxy terminal blockade (Chang, C.D. and Meinhofer, J., 1978, Int. J. Pept. Protein Res. 11:246-249; Fields, G. B. and Noble, R. L., 1990, Int. J. Pept. Protein Res. 35:161-214). Following complete synthesis, the peptide amino-terminus is blocked through automated acetylation and the peptide is cleaved with trifluoroacetic acid (TFA) and the appropriate scavengers (King, D. S. et al., 1990, Int. J. Pept. Res. 36:255-266). After cleavage, the peptide is precipitated with ether and dried under vacuum for 24 hours.
The anti-HBV activity of the peptides is tested by utilizing standard assays to determine the test peptide concentration required to cause an acceptable (e.g., 90%) decrease in the amount of viral progeny formed by cells exposed to an HBV viral inoculum. Candidate antivial peptides are further characterized in model systems such as wood chuck tissue culture and animal sytems, prior to testing on humans.
23. EXAMPLE
Computer-Assisted Identification Of DP178/DP107 Analogs in Simian Mason-Pfizer monkey Virus
The results depicted herein illustrate the results of search motifs conducted on the Simian Mason-Pfizer monkey virus. The motifs reveal DP178/DP107 analogs within the enveloped (TM) protein GP20, as shown in FIG. 36.
The 107×178×4 motifs identifies a region at amino acid residues 422-470. The ALLMOTI5 finds a region at amino acid residues 408-474. The Lupas program predicted a coiled-coil structure a amino acids 424-459.
24. EXAMPLE
Computer-Assisted Identification of DP178/DP107 Analogs in Bacterial Proteins
The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to sequences present in proteins of a variety of bacterial species.
FIG. 37 depicts the search motif results for the Pseudomonas aeruginosa fimbrial protein (Pilin). Two regions were identified by motifs 107×178×4 and ALLMOTI5. The regions located at amino acid residues 30-67 and 80-144 were identified by the 107×178×4 motif. The regions at amino acid residues 30-68 and 80-125 were identified by the ALLMOTI5.
FIG. 38 depicts the search motif results for the Pseudomonas gonorrhoeae fimbrial protein (Pilin). A single region was identified by both the 107×178×4 and the ALLMOTI5 motifs. The region located at amino acid residues 66-97 was identified by the 107×178×4 motif. The region located at amino acid residues 66-125 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.
FIG. 39 depicts the search motif results for the Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107×178×4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107×178×4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.
FIG. 40 depicts the search motif results for the Staphylococcus aureus toxic shock syndrome Hemophilus Influenza fimbrial protein (Pilin). A single region was identified by both the 107×178×4 and the ALLMOTI5 motifs. The region located at amino acid residues 102-129 was identified by the 107×178×4 motif. The region located at amino acid residues 102-148 were identified by the ALLMOTI5 search motif. No coiled-coil regions were predicted by the Lupas program.
FIG. 41 summarizes the motif search results conducted on the Staphylococcus aureus enterotoxin Type E protein. These results demonstrate the successful identification of DP178/DP107 analogs corresponding to peptide sequences within this protein, as described below.
The ALLMOTI5 motif identified a region at amino acid residues 22-27. The 107×178×4 motif identified two regions, with the first at amino acid residues 26-69 and the second at 88-115. A P12LZIPC motif search identified two regions, at amino acid residues 163-181 and 230-250.
The Lupas program predicted a region with a high propensity for coiling at amino acid residues 25-54. This sequence is completely contained within the first region identified by both ALLMOTI5 and 107×178×4 motifs.
FIG. 42 depicts the search motif results conducted on a second Staphylococcus aureus toxin, enterotoxin A. Two regions were identified by the ALLMOTI5 motif, at amino acid residues 22-70 and amino acid residues 164-205. The 107×178×4 motif found two regions, the first at amino acid residues 26-69 and the second at amino acid residues 165-192. A P23LZIPC motif search revealed a region at amino acid residues 216-250. No coiled-coil regions were predicted by the Lupas program.
FIG. 43 shows the motif search results conducted on the E. coli heat labile enterotoxin A protein, demonstrating that identification of DP178/DP107 analogs corresponding to peptides located within this protein. Two regions were identified by the ALLMOTI5 motif, with the first residing at amino acid residues 55-115, and the second residing at amino acid residues 216-254. The 107×178×4 motif identified a single region at amino acid residues 78-105. No coiled-coil regions were predicted by the Lupas program.
25. EXAMPLE
Computer-Assisted Identification of DP178/DP107 Analogs Within Various Human Proteins
The results presented herein demonstrate the identification of DP178/DP107 analogs corresponding to peptide sequences present within several different human proteins.
FIG. 44 illustrates the search motif results conducted on the human c-fos oncoprotein. The ALLMOTI5 motif identified a single region at amino acid residues 155-193. The 107×178×4 motif identified one region at amino acid residues 162-193. The Lupas program predicted a region at amino acid residues 148-201 to have coiled-coil structure.
FIG. 45 illustrates the search motif results conducted on the human lupus KU autoantigen protein P70. The ALLMOTI5 motif identified a single region at amino acid residues 229-280. The 107×178×4 motif identified one region at amino acid residues 235-292. The Lupas program predicted a region at amino acid residues 232-267 to have coiled-coil structure.
FIG. 46 illustrates the search motif results conducted on the human zinc finger protein 10. The ALLMOTI5 motif identified a single region at amino acid residues 29-81. The 107×178×4 motif identified one region at amino acid residues 29-56. A P23LZIPC motif search found a single region at amino acid residues 420-457. The Lupas program predicted no coiled-coil regions.
26. EXAMPLE
Potential Measles Virus DP178/DP107 Analogs: CD and Antiviral Characterization
In the Example presented herein, measles (MeV) virus DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9 and 21, above, are tested for anti-MeV activity. Additionally, circular dichroism (CD) structural analyses are conducted on the peptides, as discussed below. It is demonstrated that several of the identified peptides exhibit potent antiviral capability. Additionally, it is shown that none of the these peptides exhibit a substantial helical character.
26.1 Materials and Methods
Structural analyses: The CD spectra were measured in a 10 mM sodium phosphate, 150 mM sodium chloride, pH 7.0, buffer at approximately 10 mM concentrations, using a 1 cm pathlength cell on a Jobin/Yvon Autodichrograph Mark V CD spectrophotometer. Peptide concentrations were determined from A280 using Edlehoch's method (1967, Biochemistry 6:1948).
Anti-MeV antiviral activity syncytial reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of Vero cells acutely infected with MeV (i.e., cells which are infected with a multiplicity of infection of 2-3) to fuse and cause syncytial formation on a monolayer of an uninfected line of Vero cells. The more potent the peptide, the lower the observed level of fusion, the greater the antiviral activity of the peptide.
Uninfected confluent monolayers of Vero cells were grown in microtiter wells in 10% FBS EMEM (Eagle Minimum Essential Medium w/o L-glutamine [Bio Whittaker Cat. No. 12-125F], with fetal bovine serum [FBS; which had been heat inactivated for 30 minutes at 56° C.; Bio Whittaker Cat. No. 14-501F) supplemented at 10%, antibiotics/antimycotics (Bio Whittaker Cat. No. 17-602E) added at 1%, and glutamine added at 1%.
To prepare acutely infected Vero cells for addition to the uninfected cells, cultures of acutely infected Vero cells were washed twice with HBSS (Bio Whittaker Cat. No. 10-543F) and cell monolayers were removed with trypsin (Bio Whittaker Cat. No. 17-161E). Once cells detached, media was added, any remaining clumps of cells were dispersed, and hemacytometer cell counts were performed.
The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and 50-100 acutely MeV-infected Vero cells per well. Wells were then incubated at 37° C. for a maximum of 18 hours.
On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.
Anti-MeV antiviral activity plaque reduction assay: The assay utilized herein tested the ability of the peptides to disrupt the ability of MeV to infect permissive, uninfected Vero cells, leading to the infected cells' fusing with uninfected cells to produce syncytia. The lower the observed level of syncytial formation, the greater the antiviral activity of the peptide.
Monolayers of uninfected Vero cells are grown as described above.
The antiviral assay was conducted by, first, removing all media from the wells containing uninfected Vero cells, then adding peptides (at the dilutions described below) in 10% FBS EMEM, and MeV stock virus at a final concentration of 30 plaque forming units (PFU) per well. Wells were then incubated at 37° C. for a minimum of 36 hours and a maximum of 48 hours.
On day 2, after cells in control wells were checked for fusion centers, media was removed from the wells, followed by addition, to each well, of approximately 50 μl 0.25% Crystal Violet stain in methanol. Wells were rinsed twice with water immediately, to remove excess stain and were then allowed to dry. The number of syncytia per well were then counted, using a dissecting microscope.
Peptides: The peptides characterized in the study presented herein were peptides T-252A0 to T-256A0, T-257B1/C1, and T-258B1 to T-265B0, and T-266A0 to T-268A0, as shown in FIG. 47. These peptides represent a walk through the DP178-like region of the MeV fusion protein.
Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.
26.2 Results
The data summarized in FIGS. 47A-B represent antiviral and structural information obtained via “peptide walks” through the DP178-like region of the MeV fusion protein.
As shown in FIGS. 47A-B, the MeV DP178-like peptides exhibited a range of antiviral activity as crude peptides. Several of these peptides were chosen for purification and further antiviral characterization. The IC50 values for such peptides were determined, as shown in FIG. 47B, and ranged from 1.35 μg/ml (T-257B1/C1) to 0.072 μg/ml (T-265B1). None of the DP178-like peptides showed, by CD analysis, a detectable level of helicity.
Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-MeV antiviral compounds.
27. EXAMPLE
Potential SIV DP178/DP107 Analogs: Antiviral Characterization
In the Example presented herein, simian immunodeficiency virus (SIV) DP178-like peptides identified by utilizing the computer-assisted search motifs described in the Examples presented in Sections 9, 12 and 19, above, were tested for anti-SIV activity. It is demonstrated that several of the identified peptides exhibit potent antiviral capability.
27.1 Materials and Methods
Anti-SIV antiviral assays: The assay utilized herein were as reported in Langolis et al. (Langolis, A. J. et al., 1991, AIDS Research and Human Retroviruses 7:713-720).
Peptides: The peptides characterized in the study presented herein were peptides T-391 to T-400, as shown in FIGS. 48A-B. These peptides represent a walk through the DP178-like region of the SIV TM protein.
Each peptide was tested at 2-fold serial dilutions ranging from 100 μg/ml to approximately 100 ng/ml. For each of the assays, a well containing no peptide was also used.
27.2 Results
The data summarized in FIGS. 48A-B represent antiviral information obtained via “peptide walks” through the DPI 78-like region of the SIV TM protein.
As shown in FIG. 48 FIGS. 48A-B, peptides T-391 to T-400 were tested and exhibited a potent antiviral activity as crude peptides.
Thus, the computer assisted searches described, hereinabove, as in for example, the Example presented in Section 9, for example, successfully identified viral peptide domains that represent highly promising anti-SIV antiviral compounds.
28. EXAMPLE
Anti-Viral Activity of DP107 and DP-178 Peptide Truncations and Mutations
The Example presented in this Section represents a study of the antiviral activity of DP107 and DP178 truncations and mutations. It is demonstrated that several of these DP107 and DP178 modified peptides exhibit substantial antiviral activity.
28.1 Materials and Methods
Anti-HIV assays: The antiviral assays performed were as those described, above, in Section 6.1. Assays utilized HIV-1/IIIb and/or HIV-2 NIHZ isolates. Purified peptides were used, unless otherwise noted in FIGS. 49A-L.
Peptides: The peptides characterized in the study presented herein were:

    
    
        1) FIGS. 49A-L present peptides derived from the region around and containing the DP178 region of the HIV-1 BRU isolate. Specifically, this region spanned from gp41 amino acid residue 615 to amino acid residue 717. The peptides listed contain truncations of this region and/or mutations which vary from the DP178 amino acid sequence. Further, certain of the peptides have had amino- and/or carboxy-terminal groups either added or removed, as indicated in the figures; and
        2) FIGS. 50A-B present peptides which represent truncations of DP107 and/or the gp41 region surrounding the DP107 amino acid sequence of HIV-1 BRU isolate. Certain of the peptides are unblocked or biotinylated, as indicated in the figure.
    
    


Blocked peptides contained an acyl N-terminus and an amido C-terminus.
28.2 Results
Anti-HIV antiviral data was obtained with the group 1 DP178-derived peptides listed in FIGS. 49A-L. The full-length, non-mutant DP178 peptide (referred to in FIGS. 49A-L as T20) results shown are for 4 ng/ml.
In FIGS. 49A-D, a number of the DP178 truncations exhibited a high level of antiviral activity, as evidenced by their low IC50 values. These include, for example, test peptides T-50, T-624, T-636 to T-641, T-645 to T-650, T-652 to T-654 and T-656. T-50 represents a test peptide which contains a point mutation (see the “G” glycine residue substitution for a “H” histidine residue in FIG. 49A). The HIV-1-derived test peptides exhibited a distinct strain-specific antiviral activity, in that none of the peptides tested on the HIV-2 NIHZ isolate demonstrated appreciable anti-HIV-2 antiviral activity.
Among the peptides listed in FIGS. 49E-H, test peptides representing the amino (T-4) and carboxy (T-3) terminal halves of DP178 were tested. The amino terminal peptide was not active (IC50=3 μg/ml), whereas the carboxy terminal peptide showed potent antiviral activity (IC50=3 μg/ml). A number of additional test peptides also exhibited a high level of antiviral activity. These included, for example, T-61/T-102, T-217 to T-221, T-235, T-381, T-677, T-377, T-590, T-378, T-591, T-271 to T-272, T-611, T-222 to T-223 and T-60/T-224. Certain of the antiviral peptides contain point mutations and/or amino acid residue additions which vary from the DP178 amino acid sequence.
In FIGS. 49I-L, point mutations and/or amino and/or carboxy-terminal modifications are introduced into the DP178 amino acid sequence itself. As shown in the figures, the majority of the test peptides listed exhibit potent antiviral activity.
Truncations of the DP107 peptide (referred to in FIGS. 50A-B as T21) were also produced and tested, as shown in FIGS. 50A-B. FIGS. 50A-B also present data concerning blocked and unblocked peptides which contain additional amino acid residues from the gp41 region in which the DP107 sequence resides. Most of these peptides showed antiviral activity, as evidenced by their low IC50 values.
Thus, the results presented in this Section demonstrate that not only do the full length DP107 and DP178 peptides exhibit potent antiviral activity, but truncations and/or mutant versions of these peptides can also possess substantial antiviral character.
29: EXAMPLE
Potential Epstein-Barr DP178/DP107 Analogs: Antiviral Characterization
In the Example presented herein, peptides derived from the Epstein-Barr (EBV) DP-178/DP107 analog region of the Zebra protein identified, above, in the Example presented in Section 20 are described and tested for anti-EBV activity. It is demonstrated that among these peptides are ones which exhibit potential anti-viral activity.
29.1 Materials and Methods
Electrophoretic Mobility Shift Assays (EMSA): Briefly, an EBV Zebra protein was synthesized utilizing SP6 RNA polymerase in vitro transcription and wheat germ in vitro translation systems (Promega Corporation recommendations; Butler, E. T. and Chamberlain, M. J., 1984, J. Biol. Chem. 257:5772; Pelham, H. R. B. and Jackson, R. J., 1976, Eur. J. Biochem. 67:247). The in vitro translated Zebra protein was then preincubated with increasing amounts of peptide up to 250 ng/ml prior to the addition of 10,000 to 20,000 c.p.m. of a 32P-labeled Zebra response element DNA fragment. After a 20 minute incubation in the presence of the response element, the reaction was analyzed on a 4% non-denaturing polyacrylamide gel, followed by autoradiography, utilizing standard gel-shift procedures. The ability of a test peptide to prevent Zebra homodimer DNA binding was assayed by the peptide's ability to abolish the response element gel migration retardation characteristic of a protein-bound nucleic acid molecule.
Peptides: The peptides characterized in this study represent peptide walks through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as shown in FIG. 33. Specifically, the peptide walks covered the region from amino acid residue 173 to amino acid residue 246 of the EBV Zebra protein.
Each of the tested peptides were analyzed at a range of concentrations, with 150 ng/ml being the lowest concentration at which any of the peptides exerted an inhibitory effect.
29.2 Results
The EBV Zebra protein transcription factor contains a DP178/DP107 analog region, as demonstrated in the Example presented, above, in Section 20. This protein appears to be the primary factor responsible for the reactivation capability of the virus. A method by which the DNA-binding function of the Zebra virus may be abolished may, therefore, represent an effective antiviral technique. In order to identify potential anti-EBV DP178/DP107 peptides, therefore, peptides derived from the region identified in Section 20, above, were tested for their ability to inhibit Zebra protein DNA binding.
The test peptides' ability to inhibit Zebra protein DNA binding was assayed via the EMSA assays described, above, in Section 28.1. The data summarized in FIGS. 51A-C present the results of EMSA assays of the listed EBV test peptides. These peptides represent amino acid “walks” through the region containing, and flanked on both sides by, the DP178/DP107 analog region identified in the Example presented in Section 20, above, and shown as in FIG. 33. As shown in FIGS. 51A-C, the region from which these peptides are derived lies between EBV Zebra protein amino acid residue 173 to 246. A number of the test peptides which were assayed exhibited an ability to inhibit Zebra protein homodimer DNA binding, including 439, 441, 444 and 445.
Those peptides which exhibit an ability to inhibit Zebra protein DNA binding represent potential anti-EBV antiviral compounds whose ability to inhibit EBV infection can be further characterized.
The present invention is not to be limited in scope by the specific embodiments described which are intended as single illustrations of individual aspects of the invention, and functionally equivalent methods and components are within the scope of the invention. Indeed, various modifications of the invention, in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims.

## Claims

1. A method for the inhibition of transmission of a hepatitis B virus to a cell, comprising contacting the virus, in the presence of the cell, with an effective concentration of a peptide having the formula:
X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQSP-Z;
X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGT-Z;
X-LLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTT-Z;
X-LVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTV-Z;
X-LQAGFFLLTRILTIPQSLDSWWTSLNGLGGTTVCL-Z;
X-QAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLG-Z;
X-AGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQ-Z;
X-GFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQN-Z;
X-FFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNS-Z;
X-FLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQ-Z;
X-LLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS-Z;
X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLEPGSSTTSTGPCRTCMTT-Z,
X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGML-Z;
X-GYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLP-Z
X-YRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z;
X-RWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z;
X-WMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCP-Z;
X-MCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPI-Z;
X-CLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLI-Z;
X-LRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIP-Z;
X-RRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPG-Z;
X-RFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS-Z;
X-FIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSS-Z;
IIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSST-Z
X-IFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTT-Z:
X-FLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTS-Z:
X-LFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTST-Z:
X-FILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTG-Z;
X-ILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGP-Z:
X-LLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPC-Z;
X-LLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCR-Z;
X-LCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRT-Z;
X-CLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTC-Z;
X-LIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCM-Z; or
X-IFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCMT-Z;
(SEQ ID NOS: 239-273, respectively)

in which:
amino acid residues are presented by the single-letter code;
X comprises an amino group, an acetyl group, a 9-fluorenylmethoxy-carbonyl group, a hydrophobic group, or a macromolecule carrier group;
Z comprises a carboxyl group, an amido group, a hydrophobic group, or a macromolecular carrier group for an effective period of time so that infection of the cell by the virus is inhibited.

2. The method of claim 1 wherein the peptide has the formula
X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQSP-Z (SEQ ID NO: 239).

3. The method of claim 1 wherein the peptide has the formula
X-PLLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGT-Z (SEQ ID NO: 240).

4. The method of claim 1 wherein the peptide has the formula
X-LLVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTT-Z (SEQ ID NO: 241).

5. The method of claim 1 wherein the peptide has the formula
X-LVLQAGFFLLTRILTIPQSLDSWWTSLNFLGGTTV-Z (SEQ ID NO: 242).

6. The method of claim 1 wherein the peptide has the formula
X-LQAGFFLLTRILTIPQSLDSWWTSLNGLGGTTVCL-Z (SEQ ID NO: 243).

7. The method of claim 1 wherein the peptide has the formula
X-QAGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLG-Z (SEQ ID NO: 244).

8. The method of claim 1 wherein the peptide has the formula
X-AGFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQ-Z (SEQ ID NO: 245).

9. The method of claim 1 wherein the peptide has the formula
X-GFFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQN-Z (SEQ ID NO: 246).

10. The method of claim 1 wherein the peptide has the formula
X-FFLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNS-Z (SEQ ID NO: 247).

11. The method of claim 1 whereint he peptide has the formula
X-FLLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQ-Z (SEQ ID NO: 248).

12. The method of claim 1 wherein the peptide has the formula
S-LLTRILTIPQSLDSWWTSLNFLGGTTVCLGQNSQS-Z (SEQ ID NO: 249).

13. The method of claim 1 wherein the peptide has the formula
X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTSTG PCRTCMTT-Z (SEQ ID NO: 250).

14. The method of claim 1 wherein the peptide has the formula
X-PGYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGML-Z (SEQ ID NO: 251).

15. The method of claim 1 wherein the peptide has the formula
X-GYRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLP-Z (SEQ ID NO: 252).

16. The method of claim 1 wherein the peptide has the formula
X-YRWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPV-Z (SEQ ID NO: 253).

17. The method of claim 1 wherein the peptide has the formula
X-RWMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVC-Z (SEQ ID NO: 254).

18. The method of claim 1 wherein the peptide has the formula
X-WMCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCP-Z (SEQ ID NO: 255).

19. The method of claim 1 wherein the peptide has the formula
X-MCLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPI-Z (SEQ ID NO: 256).

20. The method of claim 1 wherein the peptide has the formula
X-CLRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLI-Z (SEQ ID NO: 257).

21. The method of claim 1 wherein the peptide has the formula
X-LRRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIP-Z (SEQ ID NO: 258).

22. The method of claim 1 wherein the peptide has the formula
X-RRFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPG-Z (SEQ ID NO: 259).

23. The method of claim 1 wherein the peptide has the formula
X-RFIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGS-Z (SEQ ID NO: 260).

24. The method of claim 1 wherein the peptide has the formula
X-FIIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSS-Z (SEQ ID NO: 261).

25. The method of claim 1 wherein the peptide has the formula
X-IIFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSST-Z (SEQ ID NO: 262).

26. The method of claim 1 wherein the peptide has the formula
X-IFLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTT-Z (SEQ ID NO: 263).

27. The method of claim 1 wherein the peptide has the formula
X-FLFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTS-Z (SEQ ID NO: 264).

28. The method of claim 1 wherein the peptide has the formula
X-LFILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTST-Z (SEQ ID NO: 265).

29. The method of claim 1 wherein the peptide has the formula
X-FILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTG-Z (SEQ ID NO: 266).

30. The method of claim 1 wherein the peptide has the formula
X-ILLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGP-Z (SEQ ID NO: 267).

31. The method of claim 1 wherein the peptide has the formula
X-LLLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPC-Z (SEQ ID NO: 268).

32. The method of claim 1 wherein the peptide has the formula
X-LLCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCR-Z (SEQ ID NO: 269).

33. The method of claim 1 wherein the peptide has the formula
X-LCLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRT-Z (SEQ ID NO: 270).

34. The method of claim 1 wherein the peptide has the formula
X-CLIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTC-Z (SEQ ID NO: 271).

35. The method of claim 1 wherein the peptide has the formula
X-LIFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCM-Z (SEQ ID NO: 272).

36. The method of claim 1 wherein the peptide has the formula
X-IFLLVLLDYQGMLPVCPLIPGSSTTSTGPCRTCMT-Z (SEQ ID NO: 273).

37. The method of claim 1 wherein X is an acetyl group, and Z is an amido group.