# Patent

## Title
Enzymic method for the enantioselective reduction of keto compounds

## Abstract

The invention relates to an enzymatic method for the enantioselective reduction of organic keto compounds to the corresponding chiral hydroxy compounds, an alcohol dehydrogenase from Lactobacillus minor and a method for the enantioselective production of (S)-hydroxy compounds from a racemate.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is a continuation of co-pending U.S. application Ser. No. 10/475,150 assigned a filing date of Jan. 12, 2004, now abandoned, which is hereby incorporated by reference in its entirety. This application further claims priority to its parent, German patent application no. 101 19 274.6 filed Apr. 20, 2001, and PCT/EP02/04143 filed Apr. 15, 2002, which are both hereby incorporated by reference herein in their entirety.


FIELD OF THE INVENTION
The present invention relates to an enzymic method for the enantioselective reduction of organic keto compounds to give the corresponding chiral hydroxy compounds, to an alcohol dehydrogenase from Lactobacillus minor and to an enzymic method for enantioselectively obtaining (S)-hydroxy compound from a racemate.
BACKGROUND OF THE INVENTION
Optically active hydroxy compounds are valuable synthetic building blocks for the preparation of a multiplicity of pharmacologically important compounds. These compounds are often difficult to prepare by conventional chemical methods and only rarely attain the enantiomeric purity required for pharmacological applications. Therefore, biotechnological methods are usually employed in preparing chiral compounds, the stereoselective reaction being carried out either by whole microorganisms or using isolated enzymes.
The use of isolated enzymes has often proved advantageous here, since higher yields and a higher enantiomeric purity are usually attainable by using such enzymes.
Dehydrogenases and in particular alcohol dehydrogenases are valuable catalysts for obtaining chiral products by stereoselective reduction of organic keto compounds to the corresponding chiral alcohols. Known enzymes are essentially the corresponding enzymes from yeast, equine liver or Thermoanaerobium brockii. These enzymes require NADH (nicotine adenine dinucleotide) or NADPH (nicotine adenine dinucleotide phosphate) as coenzyme. Other examples of known alcohol dehydrogenases are an (S)-specific alcohol dehydrogenase from Rhodococcus erythropolis and an (R)-specific alcohol dehydrogenase from the genus Lactobacillus. Both enzyme types have a broad spectrum of keto compound substrates and have high enantioselectivity. The alcohol dehydrogenases from Lactobacillus kefir (DE 40 14 573) and Lactobacillus brevis (DE 196 10 984) are particularly suitable for obtaining chiral (R)-alcohols.
However, the disadvantages of employing alcohol dehydrogenases are the low enzyme stability and enzyme activity of alcohol dehydrogenases in organic solvents and the frequently only poor water solubility of the keto compounds to be reduced. Another limiting factor for employing alcohol dehydrogenases in organic solvents is furthermore the necessary use of NADP or NAD as cofactor requirement, since the cofactor (NADP, NAD) is water-soluble and is regenerated by economical methods.
It is the object of the invention to improve said disadvantages by modifying the method conditions. This object is achieved according to the invention by using a two-phase system comprising an organic solvent, alcohol dehydrogenase, water, cofactor and keto compound.
The method of the invention has a long stability time due to the enzyme-stabilizing action of the solvent, an enantiomeric purity of more than 99.9% of the prepared chiral hydroxy compounds and a high yield based on the amount of keto compound used.
BRIEF DESCRIPTION OF THE INVENTION
The method of the invention therefore relates to a method for the enantioselective reduction of a keto compound of the formula I

R1—C(O)—R2  (I)

where R1 and R2 are, independently of one another, identical or different and are

    
    
        hydrogen,
        1. —(C1-C20)-alkyl in which alkyl is straight-chained or branched,
        2. —(C2-C20)-alkenyl in which alkenyl is straight-chained or branched and, optionally, comprises one, two, three or four double bonds,
        4. —(C2-C20)-alkynyl in which alkynyl is straight-chained or branched and, optionally, comprises one, two, three or four triple bonds,
        5. —(C6-C14)-aryl,
        6. —(C1-C8)-alkyl-(C6-C14)-aryl or
        7. R1 and R2 form in combination with the —C(O) radical a —(C6-C14)-aryl or a —(C5-C14)-heterocycle,
        
            where the radicals defined above under 1. to 7. are unsubstituted or, independently of one another, mono- to trisubstituted by
            a) —OH,
            b) halogen such as fluorine, chlorine, bromine or iodine,
            c) —NO2,
            d) —C(O)—O—(C1-C20)-alkyl in which alkyl is linear or branched and unsubstituted or mono- to trisubstituted by halogen, hydroxyl, amino or nitro, or
            e) —(C5-C14)-heterocycle which is unsubstituted or mono- to trisubstituted by halogen, hydroxyl, amino or nitro, characterized in that
        
        
    
    
    a) the compound of the formula I, alcohol dehydrogenase, water, cofactor and an organic solvent having a logP of from 0.5 to 4.0 are incubated
    b) in a two-phase system and
    c) the chiral hydroxy compound is isolated.




DETAILED DESCRIPTION OF THE INVENTION
Carbon atoms in the ring. Examples of —(C6-C14)-aryl radicals are phenyl, naphthyl. The term aryl means aromatic carbon radicals having from 6 to 14, for example 1-naphthyl, 2-naphthyl, biphenylyl, for example 2-biphenylyl, 3-biphenylyl and 4-biphenylyl, anthryl or fluorenyl. Preferred aryl radicals are biphenylyl radicals, naphthyl radicals and in particular phenyl radicals. The term “halogen” means an element of the series fluorine, chlorine, bromine or iodine. The term “—(C1-C20)-alkyl” means a hydrocarbon radical whose carbon chain is straight-chained or branched and comprises from 1 to 20 carbon atoms.
The term “—(C5-C14)-heterocycle” represents a monocyclic or bicyclic 5-membered to 14-membered heterocyclic ring which is partially or completely saturated. Examples of heteroatoms are N, O and S. Examples of the terms —(C5-C14)-heterocycle are radicals derived from pyrrole, furan, thiophene, imidazole, pyrazole, oxazole, isoxazole, thiazole, isothiazole, tetrazole, 1,2,3,5-oxathiadiazole 2-oxides, triazolones, oxadiazolones, isoxazolones, oxadiazolidinediones, triazoles, which are substituted by F, —CN, —CF3 or —C(O)—O—(C1-C4)-alkyl, 3-hydroxypyrro-2,4-diones, 5-oxo-1,2,4-thiadiazoles, pyridine, pyrazine, pyrimidine, indole, isoindole, indazole, phthalazine, quinoline, isoquinoline, quinoxaline, quinazoline, cinnoline, carboline and benzo-fused, cyclopenta-, cyclohexa- or cyclohepta-fused derivatives of these heterocycles. Particular preference is given to the radicals 2- or 3-pyrrolyl, phenylpyrrolyl such as 4- or 5-phenyl-2-pyrrolyl, 2-furyl, 2-thienyl, 4-imidazolyl, methylimidazolyl, for example 1-methyl-2-, -4- or -5-imidazolyl, 1,3-thiazol-2-yl, 2-pyridyl, 3-pyridyl, 4-pyridyl, 2-, 3- or 4-pyridyl N-oxide, 2-pyrazinyl, 2-, 4- or 5-pyrimidinyl, 2-, 3- or 5-indolyl, substituted 2-indolyl, for example 1-methyl-, 5-methyl-, 5-methoxy-, 5-benzyloxy-, 5-chloro- or 4,5-dimethyl-2-indolyl, 1-benzyl-2- or -3-indolyl, 4,5,6,7-tetrahydro-2-indolyl, cyclohepta[b]-5-pyrrolyl, 2-, 3- or 4-quinolyl, 1-, 3- or 4-isoquinolyl, 1-oxo-1,2-dihydro-3-isoquinolyl, 2-quinoxalinyl, 2-benzofuranyl, 2-benzothienyl, 2-benzoxazolyl or benzothiazolyl or dihydropyridinyl, pyrrolidinyl, for example 2- or 3-(N-methylpyrrolidinyl), piperazinyl, morpholinyl, thiomorpholinyl, tetrahydrothienyl or benzodioxolanyl.
Preferred compounds of the formula I are ethyl 4-chloro-3-oxo-butanoate, acetophenone, methyl acetoacetate, ethyl 2-oxo-4-phenylbutyrate, 2,5-hexanedione, ethyl pyruvate and 2-octanone, preferably ethyl 4-chloro-3-oxobutanoate. The compounds of the formula I are used in the method of the invention in an amount of from 2% to 30%, based on the total volume, preferably from 10% to 25%, in particular from 15% to 22%.
Preference is given to adding to the water a buffer, for example potassium phosphate buffer, Tris/HCl buffer or triethanolamine buffer, having a pH of from 5 to 10, preferably a pH of from 6 to 9. The buffer concentration is from 10 mM to 150 mM, preferably from 90 mM to 110 mM, in particular 100 mM. The buffer additionally also contains magnesium ions, for example MgCl2, at a concentration of from 0.2 mM to 10 mM, preferably from 0.5 to 2 mM, in particular 1 mM.
The temperature is, for example, from about 10° C. to 70° C., preferably from 30° C. to 60° C.
The organic solvents that can be used according to the invention preferably have a logP of from 0.6 to 2.0, in particular from 0.6 to 1.9, particularly preferably from 0.63 to 1.75. Examples of preferred organic solvents are diethyl ether, tert-butyl methyl ether, diisopropyl ether, dibutyl ether and ethyl acetate, in particular ethyl acetate. Ethyl acetate may be used, for example, in an amount of from 1% to 90%, based on the total volume of the reaction mixture, preferably from 15% to 60%, in particular from 20% to 50%.
The ratio of organic solvent to water is from 9 to 1 to 1 to 9, preferably from 1 to 1 to 1 to 3.
One liquid phase of the two-phase system of the invention is water and the second liquid phase is the organic solvent. Optionally, there may also still be a solid or another liquid phase produced, for example, by incompletely dissolved alcohol dehydrogenase or by the compound of the formula I. Preference, however, is given to two liquid phases without solid phase. The two liquid phases are preferably mixed mechanically so as to generate large surfaces between the two liquid phases.
The concentration of the NADPH or NADH cofactor, based on the aqueous phase, is from 0.05 mM to 0.25 mM, in particular from 0.06 mM to 0.2 mM.
Preference is given to using in the method of the invention also another stabilizer of alcohol dehydrogenase. Examples of suitable stabilizers are glycerol, sorbitol or dimethyl sulfoxide (DMSO).
The amount of glycerol is from 5% to 30%, based on the volume of the total mixture. Preferred amounts of glycerol are from 10% to 20%, in particular 20%.
It is possible to add in the method of the invention additionally isopropanol in order to regenerate the NADH or NADPH consumed. For example, alcohol dehydrogenase converts the isopropanol and NADP to NADPH and acetone.
The amount of isopropanol used is from 5% to 30%, based on the volume of the total mixture. Preferred amounts of isopropanol are from 10% to 20%, in particular 10%.
Examples of suitable alcohol dehydrogenases are derived from yeast, equine liver or Rhodococcus erythropolis, said enzymes requiring NADH as coenzyme, or from Thermoanaerobium brockii, Lactobacillus kefir or Lactobacillus brevis, the latter enzymes requiring NADPH as coenzyme.
If, for example, an alcohol dehydrogenases of yeast, equine liver, Thermoanaerobium brockii or Rhodococcus erythropolis is used in the method of the invention, then the corresponding (S)-hydroxy compound is obtained from the compound of the formula I. If, for example, an alcohol dehydrogenases of Lactobacillus kefir or Lactobacillus brevis is used in the method of the invention, then the corresponding (R)-hydroxy compound is obtained from the compound of the formula I.
The alcohol dehydrogenase may be used in the method of the invention either in completely purified or in partially purified form or when inside cells. The cells used here may be in native, permeabilized or lysed form.
The volume activity of the alcohol dehydrogenase used is from 100 units/ml (U/ml) to 2000 U/ml, preferably about 800 U/ml, with a protein content of about 20 mg/ml to 22 mg/ml. The alcohol dehydrogenase preferably used has a specific activity of from about 35 to 40 U/mg of protein. From 20 000 to 200 000 U, preferably about 100 000 U, of alcohol dehydrogenase are used per kg of compound of the formula I to be converted. The enzyme unit 1 U corresponds to the amount of enzyme required in order to convert 1 μmol of the compound of the formula I per minute (min).
The method of the invention is carried out, for example, in a closed reaction vessel made of glass or metal. For this purpose, the components are transferred individually into the reaction vessel and stirred, for example, under a nitrogen or air atmosphere stirring. The reaction time is from 1 day to 14 days, preferably from 4 to 7 days, depending on the substrate and the compound of the formula I used.
The reaction mixture is subsequently worked up. For this purpose, the aqueous phase is removed and the ethyl acetate phase is filtered. The aqueous phase can, optionally, be extracted once more and worked up further like the ethyl acetate phase. This is followed by evaporating the filtered phase under reduced pressure. This results, for example, in the product ethyl 4-chloro-3-(S)-hydroxybutanoate which has an enantiomeric purity of more than 99.9% and is essentially free of the reactant ethyl 4-chloro-3-oxo-butanoate. After distillation of the product, the total yield of the processes is from 82% to 88%, based on the amount of reactant used.
Surprisingly, the organic solvents having a logP of from 0 to 4 demonstrate a stabilizing action on alcohol dehydrogenase, while the prior art advises against the use of the two-phase systems with organic solvents (M. R. Kula, U. Kragel; chapter 28, Dehydrogenases in Synthesis of Chiral Compounds; R. N. Patel, Stereoselective Biocatalyses, 2000; Peters J. 9. Dehydrogenases-Characteristics, Design of Reaction Conditions, and Application, In: H. J. Rehm, G. Reed Biotechnology, Vol. 3, Bioprocessing, VCH Weinheim, 1993; J. Lynda et al., Solvent selection strategies for extractive Biocatalysis, Biotechnol. Prog. 1991, 7, pages 116-124). The organic phase used in the method of the invention is ethyl acetate, said, organic phase serving on the one hand as reservoir for the compound of the formula I but also the reaction product, the chiral hydroxy compound, being simultaneously extracted from the aqueous phase.
In contrast to the prior art, the use of organic solvents having a log-P value of from 0 to 3 results in an additional stabilization of alcohol dehydrogenase, which increases with time. In the prior art, organic solvents having a log-P value (logarithm of the octanol/water distribution coefficient) of from 0 to 2, in particular, have a particularly destabilizing action on enzymes and are thus hardly considered as organic phase in the two-phase system (K. Faber, Biotransformations in organic chemistry, 3rd edition 1997, Springer Verlag, chapter 3. to 3.17).
The invention further relates to Lactobacillus minor alcohol dehydrogenase which has a high temperature optimum. Lactobacillus minor alcohol dehydrogenase has the DNA sequence according to SEQ ID NO: 3 and the amino acid sequence according to SEQ ID NO: 4 according to the attached sequence protocol. Said Lactobacillus minor alcohol dehydrogenase is R-specific, and it is possible, for example, to obtain from a compound of the formula I the corresponding (R)-hydroxy compound. Surprisingly, the enantioselective alcohol dehydrogenase from Lactobacillus minor can be overexpressed in Escherichia coli RB 791, while alcohol dehydrogenases of other species of the genus Lactobacillus were expressed only to a substantially lower extent. This is all the more surprising, since the wild-type strain of Lactobacillus minor itself expresses only very small amounts of alcohol dehydrogenase which was therefore not detectable by common screening methods (whole cell biotransformation, activity assay). It was therefore very surprising that it was possible to clone an R-enantioselective alcohol dehydrogenase from Lactobacillus minor and to overexpress it in Escherichia coli to such an extraordinarily large extent (50% of the cellular proteins of the clone, 20 000 units/g of wet mass).
The purified enzyme from Lactobacillus minor is stable in a pH range from about 5.5 to 8.5. The enzyme is stable to about 40° C. and the pH optimum of the enzymic reaction is in the range from pH 7 to pH 7.5. The temperature optimum of the enzymic reaction is about 55° C. The enzyme has a broad spectrum of substrates.
The enzyme can be purified to a specific activity of from 35 to 40 U/mg of protein by means of hydrophobic interaction chromatography.
The invention also relates to a method for obtaining alcohol dehydrogenase from Lactobacillus minor. For this purpose, the DNA coding for Lactobacillus minor alcohol dehydrogenase is expressed in a suitable prokaryotic or eukaryotic microorganism. Lactobacillus minor alcohol dehydrogenase is preferably transformed into and expressed in an Escherichia coli strain, in particular in Escherichia coli RB 791.
Lactobacillus minor alcohol dehydrogenase can be obtained, for example, in such a way that the recombinant Escherichia coli cells are cultured, expression of said alcohol dehydrogenase is induced and then, after about 10 to 18 hours (h), the cells are disrupted by ultrasound treatment or by means of a French press (Gaullin, Siemens). The cell extract obtained may either be used directly or be purified further. For this purpose, the cell extract is centrifuged, for example, and the supernatant obtained is subjected to a hydrophobic interaction chromatography. Said chromatography is preferably carried out at pH 7.0 in an aqueous buffer which also contains magnesium ions.
The invention further relates to a method for obtaining an enantioselective (S)-hydroxy compound of the formula II

R1—C(OH)—R2  (II)

where R1 and R2 are, independently of one another, identical or different and are

    
    
        1. hydrogen,
        2. —(C1-C20)-alkyl in which alkyl is straight-chained or branched,
        3. —(C2-C20)-alkenyl in which alkenyl is straight-chained or branched and, optionally, comprises one, two, three or four double bonds,
        4. —(C2-C20)-alkynyl in which alkynyl is straight-chained or branched and, optionally, comprises one, two, three or four triple bonds,
        5. —(C6-C14)-aryl,
        6. —(C1-C8)-alkyl-(C6-C14)-aryl or
        7. R1 and R2 form in combination with the —C(O) radical a —(C6-C14)-aryl or a —(C6-C14)-heterocycle,
        
            where the radicals defined above under 1. to 7. are unsubstituted or, independently of one another, mono- to trisubstituted by
            a) —OH,
            b) halogen such as fluorine, chlorine, bromine or iodine,
            c) —NO2,
            d) —C(O)—O— (C1-C20)-alkyl in which alkyl is linear or branched and unsubstituted or mono- to tri-substituted by halogen, hydroxyl, amino or nitro, or
            e) —(C6-C14)-heterocycle which is unsubstituted or mono- to tri-substituted by halogen, hydroxyl, amino or nitro,

characterized in that

        
        
    
    
    a) a racemic mixture comprising the compound of the formula II, the alcohol dehydrogenase of the invention, water, cofactor and an organic solvent an organic solvent having a logP of from 0.5 to 4.0, for example from the series diethyl ether, tert-butyl methyl ether, diisopropyl ether or ethyl acetate, is incubated
    b) in a two-phase system and
    c) the enantiomerically pure (S)-hydroxy compound formed is isolated.


The reaction conditions are essentially the same as in the abovementioned method for the enantiospecific reduction of the keto compound of the formula I. However, instead of enantioselectively reducing the keto compound of the formula I, the method comprises oxidizing the corresponding (R)-hydroxy compound of the formula II to the corresponding keto compound. Furthermore, the method uses acetone rather than isopropanol for regenerating NADP. For example, the alcohol dehydrogenase of the invention converts acetone and NADPH to NADP and isopropanol. The amount of acetone used is from 5% to 30%, based on the volume of the total mixture. Preferred amounts of acetone are from 10% to 20%, in particular 10%.
The alcohol dehydrogenase of the invention may be present for preparation of the compound of the formula II in either completely or partially purified form or may also be used in said method when inside cells. Said cells may be present here in a native, permeabilized or lysed form.
The invention also relates to a recombinant Escherichia coli clone, RB 791, which expresses Lactobacillus minor alcohol dehydrogenase and which was deposited under the conditions of the Budapest. Treaty with the Deutsche Sammlung für Mikroorganismen und Zellkulturen, Mascheroder Weg 1b, 38124 Brunswick on Mar. 26, 2001 under the number DSM 14196.
The invention is illustrated by the following examples:
EXAMPLE 1
Screening for R-Alcohol Dehydrogenases in Strains of the Genus Lactobacillus by Means of Whole Cell Biotransformation
Various Lactobacillus strains were cultured for screening in the following medium (numbers in each case in g/l): glucose (20), yeast extract (5), meat extract (10), diammonium hydrogen citrate (2), sodium acetate (5), magnesium sulfate (0.2), manganese sulfate (0.05), dipotassium hydrogen phosphate (2).
The medium was sterilized at 121° C. and the strains of the genus Lactobacillus (abbreviated to L. hereinbelow) were cultured without further pH regulation or addition of oxygen. The cells were subsequently removed by centrifugation, and in each case 4 g of cells were resuspended for whole cell biotransformation in a final volume of 10 ml of potassium phosphate buffer (KPi buffer) (50 mM, pH=7.0). After addition of in each case 0.1 g of glucose, the cells were shaken at 30° C. for 15 min. Ethyl 4-chloro-3-oxo-butanoate was added at a final concentration of 40 mM to the cell suspension, and the medium was analyzed by gas chromatography in each case after 10 min and 120 min. For this purpose, the cells were removed by centrifugation, the supernatant was filtered and diluted in chloroform to a final concentration of 10-15 μg/ml of ethyl 4-chloro-3-oxobutanoate.
The various Lactobacillus strains were used to convert ethyl 4-chloro-3-oxobutanoate, used as substrate, with the following enantiomeric purity to ethyl (S)-4-chloro-3-hydroxybutyrate.
The enantiomeric excess is calculated as follows:

ee(%)=((R-alcohol−S-alcohol)/(R-alcohol+S-alcohol))×100.











TABLE 1








ee of ethyl 4-chloro-3-



Lactobacillus strain
(S)-hydroxybutanoate in %



















L. reuteri
34.6



L. kandleri
90



L. collinoides
71.3



L. bifermentans
53.6



L. oris
63.4



L. brevis
74



L. halotolerans
67.2



L. minor
18.6



L. parabuchneri
78.5



L. kefir
87.8



L. fructosus
28.9










EXAMPLE 2
Obtaining Recombinant R-Specific Alcohol Dehydrogenases
A.) Preparation of Genomic DNA from Strains of the Genus Lactobacillus 
The cell pellet of approximately 2 ml of culture liquid of the genus Lactobacillus was resuspended in 300 μl of TE buffer (containing 10 mM Tris/HCl, pH=8.1 mM EDTA), admixed with 20 mg/ml lysozyme and incubated at 37° C. for 10 min. This was followed by adding 100 μl of sodium dodecylsulfate (SDS) (10%), 100 μl of sodium perchlorate (5M) and 500 μl of chloroform/isoamyl alcohol (24:1). After shaking vigorously, the protein was removed by centrifugation and the aqueous phase transferred to a new Eppendorf vessel and this was followed by adding 800 μl of ethanol (EtOH) (96%). The Eppendorf vessel was inverted several times and the precipitated chromosomal DNA then transferred to a new Eppendorf vessel and washed with 200 μl of EtOH. The DNA was again transferred to a new Eppendorf vessel, dried under reduced pressure and dissolved in 100 μl of TE buffer.
B.) Oligonucleotides as 5′ and 3′ Primers for PCR (Polymerase Chain Reaction)
The primers used for the PCR were derived from the known N-terminal and C-terminal sequence of L. kefir alcohol dehydrogenase, with known preferences for particular codons in lactobacilli being taken into account. Thus, the codon ATG (Met) as start codon was put in front of each 5′ primer, and furthermore the cleavage site for the restriction enzyme Bam HI (GGATCC) was located upstream of said start codon on the 5′ primer, in order to enable subsequent cloning into the expression sector. The stop codon (TAG) and the cleavage site for Hind III (AAGCTT) were placed downstream of the 3′ primer. The primer constructs are listed below:










N = A, T, C or G; Y = T or C; R = A or G




5′ primer








(SEQ ID NO: 1)











5′GCGGATCCATGACNGAYCGNTTRAARGGNAARGTNGC3′




 



3′ primer








(SEQ ID NO: 2)











5′GGGAAGCTTCTAYTGNGCNGTRTANCCNCCRTCNAC3′







The primers were prepared according to known methods.
C.) PCR (Polymerase Chain Reaction) with Genomic DNA from Strains of the genus Lactobacillus 
PCR mixture (100 μl):














Amount used per reaction
Concentration



















dNTP's
8
μl
per NTP














2.5
nmol/μl










Oligos
per oligo 10 μl: 20 μl
2
pmol/μl











Chromosomal DNA
3
μl
ca. 1
μg/μl










10 × buffer
10
μl



(Promega)











Taq polymerase
1
μl
2
U/μl


(Promega)










H2O
58
μl





dNTPs are a mixture of deoxynucleotide triphosphates such as dATP, dGTP, dCTP, dTTP






Cycle:

    
    
        95° C. for 2 min, followed by
        maintaining 80° C.
        
            hot start, followed by
        
        
        95° C. for 30 sec, followed by
        40° C. for 1 min 30×

followed by in each case 30 times 95° C. for 30 s and 40° C. for 1 min, then

        72° C. for 2.5 min,

followed by

        72° C. for 2.5 min

followed by

        maintaining 10° C.
    
    


For analysis, 10 μl of the mixture were applied to a 1% strength agarose gel and electrophoretically fractionated at a constant 100 V. The PCRA revealed distinct amplification of a DNA piece of approximately 750 bp.
D.) Isolation of PCR Fragments from the Gel
In order to obtain the PCR fragment, the entire PCR mixture was applied to a 1% strength agarose gel and electrophoretically fractionated at a constant 100 V. For this purpose, the gel was divided into two lanes, one containing the complete PCR mixture and the other one containing only a sample of 5 μl, so that the PCR fragment was excised from the gel by staining with ethidium bromide only the lane with the sample for orientation purposes, in order to rule out damage due to ethidium bromide and UV light of the PCR fragment to be isolated.
Isolation from the gel was carried out using the QIAquick Gel Extraction Kit from Qiagen, Hilden, Germany.
A total concentration of 20 ng/μl DNA was determined.
E.) Ligation
To prepare the ligation, the purified PCR fragment and the cloning vector used, pQE30 or pQE70, both from Quiagen, were cleaved with Bam HI and Hind III (4 μl of DNA=200 ng of DNA, 1 μl of 10× buffer, 1 μl of enzyme, BSA and H2O (Biolabs, New England)).
The cleaved plasmid was then purified again by means of the QIAquick Gel Extraction Kit, taken up in water, dephosphorylated by means of alkaline phosphatase (USB, Amersham Life Science).
For purification, the appropriate reaction mixtures were again applied to a 1% strength agarose gel, and thus the digested amplicon and the plasmid were isolated from the gel, as described under D.). The concentration of plasmid and amplicon after purification was approximately 20 ng/μl.
For ligation, 3 μl of pQE30 or pQE70 (60 ng), 2.5 μl of amplicon (50 ng), 2 μl of ligase buffer (Boehringer; Mannheim), 1.5 μl of H2O and 1 μl of T4 ligase (Boehringer; Mannheim) were used. The mixture was incubated at 16° C. overnight.
Subsequently, 40 μl of electrocompetent Escherichia coli RB791 cells were transformed with 1.5 μl of ligation mixture by electroporation. The cells were introduced to 500 μl of SOC medium, incubated at 37° C. for 45 min and then in each case 250 μl were plated out on LBamp agar plates. The SOC medium contains per liter of water 20 g of tryptone, 5 g of yeast extract, 0.5 g of NaCl, 10 ml of 1 M MgSO4 and 10 ml of 1 M MgCl2. LBamp agar plates contain per liter of water 10 g of tryptone, 5 g of yeast extract, 10 g of NaCl, 20 g of agar, pH 7.0, and 50 mg of ampicillin.
Grown colonies were removed and cultured in 4 ml of liquid culture (LBamp medium) at 37° C. overnight. In each case 2 ml of this cell suspension were used for plasmid preparation (according to the Quiagen miniprep protocol (Quiagen, Hilden, Germany)).
The plasmid was prepared starting with a Bam HI and Hind III restriction digest. The complete digest was applied to a 1% strength agarose gel and electrophoretically fractionated at 100 V (detection of the 750 kp insert), followed by using the plasmids for sequencing optionally.
Clones having the 750 kp insert were then plated out on LBamp agar plates.
F.) Sequencing of Plasmids
Sequencing was carried out by means of SequiThermEXCEL II Long-Read DNA Sequencing Kit (Biozym, Oldendorf, Germany) on an Li-Cor sequencer (MWG Biotech, Ebersberg, Germany), according to the manufacturer's instructions. The primers used were the standard sequencing primers for pQE vectors.
G.) Screening of Clones with Respect to Soluble R-ADH Expression
Clones having inserts of 750 kp were studied with regard to enzymic activity and stereoselectivity. For this purpose, the clones were removed from the LBamp agar plates and cultured in 20 ml of liquid cultures (LBamp medium) at 25° C. and then, at a cell density (OD500) of 0.5, induced with 1 mM isopropyl-β-D-thiogalactopyranoside (IPTG). After 18 h, the cells were removed by centrifugation and in each case 40 mg of cells were taken up in 350 μl of Kpi buffer (50 mM, pH=7, 1 mM MgCl2). The enzyme was liberated from the cells by wet grinding with the aid of glass beads (0.5 g, 0.3 mm). In addition, the cells were disrupted by means of a Retsch mill at 4° C. for 20 minutes.
The enzyme assay contained 870 μl of triethanolamine buffer (100 mM, pH=7.0, 1 mM MgCl2), 100 μl of a 100 mM solution of ethyl 4-chloro-acetoacetate, 10 μl of NADPH (final concentration 0.19 mM), and 20 μl of enzyme solution.
Enzyme unit definition: 1 U corresponds to the amount of enzyme required for converting 1 μmol of substrate (ethyl 4-chloro-3-oxobutanoate) per 1 min.
Stereoselectivity was detected by incubating 480 μl of triethanolamine buffer (100 mM, pH=7.0, 1 mM MgCl2) with 1.0 mM ethyl 4-chloro-3-oxobutanoate, 1.9 mM NADPH (in each case final concentration) and 20 μl of enzyme solution. After incubating for 15 min, the reaction mixture was filtered and diluted 1:10 in chloroform, and a sample was analyzed by means of GC-MS.
Conditions of gas chromatography (GC):
Chiral column: Lipodex E, ID 0.25 mm, 1=25 m (Macherey-Nagel)


    1. 2 min 60° C.
    2. in 28 min from 60° C. to 130° C. with a rate of 2.5° C. per minute
    3. 15 min at 130° C.


An (R)-specific alcohol dehydrogenase was able to be cloned and actively overexpressed from the following Lactobacillus strains:

















Activity





Clone
in U/g of


Strain
Plasmid
number
cells*
ee in %



















L. parabuchneri
pQE30
12
450
>99.9


L. parabuchneri
pQE30
14
170
>99.9


L. kandleri
pQE30
11
280
>99.9


L. kandleri
pQE70
17
710
>99.9


L. minor
pQE30
2
2 830  
>99.9


L. minor
pQE70
3
680
>99.9


L. minor
pQE70
4
700
>99.9





*Activity calculated from G.) (wet grinding); the activities are considerably higher after fermentation and disruption by French press.






H.) Enzyme Obtainment and Purification

The enzyme was obtained by culturing the strain with the highest enzymic activity in a fermenter (fed batch, 10 l) and inducing it at 40 OD500 with 1 mM IPTG. After 18 h, the cells were harvested, taking up 300 g of cells in 3 l of Kpi buffer (50 mM, pH=7, 1 mM MgCl2) and disrupted subsequently by means of a French press (Gaullin, Siemens). The supernatant obtained after centrifugation is referred to as crude extract hereinbelow and had a volume activity of approximately 2000 U/ml (20 000 U/g of wet mass).
To characterize the enzyme, a portion of the enzyme obtained was purified by means of hydrophobic interaction chromatography on Q-Sepharose ff (fast flow). For this purpose, the column used was equilibrated with 50 mM Kpi buffer pH=7.0, 1 mM MgCl2. After application of the crude extract to the column and brief washing with equilibration buffer, the enzyme was eluted with an increasing linear salt gradient (0-1M NaCl, 1 ml/min) at a salt concentration of about 0.3 M NaCl. Combining the enzyme-containing fractions resulted in approximately 25 ml of purified enzyme with a volume activity of about 800 U/ml and a protein content of from 20 to 22 mg/ml. The enzyme purified in this way thus has a specific activity of approximately 35 to 40 U/mg of protein.
All enzymic activities were determined at 25° C. The enzyme activity was calculated as follows:

    Calculation: 1 unit=conversion of 1 μmol of substrate per min
    
        Lambert-Beer law
    
    
    NADPH decrease was monitored at 340 nm (see enzymic assay mixture)=ΔE/min
    
        N=enzyme dilution factor
        V=enzyme volume in ml (0.01)
        Vcuvette=cuvette volume=1 ml
        d=cuvette light path=1 cm
        eNADPH NADPH extinction coefficient=6.22 [mM−1*cm−1]
        Activity=(ΔE/min*N*Vcuvette)/(eNADPH*V*d)
    
    


Protein determination was carried out according to Bradford (Bio-Rad Laboratories GmbH, Protein Assay).
EXAMPLE 3
Enzyme-Catalyzed Preparation of ethyl (S)-4-chloro-3-hydroxybutyrate
A.) On a 5-Liter Scale
The alcohol dehydrogenase crude extract obtained in Example 2 and the coenzyme NADP were employed in the enzyme-catalyzed synthesis of ethyl (S)-4-chloro-3-hydroxybutyrate from ethyl 4-chloro-3-oxobutanoate. The oxidized coenzyme was continuously regenerated due to the concomitant presence of isopropanol so that the reaction requires only catalytic amounts of coenzyme.
The mixture contained:

    
    
        2 l of triethanolamine buffer 100 mM pH=7.0, 1 mM
        MgCl2, 10% glycerol,
        400 mg of NADP,
        600 ml of isopropanol,
        800 ml of ethyl acetate,
        600 ml of ethyl 4-chloro-3-oxobutanoate and
        approximately 100 000 units of alcohol dehydrogenase.
    
    


After 3 days of stirring at room temperature, complete conversion of ethyl 4-chloro-3-oxo-butanoate to ethyl (S)-4-chloro-3-hydroxybutyrate with enantiomeric purity of more than 99.9% was detected by gas chromatography.
After removing the aqueous phase, evaporating the solvent and, optionally, distillation, purified ethyl (S)-4-chloro-3-hydroxybutyrate is obtained with an enantiomeric purity of more than 99.9%.
B.) On a 50 l Scale
The reaction mixture for converting 10 l of ethyl 4-chloro-3-oxo-butanoate is composed as follows:

    
    
        18 l of triethanolamine buffer 100 mM pH=7.0, 1 mM MgCl2, 10% glycerol,
        4 g of NADP,
        10 l of isopropanol,
        10 l of ethyl acetate,
        10 l of ethyl 4-chloro-3-oxo-butanoate and
        approximately 2 million units of alcohol dehydrogenase (1.25 l of crude extract).
    
    


After 7 days of stirring at room temperature, complete conversion of ethyl 4-chloro-3-oxo-butanoate to ethyl (S)-4-chloro-3-hydroxybutyrate with enantiomeric purity of more than 99.9% was detected by gas chromatography.
EXAMPLE 4
Biochemical Characterization of Cloned Alcohol Dehydrogenase from Lactobacillus Minor
A.) pH Stability
The activity of the enzyme as a function of storage in buffers with different pH values in the range from pH 4 to 11 was studied. For this purpose, various buffers (50 mM) in the range from pH 4 to 11 were prepared and the enzyme purified in Example 2 was diluted 1:100 therein and incubated for 30 min. All buffers contained 1 mM MgCl2. 10 μl of this were then used in the normal enzyme assay (triethanolamine buffer 100 mM pH=7.0, 1 mM MgCl2, 10 mM ethyl 4-chloro-3-oxo-butanoate and 0.19 mM NADPH). The reaction was monitored at 30° C. and 340 nm for 1 min.
The starting value here is the measured value obtained immediately after diluting the enzyme in triethanolamine buffer 50 mM pH=7.0. Under predefined conditions, this value corresponded to a change in extinction of 0.20/min and was set as 100% value, with all subsequent measured values being related to this value.











TABLE 2







Activity

Activity




in %

in %


pH
Buffer system
(n = 2)
Buffer system
(n = 2)



















4
sodium acetate/
87.5 ± 6.5





acetic acid


4.5
sodium acetate/
94.5 ± 3.0



acetic acid


5
sodium acetate/
94.5 ± 1.5
MES/NaOH
55 ± 5



acetic acid


5.5
KH2PO4/K2PO4
96 ± 3
MES/NaOH
77.1 ± 2.1


6
KH2PO4/K2PO4
100 ± 0 
triethanol-
100 ± 0 





amine/NaOH


6.5
KH2PO4/K2PO4
97.5 ± 2.5
triethanol-
100 ± 0 





amine/NaOH


7
KH2PO4/K2PO4
100 ± 0 
triethanol-
97.9 ± 2.1





amine/NaOH


7.5
KH2PO4/K2PO4
97.5 ± 7.5
tris/HCl
94.6 ± 1.3


8
KH2PO4/K2PO4
93.0 ± 3.0
tris/HCl
89.2 ± 0  


8.5
KH2PO4/K2PO4
102.5 ± 2.5 
tris/HCl
  60 ± 4.2


9
glycine/NaOH
76.5 ± 1.5
tris/HCl
63.1 ± 4.8


9.5
glycine/NaOH
52.5 ± 7.5


10
glycine/NaOH
52.5 ± 7.5


11
glycine/NaOH
0.0 ± 0 









Table 2 indicates that the enzyme has good pH stability, in particular in the acidic range, the enzyme stability appearing to be a function not only of the pH but also of the buffer system used. When using, for example, TRIS and MES buffers, the enzyme is found to be inactivated more strongly than in the KPi buffer with the same pH.
There was no significant inactivation in the KPi buffer in the pH range from 5.5 to 8.5.
B.) Temperature Stability
The temperature stability for the range from 25° C. to 50° C. was determined similarly to the manner described in A.). For this purpose, in each case a 1:100 dilution of the purified enzyme was incubated at the particular temperature for 30 min and then measured at 30° C. using the above assay procedure. Here too, the starting value used was the measured value obtained immediately after diluting the enzyme in triethanolamine buffer 50 mM pH=7.0. This value was also set here as 100% value. L. minor alcohol dehydrogenase is stable up to a temperature of 40° C. Thereafter, the activity rapidly declines.










TABLE 3







Temperature
Activity in % (n = 4)









25
 101 ± 3.2



30
81.2 ± 5.8



35
67.0 ± 1.6



37
20.2 ± 2.4



40
33.4 ± 3.8



42
 0 ± 0



45
 0 ± 0



50
 0 ± 0










C.) pH Optimum

The pH optimum was determined by determining the enzymic reaction in the relevant buffer listed in Table 3. As in the standard assay, the concentration of ethyl 4-chloro-3-oxo-butanoate and of NADPH was 10 mM and 0.19 mM, respectively. The reaction was determined at 30° C. The enzyme of the invention was found to have a pH optimum between 7 and 7.5.









TABLE 4







Activity in U/ml




of undiluted


pH
Buffer system
enzyme

















4
sodium acetate/acetic acid
85


4.5
sodium acetate/acetic acid
132


5
MES/NaOH
218


5.5
MES/NaOH
240


6
triethanolamine/NaOH
381


6.5
triethanolamine/NaOH
349


7
triethanolamine/NaOH
510


7.5
tris/HCl
707


8
tris/HCl
585


8.5
tris/HCl
486


9
tris/HCl
488


10
glycine/NaOH
131


11
glycine/NaOH
0









D.) Temperature Optimum

The optimal assay temperature was determined by measuring the enzyme activity from 25° C. to 60° C. The assay mixture corresponded to the standard concentration of ethyl 4-chloro-3-oxo-butanoate and NADPH. As Table 5 demonstrates, the optimal assay temperature of the enzyme is 55° C., with the activity declining rapidly thereafter.










TABLE 5







Temperature
Activity in U/ml of undiluted enzyme



















25
540



30
1235



35
1968



40
1621



45
2469



50
2469



55
2855



60
0










E.) Spectrum of Substrates

Furthermore, substrates other than ethyl 4-chloro-3-oxo-butanoate were also used in the enzymic assay mixture. For this purpose, the following assay mixture was used:

    970 μl of triethanolamine buffer (100 mM, pH=7.0, 1 mM MgCl2 containing 10 mM keto compound)
    20 μl of NADPH (0.19 mM in assay mixture)
    10 μl of enzyme (1:100)


The activity determined with ethyl 4-chloro-3-oxo-butanoate was set to 100% and the enzyme activities of the other substrates were related to this value.










TABLE 6







Substrate
Activity in % (n = 2)









Ethyl 4-chloro-3-oxo-butanoate
100



Ethyl pyruvate
192.3 ± 11.5



2-Octanone
90.8 ± 1.2



Methyl acetoacetate
 120 ± 7.7



Ethyl 2-oxo-4-phenylbutyrate
62.7 ± 4.8










F.) Enzyme Stability in Organic Solvents

The stability of the enzyme when contacted with organic solvents was studied by diluting L. minor alcohol dehydrogenase 1:100 in the solvent mixtures listed, followed by incubation at room temperature (for organic solvents not miscible with water, the dilution refers to the aqueous phase). Continuous mixing of both phases was ensured (shaker, 200 rpm). 10 μl of the enzyme solution were then used in the standard assay mixture. Here too, the starting value was set to 100% after dilution in the buffer (triethanolamine buffer 100 mM, pH=7.0, 1 mM MgCl2), with all other values being related to this value.







TABLE 7







A.) Water-miscible solvents:












Solvent
logP
t = 2 h
t = 8 h
t = 24 h
t = 48 h















Buffer

86
70
3
0


10% isopropanol
0.28
32
34
16
0


20% isopropanol
0.28
16
17
7
0


10% DMSO
−1.3
73
54
60
40


20% DMSO
−1.3
73
54
57
40


1M sorbitol

93
74
60
6


10% glycerol
−3
120
64
62
28


20% glycerol
−3
120
100
100
104









As Table 7A demonstrates, glycerol, DMSO and sorbitol have an activating and, respectively, stabilizing action on the alcohol dehydrogenase used. In contrast, the isopropanol to be used in the process has an inactivating action.










B.) Solvents not miscible with water












Solvent
logP
t = 2 h
t = 8 h
t = 24 h
t = 48 h















Buffer

86
70
3
0


20% ethyl acetate
0.68
87
50
10
8


20% diethyl ether
0.85
53
42
37
23


20% tert-butyl methyl
1.21
67
51
38
24


ether


20 diisopropyl ether
1.55
100
57
41
29


20% dibutyl ether
2.9
92
71
23
6


20% pentane
3
74
55
7
6


20% hexane
3.5
80
39
2
5


20% heptane
4
51
49
7
6


20% octane
4.5
87
47
2
1









As Table 7B demonstrates, the alcohol dehydrogenase studied exhibits considerable stability in a large number of organic solvents. Surprisingly, solvents having logP values between 0 and 3 inhibit the alcohol dehydrogenase studied no more than those having logP values between 3 and 4.5, in particular with regard to longer incubation times (24 h and 48 h) solvents having logP values between 0 and 3 stabilize the ADH studied, compared to the corresponding values in the buffer. The aliphatic solvents studied, pentane, hexane, heptane and octane, do not exhibit this stabilizing action with long-term incubation.
The logP value of a component X is the logarithm of the distribution coefficient of X in the octanol/water two-phase system (50/50)

    P=concentration of X in octanol phase/concentration of X in aqueous phase

G. Enzyme Stability Under Process Conditions



The stability of the enzyme under process conditions was studied by diluting L. minor alcohol dehydrogenase 1:100 with the solvent mixtures used in the two-phase system, followed by incubation at room temperature. 10 μl of the enzyme solution were then used in the standard assay mixture.
Table 8 depicts the enzyme activities as a % of the starting value.













TABLE 8







6 h
20 h
46 h
60 h
84 h























Triethanolamine
100
75
0
0
0



buffer, 100 mM,



1 mM MgCl2



Mixture B
100
85
80
60
55



Mixture C
110
95
95
85
80



Mixture D
100
65
55
50
50







Mixture B: buffer, 10% glycerol, 10% isopropanol



Mixture C: buffer, 20% glycerol, 20% isopropanol



Mixture D: buffer, 10% glycerol, 10% isopropanol + 20% ethyl acetate






It was found that recombinant L. minor alcohol dehydrogenase is stable and active in the combination of solvents used in the two-phase system for several days.

## Claims

1. A method for the enantioselective reduction of a keto compound of the formula I


R1—C(O)—R2  (I)

where R1 and R2 are, independently of one another, identical or different and are
(i) a hydrogen atom;
(ii) —(C1-C20)-alkyl in which alkyl is straight-chained or branched;
(iii) —(C2-C20)-alkenyl in which alkenyl is straight-chained or branched and, optionally, comprises one, two, three or four double bonds;
(iv) —(C2-C20)-alkynyl in which alkynyl is straight-chained or branched and, optionally, comprises one, two, three or four triple bonds;
(v) —(C6-C14)-aryl;
(vi) —(C1-C8)-alkyl-(C6-C14)-aryl or
(vii) R1 and R2 form in combination with the —C(O) radical a —(C6-C14)-aryl or a —(C5-C14)-heterocycle,
where the radicals defined above under (i) to (vii) are unsubstituted or, independently of one another, mono- to trisubstituted by
—OH;
halogen;
—NO2;
—C(O)—O—(C1-C20)-alkyl in which alkyl is linear or branched and unsubstituted or mono- to trisubstituted by halogen, hydroxyl, amino or nitro, or
—(C5-C14)-heterocycle which is unsubstituted or mono- to trisubstituted by halogen, hydroxyl, amino or nitro,

said method comprising
(a) admixing a reaction batch comprising a compound of the formula (I) in a proportion of from 10% to 25%, based on the total volume of the reaction batch, with alcohol dehydrogenase, water, cofactor NADPH or NADH and an organic solvent having a logP of from 0.6 to 3.0;
(b) incubating a two-phase system of water, organic solvent and the compound of formula (I) to produce a chiral hydroxyl compound and oxidized cofactor;
(c) continuously regenerating cofactor from oxidized cofactor produced by said alcohol dehydrogenase, and
(d) isolating the chiral hydroxy compound.

2. The method as claimed in claim 1, wherein the compound of the formula (I) is selected from 4-chloro-3-oxobutanoic acid ethyl ester, acetophenone, methyl acetoacetate, ethyl 2-oxo-4-phenylbutyrate, 2,5-hexanedione, ethyl pyruvate or 2-octanone.

3. The method as claimed in claim 1, wherein the organic solvent has a logP of from 0.63 to 1.75.

4. The method as claimed in claim 1, wherein the organic solvent is diethyl ether, tert-butyl methyl ether, diisopropyl ether or ethyl acetate.

5. The method as claimed in claim 1, wherein the alcohol dehydrogenase is derived from yeast, horse liver, Thermoanaerobium brockii, Rhodococcus erythropolis, Latobacillus kefir, Lactobacillus brevis, Lactobacillus minor or is an alcohol dehydrogenase having the amino acid sequence according to SEQ ID NO. 4.

6. The method as claimed in claim 5, wherein the alcohol dehydrogenase is present in an amount of from 20 000 U to 200 000 U per kg of compound of the formula (I) to be reacted.

7. The method as claimed in claim 1, wherein said method further comprises adding a buffer having a pH of from 5 to 10.

8. The method as claimed in claim 7, wherein the buffer is selected from potassium phosphate, Tris/HCl or triethanolamine buffer.

9. The method as claimed in claim 1, wherein said method further comprises adding magnesium ions at a concentration of from 0.2 mM to 10 mM to the buffer.

10. The method as claimed in claim 1, wherein the cofactor is NADPH or NADH, present in an amount of from 0.05 mM to 0.25 mM, based on the aqueous phase.

11. The method as claimed in claim 1, wherein said method further comprises adding glycerol, sorbitol or dimethyl sulfoxide as a stabilizer for the alcohol dehydrogenase.

12. The method as claimed in claim 11, wherein the stabilizer is present in an amount of from 5% to 30%, based on the volume of the total reaction batch.

13. The method as claimed in claim 12, wherein the stabilizer is present in an amount of from 10% to 20%, based on the volume of the total reaction batch.

14. The method as claimed in claim 1, wherein said continuously regenerating step comprises adding isopropanol.

15. The method as claimed in claim 14, wherein the isopropanol is present in an amount of from 5% to 30%, based on the volume of the total reaction batch.

16. The method as claimed in claim 15, wherein isopropanol is present in an amount of from 10% to 20%, based on the volume of the total reaction batch.

17. The method as claimed in claim 1, wherein the compounds of the formula (I) are present in an amount of from 15% to 22% based on the total volume.

18. The method as claimed in claim 1, wherein the reaction batch is at a temperature of from about 10° C. to 70° C.

19. The method as claimed in claim 1, wherein the organic solvent is present in an amount of from 1% to 90%, based on the total volume of the reaction batch.

20. The method as claimed in claim 19, wherein the organic solvent is present in an amount of from 15% to 60%, based on the total volume of the reaction batch.

21. The method as claimed in claim 1, wherein the ratio of organic solvent to water is from 9 to 1 to 1 to 9.

22. A method as claimed in claim 1, wherein the halogen is fluorine, chlorine, bromine or iodine.