# Patent

## Title
Fused morpholinopyrimidines and methods of use thereof

## Abstract

The present disclosure relates to Fused Morpholinopyrimidines, pharmaceutical compositions comprising an effective amount of a Fused Morpholinopyrimidine and methods for using a Fused Morpholinopyrimidine in the treatment of a neurodegenerative disease, comprising administering to a subject in need thereof an effective amount of a Fused Morpholinopyrimidine.

## Background
1. RELATED APPLICATIONS
This application is a continuation of International Application No. PCT/US2015/011631, filed Jan. 15, 2015, which claims priority under 35 U.S.C. §119(e) to U.S. Provisional Application Ser. No. 62/022,328, filed Jul. 9, 2014 and to U.S. Provisional Application Ser. No. 61/927,909, filed Jan. 15, 2014, the entire disclosures of which are incorporated by reference herein in their entirety.


2. FIELD
This disclosure relates generally to fused morpholinopyrimidine compounds. More specifically, the disclosure relates to the use of the fused morpholinopyrimidine compounds for the treatment of neurological disease.
3. BACKGROUND
Alzheimer's disease (AD) is the most prevalent form of dementia. It is a neurodegenerative disease that is associated (though not exclusively) with aging. The disease is clinically characterized by a progressive loss of memory, cognition, reasoning and judgment that leads to an extreme mental deterioration and ultimately death. The disease is pathologically characterized by the deposition of extracellular plaques and the presence of neurofibrillary tangles. The plaques are considered to play an important role in the pathogenesis of the disease. They mainly consist of fibrillar aggregates of β-amyloid peptide (Aβ), which are products of the amyloid precursor protein (APP). APP is initially processed by β-secretase forming a secreted peptide and a membrane bound C99 fragment. The C99 fragment is subsequently processed by the proteolytic activity of γ-secretase. Multiple sites of proteolysis on the C99 fragment lead to the production of a range of smaller peptides (Aβ37-42 amino acids). N-terminal truncations can also be found e.g., Aβ (4-42). For convenience, notations Aβ40 and Aβ42, as used herein, include these N-terminal truncated peptides. Upon secretion, the Aβ peptides initially form soluble aggregates which ultimately lead to the formation of insoluble deposits and plaques. Aβ42 is believed to be the most neurotoxic; the shorter peptides have less propensity to aggregate and form plaques. AP plaques in the brain are also associated with cerebral amyloid angiopathy, hereditary cerebral hemorrhage with amyloidosis, multi infarct dementia, dementia pugilistisca and Down's Syndrome.
γ-secretase is an association of four proteins: Aph1, nicastrin, presenilin and Pen-2 (review De Strooper, Neuron 38:9-12 (2003)). Subjects carrying particular mutations in one of these components, presenilin, show increased Aβ42/Aβ40 ratio. These mutations are correlated with early onset familial AD Inhibition of γ-secretase resulting in the lowering of Aβ42 has been investigated by the pharmaceutical community, and numerous inhibitors have been found. See, e.g., Thompson et al. (Bioorg. Med. Chem. Lett. 2006, 16, 2357-63), Shaw et al. (Bioorg. Med. Chem. Lett. 2006, 17, 511-16) and Asberom et al. (Bioorg. Med. Chem. Lett. 2007, 15, 2219-2223) Inhibition of γ-secretase, though, is not without side-effects, some of which are due to the γ-secretase complex processing substrates other than C99, e.g., Notch. A more desirable approach is to modulate the proteolytic activity of the γ-secretase complex in a manner that lowers Aβ42 in favor of shorter peptides without significantly affecting the activity of γ-secretase on substrates such as Notch.
Compounds that have shown modulation of γ-secretase include certain non-steroidal, anti-inflammatory drugs (NSAIDs), for example Flurbiprofen, (Stock et al., Bioorg. Med. Chem. Lett. 2006, 16, 2219-2223). Other publications that disclose agents said to reduce Aβ42 through the modulation of γ-secretase include: WO 2004/074232, WO 2005/054193, Perreto et al., Journal of Medicinal Chemistry 2005, 48:5705-20, WO 2005/108362, WO 2006/008558, WO 2006/021441, WO 2006/041874, WO 2006/045554, WO 2004/110350, WO 2006/043964, WO 2005/115990, EP 1847524, WO 2007/116228, WO 2007/110667, WO 2007/124394, EP 184752, EP 1849762, WO 2007/125364, WO 2009/086277.
4. SUMMARY
It is understood that any of the embodiments described below can be combined in any desired way, and that any embodiment or combination of embodiments can be applied to each of the aspects described below, unless the context indicates otherwise.
A compound of Formula (I), Formula (II) or a pharmaceutically acceptable salt thereof (also referred to herein as a “Fused Morpholinopyrimidine”) is useful for treating, preventing or ameliorating symptoms of a neurodegenerative disease.
In one aspect, the invention provides a compound of Formula (I)




or a pharmaceutically acceptable salt thereof, wherein:

R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene 3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2 and -phenoxy, provided that phenyl is not substituted with one or more oxo; Y is phenyl or pyridinyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4 alkoxy, —NH—C1-C4 alkyl, —OH and —NH2; and Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle.

In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene 3- to 7-membered monocyclic heterocycle or —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2; Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4 alkoxy, —NH—C1-C4 alkyl, —OH and —NH2; and Z is pyridinyl or imidazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle.
In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, nitrogen containing 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene nitrogen-containing 3- to 7-membered monocyclic heterocycle or —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2.
In some embodiments, R is phenyl, tetrahydropyranyl, —C1-C4 alkyl, —C1-C4 alkylene-phenyl or oxetanyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and halo-substituted C1-C4 alkoxy.
In some embodiments, Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy.
In some embodiments, Z is pyridinyl or imidazolyl, each of which is unsubstituted or substituted with one or more —C1-C4 alkyl or halo.
In some embodiments, R is phenyl, tetrahydropyranyl, —C1-C4 alkyl, —C1-C4 alkylene-phenyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and halo-substituted C1-C4 alkoxy; Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is pyridinyl or imidazolyl, each of which is substituted with one —C1-C4 alkyl or halo.
In some embodiments, R is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkyl; Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is imidazolyl substituted with methyl or halo.
In some embodiments, R is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkyl; Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is pyridinyl substituted with methyl or chloro.
In some embodiments, R is phenyl which is unsubstituted.
In some embodiments, R is phenyl substituted with two to three —F.
In some embodiments, R is phenyl substituted with one methyl.
In some embodiments, R is tetrahydropyranyl which is unsubstituted; Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is imidazolyl substituted with —C1-C4 alkyl.
In some embodiments, R is phenyl substituted with one —C1-C4 alkyl.
In some embodiments, each —C1-C4 alkyl is methyl.
In some embodiments, each —C1-C4 alkoxy is methoxy.
In some embodiments, Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy.
In some embodiments, Y is phenyl which is unsubstituted.
In some embodiments, Y is phenyl substituted with one —F.
In some embodiments, Y is phenyl substituted with one methoxy.
In some embodiments, Z is pyridinyl, which is unsubstituted or substituted with one to three —C1-C4 alkyl.
In some embodiments, Z is pyridinyl substituted with one to three methyl.
In some embodiments, Z is pyridinyl substituted with one methyl.
In some embodiments, Z is imidazolyl, which is unsubstituted or substituted with one to three —C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one to three methyl.
In some embodiments, Z is imidazolyl substituted with one methyl.
In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene-3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2 and -phenoxy, provided that phenyl is not substituted with one or more oxo.
In some embodiments, R is phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl or 3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy and -phenoxy, provided that phenyl is not substituted with one or more oxo.
In some embodiments, R is phenyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and -phenoxy.
In some embodiments, R is phenyl substituted with one to three substituents independently selected from the group consisting of -halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and —C1-C4 alkoxy.
In some embodiments, R is —C1-C6 alkyl, monocyclic cycloalkyl, alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and -phenoxy.
In some embodiments, Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4 alkoxy, —NH—C1-C4 alkyl, —OH and —NH2.
In some embodiments, Y is phenyl or pyridinyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, halo-substituted C1-C4 alkyl and —CN.
In some embodiments, Y is phenyl or pyridinyl, each of which is substituted with one substituent independently selected from the group consisting of -halo, —C1-C4 alkoxy and —CN.
In some embodiments, Y is phenyl which is substituted with -halo, —C1-C4 alkoxy or —CN.
In some embodiments, Y is pyridinyl which is substituted with -halo or —C1-C4 alkoxy.
In some embodiments, Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle.
In some embodiments, Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is nitrogen-containing 3- to 7-membered monocyclic heterocycle which is substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl, pyrimidinyl, pyrazolyl, triazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl or triazolyl, each of which is substituted with one substituent independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl or triazolyl, each of which is substituted with one substituent independently selected from the group consisting of -halo, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one substituent independently selected from the group consisting of -halo, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is triazolyl substituted with one —C1-C4 alkyl.
In one aspect, the compound of Formula (I) is selected from the group consisting of: (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (R)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (−)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine; 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine; (+)-7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7; 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine; 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine; (+)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine; (−)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine; (+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile; (−)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile; (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile; (+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-1-(5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile; (+)-7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile; (S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; and (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; or a pharmaceutically acceptable salt thereof.
In some embodiments, the compound of Formula (I) is selected from the group consisting of: (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine; 7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7; 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine; (+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine; (+)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile; (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (−)-2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile; (S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; (S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; and (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; or a pharmaceutically acceptable salt thereof.
In one aspect, the invention provides a pharmaceutical composition comprising a pharmaceutically acceptable carrier or vehicle and an effective amount of a compound of Formula (I) or a pharmaceutically acceptable salt thereof.
In one aspect, the invention provides a method for treating a neurodegenerative disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (I).
In some embodiments, the neurodegenerative disease is panic disorder, obsessive compulsive disorder, delusional disorder, drug-induced psychosis, post-traumatic stress disorder, age-related cognitive decline, attention deficit/hyperactivity disorder, personality disorder of the paranoid type, personality disorder of the schizoid type, dyskinesia, choreiform condition, psychosis associated with Parkinson's disease, psychotic symptoms associated with Alzheimer's disease, mood disorder, or dementia.
In one aspect, the invention provides a method for treating Alzheimer's disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (I).
In one aspect, the invention provides a method for improving an impaired cognitive function, comprising administering to a subject having impaired cognitive function an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (I).
In one aspect, the invention provides a method for ameliorating a symptom of Alzheimer's disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (I).
In some embodiments, Alzheimer's disease is early onset Alzheimer's disease.
In some embodiments, the subject is a human.
In one embodiment, the symptom is progressive loss of memory, progressive loss of cognition, progressive loss of reasoning and/or progressive loss of judgment.
A compound of Formula (I) or a pharmaceutically acceptable salt thereof (also referred to herein as a “Fused Morpholinopyrimidine”) is useful for treating, preventing or ameliorating one or more symptoms of a neurodegenerative disease.
Exemplary neurodegenerative diseases include, but are not limited to Alzheimer's disease, early onset Alzheimer's disease, panic disorder, obsessive compulsive disorder, delusional disorder, drug-induced psychosis, post-traumatic stress disorder, age-related cognitive decline, attention deficit/hyperactivity disorder, personality disorder of the paranoid type, personality disorder of the schizoid type, dyskinesia, choreiform condition, psychosis associated with Parkinson's disease, psychotic symptoms associated with Alzheimer's disease, mood disorder, dementia, cognitive impairment, myclonus, seizures, Parkinsonism, extrapyramidal signs (EPS), apraxia, dystonia, dementia with Lewy bodies (DLB), aphasia, visual agnosia, and ataxia.
In some embodiments, the cognitive function impaired is one or more of attention, learning, delayed memory, working memory, visual learning, speed of processing, vigilance, verbal learning, visual motor function, social cognition, long term memory or executive function.
In some embodiments, the subject is 65 years old or older. In other embodiments, the subject is 55 years old or older. In still other embodiments, the subject is 55 years old or younger, or 50 years old or younger.
A pharmaceutical composition comprising an effective amount of a Fused Morpholinopyrimidine of Formula (I) and a pharmaceutically acceptable carrier or vehicle is useful for treating or preventing a neurodegenerative disease.
In another aspect, the invention provides a compound of Formula (II)




or a pharmaceutically acceptable salt thereof, wherein:

R1 is —C1-C4 alkyl which is unsubstituted or substituted with one or more -halo; each R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo; Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl and halo-substituted C1-C4 alkyl; and Z is imidazolyl or pyrazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.

In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo, and the other R2 is hydrogen or —C1-C4 alkyl.
In some embodiments, both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo.
In some embodiments, R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo.
In some embodiments, Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl or pyrazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.
In some embodiments, R1 is methyl; R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and oxo; Y is phenyl or pyridinyl, each of which is substituted with one or more substituent independently selected from the group consisting of -halo and —C1-C4 alkoxy; and Z is imidazolyl or pyrazolyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.
In some embodiments, R1 is methyl; R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more -halo; Y is phenyl or pyridinyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkoxy; and Z is imidazolyl or pyrazolyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two -halo.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two —F.
In some embodiments, each R2 is independently —C1-C6 alkyl.
In some embodiments, each R2 is independently methyl.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two -halo.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two —F.
In some embodiments, both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle.
In some embodiments, both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, each of which is unsubstituted or substituted with two —F.
In some embodiments, Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkoxy.
In some embodiments, Y is phenyl substituted with one -halo.
In some embodiments, Y is phenyl substituted with one —F.
In some embodiments, Y is phenyl substituted with one —C1-C4 alkoxy.
In some embodiments, Y is phenyl substituted with one methoxy.
In some embodiments, Y is pyridinyl substituted with one —C1-C4 alkoxy.
In some embodiments, Y is pyridinyl substituted with one methoxy.
In some embodiments, Z is imidazolyl, which is unsubstituted or substituted with one -halo or —C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one -halo.
In some embodiments, Z is imidazolyl substituted with one —Cl.
In some embodiments, Z is imidazolyl substituted with one —C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one methyl.
In one aspect, the compound of Formula (II) is selected from the group consisting of:

    N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; 3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; 3, 3-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (S)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (S)-8, 8-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (R)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; (+)-7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; and (+)-7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; or a pharmaceutically acceptable salt thereof.


In some embodiments, the compound of Formula (II) is selected from the group consisting of: N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; and 3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; or a pharmaceutically acceptable salt thereof.
In one aspect, the invention provides a pharmaceutical composition comprising a pharmaceutically acceptable carrier or vehicle and an effective amount of a compound of Formula (II) or a pharmaceutically acceptable salt thereof.
In one aspect, the invention provides a method for treating a neurodegenerative disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (II).
In one aspect, the invention provides a method for treating Alzheimer's disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (II).
In one aspect, the invention provides a method for improving an impaired cognitive function, comprising administering to a subject having impaired cognitive function an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (II). In one embodiment, the subject has impaired cognitive function relative to a healthy subject, for example a healthy subject of the same age.
In one aspect, the invention provides a method for ameliorating a symptom of Alzheimer's disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of Formula (II).
In some embodiments, the symptom of Alzheimer's disease is progressive loss of memory, progressive loss of cognition, progressive loss of reasoning and/or progressive loss of judgment.
In some embodiments, Alzheimer's disease is early onset Alzheimer's disease. In some embodiments, the subject is a human.
Exemplary neurodegenerative disease include Alzheimer's disease, early onset Alzheimer's disease, panic disorder, obsessive compulsive disorder, delusional disorder, drug-induced psychosis, post-traumatic stress disorder, age-related cognitive decline, attention deficit/hyperactivity disorder, personality disorder of the paranoid type, personality disorder of the schizoid type, dyskinesia, choreiform condition, psychosis associated with Parkinson's disease, psychotic symptoms associated with Alzheimer's disease, mood disorder, dementia, cognitive impairment, myclonus, seizures, Parkinsonism, extrapyramidal signs (EPS), apraxia, dystonia, dementia with Lewy bodies (DLB), aphasia, visual agnosia, and ataxia.
In some embodiments, the cognitive function impaired is one or more of attention, learning, delayed memory, working memory, visual learning, speed of processing, vigilance, verbal learning, visual motor function, social cognition, long term memory or executive function.
In some embodiments, the subject is 65 years old or older. In other embodiments, the subject is 55 years old or older. In still other embodiments, the subject is 55 years old or younger, or 50 years old or younger.
A pharmaceutical composition comprising an effective amount of a Fused Morpholinopyrimidine of Formula (II) and a pharmaceutically acceptable carrier or vehicle is useful for treating or preventing a neurodegenerative disease.
The details of the invention are set forth in the accompanying description below.
All patents and publications cited in this specification are hereby incorporated by reference in their entirety.


5. DETAILED DESCRIPTION
5.1 Definitions and Abbreviations
The following are definitions of terms used in the present specification. The initial definition provided for a group or term herein applies to that group or term throughout the present specification individually or as part of another group, unless otherwise indicated. Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art.
The term “—C1-C4 alkyl” as used herein, refers to a straight chain or branched non-cyclic hydrocarbon having from 1 to 4 carbon atoms, wherein one of the hydrocarbon's hydrogen atoms has been replaced by a single bond. Representative straight chain —C1-C4 alkyls include -methyl, -ethyl, -n-propyl and -n-butyl. Representative branched —C1-C4 alkyls include -isopropyl, -sec-butyl, -isobutyl and -tert-butyl.
The term “—C1-C6 alkyl” as used herein, refers to a straight chain or branched non-cyclic hydrocarbon having from 1 to 6 carbon atoms, wherein one of the hydrocarbon's hydrogen atoms has been replaced by a single bond. Representative straight chain —C1-C6 alkyls include -methyl, -ethyl, -n-propyl, -n-butyl, -n-pentyl and -n-hexyl. Representative branched —C1-C6 alkyls include -isopropyl, -sec-butyl, -isobutyl, -tert-butyl, -isopentyl, -neopentyl, -1-methylbutyl, -isohexyl, -neohexyl, -2-methylbutyl, -3-methylbutyl, -1,1-dimethylpropyl and -1,2-dimethylpropyl.
The term “—C3-C8 monocyclic cycloalkyl” as used herein, refers to a saturated cyclic hydrocarbon having from 3 to 8 carbon atoms. Representative —C3-C8 monocyclic cycloalkyls include -cyclopropyl, -cyclobutyl, -cyclopentyl, -cyclohexyl, -cycloheptyl and -cyclooctyl.
The term “C1-C4 alkylene” as used herein, refers to a straight or branched chain saturated hydrocarbon containing 1-4 carbon atoms, wherein two of the hydrocarbon's hydrogen atoms have been replaced by a single a bond. Representative C1-C4 alkylene groups include, methylene, ethylene, n-propylene, isopropylene, n-butylene and isobutylene.
The term “C1-C4 alkoxy” as used herein, refers to a C1-C4 alkyl-O— group wherein the C1-C4 alkyl is as defined above. Examples of C1-C4 alkoxy include, but are not limited to, methoxy, trifluoromethoxy, ethoxy, propoxy or butoxy.
The term “halo-substituted C1-C4 alkoxy” as used herein, refers to a C1-C4 alkoxy group, as defined above, wherein one or more of the C1-C4 alkoxy group's hydrogen atoms have been replaced with —F, —Cl, —Br or —I. Examples of a halo-substituted C1-C4 alkoxy include, but are not limited to, —O—CH2F, —O—CCl3, —O—CF3, —O—CH2Cl, —O—CH2CH2Br, —O—CH2CH2I, —O—CF2CF3, —O—CH2CH2CH2F, —O—CH2CH2CH2Cl, —O—CH2CH2CH2CH2Br, —O—CH2CH2CH2CH2I, —O—CH2CH(Br)CH3, —O—CH2CH(Cl)CH2CH3, —O—CH(F)CH2CH3, —OCH2CF3 and —O—C(CH3)2(CH2Cl).
The term “amino-substituted C1-C4 alkoxy” as used herein, refers to a C1-C4 alkoxy group, as defined above, wherein one or more of the C1-C4 alkoxy group's hydrogen atoms have been replaced with —NH2. Examples of amino-substituted C1-C4 alkoxy include, but are not limited to, —O—CH2NH2, —O—CH2CH2NH2, —O—CH(NH2)CH3, —O—CH2CH2CH2NH2, —O—CH2CH2CH2CH2NH2, —O—CH2CH(NH2)CH3, —O—CH(NH2)CH2CH3 and —O—C(CH3)2(CH2NH2).
The term “nitrogen containing 3- to 7-membered monocyclic heterocycle” as used herein, refers to a monocyclic 3- to 7-membered aromatic or non-aromatic monocyclic cycloalkyl group in which one of the cycloalkyl group's ring carbon atoms has been replaced with a nitrogen atom and 0-4 of the cycloalkyl group's remaining ring carbon atoms are independently replaced with a N, O or S atom. The nitrogen-containing 3- to 7-membered monocyclic heterocycles can be attached via a nitrogen or carbon atom. Representative examples of nitrogen-containing 3- to 7-membered monocyclic heterocycles include, but are not limited to, piperidinyl, piperazinyl, pyrrolyl, piperidonyl, oxazinyl, thiazinyl, diazinyl, triazinyl, tetrazinyl, imidazolyl, tetrazolyl, pyrrolidinyl, isoxazolyl, pyridinyl, oxazolyl, thiazolyl, pyrazolyl, triazolyl, pyrimidinyl, morpholinyl, furuzanyl, pyrrolinyl, imidazolinyl, imidazolidinyl, pyrazolinyl, isothiazolyl, oxadiazolyl, thiadiazolyl, pyridazinyl, pyrazinyl, azetidine, aziridine, pyrazolidinyl and thiomorpholinyl. In one embodiment, the nitrogen-containing 3- to 7-membered monocyclic heterocycle is fully saturated or partially saturated.
A “nitrogen-containing 4- to 6-membered nonaromatic heterocycle” refers to a monocyclic 4- to 6-membered nonaromatic monocyclic cycloalkyl group in which one of the cycloalkyl group's ring carbon atoms has been replaced with a nitrogen atom and 0-3 of the cycloalkyl group's remaining ring carbon atoms are independently replaced with a N, O or S atom. The nitrogen-containing 4- to 6-membered nonaromatic heterocycles can be attached via a nitrogen or carbon atom. Representative examples of nitrogen-containing 4- to 6-membered nonaromatic heterocycles include, but are not limited to, azetidinyl, piperidinyl, piperazinyl, pyrrolinyl, oxazinyl, morpholinyl, imidazolidinyl, pyrazolidinyl and thiomorpholinyl.
An “oxygen-containing 3- to 6-membered nonaromatic heterocycle” refers to a monocyclic 3- to 6-membered nonaromatic monocyclic cycloalkyl group in which one of the cycloalkyl group's ring carbon atoms has been replaced with a oxygen atom and 0-3 of the cycloalkyl group's remaining ring carbon atoms are independently replaced with a N, O or S atom. Representative examples of oxygen-containing 3- to 6-membered nonaromatic heterocycles include, but are not limited to, oxiranyl, oxetanyl, furanyl, tetrahydrofuranyl, dihydrofuranyl, pyranyl, dihydropyranyl, tetrahydropyranyl, dioxanyl, dioxolanyl, trioxanyl and trioxolanyl.
The term “oxo” refers to ═O group.
The term “3- to 7-membered monocyclic heterocycle” as used herein, refers to a monocyclic 3- to 7-membered aromatic or non-aromatic monocyclic cycloalkyl in which 1-4 of the ring carbon atoms have been independently replaced with a N, O or S atom. The 3- to 7-membered monocyclic heterocycles can be attached via a nitrogen or carbon atom. Representative examples of a 3- to 7-membered monocyclic heterocycle group include, but are not limited to, nitrogen-containing 3- to 7-membered monocyclic heterocycles discussed above, tetrahydrofuranyl, dihydrofuranyl, pyranyl, dihydropyranyl, tetrahydropyranyl, thiopyranyl, dihydrothiopyranyl, tetrahydrothiopyranyl, dioxanyl, dithianyl, trithianyl, dioxolanyl, furanyl and thiophenyl. In one embodiment, the 3- to 7-membered monocyclic heterocycle is a nitrogen-containing 3- to 7-membered monocyclic heterocycle. In another embodiment, the 3- to 7-membered monocyclic heterocycle is fully saturated or partially saturated.
The terms “halogen” or “halo” as used herein, refer to chlorine, bromine, fluorine or iodine.
The term “halo-substituted C1-C4 alkyl” as used herein, refers to a C1-C4 alkyl group, as defined above, wherein one or more of the C1-C4 alkyl group's hydrogen atoms have been replaced with —F, —Cl, —Br or —I. Examples of a halo-substituted C1-C4 alkyl include, but are not limited

    to, —CH2F, —CCl3, —CF3, —CH2Cl, —CH2CH2Br, —CH2CH2I, —CF2CF3, —CH2CH2CH2F, —CH2CH2CH2Cl, —CH2CH2CH2CH2Br, —CH2CH2CH2CH2I, —CH2CH(Br)CH3, —CH2CH(Cl)CH2CH3, —CH(F)CH2CH3, —CH2CF3 and —C(CH3)2(CH2Cl).


The term “amino-substituted C1-C4 alkyl” as used herein, refers to a C1-C4 alkyl group, as defined above, wherein one or more of the C1-C4 alkyl group's hydrogen atoms have been replaced with —NH2. Examples of amino-substituted C1-C4 alkyl include, but are not limited

    to, —CH2NH2, —CH2CH2NH2, —CH(NH2)CH3, —CH2CH2CH2NH2, —CH2CH(NH2)CH3, —CH2CH(NH2)CH2CH3, —CH(NH2)CH2CH3 and —C(CH3)2(CH2NH2).


The term “halo-substituted phenyl” as used herein, refers to a phenyl group, wherein one or more of the phenyl group's hydrogen atoms have been replaced with —F, —Cl, —Br or —I. The one or more —F, —Cl, —Br or —I can be in ortho, mew and/or para position. Representative examples of halo-substituted phenyl include, but are not limited to, —C6H4F, —C6H3ClF, —C6H3Cl2, —C6H2F3, —C6HCl4, —C6H2FClI and —C6F5.
The term “C1-C4 alkylene-phenyl” as used herein, refers to a C1-C4 alkyl group, as defined above, wherein one of the C1-C4 alkyl group's hydrogen atoms has been replaced with phenyl.
The term “hydroxy-substituted C1-C4 alkyl” as used herein, refers to a C1-C4 alkyl group, as defined above, wherein one or more of the C1-C4 alkyl group's hydrogen atoms have been replaced with —OH. Representative examples of a hydroxy-substituted C1-C4 alkyl include, but are not limited to, —CH2OH, —CH2CH2OH, —CH2CH2CH2OH, —CH2CH2CH2CH2OH, —CH2CH(OH)CH3, —CH2CH(OH)CH2CH3, —CH(OH)CH2CH3 and —C(CH3)2(CH2OH).
Unless otherwise indicated, any heteroatom with unsatisfied valences is assumed to have hydrogen atoms sufficient to satisfy the valences.
The phrase “pharmaceutically acceptable carrier or vehicle” as used herein, refers to a pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting the Fused Morpholinopyrimidine from one organ, or portion of the body, to another organ, or portion of the body. Each carrier or vehicle must be “acceptable” in the sense of being compatible with the other ingredients of the formulation and not injurious to the subject. Some examples of materials which can serve as pharmaceutically acceptable carriers or vehicles include: sugars, such as lactose, glucose and sucrose; starches, such as corn starch and potato starch; cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc; excipients, such as cocoa butter and suppository waxes; oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; glycols, such as butylene glycol; polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; esters, such as ethyl oleate and ethyl laurate; agar; buffering agents, such as magnesium hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution; ethyl alcohol; phosphate buffer solutions; and other non-toxic compatible substances employed in pharmaceutical formulations.
The compounds described herein may form salts which are also within the scope of this invention. Reference to a compound described herein is understood to include reference to salts thereof, unless otherwise indicated. The term “salt(s)”, as employed herein, denotes acidic and/or basic salts formed with inorganic and/or organic acids and bases. In addition, when a compound described herein contains both a basic moiety, such as, but not limited to, amine, pyridine or imidazole and an acidic moiety, such as, but not limited to, a carboxylic acid, zwitterions (“inner salts”) may be formed and are included within the term “salt(s)” as used herein. Pharmaceutically acceptable (i.e., non-toxic, physiologically acceptable) salts are preferred, although other salts are also useful, e.g., in isolation or purification steps which may be employed during preparation. Salts of the compounds described herein may be formed, for example, by reacting a compound with an amount of acid or base, such as an equivalent amount, in a medium, such as one in which the salt precipitates or in an aqueous medium followed by lyophilization.
The compounds described herein which contain a basic moiety, such as, but not limited to, an amine or a pyridine or imidazole ring, may form salts with a variety of organic and inorganic acids. Exemplary acid addition salts include acetates (such as those formed with acetic acid or trihaloacetic acid, for example, trifluoroacetic acid), adipates, alginates, ascorbates, aspartates, benzoates, benzenesulfonates, bisulfates, borates, butyrates, citrates, camphorates, camphorsulfonates, cyclopentanepropionates, digluconates, dodecylsulfates, ethanesulfonates, fumarates, glucoheptanoates, glycerophosphates, hemisulfates, heptanoates, hexanoates, hydrochlorides, hydrobromides, hydroiodides, hydroxyethanesulfonates (e.g., 2-hydroxyethanesulfonates), lactates, maleates, methanesulfonates, naphthalenesulfonates (e.g., 2-naphthalenesulfonates), nicotinates, nitrates, oxalates, pectinates, persulfates, phenylpropionates (e.g., 3-phenylpropionates), phosphates, picrates, pivalates, propionates, salicylates, succinates, sulfates (such as those formed with sulfuric acid), sulfonates, tartrates, thiocyanates, toluenesulfonates, such as tosylates, undecanoates and the like.
The compounds described herein which contain an acidic moiety, such as, but not limited to, a carboxylic acid, may form salts with a variety of organic and inorganic bases. Exemplary basic salts include ammonium salts, alkali metal salts, such as sodium, lithium and potassium salts, alkaline earth metal salts, such as calcium and magnesium salts, salts with organic bases (for example, organic amines), such as benzathines, dicyclohexylamines, hydrabamines (formed with N,N-bis(dehydroabietyl) ethylenediamine), N-methyl-D-glucamines, N-methyl-D-glycamides, t-butyl amines and salts with amino acids, such as arginine, lysine and the like. Basic nitrogen-containing groups may be quaternized with agents, such as lower alkyl halides (e.g., methyl, ethyl, propyl and butyl chlorides, bromides and iodides), dialkyl sulfates (e.g., dimethyl, diethyl, dibutyl and diamyl sulfates), long chain halides (e.g., decyl, lauryl, myristyl and stearyl chlorides, bromides and iodides), aralkyl halides (e.g., benzyl and phenethyl bromides), and others.
Prodrugs and solvates of the compounds described herein are also contemplated herein. The term “prodrug” as employed herein denotes a compound that, upon administration to a subject, undergoes chemical conversion by metabolic or chemical processes to yield a compound described herein, or a salt and/or solvate thereof. Solvates of the compounds described herein include, for example, hydrates.
Compounds described herein are, subsequent to their preparation, preferably isolated and purified to afford a composition containing an amount by weight equal to or greater than 90%, for example, equal to or greater than 95%, equal to or greater than 97%, equal to or greater than 98%, or equal to or greater than 99% of the compounds (“substantially pure” compounds), which is then used or formulated as described herein. Such “substantially pure” compounds described herein are also contemplated herein as part of the present invention.
All stereoisomers of the present compounds (for example, those which may exist due to asymmetric carbons on various substituents), including enantiomeric forms and diastereomeric forms, are contemplated within the scope of this invention. Individual stereoisomers of the compounds described herein may, for example, be substantially free of other isomers (e.g., as a pure or substantially pure optical isomer having a specified activity), or may be admixed, for example, as racemates or with all other, or other selected, stereoisomers. The chiral centers of the compounds described herein may have the S or R configuration as defined by the International Union of Pure and Applied Chemistry (IUPAC) 1974 Recommendations. The racemic forms can be resolved by physical methods, such as, for example, fractional crystallization, separation or crystallization of diastereomeric derivatives or separation by chiral column chromatography. The individual optical isomers can be obtained from the racemates by any suitable method, including without limitation, conventional methods, such as, for example, salt formation with an optically active acid followed by crystallization.
If, for instance, a particular enantiomer of a compound described herein is desired, it may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers. Alternatively, where the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic means well known in the art, and subsequent recovery of the pure enantiomers.
All configurational isomers of the compounds described herein are contemplated, either in admixture or in pure or substantially pure form. Certain compounds described herein may exist in particular geometric or stereoisomeric forms. The present invention contemplates all such compounds, including cis- and trans-isomers, cis (Z) and trans (E) alkene isomers R- and S-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention. Additional asymmetric carbon atoms may be present in a substituent, such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention.
Isomeric mixtures containing any of a variety of isomer ratios may be utilized in accordance with the present invention. For example, where only two isomers are combined, mixtures containing 50:50, 60:40, 70:30, 80:20, 90:10, 95:5, 96:4, 97:3, 98:2, 99:1, or 100:0 isomer ratios are all contemplated by the present invention. Those of ordinary skill in the art will readily appreciate that analogous ratios are contemplated for more complex isomer mixtures.
Throughout the specifications, groups and substituents thereof may be chosen to provide stable moieties and compounds. Compounds useful in the treatment, for example, are neurodegenerative disorders. The term “stable”, as used herein, refers to compounds which possess stability sufficient to allow manufacture and which maintain the integrity of the compound for a sufficient period of time to be detected and preferably for a sufficient period of time to be useful for the purposes detailed herein.
Definitions of specific functional groups and chemical terms are described in more detail above. For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75th Ed., inside cover, and specific functional groups are generally defined as described therein. Additionally, general principles of organic chemistry, as well as specific functional moieties and reactivity, are described in Organic Chemistry, Thomas Sorrell, University Science Books, Sausalito, 1999, the entire contents of which are incorporated herein by reference.
In some embodiments, the present invention also includes isotopically labeled compounds, which are identical to the compounds disclosed herein, but for the fact that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. Examples of isotopes that can be incorporated into compounds described herein include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, sulfur, fluorine and chlorine, such as 2H, 3H, 13C, 11C, 14C, 15N, 18O, 17O, 31P, 32P, 35S, 18F and 36Cl, respectively. Compounds described herein, or an enantiomer, diastereomer, tautomer, or pharmaceutically acceptable salt or solvate thereof, which contain the aforementioned isotopes and/or other isotopes of other atoms, are within the scope of this invention. Certain isotopically labeled compounds described herein, for example those into which radioactive isotopes, such as 3H and 14C are incorporated, are useful in drug and/or substrate tissue distribution assays. Tritiated, i.e., 3H, and carbon-14, i.e., 14C, isotopes are particularly preferred for their ease of preparation and detectability. Further, substitution with heavier isotopes, such as deuterium, i.e., 2H, can afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements, and hence, may be preferred in some circumstances. Isotopically labeled compounds can generally be prepared by carrying out the procedures disclosed in the Schemes and/or in the Examples below, by substituting a readily available isotopically labeled reagent for a non-isotopically labeled reagent.
When more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
As used herein, “effective amount” refers to any amount that is necessary or sufficient for achieving or promoting a desired outcome, e.g., for treating, preventing, or ameliorating a symptom of a neurodegenerative disease. In some instances an effective amount is a therapeutically effective amount. A therapeutically effective amount is any amount that is necessary or sufficient for promoting or achieving a desired biological response in a subject. The effective amount for any particular application can vary depending on such factors as the disease or condition being treated, the particular agent being administered, the size of the subject, or the severity of the disease or condition.
As used herein, “treat” or “treating” includes reducing or ameliorating a symptom of a neurodegenerative disease, for example, improving cognitive function.
As used herein, the term “subject” refers to a vertebrate animal. In one embodiment the subject is a mammal. In one embodiment the subject is a human. In other embodiments the subject is a non-human vertebrate animal, including, without limitation, non-human primates, laboratory animals, livestock, domesticated animals and non-domesticated animals. Non-limiting examples of subject include a mammal, e g, a human, mouse, rat, guinea pig, dog, cat, horse, cow, pig, and non-human primate, such as a monkey, chimpanzee, baboon or rhesus. In one embodiment, the subject is a human.
Practitioners of the art will recognize that certain chemical groups may exist in multiple tautomeric forms (for example, as an amide or imino ether). The scope of this disclosure is meant to include all such tautomeric forms. For example, a tetrazole may exist in two tautomeric forms, 1-H tetrazole and a 2-H tetrazole. This is depicted in the figure below. This example is not meant to be limiting in the scope of tautomeric forms.




Practitioners of the art will recognize that certain electrophilic ketones, may exist in a hydrated form. The scope of this disclosure is to include all such hydrated forms. For example, a trifluoromethyl ketone may exist in a hydrated form via addition of water to the carbonyl group. This is depicted in the figure below. This example is not meant to be limiting in the scope of hydrated forms.




ABBREVIATIONS
Abbreviations used in the following examples and preparations include:
















Aβ
Amyloid-beta



Ac
Acyl (Me-C(O)-)



AD
Alzheimer's Disease



APP
Amyloid Precursor Protein



Aq
Aqueous



BINAP
2,2′-Bis(diphenylphosphino)-1,1′-binaphthyl



Boc
Tert-butyloxycarbonyl



Bn
Benzyl



BSA
Bovine Serum Albumin



Bu
Butyl



c
Cyclo



cBu
Cylcobutyl



CBZ
Carboxybenzyl



Conc.
Concentrated



cPr
Cyclopropyl



CSF
Cerebrospinal Fluid



DAPT
N-[N-(3,5-Difluorophenacetyl-L-alanyl)]-(S)-




phenylglycine t-butyl ester



DAST
Diethylaminosulfur Trifluoride



dba
Dibenzylideneacetone



DBU
1,8-Diazabicyclo[5.4.0]undec-7-ene



DCC
Dicyclohexylcarbodiimide



DCE
1, 2-Dichloroethane



DEA
Di-ethylamine



DIAD
Diisopropyl Azodicarboxylate



DIPEA
N, N-Diisopropylethylamine



DME
1,2-Dimethoxyethane



DMF
Dimethylformamide



DMP
Dess-Martin Periodinane



DMSO
Dimethyl Sulfoxide



DPPA
Diphenylphosphorylazide



dppf
1,1′-Bis(diphenylphosphino)ferrocene



ELISA
Enzyme-Linked Immuno Sorbent Assay



Et
Ethyl



Et3N
Triethylamine



Eq.
Equivalent



g
grams(s)



HPLC
High Pressure Liquid Chromatography



h
Hour(s)



IPA
Isopropyl alcohol



i.v. or IV
Intravenous



LAH
Lithium Aluminum Hydride



LCMS
Liquid Chromatography-Mass Spectrometry



LG
Leaving Group



m
Multiplet



Me
Methyl



MeOH
Methyl Alcohol or Methanol



min
Minute(s)



mmol
Millimoles



μl
Microliter



ul
Microliter



Ms
Mesylate



MS
Mass Spectrometry



MW
Molecular Weight (all values are ±0.05)



n
Normal



N
Normal



NBS
N-Bromosuccinimide



NMP
1-Methylpyrrolidin-2-one



NMR
Nuclear Magnetic Resonance



NSAIDS
Non-Steroidal Anti-Inflammatory Drugs



o/n
Overnight



PMB
Para-methoxybenzyl



PBS
Phosphate Buffered Saline



Py
Pyridine



Ra-Ni
Raney Nickel



RT (or rt)
Room Temperature (about 20-25°C.)



s
Singlet



sat.
Saturated



t
Triplet



TBAF
Tetra-N-butylammonium Fluoride



TBS
Tert-butyldimethylsilyl



t-Bu
Tertiary Butyl



tert
Tertiary



Tf
Triflate



TFA
Trifluoroacetic Acid



THF
Tetrahydrofuran



TLC
Thin Layer Chromatography



TMS
Trimethylsilyl



TPP
Triphenylphosphine



Ts
Tosylate



v/v
Volume/volume



wt/v
Weight/volume










5.2 Fused Morpholinopyrimidines
Described below are Fused Morpholinopyrimidines, i.e., compounds according to Formula (I) and Formula (II) and pharmaceutically acceptable salts thereof, as well as methods for preparing the compounds and using the compounds to treat one or more neurodegenerative diseases, e.g., reducing a symptom of Alzheimer's disease (such as improving cognitive function). The compounds of the disclosure are believed to be gamma secretase modulators (GSMs), i.e., compounds that act to shift the relative levels of Aβ peptides produced by γ-secretase. In some embodiments, the compounds alter the relative levels of Aβ peptides produced by γ-secretase, for example the level of Aβ42 peptide, without significantly changing the total level of Aβ peptides produced.
In one aspect, described herein are compounds according to Formula (I), below:




and pharmaceutically-acceptable salts thereof, wherein R, Y and Z are as defined above for the compounds of Formula (I).

In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene 3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2 and -phenoxy, provided that phenyl is not substituted with one or more oxo; Y is phenyl or pyridinyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4 alkoxy, —NH—C1-C4 alkyl, —OH and —NH2; and Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle.
In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, nitrogen containing 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene-nitrogen-containing 3- to 7-membered monocyclic heterocycle or —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl and —C(O)NH2.
In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, nitrogen containing 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene nitrogen-containing 3- to 7-membered monocyclic heterocycle or —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2.
In some embodiments, R is phenyl, tetrahydropyranyl, —C1-C4 alkyl, —C1-C4 alkylene-phenyl or oxetanyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and halo-substituted C1-C4 alkoxy.
In some embodiments, Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy.
In some embodiments, Z is pyridinyl or imidazolyl, each of which is unsubstituted or substituted with one or more —C1-C4 alkyl or halo.
In some embodiments, R is phenyl, tetrahydropyranyl, —C1-C4 alkyl, —C1-C4 alkylene-phenyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and halo-substituted C1-C4 alkoxy; Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is pyridinyl or imidazolyl, each of which is substituted with one —C1-C4 alkyl or halo.
In some embodiments, R is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkyl; Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is imidazolyl substituted with methyl or halo.
In some embodiments, R is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkyl; Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is pyridinyl substituted with methyl or chloro.
In some embodiments, R is phenyl which is unsubstituted.
In some embodiments, R is phenyl substituted with two to three —F.
In some embodiments, R is phenyl substituted with one methyl.
In some embodiments, R is tetrahydropyranyl which is unsubstituted; Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and Z is imidazolyl substituted with —C1-C4 alkyl.
In some embodiments, R is phenyl substituted with one —C1-C4 alkyl.
In some embodiments, each —C1-C4 alkyl is methyl.
In some embodiments, each —C1-C4 alkoxy is methoxy.
In some embodiments, Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy.
In some embodiments, Y is phenyl which is unsubstituted.
In some embodiments, Y is phenyl substituted with one —F.
In some embodiments, Y is phenyl substituted with one methoxy.
In some embodiments, Z is pyridinyl, which is unsubstituted or substituted with one to three —C1-C4 alkyl.
In some embodiments, Z is pyridinyl substituted with one to three methyl.
In some embodiments, Z is pyridinyl substituted with one methyl.
In some embodiments, Z is imidazolyl, which is unsubstituted or substituted with one to three —C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one to three methyl.
In some embodiments, Z is imidazolyl substituted with one methyl.
In some embodiments, R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene-3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2—C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2—NH—C1-C4 alkyl, —S(O)2—N(C1-C4 alkyl)2, —NH—S(O)2—C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2—C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2 and -phenoxy, provided that phenyl is not substituted with one or more oxo.
In some embodiments, R is phenyl, oxetanyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl or 3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy and -phenoxy, provided that phenyl is not substituted with one or more oxo.
In some embodiments, R is phenyl, —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and -phenoxy.
In some embodiments, R is phenyl substituted with one to three substituents independently selected from the group consisting of -halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and —C1-C4 alkoxy.
In some embodiments, R is —C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and -phenoxy.
In some embodiments, Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4 alkoxy, —NH—C1-C4 alkyl, —OH and —NH2.
In some embodiments, Y is phenyl or pyridinyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, halo-substituted C1-C4 alkyl and —CN.
In some embodiments, Y is phenyl or pyridinyl, each of which is substituted with one substituent independently selected from the group consisting of -halo, —C1-C4 alkoxy and —CN.
In some embodiments, Y is phenyl which is substituted with -halo, —C1-C4 alkoxy or —CN.
In some embodiments, Y is pyridinyl which is substituted with -halo or —C1-C4 alkoxy.
In some embodiments, Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle.
In some embodiments, Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is nitrogen-containing 3- to 7-membered monocyclic heterocycle which is substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl, pyrimidinyl, pyrazolyl, triazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl or triazolyl, each of which is substituted with one substituent independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl or triazolyl, each of which is substituted with one substituent independently selected from the group consisting of -halo, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one substituent independently selected from the group consisting of -halo, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is triazolyl substituted with one —C1-C4 alkyl.
In some embodiments, the compound of Formula (I) is a compound selected from the compounds in Table I.







TABLE I







Exemplary Fused Morpholinopyrimidines of Formula (I)









Compound




of Example
Structure
Name





21A




(S)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2- amine


 


21B




(S)-N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido [5,4- b][1,4]oxazin-2-amine


 


22A




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7-phenyl- 7,8-dihydro-6H-pyrimido [5,4- b][1,4]oxazin-2- amine


 


22B




(R)-N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido [5,4- b][1,4]oxazin-2-amine


 


23




7-(3,5-difluorophenyl)-8- methyl-N-(4-(4-methyl-1H- imidazol-1-yl)phenyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


23A




(−)-7-(3, 5-difluorophenyl)-8- methyl-N-(4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


23B




(+)-7-(3, 5-difluorophenyl)-8- methyl-N-(4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 8- dihydro-6H-pyrimido[5, 4-b] [1, 4]oxazin-2-amine


 


24




8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- phenyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


24A




(+)-8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- phenyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


24B




(−)-8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- phenyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


25




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


25A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


25B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


26




8-methyl-N-(4-(4-methyl-1H- imidazol-1-yl)phenyl)-7- phenyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


26A




(+)-8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)phenyl)-7- phenyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


26B




(−)-8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)phenyl)-7- phenyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


27

N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


27A




(+)-N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


27B




(−)-N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


28




7-(3,5-difluorophenyl)-8- methyl-N-(4-(2-methylpyridin- 4-yl)phenyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


28A




(−)-7-(3,5-difluorophenyl)-8- methyl-N-(4-(2-methylpyridin- 4-yl)phenyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


28B




(+)-7-(3,5-difluorophenyl)-8- methyl-N-(4-(2-methylpyridin- 4-yl)phenyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


29




8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- (o-tolyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


29A




(−)-8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- (o-tolyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


29B




(+)-8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- (o-tolyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


30




7-(3,5-difluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


30A




(−)-7-(3,5-difluorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


30B




(+)-7-(3,5-difluorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


31




N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


31A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


31B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


32




N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


32A




(−)-N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


32B




(+)-N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


33




7-(3,5-difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazo1-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


33A




(+)-7-(3,5-difluorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


33B




(−)-7-(3,5-difluorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


34




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


34A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


34B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


35




N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


35A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


35B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(o-tolyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


36




N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


36A




(+)-N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4-b][1,4]oxazin-2- amine


 


36B




(−)-N-(3-fluoro-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


37




8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- (3,4,5-trifluorophenyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


37A




(+)-8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- (3,4,5-trifluorophenyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


37B




(−)-8-methyl-N-(4-(2- methylpyridin-4-yl)phenyl)-7- (3,4,5-trifluorophenyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


38




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


39




N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


39A




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


39B




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


40




N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


40A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


40B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl)phenyl)-8- methyl-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


41




7-(3,5-difluorophenyl)-N-(3- fluoro-4-(2-methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


41A




(+)-7-(3,5-difluorophenyl)-N- (3-fluoro-4-(2-methylpyridin- 4-yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine


 


41B




(−)-7-(3,5-difluorophenyl)-N- (3-fluoro-4-(2-methylpyridin- 4-yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido [5,4- b][1,4]oxazin-2-amine


 


42




7-(3,5-difluorophenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


42A




(+)-7-(3,5-difluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


42B




(−)-7-(3,5-difluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


43




8-methyl-N-(4-(4-methyl-1H- imidazol-1-yl)phenyl)-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine (racemic)


 


43A




(+)-8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)phenyl)-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


43B




(−)-8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)phenyl)-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4-b][1,4]oxazin-2- amine


 


44




8-methyl-N-(4-(4-methyl-1H- imidazol-1-yl)phenyl)-7-(3,4,5- trifluorophenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


45




N-(3-methoxy-4-(4-methyl-1H- imidazo1-1-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


46




N-(3-methoxy-4-(2- methylpyridin-4-yl)phenyl)-8- methyl-7-phenyl-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)


 


47




7-benzyl-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine (racemic)


 


47A




(+)-7-benzyl-N-(3-methoxy-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


47B




(−)-7-benzyl-N-(3-methoxy-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


48




7-(2, 4-difluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7,8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


48A




(−)-7-(2, 4-difluorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


48B




(+)-7-(2, 4-difluorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


49




7-(4-fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


49A




(−)-7-(4-fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


49B




(+)-7-(4-fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


50




N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7-fletrahydro-2H- pyran-4-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


51




7-(2-chlorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


51A




(−)-7-(2-chlorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


51B




(+)-7-(2-chlorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


52




N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 8- dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


53




7-(2-chloro-4-fluorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7,8-dihydro-6H- pyrimido [5, 4-b][1,4]oxazin- 2-amine (racemic)


 


54




7-(4-fluoro-2-methylphenyl)- N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


55




N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


55A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


55B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


56A




(+)-N-(3-fluoro-4-(2- methylpyridin-4-yl) phenyl)-7- (4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


56B




(−)-N-(3-fluoro-4-(2- methylpyridin-4-yl) phenyl)-7- (4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


57A




(+)-7-benzyl-N-(3-fluoro-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


57B




(−)-7-benzyl-N-(3-fluoro-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


58A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7- (4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


58B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7- (4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


59A




(+)-7-benzyl-N-(3-fluoro-4-(4- methyl-1H-imidazol-1 -yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


59B




(−)-7-benzyl-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


60A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


60B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


61A




(−)-7-(4-fluorophenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


61B




(+)-7-(4-fluorophenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


62A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


62B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


63A




(−)-7-(2, 4-difluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


63B




(+)-7-(2, 4-difluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


64A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


64B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


65




N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-1- methyl-2-(2, 2, 2- trifluoroethyl)-2, 3-dihydro- 1H-pyrido [3, 4-b][1, 4] oxazin-7-amine (racemic)


 


66A




(+)-7-(2, 4-difluorophenyl)-N- (3-fluoro-4-(2-methylpyridin- 4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


66B




(−)-7-(2, 4-difluorophenyl)-N- (3-fluoro-4-(2-methylpyridin- 4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


67A




(+)-7-(2-chlorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


67B




(−)-7-(2-chlorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


68A




(+)-7-benzyl-N-(3-methoxy-4- (2-methylpyridin-4-yl) phenyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


68B




(−)-7-benzyl-N-(3-methoxy-4- (2-methylpyridin-4-yl) phenyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


69A




(+)-7-(2, 4-difluorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


69B




(−)-7-(2, 4-difluorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


70A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


70B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


84A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


84B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


85A




(−)-2-(2-chlorophenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl) phenyl)-1-methyl-2, 3- dihydro-1H-pyrido [3, 4-b][1, 4]oxazin-7-amine


 


85B




(+)-2-(2-chlorophenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl) phenyl)-1-methyl-2, 3- dihydro-1H-pyrido [3, 4-b][1, 4]oxazin-7-amine


 


86




7-(2-chloro-4-methoxyphenyl)- N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


87




7-(2-chloro-5-methoxyphenyl)- N-(3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


88




7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine (racemic)


 


88A




(+)-7-(2-chloro-5- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


88B




(−)-7-(2-chloro-5- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


89




7-(2, 5-dichloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine (racemic)


 


90




7-(5-methoxy-2- methylphenyl)-N-(3-methoxy- 4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine (racemic)


 


91




7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine (racemic)


 


92




7-(4-methoxy-2- methylphenyl)-N-(3-methoxy- 4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine (racemic)


 


93A




(−)-7-(2-chloro-4- fluorophenyl)-N-(3-methoxy-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro- 6H-pyrimido [5, 4-b][1,4] oxazin-2-amine


 


93B




(+)-7-(2-chloro-4- fluorophenyl)-N-(3-methoxy-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro- 6H-pyrimido [5, 4-b][1,4] oxazin-2-amine


 


94A




(−)-7-(4-fluoro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


94B




(+)-7-(4-fluoro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


95A




(−)-7-(2, 4-dichlorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


95B




(+)-7-(2, 4-dichlorophenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


96A




(+)-7-(2, 4-dichlorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


96B




(−)-7-(2, 4-dichlorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine 


 


97A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


97B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


98A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


98B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


99A




(+)-7-(4-fluoro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


99B




(−)-7-(4-fluoro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


100A




(+)-7-(5-chloro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


100B




(−)-7-(5-chloro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


101A




(+)-7-(2-chloro-4- fluorophenyl)-N-(3-fluoro-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


101B




(−)-7-(2-chloro-4- fluorophenyl)-N-(3-fluoro-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


102A




(+)-7-(2-chloro-4- fluorophenyl)-N-(3-fluoro-4- (2-methylpyridin-4-yl) phenyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


102B




(−)-7-(2-chloro-4- fluorophenyl)-N-(3-fluoro-4- (2-methylpyridin-4-yl) phenyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


103A




(+)-7-(2-chloro-4, 5- difluorophenyl)-N-(3-fluoro-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


103B




(−)-7-(2-chloro-4, 5- difluorophenyl)-N-(3-fluoro-4- (4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


104A




(−)-7-(5-fluoro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


104B




(+)-7-(5-fluoro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


105A




(−)-7-(5-fluoro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


105B




(+)-7-(5-fluoro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


106A




(+)-7-(4-chloro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


106B




(−)-7-(4-chloro-2- (trifluoromethyl) phenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


107A




(−)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


107B




(+)-7-(4-chloro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(2-methylpyridin-4- yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


108A




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


108B




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


109A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(tetrahydro-2H- pyran-4-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


109B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(tetrahydro-2H- pyran-4-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


110A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


110B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2- amine


 


111




(S)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7- (methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


112A




(−)-7-(4-chloro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]oxazin- 2-amine


 


112B




(+)-7-(4-chloro-2- (trifluoromethyl) phenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


113




(S)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7- (methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


114A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(tetrahydro-2H- pyran-4-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


114B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(tetrahydro-2H- pyran-4-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


115A




(−)-8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7- (3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


115B




(+)-8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7- (3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


116A




(−)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


116B




(+)-N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin- 2-amine


 


117A




(−)-7-(4-fluoro-2- methylphenyl)-N-(3-methoxy- 4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


117B




(+)-7-(4-fluoro-2- methylphenyl)-N-(3-methoxy- 4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


118A




(+)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(3, 4, 5- trifluorophenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


118B




(−)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8- methyl-7-(3, 4, 5- trifluorophenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


164




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


165A




(+)-7-(5-chloro-2- (trifluoromethyl) phenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


165B




(−)-7-(5-chloro-2- (trifluoromethyl) phenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


166A




(+)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


166B




(−)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


167A




(+)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


167B




(−)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


168A




(−)-7-(2, 4-bis (trifluoromethyl) phenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


168B




(+)-7-(2, 4-bis (trifluoromethyl) phenyl)-N- (3-methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


169A




(+)-7-(2-chloro-4, 5- difluorophenyl)-N-(3-fluoro- 4-(4-methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


169B




(−)-7-(2-chloro-4, 5- difluorophenyl)-N-(3-fluoro- 4-(4-methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


170




(S)-(2-((3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol


 


171A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o- tolyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


171B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o- tolyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


172A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2- trifluoroethyl)-2, 3-dihydro- 1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine


 


172B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2- trifluoroethyl)-2, 3-dihydro- 1H-pyrido [3, 4-b][1, 4] oxazin-7-amine


 


173A




(+)-7-(2-chloro-5- (trifluoromethyl) phenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


173B




(−)-7-(2-chloro-5- (trifluoromethyl) phenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


174A




(−)-7-(2, 5-dichloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


174B




(+)-7-(2, 5-dichloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


175A




(+)-7-(5-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


175B




(−)-7-(5-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


176




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


177




(R)-(2-((3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-7-yl) methanol


 


178A




(+)-7-(4, 5-difluoro-2- (trifluoromethyl) phenyl)-N- (1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


178B




(−)-7-(4, 5-difluoro-2- (trifluoromethyl) phenyl)-N- (1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-amine


 


179A




(−)-7-(3, 5-difluorophenyl)- N-(6-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


179B




(+)-7-(3, 5-difluorophenyl)- N-(6-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


180A




(−)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o- tolyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


180B




(+)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o- tolyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


181A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


181B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


182A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


182B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


183A




(+)-7-(3, 5-difluorophenyl)- N-(6-methoxy-5-(2- methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b][1, 4] oxazin-2-amine


 


183B




(−)-7-(3, 5-difluorophenyl)- N-(6-methoxy-5-(2- methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b][1, 4] oxazin-2-amine


 


184A




(−)-7-(3, 5-difluorophenyl)- N-(6-methoxy-5-(1-methyl- 1H-pyrazol-4-yl) pyridin-2- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


184B




(+)-7-(3, 5-difluorophenyl)- N-(6-methoxy-5-(1-methyl- 1H-pyrazol-4-yl) pyridin-2- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


185A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine


 


185B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2 -amine


 


186A




(+)-7-(2, 4-difluorophenyl)- N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


186B




(−)-7-(2, 4-difluorophenyl)- N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


187A




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


187B




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


188A




(−)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


188B




(+)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


189A




(+)-7-(3, 5-difluorophenyl)- N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


189B




(−)-7-(3, 5-difluorophenyl)- N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


190




N-(6-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine (racemic)


 


191




N-(6-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-8-methyl-7-(2, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine (racemic)


 


192A




(−)-6-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H- imidazol-1-yl) picolinonitrile


 


192B




(+)-6-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H- imidazol-1-yl) picolinonitrile


 


193A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


193B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


194A




(+)-7, 8-dimethyl-N-(6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


194B




(−)-7, 8-dimethyl-N-(6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


195




N-(6-methoxy-5-(1-methyl- 1H-pyrazol-4-yl) pyridin-2- yl)-7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine (racemic)


 


196




N-(3-fluoro-6-methoxy-5-(1- methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine (racemic)


 


197




7-(3, 5-difluorophenyl)-N- (3-fluoro-6-methoxy-5-(1- methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine (racemic)


 


198A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8- trimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


198B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8- trimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


199A




(+)-7-(4-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


199B




(−)-7-(4-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


200




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (phenoxymethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


201




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (phenoxymethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


202A




(−)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7, 8- dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


202B




(+)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7, 8- dimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


203A




(+)-5-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H- imidazol-1-yl) benzonitrile


 


203B




(−)-5-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H- imidazol-1-yl) benzonitrile


 


204A




(−)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


204B




(+)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


205A




(+)-5-((7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H- imidazol-1-yl) benzonitrile


 


205B




(−)-5-((7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-yl) amino)-2-(4-methyl-1H- imidazol-1-yl) benzonitrile


 


206A




(+)-7-(3, 5-difluorophenyl)- N-(5-methoxy-6-(4- (trifluoromethyl)-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


206B




(−)-7-(3, 5-difluorophenyl)- N-(5-methoxy-6-(4- (trifluoromethyl)-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


207A




(+)-7-(5-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


207B




(−)-7-(5-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


208A




(+)-7-(2-chloro-5- methoxyphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


208B




(−)-7-(2-chloro-5- methoxyphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4]  oxazin-2-amine


 


209A




(+)-7-(2-chloro-4- methoxyphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


209B




(−)-7-(2-chloro-4- methoxyphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


210A




(+)-N-(5-chloro-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1, 4]oxazin-2-amine


 


210B




(−)-N-(5-chloro-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-7-(3, 5-difluorophenyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


211A




(+)-1-(5-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1, 4]oxazin-2-yl) amino)-3-methoxypyridin-2- yl)-1H-imidazole-4- carbonitrile


 


211B




(−)-1-(5-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1, 4]oxazin-2-yl) amino)-3-methoxypyridin-2- yl)-1H-imidazole-4- carbonitrile


 


212A




(−)-7-(3, 3- difluorocyclobutyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido[5, 4-b] [1, 4] oxazin-2-amine


 


212B




(+)-7-(3, 3- difluorocyclobutyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


213A




(−)-7, 8-dimethyl-N-(4-(4- methyl-1H-imidazol-1-yl)-3- (trifluoromethoxy) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2- amine


 


213B




(+)-7, 8-dimethyl-N-(4-(4- methyl-1H-imidazol-1-yl)-3- (trifluoromethoxy) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine


 


214A




(+)-N-(3-(difluoromethyl)-4- (4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


214B




(−)-N-(3-(difluoromethyl)-4- (4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


215A




(+)-7-(4-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


215B




(−)-7-(4-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


216A




(−)-7-(4, 4- difluorocyclohexyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


216B




(+)-7-(4, 4- difluorocyclohexyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


217




(S)-7-(cyclopropylmethyl)- N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


218




(S)-7-(cyclopropylmethyl)- N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


219A




(+)-7-(3, 3- difluorocyclobutyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


219B




(−)-7-(3, 3- difluorocyclobutyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


220A




(−)-7-(3, 5-difluorophenyl)- N-(4-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


220B




(+)-7-(3, 5-difluorophenyl)- N-(4-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


221A




(+)-7-(4, 4- difluorocyclohexyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


221B




(−)-7-(4, 4- difluorocyclohexyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


222A




(+)-N-(3-(difluoromethyl)-4- (4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


222B




(−)-N-(3-(difluoromethyl)-4- (4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1, 4] oxazin-2-amine


 


223A




(−)-7-(3, 5-difluorophenyl)- 8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)-3- (trifluoromethoxy) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2- amine


 


223B




(+)-7-(3, 5-difluorophenyl)- 8-methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)-3- (trifluoromethoxy) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2- amine


 


224




(S)-7-cyclopropyl-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


225




(S)-7-cyclopropyl-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


226A




(+)-4-((8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b][1, 4]oxazin-2-yl) amino) benzonitrile


 


226B




(−)-4-((8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-yl) amino) benzonitrile


 


227




(S)-7-cyclobutyl-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


228A




(+)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


228B




(−)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


229A




(−)-N-(5-chloro-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


229B




(+)-N-(5-chloro-6-(4- methyl-1H-imidazol-1-yl) (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine 


 


230A




(+)-2-methoxy-4-((8-methyl- 7-(trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b][1, 4]oxazin-2-yl) amino) benzonitrile


 


230B




(−)-2-methoxy-4-((8-methyl- 7-(trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-yl) amino) benzonitrile


 


231A




(+)-7-(4, 4- difluorocyclohexyl)-N-(5- methoxy-6-(1-methyl-1H- pyrazol-4-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


231B




(−)-7-(4, 4- difluorocyclohexyl)-N-(5- methoxy-6-(1-methyl-1H- pyrazol-4-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


232A




(+)-2-(4-methyl-1H- imidazol-1-yl)-5-((8-methyl- 7-(trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-yl) amino) benzonitrile


 


232B




(−)-2-(4-methyl-1H- imidazol-1-yl)-5-((8-methyl- 7-(trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-yl) amino) benzonitrile


 


233A




(+)-4-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2-yl) amino) benzonitrile


 


233B




(−)-4-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile


 


234




N-(4-methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-7, 8-dimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine (racemic)


 


235




(S)-7-cyclobutyl-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


236A




(+)-N-(4-methoxy-5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


236B




(−)-N-(4-methoxy-5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


237A




(−)-4-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2- methoxybenzonitrile


 


237B




(+)-4-((7-(3, 5- difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2- methoxybenzonitrile


 


238A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


238B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


239A




(−)-4-(2-((3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide


 


239B




(+)-4-(2-((3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide


 


240




(S)-7-(tert-butyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


241A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan- 3-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


241B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan- 3-yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


242A




(−)-N-(3-methoxy-4-(3- methyl-1H-1, 2, 4-triazol-1- yl) phenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


242B




(+)-N-(3-methoxy-4-(3- methyl-1H-1, 2, 4-triazol-1- yl) phenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


243A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7- (oxetan-3-yl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


243B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7- (oxetan-3-yl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


244A




(+)-7-(3, 5-difluorophenyl)- N-(3-methoxy-4-(3-methyl- 1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4]oxazin-2-amine


 


244B




(−)-7-(3, 5-difluorophenyl)- N-(3-methoxy-4-(3-methyl- 1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


245A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1- (trifluoromethyl) cyclopropyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


245B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1- (trifluoromethyl) cyclopropyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


246




(S)-7-(tert-butyl)-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


247A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1- (trifluoromethyl) cyclopropyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


247B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1- (trifluoromethyl) cyclopropyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine









In another aspect, the invention provides a compound of Formula (II)




or a pharmaceutically acceptable salt thereof, wherein:

R1 is —C1-C4 alkyl which is unsubstituted or substituted with one or more -halo;

each R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo; Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl and halo-substituted C1-C4 alkyl; and Z is imidazolyl or pyrazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.

In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo, and the other R2 is hydrogen or —C1-C4 alkyl.
In some embodiments, both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo.
In some embodiments, R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo.
In some embodiments, Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl and halo-substituted C1-C4 alkyl.
In some embodiments, Z is imidazolyl or pyrazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.
In some embodiments, R1 is methyl; R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and oxo; Y is phenyl or pyridinyl, each of which is substituted with one or more substituent independently selected from the group consisting of -halo and —C1-C4 alkoxy; and Z is imidazolyl or pyrazolyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.
In some embodiments, R1 is methyl; R2 is independently —C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more -halo; Y is phenyl or pyridinyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkoxy; and Z is imidazolyl or pyrazolyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C3 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two -halo.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C3 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two —F.
In some embodiments, each R2 is independently —C1-C6 alkyl.
In some embodiments, each R2 is independently methyl.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two -halo.
In some embodiments, R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or —C1-C4 alkyl, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with two —F.
In some embodiments, both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle.
In some embodiments, both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, each of which is unsubstituted or substituted with two —F.
In some embodiments, Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkoxy.
In some embodiments, Y is phenyl substituted with one -halo.
In some embodiments, Y is phenyl substituted with one —F.
In some embodiments, Y is phenyl substituted with one —C1-C4 alkoxy.
In some embodiments, Y is phenyl substituted with one methoxy.
In some embodiments, Y is pyridinyl substituted with one —C1-C4 alkoxy.
In some embodiments, Y is pyridinyl substituted with one methoxy.
In some embodiments, Z is imidazolyl, which is unsubstituted or substituted with one -halo or —C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one -halo.
In some embodiments, Z is imidazolyl substituted with one —Cl.
In some embodiments, Z is imidazolyl substituted with one —C1-C4 alkyl.
In some embodiments, Z is imidazolyl substituted with one methyl.
In some embodiments, the compound of Formula (II) is a compound selected from the compounds in Table II.







TABLE II







Exemplary Fused Morpholinopyrimidines of Formula (II)









Compound




of Example
Structure
Name





254




N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 7, 7, 8-trimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


255




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


256




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


257




N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


258




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8′- methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


259




N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


260




N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


261




N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-7, 7, 8-trimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


262




7, 7, 8-trimethyl-N-(5-(4- methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


263




8′-methyl-N-(5-(4-methyl- 1H-imidazol-1-yl) pyridin-2- yl)-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


264




N-(3-methoxy-4-(1-methyl- 1H-pyrazol-4-yl) phenyl)-8′- methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine 


 


265




N-(5-(4-methyl-1H- imidazol-1-yl) pyridin-2-yl)- 6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


266




N-(5-methoxy-6-(1-methyl- 1H-pyrazol-4-yl) pyridin-3- yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


267




N-(3-methoxy-4-(1-methyl- 1H-pyrazol-4-yl phenyl)-7, 7, 8-trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


268




N-(5-methoxy-6-(1-methyl- 1H-pyrazol-4-yl) pyridin-3- yl)-8-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


269




N-(3-methoxy-4-(1-methyl- 1H-pyrazol-4-yl) phenyl)-8′- methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


270




N-(5-methoxy-6-(1-methyl- 1H-pyrazol-4-yl) pyridin-3- yl)-7, 7, 8-trimethyl-7, 8- dihydro-6H-pyrimido [5, 4- b] [1, 4] oxazin-2-amine


 


271




N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido 5, 4-b] [1, 4] oxazin]-2′-amine


 


272




N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8′-methyl-6′H, 8′H-spiro [oxetane-3,7′-pyrimido [5, 4- b] [1,4] oxazin]-2′-amine


 


273




N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 8′-methyl-2, 3, 5, 6- tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4- b] [1, 4] oxazin]-2′-amine


 


274




N-(5-methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3- yl)-8′-methyl-2, 3, 5, 6- tetrahydro-6′H, 8′H-spiro pyran-4, 7′-pyrimido [5, 4- b] [1, 4] oxazin1-2′-amine


 


275




N-(3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H- spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


276




3, 3-difluoro-N-(3-methoxy- 4-(4-methyl-1H-imidazol-1- yl) phenyl)-8-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


277




N-(4-(4-chloro-1H-imidazol- 1-yl)-3-methoxyphenyl)-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin1-2′-amine


 


278




3, 3-difluoro-N-(5-methoxy- 6-(4-methyl-1H-imidazol-1- yl) pyridin-3-yl)-8′-methyl- 6′H, 8′H-spiro [cyclobutane- 1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine


 


279




N-(3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8′- methyl-6H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


289A




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


289B




(−)-N-(3 -methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


290A




(−)-N-(3 -methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


290B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


291




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


292




(S)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 6a-methyl-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


293




(R)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


294




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


295




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10- tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


296




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)- 8-methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


297




(S)-8, 8-difluoro-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


298




(S)-8, 8-difluoro-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 6a, 7, 8, 9-tetrahydro-6H- pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


299




(S)-N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)- 6a, 7, 9, 10-tetrahydro-6H- [1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


300




(R)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10- tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine


 


301A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H- spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


301B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H- spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′- amine


 


302A




(+)-2-((5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one


 


302B




(−)-2-((5-methoxy-6-(4- methyl-1H-imidazol-1-yl) pyridin-3-yl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one


 


303




(R)-8, 8-difluoro-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


304A




(−)-7, 7-difluoro-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


304B




(+)-7, 7-difluoro-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


305A




(+)-7, 7-difluoro-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 6a, 7, 8, 9-tetrahydro-6H- pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine


 


305B




(−)-7, 7-difluoro-N-(5- methoxy-6-(4-methyl-1H- imidazol-1-yl) pyridin-3-yl)- 6a, 7, 8, 9-tetrahydro-6H- pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine









5.3 Methods for Making Fused Morpholinopyrimidines
Methods useful for making the Fused Morpholinopyrimidines are set forth in the Examples below and generalized in Schemes 1-10.
Schemes 1-10 represent general synthetic schemes for manufacturing Fused Morpholinopyrimidines. These schemes are illustrative and are not meant to limit the possible techniques one skilled in the art may use to manufacture compounds disclosed herein. Different methods will be evident to those skilled in the art. Additionally, the various steps in the synthesis may be performed in an alternate sequence or order to give the desired compound(s).
Various modifications to these methods may be envisioned by those skilled in the art to achieve similar results to that of the inventors provided below. For example, optional protecting groups can be used as described, for example, in Greene et al., Protective Groups in Organic Synthesis (3rd ed. 1999).




As shown in Scheme 1, a compound of formula 1 is reacted with the compound of formula 2 using Pd-catalyzed coupling conditions to provide a compound of formula 3.




As shown in Scheme 2, alternatively, a compound of formula 4 is reacted with the compound of formula 5 under basic conditions to provide a compound of formula 6. The compound of formula 6 is reduced to provide a compound of formula 3.




As shown in Scheme 3, a compound of formula 7 is reacted with methyl amine under basic conditions to provide a compound of formula 8. The compound of formula 8 is then reacted with BBr3 to provide a compound of formula 9. The compound of formula 9 is reacted using, for example, a compound of formula 10, to provide a compound of formula 11. The compound of formula 11 is then cyclized to from a compound of formula 12. The compound of formula 12 is reacted with a compound of formula 3 to provide a Fused Morpholinopyrimidine.







As shown in Scheme 4, a compound of formula 7 is reacted with BBr3 to provide a compound of formula 13. The compound of formula 13 is then protected to form compound 14. Enantio-pure compound of formula 15 is reduced with LAH to provide a compound of formula 16. The compound of formula 16 is then reacted with compound 14 to form compound 17. The compound of formula 17 is then deprotected under acidic conditions to provide a compound of formula 18. The compound of formula 18 is then cyclized to form a compound of formula 19. The compound of formula 19 is reacted with a compound of formula 3 to provide an enantiomerically-pure Fused Morpholinopyrimidine at the chiral carbon atom (marked with *).




As shown in Scheme 5, a compound of formula 11 is reduced with sodium borohydride to provide a compound of formula 20. The compound of formula 20 is then reacted with MsCl or Tf2O to provide a compound of formula 21. The compound of formula 21 is cyclized under basic conditions to provide a compound of formula 12. The compound of formula 12 is reacted with a compound of formula 3 to provide a Fused Morpholinopyrimidine.




As shown in Scheme 6, Enantio-pure compound of formula 22 is reacted with SOCl2 to provide a compound of formula 23. The compound of formula 23 is then protected to form compound 24. The compound of formula 24 is reduced with LAH to provide a compound of formula 25. The compound of formula 25 is then reacted with compound 14 to form compound 17. The compound of formula 17 is then deprotected under acidic conditions to provide a compound of formula 18. The compound of formula 18 is then cyclized to provide a compound of formula 19. The compound of formula 19 is reacted with a compound of formula 3 to provide an enantiomerically-pure Fused Morpholinopyrimidine at the chiral carbon atom (marked with *).




As shown in Scheme 7, a compound of formula 7 is reacted with a compound of formula 26 under basic conditions to provide a compound of formula 27. The compound of formula 27 is then reacted with BBr3 to provide a compound of formula 28. The compound of formula 28 is then protected to form compound of formula 29. The compound of formula 29 is then cyclized to form a compound of formula 30. The compound of formula 30 is then deprotected under acidic conditions to provide a compound of formula 31. The compound of formula 31 is then alkylated to provide a compound of formula 32. The compound of formula 32 is reacted with a compound of formula 3 to provide a Fused Morpholinopyrimidine.




As shown in Scheme 8, The compound of formula 33 is coupled with compound 14 to form compound 34. The compound of formula 34 is then deprotected under acidic conditions to provide a compound of formula 35. The compound of formula 35 is then cyclized to provide a compound of formula 36. The compound of formula 36 is reacted with a compound of formula 3 to provide a Fused Morpholinopyrimidine.




As shown in Scheme 9, Enantio-pure compound of formula 37 is reacted with compound 14 to form compound 38. The compound of formula 38 is then deprotected under acidic conditions to provide a compound of formula 39. The compound of formula 39 is then cyclized to provide a compound of formula 40. The compound of formula 40 is reacted with a compound of formula 3 to provide an enantiomerically-pure Fused Morpholinopyrimidine at the chiral carbon atom (marked with *).




As shown in Scheme 10, a compound of formula 41 is reacted with iodine to provide a compound of formula 42. The compound of formula 42 is reacted with a compound of formula 13 to provide a compound of formula 31. The compound of formula 31 is then alkylated to provide a compound of formula 32. The compound of formula 32 is reacted with a compound of formula 3 to provide a Fused Morpholinopyrimidine.
5.4 Pharmaceutical Compositions Comprising a Fused Morpholinopyrimidine
In another aspect, the present disclosure provides pharmaceutical compositions for treating, preventing, or ameliorating a symptom of a neurodegenerative disease in a subject having a neurodegenerative disease, wherein the pharmaceutical composition comprises a therapeutically effective amount of a Fused Morpholinopyrimidine, and a pharmaceutically acceptable carrier or vehicle.
As set out above, in some embodiments, Fused Morpholinopyrimidines are provided in the form of pharmaceutically acceptable salts. These salts can be prepared in situ during the final isolation and purification of the compounds described herein, or by separately reacting a purified compound described herein in its free base or acid form with a suitable organic or inorganic acid or base, and isolating the salt thus formed. Representative salts include the hydrobromide, hydrochloride, sulfate, bisulfate, phosphate, nitrate, acetate, valerate, oleate, palmitate, stearate, laurate, benzoate, lactate, phosphate, tosylate, citrate, maleate, fumarate, succinate, tartrate, napthylate, mesylate, glucoheptonate, lactobionate, laurylsulphonate, ammonium, amine salts and the like. See, for example, Berge, et al., (1977) “Pharmaceutical Salts”, J. Pharm. Sci. 66:1-19.
The pharmaceutically acceptable salts of Fused Morpholinopyrimidines include the conventional nontoxic salts or acid salts of the compounds, e.g., from non-toxic organic or inorganic acids. For example, such conventional nontoxic salts include those derived from inorganic acids, such as hydrochloride, hydrobromic, sulfuric, sulfamic, phosphoric, nitric, and the like; and the salts prepared from organic acids, such as acetic, butionic, succinic, glycolic, stearic, lactic, malic, tartaric, citric, ascorbic, palmitic, maleic, hydroxymaleic, phenylacetic, glutamic, benzoic, salicyclic, sulfanilic, 2-acetoxybenzoic, fumaric, toluenesulfonic, methanesulfonic, ethane disulfonic, oxalic, isothionic and the like.
In general, a suitable dose of a Fused Morpholinopyrimidine will be in the range of 0.01 to 100 mg per kilogram body weight of the recipient per day or in the range of 0.2 to 10 mg per kilogram body weight per day. The desired dose can be administered once daily, but may be dosed as two, three, four, five, six or more sub-doses administered at appropriate intervals throughout the day.
The concentration of compounds included in compositions used in the methods described herein can range from about 1 nM to about 100 μM. Effective doses are believed to range from about 10 picomole/kg to about 100 micromole/kg.
A Fused Morpholinopyrimidine can be administered as the sole active agent, or in combination with other known therapeutics to be beneficial in the treatment of neurodegenerative diseases. In any event, the administering physician can provide a method of treatment that is prophylactic or therapeutic by adjusting the amount and timing of drug administration on the basis of observations of one or more symptoms (e.g., motor or cognitive function as measured by standard clinical scales or assessments) of the disease being treated.
Details on techniques for formulation and administration are well described in the scientific and patent literature, see, e.g., Remington: The Science and Practice of Pharmacy (2 Volumes), (22nd Edition, 2012), Pharmaceutical Press (“Remington's”). After a pharmaceutical composition has been formulated in an acceptable carrier, it can be placed in an appropriate container and labeled for treatment of an indicated condition. For administration of a Fused Morpholinopyrimidine, such labeling would include, e.g., instructions concerning the amount, frequency, and method of administration.
The formulations may conveniently be presented in unit dosage form and may be prepared by any methods well known in the art of pharmacy. The amount of active ingredient which can be combined with a carrier material to produce a single dosage form will vary depending upon the subject being treated, the particular mode of administration. The amount of active ingredient, which can be combined with a carrier or vehicle material to produce a single dosage form will generally be that amount of the compound which produces a therapeutic effect. Generally, out of 100%, this amount will range from about 1% to about 99% of active ingredient, preferably from about 5% to about 70%, most preferably from about 10% to about 30%.
The compounds and pharmaceutical compositions described herein can be employed in combination therapies, that is, the compounds and pharmaceutical compositions can be administered concurrently with, prior to, or subsequent to, one or more other desired therapeutics or medical procedures. The particular combination of therapies (therapeutics or procedures) to employ in a combination regimen will take into account compatibility of the desired therapeutics and/or procedures and the desired therapeutic effect to be achieved.
Methods of preparing these formulations or compositions include the step of bringing into association a compound described herein with the carrier and, optionally, one or more accessory ingredients. In general, the formulations are prepared by uniformly and intimately bringing into association a compound described herein with liquid carriers, or finely divided solid carriers, or both, and then, if necessary, shaping the product.
When a Fused Morpholinopyrimidine is administered as pharmaceuticals to humans or animals, it can be given per se or as a pharmaceutical composition containing, for example, 0.1% to 99.5% (more preferably, 0.5% to 90%) of active ingredient in combination with a pharmaceutically acceptable carrier.
The pharmaceutical compositions described herein can be administered in a variety of dosage forms including, but not limited to, a solid dosage form, a liquid dosage form, an oral dosage form, a parenteral dosage form, an intranasal dosage form, a suppository, a lozenge, a troche, a buccal dosage form, a controlled release dosage form, a pulsed release dosage form, an immediate release dosage form, an intravenous solution, a suspension or combinations thereof.
Oral Formulations and Administration
Pharmaceutical formulations described herein suitable for oral administration can be in the form of capsules, cachets, pills, tablets, caplet, lozenges (using a flavored basis, usually sucrose and acacia or tragacanth), powders, granules, or as a solution or a suspension in an aqueous or non-aqueous liquid, or as an oil-in-water or water-in-oil liquid emulsion, or as an elixir or syrup, or as pastilles (using an inert base, such as gelatin and glycerin, or sucrose and acacia) and/or as mouthwashes and the like, each containing a predetermined amount of a compound described herein as an active ingredient. The dosage can be an oral dosage form that is a controlled release dosage form. A Fused Morpholinopyrimidine can also be administered as a bolus, electuary or paste.
In solid dosage forms described herein for oral administration (capsules, tablets, pills, dragees, powders, granules and the like), the active ingredient is mixed with one or more pharmaceutically acceptable carriers and/or any of the following: fillers or extenders, such as starches, lactose, sucrose, glucose, mannitol, and/or silicic acid; binders, such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinyl pyrrolidone, sucrose and/or acacia; humectants, such as glycerol; disintegrating agents, such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, sodium carbonate, and sodium starch glycolate; solution retarding agents, such as paraffin; absorption accelerators, such as quaternary ammonium compounds; wetting agents, such as, for example, cetyl alcohol, glycerol monostearate, and polyethylene oxide-polybutylene oxide copolymer; absorbents, such as kaolin and bentonite clay; lubricants, such a talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof; and coloring agents. In the case of capsules, tablets and pills, the pharmaceutical compositions can also comprise buffering agents. Solid compositions of a similar type can also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugars, as well as high molecular weight polyethylene glycols and the like.
A tablet can be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets can be prepared using a binder (for example, gelatin or hydroxybutylmethyl cellulose), lubricant, inert diluent, preservative, disintegrant (for example, sodium starch glycolate or cross-linked sodium carboxymethyl cellulose), surface-active or dispersing agent. Molded tablets can be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
Tablets, and other solid dosage forms of the pharmaceutical compositions described herein, such as dragees, capsules, pills and granules, can optionally be scored or prepared with coatings and shells, such as enteric coatings and other coatings well known in the pharmaceutical-formulating art. They can also be formulated so as to provide slow or controlled release of the active ingredient therein using, for example, hydroxybutylmethyl cellulose in varying proportions to provide the desired release profile, other polymer matrices, liposomes and/or microspheres. They can be sterilized by, for example, filtration through a bacteria-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions, which can be dissolved in sterile water, or some other sterile injectable medium immediately before use. These compositions can also optionally contain opacifying agents and may be of a composition that they release the active ingredient(s) only, or preferentially, in a certain portion of the gastrointestinal tract, optionally, in a delayed manner Examples of embedding compositions which can be used include polymeric substances and waxes. The active ingredient can also be in micro-encapsulated form, if appropriate, with one or more of the above-described excipients.
Capsules for oral use include hard gelatin capsules in which the active ingredient is mixed with a solid diluent, and soft gelatin capsules, wherein the active ingredients is mixed with water or an oil, such as peanut oil, liquid paraffin or olive oil.
Dragee cores are provided with suitable coatings. For this purpose, concentrated sugar solutions may be used, which may optionally contain gum arabic, talc, polyvinyl pyrrolidone, carbopol gel, polyethylene glycol, and/or titanium dioxide, lacquer solutions, and suitable organic solvents or solvent mixtures. Dyestuffs or pigments can be added to the tablets or dragee coatings for identification or to characterize different combinations of active compound doses.
Liquid dosage forms for oral administration of the compounds described herein include pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active ingredient, the liquid dosage forms may contain inert diluents commonly used in the art, such as, for example, water or other solvents, solubilizing agents and emulsifiers, such as ethyl alcohol, isobutyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, butylene glycol, 1,3-butylene glycol, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor and sesame oils), glycerol, tetrahydrofuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof. Additionally, cyclodextrins, e.g., hydroxybutyl-β-cyclodextrin, may be used to solubilize compounds.
Suspensions, in addition to the active compounds, can contain suspending agents as, for example, ethoxylated isostearyl alcohols, polyoxyethylene sorbitol and sorbitan esters, microcrystalline cellulose, aluminum metahydroxide, bentonite, agar and tragacanth, and mixtures thereof.
Besides inert diluents, the oral compositions can also include adjuvants, such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, coloring, perfuming and preservative agents.
Pharmaceutical preparations for oral use can be obtained through combination of a Fused Morpholinopyrimidine with a solid excipient, optionally grinding a resulting mixture, and processing the mixture of granules, after adding suitable additional compounds, if desired, to obtain tablets or dragee cores. Suitable solid excipients in addition to those previously mentioned are carbohydrate or protein fillers that include, but are not limited to, sugars, including lactose, sucrose, mannitol, or sorbitol; starch from corn, wheat, rice, potato, or other plants; cellulose, such as methyl cellulose, hydroxypropylmethyl-cellulose or sodium carboxymethylcellulose; and gums including arabic and tragacanth; as well as proteins, such as gelatin and collagen. If desired, disintegrating or solubilizing agents can be added, such as the cross-linked polyvinyl pyrrolidone, agar, alginic acid, or a salt thereof, such as sodium alginate.
Pharmaceutical preparations for oral use can be presented as aqueous or liposome formulations. Aqueous suspensions can contain a Fused Morpholinopyrimidine in admixture with excipients suitable for the manufacture of aqueous suspensions. Such excipients include a suspending agent, such as sodium carboxymethylcellulose, methylcellulose, hydroxypropylmethylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia, and dispersing or wetting agents, such as a naturally occurring phosphatide (e.g., lecithin), a condensation product of an alkylene oxide with a fatty acid (e.g., polyoxyethylene stearate), a condensation product of ethylene oxide with a long chain aliphatic alcohol (e.g., heptadecaethylene oxycetanol), a condensation product of ethylene oxide with a partial ester derived from a fatty acid and a hexitol (e.g., polyoxyethylene sorbitol mono-oleate), or a condensation product of ethylene oxide with a partial ester derived from fatty acid and a hexitol anhydride (e.g., polyoxyethylene sorbitan mono-oleate). The aqueous suspension can also contain one or more preservatives, such as ethyl or n-propyl p-hydroxybenzoate, one or more coloring agents, one or more flavoring agents and one or more sweetening agents, such as sucrose, aspartame or saccharin. Formulations can be adjusted for osmolarity.
Oil suspensions can be formulated by suspending a Fused Morpholinopyrimidine in a vegetable oil, such as arachis oil, olive oil, sesame oil or coconut oil, or in a mineral oil, such as liquid paraffin; or a mixture of these. The oil suspensions can contain a thickening agent, such as beeswax, hard paraffin or cetyl alcohol. Sweetening agents can be added to provide a palatable oral preparation, such as glycerol, sorbitol or sucrose. These formulations can be preserved by the addition of an antioxidant, such as ascorbic acid. As an example of an injectable oil vehicle, see Minto, J. Pharmacol. Exp. Ther. 281:93-102, 1997. The pharmaceutical formulations can also be in the form of oil-in-water emulsions. The oily phase can be a vegetable oil or a mineral oil, described above, or a mixture of these. Suitable emulsifying agents include naturally-occurring gums, such as gum acacia and gum tragacanth, naturally occurring phosphatides, such as soybean lecithin, esters or partial esters derived from fatty acids and hexitol anhydrides, such as sorbitan mono-oleate, and condensation products of these partial esters with ethylene oxide, such as polyoxyethylene sorbitan mono-oleate. The emulsion can also contain sweetening agents and flavoring agents, as in the formulation of syrups and elixirs. Such formulations can also contain a demulcent, a preservative, or a coloring agent.
Parenteral Formulations and Administration
In another embodiment, a Fused Morpholinopyrimidine can be administered parenterally, such as intravenous (IV) or intramuscular (IM) administration. The formulations for administration will commonly comprise a solution of a Fused Morpholinopyrimidine dissolved in a pharmaceutically acceptable carrier. Administration of a Fused Morpholinopyrimidine to any of the above mentioned sites can be achieved by direct injection of the pharmaceutical composition comprising the Fused Morpholinopyrimidine or by the use of infusion pumps. The pharmaceutical compositions can be formulated in solid form and re-dissolved or suspended immediately prior to use. Lyophilized forms are also included. The injection can be, for example, in the form of a bolus injection or continuous infusion (e.g., using infusion pumps) of pharmaceutical composition.
Pharmaceutical compositions suitable for parenteral administration comprise one or more compounds described herein in combination with one or more pharmaceutically-acceptable sterile isotonic aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, or sterile powders which may be reconstituted into sterile injectable solutions or dispersions just prior to use, which may contain antioxidants, buffers, bacteriostats, solutes which render the formulation isotonic with the blood of the intended recipient or suspending or thickening agents.
Among the acceptable vehicles and solvents that can be employed for formulation and/or reconstitution are water (e.g., water for injection) and Ringer's solution, an isotonic sodium chloride. In addition, sterile fixed oils can conventionally be employed as a solvent or suspending medium. For this purpose, any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids, such as oleic acid can likewise be used in the preparation of injectables. These solutions are sterile and generally free of undesirable matter. These formulations may be sterilized by conventional, well known sterilization techniques such as gamma-radiation or electron beam sterilization. The formulations can contain pharmaceutically acceptable auxiliary substances as required to approximate physiological conditions, such as pH adjusting and buffering agents, toxicity adjusting agents, e.g., sodium acetate, sodium chloride, potassium chloride, calcium chloride, sodium lactate and the like. The concentration of a Fused Morpholinopyrimidine in these formulations can vary widely, and will be selected primarily based on fluid volumes, viscosities, body weight, and the like, in accordance with the particular mode of administration selected and the subject's needs. For IV administration, the formulation can be a sterile injectable preparation, such as a sterile injectable aqueous or oleaginous suspension. This suspension can be formulated according to the known art using those suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation can also be a sterile injectable solution or suspension in a nontoxic parenterally-acceptable diluent or solvent, such as a solution of 1,3-butanediol.
In some embodiments, a Fused Morpholinopyrimidine can be administered by introduction into the central nervous system of the subject, e.g., into the cerebrospinal fluid of the subject. The formulations for administration will commonly comprise a solution of the Fused Morpholinopyrimidine dissolved in a pharmaceutically acceptable carrier. In certain aspects, the Fused Morpholinopyrimidine is introduced intrathecally, e.g., into a cerebral ventricle, the lumbar region, or the cisterna magna.
In some embodiments, the pharmaceutical composition comprising a Fused Morpholinopyrimidine is administered into a subject intrathecally. As used herein, the term “intrathecal administration” is intended to include delivering a pharmaceutical composition comprising a Fused Morpholinopyrimidine directly into the cerebrospinal fluid of a subject, by techniques including lateral cerebroventricular injection through a borehole or cisternal or lumbar puncture or the like (described in Lazorthes et al., Advances in Drug Delivery Systems and Applications in Neurosurgery, 1991, 18:143-192 and Omaya et al., Cancer Drug Delivery, 1984, 1:169-179, the contents of which are incorporated herein by reference). The term “lumbar region” is intended to include the area between the third and fourth lumbar (lower back) vertebrae. The term “cisterna magna” is intended to include the area where the skull ends and the spinal cord begins at the back of the head. The term “cerebral ventricle” is intended to include the cavities in the brain that are continuous with the central canal of the spinal cord. In some embodiments, the pharmaceutical composition is administered by injection into the cisterna magna, or lumbar area of a subject.
Depot Formulations and Administration
A Fused Morpholinopyrimidine can be formulated as a depot preparation. Such long acting formulations may be administered by implantation or transcutaneous delivery (e.g., subcutaneously or intramuscularly), intramuscular injection or a transdermal patch. Thus, for example, the compounds may be formulated with suitable polymeric or hydrophobic materials (e.g., as an emulsion in an acceptable oil) or ion exchange resins, or as sparingly soluble derivatives, for example, as a sparingly soluble salt.
In some cases, in order to prolong the effect of a drug, it is desirable to slow the absorption of the drug from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material having poor water solubility. The rate of absorption of the drug then depends upon its rate of dissolution, which, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally-administered drug form is accomplished by dissolving or suspending the drug in an oil vehicle. One strategy for depot injections includes the use of polyethylene oxide-polybutylene oxide copolymers, wherein the vehicle is fluid at room temperature and solidifies at body temperature.
Injectable depot forms can be made by forming microencapsule matrices of the subject compounds in biodegradable polymers, such as polylactide-polyglycolide. Depending on the ratio of drug to polymer, and the nature of the particular polymer employed, the rate of drug release can be controlled. Examples of other biodegradable polymers include poly (orthoesters) and poly (anhydrides). Depot injectable formulations can also be prepared by entrapping the drug in liposomes or microemulsions, which are compatible with body tissue.
Intranasal Formulations and Administration
For administration by inhalation, the compounds are conveniently delivered in the form of an aerosol spray presentation from pressurized packs or a nebulizer, with the use of a suitable propellant, e.g., dichlorodifluoromethane, trichlorofluoromethane, dichlorotetrafluoroethane, carbon dioxide or other suitable gas. In the case of a pressurized aerosol the dosage unit may be determined by providing a valve to deliver a metered amount. Capsules and cartridges of e.g., gelatin for use in an inhaler or insufflator may be formulated containing a powder mix of the compound and a suitable powder base, such as lactose or starch.
Other Formulations and Modes of Administration
For transmucosal administration (e.g., buccal, rectal, nasal, ocular, etc.), penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art.
Other delivery systems can include time-release, delayed release or sustained release delivery systems. Such systems can avoid repeated administrations of the compounds, increasing convenience to the subject and the physician. Many types of release delivery systems are available and known to those of ordinary skill in the art. They include polymer base systems such as poly(lactide-glycolide), copolyoxalates, polycaprolactones, polyesteramides, polyorthoesters, polyhydroxybutyric acid and polyanhydrides. Microcapsules of the foregoing polymers containing drugs are described in, for example, U.S. Pat. No. 5,075,109. Delivery systems also include non-polymer systems that are: lipids including sterols, such as cholesterol, cholesterol esters and fatty acids or neutral fats, such as mono-, di- and tri-glycerides; hydrogel release systems; silastic systems; peptide based systems; wax coatings; compressed tablets using conventional binders and excipients; partially fused implants; and the like. Specific examples include, but are not limited to: (a) erosional systems in which an agent described herein is contained in a form within a matrix, such as those described in U.S. Pat. Nos. 4,452,775, 4,675,189, and 5,736,152, and (b) diffusional systems in which an active component permeates at a controlled rate from a polymer, such as described in U.S. Pat. Nos. 3,854,480, 5,133,974 and 5,407,686. In addition, pump-based hardware delivery systems can be used, some of which are adapted for implantation.
5.5 Treatment, Prevention or Amelioration of Symptoms of a Neurodegenerative Disease
In another aspect, a method for treating a neurodegenerative disease is described, comprising administering to a subject an effective amount a pharmaceutical composition comprising an effective amount of a Fused Morpholinopyrimidine.
In some embodiments, the method for treating a neurodegenerative disease is a method for reducing or ameliorating a symptom of the neurodegenerative disease.
In some embodiments, a method for reducing or ameliorating a symptom of a neurological disease is described, comprising administering to a subject in need thereof an effective amount of a Fused Morpholinopyrimidine. Ameliorating or reducing the symptoms can be manifested in a variety of ways, for example by improvement in cognitive function can be assessed relative to the cognitive function of the subject prior to being treated or being administered a Fused Morpholinopyrimidine or a pharmaceutical composition comprising an effective amount of a Fused Morpholinopyrimidine.
Exemplary symptoms of neurological disease that can be reduced or ameliorated by administration of a Fused Morpholinopyrimidine are loss of memory, loss of cognition, loss of reasoning and/or loss of judgment. The loss of each of memory, cognition, reasoning and/or judgment can be progressive or sudden. Dementia is an exemplary symptom of neurodegenerative disease. Administration of a Fused Morpholinopyrimidine can reduce or improve one or more of these symptoms.
Exemplary cognitive functions that can be improved by administration of a Fused Morpholinopyrimidine are attention, learning, delayed memory, working memory, visual learning, speed of processing, vigilance, verbal learning, visual motor function, social cognition, long term memory or executive function.
In one embodiment, the neurodegenerative disease is Alzheimer's disease. In some embodiments, the neurodegenerative disease is early onset Alzheimer's disease. In some embodiments, the early onset Alzheimer's disease is autosomal dominant early onset Alzheimer's disease.
In some embodiments, the subject is 65 years or older. In some embodiments, the subject is 55 years old or younger, or 50 years old or younger. In some embodiments, the subject is older than 55 years and younger than 65 years. In some embodiments, the subject is older than 55 years.
In some embodiments, the neurodegenerative disease is panic disorder, obsessive compulsive disorder, delusional disorder, drug-induced psychosis, post-traumatic stress disorder, age-related cognitive decline, attention deficit/hyperactivity disorder, personality disorder of the paranoid type, personality disorder of the schizoid type, dyskinesia, choreiform condition, psychosis associated with Parkinson's disease, psychotic symptoms associated with Alzheimer's disease, mood disorder, or dementia.
In some embodiments, the neurodegenerative disease is cognitive impairment, myclonus, seizures, Parkinsonism, extrapyramidal signs (EPS), apraxia, dystonia, dementia with Lewy bodies (DLB), aphasia, visual agnosia, or ataxia.
In some embodiments, the subject has impaired cognitive function including one or more of attention, learning, delayed memory, working memory, visual learning, speed of processing, vigilance, verbal learning, visual motor function, social cognition, long term memory or executive function.
In some embodiments, the subject has a mutation in at least one gene selected from PSEN1, PSEN2 and APP. In some embodiments, the mutation in PSEN1, PSEN2 or APP is a missense mutation.
In some embodiments, the invention provides a method for treating or ameliorating a symptom of neurodegenerative disease (e g, Alzheimer's disease) in a subject with an increased level of Aβ42 in cerebrospinal fluid, the method comprising administering to a subject in need thereof an effective amount of a Fused Morpholinopyrimidine. In such subject, the increased level of Aβ42 in cerebrospinal fluid can be detected relative to the level of Aβ42 in cerebrospinal fluid of a healthy subject.
In some embodiments, the invention provides a method for lowering Aβ42 concentration in a subject, the method comprising administering to a subject in need thereof an effective amount of a Fused Morpholinopyrimidine. In some embodiments, the subject has an elevated Aβ42 concentration relative to a healthy subject.
In some embodiments, the invention provides a method for preventing increase of Aβ42 concentration in a subject, the method comprising administering to a subject in need thereof an effective amount of a Fused Morpholinopyrimidine.
5.6 Kits
Described herein are kits that can simplify the administration of an Fused Morpholinopyrimidine to a subject. The kit can comprise one or more containers filled with one or more of the ingredients of the pharmaceutical compositions described herein. Optionally associated with such container(s) can be a notice in the form prescribed by a governmental agency regulating the manufacture, use or sale of pharmaceuticals or biological products, which notice reflects approval by the agency of manufacture, use or sale for human administration.
A typical kit comprises a unit dosage form of a Fused Morpholinopyrimidine. In one embodiment, the unit dosage form is a container, which can be sterile, containing an effective amount of a Fused Morpholinopyrimidine and a pharmaceutically acceptable carrier or vehicle. The kit can further comprise a label or printed instructions instructing the use of the Fused Morpholinopyrimidine to treat or prevent a neurodegenerative disease. The kit can also further comprise a unit dosage form of another prophylactic or therapeutic agent, for example, a container containing an effective amount of the other prophylactic or therapeutic agent. In one embodiment, the kit comprises a container containing an effective amount of a Fused Morpholinopyrimidine and an effective amount of another prophylactic or therapeutic agent. Examples of other prophylactic or therapeutic agents include, but are not limited to, those listed above.
The representative examples which follow are intended to help illustrate the invention, and are not intended to, nor should they be construed to, limit the scope of the invention. Indeed, various modifications of the invention and many further embodiments thereof, in addition to those shown and described herein, will become apparent to those skilled in the art from the full contents of this document, including the examples which follow and the references to the scientific and patent literature cited herein. It should further be appreciated that the contents of those cited references are incorporated herein by reference to help illustrate the state of the art. The following examples contain additional information, exemplification and guidance which can be adapted to the practice of this invention in its various embodiments and equivalents thereof. The examples do not limit the scope of the invention described in the claims.
6. EXAMPLES
Example 1
Synthesis of 4-(2-methylpyridin-4-yl)aniline




To stirred solution of 4-bromo-2-methylpyridine (2 g, 12.00 mmol) in 1, 4-dioxane (50 mL) and water (12 mL), under an argon atmosphere were added sodium carbonate (3.08 g, 29.00 mmol), 4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)aniline (3.05 g, 14.00 mmol) and Pd(dppf)Cl2 (0.25 g, 0.3 mmol) at room temperature and purged under an argon atmosphere for 10 minutes. The reaction mixture was stirred at 100° C. for 8 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite and the filtrate was concentrated in vacuo. The crude material was purified through silica gel column chromatography using EtOAc to afford 4-(2-methylpyridin-4-yl)aniline (2 g, 92%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.34 (d, 1H), 7.52 (d, 2H), 7.46 (s, 1H), 7.43 (d, 1H), 6.62 (d, 2H), 5.48 (s, 2H), 2.47 (s, 3H); LCMS: 184.9 [M++1] at 2.31 RT (98.49%); TLC: 100% EtOAc (Rf: 0.3).
Example 2
Synthesis of 3-methoxy-4-(2-methylpyridin-4-yl)aniline




Synthesis of 4-(2-methoxy-4-nitrophenyl)-2-methylpyridine
To a stirred solution of 4-bromo-2-methylpyridine (2.5 g, 14.53 mmol) in 1, 4-dioxane (50 mL) under an argon atmosphere were added bis (pinacolato) diborane ester (4.04 g, 15.98 mmol), potassium acetate (2.84 g, 29.06 mmol), tricyclohexylphosphine (0.61 g, 21.81 mmol) and purged for 30 min. To this was added Pd2(dba)3 (0.66 g, 0.726 mmol) and stirred at reflux for 4 h. After consumption of 4-bromo-2-methylpyridine (monitored by TLC), the reaction mixture was cooled to RT, then added 4-bromo-2-methylpyridine (2.71 g, 14.49 mmol), cesium carbonate (21.2 g, 65.21 mmol), Pd(PPh3)4 (1.68 g, 14.49 mmol), 1,4-dioxane (50 mL), water (10 mL) and stirred for 30 min. The reaction mixture was heated to reflux and stirred for 16 h. After consumption of 1-chloro-2-methoxy-4-nitrobenzene (monitored by TLC), the reaction was cooled to RT and filtered through celite. The filtrate was concentrated in vacuo to afford the crude product. The crude was purified through silica gel column chromatography to afford 4-(2-methoxy-4-nitrophenyl)-2-methylpyridine (3.0 g, 85%) as a colorless semisolid. 1H-NMR (CDCl3, 400 MHz): δ 8.56 (d, 1H), 7.94 (d, 1H), 7.87 (s, 1H), 7.71-7.68 (m, 1H), 7.28 (s, 1H), 7.24-7.21 (m, 1H), 3.94 (s, 3H), 2.62 (s, 3H); Mass (ESI): 245 [M+1], 279 [M+Na]; TLC: 30% EtOAc:hexane (Rf: 0.9).
Synthesis of 3-methoxy-4-(2-methylpyridin-4-yl) aniline
To a stirred solution of 4-(2-methoxy-4-nitrophenyl)-2-methylpyridine (3.0 g, 12.29 mmol) in MeOH (50 mL) was added Raney Ni (500 mg) under an argon atmosphere and stirred at room temperature for 4 h under H2 atmosphere (balloon pressure). After consumption of the starting material (monitored by TLC), the reaction was filtered through celite and the filtrate was concentrated in vacuo to afford 3-methoxy-4-(2-methylpyridin-4-yl) aniline (2.0 g, 76%) used without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 8.32 (d, 1H), 7.28 (s, 1H), 7.24-7.21 (m, 1H), 7.12-7.08 (m, 1H), 6.24 (s, 1H), 6.24 (d, 1H), 5.42 (br s, 2H), 3.74 (s, 3H), 2.43 (s, 3H); Mass (ESI): 215 [M+1]; TLC: 100% EtOAc (Rf: 0.4).
Example 3
Synthesis of 3-fluoro-4-(2-methylpyridin-4-yl) aniline




Synthesis of 4-(2-fluoro-4-nitrophenyl)-2-methylpyridine
To a stirred solution of 4-bromo-2-methylpyridine (3 g, 17.44 mmol) in 1, 4-dioxane (150 mL) under an argon atmosphere were added Bis (pinacolato) diboron (4.87 g, 19.18 mmol), tricyclohexyl phosphine (732 mg, 2.61 mmol), potassium acetate (3.4 g, 34.88 mmol), Pd2(dba)3 (798 mg, 0.87 mmol). The reaction was purged under an argon atmosphere for 10 min at room temperature, heated to 100° C. and stirred for 3 h. After the disappearance of 4-bromo-2-methylpyridine (monitored by TLC) the reaction mixture was cooled to room temperature, 1-bromo-2-fluoro-4-nitrobenzene (3.8 g, 17.43 mmol), cesium carbonate (25.49 g, 78.43 mmol) and Pd(PPh3)4 (2.01 g, 1.74 mmol) were added and refluxed for 16 h. After consumption of 1-bromo-2-fluoro-4-nitrobenzene (monitored by TLC), the volatile components were evaporated in vacuo to afford the crude material which was purified through silica gel column chromatography (20% EtOAc:hexanes) to afford 4-(2-fluoro-4-nitrophenyl)-2-methylpyridine (2.4 g, 59%) as a pale yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.60 (d, 1H), 8.29-8.26 (m, 1H), 8.20-8.18 (m, 1H), 7.91 (t, 1H), 7.51 (s, 1H), 7.44 (d, 1H), 2.56 (s, 3H); LC-MS: 232.9 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.2).
Synthesis of 3-fluoro-4-(2-methylpyridin-4-yl) aniline
To a stirred solution of 4-(2-fluoro-4-nitrophenyl)-2-methylpyridine (2.4 g, 10.33 mmol) in MeOH (45 mL) under an argon atmosphere was added Raney nickel (300 mg) at room temperature and stirred for 4 h under a hydrogen atmosphere (balloon pressure). After consumption of the starting material (monitored by TLC), the reaction was filtered through celite and the filtrate was concentrated in vacuo to afford 3-fluoro-4-(2-methylpyridin-4-yl) aniline (1.8 g, 86%) as a pale red solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.38 (d, 1H), 7.31-7.28 (m, 2H), 7.24-7.23 (m, 1H), 6.48 (d, 1H), 6.45-6.38 (m, 1H), 5.75 (s, 2H), 2.47 (s, 3H); LC-MS: 203 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 1.88 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.3).
Example 4
Synthesis of 4-(4-methyl-1H-imidazol-1-yl) aniline




Synthesis of 4-methyl-1-(4-nitrophenyl)-1H-imidazole
To a stirred solution of 1-fluoro-4-nitrobenzene (2.0 g, 14.18 mmol) in DMF (50 mL) under an argon atmosphere were added 4-methyl-1H-imidazole (1.16 g, 14.18 mmol) and K2CO3 (1.95 g, 14.18 mmol) at RT. The reaction mixture was stirred at 110° C. for 12 h. After consumption of the starting materials (monitored by TLC), the reaction was diluted with water (50 mL) and filtered to afford a solid which was washed with hexane and dried in vacuo to afford 4-methyl-1-(4-nitrophenyl)-1H-imidazole (1.7 g, 59%) as a brown solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.39 (s, 1H), 8.34-8.32 (m, 2H), 7.94 (d, 2H), 7.67 (s, 1H), 2.16 (s, 3H); Mass (ESI): 204 [M+1]; TLC: 100% EtOAc (Rf: 0.3).
Synthesis of 4-(4-methyl-M-imidazol-1-yl) aniline
To a stirred solution of 4-methyl-1-(4-nitrophenyl)-1H-imidazole (1.7 g, 8.37 mmol) in MeOH (50 mL) under an argon atmosphere was added 10% Pd/C (0.3 g) and stirred at RT for 16 h under H2 atmosphere (balloon pressure). The reaction was filtered through celite, washed with MeOH (15 mL), and concentrated in vacuo to afford 4-(4-methyl-1H-imidazol-1-yl) aniline (1.2 g, 83%) as a brown solid used without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.81 (s, 1H), 7.21-7.18 (m, 3H), 6.62 (d, 2H), 5.23 (br, s, 2H), 2.14 (s, 3H); Mass (ESI): 174 [M+1]; TLC: 10% MeOH:CH2Cl2 (Rf 0.4).
Example 5
Synthesis of 3-methoxy-4-(4-methyl-1H-imidazol-1-yl)aniline




Synthesis of 1-(2-Methoxy-4-nitrophenyl)-4-methyl-1H-imidazole
To a stirred solution of 2-chloro-5-nitroanisole (3 g, 16.0 mmol) in DMSO (15 mL) under an argon atmosphere were added 4-methyl imidazole (5.2 g, 64.0 mmol), KOH (1.34 g, 24.0 mmol) at RT. The reaction mixture was stirred at 80° C. for 8 h. After the completion of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) to afford the solid which was filtered and dried in vacuo to afford 1-(2-Methoxy-4-nitrophenyl)-4-methyl-1H-imidazole (3.2 g, 85%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.98-7.95 (m, 3H), 7.72-7.67 (m, 1H), 7.28 (s, 1H), 3.98 (s, 3H), 2.16 (s, 3H); TLC: 100% EtOAc (Rf: 0.3).
Synthesis of 3-methoxy-4-(4-methyl-1H-imidazol-1-yl)aniline
To a stirred solution of 1-(2-Methoxy-4-nitrophenyl)-4-methyl-1H-imidazole (3.2 g, 13.7 mmol) in MeOH (40 mL) was added Raney-Ni (510 mg) under an argon atmosphere and stirred at room temperature for 3 h under H2 atmosphere (balloon pressure). After consumption of the starting material (monitored by TLC), the reaction was filtered through celite, washed with methanol (20 mL) and the filtrate was concentrated in vacuo to afford 3-methoxy-4-(4-methyl-1H-imidazol-1-yl)aniline (1.8 g, 64%) as a yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.43 (s, 1H), 6.94 (d, 1H), 6.89 (s, 1H), 6.34 (s, 1H), 6.18 (d, 1H), 5.34 (s, 2H), 3.72 (s, 3H), 2.13 (s, 3H). TLC: 10% MeOH:DCM (Rf: 0.5).
Example 6
Synthesis of 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline




Synthesis of 4-chloro-1-(2-methoxy-4-nitrophenyl)-1H-imidazole
To a stirred solution of 1-chloro-2-methoxy-4-nitrobenzene (4 g, 39.21 mmol) in DMSO (40 mL) under an argon atmosphere were added 4-chloro-1H-imidazole (7.3 g, 39.21 mmol) and potassium hydroxide (2.2 g, 39.21 mmol) at RT. The reaction mixture was stirred at 80° C. for 20 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (600 mL), filtered, washed with water (2×50 mL) and dried in vacuo to afford 4-chloro-1-(2-methoxy-4-nitrophenyl)-1H-imidazole (3.8 g, 70%) as a brown solid which was used without further purification. 1H-NMR (CDCl3, 400 MHz): δ 7.98-7.94 (m, 2H), 7.75 (s, 1H), 7.44 (d, 1H), 7.19 (s, 1H), 4.01 (s, 3H); LC-MS: 254.1 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.05 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline
To a stirred solution of 4-chloro-1-(2-methoxy-4-nitrophenyl)-1H-imidazole (3.8 g, 15.01 mmol) in EtOH (80 mL) under an argon atmosphere were added Fe powder (3.4 g, 63.24 mmol) and AcOH (40 mL) at RT. The reaction mixture was stirred at 100° C. for 30 min. After consumption of the starting material (monitored by TLC), the reaction was basified with a 1 N NaOH solution to pH 8 and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline (3 g, 89%) as an off-white solid.
1H-NMR (DMSO-d6, 400 MHz): δ 7.62 (s, 1H), 7.31 (s, 1H), 6.98 (d, 1H), 6.36 (s, 1H), 6.18 (d, 1H), 5.45 (br s, 2H), 3.69 (s, 3H); LC-MS: 224.3 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.25 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.2).
Example 7
Synthesis of 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline




Synthesis of 1-(2-fluoro-4-nitrophenyl)-4-methyl-1H-imidazole
To a stirred solution of 1, 2-difluoro-4-nitrobenzene (5 g, 31.44 mmol) in DMF (50 mL) under an argon atmosphere were added 4-methyl-1H-imidazole (3.09 g, 37.73 mmol) and potassium carbonate (5.2 g, 37.73 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 20 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite and the filtrate was concentrated in vacuo. The residue was diluted with water (200 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified through silica gel column chromatography using 30% EtOAc:hexanes to afford 1-(2-fluoro-4-nitrophenyl)-4-methyl-1H-imidazole (2.5 g, 36%) as a pale yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.19-8.15 (m, 2H), 7.87-7.86 (m, 1H), 7.59-7.55 (m, 1H), 7.07 (s, 1H), 2.32 (s, 3H); LC-MS: 222.1 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.11 min. 5 mM NH4OAc: ACN; 0.80 mL/min); TLC: EtOAc (Rf: 0.5).
Synthesis of 3-fluoro-4-(4-methyl-M-imidazol-1-yl) aniline
To a stirred solution of 1-(2-fluoro-4-nitrophenyl)-4-methyl-1H-imidazole (2.5 g, 11.31 mmol) in MeOH (30 mL) under an argon atmosphere at RT, Raney nickel (300 mg) was added and stirred under H2 atmosphere (balloon pressure) for 12 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite and the filtrate was concentrated in vacuo to afford 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (2 g) as a brown solid which was used without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.62 (s, 1H), 7.12 (t, 1H), 7.00 (s, 1H), 6.50-6.47 (m, 1H), 6.43 (d, 1H), 5.63 (s, 2H), 2.13 (s, 3H); LC-MS: 192.1 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.26 min. 5 mM NH4OAc: ACN; 0.80 mL/min) TLC: EtOAc (Rf: 0.5).
Example 8
Synthesis of 2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine




Synthesis of 2-chloro-5-methoxy-N-methylpyrimidin-4-amine
To a stirred solution of 2,4-dichloro-5-methoxypyrimidine (5 g, 28.0 mmol) in triethylamine (7.8 mL) under an argon atmosphere was added methyl amine (33% in ethanol, 3.9 mL, 42.1 mmol) in a sealed tube at RT and heated to 110° C. for 6 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water. The obtained solid was filtered, washed with cold water and dried to afford 2-chloro-5-methoxy-N-methylpyrimidin-4-amine (3.85 g, 79%) as a white crystalline solid. LC-MS: 173.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.51 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 80% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-4-(methylamino) pyrimidin-5-ol
To a stirred solution of 2-chloro-5-methoxy-N-methylpyrimidin-4-amine (6 g, 34.68 mmol) in CH2Cl2 (600 mL) under an argon atmosphere at 0° C. was added 1M BBr3 in CH2Cl2 (49.2 mL, 520 mmol). The reaction mixture was warmed to RT and stirred for 48 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with methanol (100 mL) and concentrated in vacuo. To the resultant residue a saturated sodium bicarbonate solution (100 mL) was added and extracted with EtOAc (3×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-chloro-4-(methylamino) pyrimidin-5-ol (5 g, 92%) as an off-white solid which was used without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 10.2 (brs, 1H), 7.39 (s, 1H), 7.21 (br s, 1H), 2.80 (s, 3H); LC-MS: 159.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 0.93 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 90% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-phenylethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2.0 g, 12.57 mmol) in acetonitrile (35 mL) under an argon atmosphere at 0° C. were added cesium carbonate (8.2 g, 25.14 mmol) and 2-bromo-1-phenylethan-1-one (2.75 g, 13.8 mmol) and stirred for 2 h. After completion of the reaction (monitored by TLC), the reaction was diluted with water (100 mL) and extracted with EtOAc (2×150 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20-30% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-phenylethan-1-one (2.3 g, 66%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.81 (s, 1H), 7.41-7.36 (m, 5H), 7.09 (s, 1H), 4.13 (d, 1H), 4.00 (d, 1H), 2.78 (s, 3H); LC-MS: 277.9 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.25 min. 0.05% TFA in water: ACN; 0.80 ml/min); TLC: 80% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-phenylethan-1-one (2.0 g, 7.22 mmol) in 1, 2-dichloroethane (40 mL) under an argon atmosphere were added NaBH(OAc)3 (3.06 g, 14.44 mmol) and trifluoroacetic acid (0.55 mL, 7.22 mmol) at RT and stirred for 16 h. After completion of the reaction (monitored by TLC), the mixture was diluted with a 1N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×75 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20-30% EtOAc:hexanes to afford 2-chloro-7-(phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine. 1H-NMR (CDCl3, 500 MHz): δ 7.70 (s, 1H), 7.40-7.36 (m, 3H), 7.19 (d, 2H), 4.60-4.58 (m, 1H), 4.23 (d, 1H), 4.19 (d, 1H), 3.08 (s, 3H); LC-MS: 262.3 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 4.02 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 60% EtOAc:hexanes (Rf: 0.4).
Example 9
Synthesis of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 5-difluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (400 mg, 2.51 mmol) in acetonitrile (8 mL) under an argon atmosphere at 0° C. was added cesium carbonate (1.64 g, 5.02 mmol) and 2-bromo-1-(3, 5-difluorophenyl) ethan-1-one (650 mg, 2.76 mmol) and stirred for 2 h. After completion of the reaction (monitored by TLC), the mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20-30% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 5-difluorophenyl) ethan-1-one (420 mg, 54%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.83 (s, 1H), 7.30-7.27 (m, 2H), 7.19-7.17 (m, 2H), 4.20 (d, 1H), 4.00 (d, 1H), 2.78 (s, 3H). LC-MS: 314.3 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 4.17 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 60% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 5-difluorophenyl) ethan-1-one (500 mg, 1.59 mmol) in 1, 2-dichloroethane (10 mL) under an argon atmosphere was added NaBH(OAc)3 (684 mg, 3.18 mmol) and trifluoroacetic acid (0.122 mL, 1.59 mmol) at RT and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a 1N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (370 mg, 78%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.71 (s, 1H), 6.81 (t, 1H), 6.70 (d, 2H), 4.55-4.54 (m, 1H), 4.25-4.19 (m, 2H), 3.10 (s, 3H); LC-MS: 298 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.13 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 60% EtOAc:hexanes (Rf: 0.4).
Example 10
Synthesis of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 4, 5-trifluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (630 mg, 3.95 mmol) in DMF (5 mL) under an argon atmosphere at 0° C. were added K2CO3 (1.4 g, 4.13 mmol) and 2-bromo-1-(3, 4, 5-trifluorophenyl) ethan-1-one (1.1 g, 4.3 mmol) and stirred for 2 h. After completion of the reaction (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 15% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 4, 5-trifluorophenyl) ethan-1-one (430 mg, 66%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.82 (s, 1H), 7.42-7.35 (m, 2H), 7.30 (s, 1H), 4.20 (d, 1H), 4.01 (d, 1H), 2.70 (s, 3H); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 4, 5-trifluorophenyl) ethan-1-one (480 mg, 1.45 mmol) in 1,2-dichloroethane (8 mL) under an argon atmosphere were added NaBH(OAc)3 (614 mg, 2.90 mmol) and trifluoroacetic acid (0.11 mL, 1.45 mmol) at 0° C. The reaction mixture was warmed to RT and stirred for 32 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with ether (2×10 mL) to afford 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 66%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.74 (s, 1H), 6.84-6.80 (m, 2H), 4.52-4.51 (m, 1H), 4.25-4.16 (m, 2H), 3.12 (s, 3H); LC-MS: 316.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.31 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Example 11
Synthesis of 2-chloro-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(o-tolyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (100 mg, 0.62 mmol) in CH3CN (2 mL) under an argon atmosphere at 0° C. were added cesium carbonate (409 mg, 1.25 mmol) and 2-bromo-1-(o-tolyl) ethan-1-one (120 mg, 0.69 mmol) and stirred for 2 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20-50% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(o-tolyl) ethan-1-one (120 mg, 66%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.87 (s, 1H), 7.52 (d, 1H), 7.30-7.19 (m, 3H), 7.08 (s, 1H), 4.25 (d, 1H), 3.95 (d, 1H), 2.79 (s, 3H), 2.30 (s, 3H); TLC: 60% EtOAc:hexanes (Rf: 0.4).
Synthesis of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(o-tolyl) ethan-1-one (1 g, 3.43 mmol) in 1, 2-dichloroethane (20 mL) under an argon atmosphere were added NaBH(OAc)3 (1.45 g, 6.87 mmol) and trifluoroacetic acid (0.26 mL, 3.43 mmol) at RT and stirred for 16 h. After completion of reaction (monitored by TLC), the mixture was diluted with a 1N sodium hydroxide solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 10-20% EtOAc:hexanes to afford 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (700 mg, 74%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.80 (s, 1H), 7.25-7.19 (m, 3H), 6.97 (d, 1H), 4.88-4.86 (m, 1H), 4.27-4.23 (m, 1H), 4.12-4.09 (m, 1H), 3.03 (s, 3H), 2.40 (s, 3H); LC-MS: 276.3 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 4.28 min. 0.05% Aq TFA:ACN; 0.80 ml/min); TLC: 60% EtOAc:hexanes (Rf: 0.5).
Example 12
Synthesis of 2-chloro-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1.5 g, 9.43 mmol) in CH3CN (20 mL) was added cesium carbonate (6.1 g, 18.86 mmol) and stirred for 10 min at 0° C. 2-Bromo-1-(4-fluorophenyl) ethan-1-one (2.25 g, 10.37 mmol) was added and the reaction mixture was stirred for 3 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (30 mL) and extracted with EtOAc (2×30 mL). The combined organic layers were washed with water (30 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The residue was washed with ether: n-hexane (1:1, 2×5 mL) to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluorophenyl) ethan-1-one (2 g, 71%) as an off-white solid. TLC: 40% EtOAc/hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluorophenyl) ethan-1-one (2 g, 6.75 mmol) in 1, 2-dichloroethane (20 mL) was added trifluoroacetic acid (770 mg, 6.75 mmol) and stirred for 10 min. Sodium triacetoxyborohydride (2.86 g, 13.51 mmol) was added and the reaction mixture was stirred for 72 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1N sodium hydroxide solution (30 mL) and extracted with CH2Cl2 (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20% EtOAc:hexanes to afford 2-chloro-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.8 g, 96%) as a pale yellow oil. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 7.18-7.02 (m, 4H), 4.53-4.51 (m, 1H), 4.22-4.20 (m, 1H), 4.12-4.08 (m, 1H), 3.08 (s, 3H); LC-MS: 279.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.53 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.6).
Example 13
Synthesis of 7-benzyl-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 1-bromo-3-phenylpropan-2-one
To a stirred solution of 2-phenylacetic acid (5 g, 36.76 mmol) in CH2Cl2 (50 mL) was added oxalyl chloride (4.6 g, 36.76 mmol) and DMF (2 drops) at 0° C. The reaction mixture was warmed to room temperature and continued to stir for 2 h. After consumption of acid (monitored by TLC), the mixture was concentrated in vacuo. The crude material was dissolved in ether and cooled to 0° C. A solution of CH2N2 in ether was added and the reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the mixture was concentrated in vacuo. To a stirred solution of the crude material in THF (20 mL) was added a solution of 48% aq HBr (5 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a sodium bicarbonate solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were washed successively with a sodium bicarbonate solution (50 mL) and water (50 mL). The organic layer was dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-bromo-3-phenylpropan-2-one (6 g, 76%) as a viscous oil.
1H-NMR (CDCl3, 400 MHz): δ 7.38-7.30 (m, 3H), 7.27-7.20 (m, 2H), 3.92 (s, 2H), 3.89 (s, 2H); TLC: 10% EtOAc:hexanes (Rf: 0.6).
Synthesis of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-3-phenylpropan-2-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (3 g, 18.8 mmol) in acetonitrile (30 mL) was added potassium carbonate (12.2 g, 37.60 mmol) followed by 1-bromo-3-phenylpropan-2-one (4.4 g 20.70 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with ice cold water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was triturated with n-hexane:CH2Cl2 (1:1, 2×50 mL) to afford 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-3-phenylpropan-2-one (3 g, 55%) as a pale brown solid. 1H-NMR (CDCl3, 500 MHz): δ 7.70 (s, 1H), 7.39-7.30 (m, 3H), 7.29-7.27 (m, 2H), 4.02 (d, 1H), 2.62 (d, 1H), 3.21 (d, 1H), 3.19 (s, 3H), 2.96 (d, 1H); LC-MS: 291.9 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.37 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.8).
Synthesis of 7-benzyl-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-3-phenylpropan-2-one (3 g, 10.3 mmol) in 1, 2-dichloroethane (30 mL) was added trifluoroacetic acid (1.1 g, 10.31 mmol) at 0° C. and stirred for 10 min. Sodium triacetoxyborohydride (4.3 g, 20.62 mmol) was added and the reaction mixture was stirred for 48 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20% EtOAc:hexanes to afford 7-benzyl-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.6 g, 57%) as a white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.70 (s, 1H), 7.38-7.34 (m, 2H), 7.32-7.28 (m, 1H), 7.28 (d, 2H), 4.10 (d, 1H), 3.81 (d, 1H), 3.60-3.58 (m, 1H), 3.14 (s, 3H), 3.10-3.07 (m, 1H), 2.81-2.78 (m, 1H); LC-MS: 275.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.61 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf 0.5).
Example 14
Synthesis of 2-chloro-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (100 mg, 0.62 mmol) in CH3CN (2 mL) was added cesium carbonate (409 mg, 1.25 mmol) and 2-bromo-1-(2-(trifluoromethyl) phenyl) ethan-1-one (184 mg, 0.69 mmol) and the reaction mixture was stirred for 3 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 10% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethan-1-one (100 mg, 46%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.03 (d, 1H), 7.90 (d, 1H), 7.89-7.79 (m, 2H), 7.69 (s, 1H), 7.48-7.40 (m, 1H), 5.55 (s, 2H), 2.83 (d, 3H); LC-MS: 345.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.41 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethan-1-one (400 mg, 1.15 mmol) in MeOH (4 mL) was added sodium borohydride (64 mg, 1.73 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 10% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethan-1-ol (250 mg, 62%) as an off-white solid. LC-MS: 347.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.30 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethan-1-ol (550 mg, 1.58 mmol) in CH2Cl2 (6 mL) was added successively triethylamine (0.26 mL, 1.90 mmol) and methane sulfonyl chloride (180 mg, 1.58 mmol) at 0° C. The reaction mixture was warmed to room temperate and stirred for 2 h. After consumption of the starting material (monitored by TLC), the mixture was filtered. The filtrate was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was recrystallized from diisopropylether (2×5 mL) to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethyl methanesulfonate (500 mg, 74%) as an off-white solid. LC-MS: 425.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.63 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethyl) phenyl) ethyl methanesulfonate (650 mg, 1.52 mmol) in DMF (6 mL) was added potassium carbonate (316 mg, 2.29 mmol). The reaction mixture was heated to 80° C. and stirred for 2 h. After consumption of the starting material (monitored by TLC), the mixture was concentrated in vacuo. The crude material was dissolved in water (50 mL) and extracted with ether (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 10% EtOAc:hexanes to afford 2-chloro-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 19%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.77-7.71 (m, 2H), 7.59-7.51 (m, 1H), 7.49-7.45 (m, 1H), 7.19 (d, 1H), 5.02-5.00 (m, 1H), 4.30-4.25 (m, 1H), 4.18-4.12 (m, 1H), 3.02 (s, 3H); LC-MS: 330.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.55 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.7).
Example 15
Synthesis of 2-chloro-7,8-dimethyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine




Synthesis of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) propan-2-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (200 mg, 1.25 mmol) in CH3CN (4 mL) was added successively 1-bromopropan-2-one (243 mg, 1.38 mmol) and cesium carbonate (815 mg, 2.50 mmol) at 0° C. and stirred for 4 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 15-20% EtOAc:hexanes to afford 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) propan-2-one (220 mg, 82%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.70 (s, 1H), 6.41 (s, 1H), 4.01 (d, 1H), 3.89 (d, 1H), 3.00 (s, 3H), 1.38 (s, 3H); LC-MS: 216 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.18 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 60% EtOAc:hexanes (Rf: 0.2).
Synthesis of 2-chloro-7,8-dimethyl-7,8-dihydro-6H-pyrimido[5,4-b] [1,4]oxazine
To a stirred solution of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) propan-2-one (200 mg, 0.93 mmol) in 1, 2-dichloroethane (4 mL) was added sodium triacetoxyborohydride (395 mg, 1.86 mmol) followed by trifluoroacetic acid (0.07 mL, 0.93 mmol) and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 10-15% EtOAc:hexanes to afford 2-chloro-7,8-dimethyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (110 mg, 59%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.63 (s, 1H), 4.01 (s, 2H), 3.61-3.58 (m, 1H), 3.14 (s, 3H), 1.31 (d, 3H); LC-MS: 200 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.49 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 60% EtOAc:hexanes (Rf: 0.4).
Example 16
Synthesis of 2-chloro-7-(4-fluoro-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-methylphenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (100 mg, 0.62 mmol) in CH3CN (2 mL) was added cesium carbonate (409 mg, 1.25 mmol) followed by 2-bromo-1-(4-fluoro-2-methylphenyl) ethan-1-one (159 mg, 0.69 mmol) and stirred for 3 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-methylphenyl) ethan-1-one (120 mg, 62%) as an off-white solid. LC-MS: 309.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.35 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-chloro-7-(4-fluoro-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-methylphenyl) ethan-1-one (150 mg, 0.48 mmol) in 1, 2-dichloroethane (2 mL) was added sodium triacetoxyborohydride (205 mg, 0.97 mmol) followed by trifluoroacetic acid (0.1 mL, 0.48 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with 1N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-chloro-7-(4-fluoro-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine LC-MS: 294 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.31 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Example 17
Synthesis of 7-chloro-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazine




Synthesis of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-4, 4, 4-trifluorobutan-2-ol
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (200 mg, 1.25 mmol) in DMF (5 mL) was added cesium carbonate (810 mg, 0.50 mmol) followed by 2-(2, 2, 2-trifluoroethyl) oxirane (160 mg, 1.25 mmol). The reaction mixture was heated to 50° C. and stirred for 6 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20-30% EtOAc:hexanes to afford 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-4, 4, 4-trifluorobutan-2-ol (220 mg, 62%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.53 (s, 1H), 5.68 (br s, 1H), 4.43-4.39 (m, 1H), 4.02-3.99 (m, 2H), 3.04 (s, 3H), 2.90 (br s, 1H), 2.54-2.38 (m, 2H); LC-MS: 285.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.63 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 20% EtOAc:hexanes (Rf: 0.6).
Synthesis of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-4, 4, 4-trifluorobutan-2-one
To a stirred solution of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-4, 4, 4-trifluorobutan-2-ol (400 mg, 1.40 mmol) in CH2Cl2 (5 mL) was added Dess-Martin Periodinane (893 mg, 2.10 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 6 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were washed with a sodium thoisulfate solution (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 30% EtOAc:hexanes to afford 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-4, 4, 4-trifluorobutan-2-one (220 mg, 55%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 4.31 (d, 1H), 4.00 (d, 1H), 3.18 (s, 3H), 2.78-2.63 (m, 2H); LC-MS: 284.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.60 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.4).
Synthesis of 7-chloro-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazine
To a stirred solution of 1-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-4, 4, 4-trifluorobutan-2-one (200 mg, 0.70 mmol) in 1, 2-dichloroethane (4 mL) was added sodium triacetoxyborohydride (300 mg, 1.41 mmol) followed by trifluoroacetic acid (80 mg, 0.70 mmol) at and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a 1N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 15-20% EtOAc:hexanes to afford 7-chloro-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazine (90 mg, 48%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.72 (s, 1H), 4.32 (d, 1H), 4.02 (d, 1H), 3.83-3.79 (m, 1H), 3.21 (s, 3H), 2.60-2.40 (m, 2H); LC-MS: 268 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.77 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Example 18
Synthesis of 2-chloro-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethoxy) phenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (300 mg, 1.88 mmol) in CH3CN (10 mL) was added cesium carbonate (1.22 g, 0.37 mmol) followed by 2-bromo-1-(2-(trifluoromethoxy) phenyl) ethan-1-one (580 mg, 0.20 mmol) at 0° C. and stirred for 1 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 10% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethoxy) phenyl) ethan-1-one (350 mg, 51%) as an off white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.88 (s, 1H), 7.77 (d, 1H), 7.58 (d, 1H), 7.46 (t, 1H), 7.41 (d, 1H), 7.50 (s, 1H), 4.21 (d, 1H), 4.11 (d, 1H), 2.79 (s, 3H); LC-MS: 362.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.25 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 40% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-chloro-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-(trifluoromethoxy) phenyl) ethan-1-one (350 mg, 0.96 mmol) in 1,2-dichloroethane (10 mL) was added sodium triacetoxyborohydride (400 mg, 1.93 mmol) followed by trifluoroacetic acid (0.1 mL, 0.96 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 24 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with 1N sodium hydroxide (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was triturated with EtOAc (2×10 mL) to afford 2-chloro-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (220 mg, 66%) as an off white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.71 (s, 1H), 7.45-7.30 (m, 3H), 7.08-7.03 (m, 1H), 5.00 (s, 1H), 4.24 (s, 2H), 3.11 (s, 3H); LC-MS: 346.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.51 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Example 19
Synthesis of 2-chloro-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(tetrahydro-2H-pyran-4-yl) ethan-1-one
To a stirred solution of tetrahydro-2H-pyran-4-carboxylic acid (1.5 g, 0.01 mmol) in CH2Cl2 (10 mL) was added oxalyl chloride (1.6 g, 0.01 mmol) and DMF (1 drop) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of acid (monitored by TLC), the mixture was concentrated in vacuo. The crude material was dissolved in ether and cooled to −10° C. A solution of CH2N2 in ether (20 mL) was added and the reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was concentrated in vacuo. To a stirred solution of the crude material in CH2Cl2 (20 mL) was added a solution of 48% aq HBr (5 mL) at −10° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were washed successively with a sodium bicarbonate solution (20 mL) and water (20 mL). The organic layer was dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-bromo-1-(tetrahydro-2H-pyran-4-yl) ethan-1-one (2 g) as a yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 4.49 (s, 2H), 3.83 (d, 2H), 3.33 (t, 2H), 2.90-2.80 (m, 1H), 1.80-1.70 (m, 2H), 1.57-1.44 (m, 2H); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl)oxy)-1-(tetrahydro-2H-pyran-4-yl) ethan-1-one
To a stirred solution of the 2-chloro-4-(methylamino)pyrimidin-5-ol (3 g, 18.8 mmol) in CH3CN (60 mL) was added cesium carbonate (12.2 g, 37.70 mmol) followed by 2-bromo-1-(tetrahydro-2H-pyran-4-yl) ethan-1-one (3.9 g 18.8 mmol) at 0° C. and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(tetrahydro-2H-pyran-4-yl) ethan-1-one (2.5 g) as a yellow solid and used without further purification. LC-MS: 286.1 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(tetrahydro-2H-pyran-4-yl) ethan-1-one (2.5 g, 8.70 mmol) in 1, 2-dichloroethane (50 mL) was added trifluoroacetic acid (1 mL) followed by sodium triacetoxyborohydride (3.7 g, 17.50 mmol) and stirred for 48 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with 1N sodium hydroxide (50 mL) (pH>9) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20-30% EtOAc:hexanes to afford 2-chloro-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (2 g, 86%) as a pale yellow solid. LC-MS: 270.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.10 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; TLC: 50% EtOAc:hexanes (Rf: 0.3).
Example 20
Synthesis of 7-(2-chlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chlorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (4 g, 25.15 mmol) in CH3CN (100 mL) was added cesium carbonate (16.25 g, 50.31 mmol) followed by 2-bromo-1-(2-chlorophenyl) ethan-1-one (12 g, 37.7 mmol) at 0° C. and stirred for 30 min. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 6% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chlorophenyl) ethan-1-one (4.3 g, 55%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.95-7.88 (m, 2H), 7.59-7.41 (m, 3H), 7.38 (s, 1H), 4.37 (d, 1H), 4.05 (d, 1H), 2.78 (s, 3H); TLC: 20% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-chloro-7-(2-chlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chlorophenyl) ethan-1-one (4.3 g, 13.78 mmol) in 1, 2-dichloroethane (100 mL) was added sodium triacetoxyborohydride (6.1 g, 28.94 mmol) followed by trifluoroacetic acid (1.1 mL, 13.78 mmol) and stirred for 36 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 5% sodium bicarbonate solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 12% EtOAc:hexanes to afford 2-chloro-7-(2-chlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.8 g, 45%) as an off white solid.
1H-NMR (DMSO-d6, 500 MHz): δ 7.77 (s, 1H), 7.55 (d, 1H), 7.40 (t, 1H), 7.36 (t, 1H), 6.98 (d, 1H), 5.23 (s, 1H), 4.34 (s, 2H), 3.01 (s, 3H); LC-MS: 296.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.30 min. 0.05% Aq TFA: ACN; 0.80 ml/min); TLC: 20% EtOAc:hexanes (Rf: 0.7).
Example 21
Synthesis of (S)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine




Synthesis of 2,4-Dichloropyrimidin-5-ol
To a solution of 2,4-dichloro-5-methoxypyrimidine (5.30 g, 29.6 mmol) in 1,2-dichloroethane (75 mL) at 0° C. was slowly added BBr3 (14 mL, 148 mmol). The reaction mixture was heated to 80° C. for 16 h and monitored by LC/MS until completion of the reaction. The reaction mixture was cooled to 0° C. and basified with a 1N NaOH solution. The mixture was stirred for 1 h at room temperature and then acidified with NH4Cl. The pH was adjusted between pH 6-7 using AcOH. The layers were separated and the aqueous layer was extracted 3 times with ethyl acetate. The combined organic extracts were dried over Na2SO4, filtered and concentrated in vacuo. The crude material was triturated with DCM:hexanes and filtered to afford pure 2,4-dichloropyrimidin-5-ol (2.03 g, 73%) as a solid. 1H NMR (CDCl3, 400 MHz): δ 8.35 (s, 1H), 5.73 (s, 1H); LRMS (ESpos) calcd for C4H2Cl2N2O [M+H]+: 164.95. found: 165.13.




Synthesis of 2,4-dichloro-5-(4-methoxybenzyloxy)pyrimidine
To a solution of 2,4-dichloropyrimidin-5-ol (3.58 g, 21.7 mmol), K2CO3 (7.5 g, 54.3 mmol) and NaI (325 mg, 2.2 mmol) in acetone (45 mL) at RT was added PMBCl (4.41 mL, 32.5 mmol). The reaction was stirred for 16 h. When the reaction was complete (by LC/MS), the mixture was partitioned between ethyl acetate and water. The layers were separated and the aqueous was extracted 3 times with ethyl acetate. The combined organic extracts were dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography (gradient 0-30% EtOAc/hexanes) to afford pure 2,4-dichloro-5-(4-methoxybenzyloxy)pyrimidine (4.48 g, 72%) as a white solid. 1H NMR (CDCl3, 400 MHz): δ 8.18 (s, 1H), 7.34 (d, J=8.8 Hz, 2H), 6.93 (d, J=8.7 Hz, 2H), 5.17 (s, 2H), 3.82 (s, 3H).




Synthesis of (S)-2-(methylamino)-2-phenylethanol
To a dry flask under a N2 atmosphere was added LAH (956 mg, 25.2 mmol), followed by THF (42 mL) and (S)-tert-butyl 2-hydroxy-1-phenylethylcarbamate (3.0 g, 12.6 mmol). The reaction mixture was heated to reflux for 16 h. When the reaction was complete (by LC/MS), a 10% NaOH aqueous solution was added slowly at 0° C. until no gas evolution was observed. The reaction mixture was stirred at RT for 15 minutes and Na2SO4 was added. The reaction mixture was stirred vigorously for 15 min, filtered and washed with THF. The filtrate was concentrated in vacuo to afford (S)-2-(methylamino)-2-phenylethanol (1.91 g) as a light yellow gum which solidified upon standing. 1H NMR (CDCl3, 400 MHz): δ 7.38-7.33 (m, 2H), 7.31-7.26 (m, 3H), 3.72 (dd, J=10.4, 4.4 Hz, 1H), 3.65 (dd, J=8.3, 4.4 Hz, 1H), 3.55 (dd, J=10.4, 8.3 Hz, 1H), 2.35 (s, 3H).




Synthesis of (S)-2-((2-chloro-5-(4-methoxybenzyloxy)pyrimidin-4-yl)(methyl)amino)-2-phenylethanol
To a mixture of 2,4-dichloro-5-(4-methoxybenzyloxy)pyrimidine (2.04 g, 7.15 mmol) and (S)-2-(methylamino)-2-phenylethanol (1.91 g, 7.49 mmol) in 2-methyl tetrahydrofuran (18 mL) was added triethylamine (2.5 mL, 17.9 mmol). The reaction mixture was stirred at reflux for 16 h. When the reaction was complete (by LC/MS), the mixture was diluted with ethyl acetate. The solution was washed twice with water, brine, dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography (gradient 10-80% EtOAc:hexanes) to afford of (S)-2-((2-chloro-5-(4-methoxybenzyloxy)pyrimidin-4-yl)(methyl)amino)-2-phenylethanol (2.14 g, 75%) as a yellow gummy solid. 1H NMR (CDCl3, 400 MHz): δ7.80 (s, 1H), 7.35-7.27 (m, 3H), 7.22 (dd, J=14.3, 7.9 Hz, 4H), 6.88-6.84 (m, 2H), 6.09 (dd, J=8.9, 5.6 Hz, 1H), 4.96 (s, J=11.1 Hz, 2H), 4.22-4.15 (m, 2H), 3.80 (s, 3H), 2.93 (s, 3H), 2.15 (s, 1H); LRMS (ESpos) calcd for C21H22ClN3O3 [M+H]+: 400.13. found: 400.53.




Synthesis of (S)-2-chloro-4-((2-hydroxy-1-phenylethyl)(methyl)amino)pyrimidin-5-ol
To a mixture of (S)-2-(2-chloro-5-(4-methoxybenzyloxy)pyrimidin-4-yl)(methyl)amino)-2-phenylethanol (2.14 g, 5.35 mmol) at 0° C. in DCM (35 mL) was added trifluoroacetic acid (15 mL). When the reaction was completed (by LC/MS), the reaction was concentrated to dryness and co-evaporated several times with toluene. The crude material was partitioned between ethyl acetate and a sodium bicarbonate solution. The layers were separated and the aqueous layer was extracted with ethyl acetate twice. The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column chromatography (gradient 0-10% MeOH:DCM) to afford (S)-2-chloro-4-((2-hydroxy-1-phenylethyl)(methyl)amino)pyrimidin-5-ol as a white foam (1.19 g, 80%).
1H NMR (CDCl3, 400 MHz): δ 7.83 (s, 1H), 7.33 (dq, J=14.2, 7.0 Hz, 4H), 7.11 (d, J=7.1 Hz, 2H), 5.71 (d, J=10.9 Hz, 1H), 4.36 (t, J=10.7 Hz, 1H), 4.27 (dd, J=10.7, 3.8 Hz, 1H), 3.42 (s, 1H), 2.72 (s, 3H); LRMS (ESpos) calcd for C13H14ClN3O2 [M+H]+: 280.08. found: 280.46.




Synthesis of (S)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b] [1,4] oxazine
To a mixture of (S)-2-chloro-4-((2-hydroxy-1-phenylethyl)(methyl)amino)pyrimidin-5-ol (600 mg, 2.14 mmol) and triphenylphosphine (616 mg, 2.35 mmol) at 0° C. in DCM (11 mL) was added DIAD (0.46 mL, 2.35 mmol) drop-wise. The reaction was shown to be completed after 30 min (by LC/MS). The mixture was concentrated to dryness and purified by silica gel column chromatography (gradient 0-70% methyl tert-butylether (MTBE):hexanes) to afford (S)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (0.2 g, 36%) as a colourless oil. 1H NMR (CDCl3, 400 MHz): δ 7.71 (s, 1H), 7.41-7.34 (m, 3H), 7.17 (dd, J=7.7, 1.6 Hz, 2H), 4.57 (t, J=3.6 Hz, 1H), 4.27 (dd, J=11.2, 3.3 Hz, 1H), 4.18 (dd, J=11.2, 4.0 Hz, 1H), 3.08 (s, 3H); LRMS (ESpos) calcd for C13H12ClN3O [M+H]+: 262.07. found: 262.42.
Example 21A
Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine
To a mixture of (S)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (100 mg, 0.382 mmol), K3PO4 (202 mg, 0.955 mmol) and 3-methoxy-4-(4-methyl-1H-imidazol-1-yl)aniline (85 mg, 0.420 mmol) under N2 in degassed dioxane (1.9 mL) at RT was added a 15 min premixed solution of Xantphos (44.2 mg, 0.076 mmol) and Pd(OAc)2 (8.5 mg, 0.038 mmol) in dioxane at RT. The reaction mixture was heated to 110° C. and stirred for 16 h. When the reaction was complete (by LC/MS), the mixture was diluted with ethyl acetate, washed successively with water, brine, dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography (100% Ethyl Acetate, then gradient 0-10% MeOH:EtOAc) followed by C18 column chromatography (gradient 5-90% MeCN+0.1% HCOOH:H2O) to afford (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine (36.0 mg, 22%) as a solid. HPLC analysis on a chiral stationary phase (ChiralPak OD 250×4.6 mm, 40% (iPrOH+0.1% Et2NH) in (hexane+0.1% Et2NH), 1.0 mLmin−1, DAD 254 nm) tr=8.73 min. 1H NMR (CDCl3, 400 MHz): δ 7.69 (d, J=2.2 Hz, 1H), 7.68 (s, 1H), 7.61 (d, J=1.2 Hz, 1H), 7.42-7.33 (m, 3H), 7.24-7.20 (m, 2H), 7.13 (d, J=8.5 Hz, 1H), 7.08-7.01 (m, 2H), 6.86 (s, 1H), 4.56 (t, J=3.6 Hz, 1H), 4.26 (dd, J=11.1, 3.3 Hz, 1H), 4.15 (dd, J=11.1, 4.0 Hz, 1H), 3.84 (s, 3H), 3.11 (s, 3H), 2.29 (d, J=0.8 Hz, 3H); LRMS (ESpos) calcd for C24H24N6O2 [M+H]+: 429.20. found: 429.57.
Example 21B
Synthesis of (S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine
To a mixture of (S)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (85 mg, 0.325 mmol), K3PO4 (172.3 mg, 0.818 mmol) and 3-methoxy-4-(2-methylpyridin-4-yl)aniline (76.4 mg, 0.357 mmol) under N2 in degassed dioxane (1.1 mL) at RT was added a premixed solution of Xantphos (37.6 mg, 0.065 mmol) and Pd(OAc)2 (7.2 mg, 0.032 mmol) in dioxane at RT. The reaction mixture was heated to 110° C. and stirred for 16 h. When the reaction was complete (by LC/MS), the mixture was diluted with ethyl acetate, washed successively with water, brine, dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography (100% EtOAc, then gradient 0-10% MeOH:EtOAc) then C18 column chromatography (gradient 5-90% MeCN+0.1% HCOOH:H2O) to afford (S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine (36.0 mg, 25%) as a solid. HPLC analysis on a chiral stationary phase (ChiralPak AD 250×4.6 mm, 40% (iPrOH+0.1% Et2NH) in (hexane+0.1% Et2NH), 1.0 mLmin−1, DAD 254 nm) tr=3.78 min. 1H NMR (CDCl3, 400 MHz): δ 8.47 (d, J=5.2 Hz, 1H), 7.67 (s, 1H), 7.64 (d, J=2.0 Hz, 1H), 7.43-7.33 (m, 5H), 7.31 (d, J=5.2 Hz, 1H), 7.28 (s, J=6.8 Hz, 1H), 7.24-7.20 (m, 2H), 7.12 (dd, J=8.3, 2.0 Hz, 1H), 4.57 (t, J=3.5 Hz, 1H), 4.26 (dd, J=11.1, 3.3 Hz, 1H), 4.15 (dd, J=11.1, 3.9 Hz, 1H), 3.86 (s, 3H), 3.13 (s, 3H), 2.59 (s, 3H); LRMS (ESpos) calcd for C26H25N5O2 [M+H]+: 440.20. found: 440.60.
Example 22
Synthesis of (R)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine




Synthesis of (R)-2-(methylamino)-2-phenylethanol
To a dry flask under nitrogen was charged with LAH (943 mg, 24.9 mmol), was added tetrahydrofuran (THF) (40 mL) and (R)-tert-butyl 2-hydroxy-1-phenylethylcarbamate (2.95 g, 12.4 mmol). The reaction mixture was heated to reflux for 16 h. When the reaction was shown to be complete by LC/MS, a 10% NaOH aqueous solution was added slowly at 0° C. until no more gas evolution was observed. The reaction mixture was stirred at RT for 15 minutes and Na2SO4 was added. The reaction was vigorously stirred for 15 min, filtered and washed with THF. The volatile components were evaporated to afford (R)-2-(methylamino)-2-phenylethanol as a light yellow gum which solidifies upon standing (1.85 g, 98%). 1H NMR (CDCl3, 400 MHz): δ 7.38-7.33 (m, 2H), 7.31-7.26 (m, 3H), 3.72 (dd, J=10.4, 4.4 Hz, 1H), 3.65 (dd, J=8.3, 4.4 Hz, 1H), 3.55 (dd, J=10.4, 8.3 Hz, 1H), 2.35 (s, 3H).




Synthesis of (R)-2-((2-chloro-5-(4-methoxybenzyloxy)pyrimidin-4-yl)(methyl)amino)-2-phenylethanol
To a mixture of 2,4-dichloro-5-(4-methoxybenzyloxy)pyrimidine (1.2 g, 4.21 mmol) and (R)-2-(methylamino)-2-phenylethanol (0.67 g, 4.42 mmol) in 2-methyl tetrahydrofuran (10 mL) was added triethylamine (1.5 mL, 10.5 mmol). The reaction mixture was stirred at reflux for 16 h. The reaction was diluted with ethyl acetate, washed twice with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography (gradient 10-80% EtOAc:hexanes) to afford (R)-2-((2-chloro-5-(4-methoxybenzyloxy)pyrimidin-4-yl)(methyl)amino)-2-phenylethanol as a yellow gummy solid (852 mg, 51%). 1H NMR (CDCl3, 400 MHz): δ 7.80 (s, 1H), 7.35-7.27 (m, 3H), 7.22 (dd, J=14.3, 7.9 Hz, 4H), 6.88-6.84 (m, 2H), 6.09 (dd, J=8.9, 5.6 Hz, 1H), 4.96 (s, J=11.1 Hz, 2H), 4.22-4.15 (m, 2H), 3.80 (s, 3H), 2.93 (s, 3H), 2.15 (s, 1H); LRMS (ESpos) calcd for C21H22ClN3O3 [M+H]+: 400.13. found: 400.53.




Synthesis of (R)-2-chloro-4-((2-hydroxy-1-phenylethyl)(methyl)amino)pyrimidin-5-ol
To a mixture of (R)-2-((2-chloro-5-(4-methoxybenzyloxy)pyrimidin-4-yl)(methyl)amino)-2-phenylethanol (850 mg, 2.13 mmol) at 0° C. in dichloromethane (13.5 mL) was added trifluoroacetic acid (6.5 mL). When the reaction was shown to be complete by LC/MS, the mixture was concentrated to dryness and co-evaporated several times with toluene. The crude material was partitioned between ethyl acetate and a NaHCO3 solution. The layers were separated and the aqueous layer was extracted with ethyl acetate twice. The combined organic layers were dried over Na2SO4, filtered and concentrated in vacuo. The residue was triturated in DCM:hexanes mixture, filtered and dried in vacuo to afford (R)-2-chloro-4-((2-hydroxy-1-phenylethyl)(methyl)amino)pyrimidin-5-ol as a white solid (327 mg, 55%). 1H NMR (CDCl3, 400 MHz): δ 7.83 (s, 1H), 7.33 (dq, J=14.2, 7.0 Hz, 4H), 7.11 (d, J=7.1 Hz, 2H), 5.71 (d, J=10.9 Hz, 1H), 4.36 (t, J=10.7 Hz, 1H), 4.27 (dd, J=10.7, 3.8 Hz, 1H), 3.42 (s, 1H), 2.72 (s, 3H); LRMS (ESpos) calcd for C13H14ClN3O2 [M+H]+: 280.08. found: 280.46.




Synthesis of (R)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine
To a mixture of (R)-2-chloro-4-((2-hydroxy-1-phenylethyl)(methyl)amino)pyrimidin-5-ol (325 mg, 1.16 mmol) and triphenylphosphine (335 mg, 1.28 mmol) at 0° C. in dichloromethane (11 mL) was added DIAD (0.25 mL, 1.28 mmol) drop-wise. When the reaction was shown to be complete by LC/MS, the mixture was concentrated to dryness. The crude material was purified by silica gel column chromatography (gradient 0-70% methyl tert-butylether (MTBE):hexanes) to afford (R)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine as a colourless oil (0.13 g, 43%). 1H NMR (CDCl3, 400 MHz): δ 7.71 (s, 1H), 7.41-7.34 (m, 3H), 7.17 (dd, J=7.7, 1.6 Hz, 2H), 4.57 (t, J=3.6 Hz, 1H), 4.27 (dd, J=11.2, 3.3 Hz, 1H), 4.18 (dd, J=11.2, 4.0 Hz, 1H), 3.08 (s, 3H); LRMS (ESpos) calcd for C13H12ClN3O [M+H]+: 262.07. found: 262.42.
Example 22A
Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine




Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine
To a mixture of (R)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (99 mg, 0.38 mmol), K3PO4 (201 mg, 0.955 mmol) and 3-methoxy-4-(4-methyl-1H-imidazol-1-yl)aniline (85 mg, 0.420 mmol) under N2 in degassed dioxane (3.8 mL) was added a premixed solution of Xantphos (44.0 mg, 0.076 mmol) and Pd(OAc)2 (8.5 mg, 0.038 mmol) in dioxane. The reaction mixture was heated to 110° C. and stirred for 16 h. When the reaction was shown to be complete by LC/MS, the mixture was diluted with ethyl acetate, washed successively with water, brine, dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography (100% EtOAc, then gradient 0-10% MeOH:EtOAc) then C18 column chromatography (gradient 5-90% MeCN+0.1% HCOOH:H2O) to afford (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine as a solid (46.0 mg, 28%). HPLC analysis on a chiral stationary phase (ChiralPak OD 250×4.6 mm, 40% (iPrOH+0.1% Et2NH) in (hexane+0.1% Et2NH), 1.0 mLmin−1, DAD 254 nm) tr=14.60 min. 1H NMR (CDCl3, 400 MHz): δ 7.69 (d, J=2.2 Hz, 1H), 7.68 (s, 1H), 7.61 (d, J=1.2 Hz, 1H), 7.42-7.33 (m, 3H), 7.24-7.20 (m, 2H), 7.13 (d, J=8.5 Hz, 1H), 7.08-7.01 (m, 2H), 6.86 (s, 1H), 4.56 (t, J=3.6 Hz, 1H), 4.26 (dd, J=11.1, 3.3 Hz, 1H), 4.15 (dd, J=11.1, 4.0 Hz, 1H), 3.84 (s, 3H), 3.11 (s, 3H), 2.29 (d, J=0.8 Hz, 3H); LRMS (ESpos) calcd for C24H24N6O2[M+H]+: 429.20. found: 429.57.
Example 22B
Synthesis of (R)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine




Synthesis of (R)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine
To a mixture of (R)-2-chloro-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (28 mg, 0.325 mmol), K3PO4 (45.4 mg, 0.214 mmol) and 3-methoxy-4-(2-methylpyridin-4-yl)aniline (25.2 mg, 0.118 mmol) under N2 in degassed dioxane (1.1 mL) was added a premixed solution of Xantphos (12.4 mg, 0.02 mmol) and Pd(OAc)2 (2.4 mg, 0.032 mmol) in dioxane. The reaction mixture was heated to 110° C. and stirred for 16 h. When the reaction was shown to be completed by LC/MS, the mixture was diluted with ethyl acetate, washed successively with water, brine, dried over Na2SO4, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography (100% EtOAc, then gradient 0-10% MeOH:EtOAc) and C18 column chromatography (gradient 5-90% MeCN+0.1% HCOOH:H2O) to afford (R)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine as a solid (11.4 mg, 24%). HPLC analysis on a chiral stationary phase (ChiralPak AD 250×4.6 mm, 40% (iPrOH+0.1% Et2NH) in (hexane+0.1% Et2NH), 1.0 mLmin−1, DAD 254 nm) tr=9.70 min. 1H NMR (CDCl3, 400 MHz): δ 8.47 (d, J=5.2 Hz, 1H), 7.67 (s, 1H), 7.64 (d, J=2.0 Hz, 1H), 7.43-7.33 (m, 5H), 7.31 (d, J=5.2 Hz, 1H), 7.28 (s, J=6.8 Hz, 1H), 7.24-7.20 (m, 2H), 7.12 (dd, J=8.3, 2.0 Hz, 1H), 4.57 (t, J=3.5 Hz, 1H), 4.26 (dd, J=11.1, 3.3 Hz, 1H), 4.15 (dd, J=11.1, 3.9 Hz, 1H), 3.86 (s, 3H), 3.13 (s, 3H), 2.59 (s, 3H); LRMS (ESpos) calcd for C26H25N5O2 [M+H]+: 440.20. found: 440.50.
Example 23
Synthesis of 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (7 mg, 0.008 mmol) and Xantphos (14 mg, 0.02 mmol) in 1, 4-dioxane (0.25 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.16 mmol), 4-(4-methyl-1H-imidazol-1-yl) aniline (58 mg, 0.33 mmol) and cesium carbonate (76 mg, 0.02 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (10 mL) and extracted with CH2Cl2 (2×10 mL). The combined organic extracts were washed with brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC [acentis-C18 (250×21 2 mm×10 um) (30 mg loading; CH3CN; 0.05% Aq TFA (0.01/95, 2/95, 3/80, 15/65, 15.1/0, 25/0, 35/95) as the mobile phase with a Flow rate=15 mL/min] to afford 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 27%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.79 (d, 2H), 7.60 (s, 1H), 7.40 (d, 2H), 7.19 (s, 1H), 6.91-6.80 (m, 3H), 4.73 (s, 1H), 4.20 (s, 2H), 3.13 (s, 3H), 2.21 (s, 3H); Mass (ESI): 435.6 [M+1]; LC-MS: 435.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.76 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.55 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 10% MeOH:CH2Cl2 (Rf: 0.3).
Racemic compound of Example 23 was separated using a Chiralpak IA (250×20 mm, 5 μm (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (75:25) as the mobile phase) to provide the compound of Example 23A (Fraction I (−)) and the compound of Example 23B (Fraction II (+)).
Example 23A
Synthesis of (−)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 23A was produced as described in Example 23. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.79 (d, 2H), 7.59 (s, 1H), 7.39 (d, 2H), 7.19 (s, 1H), 6.94-6.82 (m, 3H), 4.75 (s, 1H), 4.20 (d, 2H), 3.15 (s, 3H), 2.23 (s, 3H); Mass (ESI): 435.4 [M+1]; LC-MS: 434.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.32 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.50 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=18.54 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −137.37 (c=0.25, DCM).
Example 23B
Synthesis of (+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 23B was produced as described in Example 23. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.79 (d, 2H), 7.59 (s, 1H), 7.39 (d, 2H), 7.19 (s, 1H), 6.94-6.82 (m, 3H), 4.75 (s, 1H), 4.20 (d, 2H), 3.15 (s, 3H), 2.23 (s, 3H); Mass (ESI): 435.4 [M+1]; LC-MS: 434.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.33 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.51 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=21.64 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +121.55 (c=0.25, DCM).
Example 24
Synthesis of 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.19 mmol) in isopropanol (0.5 mL) under an argon atmosphere were added 4-(2-methylpyridin-4-yl) aniline (70 mg, 0.38 mmol) and concentrated hydrochloric acid (catalytic amount) at room temperature. The reaction mixture was stirred at 130° C. for 16 h in a sealed tube. After completion of reaction (monitored by TLC), the reaction was diluted with a saturated sodium bicarbonate solution (30 mL) and extracted with EtOAc (3×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (15 mg, 19%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.37-8.36 (m, 1H), 7.81 (d, 2H), 7.69 (d, 2H), 7.58-7.56 (m, 2H), 7.50-7.49 (m, 1H), 7.40-7.37 (m, 2H), 7.34-7.31 (m, 1H), 7.25 (d, 2H), 4.71-4.69 (m, 1H), 4.27-4.16 (m, 2H), 3.13 (s, 3H), 2.57 (s, 3H); Mass (ESI): 410.4 [M+1]; LC-MS: 410.4 (M+1); (column; X select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% TFA (Aq); 0.50 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Racemic compound of Example 24 was separated using a Chiralpak IA column (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (20:80) (A:B: 80:20) to provide the compound of Example 24A (Fraction I (+)) and the compound of Example 24B (Fraction II (−)).
Example 24A
Synthesis of (+)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 24A was produced as described in Example 24. Analytical data for Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.38 (d, 1H), 7.80 (d, 2H), 7.68 (d, 2H), 7.56 (s, 2H), 7.48 (d, 1H), 7.40-7.35 (m, 3H), 7.24 (d, 2H), 4.70 (s, 1H), 4.26-4.17 (m, 2H), 3.14 (s, 3H), 2.60 (s, 3H); Mass (ESI): 410.6 [M+1]; LC-MS: 410.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.80 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=16.14 min (Chiralpak IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) DCM:MeOH (50:50); flow Rate: 1.0 mL/min); Optical rotation [α]D19.96: +206.38 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 24B
Synthesis of (−)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 24B was produced as described in Example 24. Analytical data for Fraction II (−): 1H NMR (CD3OD, 400 MHz): δ 8.38 (d, 1H), 7.82 (d, 2H), 7.70 (d, 2H), 7.54 (s, 2H), 7.50 (d, 1H), 7.36 (d, 2H), 7.32 (d, 1H), 7.24 (d, 2H), 4.70 (s, 1H), 4.26-4.16 (d, 2H), 3.12 (s, 3H), 2.50 (s, 3H). Mass (ESI): 410.6 [M+1]; LC-MS: 410.5 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.80 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=17.89 min (Chiralpak IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) DCM:MeOH (50:50); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: −195.32 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 25
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.38 mmol) in isopropanol (1 mL) under an argon atmosphere were added 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (146 mg, 0.76 mmol) and concentrated hydrochloric acid (catalytic amount) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was basified with a saturated sodium bicarbonate solution (20 mL) and extracted with 10% MeOH: CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 5% MeOH: CH2Cl2 to afford 85 mgs further purified by preparative HPLC [kromasil-C18 (250×21.2 mm×10 um) (65 mg loading; CH3CN; 0.05% Aq TFA (0.01/90, 15/50, 25/10, 35/10) as the mobile phase with a Flow rate=15 mL/min] to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (45 mg, 28%) as a yellow solid. 1H-NMR (CD3OD, 400 MHz): δ 9.03 (s, 1H), 8.05-8.02 (m, 1H), 7.62 (s, 1H), 7.57-7.53 (m, 3H), 7.43-7.34 (m, 3H), 7.28-7.27 (m, 2H), 4.86-4.84 (s, 1H), 4.35-4.24 (m, 2H), 3.19 (s, 3H), 2.42 (s, 3H); Mass (ESI): 417.3 [M+1]; LC-MS: 417.3 (M+1); (column; X select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.04 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7μ); RT 1.58 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Racemic compound of Example 25 was separated using a Chiralpak IA (250×20 mm, 5 μm (50 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (80:20) as the mobile phase) to provide the compound of Example 25A (Fraction I (+)) and the compound of Example 25B (Fraction II (−)).
Example 25A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 25A was produced as described in Example 25. Analytical data for Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.00-7.98 (m, 1H), 7.75 (s, 1H), 7.58 (s, 1H), 7.41-7.32 (m, 5H), 7.23 (d, 2H), 7.08 (s, 1H), 4.60-4.59 (m, 1H), 4.27-4.20 (m, 2H), 3.10 (s, 3H), 2.22 (s, 3H); (Mass (ESI): 417.7 [M+1]; LC-MS: 417.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.79 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=17.25 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane: CH2Cl2:EtOH (50:50); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +165.10 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Example 25B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 25B was produced as described in Example 25. Analytical data for Fraction II (−): 1H NMR (CD3OD, 400 MHz): δ 8.00-7.98 (m, 1H), 7.79 (s, 1H), 7.59 (s, 1H), 7.40-7.30 (m, 5H), 7.24 (d, 2H), 7.08 (s, 1H), 4.71-4.69 (m, 1H), 4.25-4.17 (m, 2H), 3.11 (s, 3H), 2.22 (s, 3H); Mass (ESI): 417.7 [M+1]; LC-MS: 417.4 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.79 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=22.95 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −151.16 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Example 26
Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.19 mmol) in isopropanol (0.5 mL) under an argon atmosphere were added 4-(4-methyl-1H-imidazol-1-yl) aniline (66 mg, 0.38 mmol) and concentrated hydrochloric acid (catalytic amount) at room temperature. The reaction mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the reaction was diluted with a saturated sodium bicarbonate solution (25 mL) and extracted with EtOAc (3×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 26%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.78 (d, 2H), 7.50 (s, 1H), 7.40-7.32 (m, 5H), 7.23-7.20 (m, 3H), 4.70-4.68 (m, 1H), 4.23-4.18 (m, 2H), 3.10 (s, 3H), 2.20 (s, 3H); Mass (ESI): 399.3 [M+1]; LC-MS: 399.3 (M+1); (column; X-select C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC: (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 7.67 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Racemic compound of Example 26 was separated using a Chiralpak IA (250×20 mm, 5 μm (30 mg loading; A) 0.1% DEA in n-hexane B) CH2Cl2:MeOH (50:50) (A:B: 75:25) to provide the compound of Example 26A (Fraction I (+)) and the compound of Example 26B (Fraction II (−)).
Example 26A
Synthesis of (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 26A was produced as described in Example 26. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 500 MHz): δ 7.96 (s, 1H), 7.80 (d, 2H), 7.58 (s, 1H), 7.46-7.36 (m, 5H), 7.24 (d, 2H), 7.20 (s, 1H), 4.70-4.68 (m, 1H), 4.23-4.18 (m, 2H), 3.14 (s, 3H), 2.22 (s, 3H); Mass (ESI): 399.4 [M+1]; LC-MS: 399.3 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.64 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC: (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 10.43 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min. Chiral HPLC: RT=15.85 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +117.84 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 26B
Synthesis of (−)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 26B was produced as described in Example 26. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 500 MHz): δ 7.92 (s, 1H), 7.80 (d, 2H), 7.58 (s, 1H), 7.44-7.32 (m, 5H), 7.24 (d, 2H), 7.20 (s, 1H), 4.70-4.68 (m, 1H), 4.23-4.18 (m, 2H), 3.14 (s, 3H), 2.24 (s, 3H); Mass (ESI): 399.4 [M+1]; LC-MS: 399.3 (M+1); (column; X-select C-18 (50×3.0 mm, 3.5 μm); RT 2.64 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC: (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 10.40 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min. Chiral HPLC: RT=19.10 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −124.14 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 27
Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.38 mmol) in isopropanol (1 mL) under an argon atmosphere were added 3-fluoro-4-(2-methylpyridin-4-yl) aniline (155 mg, 0.76 mmol) and concentrated hydrochloric acid (catalytic amount) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After completion of reaction (monitored by TLC), the mixture was diluted with water (30 mL) and extracted with EtOAc (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 0-4% MeOH: CH2Cl2 to afford 90 mgs further purified by preparative HPLC [kromasil-C18 (250×21.2 mm×10 um) (70 mg loading; CH3CN; 0.05% Aq TFA (0.01/90, 15/50, 25/10, 35/10) as the mobile phase with a Flow rate=15 mL/min] to afford N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (18 mg, 11%) as a yellow solid. 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.39 (m, 1H), 7.93-7.88 (m, 1H), 7.59 (s, 1H), 7.51-7.33 (m, 7H), 7.25 (d, 2H), 4.72-4.70 (m, 1H), 4.24-4.16 (m, 2H), 3.14 (s, 3H), 2.57 (s, 3H); Mass (ESI): 428.4 [M+1]; LC-MS: 428.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.20 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% Aq TFA; 0.50 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.1).
Racemic compound of Example 27 was separated using a Chiralpak IA (250×20 mm, 5 μm (35 mg loading; 0.1% DEA in n-hexane: EtOH (80:20) as the mobile phase to provide the compound of Example 27A (Fraction I (+)) and the compound of Example 27B (Fraction II (−)).
Example 27A
Synthesis of (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 27A was produced as described in Example 27. Analytical data for Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.90 (d, 1H), 7.60 (s, 1H), 7.50-7.33 (m, 7H), 7.28 (d, 2H), 4.70 (s, 1H), 4.22-4.17 (m, 2H), 3.12 (s, 3H), 2.60 (s, 3H); (Mass (ESI): 428.6 [M+1]; LC-MS: 428.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.90 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=13.17 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane: EtOH (75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +174.75 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 27B
Synthesis of (−)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 27B was produced as described in Example 27. Analytical data for Fraction II (−): 1H NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.90 (d, 1H), 7.60 (s, 1H), 7.50-7.32 (m, 7H), 7.28 (d, 2H), 4.70 (s, 1H), 4.22-4.17 (m, 2H), 3.12 (s, 3H), 2.60 (s, 3H); Mass (ESI): 428.6 [M+1]; LC-MS: 428.6 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.90 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=16.02 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane: EtOH (75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −170.96 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 28
Synthesis of 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.33 mmol) in isopropyl alcohol (1 mL) under an argon atmosphere were added concentrated hydrochloric acid (catalytic amount) and 4-(2-methylpyridin-4-yl) aniline (124 mg, 0.67 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 24 h in a sealed tube. After completion of the reaction (monitored by TLC), the reaction was diluted with a saturated sodium bicarbonate solution (10 mL) and extracted with EtOAc (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by silica gel column chromatography using 0-5% MeOH:CH2Cl2 to afford 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (149 mg, 18%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.38 (d, 1H), 7.82 (d, 2H), 7.70 (d, 2H), 7.60 (d, 2H), 7.48 (d, 1H), 6.96-6.89 (m, 3H), 4.78 (s, 1H), 4.21 (d, 2H), 3.19 (s, 3H), 2.60 (s, 3H); Mass (ESI): 446.4 [M+1] LC-MS: 446.5 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.25 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.66 min. ACN: water; 0.50 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Racemic compound of Example 28 was separated using a Chiralpak-ADH (250×20 mm, 5 μm (35 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as the mobile phase) to provide the compound of Example 28A (Fraction I (−)) and the compound of Example 28B (Fraction II (+)).
Example 28A
Synthesis of (−)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 28A was produced as described in Example 28. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.37 (d, 1H), 7.81 (d, 2H), 7.68 (d, 2H), 7.60 (s, 1H), 7.57 (s, 1H), 7.48 (d, 1H), 6.93-6.83 (m, 3H), 4.75-4.73 (m, 1H), 4.21 (s, 2H), 3.15 (s, 3H), 2.54 (s, 3H); Mass (ESI): 446.4 [M+1]; LC-MS: 446.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.95 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=17.95 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 70:30; flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −168.86 (c 0.25, DCM).
Example 28B
Synthesis of (+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 28B was produced as described in Example 28. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.37 (d, 1H), 7.81 (d, 2H), 7.68 (d, 2H), 7.60 (s, 1H), 7.57 (s, 1H), 7.48 (d, 1H), 6.93-6.83 (m, 3H), 4.75-4.73 (m, 1H), 4.21 (s, 2H), 3.15 (s, 3H), 2.54 (s, 3H); Mass (ESI): 446.4 [M+1]; LC-MS: 446.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=24.77 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 70:30; flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +174.17 (c 0.25, DCM).
Example 29
Synthesis of 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (4 mg, 0.004 mmol) and Xantphos (7 mg, 0.013 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol), 4-(2-methylpyridin-4-yl) aniline (107 mg, 0.58 mmol) and cesium carbonate (133 mg, 0.40 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 110° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was concentrated in vacuo. The crude material was treated with a saturated sodium carbonate solution (30 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 0-5% MeOH:CH2Cl2 to afford 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 16%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.38 (s, 1H), 7.82 (d, 2H), 7.69 (d, 2H), 7.57-7.53 (m, 2H), 7.49-7.47 (m, 1H), 7.24-7.18 (m, 3H), 7.00-6.99 (m, 1H), 5.01-4.99 (m, 1H), 4.25-4.20 (m, 1H), 4.11-4.09 (m, 1H), 3.10 (s, 3H), 2.57 (s, 3H), 2.41 (s, 3H); Mass (ESI): 424.6 [M+1]; LC-MS: 424.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 2.1×50 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% TFA (Aq); 0.50 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Racemic compound of Example 29 was separated using a Chiralpak IA (250×20 mm, 5 μm (20 mg loading; A) 0.1% DEA in n-hexane B) CH2Cl2:MeOH (50:50) (A:B: 80:20) to provide the compound of Example 29A (Fraction I (−)) and the compound of Example 29B (Fraction II (+)).
Example 29A
Synthesis of (−)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 29A was produced as described in Example 29. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 500 MHz): δ 8.38 (d, 1H), 7.84 (d, 2H), 7.72 (d, 2H), 7.58 (s, 2H), 7.50 (d, 1H), 7.28 (t, 1H), 7.24-7.25 (m, 1H), 7.18 (t, 1H), 7.02 (d, 1H), 5.04-4.98 (m, 1H), 4.24-4.16 (m, 2H), 3.12 (s, 3H), 2.58 (s, 3H), 2.42 (s, 3H); Mass (ESI): 424.4 [M+1]; LC-MS: 424.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.84 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 2.1×50 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: RT=11.92 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −202.41 (c 0.25, DCM).
Example 29B
Synthesis of (+)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 29B was produced as described in Example 29. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 500 MHz): δ 8.40 (d, 1H), 7.82 (d, 2H), 7.70 (d, 2H), 7.58-7.56 (m, 2H), 7.50 (d, 1H), 7.30-7.18 (m, 3H), 7.02 (d, 1H), 5.04-4.98 (m, 1H), 4.27-4.17 (m, 2H), 3.12 (s, 3H), 2.60 (s, 3H), 2.42 (s, 3H); Mass (ESI): 424.4 [M+1]; LC-MS: 424.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.83 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 2.1×50 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: RT=13.35 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +215.53 (c 0.25, DCM).
Example 30
Synthesis of 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (4 mg, 0.004 mmol) and Xantphos (7 mg, 0.01 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1, 4] oxazine (80 mg, 0.26 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (109 mg, 0.53 mmol) and cesium carbonate (132 mg, 0.37 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 36 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 100 mgs further purified by preparative HPLC [Chiralpak-IC (250×20 mm×5 um) (30 mg loading; 0.1% DEA in n-hexane; CH2Cl2:MeOH (50:50); (80:20) as the mobile phase with a Flow rate=15 mL/min] to afford 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (35 mg, 28%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.20 (s, 1H), 7.87-7.86 (m, 1H), 7.66-7.63 (m, 2H), 7.33-7.30 (m, 1H), 7.24-7.15 (m, 2H), 7.00 (s, 1H), 6.97-6.95 (m, 2H), 4.89 (s, 1H), 4.29-4.25 (m, 1H), 4.21-4.17 (m, 1H), 3.77 (s, 3H), 3.11 (s, 3H), 2.13 (s, 3H); Mass (ESI): 465.5 [M+1]; LC-MS: 465.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 10% MeOH:CH2Cl2 (Rf: 0.5).
Racemic compound of Example 30 was separated using a Chiralpak IC (250×20 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (80:20) as the mobile phase to provide the compound of Example 30A (Fraction I (−)) and the compound of Example 30B (Fraction II (+)).
Example 30A
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 30A was produced as described in Example 30. Analytical data for product Fraction I (−): 1H NMR (DMSO-d6, 500 MHz): δ 9.21 (s, 1H), 7.87 (s, 1H), 7.64 (d, 2H), 7.33 (d, 1H), 7.22 (t, 1H), 7.19 (d, 1H), 7.01 (s, 1H), 6.96 (d, 2H), 4.88 (s, 1H), 4.26-4.24 (m, 1H), 4.20-4.18 (m, 1H), 3.88 (s, 3H), 3.12 (s, 3H), 2.14 (s, 3H); Mass (ESI): 465.4[M+1]; LC-MS: 465.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=13.58 min (Chiralpak ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −153.31 (c 0.25, DCM).
Example 30B
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 30B was produced as described in Example 30. Analytical data for product Fraction I (+): 1H NMR (DMSO-d6, 500 MHz): δ 9.21 (s, 1H), 7.87 (s, 1H), 7.64 (d, 2H), 7.33 (d, 1H), 7.22 (t, 1H), 7.19 (d, 1H), 7.01 (s, 1H), 6.96 (d, 2H), 4.88 (s, 1H), 4.26-4.24 (m, 1H), 4.20-4.18 (m, 1H), 3.88 (s, 3H), 3.12 (s, 3H), 2.14 (s, 3H); Mass (ESI): 465.4[M+1]; LC-MS: 465.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.60 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=19.51 min (Chiralpak ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +135.88 (c 0.25, DCM).
Example 31
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (4 mg, 0.004 mmol) and Xantphos (7 mg, 0.01 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (118 mg, 0.58 mmol) and cesium carbonate (132 mg, 0.40 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 72 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2-4% MeOH: CH2Cl2 to afford 70 mgs further purified by preparative TLC using 70% EtOAc:hexanes to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (30 mg, 23%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.76 (s, 1H), 7.68 (s, 1H), 7.26-7.17 (m, 5H), 7.00-6.97 (m, 2H), 5.00-4.99 (m, 1H), 4.25-4.22 (m, 1H), 4.14-4.10 (m, 1H), 3.84 (s, 3H), 3.10 (s, 3H), 2.41 (s, 3H), 2.23 (s, 3H); Mass (ESI): 443.7 [M+1]; LC-MS: 443.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 10% MeOH:CH2Cl2 (Rf: 0.4).
Racemic compound of Example 31 was separated using a Chiralpak ADH (250×20 mm, 5 μm (40 mg loading; A) 0.1% DEA in n-hexane B) EtOH (A:B: 75:25) to provide the compound of Example 31A (Fraction I (−)) and the compound of Example 31B (Fraction II (+)).
Example 31A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 31A was produced as described in Example 31. Analytical data for product Fraction I (−): 1H NMR (CD3OD, 400 MHz): δ 7.78 (s, 1H), 7.68 (s, 1H), 7.58 (s, 1H), 7.28-7.16 (m, 5H), 6.98-6.94 (m, 2H), 5.01 (s, 1H), 4.22 (d, 1H), 4.12 (d, 1H), 3.82 (s, 3H), 3.10 (s, 3H), 2.40 (s, 3H), 2.22 (s, 3H); Mass (ESI): 443.6 [M+1]; LC-MS: 443.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=21.10 min (Chiralpak ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −188.80 (c 0.25, DCM).
Example 31B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 31B was produced as described in Example 31. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.78 (s, 1H), 7.70 (s, 1H), 7.58 (s, 1H), 7.30-7.18 (m, 5H), 7.01-6.99 (m, 2H), 5.03-5.01 (m, 1H), 4.26 (d, 1H), 4.14 (d, 1H), 3.88 (s, 3H), 3.10 (s, 3H), 2.40 (s, 3H), 2.22 (s, 3H); Mass (ESI): 443.6 [M+1]; LC-MS: 443.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=28.68 min (Chiralpak ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +203.29 (c 0.25, DCM).
Example 32
Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (4 mg, 0.004 mmol) and Xantphos (7 mg, 0.01 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (117 mg, 0.58 mmol) and cesium carbonate (132 mg, 0.40 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 36 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 1.5-2% MeOH: CH2Cl2 to afford 75 mgs further purified by preparative HPLC [Kromasil C18 (250×21.2 mm 10 um) (30 mg loading; n-hexane; CH2Cl2:MeOH (50:50); (90:10) as the mobile phase with a Flow rate=15 mL/min] to afford N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (10 mg, 8%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.39 (m, 1H), 7.93-7.89 (m, 1H), 7.60-7.58 (m, 1H), 7.51-7.42 (m, 4H), 7.26-7.16 (m, 3H), 6.99 (d, 1H), 5.01-5.00 (m, 1H), 4.26-4.22 (m, 1H), 4.15-4.11 (m, 1H), 3.10 (s, 3H), 2.57 (s, 3H), 2.42 (s, 3H); (Mass ESI): 442.6 [M+1]; LC-MS: 442.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 70% EtOAc:hexanes (Rf: 0.3).
Racemic compound of Example 32 was separated using a Chiralcel A-DH (250×4.6 mm, 5 μm (40 mg loading; A) CO2B) MeOH:EtOH (50:50) (A:B: 70:30) to provide the compound of Example 32A (Fraction I (−)) and the compound of Example 32B (Fraction II (+)).
Example 32A
Synthesis of (−)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 32A was produced as described in Example 32. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.92 (d, 1H), 7.60 (s, 1H), 7.50-7.42 (m, 4H), 7.24-7.14 (m, 3H), 7.00 (d, 1H), 5.03-5.01 (m, 1H), 4.26-4.21 (m, 1H), 4.19-4.16 (m, 1H), 3.10 (s, 3H), 2.56 (s, 3H), 2.42 (s, 3H); Mass (ESI): 442.4 [M+1]; LC-MS: 442 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.44 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=11.23 min (Chiralpak ADH (250×4.6 mm, 5 μm; mobile phase (A) CO2 (B) MeOH; EtOH (70:30); flow Rate: 3.0 mL/min); Optical rotation [α]D25.00: −162.04 (c 0.25, DCM).
Example 32B
Synthesis of (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 32B was produced as described in Example 32. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.92 (d, 1H), 7.60 (s, 1H), 7.50-7.42 (m, 4H), 7.24-7.14 (m, 3H), 7.00 (d, 1H), 5.03-5.01 (m, 1H), 4.26-4.21 (m, 1H), 4.19-4.16 (m, 1H), 3.10 (s, 3H), 2.56 (s, 3H), 2.42 (s, 3H); Mass (ESI): 442.4 [M+1]; LC-MS: 442 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.44 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=14.16 min (Chiralpak ADH (250×4.6 mm, 5 μm; mobile phase (A) CO2 (B) MeOH; EtOH (70:30); flow Rate: 3.0 mL/min); Optical rotation [α]D25.01: +142.49 (c 0.25, DCM).
Example 33
Synthesis of 7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (2 mg, 0.002 mmol) and Xantphos (4.3 mg, 0.007 mmol) in 1, 4-dioxane (0.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.16 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (64 mg, 0.33 mmol). and cesium carbonate (76 mg, 0.23 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 72 h in a sealed tube. After consumption of staring material (monitored by TLC and LCMS), the mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 60 mgs further purified by preparative HPLC [Kromasil C18 (250×21.2 mm 10 um) (20 mg loading; n-hexane; CH2Cl2:MeOH (50:50); (85:15) as the mobile phase with a Flow rate=15 mL/min] to afford 7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (15 mg, 20%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.02-8.01 (m, 1H), 7.76 (s, 1H), 7.63 (s, 1H), 7.44-7.41 (m, 2H), 7.08-7.09 (m, 1H), 6.95-6.85 (m, 3H), 4.77-4.76 (m, 1H), 4.23 (s, 2H), 3.16 (s, 3H), 2.24 (s, 3H); Mass (ESI): 453.4 [M+1]; LC-MS: 453.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 10% MeOH:CH2Cl2 (Rf: 0.3).
Racemic compound of Example 33 was separated using a Chiralpak IA (250×20 mm, 5 μm (35 mg loading; 0.1% TFA in n-hexane: CH2Cl2:MeOH (15:85) (A:B; 80:20) as the mobile phase) to provide the compound of Example 33A (Fraction I (+)) and the compound of Example 33B (Fraction II (−)).
Example 33A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 33A was produced as described in Example 33. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.02-8.01 (m, 1H), 7.79 (s, 1H), 7.61 (s, 1H), 7.41-7.39 (m, 2H), 7.07 (s, 1H), 6.93-6.81 (m, 3H), 4.77-4.75 (m, 1H), 4.21 (s, 2H), 3.14 (s, 3H), 2.23 (s, 3H); Mass (ESI): 453.4 [M+1]; LC-MS: 453.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.19 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=14.62 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 60:40; flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +130.22 (c 0.25, DCM).
Example 33B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 33B was produced as described in Example 33. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.02-8.01 (m, 1H), 7.79 (s, 1H), 7.61 (s, 1H), 7.41-7.39 (m, 2H), 7.07 (s, 1H), 6.93-6.81 (m, 3H), 4.77-4.75 (m, 1H), 4.21 (s, 2H), 3.12 (s, 3H), 2.21 (s, 3H); Mass (ESI): 453.4 [M+1]; LC-MS: 453.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.17 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=37.11 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 60:40; flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −124.49 (c 0.25, DCM).
Example 34
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial added a suspension of Pd2(dba)3 (13 mg, 0.01 mmol) and Xantphos (25 mg, 0.04 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (111 mg, 0.58 mmol) and cesium carbonate (132 mg, 0.40 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 24 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 90 mg of compound further washed with ACN (2×1 mL), ether (2×1 mL) and pentane (2×1 mL) to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (30 mg, 24%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.02-7.98 (m, 1H), 7.76 (s, 1H), 7.56 (s, 1H), 7.43-7.41 (m, 1H), 7.36-7.32 (m, 1H), 7.26-7.17 (m, 3H), 7.08-7.09 (m, 1H), 6.98 (d, 1H), 5.01-4.99 (m, 1H), 4.26-4.22 (m, 1H), 4.14-4.11 (m, 1H), 3.08 (s, 3H), 2.42 (s, 3H), 2.24 (s, 3H); Mass (ESI): 431.4 [M+1]; LC-MS: 431.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 70% EtOAc:hexanes (Rf: 0.3).
Racemic compound of Example 34 was separated using a Chiralpak IA (250×20 mm, 5 μm (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (75:25) as the mobile phase) to provide the compound of Example 34A (Fraction I (+)) and the compound of Example 34B (Fraction II (−)).
Example 34A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 34A was produced as described in Example 34. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.98 (m, 1H), 7.74 (s, 1H), 7.57 (s, 1H), 7.41-7.39 (m, 1H), 7.37-7.30 (m, 1H), 7.28-7.15 (m, 3H), 7.09-7.08 (m, 1H), 6.98 (d, 1H), 5.00-4.98 (m, 1H), 4.27-4.20 (m, 1H), 4.14-4.09 (m, 1H), 3.08 (s, 3H), 2.40 (s, 3H), 2.21 (s, 3H); Mass (ESI): 431.4 [M+1]; LC-MS: 430.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=10.88 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +180.78 (c 0.25, DCM).
Example 34B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 34B was produced as described in Example 34. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.98 (m, 1H), 7.74 (s, 1H), 7.57 (s, 1H), 7.41-7.39 (m, 1H), 7.37-7.30 (m, 1H), 7.28-7.15 (m, 3H), 7.09-7.08 (m, 1H), 6.98 (d, 1H), 5.00-4.98 (m, 1H), 4.27-4.20 (m, 1H), 4.14-4.09 (m, 1H), 3.08 (s, 3H), 2.40 (s, 3H), 2.21 (s, 3H); Mass (ESI): 431.5 [M+1]; LC-MS: 431 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=13.75 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: −178.49 (c 0.25, DCM).
Example 35
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (13 mg, 0.01 mmol) and Xantphos (25 mg, 0.04 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (124 mg, 0.58 mmol) and cesium carbonate (132 mg, 0.40 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 12 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 1.5-2% MeOH:CH2Cl2 to afford 100 mgs further purified by preparative TLC using 60% EtOAc:hexanes to afford N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (30 mg, 23%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.31 (m, 1H), 7.71-7.70 (m, 1H), 7.57 (br s, 1H), 7.46 (s, 1H), 7.41 (d, 1H), 7.31-7.15 (m, 5H), 7.00 (d, 1H), 5.00-4.99 (m, 1H), 4.25-4.22 (m, 1H), 4.14-4.10 (m, 1H), 3.85 (s, 3H), 3.11 (s, 3H), 2.53 (s, 3H), 2.41 (s, 3H); Mass (ESI): 454.5 [M+1]; LC-MS: 454.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 70% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 35 was separated using a Chiralpak IA (250×20 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: THF:MeOH (80:20); (80:20) as the mobile phase to provide the compound of Example 35A (Fraction I (−)) and the compound of Example 35B (Fraction II (+)).
Example 35A
Synthesis of (−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 35A was produced as described in Example 35. Analytical data for Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.30 (m, 1H), 7.71-7.70 (m, 1H), 7.57 (s, 1H), 7.49 (s, 1H), 7.45 (d, 1H), 7.33-7.13 (m, 5H), 7.00 (d, 1H), 5.02-5.00 (m, 1H), 4.26-4.21 (m, 1H), 4.16-4.11 (m, 1H), 3.87 (s, 3H), 3.12 (s, 3H), 2.58 (s, 3H), 2.41 (s, 3H); Mass (ESI): 454.4 [M+1]; LC-MS: 454 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.48 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=14.96 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (80:20) (A:B: 80:20; flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −184.73 (c 0.25, DCM).
Example 35B
Synthesis of (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 35B was produced as described in Example 35. Analytical data for Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.30 (m, 1H), 7.71-7.70 (m, 1H), 7.57 (s, 1H), 7.49 (s, 1H), 7.45 (d, 1H), 7.33-7.13 (m, 5H), 7.00 (d, 1H), 5.02-5.00 (m, 1H), 4.26-4.21 (m, 1H), 4.16-4.11 (m, 1H), 3.87 (s, 3H), 3.12 (s, 3H), 2.58 (s, 3H), 2.41 (s, 3H); Mass (ESI): 454.4 [M+1]; LC-MS: 454 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=17.63 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (80:20) (A:B: 80:20; flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +188.46 (c 0.25, DCM).
Example 36
Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (7 mg, 0.007 mmol) and Xantphos (14 mg, 0.02 mmol) in 1, 4-dioxane (0.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.15 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (64 mg, 0.31 mmol) and cesium carbonate (73 mg, 0.23 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative TLC using 60% EtOAc:hexanes to afford 60 mgs further purified by preparative HPLC [Kromasil-silica (250×21.2 mm×10 um) (30 mg loading; n-hexane; CH2Cl2:CH3OH (50:50); (80:20) as the mobile phase with a Flow rate=15 mL/min] to afford N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (10 mg, 13%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.39 (m, 1H), 7.92-7.88 (m, 1H), 7.64 (s, 1H), 7.51-7.41 (m, 4H), 7.04 (t, 2H), 4.75-4.73 (m, 1H), 4.22-4.21 (m, 2H), 3.17 (s, 3H), 2.57 (s, 3H); Mass (ESI): 482.5 [M+1]; LC-MS: 482.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.09 min. 0.05% Aq TFA:ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.79 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 70% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 36 was separated using a Chiralpak IA (250×20 mm, 5 μm (25 mg loading; 0.1% TFA in n-hexane: CH2Cl2:MeOH (50:50); (75:15) as the mobile phase) to provide the compound of Example 36A (Fraction I (+)) and the compound of Example 36B (Fraction II (−)).
Example 36A
Synthesis of (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 36A was produced as described in Example 36. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.91-7.86 (m, 1H), 7.61 (s, 1H), 7.50-7.39 (m, 4H), 7.03 (t, 2H), 4.73-4.70 (m, 1H), 4.22-4.20 (m, 2H), 3.19 (s, 3H), 2.58 (s, 3H); Mass (ESI): 482.3 [M+1]; LC-MS: 482.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.32 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.76 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=11.63 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% TFA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +138.36 (c 0.25, DCM).
Example 36B
Synthesis of (−)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 36B was produced as described in Example 36. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.91-7.86 (m, 1H), 7.61 (s, 1H), 7.50-7.39 (m, 4H), 7.03 (t, 2H), 4.73-4.70 (m, 1H), 4.22-4.20 (m, 2H), 3.19 (s, 3H), 2.58 (s, 3H); Mass (ESI): 482.3 [M+1]; LC-MS: 482.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.32 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.76 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=14.43 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% TFA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −139.28 (c 0.25, DCM).
Example 37
Synthesis of 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial added a suspension of Pd2(dba)3 (7 mg, 0.008 mmol) and Xantphos (14 mg, 0.02 mmol) in 1, 4-dioxane (0.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.15 mmol), 4-(2-methylpyridin-4-yl) aniline (58 mg, 0.31 mmol) and cesium carbonate (72 mg, 0.22 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 20 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 60% EtOAc:hexanes to afford 50 mgs further purified by preparative TLC using 50% EtOAc:hexanes to afford 8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (10 mg, 14%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.38-8.36 (m, 1H), 7.81 (d, 2H), 7.69 (d, 2H), 7.61 (s, 1H), 7.57 (s, 1H), 7.50-7.48 (m, 1H), 7.04 (t, 2H), 4.74-4.72 (m, 1H), 4.21-4.20 (m, 2H), 3.16 (s, 3H), 2.57 (s, 3H); Mass (ESI): 464.5 [M+1]; LC-MS: 464.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.03 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 50% EtOAc:hexanes (Rf: 0.3).
Racemic compound of Example 37 was separated using a Chiralpak IA (250×20 mm, 5 μm (25 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (70:30) as the mobile phase) to provide the compound of Example 37A (Fraction I (+)) and the compound of Example 37B (Fraction II (−)).
Example 37A
Synthesis of (+)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 37A was produced as described in Example 37. Analytical data for product Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.39-8.35 (m, 1H), 7.78 (d, 2H), 7.64 (d, 2H), 7.59 (s, 1H), 7.58 (s, 1H), 7.46-7.44 (m, 1H), 7.04-7.00 (m, 2H), 4.72-4.70 (m, 1H), 4.20 (s, 2H), 3.11 (s, 3H), 2.52 (s, 3H); LC-MS: 464.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=11.02 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% TFA in n-hexane (B) EtOH:MeOH (50:50) (70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D24.98: +143.56 (c 0.25%, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 37B
Synthesis of (−)-8-methyl-N-(4-(2-methylpyridin-4-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 37B was produced as described in Example 37. Analytical data for product Fraction II (−): 1H NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.80 (d, 2H), 7.64 (d, 2H), 7.60 (s, 1H), 7.58 (s, 1H), 7.50-7.48 (m, 1H), 7.01 (t, 2H), 4.73-4.70 (m, 1H), 4.21 (s, 2H), 3.18 (s, 3H), 2.55 (s, 3H); Mass (ESI): 464.4 [M+1]; LC-MS: 464.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=13.29 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% TFA in n-hexane (B) EtOH:MeOH (50:50) (70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D25.01: −148.27 (c 0.25%, DCM).
Example 38
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol) in isopropanol (0.8 mL) under an argon atmosphere were added concentrated hydrochloric acid (catalytic amount) and 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (97 mg, 0.50 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the reaction was diluted with a saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 3% MeOH: CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (12 mg, 10%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.99 (m, 1H), 7.73 (s, 1H), 7.60 (s, 1H), 7.40-7.39 (m, 1H), 7.30 (t, 1H), 7.07-7.00 (m, 3H), 4.71 (s, 1H), 4.21 (s, 2H), 3.13 (s, 3H), 2.23 (s, 3H); Mass (ESI): 471.4 [M+1]; LC-MS: 471.6 (M+1); (column; X-Selected CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% TFA (Aq); 0.50 mL/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Example 39
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (2 mg, 0.002 mmol) and Xantphos (4 mg, 0.006 mmol) in 1, 4-dioxane (0.3 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.15 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (68 mg, 0.31 mmol) and cesium carbonate (72 mg, 0.21 mmol) in 1, 4-dioxane (0.3 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was concentrated in vacuo. The crude material was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC [Kromasil C18 (250×21.2 mm 10 um) (50 mg loading; CH3CN; 0.05% TFA Aq (0.1/90, 2/80, 15/60, 25/10, 35/10) as the mobile phase with a Flow rate=15 mL/min] to afford N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 25%) as a yellow solid. 1H-NMR (CD3OD, 500 MHz): δ 8.35-8.34 (m, 1H), 7.71 (s, 1H), 7.64 (s, 1H), 7.49 (s, 1H), 7.44-7.43 (m, 1H), 7.34-7.30 (m, 2H), 7.07 (t, 2H), 4.78. 4.76 (m, 1H), 4.23 (d, 2H), 3.88 (s, 3H), 3.20 (s, 3H), 2.56 (s, 3H); Mass (ESI): 494.6 [M+1]; LC-MS: 494.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.02 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 (50×2.1 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 50% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 39 was separated using a Chiralpak IB (250×20 mm, 5 μm (20 mg loading; A) 0.1% DEA in n-hexane B) EtOH (A:B: 90:10) to provide the compound of Example 39A (Fraction I (+)) and the compound of Example 39B (Fraction II (−))
Example 39A
Synthesis of (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 39A was produced as described in Example 39. Analytical data for Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.32 (br s, 1H), 7.71 (s, 1H), 7.64 (s, 1H), 7.49 (s, 1H), 7.44-7.43 (m, 1H), 7.32-7.25 (m, 2H), 7.01-6.99 (m, 2H), 4.82-4.80 (m, 1H), 4.20-4.19 (m, 2H), 3.87 (s, 3H), 3.19 (s, 3H), 2.52 (s, 3H); Mass (ESI): 494.4 [M+1]; LC-MS: 494.4 (M+1); (column; X-Select C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=21.16 min (Chiralpak IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +160.80 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 39B
Synthesis of (−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 39B was produced as described in Example 39. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.29 (m, 1H), 7.69 (s, 1H), 7.60 (s, 1H), 7.46 (s, 1H), 7.41-7.39 (m, 1H), 7.30-7.27 (m, 2H), 7.01-6.99 (m, 2H), 4.71-4.69 (m, 1H), 4.20 (s, 2H), 3.82 (s, 3H), 3.14 (s, 3H), 2.51 (s, 3H); Mass (ESI): 494.4 [M+1]; LC-MS: 494.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min. 5 mM NH4OAc: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=24.64 min (Chiralpak IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (90:10) 0:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −150.80 (c=0.25, DCM); TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Example 40
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (2 mg, 0.002 mmol) and Xantphos (4 mg, 0.006 mmol) in 1, 4-dioxane (0.3 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.15 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (64 mg, 0.31 mmol) and cesium carbonate (73 mg, 0.21 mmol) in 1, 4-dioxane (0.3 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was concentrated in vacuo. The crude material was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC [Kromasil C18 (250×21.2 mm 10 um) (50 mg loading; CH3CN; 0.05% TFA Aq (0.1/90, 2/80, 15/60, 25/10, 35/10) as the mobile phase with a Flow rate=15 mL/min] to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (27 mg, 35%) as a brown solid. 1H-NMR (CD3OD, 400 MHz): δ 7.75 (s, 1H), 7.68 (s, 1H), 7.61 (s, 1H), 7.25 (d, 1H), 7.18 (d, 1H), 7.06-7.02 (m, 2H), 6.97 (s, 1H), 4.74-4.73 (m, 1H), 4.21-4.20 (m, 2H), 3.85 (s, 3H), 3.17 (s, 3H), 2.23 (s, 3H); Mass (ESI): 483.5 [M+1]; LC-MS: 483.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.95 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 7.76 min. ACN: 0.05% Aq TFA; 1.0 mL/min. TLC: 70% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 40 was separated using a Chiralcel A-DH (250×4.6 mm, 5 μm (30 mg loading; A) CO2B) 0.1% DEA in MeOH (A:B: 70:30) to provide the compound of Example 40A (Fraction I (−)) and the compound of Example 40B (Fraction II (+)).
Example 40A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 40A was produced as described in Example 40. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.73 (s, 1H), 7.65 (s, 1H), 7.60 (s, 1H), 7.22 (d, 1H), 7.18 (d, 1H), 7.09-7.00 (m, 2H), 6.97 (s, 1H), 4.72-4.70 (m, 1H), 4.20 (s, 2H), 3.82 (s, 3H), 3.19 (s, 3H), 2.21 (s, 3H); Mass (ESI): 483.4 [M+1]; LC-MS: 483 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=6.89 min (Chiralcel AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in Methanol (70:30); flow Rate: 3.0 mL/min); Optical rotation [α]D25.01: −137.42 (c 0.25, DCM).
Example 40B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 40B was produced as described in Example 40. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.73 (s, 1H), 7.65 (s, 1H), 7.60 (s, 1H), 7.22 (d, 1H), 7.18 (d, 1H), 7.09-7.00 (m, 2H), 6.97 (s, 1H), 4.72-4.70 (m, 1H), 4.20 (s, 2H), 3.82 (s, 3H), 3.19 (s, 3H), 2.21 (s, 3H); Mass (ESI): 483.4 [M+1]; LC-MS: 483 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=8.83 min (Chiralcel AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in Methanol (70:30); flow Rate: 3.0 mL/min); Optical rotation [α]D25.01: +146.03 (c 0.25, DCM).
Example 41
Synthesis of 7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (2.3 mg, 0.002 mmol) and Xantphos (4.3 mg, 0.007 mmol) in 1, 4-dioxane (0.3 mL). The suspension was degassed, heated to 100° C. and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.16 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (68 mg, 0.33 mmol) and cesium carbonate (76 mg, 0.23 mmol) in 1, 4-dioxane (0.3 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 100° C. and stirred for 40 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was concentrated in vacuo. The crude material was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 60% EtOAc:hexanes to afford 70 mgs further purified by preparative HPLC [Kromasil C18 (250×21.2 mm 10 um) (30 mg loading; n-hexane; CH2Cl2:MeOH (50:50); (90:10) as the mobile phase with a Flow rate=15 mL/min] to afford 7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (12 mg, 15%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.92-7.88 (m, 1H), 7.63 (s, 1H), 7.51-7.42 (m, 4H), 6.95-6.86 (m, 3H), 4.78-4.77 (m, 1H), 4.23 (d, 2H), 3.18 (s, 3H), 2.57 (s, 3H); LC-MS: 464.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 50% EtOAc:hexanes (Rf: 0.4).
Racemic compound of Example 41 was separated using a Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (20:80) (A:B: 80:20) to provide the compound of Example 41A (Fraction I (+)) and the compound of Example 41B (Fraction II (−)).
Example 41A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 41A was produced as described in Example 41. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.39 (m, 1H), 7.90-7.88 (m, 1H), 7.60 (s, 1H), 7.49-7.39 (m, 4H), 6.91-6.81 (m, 3H), 4.78-4.77 (m, 1H), 4.23 (d, 2H), 3.13 (s, 3H), 2.52 (s, 3H); Mass (ESI): 464.4 [M+1]; LC-MS: 464.3 (M+1); (column; X-Select C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=14.45 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (20:80) (80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +172.01 (c=0.25, DCM); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 41B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 41B was produced as described in Example 41. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.91-7.89 (m, 1H), 7.61 (s, 1H), 7.49-7.30 (m, 4H), 6.93-6.80 (m, 3H), 4.78-4.77 (m, 1H), 4.23 (d, 2H), 3.12 (s, 3H), 2.56 (s, 3H); Mass (ESI): 464.4 [M+1]; LC-MS: 464.3 (M+1); (column; X-Select C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC: (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. Chiral HPLC: RT=16.71 min (Chiralpak IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (20:80) (80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −154.78 (c=0.25, DCM); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 42
Synthesis of 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (12 mg, 0.01 mmol) and Xantphos (23 mg, 0.04 mmol) in 1, 4-dioxane (0.75 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.27 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (115 mg, 0.53 mmol) and cesium carbonate (123 mg, 0.37 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 5% MeOH: CH2Cl2 and further purified by preparative HPLC [Kromasil C18 (250×21.2 mm 10 um) (25 mg loading; n-hexane; CH2Cl2:MeOH (50:50); (85:15) as the mobile phase with a Flow rate=15 mL/min] to afford 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 16%) as an off-white solid.
1H-NMR (CD3OD, 500 MHz): δ 8.36 (d, 1H), 7.72 (s, 1H), 7.62 (s, 1H), 7.50 (s, 1H), 7.44 (d, 1H), 7.32-7.28 (m, 2H), 6.96 (t, 2H), 6.90 (d, 1H), 4.80 (s, 1H), 4.22 (s, 2H), 3.84 (s, 3H), 3.20 (s, 3H), 2.56 (s, 3H)); Mass (ESI): 476.6 [M+1]; LC-MS: 476.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.72 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 70% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 42 was separated using a Chiralcel-ADH (250×20 mm, 5 μm (25 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (90:10) as the mobile phase) to provide the compound of Example 42A (Fraction I (+)) and the compound of Example 42B (Fraction II (−)).
Example 42A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 42A was produced as described in Example 42. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 500 MHz): δ 8.34 (d, 1H), 7.72 (s, 1H), 7.63 (s, 1H), 7.49 (s, 1H), 7.43 (d, 1H), 7.34-7.28 (m, 2H), 6.99-6.89 (m, 3H), 4.78 (s, 1H), 4.24 (s, 2H), 3.88 (s, 3H), 3.20 (s, 3H), 2.58 (s, 3H)); Mass (ESI): 476.4 [M+1]; LC-MS: 475.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=25.73 min (Chiralcel-OD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +178.27 (c 0.25, DCM).
Example 42B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 42B was produced as described in Example 42. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 500 MHz): δ 8.34 (d, 1H), 7.72 (s, 1H), 7.63 (s, 1H), 7.49 (s, 1H), 7.43 (d, 1H), 7.34-7.28 (m, 2H), 6.99-6.89 (m, 3H), 4.78 (s, 1H), 4.24 (s, 2H), 3.88 (s, 3H), 3.20 (s, 3H), 2.58 (s, 3H)); Mass (ESI): 476.4 [M+1]; LC-MS: 476 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=29.71 min (Chiralcel-OD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −171.66 (c 0.25, DCM).
Example 43
Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (8 mg, 0.009 mmol) and Xantphos (16 mg, 0.02 mmol) in 1, 4-dioxane (0.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.18 mmol), 4-(4-methyl-1H-imidazol-1-yl) aniline (63 mg, 0.36 mmol) and cesium carbonate (84 mg, 0.85 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 40 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (25 mL) and extracted with EtOAc (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 3-4% MeOH: CH2Cl2 which was further washed with ACN: pentane (1:1, 10 mL) to afford 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 26%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.79 (d, 2H), 7.54 (s, 1H), 7.39 (d, 2H), 7.26-7.15 (m, 4H), 6.99 (d, 1H), 5.00-4.98 (m, 1H), 4.25-4.21 (m, 1H), 4.13-4.10 (m, 1H), 3.08 (s, 3H), 2.41 (s, 3H), 2.24 (s, 3H); Mass (ESI): 413.5 [M+1]; LC-MS: 413.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.33 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.55 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 50% EtOAc:hexanes (Rf: 0.7).
Racemic compound of Example 43 was separated using a Chiralpak IB (250×20 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: DCM:MeOH (50:50); (90:10) as the mobile phase) to provide the compound of Example 43A (Fraction I (+)) and the compound of Example 43B (Fraction II (−)).
Example 43A
Synthesis of (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 43A was produced as described in Example 43. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.79 (d, 2H), 7.52 (s, 1H), 7.40 (d, 2H), 7.28-7.17 (m, 4H), 7.00 (d, 1H), 5.00-4.99 (m, 1H), 4.25-4.20 (m, 1H), 4.13-4.10 (m, 1H), 3.08 (s, 3H), 2.41 (s, 3H), 2.24 (s, 3H); Mass (ESI): 413.4 [M+1]; LC-MS: 413.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.76 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.56 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=17.91 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +182.24 (c 0.25, DCM).
Example 43B
Synthesis of (−)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 43B was produced as described in Example 43. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.89 (s, 1H), 7.79 (d, 2H), 7.52 (s, 1H), 7.40 (d, 2H), 7.28-7.17 (m, 4H), 7.00 (d, 1H), 5.00-4.99 (m, 1H), 4.25-4.20 (m, 1H), 4.13-4.10 (m, 1H), 3.08 (s, 3H), 2.41 (s, 3H), 2.24 (s, 3H); Mass (ESI): 413.4 [M+1]; LC-MS: 413.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.76 min. 0.05% TFA in water: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.57 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=21.30 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −165.79 (c 0.25, DCM).
Example 44
Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (7 mg, 0.007 mmol) and Xantphos (14 mg, 0.02 mmol) in 1, 4-dioxane (0.25 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.15 mmol), 4-(4-methyl-1H-imidazol-1-yl) aniline (55 mg, 0.31 mmol) and cesium carbonate (72 mg, 0.22 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The resultant mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (5 mL) and extracted with EtOAc (2×5 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative [Kromasil C18 (250×21.2 mm 10 um) (45 mg loading; CH3CN; 0.05% TFA (0.1/90, 15/70, 25/10, 40/10) as the mobile phase with a Flow rate=15 mL/min] to afford 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (10 mg, 14%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.92 (s, 1H), 7.78 (d, 2H), 7.60 (s, 1H), 7.40 (d, 2H), 7.20 (s, 1H), 7.08-7.02 (m, 2H), 4.70-4.68 (m, 1H), 4.23 (d, 2H), 3.14 (s, 3H), 2.26 (s, 3H); Mass (ESI): 453.4 [M+1]; LC-MS: 453.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.44 min 5 mM NH4OAc: ACN; 0.80 mL/min); UPLC: (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% Aq TFA; 0.5 mL/min. TLC: 5% MeOH/DCM (Rf: 0.3).
Example 45
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine




Synthesis of 2-Bromo-4-(methylamino)pyrimidin-5-ol
2-Chloro-5-methoxy-N-methylpyrimidin-4-amine (295 mg, 1.69 mmol) and HBr/AcOH 30% (3.4 mL) were charged in a reaction flask and heated to 110° C. After LCMS analysis showed complete conversion, the volatile components were evaporated and the residue diluted with water. The aqueous layer was basified using a saturated solution of sodium bicarbonate (pH ̃6-7) and then extracted with ethyl acetate several times. The combined organic fractions were dried over Na2SO4, filtered and concentrated to afford 2-Bromo-4-(methylamino)pyrimidin-5-ol used crude in the next step (108 mg, 31%). 1H NMR (DMSO-d6, 400 MHz): δ 10.18 (s, 1H), 7.35 (s, 1H), 7.24 (s, 1H), 2.77 (d, J=4.8 Hz, 3H); LRMS (ESpos) calcd for C5H6BrN3O [M+1]+: 203.97. found: 204.27.




Synthesis of 2-(2-Bromo-4-(methylamino)pyrimidin-5-yloxy)-1-phenylethanone
2-Bromo-4-(methylamino)pyrimidin-5-ol (100 mg, 0.49 mmol) was dissolved in MeCN (2.0 mL) and cooled to 0° C. To this solution was added Cs2CO3 (355 mg, 1.03 mmol) followed by 2-bromo-1-phenylethanone (107 mg, 0.54 mmol). After LCMS analysis showed complete conversion, the mixture was partitioned between ethyl acetate and a saturated sodium bicarbonate solution. The layers were separated and the aqueous was extracted with ethyl acetate twice. The combined organic fractions were dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by trituration in CH2Cl2:hexanes to afford 2-(2-Bromo-4-(methylamino)pyrimidin-5-yloxy)-1-phenylethanone (117 mg, 74%).
1H NMR (DMSO-d6, 400 MHz): δ 7.80 (s, 1H), 7.46-7.35 (m, 5H), 7.11 (s, 1H), 4.16 (d, J=11.2 Hz, 1H), 4.01 (d, J=11.2 Hz, 1H), 2.75 (s, 3H); LRMS (ESpos) calcd for C13H12BrN3O2 [M+1]+: 322.01. found: 322.46.




Synthesis of 2-Bromo-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b] [1,4] oxazine
To a solution of 2-(2-Bromo-4-(methylamino)pyrimidin-5-yloxy)-1-phenylethanone (112 mg, 0.35 mmol) in 1,2-dichloroethane (1.8 mL) was added NaBH(OAc)3 (148 mg, 0.7 mmol) was added, followed by TFA (27 μL, 0.35 mmol). After LCMS analysis showed complete conversion, the mixture was partitioned between CH2Cl2 and a 1N sodium hydroxide solution. The layers were separated and the aqueous was extracted with CH2Cl2 twice. The combined organic fractions were dried over Na2SO4, filtered and concentrated. The residue was purified by normal phase chromatography on silica (gradient 0-5% MeOH/CH2Cl2) to afford 2-Bromo-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (72 mg, 67%). 1H NMR (CDCl3, 400 MHz): δ 7.66 (s, 1H), 7.42-7.27 (m, 3H), 7.20-7.14 (m, 2H), 4.57 (t, J=3.6 Hz, 1H), 4.26 (dd, J=11.2, 3.3 Hz, 1H), 4.17 (dd, J=11.2, 3.9 Hz, 1H), 3.08 (s, 3H); LRMS (ESpos) calcd for C13H12BrN3O [M+1]+: 306.02. found: 306.52.




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b] [1,4] oxazin-2-amine
To a flask containing 2-Bromo-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (20 mg, 0.07 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl)aniline (15 mg, 0.07 mmol) in 1-methylpyrrolidin-2-one (0.28 mL) were added 4N HCl in dioxane (70 μL, 1:5 ratio to 1-methylpyrrolidin-2-one). The reaction mixture was stirred at 110° C. for 16 h and water was added, followed by a 1N NaOH solution and ethyl acetate. The layers were separated and the aqueous was extracted with ethyl acetate twice, the combined organic fractions were washed with water, brine, dried over Na2SO4, filtered and concentrated in vacuo. The residue was purified by normal phase chromatography on silica (gradient 0-5% MeOH/CH2Cl2) and C18 column chromatography (gradient 0-95% MeCN+0.1% HCOOH/H2O) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine as a white solid (13 mg, 46%). HPLC analysis on a chiral stationary phase (ChiralPak AD 250×4.6 mm, 40% (iPrOH+0.1% Et2NH) in (hexane+0.1% Et2NH), 1.0 mLmin−1, DAD 254 nm) tr=9.69 min and 12.52 min. 1H NMR (CDCl3, 400 MHz) δ 7.70-7.64 (m, 3H), 7.43-7.35 (m, 3H), 7.24-7.18 (m, 3H), 7.14 (d, J=8.5 Hz, 1H), 7.05 (dd, J=8.5, 2.3 Hz, 1H), 6.87 (s, 1H), 4.57 (t, J=3.5 Hz, 1H), 4.26 (dd, J=11.1, 3.3 Hz, 1H), 4.15 (dd, J=11.1, 3.9 Hz, 1H), 3.84 (s, 3H), 3.12 (s, 3H), 2.31 (d, J=0.9 Hz, 3H); LRMS (ESpos) calcd for C24H24N6O2 [M+1-1]+: 429.20. found: 429.76.
Example 46
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine




Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b] [1,4]oxazin-2-amine
To a reaction flask containing 2-Bromo-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazine (20 mg, 0.07 mmol), 3-methoxy-4-(2-methylpyridin-4-yl)aniline (15 mg, 0.07 mmol) in 1-methylpyrrolidin-2-one (0.30 mL) was added 4N HCl in dioxane (70 μL, 1:5 ratio to 1-methylpyrrolidin-2-one) was added. The reaction mixture was stirred at 130° C. for 16 h and water was added, followed by a 1N NaOH solution and ethyl acetate twice. The layers were separated and the aqueous was extracted with ethyl acetate twice. The combined organic fractions were washed with water, brine, dried over Na2SO4, filtered and concentrated. The residue was purified by silica gel column chromatography (gradient 0-5% MeOH/CH2Cl2) and C18 column chromatography (gradient 0-95% MeCN+0.1% HCOOH/H2O) to afford N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine as a yellow solid (29 mg, 27%). HPLC analysis on a chiral stationary phase (ChiralPak AD 250×4.6 mm, 40% (iPrOH+0.1% Et2NH) in (hexane+0.1% Et2NH), 1.0 mLmin−1, DAD 254 nm) tr=10.17 min and 14.34 min. 1H NMR (CDCl3, 400 MHz) δ 8.46 (s, 1H), 7.93 (s, 1H), 7.71-7.58 (m, 2H), 7.44-7.34 (m, 5H), 7.29 (d, J=8.3 Hz, 1H), 7.22 (dd, J=7.8, 1.5 Hz, 2H), 7.17 (dd, J=8.3, 1.8 Hz, 1H), 4.60 (t, J=3.5 Hz, 1H), 4.28 (dd, J=11.1, 3.3 Hz, 1H), 4.17 (dd, J=11.1, 3.8 Hz, 1H), 3.86 (s, 3H), 3.15 (s, 3H), 2.62 (s, 3H); LRMS (ESpos) calcd for C26H25N5O2 [M+H]+: 440.20 found: 440.6.
Example 47
Synthesis of 7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-bromo-3-phenylpropan-2-one
To a stirred solution of 2-phenylacetic acid (5 g, 36.76 mmol) in CH2Cl2 (50 mL) was added oxalyl chloride (4.6 g, 36.76 mmol) and DMF (2 drops) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of acid (monitored by TLC), the mixture was concentrated in vacuo. The crude material was dissolved in ether and a solution of CH2N2 in ether was added at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the mixture was concentrated in vacuo. To a stirred solution of crude material in THF (20 mL) was added a solution of 48% aq HBr (5 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a sodium bicarbonate solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were washed successively with a sodium bicarbonate solution (50 mL) and water (50 mL). The organic layer was dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-bromo-3-phenylpropan-2-one (6 g, 76%) as a viscous oil. 1H-NMR (CDCl3, 400 MHz): δ 7.38-7.30 (m, 3H), 7.27-7.20 (m, 2H), 3.92 (s, 2H), 3.89 (s, 2H); TLC: 10% EtOAc:hexanes (Rf: 0.6).
Synthesis of 1-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy)-3-phenylpropan-2-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)amino)-4-(methylamino)pyrimidin-5-ol (200 mg, 0.61 mmol) in DMF (2 mL) was added potassium carbonate (169 mg, 1.22 mmol) followed by 1-bromo-3-phenylpropan-2-one (196 mg, 9.20 mmol) at 0° C. and stirred for 5 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with ice cold water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy)-3-phenylpropan-2-one (180 mg) as a pale brown solid. LC-MS: 441.0 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.36 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: EtOAc (Rf: 0.6).
Synthesis of 7-benzyl-N-(3-methoxy-4-(4-methyl-M-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1,4] oxazin-2-amine
To a stirred solution of 1-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy)-3-phenylpropan-2-one (100 mg, 0.21 mmol) in 1, 2-dichloroethane (2 mL) was added trifluoroacetic acid (0.21 mmol) followed by sodium triacetoxyborohydride (92 mg, 0.43 mmol) and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with 1N sodium hydroxide (10 mL) and extracted with CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 20% EtOAc:hexanes to afford 7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b][1, 4] oxazin-2-amine (40 mg, 61%) as a white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.78 (s, 1H), 7.70 (s, 1H), 7.54 (s, 1H), 7.36-7.26 (m, 5H), 7.19-7.12 (m, 2H), 6.91 (s, 1H), 4.08 (d, 1H), 3.88 (s, 3H), 3.86-3.84 (m, 1H), 3.75-3.71 (m, 1H), 3.14 (s, 3H), 3.10-3.09 (m, 1H), 2.90-2.88 (m, 1H), 2.22 (s, 3H); Mass (ESI): 443.4 [M+1]; LC-MS: 443 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.57 min. ACN: 0.025% TFA (Aq); 0.50 ml/min TLC: 50% EtOAc:hexanes (Rf: 0.5).
Racemic compound of Example 47 was separated using a Chiralpak IA (250×20 mm, 5 μm (45 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (70:30) as the mobile phase) to provide the compound of Example 47A (Fraction I (+)) and the compound of Example 47B (Fraction II (−)).
Example 47A
Synthesis of (+)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 47A was produced as described in Example 47. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.75 (s, 1H), 7.64 (s, 1H), 7.53 (s, 1H), 7.37-7.21 (m, 5H), 7.19-7.12 (m, 2H), 6.91 (s, 1H), 4.08 (d, 1H), 3.85 (s, 3H), 3.84-3.80 (m, 1H), 3.75-3.70 (m, 1H), 3.12 (s, 3H), 3.11-3.09 (m, 1H), 2.87-2.83 (m, 1H), 2.21 (s, 3H); Mass (ESI): 443.5 [M+1]; LC-MS: 443.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.85 min. 0.05% Aq TFA: ACN; 0.8 mL/min); (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=13.96 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +69.28 (c 0.25, DCM).
Example 47B
Synthesis of (−)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 47B was produced as described in Example 47. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.75 (s, 1H), 7.64 (s, 1H), 7.53 (s, 1H), 7.37-7.21 (m, 5H), 7.19-7.12 (m, 2H), 6.91 (s, 1H), 4.08 (d, 1H), 3.85 (s, 3H), 3.84-3.80 (m, 1H), 3.75-3.70 (m, 1H), 3.12 (s, 3H), 3.11-3.09 (m, 1H), 2.87-2.83 (m, 1H), 2.21 (s, 3H); Mass (ESI): 443.4 [M+1]; LC-MS: 443.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.85 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=25.86 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −62.46 (c 0.25, DCM).
Example 48
Synthesis of 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (27 mg, 0.03 mmol) and Xantphos (52 mg, 0.09 mmol) in 1, 4-dioxane (2 mL). The mixture was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(2,4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (180 mg, 0.60 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (246 mg, 1.21 mmol), cesium carboate (275 mg, 0.84 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with a sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 3% MeOH:CH2Cl2 to afford 7-(2,4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (45 mg, 16%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 7.78 (s, 1H), 7.69 (s, 1H), 7.60 (s, 1H), 7.28-7.25 (m, 1H), 7.21 (s, 1H), 7.17-7.15 (m, 1H), 7.12-7.06 (m, 1H), 6.98 (s, 2H), 5.03-5.01 (m, 1H), 4.23 (s, 2H), 3.93 (s, 3H), 3.19 (s, 3H), 2.21 (s, 3H); Mass (ESI): 465.4 [M+1]; LC-MS: 464.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.36 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.57 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; TLC: 5% MeOH:CH2Cl2 (Rf: 0.4).
Racemic compound of Example 48 was separated using a Chiralpak-IA (250×20 mm, 5 μm (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as the mobile phase) to provide the compound of Example 48A (Fraction I (−)) and the compound of Example 48B (Fraction II (+)).
Example 48A
Synthesis of (−)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 48A was produced as described in Example 48. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.74 (s, 1H), 7.65 (s, 1H), 7.57 (s, 1H), 7.26-7.20 (m, 1H), 7.19 (s, 1H), 7.17-7.00 (m, 2H), 6.96 (s, 2H), 5.02-5.00 (m, 1H), 4.22 (s, 2H), 3.83 (s, 3H), 3.18 (s, 3H), 2.21 (s, 3H); Mass (ESI): 465.4 [M+1]; LC-MS: 465.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.90 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=16.49 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −149.21 (c 0.25, DCM).
Example 48B
Synthesis of (+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 48B was produced as described in Example 48. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.74 (s, 1H), 7.65 (s, 1H), 7.57 (s, 1H), 7.23-7.20 (m, 1H), 7.19 (s, 1H), 7.17-7.00 (m, 2H), 6.96 (s, 2H), 5.02-5.00 (m, 1H), 4.22 (s, 2H), 3.83 (s, 3H), 3.18 (s, 3H), 2.21 (s, 3H); Mass (ESI): 465.4 [M+1]; LC-MS: 465.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: 100% RT=25.61 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 75:25; flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +155.31 (c 0.25, DCM).
Example 49
Synthesis of 7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(4-fluorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (200 mg, 0.61 mmol) in acetonitrile (4 mL) was added cesium carbonate (399 mg, 1.22 mmol) at 0° C. and stirred for 5 min. 2-Bromo-1-(4-fluorophenyl) ethan-1-one (145 mg, 0.67 mmol) was added and the reaction mixture was stirred for 4 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(4-fluorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (250 mg) as an off-white solid. The crude material was used without further purification. TLC: 10% MeOH:CH2Cl2 (Rf: 0.7).
Synthesis of 7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(4-fluorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (250 mg, 0.54 mmol) in 1, 2-dichloroethane (5 mL) was added sodium triacetoxyborohydride (229 mg, 1.08 mmol) followed by trifluoroacetic acid (0.54 mmol) and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a 1N sodium hydroxide solution (20 mL). Water (20 mL) was added and the mixture was extracted with CH2Cl2 (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 5% MeOH:CH2Cl2 to afford 7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 50%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.67 (s, 1H), 7.55 (s, 1H), 7.49 (s, 1H), 7.20-7.10 (m, 3H), 7.09 (d, 2H), 7.01-6.99 (m, 1H), 6.87 (s, 1H), 4.60-4.50 (m, 1H), 4.13-4.06 (m, 1H), 3.09-3.07 (m, 1H), 3.72 (s, 3H), 3.00 (s, 3H), 2.11 (s, 3H); Mass (ESI): 447.4 [M+1]; LC-MS: 446.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.34 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.53 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Racemic compound of Example 49 was separated using a Chiralcel-ODH (250×20 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (85:15) as the mobile phase) to provide the compound of Example 49A (Fraction I (−)) and the compound of Example 49B (Fraction II (+)).
Example 49A
Synthesis of (−)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 49A was produced as described in Example 49. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.70 (s, 1H), 7.59 (s, 1H), 7.30-7.08 (m, 6H), 6.98 (s, 1H), 4.71-4.70 (m, 1H), 4.22 (d, 1H), 4.18 (d, 1H), 3.86 (s, 3H), 3.14 (s, 3H), 2.20 (s, 3H); Mass (ESI): 447.4 [M+1]; LC-MS: 446.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.35 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.53 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=16.58 min (Chiralcel-OD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −131.96 (c 0.25, DCM).
Example 49B
Synthesis of (+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 49B was produced as described in Example 49. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.70 (s, 1H), 7.59 (s, 1H), 7.30-7.08 (m, 6H), 6.98 (s, 1H), 4.71-4.70 (m, 1H), 4.22 (d, 1H), 4.18 (d, 1H), 3.86 (s, 3H), 3.14 (s, 3H), 2.20 (s, 3H); Mass (ESI): 447.4 [M+1]; LC-MS: 447 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.35 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.53 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=19.21 min (Chiralcel-OD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +128.06 (c 0.25, DCM).
Example 50
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (25 mg, 0.02 mmol) and Xantphos (48 mg, 0.08 mmol) in 1, 4-dioxane (1.5 mL). The mixture was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.55 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (226 mg, 1.11 mmol), cesium carbonate (253 mg, 0.78 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Kromacil silica (250×21.2 mm, 10 μm (50 mg loading; CH3CN: 0.05% TFA (0.1/95, 15/70, 25/10, 35/10) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (35 mg, 14%) as a yellow solid. 1H-NMR (CD3OD, 500 MHz): δ 7.79-7.77 (m, 1H), 7.75 (s, 1H), 7.53 (s, 1H), 7.26-7.18 (m, 2H), 7.02 (s, 1H), 4.43-4.42 (m, 1H), 4.00 (t, 2H), 3.89 (s, 3H), 3.86-3.82 (m, 1H), 3.44-3.40 (m, 3H), 3.39-3.36 (m, 3H), 2.25 (s, 3H), 2.10-2.03 (m, 1H), 1.69-1.58 (m, 4H); Mass (ESI): 437.4 [M+1]; LC-MS: 437 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.99 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.27 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; TLC: 5% MeOH:CH2Cl2 (Rf: 0.4).
Example 51
Synthesis of 7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(2-chlorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (150 mg, 0.46 mmol) in acetonitrile (3 mL) was added cesium carbonate (300 mg, 0.92 mmol) at 0° C. and stirred for 5 min. 2-Bromo-1-(2-chlorophenyl) ethan-1-one (118 mg, 0.50 mmol) was added and the reaction mixture was stirred for 6 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (3×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chlorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (130 mg) as an off-white solid and used in the next step without further purification. TLC: 10% MeOH:CH2Cl2 (Rf: 0.4).
Synthesis of 7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(2-chlorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (130 mg, 0.27 mmol) in 1, 2-dichloroethane (3 mL) was added sodium triacetoxyborohydride (115 mg, 0.54 mmol) followed by trifluoroacetic acid (21 μL) and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a 1N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 5% MeOH:CH2Cl2 to afford 70 mg of compound which was further purified by preparative HPLC to afford 7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (35 mg, 18%) as a pale yellow solid. 1H-NMR (CD3OD, 400 MHz): δ 7.75 (s, 1H), 7.68 (s, 1H), 7.59 (s, 1H), 7.48 (d, 1H), 7.33-7.29 (m, 3H), 7.20-7.17 (m, 1H), 7.07 (d, 1H), 6.97 (s, 1H), 5.20-5.18 (m, 1H), 4.30-4.21 (m, 2H), 3.86 (s, 3H), 3.17 (s, 3H), 2.21 (s, 3H); Mass (ESI): 463.4 [M+1]; LC-MS: 463 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 80% EtOAc:hexanes (Rf: 0.4).
Racemic compound of Example 51 was separated using a Chiralpak IB (250×20 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (90:10) as the mobile phase to provide the compound of Example 51A (Fraction I (−)) and the compound of Example 51B (Fraction II (+)).
Example 51A
Synthesis of (−)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 51A was produced as described in Example 51. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.74 (s, 1H), 7.65 (s, 1H), 7.56 (s, 1H), 7.48 (d, 1H), 7.34-7.28 (m, 2H), 7.25-7.20 (m, 1H), 7.18 (d, 1H), 7.08 (d, 1H), 6.93 (s, 1H), 5.20-5.18 (m, 1H), 4.30-4.20 (m, 2H), 3.82 (s, 3H), 3.14 (s, 3H), 2.22 (s, 3H); Mass (ESI): 463.5 [M+1]; LC-MS: 463.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=20.65 min (Chiralpak-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −161.36 (c 0.25, DCM).
Example 51B
Synthesis of (+)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 51B was produced as described in Example 51. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.74 (s, 1H), 7.65 (s, 1H), 7.56 (s, 1H), 7.48 (d, 1H), 7.34-7.28 (m, 2H), 7.25-7.20 (m, 1H), 7.18 (d, 1H), 7.08 (d, 1H), 6.93 (s, 1H), 5.20-5.18 (m, 1H), 4.30-4.20 (m, 2H), 3.82 (s, 3H), 3.14 (s, 3H), 2.22 (s, 3H); Mass (ESI): 463.4 [M+1]; LC-MS: 463.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=24.50 min (Chiralpak-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +176.78 (c 0.25, DCM).
Example 52
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (23 mg, 0.02 mmol) and Xantphos (43 mg, 0.07 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated to 110° C. and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.50 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (204 mg, 1.00 mmol), cesium carboate (228 mg, 0.70 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 110° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with a saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 0-5% MeOH:CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (30 mg, 16%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.73 (d, 2H), 7.50 (s, 1H), 7.20 (s, 2H), 7.00 (s, 1H), 4.01-3.99 (m, 2H), 3.83 (s, 3H), 3.68-3.59 (m, 1H), 3.19 (s, 3H), 2.21 (s, 3H), 1.31 (d, 3H); Mass (ESI): 367.3 [M+1]; LC-MS: 366.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.97 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC HSS-T-3, 100×2.1 mm, 1.8μ); RT 3.22 min. ACN: 0.025% TFA (Aq); 0.30 ml/min; TLC: 5% MeOH:CH2Cl2 (Rf: 0.2).
Example 53
Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine




Synthesis of 2-((3-methoxy-4-(4-methyl-M-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (50 mg, 0.31 mmol) in N-methyl-2-pyrrolidinone (1.3 mL) was added 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (69 mg, 0.34 mmol) and 4N HCl in 1, 4-dioxane (0.3 mL). The reaction mixture was heated to 120° C. and stirred for 16 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with a saturated sodium bicarbonate solution (20 mL), filtered, washed with water (2×5 mL) and dried in vacuo. The crude material was washed successively with ether (2×1 mL) and n-pentane (2×1 mL) to afford 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (70 mg, 69%) as a brown solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.00 (br s, 1H), 8.80 (s, 1H), 7.89 (s, 1H), 7.59 (s, 1H), 7.40 (s, 1H), 7.27 (d, 1H), 7.09 (d, 1H), 6.95 (s, 1H), 6.71-6.68 (m, 1H), 3.73 (s, 3H), 2.87 (s, 3H), 2.12 (s, 3H); LC-MS: 327.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.53 min. 5 mM Aq NH4OAc: ACN; 0.80 ml/min); TLC: 80% EtOAc:hexanes (Rf: 0.1).
Synthesis of 1-(2-chloro-4-fluorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (150 mg, 0.46 mmol) in CH3CN (3 mL) was added cesium carbonate (300 mg, 0.92 mmol) and stirred for 15 min. 2-Bromo-1-(2-chloro-4-fluorophenyl) ethan-1-one (127 mg, 0.50 mmol) was added at 0° C. and the reaction mixture was stirred for 4 h. After consumption of the starting material (monitored by TLC), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chloro-4-fluorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (170 mg, 74%) as a yellow solid. TLC: 10% MeOH:CH2Cl2 (Rf: 0.4).
Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine
To a stirred solution of 1-(2-chloro-4-fluorophenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (120 mg, 0.24 mmol) in 1, 2-dichloroethane (3 mL) was added trifluoroacetic acid (0.24 mmol) and sodium triacetoxyborohydride (103 mg, 0.48 mmol) and the reaction mixture was stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with 1N sodium hydroxide (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 0-5% MeOH:CH2Cl2 to afford 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (30 mg, 26%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 1H), 7.65 (s, 1H), 7.59 (s, 1H), 7.31 (d, 1H), 7.24 (d, 1H), 7.19 (d, 1H), 7.10-7.06 (m, 2H), 6.92-6.90 (m, 1H), 5.19-5.17 (m, 1H), 4.30-4.20 (m, 2H), 3.82 (s, 3H), 3.14 (s, 3H), 2.20 (s, 3H); Mass (ESI): 481.4 [M+1]; LC-MS: 480.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.49 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; TLC: 80% EtOAc:hexanes (Rf: 0.4).
Example 54
Synthesis of 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (15 mg, 0.01 mmol) and Xantphos (29 mg, 0.05 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(4-fluoro-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.34 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (138 mg, 0.68 mmol), cesium carbonate (155 mg, 0.47 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with an aqueous sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 30% EtOAc:hexanes to afford 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 12%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 1H), 7.61 (s, 1H), 7.54 (s, 1H), 7.28-7.18 (m, 2H), 7.04-6.90 (m, 4H), 4.99-6.90 (m, 1H), 4.24-4.10 (m, 2H), 3.82 (s, 3H), 3.09 (s, 3H), 2.41 (s, 3H), 2.20 (s, 3H); Mass (ESI): 461.4 [M+1]; LC-MS: 461.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.75 min. 5 μm NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5 μm); RT 10.86 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; TLC: 30% EtOAc:hexanes (Rf: 0.4).
Example 55
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (14 mg, 0.01 mmol) and Xantphos (26 mg, 0.04 mmol) in 1, 4-dioxane (0.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture 2-chloro-8-methyl-7-(2-(trifluoromethyl)phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.30 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (123 mg, 0.60 mmol), cesium carbonate (138 mg, 0.42 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of staring material (monitored by TLC and LCMS), the reaction was diluted with an aqueous sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 80% EtOAc:hexanes to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (40 mg, 26%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.79 (d, 1H), 7.72 (s, 1H), 7.67-7.60 (m, 3H), 7.54 (t, 1H), 7.34 (d, 1H), 7.25 (d, 1H), 7.19-7.17 (m, 1H), 6.95 (s, 1H), 5.04-4.99 (m, 1H), 4.31-4.29 (m, 1H), 4.11-4.09 (m, 1H), 3.82 (s, 3H), 3.09 (s, 3H), 2.20 (s, 3H); Mass (ESI): 497.3 [M+1]; LC-MS: 497.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.94 min. 5 mM NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5 μm); RT 11.53 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; TLC: 50% EtOAc:hexanes (Rf: 0.4).
Racemic compound of Example 55 was separated using a Chiralpak IA (250×20 mm, 5 μm (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (85:15) as the mobile phase) to provide the compound of Example 55A (Fraction I (−)) and the compound of Example 55B (Fraction II (+)).
Example 55A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 55A was produced as described in Example 55. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.80 (d, 1H), 7.74 (s, 1H), 7.65-7.60 (m, 3H), 7.52 (t, 1H), 7.33 (d, 1H), 7.23 (d, 1H), 7.19-7.17 (m, 1H), 6.98 (s, 1H), 5.01-4.99 (m, 1H), 4.31-4.28 (m, 1H), 4.11-4.08 (m, 1H), 3.81 (s, 3H), 3.08 (s, 3H), 2.21 (s, 3H); Mass (ESI): 497.5 [M+1]; LC-MS: 497.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.96 min. 5 mM NH4OAc: ACN; 0.80 ml/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5 μm); RT 11.47 min. ACN: 5 mM Aq NH4OAc % TFA (Aq); 1.0 ml/min; Chiral HPLC: RT=14.24 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −105.80 (c 0.25, DCM).
Example 55B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 55B was produced as described in Example 55. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.80 (d, 1H), 7.74 (s, 1H), 7.65-7.60 (m, 3H), 7.52 (t, 1H), 7.33 (d, 1H), 7.23 (d, 1H), 7.19-7.17 (m, 1H), 6.98 (s, 1H), 5.01-4.99 (m, 1H), 4.31-4.28 (m, 1H), 4.11-4.08 (m, 1H), 3.81 (s, 3H), 3.08 (s, 3H), 2.21 (s, 3H); Mass (ESI): 497.4 [M+1]; LC-MS: 497.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.96 min. 5 mM NH4OAc: ACN; 0.80 ml/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5 μm); RT 11.52 min. ACN: 5 mM Aq NH4OAc % TFA (Aq); 1.0 ml/min; Chiral HPLC: RT=17.95 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +95.61 (c 0.25, DCM).
Example 56
Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (77 mg, 0.13 mmol) in 1, 4-dioxane (1.25 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.89 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (362 mg, 1.79 mmol), cesium carbonate (408 mg, 1.25 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was filtered. The filtrate was washed with water (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 80% EtOAc:hexanes to afford N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 45%) as a pale yellow solid. UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% TFA (Aq); 0.50 ml/min, TLC: 50% EtOAc:hexanes (Rf: 0.7).
Racemic compound of Example 56 was separated using a Chiralpak IA (250×20 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as the mobile phase) to provide the compound of Example 56A (Fraction I (+)) and the compound of Example 56B (Fraction II (−)).
Example 56A
Synthesis of (+)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 56A was produced as described in Example 56. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.90-7.88 (m, 1H), 7.59 (s, 1H), 7.50-7.40 (m, 4H), 7.29-7.26 (m, 2H), 7.10 (t, 2H), 4.71-4.69 (m, 1H), 4.22-4.17 (m, 2H), 3.11 (s, 3H), 2.55 (s, 3H); Mass (ESI): 446.3 [M+1]; LC-MS: 446.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.85 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=23.95 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +142.43 (c 0.25, DCM).
Example 56B
Synthesis of (−)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 56B was produced as described in Example 56. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.38 (m, 1H), 7.91-7.89 (m, 1H), 7.59 (s, 1H), 7.50-7.40 (m, 4H), 7.29-7.26 (m, 2H), 7.10 (t, 2H), 4.71-4.69 (m, 1H), 4.22-4.17 (m, 2H), 3.11 (s, 3H), 2.55 (s, 3H); Mass (ESI): 446.3 [M+1]; LC-MS: 446.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=26.52 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −134.38 (c 0.25, DCM).
Example 57
Synthesis of 7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (63 mg, 0.10 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 7-benzyl-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.72 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (293 mg, 1.45 mmol) and cesium carbonate (330 mg, 1.01 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2-5% MeOH:CH2Cl2 to afford 7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (95 mg, 29%) as a yellow solid. LC-MS: 442.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% TFA (Aq); 0.50 ml/min. TLC: 5% MeOH:CH2Cl2 (Rf: 0.5).
Racemic compound of Example 57 was separated using a Chiralpak IA (250×20 mm, 5 μm (70 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (75:25) as the mobile phase) to provide the compound of Example 57A (Fraction I (+)) and the compound of Example 57B (Fraction II (−)).
Example 57A
Synthesis of (+)-7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 57A was produced as described in Example 57. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.90-7.86 (m, 1H), 7.55 (s, 1H), 7.49-7.47 (m, 2H), 7.46-7.38 (m, 2H), 7.36-7.30 (m, 2H), 7.29-7.20 (m, 3H), 4.10-4.07 (m, 1H), 3.83-3.80 (m, 1H), 3.78-3.70 (m, 1H), 3.11 (s, 3H), 3.10-3.09 (m, 1H), 2.87-2.83 (m, 1H), 2.55 (s, 3H); Mass (ESI): 442.4 [M+1]; LC-MS: 442.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.90 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=12.43 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +63.29 (c=0.25, DCM).
Example 57B
Synthesis of (−)-7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 57B was produced as described in Example 57. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.41 (d, 1H), 7.90-7.85 (m, 1H), 7.55 (s, 1H), 7.49-7.47 (m, 2H), 7.46-7.38 (m, 2H), 7.36-7.31 (m, 2H), 7.29-7.20 (m, 3H), 4.10-4.07 (m, 1H), 3.83-3.80 (m, 1H), 3.78-3.70 (m, 1H), 3.11 (s, 3H), 3.10-3.08 (m, 1H), 2.87-2.83 (m, 1H), 2.55 (s, 3H); Mass (ESI): 442.4 [M+1]; LC-MS: 442.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=21.38 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −77.24 (c=0.25, DCM).
Example 58
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (40 mg, 0.09 mmol) and Xantphos (76 mg, 0.13 mmol) in 1, 4-dioxane (2.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.89 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (188 mg, 0.98 mmol), cesium carbonate (407 mg, 1.25 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 24 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine GSM-NS-570 (150 mg, 40%) as an off-white solid. LC-MS: 435.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.82 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Eclipse-XDB-C-18, 150×4.6 mm, 5μ); RT 10.86 min. ACN: 5 mM Aq NH4OAc (Aq); 1.0 ml/min; TLC: 5% MeOH:CH2Cl2 (Rf: 0.3).
Racemic compound of Example 58 was separated using a Chiralpak IA (250×20 mm, 5 μm (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (80:20) as the mobile phase to provide the compound of Example 58A (Fraction I (+)) and the compound of Example 58B (Fraction II (−)).
Example 58A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 58A was produced as described in Example 58. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.98 (m, 1H), 7.78 (s, 1H), 7.60 (s, 1H), 7.41-7.21 (m, 4H), 7.12-7.08 (m, 3H), 4.71-4.70 (m, 1H), 4.25-4.21 (m, 1H), 4.19-4.17 (m, 1H), 3.11 (s, 3H), 2.25 (s, 3H); Mass (ESI): 435.4 [M+1]; LC-MS: 435.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.79 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.57 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=23.38 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +137.53 (c 0.25, DCM).
Example 58B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 58B was produced as described in Example 58. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.98 (m, 1H), 7.78 (s, 1H), 7.60 (s, 1H), 7.41-7.21 (m, 4H), 7.12-7.08 (m, 3H), 4.71-4.70 (m, 1H), 4.25-4.21 (m, 1H), 4.19-4.17 (m, 1H), 3.11 (s, 3H), 2.25 (s, 3H); Mass (ESI): 435.4 [M+1]; LC-MS: 435.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.80 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.57 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=29.71 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −129.13 (c 0.25, DCM).
Example 59
Synthesis of 7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (63 mg, 0.10 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 7-benzyl-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.72 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (277 mg, 1.45 mmol) and cesium carbonate (330 mg, 1.01 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2-5% MeOH:CH2Cl2 to afford 7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (95 mg, 30%) as an off-white solid. UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; TLC: 5% MeOH:CH2Cl2 (Rf: 0.5).
Racemic compound of Example 59 was separated using a Chiralpak IA (250×20 mm, 5 μm (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (70:30) as the mobile phase) to provide the compound of Example 59A (Fraction I (+)) and the compound of Example 59B (Fraction II (−)).
Example 59A
Synthesis of (+)-7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 59A was produced as described in Example 59. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.95 (m, 1H), 7.74 (s, 1H), 7.52 (s, 1H), 7.38-7.20 (m, 7H), 7.07-7.05 (m, 1H), 4.09-4.06 (m, 1H), 3.82-3.80 (m, 1H), 3.74-3.70 (m, 1H), 3.10 (s, 3H), 3.09-3.07 (m, 1H), 2.90-2.86 (m, 1H), 2.23 (s, 3H); Mass (ESI): 431.4 [M+1]; LC-MS: 431.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.81 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=14.29 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D24.25: +67.32 (c=0.25, DCM).
Example 59B
Synthesis of (−)-7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 59B was produced as described in Example 59. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.95 (m, 1H), 7.74 (s, 1H), 7.52 (s, 1H), 7.38-7.20 (m, 7H), 7.07-7.05 (m, 1H), 4.09-4.06 (m, 1H), 3.82-3.80 (m, 1H), 3.74-3.70 (m, 1H), 3.10 (s, 3H), 3.09-3.07 (m, 1H), 2.90-2.86 (m, 1H), 2.23 (s, 3H); Mass (ESI): 431.4 [M+1]; LC-MS: 431.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.82 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=22.68 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D24.42: −69.34 (c=0.25, DCM).
Example 60
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (62 mg, 0.10 mmol) in 1, 4-dioxane (2.5 mL). The suspension was degassed, heated 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.72 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (290 mg, 0.14 mmol), cesium carbonate (320 mg, 1.01 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 130° C. and stirred for 36 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was concentrated in vacuo. The crude material was purified by silica gel column chromatography using 5% MeOH:CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (160 mg, 43%) as a brown liquid. LC-MS: 513.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.11 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.76 min. ACN: 0.025% TFA (Aq); 0.50 ml/min.
Racemic compound of Example 60 was separated using a Chiralpak-IA (250×4.6 mm, 5 μm (35 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 95:15) as the mobile phase) to provide the compound of Example 60A (Fraction I (−)) and the compound of Example 60B (Fraction II (+)).
Example 60A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 60A was produced as described in Example 60. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.20 (s, 1H), 7.83 (s, 1H), 7.68 (s, 1H), 7.62 (s, 1H), 7.50-7.41 (m, 2H), 7.40 (t, 1H), 7.31 (d, 1H), 7.13 (t, 2H), 7.00 (s, 1H), 5.09-5.07 (m, 1H), 4.27-4.23 (m, 1H), 4.17-4.11 (m, 1H), 3.75 (s, 3H), 3.07 (s, 3H), 2.11 (s, 3H); Mass (ESI): 513.4 [M+1]; LC-MS: 513.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.15 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=14.20 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −148.24 (c 0.25, DCM).
Example 60B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 60B was produced as described in Example 60. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.20 (s, 1H), 7.83 (s, 1H), 7.68 (s, 1H), 7.62 (s, 1H), 7.50-7.41 (m, 2H), 7.40 (t, 1H), 7.31 (d, 1H), 7.13 (t, 2H), 7.00 (s, 1H), 5.09-5.07 (m, 1H), 4.27-4.23 (m, 1H), 4.17-4.11 (m, 1H), 3.75 (s, 3H), 3.07 (s, 3H), 2.11 (s, 3H); Mass (ESI): 513.5 [M+1]; LC-MS: 513.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.04 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=20.31 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +157.20 (c 0.25, DCM).
Example 61
Synthesis of 7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (77 mg, 0.13 mmol) in 1, 4-dioxane (1.25 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.89 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (383 mg, 1.79 mmol) and cesium carbonate (408 mg, 1.25 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 1-5% MeOH:CH2Cl2 to afford 7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 29%) as an off-white solid. UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% TFA (Aq); 0.50 ml/min.
Racemic compound of Example 61 was separated using a Chiralpak-ADH (250×20 mm, 5 μm (25 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as the mobile phase) to provide the compound of Example 61A (Fraction I (−)) and the compound of Example 61B (Fraction II (+)).
Example 61A
Synthesis of (−)-7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 61A was produced as described in Example 61. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.90-7.69 (m, 1H), 7.59 (s, 1H), 7.47 (s, 1H), 7.40 (d, 1H), 7.29-7.22 (m, 4H), 7.11 (t, 2H), 4.70-4.69 (m, 1H), 4.21-4.10 (m, 2H), 3.84 (s, 3H), 3.12 (s, 3H), 2.51 (s, 3H); Mass (ESI): 458.5 [M+1]; LC-MS: 458.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.96 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=15.45 min (CHIRALPAK AD-H (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B: 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −159.72 (c=0.25, DCM); TLC: 50% EtOAc:hexanes (Rf: 0.7).
Example 61B
Synthesis of (+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 61B was produced as described in Example 61. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.90-7.69 (m, 1H), 7.59 (s, 1H), 7.47 (s, 1H), 7.40 (d, 1H), 7.29-7.22 (m, 4H), 7.11 (t, 2H), 4.70-4.69 (m, 1H), 4.21-4.10 (m, 2H), 3.84 (s, 3H), 3.12 (s, 3H), 2.51 (s, 3H); Mass (ESI): 458.5 [M+1]; LC-MS: 458.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.96 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% TFA (Aq); 0.50 ml/min; Chiral HPLC: RT=29.19 min (CHIRALPAK AD-H (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B: 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +166.08 (c=0.25, DCM); TLC: 50% EtOAc:hexanes (Rf: 0.7).
Example 62
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (63 mg, 0.10 mmol) in 1, 4-dioxane (1.25 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.72 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (310 mg, 1.44 mmol) and cesium carbonate (329 mg, 1.00 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 8% MeOH:CH2Cl2 to afford N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 34%) as a pale yellow solid. TLC: 50% EtOAc:hexanes (Rf: 0.7). LC-MS: 524.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.13 min. 0.05% Aq TFA: ACN; 0.80 ml/min).
Racemic compound of Example 62 was separated using a Chiralpak IA (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (80:20); (A:B: 85:15) as the mobile phase) to provide the compound of Example 62A (Fraction I (−)) and the compound of Example 62B (Fraction II (+)).
Example 62A
Synthesis of (−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 62A was produced as described in Example 62. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.69 (s, 1H), 7.59 (s, 1H), 7.48-7.38 (m, 4H), 7.35-7.30 (m, 1H), 7.29-7.25 (m, 2H), 7.18 (d, 1H), 5.10-5.08 (m, 1H), 4.30-4.18 (m, 2H), 3.87 (s, 3H), 3.15 (s, 3H), 2.53 (s, 3H); Mass (ESI): 524.5 [M+1]; LC-MS: 524.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.20 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Eclipse-XDB-C-18, 150×4.6 mm, 5 μm); RT 12.46 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; Chiral HPLC: RT=14.91 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −166.54 (c=0.25, DCM).
Example 62B
Synthesis of (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 62B was produced as described in Example 62. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30 (d, 1H), 7.69 (s, 1H), 7.59 (s, 1H), 7.48-7.38 (m, 4H), 7.35-7.25 (m, 3H), 7.18 (d, 1H), 5.10-5.08 (m, 1H), 4.30-4.18 (m, 2H), 3.87 (s, 3H), 3.15 (s, 3H), 2.53 (s, 3H); Mass (ESI): 524.4 [M+1]; LC-MS: 524.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.19 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Eclipse-XDB-C-18, 150×4.6 mm, 5 μm); RT 12.46 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; Chiral HPLC: RT=17.23 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +167.80 (c=0.25, DCM).
Example 63
Synthesis of 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (360 mg, 1.68 mmol) and cesium carbonate (383 mg, 1.17 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was filtered, washed with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 1-5% MeOH:CH2Cl2 to afford 7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 30%) as an off-white solid. TLC: 40% EtOAc:hexanes (Rf: 0.2). LC-MS: 476.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.89 min. 0.05% Aq TFA; ACN; 0.80 ml/min: HPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% Aq TFA; 0.5 ml/min.
Racemic compound of Example 63 was separated using a Chiralpak ADH (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: EtOH (70:30) as the mobile phase to provide the compound of Example 63A (Fraction I (−)) and the compound of Example 63B (Fraction II (+)).
Example 63A
Synthesis of (−)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 63A was produced as described in Example 63. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.70 (s, 1H), 7.60 (s, 1H), 7.48 (s, 1H), 7.43-7.40 (m, 1H), 7.30-7.23 (m, 2H), 7.18-7.05 (m, 2H), 6.98-6.95 (m, 1H), 5.02-5.00 (m, 1H), 4.24 (d, 2H), 3.86 (s, 3H), 3.20 (s, 3H), 2.53 (s, 3H); Mass (ESI): 476.4 [M+1]; LC-MS: 476.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=17.34 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −188.14 (c=0.25, DCM).
Example 63B
Synthesis of (+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 63B was produced as described in Example 63. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.70 (s, 1H), 7.60 (s, 1H), 7.48 (s, 1H), 7.43-7.40 (m, 1H), 7.30-7.23 (m, 2H), 7.18-7.05 (m, 2H), 6.98-6.95 (m, 1H), 5.02-5.00 (m, 1H), 4.24 (d, 2H), 3.86 (s, 3H), 3.20 (s, 3H), 2.53 (s, 3H); Mass (ESI): 476.4 [M+1]; LC-MS: 476.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=18.96 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +180.92 (c=0.25, DCM).
Example 64
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (63 mg, 0.10 mmol) in 1, 4-dioxane (1.25 mL). The suspension was degassed, heated to 130° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.72 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (276 mg, 1.44 mmol) and cesium carbonate (330 mg, 1.01 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 130° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was filtered. The filtrate was washed with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 90% EtOAc:hexanes to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (110 mg, 25%) as an off-white solid. TLC: 70% EtOAc:hexanes (Rf: 0.5). HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% Aq TFA; 0.5 ml/min.
Racemic compound of Example 64 was separated using a Chiralpak IA (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as the mobile phase) to provide the compound of Example 64A (Fraction I (+)) and the compound of Example 64B (Fraction II (−)).
Example 64A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 64A was produced as described in Example 64. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.77 (s, 1H), 7.61 (s, 1H), 7.49-7.40 (m, 3H), 7.38-7.31 (m, 2H), 7.27 (d, 1H), 7.09 (s, 1H), 5.10-5.08 (m, 1H), 4.26-4.22 (m, 1H), 4.20-4.18 (m, 1H), 3.12 (s, 3H), 2.22 (s, 3H); Mass (ESI): 501.4 [M+1]; LC-MS: 501.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.13 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.80 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=15.71 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +131.53 (c=0.25, DCM).
Example 64B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 64B was produced as described in Example 64. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.77 (s, 1H), 7.61 (s, 1H), 7.49-7.40 (m, 3H), 7.38-7.31 (m, 2H), 7.27 (d, 1H), 7.09 (s, 1H), 5.10-5.08 (m, 1H), 4.26-4.22 (m, 1H), 4.20-4.18 (m, 1H), 3.12 (s, 3H), 2.22 (s, 3H); Mass (ESI): 501.4 [M+1]; LC-MS: 501.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.13 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.80 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=20.03 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −115.52 (c=0.25, DCM).
Example 65
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine
To a dry vial was added a suspension of Pd2(dba)3 (14 mg, 0.01 mmol) and Xantphos (27 mg, 0.04 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (90 mg, 0.30 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (123 mg, 0.60 mmol) and cesium carbonate (137 mg, 0.42 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 32 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 5% MeOH:CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine (10 mg, 8%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 2H), 7.59 (s, 1H), 7.22-7.19 (m, 2H), 6.99 (br s, 1H), 4.29-4.26 (m, 1H), 3.99-3.91 (m, 2H), 3.82 (s, 3H), 3.21 (s, 3H), 2.66-2.57 (m, 2H), 2.21 (s, 3H); Mass (ESI): 435.4 [M+1]; LC-MS: 435.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.50 min. 0.05% Aq TFA: ACN; 0.8 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.43 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 66
Synthesis of 7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (1 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (340 mg, 1.68 mmol) and cesium carbonate (383 mg, 1.17 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was filtered. The filtrate was washed with water (10 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 1% MeOH:CH2Cl2 to afford 7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 31%) as an off-white solid. HPLC (column; Eclipse-XDB C-18, 150×4.6 mm, 5 μm); RT 12.11 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 66 was separated using a Chiralpak IA (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 90:10) as the mobile phase) to provide the compound of Example 66A (Fraction I (+)) and the compound of Example 66B (Fraction II (−)).
Example 66A
Synthesis of (+)-7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 66A was produced as described in Example 66. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.92-7.89 (m, 1H), 7.60 (s, 1H), 7.50-7.40 (m, 4H), 7.12-7.00 (m, 2H), 6.96-6.92 (m, 1H), 5.06-5.02 (m, 1H), 4.21 (d, 2H), 3.17 (s, 3H), 2.58 (s, 3H); Mass (ESI): 464.4 [M+1]; LC-MS: 464.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.96 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=26.61 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +172.89 (c=0.25, DCM).
Example 66B
Synthesis of (−)-7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 66B was produced as described in Example 66. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.48 (d, 1H), 7.90-7.88 (m, 1H), 7.60 (s, 1H), 7.50-7.40 (m, 4H), 7.19-6.90 (m, 2H), 6.96-6.90 (m, 1H), 5.06-5.02 (m, 1H), 4.22 (d, 2H), 3.15 (s, 3H), 2.59 (s, 3H); Mass (ESI): 464.4 [M+1]; LC-MS: 464.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC RT=31.53 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −158.67 (c=0.25, DCM).
Example 67
Synthesis of 7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (69 mg, 0.12 mmol) in 1, 4-dioxane (0.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(2-chlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.80 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl)aniline (168 mg, 0.88 mmol) and cesium carbonate (364 mg, 1.12 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 39%) as an off-white solid. LC-MS: 451.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 67 was separated using a Chiralpak IB (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 90:10) as the mobile phase) to provide the compound of Example 67A (Fraction I (+)) and the compound of Example 67B (Fraction II (−)).
Example 67A
Synthesis of (+)-7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 67A was produced as described in Example 67. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.79 (s, 1H), 7.59 (s, 1H), 7.51 (d, 1H), 7.44-7.40 (m, 1H), 7.38-7.30 (m, 3H), 7.10-7.05 (m, 2H), 5.20-5.18 (m, 1H), 4.32-4.22 (m, 2H), 3.14 (s, 3H), 2.23 (s, 3H); Mass (ESI): 451.4 [M+1]; LC-MS: 451.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 5 mM Aq TFA; 0.5 ml/min; Chiral HPLC: RT=14.36 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +176.20 (c=0.25, DCM).
Example 67B
Synthesis of (−)-7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 67B was produced as described in Example 67. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.79 (s, 1H), 7.59 (s, 1H), 7.51 (d, 1H), 7.44-7.40 (m, 1H), 7.38-7.30 (m, 3H), 7.10-7.05 (m, 2H), 5.20-5.18 (m, 1H), 4.32-4.22 (m, 2H), 3.14 (s, 3H), 2.23 (s, 3H); Mass (ESI): 451.4 [M+1]; LC-MS: 451.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=16.22 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: 153.56 (c=0.25, DCM).
Example 68
Synthesis of 7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (78 mg, 0.13 mmol) in 1, 4-dioxane (0.25 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 7-benzyl-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.90 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (212 mg, 0.99 mmol) and cesium carbonate (409 mg, 1.26 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 120° C. and stirred for 48 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 2% MeOH:CH2Cl2 to afford 7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 36%) as an off-white solid. TLC: 5% MeOH:CH2Cl2 (Rf: 0.3). LC-MS: 454.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.89 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 ml/min.
Racemic compound of Example 68 was separated using a Chiralpak IB (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 90:10) as the mobile phase) to provide the compound of Example 68A (Fraction I (+)) and the compound of Example 68B (Fraction II (−)).
Example 68A
Synthesis of (+)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 68A was produced as described in Example 68. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.69 (s, 1H), 7.53 (s, 1H), 7.47 (s, 1H), 7.41 (d, 1H), 7.36-7.20 (m, 7H), 4.09 (d, 1H), 3.85 (s, 3H), 3.84-3.80 (m, 1H), 3.77-3.70 (m, 1H), 3.13 (s, 3H), 3.10-3.08 (m, 1H), 2.90-2.83 (m, 1H), 2.53 (s, 3H); Mass (ESI): 454.5 [M+1]; LC-MS: 454.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=18.03 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +80.17 (c=0.25, DCM).
Example 68B
Synthesis of (−)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 68B was produced as described in Example 68. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.69 (s, 1H), 7.53 (s, 1H), 7.47 (s, 1H), 7.41 (d, 1H), 7.36-7.20 (m, 7H), 4.09 (d, 1H), 3.85 (s, 3H), 3.84-3.80 (m, 1H), 3.77-3.70 (m, 1H), 3.13 (s, 3H), 3.10-3.08 (m, 1H), 2.90-2.83 (m, 1H), 2.53 (s, 3H); Mass (ESI): 454.5 [M+1]; LC-MS: 454.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=19.97 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −58.54 (c=0.25, DCM).
Example 69
Synthesis of 7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (72 mg, 0.12 mmol) in 1, 4-dioxane (2.5 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (160 mg, 0.84 mmol) and cesium carbonate (382 mg, 1.10 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 130° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 8% MeOH:CH2Cl2 to afford 7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (220 mg, 58%) as a colorless oil. LC-MS: 453.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.84 min. 5 Mm Aq NH4OAc: ACN; 0.80 ml/min); HPLC (column; Eclipse-XDB C-18, 150×4.6 mm, 5 μm); RT 10.95 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min.
Racemic compound of Example 69 was separated using a Chiralpak IA (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as the mobile phase) to provide the compound of Example 69A (Fraction I (+)) and the compound of Example 69B (Fraction II (−)).
Example 69A
Synthesis of (+)-7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 69A was produced as described in Example 69. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.76 (s, 1H), 7.60 (s, 1H), 7.42 (d, 1H), 7.35 (t, 1H), 7.18-7.01 (m, 3H), 7.00-6.96 (m, 1H), 5.07-5.05 (m, 1H), 4.23 (d, 2H), 3.17 (s, 3H), 2.25 (s, 3H); Mass (ESI): 453.4 [M+1]; LC-MS: 453.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.81 min. 5 mM Aq NH4OAc: ACN; 0.80 ml/min); HPLC (column; Eclipse-XDB C-18, 150×4.6 mm, 5 μm); RT 10.93 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; Chiral HPLC: RT=16.14 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +170.03 (c=0.25, DCM).
Example 69B
Synthesis of (−)-7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 69B was produced as described in Example 69. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.76 (s, 1H), 7.60 (s, 1H), 7.42 (d, 1H), 7.35 (t, 1H), 7.18-7.01 (m, 3H), 7.00-6.96 (m, 1H), 5.07-5.05 (m, 1H), 4.23 (d, 2H), 3.17 (s, 3H), 2.25 (s, 3H); Mass (ESI): 453.4 [M+1]; LC-MS: 453.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.82 min. 5 mM Aq NH4OAc: ACN; 0.80 ml/min); HPLC (column; Eclipse-XDB C-18, 150×4.6 mm, 5 μm); RT 11.01 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; Chiral HPLC: RT=32.30 min (CHIRALPAK-IA (150×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −140.54 (c=0.25, DCM).
Example 70
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (70 mg, 0.12 mmol) in 1, 4-dioxane (1.3 mL). The suspension was degassed, heated to 120° C. and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (266 mg, 0.80 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (346 mg, 1.61 mmol), cesium carbonate (367 mg, 1.13 mmol) in 1, 4-dioxane (1.3 mL) was degassed and the catalyst premix was added. The reaction mixture was heated to 130° C. and stirred for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was filtered and the filtrate was washed with water (20 mL). The organic layer was separated, dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by silica gel column chromatography using 90% EtOAc:hexane to afford N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 29%) as a yellow solid. LC-MS: 508.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.14 min. 0.05% Aq TFA:ACN; 0.80 ml/min); TLC: 70% EtOAc:hexane (Rf: 0.6).
Racemic compound of Example 70 was separated using a Chiralpak-AD-H (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as the mobile phase) to provide the compound of Example 70A (Fraction I (−)) and the compound of Example 70B (Fraction II (+)).
Example 70A
Synthesis of (−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 70A was produced as described in Example 70. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.82 (d, 1H), 7.70 (s, 1H), 7.68 (s, 2H), 7.54 (t, 1H), 7.46 (s, 1H), 7.40 (d, 1H), 7.35 (d, 1H), 7.29-7.27 (m, 2H), 5.10 (br s, 1H), 4.30 (d, 1H), 4.12 (d, 1H), 3.88 (s, 3H), 3.10 (s, 3H), 2.52 (s, 3H); Mass (ESI): 508.5 [M+1]; LC-MS: 508.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.18 min. 0.05% Aq TFA:ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=9.92 min (CHIRALPAK-AD H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −117.74 (c 0.25, DCM).
Example 70B
Synthesis of (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 70B was produced as described in Example 70. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.82 (d, 1H), 7.70 (s, 1H), 7.68 (s, 2H), 7.54 (t, 1H), 7.46 (s, 1H), 7.40 (d, 1H), 7.35 (d, 1H), 7.29-7.27 (m, 2H), 5.10 (br s, 1H), 4.30 (d, 1H), 4.12 (d, 1H), 3.88 (s, 3H), 3.10 (s, 3H), 2.52 (s, 3H); Mass (ESI): 508.5 [M+1]; LC-MS: 508.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.18 min. 0.05% Aq TFA:ACN; 0.80 ml/min); HPLC (column; Acquity-UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: RT=15.06 min (CHIRALPAK-AD H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +125.23 (c 0.25, DCM).
Example 71
Synthesis of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-difluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (10 mL) under an argon atmosphere were added cesium carbonate (2 g, 6.28 mmol) at 0° C. After stirring 5 min, 2-bromo-1-(2, 4-difluorophenyl) ethan-1-one (812 mg, 3.46 mmol) was added at 0° C. and stirred for 2 h. After consumption of the starting material (monitored by TLC), water (20 mL) was added to the reaction and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude compound was purified by column chromatography using 15-20% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-difluorophenyl) ethan-1-one (620 mg, 63%) an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.85 (s, 1H), 7.70-7.67 (m, 1H), 7.39 (s, 1H), 7.30 (t, 1H), 7.19 (t, 1H), 4.15 (d AB q, 1H), 4.08 (d AB q, 1H), 2.80 (s, 3H); LC-MS: 313.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.43 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-difluorophenyl) ethan-1-one (600 mg, 1.91 mmol) in 1, 2-dichloroethane (12 mL) under an argon atmosphere were added sodium triacetoxyborohydride (812 mg, 3.83 mmol) and trifluoroacetic acid (147 mL, 1.91 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was basified with a 1N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude compound was purified by column chromatography using 10-15% EtOAc:hexanes to afford 2-chloro-7-(2,4-difluorophenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (500 mg, 87%) as pale yellow solid.
1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 6.99-6.81 (m, 3H), 4.92-4.90 (m, 1H), 4.24-4.20 (m, 2H), 3.10 (s, 3H); LC-MS: 298.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.20 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Example 72
Synthesis of 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1 g, 6.28 mmol) in CH3CN (10 mL) under an argon atmosphere were added 2-bromo-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one (2 g, 6.91 mmol) and cesium carbonate (4 g, 12.57 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was recrystallized from CH2Cl2: pentane (1:1, 2×10 mL) to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one (1.45 g, 63%) as an off-white solid.
1H-NMR (DMSO-d6, 500 MHz): δ 8.24-8.22 (m, 1H), 7.95 (s, 1H), 7.89-7.86 (m, 1H), 7.80 (d, 1H), 7.68 (br s, 1H), 4.33-4.29 (m, 1H), 4.14-4.11 (m, 1H), 2.73 (s, 3H); LCMS: 379.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.76 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one (1.4 g, 3.68 mmol) in 1, 2-dichloroethane (10 mL) under an argon atmosphere was added sodium triacetoxyborohydride (1.6 g, 7.73 mmol) followed by trifluoroacetic acid (281 mL, 3.68 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (800 mg, 58%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.88-7.80 (m, 1H), 7.23 (s, 1H), 5.31-5.29 (m, 1H), 4.39-4.30 (m, 2H), 3.01 (s, 3H); LCMS: 365.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.84 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 25% EtOAc:hexanes (Rf: 0.5).
Example 73
Synthesis of 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(5-chloro-2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 5-chloro-2-(trifluoromethyl) benzoic acid (4 g, 17.85 mmol) in CH2Cl2 (100 mL) under an argon atmosphere was added oxalyl chloride (2 mL, 19.64 mmol) and DMF (0.2 mL) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of acid (monitored by TLC), the volatile components were evaporated in vacuo, the obtained residue was dissolved in ether and a CH2N2 in ether solution was added at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 48% Aq HBr solution (40 mL) at 0° C. and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with water (800 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were washed with a sodium bicarbonate solution (50 mL), water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-bromo-1-(5-chloro-2-(trifluoromethyl) phenyl) ethan-1-one (5 g, 93%) as a pale yellow liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.79 (d, 1H), 7.59 (d, 1H), 7.49 (s, 1H), 4.33 (s, 2H); LCMS: 301 (M-2); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.86 min. 5 mM Aq NH4OAc: ACN; 0.8 mL/min); TLC: 20% EtOAc:hexanes (Rf: 0.7).
Synthesis of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2.7 g, 16.98 mmol) in CH3CN (110 mL) under an argon atmosphere was added cesium carbonate (16 g, 33.96 mmol) at 0° C. After stirring 5 min, 2-bromo-1-(5-chloro-2-(trifluoromethyl) phenyl) ethan-1-one (6.4 g, 21.22 mmol) was added and stirred for 30 min. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with hexane (2×10 mL) to afford 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (5.5 g, 86%) as pale yellow solid. LCMS: 380.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.29 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)ethan-1-ol)
To a stirred solution of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (5.5 g, 14.43 mmol) in MeOH (110 mL) under an argon atmosphere was added sodium borohydride (1.1 g, 28.86 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with cold water and volatile components were evaporated in vacuo, saturated ammonium chloride solution (100 mL) was added and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl) oxy) ethan-1-ol) (5.5 g) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.93 (s, 1H), 7.77 (d, 1H), 7.70-7.60 (m, 2H), 7.50-7.43 (m, 1H), 6.13 (d, 1H), 5.27-5.20 (m, 1H), 4.11-4.10 (m, 2H), 2.88 (d, 3H); LCMS: 383.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.23 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl) oxy) ethan-1-ol) (5.3 g, 14.00 mmol) in CH2Cl2 (100 mL) under an argon atmosphere was added triethylamine (6.82 mL, 49.00 mmol) followed by mesyl chloride (2.2 mL, 28.00 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2.5 h. After consumption of the starting material (monitored by TLC), the reaction was neutralized with a 5% sodium bicarbonate solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (5 g, 78%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.99 (s, 1H), 7.83 (d, 1H), 7.75-7.71 (m, 2H), 7.43-7.40 (m, 1H), 6.10 (d, 1H), 4.62-4.58 (m, 1H), 4.23-4.20 (m, 1H), 3.30 (s, 3H), 2.87 (d, 3H); LCMS: 461.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.44 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 2.49 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (900 mg, 1.95 mmol) in DMF (30 mL) under an argon atmosphere was added potassium carbonate (808 mg, 5.85 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 36 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexanes to afford 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 42%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.90-7.84 (m, 2H), 7.80 (d, 1H), 7.30 (s, 1H), 5.01-4.99 (m, 1H), 4.33-4.30 (m, 1H), 4.21-4.18 (m, 1H), 2.95 (s, 3H); LCMS: 365.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.75 min 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 2.73 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 30% EtOAc:hexanes (Rf: 0.7).
Example 74
Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (600 mg, 3.77 mmol) in CH3CN (6 mL) under an argon atmosphere were added cesium carbonate (2.4 g, 7.54 mmol) and 1-(2, 4-bis (trifluoromethyl) phenyl)-2-bromoethan-1-one (1.4 g, 4.15 mmol) at room temperature. The reaction mixture was stirred at room temperature for 3 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (500 mg, 33%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.30 (s, 2H), 8.27 (s, 1H), 7.71 (s, 1H), 7.46-7.42 (m, 1H), 5.59 (s, 2H), 2.85 (d, 3H); LCMS: 413.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.83 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Synthesis of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol
To a stirred solution of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (1.5 g, 3.63 mmol) in MeOH (15 mL) under an argon atmosphere was added sodium borohydride (201 mg, 5.44 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo, water (50 mL) was added and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 1-(2, 4-bis-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (1.1 g, 73%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 8.02 (d, 1H), 7.96 (s, 1H), 7.92 (d, 1H), 7.51 (s, 1H), 5.62-5.59 (m, 2H), 4.15-4.12 (m, 1H), 4.03 (t, 1H), 3.03 (d, 3H); LCMS: 415.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.74 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(2, 4-bis-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (1.2 g, 2.89 mmol) in CH2Cl2 (12 mL) under an argon atmosphere were added triethylamine (0.5 mL, 3.46 mmol) followed by mesyl chloride (329 mg, 2.89 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction was neutralized with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (1 g, 71%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.02 (d, 1H), 8.00-7.98 (m, 1H), 7.91 (d, 1H), 7.40 (s, 1H), 6.10-6.08 (m, 1H), 4.22-4.10 (m, 2H), 3.68 (s, 1H), 3.07 (d, 3H), 3.00 (s, 3H); LCMS: 493.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.89 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.4).
Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(2, 4-bis-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (1 g, 2.02 mmol) in DMF (10 mL) under an argon atmosphere was added potassium carbonate (419 mg, 3.04 mmol) at room temperature. The reaction mixture was heated at 110° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The reaction was diluted with cold water (50 mL) and extracted with ether (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 25%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 8.00 (s, 1H), 7.81 (d, 1H), 7.80 (s, 1H), 7.34 (d, 1H), 5.10-5.08 (m, 1H), 4.31-4.29 (m, 1H), 4.20-4.16 (m, 1H), 3.08 (s, 3H); LCMS: 397.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.20 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Example 75
Synthesis of 2-chloro-7-(4-methoxy-2-methylphenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1 g, 6.28 mmol) in CH3CN (20 mL) under an argon atmosphere was added cesium carbonate (1.68 g, 6.92 mmol) at 0° C. After stirring 5 min, 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one (1.7 g, 6.92 mmol) was added to the reaction mixture and stirred for 4 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (100 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15-20% EtOAc:hexane to afford 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one (1.3 g, 65%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.92 (d, 1H), 7.58 (s, 1H), 7.49-7.43 (m, 1H), 6.90 (s, 1H), 6.89-6.87 (m, 1H), 5.50 (s, 2H), 3.83 (s, 3H), 2.86 (d, 3H), 2.45 (s, 3H); LCMS: 322.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.92 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-methoxy-2-methylphenyl) ethan-1-ol
To a stirred solution of 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one (1.1 g, 3.40 mmol) in MeOH (20 mL) under an argon atmosphere was added sodium borohydride (194 mg, 5.14 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), volatile components were evaporated, water (50 mL) was added and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20-40% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-methoxy-2-methylphenyl) ethan-1-ol (800 mg, 73%) as an off-white solid. TLC: 40% EtOAc:hexanes (Rf: 0.2).
Synthesis of 2-chloro-7-(4-methoxy-2-methylphenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-methoxy-2-methylphenyl) ethan-1-ol (50 mg, 0.15 mmol) in CH2Cl2 (3 mL) under an argon atmosphere were added triethylamine (0.04 mL, 0.31 mmol) and triflic anhydride (55 mg, 0.19 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of the starting material (monitored by TLC), the reaction was basified with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexane to afford 2-chloro-7-(4-methoxy-2-methylphenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (14 mg, 30%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 6.90 (d, 1H), 6.79-6.73 (m, 2H), 4.80 (t, 1H), 4.20 (d, 1H), 4.09 (d, 1H), 3.80 (s, 3H), 3.01 (s, 3H), 2.35 (s, 3H); LCMS: 306.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.78 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Example 76
Synthesis of 2-chloro-7-(4-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (600 mg, 3.77 mmol) in CH3CN (6 mL) under an argon atmosphere were added cesium carbonate (2.4 g, 7.54 mmol) and 2-bromo-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (1.1 g, 4.15 mmol) at room temperature. The reaction mixture was stirred at room temperature for 3 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (500 mg, 36%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.56-7.50 (m, 3H), 7.40 (t, 1H), 5.75 (br s, 1H), 5.05 (s, 2H), 3.09 (d, 3H); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (500 mg, 1.37 mmol) in MeOH (2 mL) under an argon atmosphere was added sodium borohydride (76 mg, 2.06 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), volatile components were evaporated, water (50 mL) was added and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-ol (450 mg, 89%) as an off-white solid.
1H-NMR (DMSO-d6, 400 MHz): δ 7.94-7.90 (m, 1H), 7.66-7.60 (m, 3H), 7.45-7.40 (m, 1H), 6.00 (s, 1H), 5.23-5.20 (m, 1H), 4.09-4.00 (m, 1H), 3.99-3.91 (m, 1H), 2.88 (d, 3H); LCMS: 366.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.97 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethan-1-ol (450 mg, 1.23 mmol) in dichloroethane (2 mL) under an argon atmosphere were added triethylamine (0.2 mL, 1.47 mmol) and mesyl chloride (140 mg, 1.23 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate (500 mg) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.79-7.74 (m, 1H), 7.50-7.45 (m, 1H), 7.45-7.40 (m, 2H), 6.10 (br s, 1H), 4.20-4.10 (m, 2H), 3.13 (s, 1H), 3.08 (d, 3H), 2.99 (s, 3H); LCMS: 444.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.69 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 2-chloro-7-(4-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-fluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate (500 mg, 1.12 mmol) in DMF (5 mL) under an argon atmosphere was added potassium carbonate (233 mg, 1.69 mmol) at room temperature. The reaction mixture was heated at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The reaction was diluted with ice cold water (50 mL) and extracted with ether (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexane to afford 2-chloro-7-(4-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (120 mg, 30%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 7.75 (s, 1H), 7.70 (d, 1H), 7.46-7.40 (m, 1H), 7.37-7.30 (m, 1H), 5.16-5.13 (m, 1H), 4.35-4.30 (m, 1H), 4.20-4.18 (m, 1H), 3.03 (s, 3H); LCMS: 348.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.66 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Example 77
Synthesis of 2-chloro-7-(2, 4-dichlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-dichlorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (10 mL) under an argon atmosphere were added 2-bromo-1-(2, 4-dichlorophenyl) ethan-1-one (927 mg, 3.45 mmol) and cesium carbonate (2 g, 6.28 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 4 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15-20% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-dichlorophenyl) ethan-1-one (650 mg, 60%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.92-7.88 (m, 2H), 7.69 (s, 1H), 7.60 (d, 1H), 7.49 (s, 1H), 4.31-4.29 (m, 1H), 4.06-4.01 (m, 1H), 2.77 (s, 3H); LCMS: 347 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.50 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 60% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(2, 4-dichlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-dichlorophenyl) ethan-1-one (650 mg, 1.87 mmol) in 1, 2-dichloroethane (15 mL) under an argon atmosphere were added sodium triacetoxyborohydride (796 mg, 3.75 mmol) followed by trifluoroacetic acid (0.14 mL, 1.87 mmol) at room temperature. The reaction mixture was stirred at room temperature for 3 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10-20% EtOAc:hexanes to afford 2-chloro-7-(2, 4-dichlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (350 mg, 56%) as an off-white solid.
1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 7.49 (s, 1H), 7.25 (s, 1H), 6.91 (d, 1H), 5.03-5.01 (m, 1H), 4.30 (d, 1H), 4.21 (d, 1H), 3.13 (s, 3H); LCMS: 332.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.78 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Example 78
Synthesis of 2-chloro-7-(2-chloro-4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-4-fluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (547 mg, 3.44 mmol) in CH3CN (5 mL) under an argon atmosphere were added cesium carbonate (2.3 g, 6.88 mmol) and 2-bromo-1-(2-chloro-4-fluorophenyl) ethan-1-one (1 g, 3.78 mmol) at 0° C. The reaction mixture was stirred at room temperature for 3 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-4-fluorophenyl) ethan-1-one (1 g) as a brown solid. LCMS: 331.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.18 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-4-fluorophenyl) ethan-1-one (1 g, 3.03 mmol) in 1, 2-dichloroethane (10 mL) under an argon atmosphere at room temperature were added sodium triacetoxyborohydride (1.2 g, 6.06 mmol) followed by trifluoroacetic acid (345 mg, 3.03 mmol). The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexanes to afford 2-chloro-7-(2-chloro-4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 32%) as a pale brown solid. 1H-NMR (CDCl3, 500 MHz): δ 7.74 (s, 1H), 7.21 (d, 1H), 7.00-6.93 (m, 2H), 5.03 (s, 1H), 4.33-4.29 (m, 1H), 4.25-4.20 (m, 1H), 3.15 (s, 3H); LCMS: 314.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.38 min. 0.05% TFA in water: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Example 79
Synthesis 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (5 mL) under an argon atmosphere was added cesium carbonate (2.2 g, 6.91 mmol) at 0° C. After stirring 10 min, 2-bromo-1-(2, 4, 5-trifluorophenyl) ethan-1-one (800 mg, 3.45 mmol) was added to the reaction mixture and stirred for 30 min. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with EtOAc:hexane (1:1, 2×20 mL) to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-one (550 mg, 55%) as a pale yellow solid used without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.88 (s, 1H), 7.70-7.63 (m, 2H), 7.53 (s, 1H), 4.17-4.10 (m, 2H), 2.81 (s, 3H); LCMS: 332.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.07 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-one (200 mg, 0.60 mmol) in MeOH (1 mL) under an argon atmosphere was added sodium borohydride (35 mg, 0.90 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with an ammonium chloride solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-ol (140 mg) as a pale yellow solid used without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.69 (s, 1H), 7.68-7.53 (m, 2H), 7.41-7.39 (m, 1H), 6.00 (s, 1H), 5.20-5.18 (m, 1H), 4.20-4.17 (m, 1H), 3.99 (t, 1H), 2.83 (d, 3H); LCMS: 334.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.86 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.2).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-ol (140 mg, 0.42 mmol) in CH2Cl2 (2 mL) under an argon atmosphere were added triethylamine (0.12 mL, 0.84 mmol) followed by mesyl chloride (0.05 mL, 0.63 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethyl methanesulfonate (200 mg) as a pale yellow solid used without further purification. 1H-NMR (CDCl3, 500 MHz): δ 7.43 (s, 1H), 7.35-7.30 (m, 1H), 7.09-7.04 (m, 1H), 6.20-6.18 (m, 1H), 6.13 (br s, 1H), 4.25-4.20 (m, 2H), 3.13 (s, 3H), 3.06-3.03 (m, 3H); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethyl methanesulfonate (200 mg, 0.48 mmol) in DMF (1 mL) under an argon atmosphere was added potassium carbonate (100 mg, 0.72 mmol) at room temperature. The reaction mixture was heated at 75° C. for 12 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 52%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.73 (s, 1H), 7.06-7.00 (m, 1H), 6.88-6.81 (m, 1H), 4.90 (s, 1H), 4.30-4.20 (m, 2H), 3.17 (s, 3H); LCMS: 316.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.34 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.7).
Example 80
Synthesis of 2-chloro-7-(4-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (250 mg, 1.57 mmol) in CH3CN (10 mL) under an argon atmosphere was added cesium carbonate (1 g, 3.14 mmol) at 0° C. After stirring 10 min, 2-bromo-1-(4-chloro-2-(trifluoromethyl) phenyl) ethan-1-one (560 mg, 1.88 mmol) was added to the reaction mixture and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (200 mg, 30%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.78 (s, 1H), 7.66 (d, 1H), 7.50 (s, 1H), 7.43 (d, 1H), 5.70 (s, 1H), 5.00 (s, 2H), 3.02 (d, 3H); TLC: 40% EtOAc:hexanes (Rf: 0.6).
Synthesis of 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol
To a stirred solution of 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (200 mg, 0.52 mmol) in MeOH (5 mL) under an argon atmosphere was added sodium borohydride (29 mg, 0.78 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo, water (20 mL) was added and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (150 mg, 75%) as a pale yellow solid used without further purification. 1H-NMR (CDCl3, 500 MHz): δ 7.80 (d, 1H), 7.67 (s, 1H), 7.61 (d, 1H), 7.50 (br s, 1H), 5.60 (br s, 1H), 5.55-5.49 (m, 1H), 4.10-4.07 (m, 1H), 4.01-3.97 (m, 1H), 3.05 (d, 3H), 2.67 (s, 1H); LCMS: 382.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.62 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.5).
Synthesis of 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (150 mg, 0.39 mmol) in CH2Cl2 (4 mL) under an argon atmosphere were added triethylamine (0.1 mL, 0.78 mmol) followed by mesyl chloride (0.05 mL, 0.58 mmol) at 0° C. The reaction mixture was warmed to room temperature for 2 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (180 mg) as pale yellow solid used without further purification. TLC: 40% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(4-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(4-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (180 mg, 0.39 mmol) in DMF (4 mL) under an argon atmosphere was added potassium carbonate (100 mg, 0.78 mmol) at room temperature. The reaction mixture was heated at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (2 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-chloro-7-(4-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (140 mg, 36%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.75 (s, 1H), 7.74 (s, 1H), 7.51 (d, 1H), 7.11 (d, 1H), 5.09-5.07 (m, 1H), 4.28-4.26 (m, 1H), 4.13-4.11 (m, 1H), 3.01 (s, 3H); TLC: 40% EtOAc:hexanes (Rf: 0.7).
Example 81
Synthesis of 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1.47 g, 9.24 mmol) in CH3CN (25 mL) under an argon atmosphere were added cesium carbonate (6 g, 18.49 mmol) and 2-bromo-1-(2-chloro-4, 5-difluorophenyl) ethan-1-one (2.5 g, 9.29 mmol) at room temperature. The reaction mixture was stirred at room temperature for 2 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (2.5 g, 78%) as an off-white solid used without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.92-7.80 (m, 3H), 7.60 (s, 1H), 4.28 (d, 1H), 4.08 (d, 1H), 2.76 (s, 3H); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol
To a stirred solution of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (2.5 g, 7.18 mmol) in MeOH (25 mL) under an argon atmosphere was added sodium borohydride (531 mg, 14.36 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (2.2 g) as an off-white solid used without further purification. LCMS: 350 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Synthesis of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (2.2 g, 6.28 mmol) in CH2Cl2 (25 mL) under an argon atmosphere were added triethylamine (1.26 g, 12.57 mmol) and mesyl chloride (859 mg, 7.54 mmol) at room temperature. The reaction mixture was stirred at room temperature for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (2.5 g) as an off-white solid used without further purification. LCMS: 428 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (2.5 g, 5.84 mmol) in DMF (25 mL) under an argon atmosphere was added potassium carbonate (1.61 g, 11.68 mmol) at room temperature. The reaction mixture was heated at 80° C. for 6 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (200 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.3 g, 68%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.90-7.87 (m, 1H), 7.79 (s, 1H), 7.18-7.10 (m, 1H), 5.19-5.17 (m, 1H), 4.30 (s, 2H), 3.01 (s, 3H); LCMS: 332.1 (M+2); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.79 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Example 82
Synthesis of 2-chloro-7-(5-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of copper bromide (4.1 g, 18.40 mmol) in EtOAc (25 mL) under an argon atmosphere was added 1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (2 g, 9.70 mmol) in chloroform (10 mL) at 80° C. and stirred for 3 h. After consumption of the starting material (monitored by TLC), the reaction was filtered, washed with CHCl3 and concentrated in vacuo to afford 2-bromo-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (2 g) as a yellow liquid used without further purification. 1H-NMR (CDCl3, 500 MHz): δ 7.79-7.72 (m, 1H), 7.31 (t, 1H), 7.20 (d, 1H), 4.32 (s, 2H); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.45 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 10% EtOAc:hexane (Rf: 0.4).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1.2 g, 7.50 mmol) in CH3CN (40 mL) under an argon atmosphere were added cesium carbonate (4.9 g, 15.10 mmol) and 2-bromo-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (2.1 g, 7.50 mmol) at room temperature. The reaction mixture was stirred at room temperature for 1.5 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (1.2 g, 47%) as an off-white solid. LCMS: 364.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.31 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-one (300 mg, 0.82 mmol) in MeOH (3 mL) under an argon atmosphere was added sodium borohydride (62 mg, 1.65 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (10 mL) and extracted with CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-ol (300 mg) as an off-white solid used without further purification. LCMS: 366.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.03 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethan-1-ol (300 mg, 0.82 mmol) in CH2Cl2 (10 mL) under an argon atmosphere were added mesylchloride (140 mg, 1.23 mmol) and triethylamine (166 mg, 1.64 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (10 mL) and extracted with CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate (405 mg) as an off-white solid used without further purification. LCMS: 444.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.28 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2-chloro-7-(5-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-fluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate (400 mg, 0.90 mmol) in DMF (4 mL) under an argon atmosphere was added potassium carbonate (248 mg, 1.80 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10-20% EtOAc:hexanes to afford 2-chloro-7-(5-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 64%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.80 (s, 1H), 7.79-7.74 (m, 1H), 7.25 (t, 1H), 6.90-6.86 (m, 1H), 5.01-5.00 (m, 1H), 4.27-4.22 (m, 1H), 4.15-4.10 (m, 1H), 3.06 (s, 3H); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.61 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 30% EtOAc:hexane (Rf: 0.6).
Example 83
Synthesis of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol




Synthesis of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a stirred solution of methyl (tert-butoxycarbonyl)-L-serinate (5 g, 22.80 mmol) in CH3CN (200 mL) under an argon atmosphere were added silver oxide (26 g, 114.15 mmol) and methyl iodide (32 g, 228.10 mmol) at room temperature. The reaction mixture was stirred at room temperature for 24 h in the absence of light. After consumption of the starting material (monitored by TLC), the reaction was filtered and the filtrate concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (2.5 g, 47%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 5.40-5.31 (m, 1H), 4.44-4.38 (m, 1H), 3.80-3.78 (m, 1H), 3.77 (s, 3H), 3.60-3.56 (m, 1H), 3.33 (s, 3H), 1.44 (s, 9H); TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of (R)-3-methoxy-2-(methylamino) propan-1-ol
To a stirred solution of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (3.8 g, 16.30 mmol) in THF (100 mL) under an argon atmosphere was added lithium aluminum hydride (1.8 g, 48.92 mmol) portion wise at 0° C. The reaction mixture was stirred at 70° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., quenched with water (2 mL), basified with a 15% sodium hydroxide solution (2 mL), water (3×2 mL) and stirred for 30 min. Then the reaction was filtered, the filtrate was dried over sodium sulfate, filtered and concentrated in vacuo to afford (R)-3-methoxy-2-(methylamino) propan-1-ol (1.7 g, 87%) as a colorless liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 3.46-3.32 (m, 2H), 3.30-3.26 (m, 3H), 3.25-3.21 (m, 4H), 2.52-2.48 (m, 1H), 2.30 (s, 3H); TLC: 50% EtOAc:hexane (Rf: 0.2).
Synthesis of 2, 4-dichloropyrimidin-5-ol
To a stirred solution of 2, 4-dichloro-5-methoxypyrimidine (20 g, 111.73 mmol) in CH2Cl2 (280 mL) under an argon atmosphere was added boron tribromide (54 mL, 558.65 mmol) drop-wise at 0° C. The reaction mixture was refluxed for 24 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., basified with a 1N sodium hydroxide solution and stirred for 1 h. Then the reaction was acidified with acetic acid (pH 2-4) and the aqueous layer extracted with 5% MeOH: CH2Cl2 (2×250 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 2, 4-dichloropyrimidin-5-ol (12 g, 64%) as pale yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.33 (s, 1H), 4.00 (s, 1H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine
To a stirred solution of 2, 4-dichloropyrimidin-5-ol (6 g, 36.50 mmol) in acetone (60 mL) under an argon atmosphere were added sodium iodide (600 mg, 3.65 mmol), potassium carbonate (13 g, 91.25 mmol) and p-methoxy benzylchloride (8.6 g, 54.87 mmol) drop-wise at room temperature. The reaction was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes (2% triethylamine) to afford 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (5 g, 48%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.63 (s, 1H), 7.41 (d, 2H), 6.99 (d, 2H), 5.29 (s, 2H), 3.75 (s, 3H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of (R)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol
To a stirred solution of (R)-3-methoxy-2-(methylamino) propan-1-ol (1.1 g, 92.20 mmol) in isopropyl alcohol (11 mL) under an argon atmosphere were added diisopropylethylamine (11 mL, 101.42 mmol) and 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (2.9 g, 101.42 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford (R)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (1.3 g, 38%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.72 (s, 1H), 7.31 (d, 2H), 6.90 (d, 2H), 4.94 (s, 2H), 4.85-4.79 (m, 1H), 3.81 (s, 3H), 3.80-3.79 (m, 2H), 3.60-3.50 (m, 2H), 3.30 (s, 3H), 3.11 (s, 3H), 2.41-2.39 (m, 1H); LCMS: 368.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.77 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.4).
Synthesis of (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol
To a stirred solution of (R)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (2.2 g, 5.99 mmol) in CH2Cl2 (34 mL) was added trifluoroacetic acid (6 mL) under an argon atmosphere at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The aqueous layer was basified with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (700 mg, 47%) as an off-white solid.
1H-NMR (CDCl3, 500 MHz): δ 7.81 (s, 1H), 4.41-4.39 (m, 1H), 3.89-3.81 (m, 1H), 3.78-3.74 (m, 1H), 3.60-3.51 (m, 2H), 3.41 (s, 3H), 2.99 (s, 3H); LCMS: 247.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.88 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 70% EtOAc:hexane (Rf: 0.3).
Synthesis of (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (650 mg, 2.63 mmol) in THF (15 mL) under an argon atmosphere were added triphenylphosphine (1 g, 3.95 mmol) and DIAD (800 mg, 3.95 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (450 mg, 75%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.64 (s, 1H), 4.38-4.34 (m, 1H), 3.91-3.89 (m, 1H), 3.60-3.55 (m, 1H), 3.54-3.51 (m, 1H), 3.50-3.42 (m, 1H), 3.39 (s, 3H), 3.20 (s, 3H); LCMS: 229.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.56 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.6).
Synthesis of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a stirred solution of (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (450 mg, 1.96 mmol) in CH2Cl2 (20 mL) was added boron tribromide (1.47 g, 5.89 mmol) under an argon atmosphere at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction was cooled to 0° C., basified with a 2N sodium hydroxide solution, warmed to room temperature and stirred for 30 min. Then the reaction was acidified with acetic acid (pH 3-4) and the aqueous layer extracted with CH2Cl2 (3×40 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (300 mg, 71%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.63 (s, 1H), 4.45-4.40 (m, 1H), 3.94-3.90 (m, 1H), 3.89-3.83 (m, 1H), 3.80-3.73 (m, 1H), 3.57-3.51 (m, 1H), 3.23 (s, 3H); LCMS: 215.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.45 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Example 84
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (35 mg, 0.04 mmol) and Xantphos (66 mg, 0.11 mmol) in 1, 4-dioxane (2.5 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.75 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (290 mg, 1.51 mmol) and cesium carbonte (346 mg, 1.06 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting materials (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 32%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 8.02 (d, 1H), 7.82 (d, 1H), 7.78 (s, 1H), 7.68 (s, 1H), 7.67-7.64 (m, 1H), 7.56 (t, 1H), 7.46-7.43 (m, 1H), 7.36 (t, 2H), 7.10 (s, 1H), 5.13-5.10 (m, 1H), 4.30 (d, 1H), 4.15 (d, 1H), 3.10 (s, 3H), 2.38 (s, 3H); LCMS: 485.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.05 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse-XDB-C18 150×4.6 mm, 5 μm); RT 11.79 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 84 was separated using a Chiralpak IA (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as mobile phase) to provide the compound of Example 84A (Fraction I (+)) and the compound of Example 84B (Fraction II (−)).
Example 84A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 84A was produced as described in Example 84. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01 (d, 1H), 7.81 (d, 1H), 7.77 (s, 1H), 7.67 (s, 1H), 7.68-7.61 (m, 1H), 7.56 (t, 1H), 7.46-7.43 (m, 1H), 7.39-7.31 (m, 2H), 7.08 (s, 1H), 5.00-4.98 (m, 1H), 4.30 (d, 1H), 4.12 (d, 1H), 3.05 (s, 3H), 2.21 (s, 3H); Mass (ESI): 485.5 [M+1]; LCMS: 485.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.08 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse-XDB-C18 150×4.6 mm, 5 μm); RT 11.81 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 100% RT=18.37 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D22.99: +89.68 (c=0.25, DCM).
Example 84B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 84B was produced as described in Example 84. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01 (d, 1H), 7.81 (d, 1H), 7.77 (s, 1H), 7.67 (s, 1H), 7.68-7.61 (m, 1H), 7.56 (t, 1H), 7.46-7.43 (m, 1H), 7.39-7.31 (m, 2H), 7.08 (s, 1H), 5.00-4.98 (m, 1H), 4.30 (d, 1H), 4.12 (d, 1H), 3.05 (s, 3H), 2.21 (s, 3H); Mass (ESI): 485.4 [M+1]; LCMS: 485.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.05 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse-XDB-C18 150×4.6 mm, 5 μm); RT 11.80 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.38% RT=26.04 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D23.01: −82.32 (c=0.25, DCM).
Example 85
Synthesis of 2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




Synthesis of 2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine
A dry vial charged with Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (69 mg, 0.12 mmol) in 1, 4-dioxane (0.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2-chlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.80 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (189 mg, 0.88 mmol) and cesium carbonte (364 mg, 1.12 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 48 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was filtered through celite and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine (150 mg, 39%) as an off-white solid. LCMS: 474.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 85 was separated using a Chiralpak IA (250×20 mm, 5 μm (20 mg loading; 0.1% DEA in n-hexane: DCM:MeOH (50:50); (85:15) as mobile phase) to provide the compound of Example 85A (Fraction I (−)) and the compound of Example 85B (Fraction II (+)).
Example 85A
Synthesis of (−)-2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




The compound of Example 85A was produced as described in Example 85. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.70 (s, 1H), 7.59 (s, 1H), 7.50-7.45 (m, 2H), 7.40 (d, 1H), 7.35-7.28 (m, 4H), 7.09 (d, 1H), 5.20-5.18 (m, 1H), 4.31-4.23 (m, 2H), 3.89 (s, 3H), 3.19 (s, 3H), 2.51 (s, 3H); Mass (ESI): 474.5 [M+1]; LCMS: 474.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.05 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 1.71 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=11.79 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −201.12 (c=0.25, DCM).
Example 85B
Synthesis of (+)-2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




The compound of Example 85B was produced as described in Example 85. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 1H), 7.70 (s, 1H), 7.59 (s, 1H), 7.50-7.45 (m, 2H), 7.40 (d, 1H), 7.35-7.28 (m, 4H), 7.09 (d, 1H), 5.20-5.18 (m, 1H), 4.31-4.23 (m, 2H), 3.89 (s, 3H), 3.19 (s, 3H), 2.51 (s, 3H); Mass (ESI): 474.4 [M+1]; LCMS: 474.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.08 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 96.7% RT=12.90 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +187.79 (c=0.25, DCM).
Example 86
Synthesis of 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(2-chloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere were added cesium carbonate (200 mg, 0.61 mmol) followed by 2-bromo-1-(2-chloro-4-methoxyphenyl) ethan-1-one (122 mg, 0.33 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (90 mg) as pale brown solid used without further purification. LCMS: 510.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(2-chloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (160 mg, 0.31 mmol) in 1, 2-dichloroethane (1 mL) under an argon atmosphere were added trifluoroacetic acid (35.8 mg, 0.31 mmol) followed by sodium triacetoxyborohydride (140 mg, 0.66 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 13%) as a white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.67 (s, 1H), 7.58 (s, 1H), 7.27-7.23 (m, 1H), 7.20-7.18 (m, 1H), 7.06 (s, 1H), 7.01-6.97 (m, 2H), 6.89-6.86 (m, 1H), 5.00-4.98 (m, 1H), 4.22-4.20 (m, 2H), 3.83 (s, 3H), 3.80 (s, 3H), 3.13 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493.1 [M+1]; LCMS: 493 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.50 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.73 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 87
Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(2-chloro-5-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (50 mg, 0.15 mmol) in CH3CN (0.5 mL) under an argon atmosphere were added cesium carbonate (100 mg, 0.30 mmol) followed by 2-bromo-1-(2-chloro-5-methoxyphenyl) ethan-1-one (61 mg, 0.16 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2-chloro-5-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (60 mg) as a pale brown solid. LCMS: 509 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.42 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(2-chloro-5-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (150 mg, 0.29 mmol) in 1, 2-dichloroethane (1 mL) under an argon atmosphere were added trifluoroacetic acid (0.02 mL, 0.29 mmol) followed by sodium triacetoxyborohydride (131 mg, 0.61 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (25 mg, 16%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.87-7.82 (m, 2H), 7.59 (s, 1H), 7.39 (d, 1H), 7.27-7.21 (m, 1H), 7.19 (d, 1H), 7.00 (s, 1H), 6.90 (d, 1H), 6.58-6.56 (m, 1H), 5.11-5.08 (m, 1H), 4.30-4.20 (m, 2H), 3.83 (s, 3H), 3.67 (s, 3H), 3.14 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493 [M+1]; LCMS: 493 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.71 min. ACN: 0.025% TFA (Aq); 0.50 mL/min. TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Example 88
Synthesis of 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (25 mg, 0.02 mmol) and Xantphos (47 mg, 0.08 mmol) in 1, 4-dioxane (2 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.54 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (223 mg, 1.09 mmol) and cesium carbonate (250 mg, 0.76 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (210 mg, 72%) as a white solid. 1H NMR (CD3OD, 400 MHz) δ 7.78-7.72 (m, 2H), 7.70-7.64 (m, 3H), 7.32-7.25 (m, 2H), 7.20 (d, 1H), 6.98 (s, 1H), 5.29-5.27 (m, 1H), 4.36-4.26 (m, 2H), 3.86 (s, 3H), 3.19 (s, 3H), 2.21 (s, 3H); Mass (ESI): 531.1 [M+1]; LCMS: 530.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.60 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.81 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 88 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 88A (Fraction I (+)) and the compound of Example 88B (Fraction II (−)).
Example 88A
Synthesis of (+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 88A was produced as described in Example 88. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (d, 2H), 7.70-7.63 (m, 3H), 7.30-7.28 (m, 2H), 7.20 (d, 1H), 6.99 (s, 1H), 5.30-5.28 (m, 1H), 4.38-4.29 (m, 2H), 3.88 (s, 3H), 3.10 (s, 3H), 2.22 (s, 3H); Mass (ESI): 531.6 [M+1]; LCMS: 531.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.60 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.82 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.0% RT=6.79 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +151.21 (c=0.25, CH2Cl2).
Example 88B
Synthesis of (−)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 88B was produced as described in Example 88. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (d, 2H), 7.70-7.63 (m, 3H), 7.30-7.28 (m, 2H), 7.20 (d, 1H), 6.99 (s, 1H), 5.30-5.28 (m, 1H), 4.38-4.29 (m, 2H), 3.88 (s, 3H), 3.10 (s, 3H), 2.22 (s, 3H); Mass (ESI): 531.7 [M+1]; LCMS: 531.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.58 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.83 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=7.92 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: 147.52 (c=0.25, CH2Cl2).
Example 89
Synthesis of 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(2, 5-dichloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere was added cesium carbonate (200 mg, 0.61 mmol) followed by 2-bromo-1-(2, 5-dichloro-4-methoxyphenyl) ethan-1-one (100 mg, 0.33 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(2, 5-dichloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (130 mg) as pale brown solid used without further purification. LCMS: 583.9 (M+ACN); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.53 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(2, 5-dichloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (120 mg, 0.22 mmol) in 1, 2-dichloroethane (2 mL) under an argon atmosphere was added trifluoroacetic acid (25 mg, 0.46 mmol) followed by sodium triacetoxyborohydride (98 mg, 0.46 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 17%) as a white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.68 (s, 1H), 7.60 (s, 1H), 7.26-7.20 (m, 2H), 7.19 (d, 1H), 7.01 (s, 1H), 6.97-6.95 (m, 1H), 5.00-4.98 (m, 1H), 4.27-4.19 (m, 2H), 3.90 (s, 3H), 3.85 (s, 3H), 3.15 (s, 3H), 2.21 (s, 3H); Mass (ESI): 527 [M+1]; LCMS: 526.9 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.47 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% TFA (Aq); 0.50 mL/min TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Example 90
Synthesis of 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(5-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere were added cesium carbonate (200 mg, 0.60 mmol) followed by 2-bromo-1-(5-methoxy-2-methylphenyl) ethan-1-one (82 mg, 0.33 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(5-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (130 mg) as a pale brown solid used without further purification. LCMS: 489.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.6).
Synthesis of 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(5-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (140 mg, 0.28 mmol) in 1, 2-dichloroethane (1.5 mL) under an argon atmosphere were added trifluoroacetic acid (0.02 mL, 0.28 mmol) followed by sodium triacetoxyborohydride (127 mg, 0.60 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (18 mg, 13%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.65 (s, 1H), 7.54 (s, 1H), 7.23-7.20 (m, 1H), 7.19-7.12 (m, 2H), 6.93 (s, 1H), 6.79 (d, 1H), 6.51 (s, 1H), 4.93-4.90 (m, 1H), 4.23-4.20 (m, 1H), 4.11-4.09 (m, 1H), 3.83 (s, 3H), 3.65 (s, 3H), 3.10 (s, 3H), 2.31 (s, 3H), 2.20 (s, 3H); Mass (ESI): 473 [M+1]; LCMS: 473.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% TFA (Aq); 0.50 ml/min TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Example 91
Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (23 mg, 0.02 mmol) and Xantphos (44 mg, 0.07 mmol) in 1, 4-dioxane (2 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.50 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (204 mg, 1.00 mmol) and cesium carbonate (229 mg, 0.70 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to afford 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 45%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.07 (s, 1H), 7.99 (d, 1H), 7.72 (s, 1H), 7.68 (s, 2H), 7.55 (d, 1H), 7.25 (d, 1H), 7.18 (d, 1H), 6.96 (s, 1H), 5.20-5.18 (m, 1H), 4.33-4.30 (m, 1H), 4.17-4.15 (m, 1H), 3.84 (s, 3H), 3.11 (s, 3H), 2.21 (s, 3H); Mass (ESI): 565 [M+1]; LCMS: 565 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.65 min. 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.00 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 92
Synthesis of 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(4-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere were added cesium carbonate (200 mg, 0.61 mmol) and 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one (90 mg, 0.33 mmol) at 0° C. The reaction mixture was stirred room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford 1-(4-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (120 mg) as a pale yellow solid used without further purification. LCMS: 489.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.49 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-M-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine
To a stirred solution of 1-(4-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (100 mg, 0.30 mmol) in 1, 2-dichloroethane (1 mL) under an argon atmosphere were added trifluoroacetic acid (30 mg, 0.26 mmol) and sodium triacetoxyborohydride (118 mg, 0.55 mmol) and stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with a 1 N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (13 mg, 10%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.69 (s, 1H), 7.55 (s, 1H), 7.25-7.15 (m, 2H), 6.99 (s, 1H), 6.93 (d, 1H), 6.81 (s, 1H), 6.79-6.75 (m, 1H), 4.93-4.90 (m, 1H), 4.22-4.20 (m, 1H), 4.10-4.08 (m, 1H), 3.85 (s, 3H), 3.79 (s, 3H), 3.09 (s, 3H), 2.40 (s, 3H), 2.22 (s, 3H); Mass (ESI): 473 [M+1]; LCMS: 473 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.34 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 93
Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine




Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (69 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2-chloro-4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (324 mg, 1.59 mmol) and cesium carbonate (363 mg, 1.11 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was filtered, washed with EtOAc (2×20 mL) and the filtrate washed with water (20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 100% EtOAc to afford 7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 31%) as an off-white solid. LCMS: 481.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.03 min. 0.05% Aq TFA: ACN; 0.80 mL/min).
Racemic compound of Example 93 was separated using a Chiralpak ADH (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 93A (Fraction I (−)) and the compound of Example 93B (Fraction II (+)).
Example 93A
Synthesis of (−)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine




The compound of Example 93A was produced as described in Example 93. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.67 (s, 1H), 7.59 (s, 1H), 7.35 (d, 1H), 7.26 (d, 1H), 7.19 (d, 1H), 7.11-7.09 (m, 2H), 6.97 (s, 1H), 5.19-5.16 (m, 1H), 4.29-4.21 (m, 2H), 3.87 (s, 3H), 3.17 (s, 3H), 2.23 (s, 3H); Mass (ESI): 481.4 [M+1]; LCMS: 481.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.06 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: 98.6% RT=18.86 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −148.54 (c=0.25, CH2Cl2).
Example 93B
Synthesis of (+)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine




The compound of Example 93B was produced as described in Example 93. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.67 (s, 1H), 7.59 (s, 1H), 7.35 (d, 1H), 7.26 (d, 1H), 7.19 (d, 1H), 7.11-7.09 (m, 2H), 6.97 (s, 1H), 5.19-5.16 (m, 1H), 4.29-4.21 (m, 2H), 3.87 (s, 3H), 3.17 (s, 3H), 2.23 (s, 3H); Mass (ESI): 481.4 [M+1]; LCMS: 481.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.05 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: 98.4% RT=23.20 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +155.15 (c=0.25, CH2Cl2).
Example 94
Synthesis of 7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (50 mg, 0.08 mmol) in 1, 4-dioxane (2 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(4-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.57 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (234 mg, 1.15 mmol) and cesium carbonate (262 mg, 0.80 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford 7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 67%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 7.77 (s, 1H), 7.68 (d, 2H), 7.60 (dd, 1H), 7.46-7.38 (m, 2H), 7.27 (dd, 1H), 7.20 (d, 1H), 6.90 (s, 1H), 5.19-5.17 (m, 1H), 4.30-4.28 (m, 1H), 4.18-4.10 (m, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.25 (s, 3H); (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.82 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 94 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 94A (Fraction I (−)) and the compound of Example 94B (Fraction II (+)).
Example 94A
Synthesis of (−)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 94A was produced as described in Example 94. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.73 (s, 1H), 7.64 (s, 2H), 7.59 (d, 1H), 7.40-7.35 (m, 2H), 7.22 (d, 1H), 7.17 (d, 1H), 6.95 (s, 1H), 5.00-4.09 (m, 1H), 4.30-4.28 (m, 1H), 4.11-4.09 (m, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 515.5 [M+1]; LCMS: 515.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.12 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.84 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.2% RT=10.91 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −107.92 (c=0.25, CH2Cl2).
Example 94B
Synthesis of (+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 94B was produced as described in Example 94. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.73 (s, 1H), 7.64 (s, 2H), 7.59 (d, 1H), 7.40-7.35 (m, 2H), 7.22 (d, 1H), 7.17 (d, 1H), 6.95 (s, 1H), 5.00-4.09 (m, 1H), 4.30-4.28 (m, 1H), 4.11-4.09 (m, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 515.5 [M+1]; LCMS: 515.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.11 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.84 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.2% RT=12.53 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +104.76 (c=0.25, CH2Cl2).
Example 95
Synthesis of 7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (28 mg, 0.03 mmol) and Xantphos (53 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2, 4-dichlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (246 mg, 1.21 mmol) and cesium carbonate (276 mg, 0.85 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 0-5% MeOH/CH2Cl2 to afford 7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (140 mg, 35%) as a colorless liquid. LCMS: 497.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.11 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.84 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 95 was separated using a Chiralpak ADH (250×20 mm: 5 μm; (50 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 95A (Fraction I (−)) and the compound of Example 95B (Fraction II (+)).
Example 95A
Synthesis of (−)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 95A was produced as described in Example 95. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.67 (s, 1H), 7.59 (d, 2H), 7.33 (d, 1H), 7.26-7.23 (m, 1H), 7.20-7.18 (m, 1H), 7.09-7.06 (m, 1H), 6.98 (s, 1H), 5.19-5.17 (m, 1H), 4.30-4.20 (m, 2H), 3.84 (s, 3H), 3.16 (s, 3H), 2.21 (s, 3H); Mass (ESI): 497 [M+]; LCMS: 497 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.65 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.85 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=16.48 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −224.08 (c=0.25, CH2Cl2).
Example 95B
Synthesis of (+)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 95B was produced as described in Example 95. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.67 (s, 1H), 7.59 (d, 2H), 7.33 (d, 1H), 7.26-7.23 (m, 1H), 7.20-7.18 (m, 1H), 7.09-7.06 (m, 1H), 6.98 (s, 1H), 5.19-5.17 (m, 1H), 4.30-4.20 (m, 2H), 3.84 (s, 3H), 3.16 (s, 3H), 2.21 (s, 3H); Mass (ESI): 497.1 [M+]; LCMS: 497 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.65 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.85 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.0% RT=25.87 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +231.32 (c=0.25, CH2Cl2).
Example 96
Synthesis of 7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (27 mg, 0.03 mmol) and Xantphos (52 mg, 0.09 mmol) in 1, 4-dioxane (2 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2, 4-dichlorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.60 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (231 mg, 0.12 mmol) and cesium carbonate (275 mg, 0.84 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with 20% MeOH/CH2Cl2 (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH/CH2Cl2 to afford 7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 34%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.95-7.90 (m, 1H), 7.69-7.63 (m, 1H), 7.47 (s, 1H), 7.27-7.20 (m, 3H), 7.12 (s, 1H), 7.00-6.98 (m, 1H), 6.90 (s, 1H), 5.02-5.00 (m, 1H), 4.70 (s, 1H), 4.30-4.20 (m, 2H), 3.14 (s, 3H), 2.30 (s, 3H); LCMS: 485.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.17 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 96 was separated using a Chiralpak IA (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B; 75:25) as mobile phase) to provide the compound of Example 96A (Fraction I (+)) and the compound of Example 96B (Fraction II (−)).
Example 96A
Synthesis of (+)-7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 96A was produced as described in Example 96. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.74 (s, 1H), 7.60 (s, 1H), 7.57 (s, 1H), 7.42-7.40 (m, 1H), 7.32 (t, 2H), 7.09 (s, 1H), 7.08 (s, 1H), 5.19-5.17 (m, 1H), 4.30-4.20 (m, 2H), 3.14 (s, 3H), 2.22 (s, 3H); Mass (ESI): 485.7 [M+1]; LCMS: 485.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.17 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=14.73 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +164.62 (c=0.25, DCM).
Example 96B
Synthesis of (−)-7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 96B was produced as described in Example 96. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.74 (s, 1H), 7.60 (s, 1H), 7.57 (s, 1H), 7.42-7.40 (m, 1H), 7.32 (t, 2H), 7.09 (s, 1H), 7.08 (s, 1H), 5.19-5.17 (m, 1H), 4.30-4.20 (m, 2H), 3.14 (s, 3H), 2.22 (s, 3H); Mass (ESI): 485.6 [M+1]; LCMS: 485.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.18 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.1% RT=16.38 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −180.25 (c=0.25, DCM).
Example 97
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (74 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (321 mg, 1.58 mmol) and cesium carbonate (361 mg, 1.10 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 38%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.20 (s, 1H), 7.88 (s, 1H), 7.70-7.63 (m, 2H), 7.60 (s, 1H), 7.32-7.30 (m, 1H), 7.20-7.10 (m, 2H), 6.98 (s, 1H), 5.10-5.09 (m, 1H), 4.22-4.19 (m, 2H), 3.78 (s, 3H), 3.10 (s, 3H), 2.11 (s, 3H); LCMS: 483.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.87 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 97 was separated using a (Chiral pack-AD-H (250×4.6 mm, 5 μm (30 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 75:25) as mobile phase) to provide the compound of Example 97A (Fraction I (−)) and the compound of Example 97B (Fraction II (+)).
Example 97A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 97A was produced as described in Example 97. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.20 (s, 1H), 7.88 (s, 1H), 7.70-7.63 (m, 2H), 7.60 (s, 1H), 7.32-7.30 (m, 1H), 7.20-7.10 (m, 2H), 6.98 (s, 1H), 5.10-5.09 (m, 1H), 4.22-4.19 (m, 2H), 3.78 (s, 3H), 3.10 (s, 3H), 2.11 (s, 3H); Mass (ESI): 483.5 [M+1]; LCMS: 483.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.05 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100.0% RT=17.49 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −149.29 (c=0.25, CH2Cl2).
Example 97B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 97B was produced as described in Example 97. Analytical data for product Fraction II (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.20 (s, 1H), 7.85 (s, 1H), 7.70-7.64 (m, 2H), 7.61 (s, 1H), 7.32-7.30 (m, 1H), 7.19-7.10 (m, 2H), 7.00 (s, 1H), 5.00-5.07 (m, 1H), 4.22-4.20 (m, 2H), 3.78 (s, 3H), 3.10 (s, 3H), 2.11 (s, 3H); Mass (ESI): 483.5 [M+1]; LCMS: 483.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.05 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=27.82 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +152.65 (c=0.25, CH2Cl2).
Example 98
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (74 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (302 mg, 1.58 mmol) and cesium carbonate (361 mg, 1.10 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (135 mg, 38%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.44 (s, 1H), 8.09-8.00 (m, 1H), 7.77 (s, 1H), 7.70-7.60 (m, 2H), 7.52 (d, 1H), 7.39 (t, 1H), 7.17-7.08 (m, 2H), 5.10-5.08 (m, 1H), 4.21 (s, 2H), 3.10 (s, 3H), 2.13 (s, 3H); LCMS: 471.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 98 was separated using a Chiralcel ADH (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 65:35) as mobile phase) to provide the compound of Example 98A (Fraction I (+)) and the compound of Example 98B (Fraction II (−)).
Example 98A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 98A was produced as described in Example 98. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.44 (s, 1H), 8.06-8.00 (m, 1H), 7.78 (s, 1H), 7.70-7.63 (m, 2H), 7.53 (d, 1H), 7.40 (t, 1H), 7.13-7.09 (m, 2H), 5.10-5.08 (m, 1H), 4.20 (s, 2H), 3.09 (s, 3H), 2.12 (s, 3H); Mass (ESI): 471.5 [M+1]; LCMS: 470.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.05 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.8% RT=19.36 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +150.56 (c=0.25, CH2Cl2).
Example 98B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 98B was produced as described in Example 98. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.44 (s, 1H), 8.06-8.00 (m, 1H), 7.78 (s, 1H), 7.70-7.63 (m, 2H), 7.53 (d, 1H), 7.40 (t, 1H), 7.13-7.09 (m, 2H), 5.10-5.08 (m, 1H), 4.20 (s, 2H), 3.09 (s, 3H), 2.12 (s, 3H); Mass (ESI): 471.5 [M+1]; LCMS: 470.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.04 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.8% RT=31.07 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −113.98 (c=0.25, CH2Cl2).
Example 99
Synthesis of 7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (62 mg, 0.10 mmol) in 1, 4-dioxane (1 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(4-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.72 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (275 mg, 1.44 mmol) and cesium carbonate (328 mg, 1.00 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford 7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 55%) as an off-white solid. LCMS: 503 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.64 min 0.05% Aq TFA: ACN; 0.80 ml/min); HPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 11.82 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 99 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 99A (Fraction I (+)) and the compound of Example 99B (Fraction II (−)).
Example 99A
Synthesis of (+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 99A was produced as described in Example 99. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.99 (m, 1H), 7.75 (s, 1H), 7.67 (s, 1H), 7.60-7.57 (m, 1H), 7.40-7.30 (m, 4H), 7.07-7.05 (m, 1H), 5.10-5.08 (m, 1H), 4.30-4.25 (m, 1H), 4.11-4.09 (m, 1H), 3.08 (s, 3H), 2.23 (s, 3H); Mass (ESI): 503.5 [M+1]; LCMS: 503.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.87 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0μ); RT 11.78 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.2% RT=9.99 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +91.82 (c=0.25, CH2Cl2).
Example 99B
Synthesis of (−)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 99B was produced as described in Example 99. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.99 (m, 1H), 7.75 (s, 1H), 7.67 (s, 1H), 7.60-7.57 (m, 1H), 7.40-7.30 (m, 4H), 7.07-7.05 (m, 1H), 5.10-5.08 (m, 1H), 4.30-4.25 (m, 1H), 4.11-4.09 (m, 1H), 3.08 (s, 3H), 2.23 (s, 3H); Mass (ESI): 503.5 [M+1]; LCMS: 503.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.87 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0μ); RT 11.79 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.0% RT=13.41 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −85.58 (c=0.25, CH2Cl2).
Example 100
Synthesis of 7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (25 mg, 0.02 mmol) and Xantphos (47 mg, 0.08 mmol) in 1, 4-dioxane (1 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.55 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (114 mg, 0.60 mmol) and cesium carbonate (250 mg, 0.77 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3-5% MeOH: CH2Cl2 to afford 7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 64%) as an off-white solid. LCMS: 518.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.66 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 100 was separated using a Chiralpak IC (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 100A (Fraction I (+)) and the compound of Example 100B (Fraction II (−)).
Example 100A
Synthesis of (+)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 100A was produced as described in Example 100. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00 (d, 1H), 7.80 (d, 1H), 7.78 (s, 1H), 7.70 (s, 1H), 7.60 (d, 1H), 7.41 (d, 1H), 7.37-7.31 (m, 1H), 7.28 (s, 1H), 7.08 (s, 1H), 5.10-5.08 (m, 1H), 4.30 (d, 1H), 4.11 (d, 1H), 3.11 (s, 3H), 2.23 (s, 3H); Mass (ESI): 519.1 [M+1]; LCMS: 519.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.84 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.88 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.61% RT=20.65 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +129.20 (c=0.25, CH2Cl2).
Example 100B
Synthesis of (−)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 100B was produced as described in Example 100. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00 (d, 1H), 7.80 (d, 1H), 7.78 (s, 1H), 7.70 (s, 1H), 7.60 (d, 1H), 7.41 (d, 1H), 7.37-7.31 (m, 1H), 7.28 (s, 1H), 7.08 (s, 1H), 5.10-5.08 (m, 1H), 4.30 (d, 1H), 4.11 (d, 1H), 3.11 (s, 3H), 2.23 (s, 3H); Mass (ESI): 519 [M+1]; LCMS: 519 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.88 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 95.4% RT=22.68 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −122.57 (c=0.25, CH2Cl2).
Example 101
Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (70 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2-chloro-4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.80 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (306 mg, 1.60 mmol) and cesium carbonate (366 mg, 1.12 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford 7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 26%) as an off-white solid. LCMS: 469.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 101 was separated using a Chiralpak IA (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B; 70:30) as mobile phase) to provide the compound of Example 101A (Fraction I (+)) and the compound of Example 101B (Fraction II (−)).
Example 101A
Synthesis of (+)-7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 101A was produced as described in Example 101. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.02-8.00 (m, 1H), 7.78 (s, 1H), 7.60 (s, 1H), 7.41-7.30 (m, 3H), 7.10-7.03 (m, 3H), 5.15-5.11 (m, 1H), 4.31-4.21 (m, 2H), 3.17 (s, 3H), 2.28 (s, 3H); Mass (ESI): 469 [M+1]; LCMS: 469 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.70 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=11.8 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +162.20 (c=0.25, CH2Cl2).
Example 101B
Synthesis of (−)-7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 101B was produced as described in Example 101. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.02-8.00 (m, 1H), 7.78 (s, 1H), 7.60 (s, 1H), 7.41-7.30 (m, 3H), 7.10-7.03 (m, 3H), 5.15-5.11 (m, 1H), 4.31-4.21 (m, 2H), 3.17 (s, 3H), 2.28 (s, 3H); Mass (ESI): 469.1 [M+1]; LCMS: 469 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.70 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=14.49 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −160.57 (c=0.25, CH2Cl2).
Example 102
Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (55 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2-chloro-4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.63 mmol), 3-fluoro-4-(2-methylpyridin-4-yl) aniline (260 mg, 0.12 mmol) and cesium carbonate (290 mg, 0.89 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH/CH2Cl2 to afford 7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 42%) as an off-white solid. HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.82 min. ACN: 0.025% Aq TFA; 0.5 ml/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 102 was separated using a Chiralpak IA (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as mobile phase) to provide the compound of Example 102A (Fraction I (+)) and the compound of Example 102B (Fraction II (−)).
Example 102A
Synthesis of (+)-7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 102A was produced as described in Example 102. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.92-7.88 (m, 1H), 7.60 (s, 1H), 7.50-7.40 (m, 4H), 7.31 (d, 1H), 7.09 (d, 2H), 5.18 (s, 1H), 4.30-4.21 (m, 2H), 3.15 (s, 3H), 2.59 (s, 3H); Mass (ESI): 480 [M+1]; LCMS: 479.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.81 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100.0% RT=18.06 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +139.93 (c=0.25, DCM).
Example 102B
Synthesis of (−)-7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 102B was produced as described in Example 102. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.40 (d, 1H), 7.92-7.88 (m, 1H), 7.60 (s, 1H), 7.50-7.40 (m, 4H), 7.31 (d, 1H), 7.09 (d, 2H), 5.18 (s, 1H), 4.30-4.21 (m, 2H), 3.15 (s, 3H), 2.59 (s, 3H); Mass (ESI): 480.1 [M+1]; LCMS: 479.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.82 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.7% RT=20.83 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −139.37 (c=0.25, DCM).
Example 103
Synthesis of 7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-4, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (27 mg, 0.03 mmol) and Xantphos (52 mg, 0.90 mmol) in 1, 4-dioxane (1 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.60 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (245 mg, 0.12 mmol) and cesium carbonate (274 mg, 0.84 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with ether (2×20 mL) to afford 7-(2-chloro-4, 5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 60%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 9.03 (s, 1H), 7.80 (s, 1H), 7.68 (s, 1H), 7.60-7.58 (m, 1H), 7.50 (s, 1H), 7.47 (d, 1H), 7.37 (d, 1H), 7.11-7.09 (m, 1H), 5.30-5.27 (m, 1H), 4.40-4.29 (m, 2H), 3.91 (s, 3H), 3.21 (s, 3H), 2.41 (s, 3H); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 103 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (20 mg loading; 0.1% TFA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 103A (Fraction I (+)) and the compound of Example 103B (Fraction II (−)).
Example 103A
Synthesis of (+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 103A was produced as described in Example 103. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 9.05 (s, 1H), 7.80 (s, 1H), 7.65 (s, 1H), 7.61-7.59 (m, 1H), 7.51 (s, 1H), 7.48 (d, 1H), 7.37 (d, 1H), 7.11-7.09 (m, 1H), 5.30-5.27 (m, 1H), 4.40-4.30 (m, 2H), 3.92 (s, 3H), 3.21 (s, 3H), 2.40 (s, 3H); Mass (ESI): 499 [M+1]; LCMS: 499 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.9% RT=17.89 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% TFA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +128.46 (c=0.25, CH2Cl2).
Example 103B
Synthesis of (−)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 103B was produced as described in Example 103. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 9.05 (s, 1H), 7.80 (s, 1H), 7.65 (s, 1H), 7.61-7.59 (m, 1H), 7.51 (s, 1H), 7.48 (d, 1H), 7.37 (d, 1H), 7.11-7.09 (m, 1H), 5.30-5.27 (m, 1H), 4.40-4.30 (m, 2H), 3.92 (s, 3H), 3.21 (s, 3H), 2.40 (s, 3H); Mass (ESI): 499 [M+1]; LCMS: 499 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=21.00 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% TFA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −121.56 (c=0.25, CH2Cl2).
Example 104
Synthesis of 7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (62 mg, 0.10 mmol) in 1, 4-dioxane (1.5 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(5-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.72 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (275 mg, 1.44 mmol) and cesium carbonate (327 mg, 1.00 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH/CH2Cl2 to afford 7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 50%) as an off-white solid. UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.82 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 104 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: THF:MeOH (85:15); (A:B: 80:20) as mobile phase) to provide the compound of Example 104A (Fraction I (−)) and the compound of Example 104B (Fraction II (+)).
Example 104A
Synthesis of (−)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 104A was produced as described in Example 104. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 500 MHz): δ 8.02 (dd, 1H), 7.90-7.86 (m, 1H), 7.80-7.78 (m, 1H), 7.71 (s, 1H), 7.46-7.43 (m, 1H), 7.38-7.28 (m, 2H), 7.08 (s, 1H), 7.04 (d, 1H), 5.12-5.10 (m, 1H), 4.31 (d, 1H), 4.15 (d, 1H), 3.11 (s, 3H), 2.23 (s, 3H); Mass (ESI): 503 [M+1]; LCMS: 503 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.55 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclpise XDB C-18, 150×4.6 mm, 5.0μ); RT 11.65 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 94.1% RT=14.34 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (85:15) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: −64.56 (c=0.25, CH2Cl2).
Example 104B
Synthesis of (+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 104B was produced as described in Example 104. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 500 MHz): δ 8.02 (dd, 1H), 7.90-7.86 (m, 1H), 7.80-7.78 (m, 1H), 7.71 (s, 1H), 7.46-7.43 (m, 1H), 7.38-7.28 (m, 2H), 7.08 (s, 1H), 7.04 (d, 1H), 5.12-5.10 (m, 1H), 4.31 (d, 1H), 4.15 (d, 1H), 3.11 (s, 3H), 2.23 (s, 3H); Mass (ESI): 503 [M+1]; LCMS: 503 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.55 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclpise XDB C-18, 150×4.6 mm, 5.0μ); RT 11.66 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.5% RT=18.84 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (85:15) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +67.23 (c=0.25, CH2Cl2).
Example 105
Synthesis of 7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (62 mg, 0.10 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(5-fluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.72 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (292 mg, 1.44 mmol) and cesium carbonate (327 mg, 1.00 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 8% MeOH/CH2Cl2 to afford 7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (80 mg, 21%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 7.91-7.85 (m, 1H), 7.79-7.77 (m, 1H), 7.70-7.68 (m, 2H), 7.34-7.26 (m, 2H), 7.21-7.19 (m, 1H), 7.06-7.02 (m, 1H), 6.99 (s, 1H), 5.14-5.12 (m, 1H), 4.32-4.28 (m, 1H), 4.19-4.12 (m, 1H), 3.87 (s, 3H), 3.15 (s, 3H), 2.23 (s, 3H); LCMS: 514.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.54 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Eclipse XDB-C-18 150×4.6 mm, 5.0 μm); RT 11.60 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 105 was separated using a Chiralpak IA (250×20 mm: 5 μm; (150 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 85:15) as mobile phase) to provide the compound of Example 105A (Fraction I (−)) and the compound of Example 105B (Fraction II (+)).
Example 105A
Synthesis of (−)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 105A was produced as described in Example 105. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.90-7.86 (m, 1H), 7.79-7.77 (m, 1H), 7.70-7.68 (m, 2H), 7.34-7.26 (m, 2H), 7.21-7.19 (m, 1H), 7.06-7.02 (m, 1H), 6.99 (s, 1H), 5.14-5.12 (m, 1H), 4.32-4.28 (m, 1H), 4.19-4.12 (m, 1H), 3.87 (s, 3H), 3.15 (s, 3H), 2.23 (s, 3H); Mass (ESI): 515.1 [M+1]; LCMS: 515 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.50 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.80 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=13.66 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −114.72 (c=0.25, CH2Cl2).
Example 105B
Synthesis of (+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 105B was produced as described in Example 105. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.90-7.86 (m, 1H), 7.79-7.77 (m, 1H), 7.70-7.68 (m, 2H), 7.34-7.26 (m, 2H), 7.21-7.19 (m, 1H), 7.06-7.02 (m, 1H), 6.99 (s, 1H), 5.14-5.12 (m, 1H), 4.32-4.28 (m, 1H), 4.19-4.12 (m, 1H), 3.87 (s, 3H), 3.15 (s, 3H), 2.23 (s, 3H); Mass (ESI): 515 [M+1]; LCMS: 515 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.49 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.79 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.3% RT=15.69 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +102.62 (c=0.25, CH2Cl2).
Example 106
Synthesis of 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (31 mg, 0.03 mmol) and Xantphos (59 mg, 0.10 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(4-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.68 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (157 mg, 0.82 mmol) and cesium carbonate (313 mg, 0.96 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% MeOH/CH2Cl2 to afford 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (80 mg, 22%) as an off-white solid. UPLC (column; Acquity UPLC BEH-C18 2.1×50 mm, 1.7 μm); RT 1.97 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 106 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 106A (Fraction I (+)) and the compound of Example 106B (Fraction II (−)).
Example 106A
Synthesis of (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 106A was produced as described in Example 106. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 500 MHz): δ 8.04-8.01 (m, 1H), 7.85-7.83 (m, 1H), 7.78 (s, 1H), 7.71-7.66 (m, 2H), 7.46-7.42 (m, 1H), 7.38-7.32 (m, 2H), 7.10 (s, 1H), 5.13-5.10 (m, 1H), 4.20 (d, 1H), 4.14 d, 1H), 3.09 (s, 3H), 2.25 (s, 3H); Mass (ESI): 519 [M+1]; LCMS: 519 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.74 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.97 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100.0% RT=15.68 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +140.00 (c=0.25, MeOH).
Example 106B
Synthesis of (−)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 106B was produced as described in Example 106. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 500 MHz): δ 8.04-8.01 (m, 1H), 7.85-7.83 (m, 1H), 7.78 (s, 1H), 7.71-7.66 (m, 2H), 7.46-7.42 (m, 1H), 7.38-7.32 (m, 2H), 7.10 (s, 1H), 5.13-5.10 (m, 1H), 4.20 (d, 1H), 4.14 d, 1H), 3.09 (s, 3H), 2.25 (s, 3H); Mass (ESI): 519 [M+1]; LCMS: 519 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.74 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.97 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=21.36 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −126.81 (c=0.25, MeOH).
Example 107
Synthesis of 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (31 mg, 0.03 mmol) and Xantphos (59 mg, 0.10 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(4-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.68 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (293 mg, 1.37 mmol) and cesium carbonate (312 mg, 0.96 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (90 mg, 24%) as an off-white solid. LCMS: 542.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.74 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH-C18 2.1×50 mm, 1.7 μm); RT 1.99 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 107 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as mobile phase) to provide the compound of Example 107A (Fraction I (−)) and the compound of Example 107B (Fraction II (+)).
Example 107A
Synthesis of (−)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 107A was produced as described in Example 107. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30 (d, 1H), 7.80 (s, 1H), 7.67 (d, 3H), 7.43 (s, 1H), 7.40 (d, 1H), 7.37-7.27 (m, 3H), 5.00-4.97 (m, 1H), 4.31-4.29 (m, 1H), 4.12-4.10 (m, 1H), 3.81 (s, 3H), 3.10 (s, 3H), 2.51 (s, 3H); Mass (ESI): 542 [M+1]; LCMS: 541.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.71 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.98 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=11.14 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −139.98 (c=0.25, MeOH).
Example 107B
Synthesis of (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 107B was produced as described in Example 107. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30 (d, 1H), 7.80 (s, 1H), 7.67 (d, 3H), 7.43 (s, 1H), 7.40 (d, 1H), 7.37-7.27 (m, 3H), 5.00-4.97 (m, 1H), 4.31-4.29 (m, 1H), 4.12-4.10 (m, 1H), 3.81 (s, 3H), 3.10 (s, 3H), 2.51 (s, 3H); Mass (ESI): 542 [M+1]; LCMS: 542 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.70 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.99 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.9% RT=12.64 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +148.44 (c=0.25, MeOH).
Example 108
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (53 mg, 0.05 mmol) and Xantphos (100 mg, 0.17 mmol) in 1, 4-dioxane (1.15 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 1.15 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (441 mg, 2.31 mmol) and cesium carbonate (525 mg, 1.61 mmol) in 1, 4-dioxane (1.15 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with acetonitrile (2×20 mL) to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 29%) as an off-white solid. LCMS: 354.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.86 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB-C18 150×4.6 mm, 5.0 μm); RT 9.72 min. 5 mM Aq NH4OAc: ACN; 1.0 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 108 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 65:35) as mobile phase) to provide the compound of Example 108A (Fraction I (−)) and the compound of Example 108B (Fraction II (+)).
Example 108A
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 108A was produced as described in Example 108. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.96 (m, 1H), 7.77 (s, 1H), 7.51 (s, 1H), 7.40-7.30 (m, 2H), 7.06-7.05 (m, 1H), 4.01-4.00 (m, 2H), 3.69-3.63 (m, 1H), 3.19 (s, 3H), 2.23 (s, 3H), 1.30 (d, 3H); Mass (ESI): 355.2 [M+1]; LCMS: 354.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.94 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=11.18 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: 19.08 (c=0.25, MeOH).
Example 108B
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 108B was produced as described in Example 108. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.96 (m, 1H), 7.76 (s, 1H), 7.51 (s, 1H), 7.40-7.30 (m, 2H), 7.08-7.06 (m, 1H), 4.01-4.00 (m, 2H), 3.69-3.63 (m, 1H), 3.19 (s, 3H), 2.23 (s, 3H), 1.30 (d, 3H); Mass (ESI): 355 [M+1]; LCMS: 354.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.97 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.53% RT=16.23 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +26.72 (c=0.25, MeOH).
Example 109
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (50 mg, 0.05 mmol) and Xantphos (96 mg, 0.16 mmol) in 1, 4-dioxane (1.5 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 1.11 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (424 mg, 2.22 mmol) and cesium carbonate (506 mg, 1.55 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH/CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (250 mg, 53%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.00 (d, 1H), 7.80 (s, 1H), 7.51 (s, 1H), 7.40-7.30 (m, 2H), 7.08 (s, 1H), 4.42 (d, 1H), 3.99 (t, 2H), 3.82 (d, 1H), 3.40-3.30 (m, 3H), 3.28 (s, 3H), 2.25 (s, 3H), 2.10-2.02 (m, 1H), 1.68-1.50 (m, 5H); LCMS: 425 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.98 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.26 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 109 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: THF:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 109A (Fraction I (+)) and the compound of Example 109B (Fraction II (−)).
Example 109A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 109A was produced as described in Example 109. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 500 MHz): δ 8.00 (d, 1H), 7.80 (s, 1H), 7.51 (s, 1H), 7.40-7.32 (m, 2H), 7.09 (s, 1H), 4.41 (d, 1H), 3.99 (t, 2H), 3.82 (d, 1H), 3.40-3.32 (m, 3H), 3.30 (s, 3H), 2.23 (s, 3H), 2.10-2.02 (m, 1H), 1.68-1.50 (m, 5H); Mass (ESI): 425 [M+1]; LCMS: 425 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.98 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.5% RT=9.20 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +64.08 (c=0.25, CH2Cl2).
Example 109B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 109B was produced as described in Example 109. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 500 MHz): δ 8.00 (d, 1H), 7.80 (s, 1H), 7.51 (s, 1H), 7.40-7.32 (m, 2H), 7.09 (s, 1H), 4.41 (d, 1H), 3.99 (t, 2H), 3.82 (d, 1H), 3.40-3.32 (m, 3H), 3.30 (s, 3H), 2.23 (s, 3H), 2.10-2.02 (m, 1H), 1.68-1.50 (m, 5H); Mass (ESI): 425 [M+1]; LCMS: 425 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.99 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=9.77 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −39 (c=0.25, CH2Cl2).
Example 110
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (57 mg, 0.06 mmol) and Xantphos (109 mg, 0.18 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.25 mmol), 3-methoxy-4-(2-methylpyridin-4-yl) aniline (537 mg, 2.50 mmol) and cesium carbonate (573 mg, 1.75 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 2% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 42%) as a pale yellow solid. LCMS: 378.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.02 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.32 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 110 was separated using a Chiralpak ADH (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 110A (Fraction I (−)) and the compound of Example 110B (Fraction II (+)).
Example 110A
Synthesis of (−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 110A was produced as described in Example 110. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.30 (m, 1H), 7.66 (s, 1H), 7.47 (s, 1H), 7.45 (s, 1H), 7.40 (d, 1H), 7.29-7.25 (m, 1H), 7.21 (d, 1H), 4.02-4.00 (m, 2H), 3.86 (s, 3H), 3.70-3.61 (m, 1H), 3.20 (s, 3H), 2.52 (s, 3H), 1.30 (d, 3H); Mass (ESI): 378.5 [M+1]; LCMS: 378.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.15 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.34 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=19.10 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: −6.89 (c=0.25, CH2Cl2).
Example 110B
Synthesis of (+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 110B was produced as described in Example 110. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.30 (m, 1H), 7.66 (s, 1H), 7.47 (s, 1H), 7.45 (s, 1H), 7.40 (d, 1H), 7.29-7.25 (m, 1H), 7.21 (d, 1H), 4.02-4.00 (m, 2H), 3.86 (s, 3H), 3.70-3.61 (m, 1H), 3.20 (s, 3H), 2.52 (s, 3H), 1.30 (d, 3H); Mass (ESI): 378.5 [M+1]; LCMS: 378.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.16 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.34 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=22.07 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +7.63 (c=0.25, CH2Cl2).
Example 111
Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (56 mg, 0.98 mmol) in 1, 4-dioxane (0.75 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.65 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (265 mg, 1.31 mmol) and cesium carbonate (298 mg, 0.91 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 4% MeOH: CH2Cl2 to afford (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (55 mg, 21%) as an off-white solid. The product was further purified by Ascentic C-18 (250×4.6 mm: 5 μm; (50 mg loading; CH3CN: 0.05% Aq TFA (0.01/95, 15/70, 25/10, 35/10) as mobile phase). 1H-NMR (DMSO-d6, 500 MHz): δ 9.07 (s, 1H), 7.81 (s, 1H), 7.61 (s, 1H), 7.59 (s, 1H), 7.28 (d, 1H), 7.13 (d, 1H), 7.00 (s, 1H), 4.23 (d, 1H), 3.90-3.87 (m, 1H), 3.79 (s, 3H), 3.78-3.73 (m, 1H), 3.52-3.49 (m, 2H), 3.31 (s, 3H), 3.20 (s, 3H), 2.12 (s, 3H); LCMS: 397.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.33 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 95.1% RT=9.15 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +23.36 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 112
Synthesis of 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (31 mg, 0.03 mmol) and Xantphos (59 mg, 0.10 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(4-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.68 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (278 mg, 1.37 mmol) and cesium carbonate (313 mg, 0.96 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 16%) as an off-white solid. LCMS: 531.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.70 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.95 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 112 was separated using a Chiralpak IA (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 112A (Fraction I (−)) and the compound of Example 112B (Fraction II (+)).
Example 112A
Synthesis of (−)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 112A was produced as described in Example 112. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.80 (s, 1H), 7.72 (s, 1H), 7.66-7.61 (m, 3H), 7.33 (d, 1H), 7.25 (d, 1H), 7.19 (d, 1H), 6.96 (s, 1H), 5.10-5.08 (m, 1H), 4.31 (d, 1H), 4.11 (d, 1H), 3.82 (s, 3H), 3.08 (s, 3H), 2.21 (s, 3H); Mass (ESI): 531.7 [M+1]; LCMS: 531.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.26 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.96 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100.0% RT=32.42 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −120.48 (c=0.25, CH2Cl2).
Example 112B
Synthesis of (+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 112B was produced as described in Example 112. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.80 (s, 1H), 7.72 (s, 1H), 7.66-7.61 (m, 3H), 7.33 (d, 1H), 7.25 (d, 1H), 7.19 (d, 1H), 6.96 (s, 1H), 5.10-5.08 (m, 1H), 4.31 (d, 1H), 4.11 (d, 1H), 3.82 (s, 3H), 3.08 (s, 3H), 2.21 (s, 3H); Mass (ESI): 531.7 [M+1]; LCMS: 531.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.36 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.94 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 95.1% RT=36.81 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +117.72 (c=0.25, CH2Cl2).
Example 113
Synthesis of (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (56 mg, 0.10 mmol) in 1, 4-dioxane (0.75 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.65 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (250 mg, 1.31 mmol) and cesium carbonate (298 mg, 0.91 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 3% MeOH: CH2Cl2 to afford (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (36 mg, 14%) as an off-white solid. The product was further purified by Chiralpak IA (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase). 1H-NMR (DMSO-d6, 400 MHz): δ 9.31 (s, 1H), 8.04-8.00 (m, 1H), 7.75 (s, 1H), 7.60 (s, 1H), 7.51 (d, 1H), 7.38 (t, 1H), 7.12 (s, 1H), 4.21 (d, 1H), 3.89 (d, 1H), 3.75-3.71 (m, 1H), 3.54-3.50 (m, 1H), 3.48-3.43 (m, 1H), 3.30 (s, 3H), 3.18 (s, 3H), 2.15 (s, 3H); Mass (ESI): 385.4 [M+1]; LCMS: 385.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.24 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.26 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=10.07 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +20.36 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 114
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (34 mg, 0.03 mmol) and Xantphos (64 mg, 0.11 mmol) in 1, 4-dioxane (2 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.74 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (301 mg, 1.48 mmol), cesium carbonate (338 mg, 1.00 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 4% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (70 mg, 21%) as a pale yellow solid. UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.29 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 114 was separated using a phenominex silica (250×20 mm: 5 μm; (50 mg loading; hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 114A (Fraction I (−)) and the compound of Example 114B (Fraction II (+)).
Example 114A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 114A was produced as described in Example 114. Analytical data for product Fraction I (−): 1H NMR (CD3OD, 400 MHz) δ7.74 (s, 1H), 7.65 (s, 1H), 7.49 (s, 1H), 7.21-7.14 (m, 2H), 6.95 (s, 1H), 4.40 (d, 1H), 3.96 (t, 2H), 3.84 (s, 3H), 3.82-3.80 (m, 1H), 3.40-3.30 (m, 3H), 3.29 (s, 3H), 2.23 (s, 3H), 2.10-2.00 (m, 1H), 1.66-1.44 (m, 4H); Mass (ESI): 437.4 [M+1]; LCMS: 437.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.92 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.29 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: 98.5% RT=11.56 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −70.51 (c=0.25, CH2Cl2).
Example 114B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 114B was produced as described in Example 114. Analytical data for product Fraction II (+): 1H NMR (CD3OD, 400 MHz) δ 7.74 (s, 1H), 7.65 (s, 1H), 7.49 (s, 1H), 7.21-7.14 (m, 2H), 6.95 (s, 1H), 4.40 (d, 1H), 3.96 (t, 2H), 3.84 (s, 3H), 3.82-3.80 (m, 1H), 3.40-3.30 (m, 3H), 3.29 (s, 3H), 2.23 (s, 3H), 2.10-2.00 (m, 1H), 1.66-1.44 (m, 4H); Mass (ESI): 437.4 [M+1]; LCMS: 437.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.98 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.30 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: 98.2% RT=17.66 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: 71.82 (c=0.25, CH2Cl2).
Example 115
Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (69 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 4-(4-methyl-1H-imidazol-1-yl) aniline (274 mg, 1.58 mmol) and cesium carbonate (361 mg, 1.10 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (5 mL) and extracted with EtOAc (2×5 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 4% MeOH: CH2Cl2 to afford 8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (90 mg, 25%) as an off-white solid. LCMS: 453.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.84 min 5 mM NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C18, 150×4.6 mm, 5 μm); RT 10.81 min. ACN: 5 mM Aq NH4OAc; 1 mL/min; TLC: 5% MeOH/DCM (Rf: 0.3).
Racemic compound of Example 115 was separated using a Chiralpak ADH (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 60:40) as mobile phase) to provide the compound of Example 115A (Fraction I (−)) and the compound of Example 115B (Fraction II (+)).
Example 115A
Synthesis of (−)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 115A was produced as described in Example 115. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.90 (s, 1H), 7.80 (d, 2H), 7.60 (s, 1H), 7.40 (d, 2H), 7.20 (s, 1H), 7.07-7.00 (m, 2H), 4.75-4.72 (m, 1H), 4.21 (d, 2H), 3.17 (s, 3H), 2.25 (s, 3H); Mass (ESI): 453.4 [M+1]; LCMS: 453.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C18, 2.1×50 mm, 1.7 μm); RT 1.62 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100.0% RT=18.48 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −134.76 (c=0.25, CH2Cl2).
Example 115B
Synthesis of (+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 115B was produced as described in Example 115. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.90 (s, 1H), 7.80 (d, 2H), 7.60 (s, 1H), 7.40 (d, 2H), 7.20 (s, 1H), 7.07-7.00 (m, 2H), 4.75-4.72 (m, 1H), 4.21 (s, 2H), 3.17 (s, 3H), 2.25 (s, 3H); Mass (ESI): 453.4 [M+1]; LCMS: 453.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C18, 2.1×50 mm, 1.7 μm); RT 1.61 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.5% RT=24.92 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +122.01 (c=0.25, CH2Cl2).
Example 116
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (57 mg, 0.06 mmol) and Xantphos (108 mg, 0.18 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 110° C. for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.25 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (507 mg, 2.51 mmol), cesium carbonate (570 mg, 1.75 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 24 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 0-5% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 28%) an off-white solid. LCMS: 367.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.84 min. 5 mM Aq NH4OAc: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 116 was separated using a Chiralpak ADH (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 116A (Fraction I (−)) and the compound of Example 116B (Fraction II (+)).
Example 116A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 116A was produced as described in Example 116. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.73 (d, 1H), 7.65 (s, 1H), 7.49 (s, 1H), 7.19 (d, 2H), 6.96 (s, 1H), 4.02-4.00 (m, 2H), 3.85 (s, 3H), 3.69-3.62 (m, 1H), 3.21 (s, 3H), 2.13 (s, 3H), 1.32 (d, 3H); Mass (ESI): 367.4 [M+1]; LCMS: 367.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC HSS-T3, 100×2.1 mm, 1.8μ); RT 3.14 min. ACN: 0.025% TFA (Aq); 1.0 mL/min; Chiral HPLC: 98.1% RT=10.79 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D22.99: −2.91 (c=0.25, CH2Cl2).
Example 116B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 116B was produced as described in Example 116. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.73 (d, 2H), 7.65 (s, 1H), 7.49 (s, 1H), 7.19 (d, 2H), 6.95 (s, 1H), 4.02-4.00 (m, 2H), 3.85 (s, 3H), 3.69-3.62 (m, 1H), 3.21 (s, 3H), 2.13 (s, 3H), 1.32 (d, 3H); Mass (ESI): 367.4 [M+1]; LCMS: 367.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC HSS-T3, 100×2.1 mm, 1.8μ); RT 3.14 min. ACN: 0.025% TFA (Aq); 1.0 mL/min; Chiral HPLC: 98.1% RT=13.70 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D23.02: +2.43 (c=0.25, CH2Cl2).
Example 117
Synthesis of 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (15 mg, 0.01 mmol) and Xantphos (29 mg, 0.05 mmol) in 1, 4-dioxane (1 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-7-(4-fluoro-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.34 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (138 mg, 0.68 mmol), cesium carbonate (155 mg, 0.47 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 8% MeOH: CH2Cl2 to afford 7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (40 mg, 25%) as an off-white solid. LCMS: 461.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.50 min. 5 mM NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5 μm); RT 10.97 min. ACN: 5 mM Aq NH4OAc; 1.0 ml/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 117 was separated using a Chiralpak IA (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: THF:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 117A (Fraction I (−)) and the compound of Example 117B (Fraction II (+)).
Example 117A
Synthesis of (−)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 117A was produced as described in Example 117. Analytical data for product Fraction I (−): 1H NMR (CD3OD, 400 MHz) δ 7.76 (s, 1H), 7.67 (s, 1H), 7.58 (s, 1H), 7.24 (d, 1H), 7.21 (d, 1H), 7.04-6.88 (m, 3H), 6.86-6.80 (m, 1H), 4.99-4.97 (m, 1H), 4.24-4.18 (m, 1H), 4.14-4.08 (m, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.43 (s, 3H), 2.23 (m, 3H); Mass (ESI): 461.6 [M+1]; LCMS: 461.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.46 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C18, 150×4.6 mm, 5 μm); RT 10.97 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.5% RT=17.00 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −154.32 (c=0.25, CH2Cl2).
Example 117B
Synthesis of (+)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 117B was produced as described in Example 117. Analytical data for product Fraction II (+): 1H NMR (CD3OD, 400 MHz) δ 7.76 (s, 1H), 7.67 (s, 1H), 7.58 (s, 1H), 7.24 (d, 1H), 7.21 (d, 1H), 7.04-6.88 (m, 3H), 6.86-6.80 (m, 1H), 4.99-4.97 (m, 1H), 4.24-4.18 (m, 1H), 4.14-4.08 (m, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.43 (s, 3H), 2.23 (m, 3H); Mass (ESI): 461.6 [M+1]; LCMS: 461.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.46 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C18, 150×4.6 mm, 5 μm); RT 10.97 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.2% RT=19.06 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) THF:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +143.12 (c=0.25, CH2Cl2).
Example 118
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
A dry vial charged with Pd2(dba)3 (34 mg, 0.03 mmol) and Xantphos (65 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature was degassed and the resultant reaction mixture was stirred at 120° C. for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.75 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (290 mg, 1.51 mmol), cesium carbonate (343 mg, 1.05 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 4% MeOH: CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 26%) as an off-white solid. LCMS: 471.4 (M+1); (column; Zorbax SB C-18 (150×4.6 mm, 5.0 μm); RT 11.64 min 5 mM Aq NH4OAc: ACN; 1.0 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 118 was separated using a Chiralpak ADH (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 55:45) as mobile phase) to provide the compound of Example 118A (Fraction I (+)) and the compound of Example 118B (Fraction II (−)).
Example 118A
Synthesis of (+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 118A was produced as described in Example 118. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.98 (m, 1H), 7.75 (s, 1H), 7.61 (s, 1H), 7.42-7.40 (m, 1H), 7.35-7.30 (m, 1H), 7.06-7.00 (m, 3H), 4.74-4.71 (m, 1H), 4.20 (s, 2H), 3.15 (s, 3H), 2.22 (s, 3H); Mass (ESI): 471.4 [M+1]; LCMS: 471.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C18, 2.1×50 mm, 1.7 μm); RT 1.72 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=13.95 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 55:45); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +103.31 (c=0.25, CH2Cl2).
Example 118B
Synthesis of (−)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 118B was produced as described in Example 118. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.98 (m, 1H), 7.75 (s, 1H), 7.61 (s, 1H), 7.42-7.40 (m, 1H), 7.35-7.30 (m, 1H), 7.06-7.00 (m, 3H), 4.74-4.71 (m, 1H), 4.20 (s, 2H), 3.15 (s, 3H), 2.22 (s, 3H); Mass (ESI): 471.4 [M+1]; LCMS: 471.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C18, 2.1×50 mm, 1.7 μm); RT 1.71 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100%=25.41 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 55:45); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −93.40 (c=0.25, CH2Cl2).
Example 119
Synthesis of 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine




Synthesis of 3-methoxy-2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine
To a stirred solution of 2-chloro-3-methoxy-5-nitropyridine (2 g, 10.60 mmol) in DMSO (40 mL) under an argon atmosphere were added potassium carbonate (3.65 g, 26.51 mmol) and 4-methyl-1H-imidazole (1 g, 12.72 mmol) at room temperature. The reaction mixture was stirred at 45° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (40 mL) to obtain solid which was filtered and dried in vacuo to afford 3-methoxy-2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine (1.8 g, 72%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.92-8.90 (m, 1H), 8.45 (s, 1H), 8.36-8.32 (m, 1H), 7.68 (s, 1H), 4.10 (s, 3H), 2.20 (s, 3H); LC-MS: 235 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.09 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine
To a stirred solution of 3-methoxy-2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine (1.8 g, 7.69 mmol) in acetic acid (18 mL) under an argon atmosphere was added iron powder (4.3 g, 7.69 mmol) at room temperature. The reaction mixture was stirred at 50° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated sodium bicarbonate solution (50 mL) and extracted with 10% MeOH: CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (1.3 g, 83%) as a brown solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.83 (s, 1H), 7.37 (s, 1H), 7.20 (s, 1H), 6.78 (s, 1H), 5.57-5.53 (m, 2H), 3.79 (s, 3H), 2.16 (s, 3H); LC-MS: 205 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5 μm); RT 5.69 min. 0.05% aq TFA: ACN; 1.0 mL/min); UPLC (column; Acquity UPLC HSS T3 2.1×100 mm, 1.8μ); RT 2.93 min. ACN: 0.025% TFA (Aq); 0.30 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.1).
Example 120
Synthesis of 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine




Synthesis of 2, 6-dibromopyridin-3-amine
To a stirred solution of pyridin-3-amine (20.0 g, 0.21 mol) in CCl4 (200 mL) under an argon atmosphere was added N-bromosuccinimide (82.87 g, 0.42 mol) portion wise at 0° C. for 20 min. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by silica gel column chromatography using 5-8% EtOAc:hexanes to afford 2, 6-dibromopyridin-3-amine (18 g, 34%) as a brown solid. 1H-NMR (CDCl3, 400 MHz): δ 7.24 (d, 1H), 6.92 (d, 1H), 4.15 (br s, 2H); TLC: 30% EtOAc:hexane (Rf: 0.35).
Synthesis of 6-bromo-2-methoxypyridin-3-amine
To a stirred solution of 2, 6-dibromopyridin-3-amine (38 g, 0.188 mol) in 1, 4-dioxane (400 mL) under an argon atmosphere was added sodium methoxide (70.55 g, 1.30 mol) at room temperature. The reaction mixture was stirred at reflux for 8 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with ice cold water (200 mL) and extracted with EtOAc (3×200 mL). The combined organic extracts were washed with cold water (2×100 mL), dried over sodium sulfate and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 6-bromo-2-methoxypyridin-3-amine (13 g, 42%) as a brown solid. 1H-NMR (CDCl3, 400 MHz): δ 6.87 (d, 1H), 6.76 (d, 1H), 4.01 (s, 3H), 3.75 (br s, 2H); TLC: 20% EtOAc:hexane (Rf: 0.5).
Synthesis of N-(6-bromo-2-methoxypyridin-3-yl) formamide
To a stirred solution of 6-bromo-2-methoxypyridin-3-amine (13.0 g, 64.03 mmol) in formic acid (39 mL) under an argon atmosphere was added copper oxide (2.6 g, 32.60 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with ice cold water (100 mL) and extracted with EtOAc (3×200 mL). The combined organic extracts were washed with cold water (100 mL) and dried over sodium sulfate, filtered and concentrated in vacuo to obtain N-(6-bromo-2-methoxypyridin-3-yl) formamide (10.8 g, 73%) as a brown solid used in the next step without further purification. 1H-NMR (CDCl3, 400 MHz): δ 8.49-8.48 (m, 2H), 8.16 (s, 1H), 7.09 (d, 1H), 4.06 (s, 3H); TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of N-(6-bromo-2-methoxypyridin-3-yl)-N-(2-oxopropyl) formamide
To a stirred solution of N-(6-bromo-2-methoxypyridin-3-yl) formamide (10.0 g, 43.36 mmol) in DMF (100 mL) under an argon atmosphere were added cesium carbonate (27.56 g, 84.53 mmol) and potassium iodide (0.88 g, 5.20 mmol) at 0° C. After 20 min, a solution of chloroacetone (8.02 g, 86.73 mmol) in DMF (20 mL) was added to the reaction mixture at room temperature. The reaction mixture was stirred at room temperature for 12 h. After consumption of the starting material (monitored by TLC), the reaction mixture was poured into cold water (100 mL) and extracted with EtOAc (3×100 mL). The combined organic extracts were washed with cold water (100 mL), dried over sodium sulfate, filtered and concentrated in vacuo to obtain N-(6-bromo-2-methoxypyridin-3-yl)-N-(2-oxopropyl) formamide (11.5 g, crude) as a brown solid used in the next step without further purification. TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of 6-bromo-2-methoxy-3-(4-methyl-M-imidazol-1-yl) pyridine
To a stirred solution of N-(6-bromo-2-methoxypyridin-3-yl)-N-(2-oxopropyl) formamide (18 g, 62.69 mmol) in AcOH (60 mL) under an argon atmosphere was added ammonium acetate (24 g, 3.11 mmol) at room temperature and then stirred at 120° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with cold water (100 mL) and extracted with EtOAc (3×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 6-bromo-2-methoxy-3-(4-methyl-1H-imidazol-1-yl) pyridine (10 g, 60%) as a white solid.
1H-NMR (DMSO d6, 400 MHz): δ7.90 (s, 1H), 7.81 (d, 1H), 7.38 (d, 1H), 7.21 (s, 1H), 3.94 (s, 3H), 2.14 (s, 3H); TLC: 60% EtOAc:hexane (Rf: 0.4).
Synthesis of 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine
To a stirred solution of 6-bromo-2-methoxy-3-(4-methyl-1H-imidazol-1-yl) pyridine (10 g, 37.29 mmol) in ethylene glycol/NH3 (50 mL) under an argon atmosphere was added copper (I) oxide (106 mg, 0.74 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (3×150 mL). The combined organic extracts were washed with cold water (2×100 mL), dried over sodium sulfate and concentrated in vacuo. The crude material was purified by column chromatography using 60-80% EtOAc:hexanes to afford 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (5.0 g, 66%) as a white solid. 1H-NMR (DMSO d6, 400 MHz): δ 7.54 (s, 1H), 7.37 (d, 1H), 6.92 (s, 1H), 6.18 (br s, 2H), 6.05 (d, 1H), 3.78 (s, 3H), 2.12 (s, 3H); TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Example 121
Synthesis of 6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-amine




Synthesis of 6-methoxy-5-(4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl) pyridin-2-amine
To a stirred solution of 5-bromo-6-methoxypyridin-2-amine (3.5 g, 17.24 mmol) in 1, 4-dioxane (250 mL) under an argon atmosphere were added Bis (pinacolato) diboron (8.7 g, 34.48 mmol) and potassium acetate (5.08 g, 57.72 mmol) at room temperature and purged under an argon atmosphere for 30 min. Then Pd(dppf)Cl2 (3.8 g, 5.17 mmol) was added to the reaction mixture and stirred at 100° C. for 4 h. The reaction mixture was brought to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with EtOAc (100 mL), filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes (neutralized with triethylamine) to afford 6-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-amine (1.3 g, 30%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.75 (d, 1H), 6.01 (d, 1H), 4.44 (br s, 2H), 3.88 (s, 3H), 1.31 (s, 12H); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-amine
To a stirred solution of 4-chloro-2-methylpyrimidine (500 mg, 3.88 mmol) in DME:EtOH:H2O (6:2:1) (135 mL) under an argon atmosphere were added 6-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-amine (1.4 g, 5.83 mmol) and potassium carbonate (1.6 g, 11.64 mmol) at room temperature and purged under an argon atmosphere for 30 min. Then Pd(PPh3)2Cl2 (272 mg, 0.38 mmol) was added to the reaction mixture at room temperature. The reaction mixture was stirred at 100° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with EtOAc (100 mL), filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford 6-methoxy-5-(2-methylpyrimidin-4-yl)pyridin-2-amine (540 mg, 64%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 8.51 (d, 1H), 8.41 (d, 1H), 7.81 (d, 1H), 6.20 (d, 1H), 4.60 (br s, 2H), 3.99 (s, 3H), 2.71 (s, 3H); LCMS: 217.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.69 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.3).
Example 122
Synthesis of 5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine




Synthesis of 5,6-dibromopyridin-2-amine
To a stirred solution of 6-bromopyridin-2-amine (5 g, 28.90 mmol) in DMF (75 mL) under an argon atmosphere was added N-bromosuccinimide (35 mg, 1.04 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with ice cold water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford 5,6-dibromopyridin-2-amine (6.1 g, 85%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.51 (d, 1H), 6.32 (d, 1H), 4.60 (br s, 2H); LCMS: 252.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.04 min 0.05% Aq TFA: ACN; 0.80 mL/min).
Synthesis of 5-bromo-6-methoxypyridin-2-amine
A mixture of sodium metal (1.1 g, 47.80 mmol) in MeOH (45 mL) under an argon atmosphere was stirred at −20° C. to 0° C. for 4 h. The reaction mixture was stirred at 120° C. for 24 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (100 mL), neutralized with a 2 M HCl solution (20 mL) and extracted with EtOAc (2×200 mL). The combined organic extracts were dried were sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 5-bromo-6-methoxypyridin-2-amine (3.5 g, 72%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.48 (d, 1H), 5.98 (d, 1H), 4.30 (s, 2H), 3.90 (s, 3H); LCMS: 205.2 (M+2); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.52 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine
To a stirred solution of 5-bromo-6-methoxypyridin-2-amine (2 g, 9.85 mmol) in CH3CN: water (2:1, 30 mL) under an argon atmosphere were added potassium carbonate (2.7 g, 19.70 mmol), S-phos (404 mg, 0.98 mmol), Pd(OAc)2 (332 mg, 0.49 mmol) and degassed for 30 min at room temperature. Then (1-methyl-4-(4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl)-1H-pyrazole (6 g, 23.90 mmol) was added to the reaction mixture at room temperature. The reaction mixture was stirred at reflux for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was recrystallized with CH2Cl2 (2×30 mL) to obtain 6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine (1.2 g, 60%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.82 (s, 1H), 7.69 (s, 1H), 7.55 (d, 1H), 6.03 (d, 1H), 5.80 (s, 2H), 3.82 (s, 3H), 3.80 (s, 3H); LCMS: 205 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.19 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.2).
Example 123
Synthesis of 6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine




Synthesis of 2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine
To a stirred solution of 2-bromo-5-nitropyridine (10 g, 0.05 mol) in DMSO (100 mL) under an argon atmosphere were added 4-methyl imidazole (16.3 g, 0.2 mol) and potassium carbonate (20.5 g, 0.15 mol) at room temperature. The reaction mixture was stirred for 12 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (100 mL) and the solid was filtered. The filtrate was extracted with EtOAc (2×200 mL), the combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine (8 g) as a yellow solid used in the next step without further purification. TLC: 30% EtOAc:hexane (Rf: 0.45).
Synthesis of 6-(4-methyl-M-imidazol-1-yl) pyridin-3-amine
To a stirred solution of 2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine (8 g, 0.039 mol) in MeOH (80 mL) under an argon atmosphere was added SnCl2 (29.6 g, 0.156 mol) at room temperature. The reaction mixture was refluxed for 6 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was washed with ether to afford 6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (3 g, 44%) as a brown solid. TLC: 30% EtOAc:hexane (Rf: 0.1).
Example 124
Synthesis of 5-amino-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




Synthesis of 2-(4-methyl-1H-imidazol-1-yl)-5-nitrobenzonitrile
To a stirred solution of 2-fluoro-5-nitrobenzonitrile (2 g, 12.04 mmol) in CH3CN (20 mL) under an argon atmosphere were added potassium carbonate (3.32 g, 24.02 mmol) and 4-methyl-1H-imidazole (1.97 g, 24.02 mmol) at room temperature. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with a 1N sodium hydroxide solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were washed with brine (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with ethanol: water (1:1, 20 mL) to afford 2-(4-methyl-1H-imidazol-1-yl)-5-nitrobenzonitrile (1.6 g, 58%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.92 (s, 1H), 8.61 (d, 1H), 8.15 (s, 1H), 7.91 (d, 1H), 7.49 (s, 1H), 2.20 (s, 3H); LCMS: 228.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.03 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 2.1×50 mm, 1.7 μm); RT 1.04 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 5-amino-2-(4-methyl-1H-imidazol-1-yl) benzonitrile
To a stirred solution of 3-methoxy-2-(1-methyl-1H-pyrazol-4-yl)-5-nitropyridine (2.5 g, 10.68 mmol) in EtOAc (50 mL) under an argon atmosphere was added 10% Pd/C (1.2 g) at room temperature. The reaction mixture was stirred for 5 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered, washed with EtOAc (50 mL) and 5% MeOH: CH2Cl2 (50 mL). The filtrate was concentrated in vacuo. The crude material was washed with n-pentane (2×20 mL) to afford 5-amino-2-(4-methyl-1H-imidazol-1-yl) benzonitrile (2 g, 92%) as a brown solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.71 (s, 1H), 7.22 (d, 1H), 7.10 (s, 1H), 6.95 (s, 1H), 6.93-6.89 (m, 1H), 5.85 (s, 2H), 2.13 (s, 3H); LCMS: 199.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.61 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC HSS T3 (100×2.1 mm, 1.8μ); RT 2.97 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 125
Synthesis of 5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine




Synthesis of 5-(4-methyl-M-imidazol-1-yl) pyridin-2-amine
To a stirred solution of 5-iodopyridin-2-amine (1 g, 4.54 mmol) in DMSO (9 mL) under an argon atmosphere were added 4-methyl-1H-imidazole (521 mg, 6.36 mmol), copper iodide (172 mg, 0.90 mmol), L-proline (209 mg, 0.18 mmol) and potassium carbonate (1.2 g, 9.09 mmol) at room temperature. The reaction mixture was stirred at 90° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (30 mL) and extracted with EtOAc (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (500 mg, 63%) as a brown solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.09 (s, 1H), 7.84 (s, 1H), 7.57-7.54 (m, 1H), 7.20 (s, 1H), 6.53-6.51 (m, 1H), 6.12 (s, 2H), 2.13 (s, 3H); LCMS: 175.1 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.67 min. 5 mM NH4OAc: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Example 126
Synthesis of 5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-amine




Synthesis of 3-methoxy-5-nitro-2-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridine
To a stirred solution of 2-chloro-3-methoxy-5-nitropyridine (2 g, 10.60 mmol) in DMSO (30 mL) under an argon atmosphere were added potassium carbonate (6.70 g, 48.61 mmol) and 4-(trifluoromethyl)-1H-imidazole (1.7 g, 12.76 mmol) at room temperature. The reaction mixture was stirred at 50° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL). The obtained solid was filtered and dried in vacuo to afford 3-methoxy-5-nitro-2-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridine (1.4 g, 46%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.97 (s, 1H), 8.65 (s, 1H), 8.45 (s, 1H), 8.44 (s, 1H), 4.11 (s, 3H); LCMS: 288.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.46 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-amine
To a stirred solution of 3-methoxy-5-nitro-2-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridine (1.4 g, 4.86 mmol) in MeOH (20 mL) under an argon atmosphere was added 10% Pd/C (300 mg) at room temperature. The suspension was stirred under a H2 atmosphere (balloon pressure) for 16 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite. The filtrate was concentrated in vacuo. The residue was washed with ether (2×30 mL) and dried in vacuo to obtain 5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-amine (1.1 g, 88%) as an off white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 8.13 (s, 1H), 8.07 (s, 1H), 7.41 (s, 1H), 6.81 (s, 1H), 5.70 (s, 2H), 3.80 (s, 3H); LCMS: 258.9 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.76 min. 0.05% Aq TFA: ACN; 0.80 mL/min) TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 127
Synthesis of 1-(5-amino-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile




Synthesis of 1-(3-methoxy-5-nitropyridin-2-yl)-1H-imidazole-4-carbonitrile
To a stirred solution of 2-chloro-3-methoxy-5-nitropyridine (1.5 g, 79.78 mmol) in DMSO (15 mL) under an argon atmosphere were added potassium carbonate (4.4 g, 31.91 mmol) and 1H-imidazole-4-carbonitrile (890 mg, 9.57 mmol) at room temperature. The reaction mixture was stirred at 50° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL). The obtained solid was filtered and dried in vacuo to obtain 1-(3-methoxy-5-nitropyridin-2-yl)-1H-imidazole-4-carbonitrile (1.1 g, 56%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.97 (s, 1H), 8.86 (s, 1H), 8.67 (s, 1H), 8.47 (s, 1H), 4.11 (s, 3H); LCMS: 245.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.96 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexane (Rf: 0.4).
Synthesis of 1-(5-amino-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile
To a stirred solution of 1-(3-methoxy-5-nitropyridin-2-yl)-1H-imidazole-4-carbonitrile (1.1 g, 4.48 mmol) in MeOH (12 mL) under an argon atmosphere was added 10% Pd/C (300 mg) at room temperature. The suspension was stirred under a H2 atmosphere (balloon pressure) for 4 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite. The filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 1-(5-amino-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile (700 mg, 72%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.44 (s, 1H), 8.21 (s, 1H), 7.43 (s, 1H), 6.83 (s, 1H), 5.75 (s, 2H), 3.81 (s, 3H); UPLC (column; Acquity BEH C18 50×2.1 mm, 1.7 μm); RT 1.39 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 128
Synthesis of 4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) aniline




Synthesis of N-(4-nitro-2-(trifluoromethoxy) phenyl) formamide
To a stirred solution of 4-nitro-2-(trifluoromethoxy) aniline (5 g, 22.52 mmol) in formic acid (25 mL) under an argon atmosphere was added copper oxide (1.61 g, 11.26 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 8 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL), neutralized with a sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain N-(4-nitro-2-(trifluoromethoxy) phenyl) formamide (5 g, 89%) as a yellow solid used in the next step without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 10.60 (s, 1H), 9.20 (s, 1H), 8.44 (s, 1H), 8.05 (d, 1H), 7.71 (d, 1H); TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of N-(4-nitro-2-(trifluoromethoxy) phenyl)-N-(2-oxopropyl) formamide
To a stirred solution of N-(4-nitro-2-(trifluoromethoxy) phenyl) formamide (5 g, 20.00 mmol) in DMF (30 mL) under an argon atmosphere was added cesium carbonate (12.71 g, 39.00 mmol) and potassium iodide (398 mg, 2.40 mmol) at 0° C. The reaction mixture was stirred for 20 min at 0° C. and chloroacetone (3.7 g, 40.00 mmol) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 12 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford N-(4-nitro-2-(trifluoromethoxy) phenyl)-N-(2-oxopropyl) formamide (4 g, 65%) as a pale yellow solid. LCMS: 307.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.66 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of 4-methyl-1-(4-nitro-2-(trifluoromethoxy) phenyl)-1H-imidazole
To a stirred solution of N-(4-nitro-2-(trifluoromethoxy) phenyl)-N-(2-oxopropyl) formamide (4 g, 13.07 mmol) in acetic acid (30 mL) under an argon atmosphere was added ammonium acetate (5 g, 65.35 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a sodium bicarbonate solution (100 mL) and extracted with EtOAc (2×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford 4-methyl-1-(4-nitro-2-(trifluoromethoxy) phenyl)-1H-imidazole (1.8 g, 49%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.45 (s, 1H), 8.38 (d, 1H), 7.96 (s, 1H), 7.90 (d, 1H), 7.30 (s, 1H), 2.19 (s, 3H); LCMS: 288.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.81 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexane (Rf: 0.2).
Synthesis of 4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) aniline
To a stirred solution of 4-methyl-1-(4-nitro-2-(trifluoromethoxy) phenyl)-1H-imidazole (1.8 g, 6.27 mmol) in MeOH (30 mL) under an argon an atmosphere was added 10% Pd/C (450 mg) at room temperature. The suspension was stirred under a H2 atmosphere (balloon pressure) for 7 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite. The filtrate was concentrated in vacuo. The crude material was washed with 20% ether: pentane to afford 4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) aniline (1.1 g, 71%) as a pale yellow solid. 1H-NMR (CD3OD, 500 MHz): δ 7.78 (s, 1H), 7.19 (d, 1H), 7.03 (s, 1H), 6.73-6.70 (m, 2H), 2.15 (s, 3H); LCMS: 258 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18 50×2.1 mm, 1.7 μm); RT 1.46 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 129
Synthesis of 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine




Synthesis of 4-methoxypyridine 1-oxide
To a stirred solution of 4-methoxypyridine (5 g, 45.87 mmol) in acetic acid (25 mL) under an argon atmosphere was added a 30% hydrogen peroxide solution (4.2 mL) at room temperature. The reaction mixture was stirred at reflux for 24 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo to afford 4-methoxypyridine 1-oxide (5 g, 88%) as a yellow liquid. LCMS: 125.9 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5.0 μm); RT 5.02 min. 0.05% Aq TFA: ACN; 1.0 mL/min); TLC: 5% MeOH: CH2Cl2 (Rf: 0.1).
Synthesis of 4-methoxypicolinonitrile
To a stirred solution of 4-methoxypyridine 1-oxide (5 g, 40.00 mmol) in CH2Cl2 (75 mL) were added TMSCN (6.66 mL) and dimethyl carbonyl chloride (3.75 mL) at 0° C. under an argon atmosphere. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a 10% potassium carbonate solution (200 mL) and extracted with CH2Cl2 (3×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 25% EtOAc:hexanes to afford 4-methoxypicolinonitrile (4 g, 75%) as a white solid. 1H-NMR (CDCl3, 500 MHz): δ 8.50 (d, 1H), 7.20 (s, 1H), 7.00-6.99 (m, 1H), 3.89 (s, 3H); LCMS: 135 (M+1); (column; X-bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.19 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Synthesis of 5-bromo-4-methoxypicolinamide
To a stirred solution of 4-methoxypicolinonitrile (4 g, 30.00 mmol) in concentrated sulfuric acid (15 mL) under an argon atmosphere was added N-bromosuccinimide (6.95 g, 39.00 mmol) at 0° C. The reaction mixture was stirred at 55° C. for 18 h. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with a 8 N sodium hydroxide solution to pH 8 at 0° C. The obtained solid was filtered and dried in vacuo to afford 5-bromo-4-methoxypicolinamide (3 g, 43%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.62 (s, 1H), 8.13-8.10 (m, 2H), 7.70 (s, 1H), 4.01 (s, 3H); LCMS: 232.9 (M+2); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.60 min 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 80% EtOAc:hexanes (Rf: 0.6).
Synthesis of 5-bromo-4-methoxypicolinonitrile
To a stirred solution of oxalyl chloride (3.3 mL) in DMF (40 mL) under an argon atmosphere was added pyridine (5.3 mL) drop wise at 0° C. After stirring for 10 min, 5-bromo-4-methoxypicolinamide (3 g, 12.98 mmol) was added at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 5-bromo-4-methoxypicolinonitrile (2 g, 72%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.61 (s, 1H), 7.19 (s, 1H), 4.00 (s, 3H); LCMS: 212.8 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 80% EtOAc:hexanes (Rf: 0.7).
Synthesis of 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) picolinonitrile
To a stirred solution of 4-methyl-1H-imidazole (580 mg, 7.04 mmol) in acetonitrile (24 mL) under an argon atmosphere were added potassium carbonate (1.3 g, 9.38 mmol) and 18-crown-6 (2.47 g, 9.38 mmol) at room temperature. The reaction mixture was stirred at 60° C. for 2 h. Then 5-bromo-4-methoxypicolinonitrile (1 g, 4.69 mmol) was added to the reaction mixture at room temperature. The reaction mixture was stirred at reflux for 18 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 90% EtOAc:hexanes to afford 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) picolinonitrile (250 mg, 25%) as a yellow solid. 1H-NMR (CDCl3, 500 MHz): δ 8.58 (s, 1H), 7.82 (s, 1H), 7.39 (s, 1H), 6.99 (s, 1H), 401 (s, 3H), 2.23 (s, 3H); LCMS: 215 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: EtOAc (Rf: 0.2).
Synthesis of 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) picolinic acid
To a stirred solution of 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) picolinonitrile (2 g, 9.34 mmol) in MeOH: CH3CN (1:1, 40 mL) under an argon atmosphere was added potassium hydroxide (1.05 g, 18.69 mmol) at room temperature. The reaction mixture was stirred under reflux conditions for 18 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was acidified with concentrated hydrochloric acid (20 mL) to pH 5-6. The obtained solid was filtered and dried in vacuo to afford 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) picolinic acid (1 g, 50%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.73-8.70 (m, 2H), 7.83 (s, 1H), 2.58 (s, 1H), 4.00 (s, 3H), 2.25 (s, 3H); LCMS: 234 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5.0μ); RT 3.84 min. 0.05% Aq TFA: ACN; 1.0 mL/min); TLC: 5% MeOH: CH2Cl2 (Rf: 0.1).
Synthesis of tert-butyl (4-methoxy-5-(4-methyl-M-imidazol-1-yl) pyridin-2-yl) carbamate
To a stirred solution of 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) picolinic acid (1 g, 4.29 mmol) in toluene: tBuOH (1:1, 13 mL) under an argon atmosphere were added triethylamine (1.5 mL, 10.72 mmol) and diphenylphosphorylazide (1.85 mL, 8.58 mmol) at 0° C. The reaction mixture was stirred for 15 min, then stirred at 65° C. for 2 h. The temperature was raised to 100° C. for 12 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (60 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 3% MeOH: CH2Cl2 to afford tert-butyl (4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl) carbamate (350 mg, 27%) as an off white-solid. 1H-NMR (CDCl3, 400 MHz): δ 8.07 (s, 1H), 7.94-7.90 (m, 1H), 7.78 (s, 1H), 7.57 (s, 1H), 6.83 (s, 1H), 4.96 (s, 3H), 2.30 (s, 3H), 1.52 (s, 9H); LCMS: 305.1 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5.0 μm); RT 6.72 min. 0.05% Aq TFA: ACN; 1.0 mL/min); TLC: 5% MeOH: CH2Cl2 (Rf: 0.5).
Synthesis of 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine
To a stirred solution of tert-butyl (4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl) carbamate (350 mg, 1.15 mmol) in CH2Cl2 (5 mL) under an argon atmosphere was added trifluoroacetic acid (0.3 mL) at 0° C. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with a sodium bicarbonate solution (30 mL) and extracted with MeOH: CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with hexane (2×10 mL) to afford 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (200 mg, 85%) as an off white-solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.72 (s, 1H), 7.50 (s, 1H), 7.89 (s, 1H), 6.10 (d, 3H), 3.73 (s, 3H), 2.10 (s, 3H); LCMS: 205.1 (M+1); (column; X-Bridge C-18 (50×3.0 mm, 3.5 μm); RT 1.99 min. 5 mM NH4OAc: ACN; 0.8 mL/min); TLC: 5% MeOH: CH2Cl2 (Rf: 0.5).
Example 130
Synthesis of 5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine




Synthesis of 3-chloro-2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine
To a stirred solution of 2,3-dichloro-5-nitropyridine (2 g, 10.36 mmol) in CH3CN (30 mL) under an argon atmosphere was added potassium carbonate (2.86 g, 20.72 mmol) and 4-methyl imidazole (1.7 g, 20.72 mmol) at room temperature. The reaction mixture was stirred at room temperature for 10 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with cold water (500 mL) and extracted with EtOAc (2×300 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford 3-chloro-2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine (1.8 g, 73%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 9.20 (s, 1H), 8.69 (s, 1H), 8.39 (s, 1H), 7.51 (s, 1H), 2.30 (s, 3H); LCMS: 238.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.03 min 0.05% Aq TFA: ACN; 0.80 mL/min).
Synthesis of 5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine
To a stirred solution of 3-chloro-2-(4-methyl-1H-imidazol-1-yl)-5-nitropyridine (1.8 g, 7.56 mmol) in THF (29 mL) under an argon atmosphere were added ammonium chloride (820 mg, 15.12 mmol) in water:MeOH (1:1, 72 mL) and zinc powder (1 g, 15.12 mmol) at room temperature. The reaction mixture was stirred for 6 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction was filtered. The filtrate was concentrated in vacuo and the obtained solid filtered and dried in vacuo to afford 5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (1.25 g, 80%) as an off-white solid.
1H-NMR (DMSO-d6, 400 MHz): δ 7.99 (s, 1H), 7.79 (s, 1H), 7.30 (s, 1H), 7.18 (s, 1H), 5.99 (s, 2H), 2.20 (s, 3H); LCMS: 209.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.75 min 5 mM NH4OAc in water: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 131
Synthesis of 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-amine




Synthesis of 3-methoxy-2-(1-methyl-1H-pyrazol-4-yl)-5-nitropyridine
A stirred solution of Pd(OAc)2 (89 mg, 0.13 mmol) and S-phos (273 mg, 0.66 mmol) in CH3CN: H2O (2:1, 60 mL) was purged under an argon atmosphere for 15 min. Then 2-chloro-3-methoxy-5-nitropyridine (2.5 g, 13.29 mmol), 1-methyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole (3.6 g, 17.30 mmol) and potassium carbonate (3.67 g, 26.59 mmol) was added at room temperature. The reaction mixture and stirred at reflux for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were washed with brine (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30-80% EtOAc:hexanes to afford 3-methoxy-2-(1-methyl-1H-pyrazol-4-yl)-5-nitropyridine (2.6 g, 84%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.95 (d, 1H), 8.50 (s, 1H), 8.16 (s, 1H), 8.10 (s, 1H), 4.10 (s, 3H), 3.93 (s, 3H); LCMS: 234.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.94 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 2.1×50 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl)pyridin-3-amine
To a stirred solution of 3-methoxy-2-(1-methyl-1H-pyrazol-4-yl)-5-nitropyridine (2.5 g, 10.68 mmol) in EtOAc (50 mL) under an argon atmosphere was added 10% Pd/C (1.2 g) at room temperature. The suspension placed under an H2 atmosphere (balloon pressure) and stirred for 4 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered and washed with EtOAc (50 mL) and 5% MeOH: CH2Cl2 (50 mL). The filtrate was concentrated in vacuo and the crude material was washed with n-pentane (2×20 mL) to afford 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-amine (2 g, 92%) as a brown solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.96 (s, 1H), 7.80 (s, 1H), 7.51 (s, 1H), 6.62 (s, 1H), 5.27 (s, 2H), 3.81 (s, 3H), 3.80 (s, 3H); LC-MS: 205 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.01 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Acquity UPLC HSS T3 (100×2.1 mm, 1.8μ); RT 2.95 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 132
Synthesis of 3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) aniline




Synthesis of 4-(2-methoxy-4-nitrophenyl)-1-methyl-1H-pyrazole
To a stirred solution of 1-chloro-2-methoxy-4-nitrobenzene (2.4 g, 13.27 mmol) in DMF (24 mL) under an argon atmosphere were added 1-methyl-4-(4, 4, 5, 5-tetramethyl-1, 3, 2-dioxaborolan-2-yl)-1H-pyrazole (3.6 g, 17.25 mmol) and potassium carbonate (2.56 g, 18.57 mmol) at room temperature. The suspension was purged with argon for 30 min. Then Pd(dppf)2Cl2 (970 mg, 1.32 mmol) was added to the reaction mixture and stirred at 150° C. for 18 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford 4-(2-methoxy-4-nitrophenyl)-1-methyl-1H-pyrazole (1.8 g, 58%) as a brown solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.34 (s, 1H), 8.08 (s, 1H), 7.89-7.82 (m, 3H), 4.02 (s, 3H), 3.90 (s, 3H); LC-MS: 233.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.24 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.3).
Synthesis of 3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) aniline
To a stirred solution of 4-(2-methoxy-4-nitrophenyl)-1-methyl-1H-pyrazole (1.7 g, 7.28 mmol) in methanol (20 mL) under an argon atmosphere was added 10% Pd/C (200 mg) at room temperature. The suspension was stirred under a H2 atmosphere (balloon pressure) for 3 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford 3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) aniline (1.1 g, 70%) as a brown solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.81 (s, 1H), 7.63 (s, 1H), 7.18 (d, 1H), 6.25 (s, 1H), 6.15 (d, 1H), 5.02 (s, 2H), 3.80 (s, 3H), 3.78 (s, 3H); LC-MS: 203.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.00 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.2).
Example 133
Synthesis of 3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) aniline




Synthesis of 1-fluoro-2-methoxy-4-nitrobenzene
To a stirred solution of 1-fluoro-2-methoxy-4-nitrobenzene (2.5 g, 14.60 mmol) in DMF (25 mL) under an argon atmosphere were added potassium carbonate (4 g, 29.20 mmol) and 3-methyl-1H-1, 2, 4-triazole (1.2 g, 14.60 mmol) at room temperature. The reaction mixture was stirred at 85° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15-25% EtOAc:hexane to afford 1-fluoro-2-methoxy-4-nitrobenzene (1.2 g, 35%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.87 (s, 1H), 8.10 (d, 1H), 8.00-7.97 (m, 2H), 4.10 (s, 3H), 2.50 (s, 3H); LCMS: 234.9 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.02 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.2).
Synthesis of 3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) aniline
To a stirred solution of 1-fluoro-2-methoxy-4-nitrobenzene (100 mg, 0.42 mmol) in MeOH (3 mL) under an argon atmosphere was added Raney nickel (50 mg) at room temperature. The suspension was stirred under an H2 atmosphere (balloon pressure) for 4 h. After consumption of the starting material (monitored by TLC), the reaction was filtered through celite. The filtrate was concentrated in vacuo to afford 3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) aniline (70 mg, 55%) as an off white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.43 (s, 1H), 7.10 (d, 1H), 6.35 (s, 1H), 6.20 (dd, 1H), 5.44 (s, 2H), 3.70 (s, 3H), 2.25 (s, 3H); LCMS: 204.9 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 0.62 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.1).
Example 134
Synthesis of 3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine




Synthesis of 3, 6-difluoropyridin-2-amine
To a stirred solution of 2,3,6-trifluoropyridine (5 g, 37.59 mmol) in 1, 4-dioxane (20 mL) under an argon atmosphere was added aq ammonia (20 mL) at room temperature. The reaction mixture was stirred at 100° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with cold water (500 mL) and extracted with CH2Cl2 (2×500 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 3,6-difluoropyridin-2-amine (3 g, 62%) as an off-white solid used in the next step without further purification. TLC: 10% EtOAc:hexanes (Rf: 0.5).
Synthesis of 3-fluoro-6-methoxypyridin-2-amine
To a stirred solution of sodium metal (1.06 g, 46.15 mmol) in MeOH (60 mL) under an argon atmosphere was added 3, 6-difluoropyridin-2-amine (3 g, 23.07 mmol) at 0° C. The reaction mixture was stirred at 100° C. for 48 h sealed tube. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (100 mL) and extracted with CH2Cl2 (2×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 3-fluoro-6-methoxypyridin-2-amine (2.5 g, 78%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ7.14 (t, 1H), 8.00 (d, 1H), 4.40 (br s, 2H), 3.80 (s, 3H); TLC: 10% EtOAc:hexanes (Rf: 0.5).
Synthesis of 5-bromo-3-fluoro-6-methoxypyridin-2-amine
To a stirred solution of 3-fluoro-6-methoxypyridin-2-amine (3 g, 21.12 mmol) in DMF (45 mL) under an argon atmosphere was added N-bromosuccinimide (3.78 g, 21.12 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with cold water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 5-bromo-3-fluoro-6-methoxypyridin-2-amine (3.5 g, 76%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.41 (d, 1H), 4.44 (br s, 2H), 3.90 (s, 3H); TLC: 20% EtOAc:hexanes (Rf: 0.5).
Synthesis of 3-fluoro-6-methoxy-5-(1-methyl-M-pyrazol-4-yl) pyridin-2-amine
To a stirred solution of 5-bromo-3-fluoro-6-methoxypyridin-2-amine (3.5 g, 15.83 mmol) in CH3CN: water (2:1, 52 mL) under an argon atmosphere were added potassium carbonate (4.37 g, 31.67 mmol), S-phos (973 mg, 23.70 mmol) and Pd(OAc)2 (532 mg, 0.79 mmol). The mixture was degassed with argon for 30 min, then heated to 80° C. for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford 3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine (2 g, 57%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.90 (s, 1H), 7.33 (s, 1H), 7.63 (d, 1H), 6.00 (s, 2H), 3.83 (s, 3H), 3.80 (s, 3H); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Example 135
Synthesis of 6-amino-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile




Synthesis 6-aminopicolinonitrile
To a stirred solution of 6-bromopyridin-2-amine (1 g, 5.78 mmol) in N, N-dimethyl acetamide (10 mL) were added zinc cyanide (441 mg, 3.75 mmol), zinc dust (94 mg, 1.44 mmol), dppf (128 mg, 0.23 mmol), and Pd2(dba)3 (105 mg, 0.11 mmol). The mixture was purged with argon for 15 min, then stirred at 95° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (100 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford 6-aminopicolinonitrile (580 mg, 84%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.52 (t, 1H), 7.02 (d, 1H), 6.71 (d, 1H), 6.55 (br s, 2H); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 6-amino-3-bromopicolinonitrile
To a stirred solution of 6-aminopicolinonitrile (3.5 g, 29.41 mmol) in CH2Cl2:MeOH (1:1, 70 mL) under an argon atmosphere was added tetrabutylammonium tribromide (17 g, 35.29 mmol) at room temperature. The reaction mixture was stirred at room temperature for 2 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was recrystallized with CH2Cl2 (2×20 mL) to obtain 6-amino-3-bromopicolinonitrile (1.8 g, 31%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 7.74 (d, 1H), 6.70 (d, 1H), 6.60 (br s, 2H); LCMS: 199.8 (M+2); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.69 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 6-amino-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile
To a stirred solution of 6-amino-5-bromopicolinonitrile (1.3 g, 6.59 mmol) in DMF (13 mL) under an argon atmosphere were added copper iodide (502 mg, 2.63 mmol), cesium carbonate (6.4 g, 19.79 mmol) and 4-methyl imidazole (1.6 g, 19.79 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 6-amino-3-(4-methyl-1H-imidazol-1-yl)picolinonitrile (410 mg, 31%) as a pale yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.80 (s, 1H), 7.60 (d, 1H), 7.13 (s, 1H), 6.89 (s, 2H), 6.80 (d, 1H), 2.15 (s, 3H); LCMS: 199.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.18 min 5mAqNH4OAc: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 136
Synthesis of 3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) aniline




Synthesis of 2-(difluoromethyl)-1-fluoro-4-nitrobenzene
To a stirred solution of 2-fluoro-5-nitrobenzaldehyde (3 g, 17.75 mmol) in CH2Cl2 (30 mL) under an argon atmosphere was added DAST (2.8 mL, 21.30 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with cold water (500 mL) and extracted with CH2Cl2 (2×500 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-(difluoromethyl)-1-fluoro-4-nitrobenzene (2.8 g, 82%) as pale brown oil. 1H-NMR (CD3OD, 400 MHz): δ 8.55-8.50 (m, 2H), 7.75 (t, 1H), 7.35 (t, 1H); TLC: 20% EtOAc:hexanes (Rf: 0.5).
Synthesis of 1-(2-(difluoromethyl)-4-nitrophenyl)-4-methyl-1H-imidazole
To a stirred solution of 2-(difluoromethyl)-1-fluoro-4-nitrobenzene (2.8 g, 14.65 mmol) in acetonitrile (50 mL) under an argon atmosphere were added potassium carbonate (2.4 g, 29.31 mmol) and 4-methyl-1H-imidazole (2.4 g, 29.31 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (40 mL). The obtained solid was filtered and dried in vacuo to afford 1-(2-(difluoromethyl)-4-nitrophenyl)-4-methyl-1H-imidazole (1.8 g, 72%) as a yellow solid. LC-MS: 253.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.88 min. 0.05% aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) aniline
To a stirred solution of 1-(2-(difluoromethyl)-4-nitrophenyl)-4-methyl-1H-imidazole (500 mg, 10.68 mmol) in EtOH (15 mL) under an argon atmosphere was added 10% Pd/C (50 mg) at room temperature. The suspension was stirred under a H2 atmosphere (balloon pressure) for 30 h. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered, washed with EtOAc (50 mL) and 5% MeOH: CH2Cl2 (50 mL). The filtrate was concentrated in vacuo. The crude material was washed with n-pentane (2×20 mL) to afford 3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) aniline (400 mg, 90%) as a brown solid. 1H-NMR (CD3OD, 400 MHz): δ 7.51 (s, 1H), 7.02 (d, 1H), 6.93 (s, 1H), 6.88 (s, 1H), 6.73 (d, 1H), 6.53 (t, 1H), 5.69 (br s, 2H), 2.13 (s, 3H); TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 137
Synthesis of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol




Synthesis of (S)-methyl 2-((tert-butoxycarbonyl)amino)-3-methoxypropanoate
To a stirred solution of methyl (tert-butoxycarbonyl)-L-serinate (5 g, 22.80 mmol) in CH3CN (200 mL) under an argon atmosphere were added silver oxide (26 g, 114.15 mmol) and methyl iodide (32 g, 228.10 mmol) at room temperature. The reaction mixture was stirred at room temperature for 24 h in the absence of light. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered and the filtrate concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford (S)-methyl 2-((tert-butoxycarbonyl)amino)-3-methoxypropanoate (2.5 g, 47%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 5.40-5.31 (m, 1H), 4.44-4.38 (m, 1H), 3.80-3.78 (m, 1H), 3.77 (s, 3H), 3.60-3.56 (m, 1H), 3.33 (s, 3H), 1.44 (s, 9H); TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of (R)-3-methoxy-2-(methylamino) propan-1-ol
To a stirred solution of (S)-methyl 2-((tert-butoxycarbonyl)amino)-3-methoxypropanoate (3.8 g, 16.30 mmol) in THF (100 mL) under an argon atmosphere was added lithium aluminum hydride (1.8 g, 48.92 mmol) portion wise at 0° C. The reaction mixture was stirred at 70° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., quenched with water (2 mL), basified with a 15% sodium hydroxide solution (2 mL) and stirred for 30 min and filtered. The filtrate was dried over sodium sulfate, filtered and concentrated in vacuo to obtain (R)-3-methoxy-2-(methylamino) propan-1-ol (1.7 g, 87%) as a colorless liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 3.46-3.32 (m, 2H), 3.30-3.26 (m, 3H), 3.25-3.21 (m, 4H), 2.52-2.48 (m, 1H), 2.30 (s, 3H); TLC: 50% EtOAc:hexane (Rf: 0.2).
Synthesis of 2, 4-dichloropyrimidin-5-ol
To a stirred solution of 2, 4-dichloro-5-methoxypyrimidine (20 g, 111.73 mmol) in CH2Cl2 (280 mL) under an argon atmosphere was added borontribromide (54 mL, 558.65 mmol) drop wise at 0° C. The reaction mixture was refluxed for 24 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., basified with a 1N sodium hydroxide solution and stirred for 1 h. Then the reaction mixture was acidified with acetic acid (pH 2-4) and the aqueous layer was extracted with 5% MeOH: CH2Cl2 (2×250 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2, 4-dichloropyrimidin-5-ol (12 g, 64%) as pale yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.33 (s, 1H), 4.00 (s, 1H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine
To a stirred solution of 2, 4-dichloropyrimidin-5-ol (6 g, 36.50 mmol) in acetone (60 mL) under an argon atmosphere were added sodium iodide (600 mg, 3.65 mmol), potassium carbonate (13 g, 91.25 mmol) and p-methoxy benzyl chloride (8.6 g, 54.87 mmol) drop wise at room temperature. The reaction was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes (2% triethylamine) to afford 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (5 g, 48%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.63 (s, 1H), 7.41 (d, 2H), 6.99 (d, 2H), 5.29 (s, 2H), 3.75 (s, 3H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of (R)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol
To a stirred solution of (R)-3-methoxy-2-(methylamino) propan-1-ol (1.1 g, 92.20 mmol) in isopropyl alcohol (11 mL) under an argon atmosphere were added diisopropylethylamine (11 mL, 101.42 mmol) and 2,4-dichloro-5-((4-methoxybenzyl)oxy)pyrimidine (2.9 g, 101.42 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford (R)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (1.3 g, 38%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.72 (s, 1H), 7.31 (d, 2H), 6.90 (d, 2H), 4.94 (s, 2H), 4.85-4.79 (m, 1H), 3.81 (s, 3H), 3.80-3.79 (m, 2H), 3.60-3.50 (m, 2H), 3.30 (s, 3H), 3.11 (s, 3H), 2.41-2.39 (m, 1H); LCMS: 368.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.77 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.4).
Synthesis of (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol
To a stirred solution of (R)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (2.2 g, 5.99 mmol) in CH2Cl2 (34 mL) was added trifluoroacetic acid (6 mL) under an argon atmosphere at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The aqueous layer was basified with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (700 mg, 47%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.81 (s, 1H), 4.41-4.39 (m, 1H), 3.89-3.81 (m, 1H), 3.78-3.74 (m, 1H), 3.60-3.51 (m, 2H), 3.41 (s, 3H), 2.99 (s, 3H); LCMS: 247.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.88 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 70% EtOAc:hexane (Rf: 0.3).
Synthesis of (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (650 mg, 2.63 mmol) in THF (15 mL) under an argon atmosphere were added triphenylphosphine (1 g, 3.95 mmol) and diisopropylazodicarboxylate (800 mg, 3.95 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (450 mg, 75%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.64 (s, 1H), 4.38-4.34 (m, 1H), 3.91-3.89 (m, 1H), 3.60-3.55 (m, 1H), 3.54-3.51 (m, 1H), 3.50-3.42 (m, 1H), 3.39 (s, 3H), 3.20 (s, 3H); LCMS: 229.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.56 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.6).
Synthesis of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a stirred solution of (S)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (450 mg, 1.96 mmol) in CH2Cl2 (20 mL) was added borontribromide (1.47 g, 5.89 mmol) at 0° C. under an argon atmosphere. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., basified with a 2N sodium hydroxide solution, warmed to room temperature and stirred for 30 min. Then the reaction mixture was acidified with acetic acid (pH 3-4), aqueous layer was extracted with CH2Cl2 (3×40 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (300 mg, 71%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.63 (s, 1H), 4.45-4.40 (m, 1H), 3.94-3.90 (m, 1H), 3.89-3.83 (m, 1H), 3.80-3.73 (m, 1H), 3.57-3.51 (m, 1H), 3.23 (s, 3H); LCMS: 215.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.45 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Example 138
Synthesis of 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(5-chloro-2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 5-chloro-2-(trifluoromethyl) benzoic acid (4 g, 17.85 mmol) in CH2Cl2 (100 mL) under an argon atmosphere was added oxalyl chloride (2 mL, 19.64 mmol) and DMF (0.2 mL) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of acid (monitored by TLC), the volatile components were evaporated in vacuo. To a stirred solution of the residue in ether a CH2N2 in ether solution was added at 0° C. The reaction mixture was stirred at 0° C. for 2 h and aq. HBr (40 mL) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with water (800 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were washed with a sodium bicarbonate solution (50 mL), water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-bromo-1-(5-chloro-2-(trifluoromethyl) phenyl) ethan-1-one (5 g, 93%) as a pale yellow liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.79 (d, 1H), 7.59 (d, 1H), 7.49 (s, 1H), 4.33 (s, 2H); LCMS: 301 (M-2); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.86 min. 5 mM Aq NH4OAc: ACN; 0.8 mL/min); TLC: 20% EtOAc:hexanes (Rf: 0.7).
Synthesis of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2.7 g, 16.98 mmol) in CH3CN (110 mL) under an argon atmosphere was added cesium carbonate (16 g, 33.96 mmol) at 0° C. After stirring for 5 min, 2-bromo-1-(5-chloro-2-(trifluoromethyl) phenyl) ethan-1-one (6.4 g, 21.22 mmol) was added and stirred for 30 min. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with hexane (2×, 10 mL) to afford 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (5.5 g, 86%) as a pale yellow solid. LCMS: 380.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.29 min 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)ethan-1-ol)
To a stirred solution of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (5.5 g, 14.43 mmol) in MeOH (110 mL) under an argon atmosphere was added sodium borohydride (1.1 g, 28.86 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with cold water. The volatile components were evaporated in vacuo, saturated ammonium chloride solution (100 mL) was added and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl) oxy) ethan-1-ol) (5.5 g, crude) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.93 (s, 1H), 7.77 (d, 1H), 7.70-7.60 (m, 2H), 7.50-7.43 (m, 1H), 6.13 (d, 1H), 5.27-5.20 (m, 1H), 4.11-4.10 (m, 2H), 2.88 (d, 3H); LCMS: 383.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.23 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)ethan-1-ol) (5.3 g, 14.00 mmol) in CH2Cl2 (100 mL) under an argon atmosphere was added triethylamine (6.82 mL, 49.00 mmol) followed by methanesulfonyl chloride (2.2 mL, 28.00 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2.5 h. After consumption of the starting material (monitored by TLC), the reaction mixture was neutralized with a 5% sodium bicarbonate solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(5-chloro-2-(trifluoromethyl)phenyl)-2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)ethyl methanesulfonate (5 g, 78%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.99 (s, 1H), 7.83 (d, 1H), 7.75-7.71 (m, 2H), 7.43-7.40 (m, 1H), 6.10 (d, 1H), 4.62-4.58 (m, 1H), 4.23-4.20 (m, 1H), 3.30 (s, 3H), 2.87 (d, 3H); LCMS: 461.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.44 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 2.49 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(5-chloro-2-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (900 mg, 1.95 mmol) in DMF (30 mL) under an argon atmosphere was added potassium carbonate (808 mg, 5.85 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 36 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexanes to afford 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 42%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.90-7.84 (m, 2H), 7.80 (d, 1H), 7.30 (s, 1H), 5.01-4.99 (m, 1H), 4.33-4.30 (m, 1H), 4.21-4.18 (m, 1H), 2.95 (s, 3H); LCMS: 365.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.75 min 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC-BEH-C18 2.1×50 mm, 1.7 μm); RT 2.73 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 30% EtOAc:hexanes (Rf: 0.7).
Example 139
Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (600 mg, 3.77 mmol) in CH3CN (6 mL) under an argon atmosphere were added cesium carbonate (2.4 g, 7.54 mmol) and 1-(2, 4-bis (trifluoromethyl) phenyl)-2-bromoethan-1-one (1.4 g, 4.15 mmol) at room temperature. The reaction mixture was stirred at room temperature for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (500 mg, 33%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.30 (s, 2H), 8.27 (s, 1H), 7.71 (s, 1H), 7.46-7.42 (m, 1H), 5.59 (s, 2H), 2.85 (d, 3H); LCMS: 413.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.83 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Synthesis of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol
To a stirred solution of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (1.5 g, 3.63 mmol) in MeOH (15 mL) under an argon atmosphere was added sodium borohydride (201 mg, 5.44 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo, water (50 mL) was added and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 1-(2, 4-bis-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (1.1 g, 73%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 8.02 (d, 1H), 7.96 (s, 1H), 7.92 (d, 1H), 7.51 (s, 1H), 5.62-5.59 (m, 2H), 4.15-4.12 (m, 1H), 4.03 (t, 1H), 3.03 (d, 3H); LCMS: 415.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.74 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(2, 4-bis-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (1.2 g, 2.89 mmol) in CH2Cl2 (12 mL) were added triethylamine (0.5 mL, 3.46 mmol) followed by methanesulfonyl chloride (329 mg, 2.89 mmol) at 0° C. under an argon atmosphere. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was neutralized with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford 1-(2, 4-bis (trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (1 g, 71%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.02 (d, 1H), 8.00-7.98 (m, 1H), 7.91 (d, 1H), 7.40 (s, 1H), 6.10-6.08 (m, 1H), 4.22-4.10 (m, 2H), 3.68 (s, 1H), 3.07 (d, 3H), 3.00 (s, 3H); LCMS: 493.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.89 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.4).
Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(2, 4-bis-(trifluoromethyl) phenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (1 g, 2.02 mmol) in DMF (10 mL) under an argon atmosphere was added potassium carbonate (419 mg, 3.04 mmol) at room temperature. The reaction mixture was stirred at 110° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The reaction mixture was diluted with cold water (50 mL) and extracted with ether (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 25%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 8.00 (s, 1H), 7.81 (d, 1H), 7.80 (s, 1H), 7.34 (d, 1H), 5.10-5.08 (m, 1H), 4.31-4.29 (m, 1H), 4.20-4.16 (m, 1H), 3.08 (s, 3H); LCMS: 397.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.20 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Example 140
Synthesis of 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1.47 g, 9.24 mmol) in CH3CN (25 mL) under an argon atmosphere were added cesium carbonate (6 g, 18.49 mmol) and 2-bromo-1-(2-chloro-4, 5-difluorophenyl) ethan-1-one (2.5 g, 9.29 mmol) at room temperature. The reaction mixture was stirred at room temperature for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (2.5 g, 78%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.92-7.80 (m, 3H), 7.60 (s, 1H), 4.28 (d, 1H), 4.08 (d, 1H), 2.76 (s, 3H); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol
To a stirred solution of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (2.5 g, 7.18 mmol) in MeOH (25 mL) under an argon atmosphere was added sodium borohydride (531 mg, 14.36 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (2.2 g, crude) as an off-white solid used in the next step without further purification. LCMS: 350 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Synthesis of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate
To a stirred solution of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-ol (2.2 g, 6.28 mmol) in CH2Cl2 (25 mL) under an argon atmosphere were added triethylamine (1.26 g, 12.57 mmol) and methanesulfonyl chloride (859 mg, 7.54 mmol) at room temperature. The reaction mixture was stirred at room temperature for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (2.5 g, crude) as an off-white solid used in the next step without further purification. LCMS: 428 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 1-(2-chloro-4, 5-difluorophenyl)-2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy) ethyl methanesulfonate (2.5 g, 5.84 mmol) in DMF (25 mL) under an argon atmosphere was added potassium carbonate (1.61 g, 11.68 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 6 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (200 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.3 g, 68%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.90-7.87 (m, 1H), 7.79 (s, 1H), 7.18-7.10 (m, 1H), 5.19-5.17 (m, 1H), 4.30 (s, 2H), 3.01 (s, 3H); LCMS: 332.1 (M+2); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.79 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Example 141
Synthesis of 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1 g, 6.28 mmol) in CH3CN (10 mL) under an argon atmosphere were added 2-bromo-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one (2 g, 6.91 mmol) and cesium carbonate (4 g, 12.57 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was recrystallized from CH2Cl2: pentane (1:1, 2×10 mL) to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one (1.45 g, 63%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.24-8.22 (m, 1H), 7.95 (s, 1H), 7.89-7.86 (m, 1H), 7.80 (d, 1H), 7.68 (br s, 1H), 4.33-4.29 (m, 1H), 4.14-4.11 (m, 1H), 2.73 (s, 3H); LCMS: 379.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.76 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 40% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-(trifluoromethyl) phenyl) ethan-1-one (1.4 g, 3.68 mmol) in 1, 2-dichloroethane (10 mL) under an argon atmosphere was added sodium triacetoxyborohydride (1.6 g, 7.73 mmol) followed by trifluoroacetic acid (281 mL, 3.68 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (800 mg, 58%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.88-7.80 (m, 1H), 7.23 (s, 1H), 5.31-5.29 (m, 1H), 4.39-4.30 (m, 2H), 3.01 (s, 3H); LCMS: 365.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.84 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 25% EtOAc:hexanes (Rf: 0.5).
Example 142
Synthesis of (R)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol







Synthesis of methyl D-serinate hydrochloride
To a stirred solution of D-serine (10 g, 95.23 mmol) in MeOH (100 mL) under an argon atmosphere was added thionylchloride (56.65 g, 476.19 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was washed with ether (2×100 mL) and dried in vacuo to obtain the methyl D-serinate hydrochloride (10 g, 67.75%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.60-8.55 (m, 3H), 5.61-5.59 (m, 1H), 4.10-4.08 (m, 1H), 3.83-3.79 (m, 2H), 3.74 (s, 3H); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Synthesis of methyl (tert-butoxycarbonyl)-D-serinate
To a stirred solution of methyl D-serinate (10 g, 67.51 mmol) in THF (160 mL) under an argon atmosphere were added triethylamine (19.4 mL, 138.70 mmol) and Boc anhydride (15 mL, 64.51 mmol) in THF (76 mL) for 30 min at 0° C. The reaction mixture was warmed to room temperature and stirred for 14 h. Then the reaction mixture was again stirred at 50° C. for 3 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The residue was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with ether (3×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford methyl (tert-butoxycarbonyl)-D-serinate (8 g, 57%) as a colorless liquid. 1H-NMR (CDCl3, 500 MHz): δ 5.50-5.47 (m, 1H), 4.41-4.39 (m, 1H), 4.00-3.87 (m, 2H), 3.80 (s, 3H), 2.39-2.31 (m, 1H), 1.44 (s, 9H); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of methyl N-(tert-butoxycarbonyl)-O-methyl-D-serinate
To a stirred solution of methyl (tert-butoxycarbonyl)-L-serinate (6 g, 27.35 mmol) in CH3CN (240 mL) under an argon atmosphere were added silver oxide (32 g, 136.79 mmol) and methyl iodide (38 g, 273.50 mmol) at room temperature. The reaction mixture was stirred for 24 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered and washed with EtOAc (200 mL). The filtrate was concentrated in vacuo and the crude material was purified by column chromatography using 15% EtOAc:hexanes to afford methyl N-(tert-butoxycarbonyl)-O-methyl-D-serinate (3.3 g, 52%) as a colorless liquid. 1H-NMR (CDCl3, 500 MHz): δ 5.40-5.38 (m, 1H), 4.43-4.40 (m, 1H), 3.80-3.77 (m, 1H), 3.76 (s, 3H), 3.60-3.58 (m, 1H), 3.35 (s, 3H), 1.46 (s, 9H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of (S)-3-methoxy-2-(methylamino) propan-1-ol
To a stirred solution of methyl N-(tert-butoxycarbonyl)-O-methyl-D-serinate (3.3 g, 14.16 mmol) in THF (85 mL) under an argon atmosphere was added lithium aluminum hydride (1.6 g, 42.48 mmol) portion wise at 0° C. The reaction mixture was stirred at 70° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., quenched with water (4 mL), and 15% sodium hydroxide solution (4 mL) and water (3×4 mL) was added. After stirring for 30 min, the reaction mixture was filtered and washed with EtOAc (20 mL). The filtrate was dried over sodium sulfate, filtered and concentrated in vacuo to obtain (S)-3-methoxy-2-(methylamino) propan-1-ol (1.4 g, 87%) as a colorless liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 3.39-3.31 (m, 2H), 3.30-3.21 (m, 3H), 2.51-2.49 (m, 2H), 2.28 (s, 3H); TLC: 50% EtOAc:hexane (Rf: 0.2).
Synthesis of 2, 4-dichloropyrimidin-5-ol
To a stirred solution of 2, 4-dichloro-5-methoxypyrimidine (20 g, 111.73 mmol) in CH2Cl2 (280 mL) under an argon atmosphere was added borontribromide (54 mL, 558.65 mmol) drop wise at 0° C. The reaction mixture was refluxed for 24 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., quenched with a 1N sodium hydroxide solution and stirred for 1 h. Then the reaction mixture was acidified with acetic acid (pH′2-4) and the aqueous layer was extracted with 5% MeOH: CH2Cl2 (2×250 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2, 4-dichloropyrimidin-5-ol (12 g, 64%) as a pale yellow solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.33 (s, 1H), 4.00 (s, 1H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine
To a stirred solution of 2, 4-dichloropyrimidin-5-ol (6 g, 36.50 mmol) in acetone (60 mL) under an argon atmosphere were added sodium iodide (600 mg, 3.65 mmol), potassium carbonate (13 g, 91.25 mmol) and p-methoxy benzyl chloride (8.6 g, 54.87 mmol) drop wise at room temperature. The reaction mixture was stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was concentrated in vacuo. The crude material was purified by column chromatography (basic condition) using 10% EtOAc:hexanes to afford 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (5 g, 48%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.63 (s, 1H), 7.41 (d, 2H), 6.99 (d, 2H), 5.29 (s, 2H), 3.75 (s, 3H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol
To a stirred solution of (S)-3-methoxy-2-(methylamino) propan-1-ol (1.4 g, 11.73 mmol) in isopropyl alcohol (14 mL) under an argon atmosphere were added diisopropylethylamine (14 mL) and 2,4-dichloro-5-((4-methoxybenzyl)oxy)pyrimidine (3.6 g, 12.90 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (1.7 g, 39%) as a pale yellow oil. 1H-NMR (CDCl3, 400 MHz): δ 7.72 (s, 1H), 7.31 (d, 2H), 6.90 (d, 2H), 4.94 (s, 2H), 4.85-4.79 (m, 1H), 3.81 (s, 3H), 3.80-3.79 (m, 2H), 3.60-3.50 (m, 2H), 3.30 (s, 3H), 3.11 (s, 3H), 2.41-2.39 (m, 1H); LCMS: 368.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.77 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.4).
Synthesis of (S)-2-((2-chloro-5-((4-methoxybenzyl)oxy)pyrimidin-4-yl)(methyl)amino)-3-methoxypropan-1-ol
To a stirred solution of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (1.7 g, 4.63 mmol) in CH2Cl2 (26 mL) under an argon atmosphere was added trifluoroacetic acid (4.6 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The aqueous layer was basified with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (500 mg, 45%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 9.99 (br s, 1H), 7.59 (s, 1H), 5.00-4.99 (m, 1H), 4.80 (br s, 1H), 3.61-3.50 (m, 3H), 3.49-3.43 (m, 1H), 3.21 (s, 3H), 2.99 (s, 3H); TLC: 80% EtOAc:hexane (Rf: 0.3).
Synthesis of (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl)(methyl)amino)pyrimidin-5-ol
To a stirred solution of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-methoxypropan-1-ol (600 mg, 2.43 mmol) in THF (20 mL) under an argon atmosphere were added triphenylphosphine (954 mg, 3.64 mmol) and diisopropylazodicarboxylate (736 mg, 3.64 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (450 mg, 81%) as a colorless liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.63 (s, 1H), 4.39-4.35 (m, 1H), 3.91-3.88 (m, 1H), 3.60-3.50 (m, 2H), 3.49-3.42 (m, 1H), 3.39 (s, 3H), 3.21 (s, 3H); LCMS: 229.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.55 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.5).
Synthesis of (R)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a stirred solution of (R)-2-chloro-4-((1-hydroxy-3-methoxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (300 mg, 1.31 mmol) in CH2Cl2 (10 mL) was added borontribromide (0.37 mL, 3.93 mmol) at 0° C. under an argon atmosphere. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was cooled to 0° C., quenched with a 2N sodium hydroxide solution, warmed to room temperature and stirred for 30 min. Then the reaction mixture was acidified with acetic acid (pH′3-4) and extracted with CH2Cl2 (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (R)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (180 mg, 64%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.63 (s, 1H), 4.45-4.40 (m, 1H), 3.94-3.90 (m, 1H), 3.89-3.83 (m, 1H), 3.80-3.73 (m, 1H), 3.57-3.51 (m, 1H), 3.23 (s, 3H); LCMS: 215.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.65 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Example 143
Synthesis of 2-chloro-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 4, 5-difluoro-2-(trifluoromethyl) benzoic acid
To a stirred solution of 4, 5-difluoro-2-(trifluoromethyl) benzaldehyde (500 mg, 2.38 mmol) in CH3CN: water (1:1, 20 mL) under an argon atmosphere were added sodium dihydrogen phosphate (171 mg, 1.42 mmol), sodium chlorite (535 mg, 5.94 mmol) and 30% hydrogen peroxide (0.3 mL) at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was acidified with a 2 N HCl solution (20 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 4, 5-difluoro-2-(trifluoromethyl) benzoic acid (450 mg, 83%) as a white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 13.95 (br s, 1H), 8.02-8.00 (m, 1H), 7.99-7.97 (m, 1H); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.08 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% EtOAc:hexanes (Rf: 0.1).
Synthesis of 2-bromo-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one
To a stirred solution of 4, 5-difluoro-2-(trifluoromethyl) benzoic acid (500 mg, 1.99 mmol) in CH2Cl2 (50 mL) were added oxalyl chloride (0.2 mL, 1.99 mmol) and DMF (5 drops) at 0° C. under an argon atmosphere. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. To a stirred solution of the residue in ether (10 mL) was added a diazomethane solution in ether (5 mL) at 0° C. The reaction mixture was stirred for 2 h and aq. HBr (2.5 mL) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 3 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-bromo-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one (350 mg, 52%) as a pale yellow liquid. 1H-NMR (CD3OD, 500 MHz): δ 7.90-7.87 (m, 2H), 4.63 (s, 2H); LCMS: 303.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.80 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 11.03 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 10% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one)
To a stirred solution of 2-bromo-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one (450 mg, 2.83 mmol) in CH3CN (25 mL) were added cesium carbonate (950 mg, 3.12 mmol) and 2-bromo-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one (2 g, 6.22 mmol) at 0° C. under an argon atmosphere. The reaction mixture was stirred for 30 min at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with n-pentane (2×5 mL) to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one (800 mg, 75%) as an off-white solid used in the next step without further purification. TLC: 30% EtOAc:hexanes (Rf: 0.4).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one (800 mg, 2.10 mmol) in MeOH (20 mL) under an argon atmosphere was added sodium borohydride (160 mg, 4.20 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (20 mL), brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-ol (700 mg, 87%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 8.00-7.90 (m, 2H), 7.64 (s, 1H), 7.47-7.43 (m, 1H), 6.15-6.13 (m, 1H), 5.21-5.19 (m, 1H), 4.08-4.00 (m, 2H), 2.88 (d, 3H); LCMS: 384.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.44 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.30 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 30% EtOAc:hexanes (Rf: 0.2).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-ol (700 mg, 1.82 mmol) in CH2Cl2 (20 mL) was added triethylamine (370 mg, 3.66 mmol) at 0° C. under an argon atmosphere. The reaction mixture was stirred for 10 min, then methanesulfonyl chloride (250 mg, 2.19 mmol) was added. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate (700 mg, 83%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 8.10-8.01 (m, 1H), 7.70 (s, 1H), 7.40-7.33 (m, 1H), 6.09-6.06 (m, 1H), 4.59-4.51 (m, 1H), 4.26-4.21 (m, 1H), 3.33 (s, 1H), 3.27 (s, 3H), 2.85 (d, 3H); LCMS: 462.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.65 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.46 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethyl methanesulfonate (700 mg, 1.52 mmol) in DMF (20 mL) under an argon atmosphere was added potassium carbonate (419 mg, 3.03 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (20 mL), brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5-15% EtOAc:hexane to afford 2-chloro-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (450 mg, 82%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.10-8.01 (m, 1H), 7.82 (s, 1H), 7.41-7.39 (m, 1H), 5.08-5.05 (m, 1H), 4.30 (d, 1H), 4.15 (d, 1H), 2.91 (s, 3H); LCMS: 366.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.52 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.67 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 20% EtOAc:hexanes (Rf: 0.5).
Example 144
Synthesis of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (5 mL) under an argon atmosphere was added cesium carbonate (2.2 g, 6.91 mmol) at 0° C. After stirring for 10 min, 2-bromo-1-(2, 4, 5-trifluorophenyl) ethan-1-one (800 mg, 3.45 mmol) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 30 min. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with EtOAc:hexane (1:1, 2×20 mL) to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-one (550 mg, 55%) as a pale yellow solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.88 (s, 1H), 7.70-7.63 (m, 2H), 7.53 (s, 1H), 4.17-4.10 (m, 2H), 2.81 (s, 3H); LCMS: 332.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.07 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-one (200 mg, 0.60 mmol) in MeOH (1 mL) under an argon atmosphere was added sodium borohydride (35 mg, 0.90 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with an ammonium chloride solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-ol (140 mg, crude) as a pale yellow solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 7.69 (s, 1H), 7.68-7.53 (m, 2H), 7.41-7.39 (m, 1H), 6.00 (s, 1H), 5.20-5.18 (m, 1H), 4.20-4.17 (m, 1H), 3.99 (t, 1H), 2.83 (d, 3H); LCMS: 334.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.86 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.2).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethan-1-ol (140 mg, 0.42 mmol) in CH2Cl2 (2 mL) under an argon atmosphere were added triethylamine (0.12 mL, 0.84 mmol) followed by methanesulfonyl chloride (0.05 mL, 0.63 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethyl methanesulfonate (200 mg, crude) as a pale yellow solid used in the next step without further purification. 1H-NMR (CDCl3, 500 MHz): δ 7.43 (s, 1H), 7.35-7.30 (m, 1H), 7.09-7.04 (m, 1H), 6.20-6.18 (m, 1H), 6.13 (br s, 1H), 4.25-4.20 (m, 2H), 3.13 (s, 3H), 3.06-3.03 (m, 3H); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4, 5-trifluorophenyl) ethyl methanesulfonate (200 mg, 0.48 mmol) in DMF (1 mL) under an argon atmosphere was added potassium carbonate (100 mg, 0.72 mmol) at room temperature. The reaction mixture was heated at 75° C. for 12 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 52%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.73 (s, 1H), 7.06-7.00 (m, 1H), 6.88-6.81 (m, 1H), 4.90 (s, 1H), 4.30-4.20 (m, 2H), 3.17 (s, 3H); LCMS: 316.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.34 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.7).
Example 145
Synthesis of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-difluorophenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (10 mL) under an argon atmosphere were added cesium carbonate (2 g, 6.28 mmol). After stirring for 5 min, 2-bromo-1-(2, 4-difluorophenyl) ethan-1-one (812 mg, 3.46 mmol) was added at 0° C. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15-20% EtOAc:hexanes to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-difluorophenyl) ethan-1-one (620 mg, 63%) an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.85 (s, 1H), 7.70-7.67 (m, 1H), 7.39 (s, 1H), 7.30 (t, 1H), 7.19 (t, 1H), 4.15 (d AB q, 1H), 4.08 (d AB q, 1H), 2.80 (s, 3H); LCMS: 313.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.43 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 4-difluorophenyl) ethan-1-one (600 mg, 1.91 mmol) in 1, 2-dichloroethane (12 mL) under an argon atmosphere were added sodium triacetoxyborohydride (812 mg, 3.83 mmol) and trifluoroacetic acid (147 mL, 1.91 mmol) at room temperature. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a 1N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10-15% EtOAc:hexanes to afford 2-chloro-7-(2,4-difluorophenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (500 mg, 87%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 6.99-6.81 (m, 3H), 4.92-4.90 (m, 1H), 4.24-4.20 (m, 2H), 3.10 (s, 3H); LCMS: 298.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.20 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Example 146
Synthesis of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of ethyl 2-((tert-butoxycarbonyl) amino)-3, 3, 3-trifluoro-2-hydroxypropanoate
To a stirred solution of ethyl 3, 3, 3-trifluoro-2-oxopropanoate (25 g, 147.05 mmol) in CH2Cl2 (250 mL) under an argon atmosphere was added Boc-amine (19 g, 161.76 mmol) at room temperature. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo to obtain ethyl 2-((tert-butoxycarbonyl) amino)-3, 3, 3-trifluoro-2-hydroxypropanoate (40 g, 95%) as pale yellow oil used in the next step without further purification. TLC: 20% EtOAc:hexane (Rf: 0.5).
Synthesis of ethyl 2-((tert-butoxycarbonyl)imino)-3,3,3-trifluoropropanoate
To a stirred solution of ethyl 2-((tert-butoxycarbonyl) amino)-3, 3, 3-trifluoro-2-hydroxypropanoate (20 g, 69.56 mmol) in ether (300 mL) under an argon atmosphere were added trifluoroacetic anhydride (14.6 g, 69.56 mmol) and pyridine (11.2 mL, 139.12 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered. The filtrate was washed with water (100 mL), dried over sodium sulfate, filtered and concentrated in vacuo to obtain ethyl 2-((tert-butoxycarbonyl)imino)-3,3,3-trifluoropropanoate (11 g, 59%) as an off-white solid used without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 4.26-4.11 (m, 2H), 1.38 (s, 9H), 1.19 (t, 3H); TLC: 20% EtOAc:hexane (Rf: 0.5).
Synthesis of tert-butyl (1,1,1-trifluoro-3-hydroxypropan-2-yl)carbamate
To a stirred solution of ethyl 2-((tert-butoxycarbonyl)imino)-3,3,3-trifluoropropanoate (11 g, 40.81 mmol) in THF (2.75 mL) under an argon atmosphere was added lithium aluminum hydride (4.65 g, 122.44 mmol) portion wise at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (5 mL) and basified with a 15% sodium hydroxide solution (5 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. The reaction mixture was filtered and washed with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain tert-butyl (1,1,1-trifluoro-3-hydroxypropan-2-yl)carbamate (6 g, 64%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 6.11 (br s, 1H), 5.04 (br s, 1H), 4.21-4.07 (m, 1H), 3.69-3.45 (m, 2H), 1.37 (d, 9H); TLC: 30% EtOAc:hexane (Rf: 0.3).
Synthesis of tert-butyl (3-((2,4-dichloropyrimidin-5-yl)oxy)-1,1,1-trifluoropropan-2-yl)carbamate
To a stirred solution of tert-butyl (1,1,1-trifluoro-3-hydroxypropan-2-yl)carbamate (65 g, 26.20 mmol) in THF (180 mL) under an argon atmosphere were added diisopropylazodicarboxylate (7.9 g, 39.30 mmol), triphenylphosphine (10 g, 39.30 mmol) and 2, 4-dichloropyrimidin-5-ol (4.3 g, 26.20 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 4 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexane to afford tert-butyl (3-((2,4-dichloropyrimidin-5-yl)oxy)-1,1,1-trifluoropropan-2-yl)carbamate (3.5 g, 36%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.21 (s, 1H), 5.21-5.18 (m, 1H), 4.74 (br s, 1H), 4.43-4.18 (m, 2H), 1.48 (s, 9H); TLC: 50% EtOAc:hexane (Rf: 0.5).
Synthesis of 3-((2, 4-dichloropyrimidin-5-yl) oxy)-1, 1, 1-trifluoropropan-2-amine hydrochloride
To a stirred solution of tert-butyl (3-((2,4-dichloropyrimidin-5-yl)oxy)-1,1,1-trifluoropropan-2-yl)carbamate (3.5 g, 9.30 mmol) in CH2Cl2 (30 mL) under an argon atmosphere was added 4N HCl in 1, 4-dioxane (10 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was washed with n-pentane (2×10 mL) to obtain 3-((2,4-dichloropyrimidin-5-yl)oxy)-1,1,1-trifluoropropan-2-amine hydrochloride (2.2 g) as an off-white solid. LCMS: 316.8 (M+CH3CN); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.82 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-chloro-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 3-((2,4-dichloropyrimidin-5-yl)oxy)-1,1,1-trifluoropropan-2-amine hydrochloride (2.2 g, 7.97 mmol) in 1, 4-dioxane (5.5 mL) under an argon atmosphere was added diisopropylethylamine (5.5 mL, 31.88 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-chloro-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.6 g, 84%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.90 (s, 1H), 7.43 (br s, 1H), 5.01-4.97 (m, 1H), 4.4.61-4.58 (m, 1H), 4.17-4.09 (m, 1H); LCMS: 239.8 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.82 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.4).
Synthesis of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-chloro-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.6 g, 6.69 mmol) in DMF (20 mL) under an argon atmosphere was added sodium hydride (193 mg, 8.03 mmol) at 0° C. The reaction mixture was stirred for 5 min at 0° C., then methyliodide (1.14 g, 8.03 mmol) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 5 min at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.2 g, 71%) as a pale yellow oil. 1H-NMR (400 MHz, CDCl3): δ 7.82 (s, 1H), 4.62 (d, 1H), 4.03-4.00 (m, 1H), 3.99-3.95 (m, 1H), 3.31 (s, 3H); LCMS: 253.8 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.18 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.3).
Example 147
Synthesis of (S)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a stirred solution of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (150 mg, 0.69 mmol) in DMF (1 mL) under an argon atmosphere was added sodium hydride (35 mg, 1.04 mmol) at 0° C. The reaction mixture was stirred for 5 min, then 1-fluoro-4-nitrobenzene (118 mg, 0.83 mmol) was added to the reaction mixture at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction was quenched with ice cold water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford (S)-2-chloro-8-methyl-7-((4-nitrophenoxy) methyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 47%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.25 (d, 2H), 7.73 (s, 1H), 7.00 (d, 2H), 4.52 (d, 1H), 4.21 (d, 2H), 4.10-4.05 (m, 1H), 3.99-3.93 (m, 1H), 3.35 (s, 3H); LCMS: 336.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.54 min 0.05% Aq TFA: ACN; 0.80 mL/min).
Synthesis of (S)-4-((2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methoxy) aniline
To a stirred solution of (S)-2-chloro-8-methyl-7-((4-nitrophenoxy) methyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.52 mmol) in THF (2.5 mL) under an argon atmosphere were added ammonium chloride (56 mg, 1.04 mmol) in water:MeOH (1:1, 2 mL) and zinc powder (69 mg, 1.04 mmol) at room temperature. The reaction mixture was stirred for 6 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction was filtered and the filtrate was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (S)-4-((2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methoxy) aniline (130 mg, 89%) as a pale yellow solid. 1H-NMR (CDCl3, 400 MHz): δ 7.69 (s, 1H), 6.71 (d, 2H), 6.63 (d, 2H), 4.50 (d, 1H), 4.05-3.95 (m, 3H), 3.83-3.77 (m, 1H), 3.29 (s, 3H); LCMS: 306.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.03 min 0.05% Aq TFA: ACN; 0.80 mL/min).
Synthesis of (S)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (S)-4-((2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methoxy) aniline (130 mg, 0.42 mmol) in DMF (3 mL) under an argon atmosphere was added tert-butyl nitrite (87 mg, 0.84 mmol) drop wise at 0° C. The reaction mixture was stirred at 90° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction was acidified with acetic acid solution and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford (S)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (110 mg, 89%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 7.31-7.25 (m, 2H), 7.00 (t, 1H), 6.89 (d, 2H), 4.50 (d, 1H), 4.10-4.02 (m, 2H), 4.00 (d, 1H), 3.89-3.83 (m, 1H), 3.30 (s, 3H); LCMS: 291.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.45 min 0.05% Aq TFA: ACN; 0.80 mL/min).
Example 148
Synthesis of (R)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of (R)-2-chloro-8-methyl-7-((4-nitrophenoxy) methyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (R)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (300 mg, 1.39 mmol) in DMF (5 mL) under an argon atmosphere was added sodium hydride (100 mg, 2.04 mmol) at 0° C. After stirring the reaction mixture for 5 min, 1-fluoro-4-nitrobenzene (230 mg, 1.67 mmol) was added at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with ice cold water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (R)-2-chloro-8-methyl-7-((4-nitrophenoxy) methyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 42%) as a brown solid. LC-MS: 336.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.53 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.6).
Synthesis of (R)-4-((2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methoxy) aniline
To a stirred solution of (R)-2-chloro-8-methyl-7-((4-nitrophenoxy) methyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.59 mmol) in THF (10 mL) under an argon atmosphere were added ammonium chloride (64 mg, 1.19 mmol) in MeOH: H2O (1:1, 20 mL) and zinc powder (78 mg, 1.19 mmol) portion wise at room temperature. The reaction mixture was stirred for 6 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction was filtered and the filtrate was concentrated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extract was dried over sodium sulfate, filtered and concentrated in vacuo to obtain (R)-4-((2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methoxy) aniline (160 mg, 88%) as a white solid. LC-MS: 306.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.05 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of (R)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (R)-4-((2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methoxy) aniline (160 mg, 0.52 mmol) in DMF (4 mL) under an argon atmosphere was added tert-butyl nitrite (107 mg, 1.04 mmol) at 0° C. The reaction mixture was stirred at 90° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was acidified with acetic acid (2 mL) and concentrated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexanes to afford (R)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 66%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 7.30-7.25 (m, 2H), 7.00 (t, 1H), 6.90 (d, 2H), 4.50 (d, 1H), 4.11-4.01 (m, 3H), 3.90-3.80 (m, 1H), 3.30 (s, 3H); LC-MS: 291.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.57 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.7).
Example 149
Synthesis of 2-chloro-7-(5-methoxy-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-methoxy-2-methylphenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2 g, 12.57 mmol) in CH3CN (20 mL) under an argon atmosphere were added cesium carbonate (8.1 g, 25.14 mmol) and 2-bromo-1-(5-methoxy-2-methylphenyl) ethan-1-one (3.3 g, 13.83 mmol) at room temperature. The reaction mixture was stirred for 3 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-methoxy-2-methylphenyl) ethan-1-one (2 g, 50%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.81 (s, 1H), 7.43 (s, 1H), 7.10 (d, 1H), 6.84 (d, 1H), 4.15-4.13 (m, 1H), 4.08-4.05 (m, 1H), 3.81 (s, 1H), 3.26 (s, 3H), 2.92 (s, 3H), 2.20 (s, 3H); LCMS: 321.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.31 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(5-methoxy-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(5-methoxy-2-methylphenyl) ethan-1-one (2 g, 6.23 mmol) in dichloroethane (20 mL) under an argon atmosphere were added trifluoroacetic acid (0.49 mL, 6.23 mmol) and sodium triacetoxyborohydride (2.8 g, 13.08 mmol) at room temperature. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexane to afford 2-chloro-7-(5-methoxy-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (750 mg, 39%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 7.14 (d, 1H), 6.79 (d, 1H), 6.50 (s, 1H), 4.80 (t, 1H), 4.21 (d, 1H), 4.10 (d, 1H), 3.71 (s, 3H), 3.05 (s, 3H), 2.30 (s, 3H); LCMS: 306.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.26 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Example 150
Synthesis of 2-chloro-7-(2-chloro-5-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-methoxyphenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2 g, 12.57 mmol) in CH3CN (20 mL) under an argon atmosphere were added cesium carbonate (8 g, 25.09 mmol) and 2-bromo-1-(2-chloro-5-methoxyphenyl) ethan-1-one (3.6 g, 13.83 mmol) at room temperature. The reaction mixture was stirred for 3 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-methoxyphenyl) ethan-1-one (2.2 g, 51%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.89 (s, 1H), 7.47-7.40 (m, 2H), 7.37 (s, 1H), 7.03 (d, 1H), 4.29-4.27 (m, 1H), 4.07-4.03 (m, 1H), 3.80 (s, 3H), 2.73 (s, 3H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-5-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-5-methoxyphenyl) ethan-1-one (2.2 g, 6.43 mmol) in dichloroethane (20 mL) under an argon atmosphere were added trifluoroacetic acid (0.49 mL, 6.43 mmol) and sodium triacetoxyborohydride (2.86 g, 13.50 mmol) at room temperature. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexane to afford 2-chloro-7-(2-chloro-5-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1 g, 47%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 7.33 (d, 1H), 6.80 (d, 1H), 6.50 (s, 1H), 5.01-5.00 (m, 1H), 4.34-4.30 (m, 1H), 4.22-4.20 (m, 1H), 3.70 (s, 3H), 3.11 (s, 3H); LCMS: 326.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.40 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Example 151
Synthesis of 2-chloro-7-(2-chloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-4-methoxyphenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (5 mL) under an argon atmosphere were added cesium carbonate (2.0 g, 6.28 mmol) and 2-bromo-1-(2-chloro-4-methoxyphenyl) ethan-1-one (1.2 g, 3.45 mmol) at room temperature. The reaction mixture was stirred for 3 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-4-methoxyphenyl) ethan-1-one (600 mg, 56%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.91 (d, 1H), 7.79 (s, 1H), 6.99 (s, 1H), 6.93 (d, 1H), 4.48-4.46 (m, 1H), 4.01-3.99 (m, 1H), 3.83 (s, 3H), 2.92 (s, 3H); LCMS: 341.9 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.58 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Synthesis of 2-chloro-7-(2-chloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2-chloro-4-methoxyphenyl) ethan-1-one (600 mg, 1.75 mmol) in dichloroethane (6 mL) under an argon atmosphere were added trifluoroacetic acid (200 mg, 5.44 mmol) and sodium triacetoxyborohydride (781 mg, 3.68 mmol) at room temperature. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexane to afford 2-chloro-7-(2-chloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (350 mg, 61%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 7.63 (s, 1H), 7.08 (s, 1H), 6.95-6.89 (m, 2H), 5.20-5.18 (m, 1H), 4.34-4.29 (m, 2H), 3.80 (s, 3H), 3.10 (s, 3H); LCMS: 327.7 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.84 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.4).
Example 152
Synthesis of 2-chloro-7-(3, 3-difluorocyclobutyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(3, 3-difluorocyclobutyl) ethan-1-one
To a stirred solution of 3, 3-difluorocyclobutane-1-carboxylic acid (4 g, 29.19 mmol) in CH2Cl2 (60 mL) were added oxalyl chloride (3.7 g, 1.99 mmol) and DMF (0.5 drops) at 0° C. under an argon atmosphere. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. To a stirred solution of the residue in ether (5 mL) was added a diazomethane solution (12 mL) at 0° C. The reaction mixture was stirred for 2 h. Then aq. HBr (20 mL) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 16 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-bromo-1-(4, 5-difluoro-2-(trifluoromethyl) phenyl) ethan-1-one (350 mg, 52%) as a pale yellow liquid. 1H-NMR (CDCl3, 400 MHz): 3.90 (s, 2H), 3.46-3.39 (m, 1H), 2.90-2.70 (m, 4H); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2.3 g, 14.46 mmol) in CH3CN (40 mL) under an argon atmosphere was added cesium carbonate (10.4 g, 31.81 mmol) and stirred for 5 min. Then 2-bromo-1-(3, 3-difluorocyclobutyl) ethan-1-one (3.4 g, 15.90 mmol) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethan-1-one (2.6 g, 62%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 3.92 (s, 2H), 3.45 (br s, 1H), 3.12-3.11 (m, 1H), 3.10 (s, 3H), 2.70-2.56 (m, 3H), 2.50-2.40 (m, 1H); LCMS: 291.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.16 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethan-1-one (2.6 g, 8.93 mmol) in MeOH (40 mL) under an argon atmosphere was added sodium borohydride (680 mg, 17.86 mmol) at 0° C. The reaction mixture was stirred for 2 h at room temperature. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethan-1-ol (2.3 g, 88%) as an off-white solid used in the next step without further purification. LCMS: 293.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.68 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethan-1-ol (2.3 g, 7.84 mmol) in CH2Cl2 (30 mL) under an argon atmosphere was added triethylamine (1.6 g, 15.68 mmol) at 0° C. The reaction mixture was stirred at room temperature for 10 min, then methanesulfonyl chloride (1.3 g, 11.80 mmol) was added drop wise at 0° C. The reaction mixture was stirred for 2 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with CH2Cl2 (2×80 mL). The combined organic extracts were washed with water (50 mL), brine (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethyl methanesulfonate (2.6 g, 89%) as an off-white solid. LCMS: 371.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.20 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(3, 3-difluorocyclobutyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(3, 3-difluorocyclobutyl) ethyl methanesulfonate (2.6 g, 7.00 mmol) in DMF (30 mL) under an argon atmosphere was added potassium carbonate (1.9 g, 14.00 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with ice cold water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford 2-chloro-7-(3, 3-difluorocyclobutyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.5 g, 78%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.69 (s, 1H), 4.12 (d, 1H), 3.91 (d, 1H), 3.43 (d, 1H), 3.21 (s, 3H), 2.80-2.70 (m, 2H), 2.60-2.30 (m, 3H); LCMS: 275.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.25 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Example 153
Synthesis of 2-chloro-7-(4-methoxy-2-methylphenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)-1-(4-methoxy-2-methylphenyl)ethanone
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (1 g, 6.28 mmol) in CH3CN (20 mL) under an argon atmosphere was added cesium carbonate (1.68 g, 6.92 mmol) at 0° C. After stirring for 5 min, 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one (1.7 g, 6.92 mmol) was added to the reaction mixture and stirred for 4 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15-20% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)-1-(4-methoxy-2-methylphenyl)ethanone (1.3 g, 65%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.92 (d, 1H), 7.58 (s, 1H), 7.49-7.43 (m, 1H), 6.90 (s, 1H), 6.89-6.87 (m, 1H), 5.50 (s, 2H), 3.83 (s, 3H), 2.86 (d, 3H), 2.45 (s, 3H); LCMS: 322.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.92 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-methoxy-2-methylphenyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino)pyrimidin-5-yl)oxy)-1-(4-methoxy-2-methylphenyl)ethanone (1.1 g, 3.40 mmol) in MeOH (20 mL) under an argon atmosphere was added sodium borohydride (194 mg, 5.14 mmol) at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were evaporated, water (50 mL) was added and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-methoxy-2-methylphenyl) ethan-1-ol (800 mg, 73%) as an off-white solid. TLC: 40% EtOAc:hexanes (Rf: 0.2).
Synthesis of 2-chloro-7-(4-methoxy-2-methylphenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4-methoxy-2-methylphenyl) ethan-1-ol (50 mg, 0.15 mmol) in CH2Cl2 (3 mL) under an argon atmosphere were added triethylamine (0.04 mL, 0.31 mmol) and trifluoromethanesulfonic anhydride (55 mg, 0.19 mmol) at 0° C. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexane to afford 2-chloro-7-(4-methoxy-2-methylphenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (14 mg, 30%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 6.90 (d, 1H), 6.79-6.73 (m, 2H), 4.80 (t, 1H), 4.20 (d, 1H), 4.09 (d, 1H), 3.80 (s, 3H), 3.01 (s, 3H), 2.35 (s, 3H); LCMS: 306.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.78 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Example 154
Synthesis of 2-chloro-7-(4, 4-difluorocyclohexyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(4,4-difluorocyclohexyl)ethan-1-one
To a stirred solution of 4, 4-difluorocyclohexane-1-carboxylic acid (4 g, 24.39 mmol) in CH2Cl2 (60 mL) under an argon atmosphere were added oxalyl chloride (3.1 g, 24.39 mmol) and DMF (0.5 mL) at 0° C. The reaction mixture was stirred for 2 h at room temperature. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. To a stirred solution of the residue in ether (5 mL) was added a diazomethane solution (12 mL) at 0° C. The reaction mixture was stirred for 2 h. Then aq. HBr (20 mL) was added to the reaction mixture at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with water (800 mL) and extracted with EtOAc (2×500 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-bromo-1-(4, 4-difluorocyclohexyl) ethan-1-one (4 g, 68%) as a colorless liquid used in the next step without further purification. 1H-NMR (CDCl3, 400 MHz): δ 3.92 (s, 2H), 2.87-2.80 (m, 1H), 2.20-2.10 (m, 2H), 2.00-1.90 (m, 2H), 1.86-1.73 (m, 4H); TLC: 30% EtOAc:hexanes (Rf: 0.7).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (2.4 g, 15.09 mmol) in CH3CN (50 mL) under an argon atmosphere was added cesium carbonate (10.8 g, 33.20 mmol) and stirred for 5 min. Then 2-bromo-1-(4, 4-difluorocyclohexyl) ethan-1-one (4 g, 16.60 mmol) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethan-1-one (2.6 g, 55%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.69 (s, 1H), 4.20 (d, 1H), 3.90 (d, 1H), 3.13 (s, 3H), 2.20-2.00 (m, 5H), 1.80-1.40 (m, 4H); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethan-1-ol
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethan-1-one (2.6 g, 8.15 mmol) in MeOH (30 mL) under an argon atmosphere was added sodium borohydride (620 mg, 16.30 mmol) at 0° C. The reaction mixture was stirred at room temperature for 2 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethan-1-ol (2.4 g, 92%) as an off-white solid used in the next step without further purification. LCMS: 321.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.95 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethyl methanesulfonate
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethan-1-ol (2.4 g, 7.47 mmol) in CH2Cl2 (30 mL) was added triethylamine (1.52 g, 14.94 mmol) at 0° C. under an argon atmosphere. The reaction mixture was stirred at room temperature for 10 min. Then methanesulfonyl chloride (1.28 g, 11.14 mmol) was added drop wise at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with CH2Cl2 (2×80 mL). The combined organic extracts were washed with water (50 mL), brine (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethyl methanesulfonate (2.6 g, 89%) as an off-white solid. LCMS: 400 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.41 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(4, 4-difluorocyclohexyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(4, 4-difluorocyclohexyl) ethyl methanesulfonate (2.6 g, 6.51 mmol) in DMF (30 mL) under an argon atmosphere was added potassium carbonate (1.8 g, 13.03 mmol) at room temperature. The reaction mixture was stirred at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with ice cold water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with water (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford 2-chloro-7-(4, 4-difluorocyclohexyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (1.8 g, 91%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.67 (s, 1H), 4.38 (d, 1H), 3.89 (d, 1H), 3.30-3.28 (m, 1H), 3.27 (s, 3H), 1.90-1.70 (m, 4H), 1.65 (s, 1H), 1.60-1.50 (m, 4H); LCMS: 303.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.44 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.6).
Example 155
Synthesis of (S)-2-chloro-7-cyclopropyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of methyl (S)-2-amino-2-cyclopropylacetate
To a stirred solution of (S)-2-amino-2-cyclopropylacetic acid (4 g, 34.78 mmol) in MeOH (40 mL) under an argon atmosphere was added thionylchloride (12.5 mL, 173.91 mmol) at 0° C. The reaction mixture was refluxed for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo to obtain methyl (S)-2-amino-2-cyclopropylacetate (4.2 g, crude) as a pale yellow solid used without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 8.62 (br s, 2H), 3.79-3.72 (m, 4H), 1.13-1.05 (m, 1H), 0.67-0.50 (m, 4H); TLC: 10% MeOH/CH2Cl2 (Rf: 0.7).
Synthesis of methyl (S)-2-((tert-butoxycarbonyl) amino)-2-cyclopropylacetate
To a stirred solution of methyl (S)-2-amino-2-cyclopropylacetate (4.2 g, 32.50 mmol) in CH2Cl2 (100 mL) under an argon atmosphere were added triethylamine (22.6 mL, 162.50 mmol) and Boc anhydride (8.5 g, 39.06 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain methyl (S)-2-((tert-butoxycarbonyl) amino)-2-cyclopropylacetate (7 g, 94%) as a brown oil used without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 7.37 (d, 1H), 3.63 (s, 3H), 3.38-3.34 (m, 1H), 1.38 (s, 9H), 1.07-1.00 (m, 1H), 0.50-0.25 (m, 4H); TLC: 30% EtOAc:hexane (Rf: 0.7).
Synthesis of (S)-2-cyclopropyl-2-(methylamino) ethan-1-ol
To a stirred solution of methyl (S)-2-((tert-butoxycarbonyl) amino)-2-cyclopropylacetate (7 g, 30.70 mmol) in THF (200 mL) under an argon atmosphere was added lithiumaluminiumhydride (5.8 g, 153.50 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium sulfate solution (50 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. The volatile components were evaporated in vacuo. The residue was dissolved in methanol (50 mL), stirred at room temperature for 30 min and filtered. The filtrate was concentrated in vacuo to obtain (S)-2-cyclopropyl-2-(methylamino) ethan-1-ol (3 g, crude) as an off-white solid used without further purification. 1H-NMR (CDCl3, 400 MHz): δ 3.70-3.68 (m, 1H), 3.46 (s, 3H), 3.45-3.43 (m, 1H), 1.72-1.68 (m, 1H), 0.78-0.70 (m, 1H), 0.60-0.51 (m, 1H), 0.48-0.42 (m, 1H), 0.27-0.21 (m, 1H), 0.15-0.10 (m, 1H); TLC: 10% MeOH/CH2Cl2 (Rf. 0.1).
Synthesis of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-cyclopropylethan-1-ol
To a stirred solution of (S)-2-cyclopropyl-2-(methylamino) ethan-1-ol (500 mg, 1.76 mmol) in tert-butanol (10 mL) under an argon atmosphere was added diisopropylethylamine (1.4 mL, 8.80 mmol) and 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (242 mg, 2.11 mmol) at room temperature. The reaction mixture was stirred at 100° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 40-50% EtOAc:hexane to afford (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-cyclopropylethan-1-ol (250 mg, 39%) as a colorless thick oil. 1H-NMR (DMSO-d6, 400 MHz): δ 7.85 (s, 1H), 7.37 (d, 2H), 6.96 (d, 2H), 4.99 (s, 2H), 4.67 (t, 1H), 4.10-4.07 (m, 1H), 3.75 (s, 3H), 3.65-3.53 (m, 1H), 3.50-3.44 (m, 1H), 3.03 (s, 3H), 1.00-0.90 (m, 1H), 0.47-0.40 (m, 1H), 0.35-0.28 (m, 1H), 0.17-0.10 (m, 1H), 0.05-0.01 (m, 1H); TLC: 50% EtOAc:hexane (Rf: 0.5).
Synthesis of (S)-2-chloro-4-((1-cyclopropyl-2-hydroxyethyl) (methyl) amino) pyrimidin-5-ol
To a stirred solution (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-cyclopropylethan-1-ol (50 mg, 0.13 mmol) in CH2Cl2 (2 mL) under an argon atmosphere was added trifluoroacetic acid (0.05 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexane to afford (S)-2-chloro-4-((1-cyclopropyl-2-hydroxyethyl) (methyl) amino) pyrimidin-5-ol (20 mg, 60%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.88 (s, 1H), 7.50 (s, 1H), 4.78-4.70 (m, 1H), 4.15-4.10 (m, 1H), 3.70-3.60 (m, 1H), 3.59-3.50 (m, 1H), 3.01 (s, 3H), 1.04-1.00 (m, 1H), 0.60-0.53 (m, 1H), 0.41-0.37 (m, 1H), 0.31-0.25 (m, 2H); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of (S)-2-chloro-7-cyclopropyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-((1-cyclopropyl-2-hydroxyethyl) (methyl) amino) pyrimidin-5-ol (100 mg, 0.41 mmol) in THF (2 mL) under an argon atmosphere were added triphenylphosphine (161 mg, 0.61) and diisopropylazodicarboxylate (124 mg, 0.61 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexane to afford (S)-2-chloro-7-cyclopropyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 87%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.67 (s, 1H), 4.22-4.19 (m, 1H), 4.07-4.04 (m, 1H), 3.12 (s, 3H), 2.93-2.90 (m, 1H), 0.93-0.87 (m, 1H), 0.70-0.58 (m, 2H), 0.50-0.43 (m, 1H), 0.28-0.22 (m, 1H); TLC: 50% EtOAc:hexane (Rf: 0.6).
Example 156
Synthesis of (S)-2-chloro-7-(cyclopropylmethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of methyl (S)-2-amino-3-cyclopropylpropanoate
To a stirred solution of (S)-2-amino-3-cyclopropylpropanoic acid (2 g, 15.50 mmol) in MeOH (20 mL) under an argon atmosphere was added thionyl chloride (3.3 mL, 46.51 mmol) at 0° C. The reaction mixture was refluxed for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo to obtain methyl (S)-2-amino-3-cyclopropylpropanoate (2.2 g, crude) as a pale yellow solid used in the next step without further purification. LCMS: 144.7 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5 μm); RT 1.62 min. 0.05% Aq TFA; ACN 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Synthesis of methyl (S)-2-((tert-butoxycarbonyl) amino)-3-cyclopropylpropanoate
To a stirred solution of methyl (S)-2-amino-3-cyclopropylpropanoate (2.2 g, 15.38 mmol) in CH2Cl2 (20 mL) under an argon atmosphere were added triethylamine (10.7 mL, 76.92 mmol) and Boc anhydride (4.1 mL, 18.46 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexanes to afford methyl (S)-2-((tert-butoxycarbonyl) amino)-3-cyclopropylpropanoate (2.5 g, 67%) as an off-white solid.
1H-NMR (CDCl3, 500 MHz): δ 5.20-5.17 (m, 1H), 4.40-4.37 (m, 1H), 3.75 (s, 3H), 1.70-1.67 (m, 2H), 1.44 (s, 9H), 0.75-0.65 (m, 1H), 0.52-0.47 (m, 2H), 0.14-0.03 (m, 2H); TLC: 20% EtOAc:hexane (Rf: 0.7).
Synthesis of (S)-3-cyclopropyl-2-(methylamino) propan-1-ol
To a stirred solution of methyl (S)-2-((tert-butoxycarbonyl) amino)-3-cyclopropylpropanoate (500 mg, 2.05 mmol) in dry THF (10 mL) under an argon atmosphere was added lithium aluminum hydride (156 mg, 4.11 mmol) at 0° C. The reaction mixture was stirred at 80° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium sulfate solution (50 mL). The filtrate was concentrated in vacuo to obtain (S)-3-cyclopropyl-2-(methylamino) propan-1-ol (200 mg, crude) as an off-white solid used in the next step without further purification. TLC: 20% EtOAc:hexane (Rf: 0.2).
Synthesis of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-cyclopropylpropan-1-ol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (200 mg, 0.70 mmol) in THF (2 mL) under an argon atmosphere were added methyl (S)-2-((tert-butoxycarbonyl) amino)-3-cyclopropylpropanoate (181 mg, 1.40 mmol), (±) BINAP (65 mg, 0.10 mmol) and cesium carbonate (319 mg, 0.98 mmol). The suspension was purged with argon for 30 min. Pd2(dba)3 (32 mg, 0.03 mmol) was added to the reaction mixture at room temperature. The reaction mixture was stirred at 80° C. for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-cyclopropylpropan-1-ol (80 mg, 30%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.75 (s, 1H), 7.27 (d, 2H), 6.90 (d, 2H), 4.97 (s, 2H), 4.83-4.78 (m, 1H), 3.82 (s, 3H), 3.62-3.56 (m, 1H), 3.03 (s, 3H), 2.04-2.00 (m, 1H), 1.24-1.20 (m, 1H), 0.58-0.53 (m, 1H), 0.47-0.39 (m, 2H), 0.05-0.01 (m, 2H); TLC: 20% EtOAc:hexane (Rf: 0.5).
Synthesis of (S)-2-chloro-4-((1-cyclopropyl-3-hydroxypropan-2-yl) (methyl) amino) pyrimidin-5-ol
To a stirred solution of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3-cyclopropylpropan-1-ol (80 mg, 0.21 mmol) in CH2Cl2 (1 mL) under an argon atmosphere was added trifluoroacetic acid (0.1 mL, 0.21 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with a saturated sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (S)-2-chloro-4-((1-cyclopropyl-3-hydroxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (30 mg, 55%) as an off-white solid. LCMS: 257.8 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.64 min. 0.05% Aq TFA; ACN 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.4).
Synthesis of (S)-2-chloro-7-(cyclopropylmethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-((1-cyclopropyl-3-hydroxypropan-2-yl) (methyl) amino) pyrimidin-5-ol (25 mg, 0.09 mmol) in THF (0.5 mL) under an argon atmosphere were added triphenylphosphine (38 mg, 0.14) and diisopropylazodicarboxylate (29 mg, 0.14 mmol) at 0° C. The reaction mixture was stirred for 30 min at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated ammonium chloride solution (10 mL) and extracted with CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford (S)-2-chloro-7-(cyclopropylmethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (10 mg, 43%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.60 (s, 1H), 4.20 (d, 1H), 3.99 (d, 1H), 3.50-3.47 (m, 1H), 3.20 (s, 3H), 2.67-2.62 (m, 2H), 0.71-0.66 (m, 1H), 0.58-0.45 (m, 2H), 0.20-0.18 (m, 1H), 0.10-0.02 (m, 1H); TLC: 40% EtOAc:hexane (Rf: 0.6).
Example 157
Synthesis of (S)-2-chloro-7-(cyclopropylmethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of methyl (S)-2-amino-2-cyclobutylacetate
To a stirred solution of (S)-2-amino-2-cyclobutylacetic acid (1 g, 7.81 mmol) in MeOH (10 mL) under an argon atmosphere was added thionyl chloride (1.1 g, 9.36 mmol) at 0° C. The reaction mixture was stirred at reflux for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain methyl (S)-2-amino-2-cyclobutylacetate (1 g, crude) as a white solid used for the next step without further purification. 1H-NMR (CD3OD, 500 MHz): δ 3.97 (d, 1H), 3.81 (s, 3H), 2.79-2.70 (m, 1H), 2.17-2.00 (m, 5H), 1.90-1.80 (m, 1H); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of methyl (S)-2-((tert-butoxycarbonyl) amino)-2-cyclobutylacetate
To a stirred solution of methyl (S)-2-amino-2-cyclobutylacetate (200 mg, 1.40 mmol) in CH2Cl2 (5 mL) under an argon atmosphere were added triethylamine (0.24 mL, 1.69 mmol) and Boc anhydride (368 mg, 1.69 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a 10% citric acid solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were washed with water (20 mL), brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo to afford methyl (S)-2-((tert-butoxycarbonyl) amino)-2-cyclobutylacetate (300 mg, 88%) as a white solid used in the next step without further purification. TLC: EtOAc (Rf: 0.6).
Synthesis of (S)-2-cyclobutyl-2-(methylamino) ethan-1-ol
To a stirred solution of methyl (S)-2-amino-2-cyclobutylacetate (300 mg, 1.24 mmol) in dry THF (5 mL) under argon atmosphere was added lithium aluminum hydride (188 mg, 4.96 mmol) at 0° C. The reaction mixture was stirred at 0° C. for 4 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1N sodium hydroxide solution (50 mL) and filtered. The filtrate was concentrated in vacuo to obtain (S)-2-cyclobutyl-2-(methylamino) ethan-1-ol (160 mg, 81%) as an off-white solid. TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)(methyl)amino)-2-cyclobutylethan-1-ol
To a stirred solution of (S)-2-cyclobutyl-2-(methylamino) ethan-1-ol (300 mg, 1.05 mmol) in isopropanol (3 mL) under an argon atmosphere were added diisopropylethylamine (272 mg, 2.11 mmol) and 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (136 mg, 1.05 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 48 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-cyclobutylethan-1-ol (120 mg, 30%) as a pale yellow liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.88 (s, 1H), 7.43-7.40 (m, 2H), 6.99-6.94 (m, 2H), 5.08-5.00 (m, 2H), 4.93-4.90 (m, 1H), 4.60-4.58 (m, 1H), 3.75 (s, 3H), 2.70 (br s, 3H), 1.90-1.80 (m, 1H), 1.73-1.60 (m, 4H), 1.50-1.30 (m, 2H); TLC: 30% EtOAc:hexane (Rf: 0.2).
Synthesis of (S)-2-chloro-4-((1-cyclobutyl-2-hydroxyethyl) (methyl) amino) pyrimidin-5-ol
To a stirred solution of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-cyclobutylethan-1-ol (120 mg, 0.38 mmol) in THF (0.5 mL) under an argon atmosphere was added trifluoroacetic acid (0.5 mL) at 0° C. The reaction mixture was stirred for 4 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with a saturated sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford (S)-2-chloro-4-((1-cyclobutyl-2-hydroxyethyl) (methyl) amino) pyrimidin-5-ol (280 mg, 90%) as a white solid used in the next step without further purification. TLC: 50% EtOAc:hexane (Rf: 0.1).
Synthesis of (S)-2-chloro-7-cyclobutyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-((1-cyclobutyl-2-hydroxyethyl) (methyl) amino) pyrimidin-5-ol (48 mg, 0.18 mmol) in THF (0.5 mL) under an argon atmosphere were added triphenylphosphine (45 mg, 0.22) and diisopropylazodicarboxylate (58 mg, 0.22 mmol) at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford (S)-2-chloro-7-cyclobutyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (20 mg, 45%) as a white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.62 (s, 1H), 4.10 (d, 1H), 3.87 (d, 1H), 3.35 (d, 1H), 3.22 (s, 3H), 2.63-2.59 (m, 1H), 2.20-1.90 (m, 4H), 1.87-1.80 (m, 2H); TLC: 20% EtOAc:hexane (Rf: 0.5).
Example 158
Synthesis of 4-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide







Synthesis of methyl 2-(((benzyloxy) carbonyl) amino)-2-(tetrahydro-4H-thiopyran-4-ylidene) acetate
To a stirred solution of methyl 2-(((benzyloxy) carbonyl) amino)-2-(dimethoxyphosphoryl) acetate (15 g, 45.31 mmol) in toluene (150 mL) under an argon atmosphere was added tetramethylguanidine (5.5 mL, 43.50 mmol) at −70° C. and stirred for 1 h. Then tetrahydro-4H-thiopyran-4-one (5 g, 0.96 mmol) was added to the reaction mixture at −70° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a 1% citric acid solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were washed with brine (100 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with n-hexane (2×50 mL) to afford methyl 2-(((benzyloxy) carbonyl) amino)-2-(tetrahydro-4H-thiopyran-4-ylidene) acetate (8.5 g, 58%) as a white solid. LCMS: 321.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.53 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.6).
Synthesis of methyl 2-(((benzyloxy) carbonyl) amino)-2-(tetrahydro-2H-thiopyran-4-yl) acetate
To a stirred solution of methyl 2-(((benzyloxy) carbonyl) amino)-2-(tetrahydro-4H-thiopyran-4-ylidene) acetate (8 g, 24.92 mmol) in ethanol (80 mL) under an argon atmosphere were added sodium borohydride (4.73 g, 124.61 mmol) and NiCl2.6H2O (2.96 g, 12.46 mmol) at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The residue was dissolved in EtOAc (100 mL) and washed with water (100 mL). The organic extract was dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford methyl 2-(((benzyloxy) carbonyl) amino)-2-(tetrahydro-2H-thiopyran-4-yl) acetate (4 g, 50%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.40-7.29 (m, 5H), 5.15-5.06 (m, 2H), 4.36-4.30 (m, 1H), 3.75 (s, 3H), 2.73-2.56 (m, 4H), 2.01 (d, 1H), 1.86 (d, 2H), 1.46-1.42 (m, 2H); LCMS: 324.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.32 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.5).
Synthesis of benzyl (2-hydroxy-1-(tetrahydro-2H-thiopyran-4-yl) ethyl) carbamate
To a stirred solution of methyl 2-(((benzyloxy) carbonyl) amino)-2-(tetrahydro-2H-thiopyran-4-yl) acetate (4 g, 12.38 mmol) in THF (40 mL) under an argon atmosphere was added lithium aluminum hydride (1.88 g, 49.53 mmol) at 0° C. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1N sodium hydroxide solution (100 mL), filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford benzyl (2-hydroxy-1-(tetrahydro-2H-thiopyran-4-yl) ethyl) carbamate (1.7 g, 47%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.40-7.30 (m, 4H), 7.00-6.98 (m, 1H), 5.01 (s, 2H), 4.60-4.55 (m, 1H), 3.42-3.36 (m, 3H), 2.60-2.50 (m, 4H), 1.93-1.88 (m, 2H), 1.59-1.50 (m, 1H), 1.39-1.30 (m, 2H); LCMS: 296.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.82 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of benzyl (1-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-2-hydroxyethyl) carbamate
To a stirred solution of benzyl (2-hydroxy-1-(tetrahydro-2H-thiopyran-4-yl) ethyl) carbamate (1.7 g, 5.76 mmol) in CH2Cl2 (17 mL) under an argon atmosphere was added m-chloroperoxy benzoic acid (4.97 g, 28.81 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a sodium sulfate solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were washed with a saturated sodium bicarbonate solution (50 mL), brine (50 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford benzyl (1-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-2-hydroxyethyl) carbamate (1.5 g, 83%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.40-7.30 (m, 5H), 7.11 (d, 1H), 5.01 (s, 2H), 4.70-4.65 (m, 1H), 3.52-3.49 (m, 1H), 3.40-3.35 (m, 2H), 3.15-3.10 (m, 1H), 3.05-3.00 (m, 3H), 1.98-1.90 (m, 3H), 1.79-1.65 (m, 2H); LCMS: 296.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.82 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 60% EtOAc:hexane (Rf: 0.4).
Synthesis of 4-(1-amino-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide
To a stirred solution of benzyl (1-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-2-hydroxyethyl) carbamate (250 mg, 0.76 mmol) in MeOH (2.5 mL) under an argon atmosphere was added 10% Pd/C (catalytic amount) at room temperature. The reaction mixture was stirred for 16 h under a H2 atmosphere of 40 psi at room temperature in steel bomb. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered and the filtrate was concentrated in vacuo to obtain 4-(1-amino-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide (105 mg, 71%) as a white solid. LCMS: 194 (M+1); (column; Eclipse XDB C-18 (50×4.6 mm, 5 μm); RT 1.81 min 5 mM Aq NH4OAc: ACN; 1.0 mL/min); TLC: 60% EtOAc:hexane (Rf: 0.4).
Synthesis of 4-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide
To a stirred solution of 2,4-dichloro-5-((4-methoxybenzyl)oxy)pyrimidine (650 mg, 2.28 mmol) in isopropyl alcohol (6.5 mL) under an argon atmosphere were added diisopropylethylamine (8.4 mL, 4.56 mmol) and 4-(1-amino-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide (440 mg, 2.28 mmol) at room temperature. The reaction mixture was stirred at 100° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexanes to afford 4-(1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide (425 mg, 42%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.67 (s, 1H), 7.31 (d, 2H), 6.93 (d, 2H), 5.73 (d, 1H), 5.01 (s, 2H), 4.18-4.15 (m, 2H), 3.86-3.84 (m, 1H), 3.83 (s, 3H), 3.79-3.73 (m, 1H), 3.13-3.03 (m, 2H), 3.02-2.90 (m, 2H), 2.06-1.94 (m, 3H); LCMS: 417.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.80 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 80% EtOAc:hexane (Rf: 0.3).
Synthesis of 4-(1-((2-chloro-5-hydroxypyrimidin-4-yl) amino)-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide
To a stirred solution of 4-(1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide (425 mg, 0.96 mmol) in CH2Cl2 (5 mL) under an argon atmosphere was added trifluoroacetic acid (2 mL) at 0° C. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with a saturated sodium bicarbonate solution (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with n-hexane (2×20 mL) to afford 4-(1-((2-chloro-5-hydroxypyrimidin-4-yl) amino)-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide (280 mg, 90%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 10.41 (br s, 1H), 7.48 (s, 1H), 6.86 (d, 1H), 3.61-3.45 (m, 2H), 3.13-2.95 (m, 4H), 2.06 (d, 1H), 2.02-1.90 (m, 2H), 1.75-1.62 (m, 2H); LCMS: 322.5 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5 μm); RT 6.34 min 5 mM Aq NH4OAc: ACN; 1.0 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.2).
Synthesis of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl)(1-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-2-hydroxyethyl) carbamate
To a stirred solution of 4-(1-((2-chloro-5-hydroxypyrimidin-4-yl) amino)-2-hydroxyethyl) tetrahydro-2H-thiopyran 1, 1-dioxide (300 mg, 3.11 mmol) in CH2Cl2 (10 mL) under an argon atmosphere were added triethylamine (0.53 mL, 3.73 mmol) and Boc anhydride (800 mg, 3.73 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were washed with water (20 mL), brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-3% MeOH: CH2Cl2 to afford tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl)(1-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-2-hydroxyethyl) carbamate (250 mg, 64%) as a white solid. 1H-NMR (CDCl3, 500 MHz): δ 8.42 (s, 1H), 4.13-3.96 (m, 3H), 3.06-3.04 (m, 2H), 3.01-2.93 (m, 1H), 2.93-2.82 (m, 1H), 2.21 (br s, 2H), 2.00-1.88 (m, 2H), 1.49 (s, 9H), 1.29 (s, 3H): LCMS: 321.9 (M-Boc); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.85 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Synthesis of tert-butyl 2-chloro-7-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-6, 7-dihydro-8H-pyrimido [5, 4-b] [1, 4] oxazine-8-carboxylate
To a stirred solution of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl)(1-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-2-hydroxyethyl) carbamate (100 mg, 0.23 mmol) in THF (1 mL) under an argon atmosphere were added triphenylphosphine (57 mg, 0.22 mmol) and diisopropylazodicarboxylate (75 mg, 0.28 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were washed with water (20 mL), brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-3% MeOH: CH2Cl2 to afford tert-butyl 2-chloro-7-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-6, 7-dihydro-8H-pyrimido [5, 4-b] [1, 4] oxazine-8-carboxylate (250 mg, 64%) as a white solid. LCMS: 303.8 (M-Boc); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.22 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Synthesis of 4-(2-chloro-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide
To a stirred solution of tert-butyl 2-chloro-7-(1, 1-dioxidotetrahydro-2H-thiopyran-4-yl)-6, 7-dihydro-8H-pyrimido [5, 4-b] [1, 4] oxazine-8-carboxylate (100 mg, 0.24 mmol) in CH2Cl2 (1 mL) under an argon atmosphere was added 4N HCl in 1, 4-dioxane (10 mL) at 0° C. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The residue was basified with a saturated sodium bicarbonate solution (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford 4-(2-chloro-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide (45 mg, 60%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.66-8.64 (m, 1H), 7.69-7.67 (m, 1H), 4.25 (dd, 1H), 3.96 (dd, 1H), 3.53-3.51 (m, 1H), 3.20-2.96 (m, 4H), 2.11 (d, 1H), 2.02-2.00 (m, 1H), 1.87-1.78 (m, 2H), 1.77-1.66 (m, 1H); LCMS: 304.2 (M+1); (column; X-select CSH C-18 (50×30 mm, 3.5 μm); RT 3.21 min. 5 mM NH4Oac in water: ACN; 0.8 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.2).
Synthesis of 4-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide
To a stirred solution of 4-(2-chloro-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide (45 mg, 0.15 mmol) in DMF (0.1 mL) under an argon atmosphere were added sodium hydride (5.4 mg, 0.22 mmol) and methyl iodine (25 mg, 0.18 mmol) at 0° C. The reaction mixture was stirred for 5 min at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was basified with an ammonium chloride solution (10 mL) and extracted with 10% MeOH/CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 4-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide (20 mg, 42%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.26 (s, 1H), 4.37 (dd, 1H), 3.89 (dd, 1H), 3.36-3.32 (m, 1H), 3.24 (s, 3H), 3.12-2.88 (m, 4H), 2.13-2.03 (m, 5H); LCMS: 317.9 (M+1); (column; X-select CSH C-18 (50×30 mm, 3.5 μm); RT 2.24 min. 0.05% Aq TFA: ACN; 0.8 mL/min).
Example 159
Synthesis of (S)-7-(tert-butyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazine




Synthesis of 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3, 3-dimethylbutan-1-ol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (3.2 g, 11.45 mmol) in 1, 4-dioxane (60 mL) under an argon atmosphere were added diisopropylethylamine (1.5 g, 11.45 mmol) and (S)-3, 3-dimethyl-2-(methylamino) butan-1-ol (1.5 g, 11.45 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3, 3-dimethylbutan-1-ol (2 g, 49%) as a pale yellow liquid. LCMS: 380.0 (M+); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.64 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.4).
Synthesis of (S)-2-chloro-4-((1-hydroxy-3, 3-dimethylbutan-2-yl) (methyl) amino) pyrimidin-5-ol
To a stirred solution of (S)-2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-3, 3-dimethylbutan-1-ol (2 g, 8.27 mmol) in CH2Cl2 (20 mL) under an argon atmosphere was added trifluoroacetic acid (5 mL) at 0° C. The reaction mixture was stirred for 30 min at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford (S)-2-chloro-4-((1-hydroxy-3, 3-dimethylbutan-2-yl) (methyl) amino) pyrimidin-5-ol (1.1 g, 80%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.92 (br s, 1H), 7.53 (s, 1H), 4.99-4.92 (m, 1H), 4.60-4.58 (m, 1H), 3.75-3.66 (m, 1H), 3.65-3.53 (m, 1H), 3.99 (s, 3H), 0.91 (s, 9H); LCMS: 259.9 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.94 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.4).
Synthesis of (S)-7-(tert-butyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-((1-hydroxy-3, 3-dimethylbutan-2-yl) (methyl) amino) pyrimidin-5-ol (1.1 g, 4.24 mmol) in THF (20 mL) under an argon atmosphere were added triphenylphosphine (1.3 g, 5.09 mmol) and diisopropylazodicarboxylate (1.36 g, 5.09 mmol) at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexane to afford (S)-7-(tert-butyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (360 mg, 36%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.62 (s, 1H), 4.51 (d, 1H), 3.74 (dd, 1H), 3.29 (s, 3H), 3.11-3.08 (m, 1H), 1.00 (s, 9H); LCMS: 242.0 (M+); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.39 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.5).
Example 160
Synthesis of 2-chloro-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of methyl 2-((2-(benzyloxy)-2-oxoethyl) amino)-2-(oxetan-3-ylidene) acetate
To a stirred solution of methyl 2-(((benzyloxy) carbonyl) amino)-2-(dimethoxyphosphoryl) acetate (20 g, 60.42 mmol) in toluene (200 mL) under an argon atmosphere was added 1, 1, 3, 3-tetramethyl guanidine (7 g, 60.42 mmol) at −78° C. and stirred for 30 min. Then a solution of oxetan-3-one (4.2 g, 60.42 mmol) in toluene (20 mL) was added to the reaction mixture at −78° C. The reaction mixture was warmed to room temperature and stirred for 18 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (500 mL) and extracted with EtOAc (2×250 mL) and 20% MeOH: CH2Cl2 (2×250 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5-10% MeOH: CH2Cl2 to afford methyl 2-((2-(benzyloxy)-2-oxoethyl) amino)-2-(oxetan-3-ylidene) acetate (13 g, 78%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.76 (br s, 1H), 7.40-7.30 (m, 5H), 5.30-5.27 (m., 2H), 5.17-5.14 (m, 2H), 5.04 (s, 2H), 3.70-3.65 (m, 1H), 3.64 (s, 2H); LCMS: 277.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.12 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.7).
Synthesis of methyl 2-amino-2-(oxetan-3-yl) acetate
To a stirred solution of methyl 2-((2-(benzyloxy)-2-oxoethyl) amino)-2-(oxetan-3-ylidene) acetate (13 g, 46.93 mmol) in 50% MeOH: CH2Cl2 (700 mL) under an argon atmosphere was added dry 10% Pd(OH)2 (2 g) at room temperature. The reaction mixture was stirred at room temperature for 12 h under a hydrogen atmosphere. After consumption of the starting material (monitored by TLC), the reaction mixture was filtered, washed with 50% MeOH: CH2Cl2 (2×100 mL) and the filtrate was concentrated in vacuo to afford methyl 2-amino-2-(oxetan-3-yl) acetate (5 g, crude) as a brown liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 4.55-4.50 (m, 2H), 4.49-4.40 (m, 2H), 3.84 (d, 1H), 3.70-3.65 (m, 1H), 3.62 (s, 3H), 3.17 (s, 2H); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Synthesis of methyl 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-2-(oxetan-3-yl) acetate
To a stirred solution of methyl 2-amino-2-(oxetan-3-yl) acetate (2 g, 13.79 mmol) in 2-propanol (12 mL) under an argon atmosphere were added diisopropylethylamine (9 g, 68.96 mmol) and 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine) (3.9 g, 13.79 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexane to afford methyl 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-2-(oxetan-3-yl) acetate (1.8 g, 33%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.85 (s, 1H), 7.82 (d, 1H), 7.40 (d, 2H), 6.95 (d, 2H), 5.13 (s, 2H), 4.97 (dd, 2H), 4.66 (dd, 1H), 4.54 (dd, 2H), 4.49 (t, 1H), 4.30 (t, 1H), 3.75 (s, 3H), 3.60 (s, 3H), 3.59-3.57 (m, 1H); LCMS: 394.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.81 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.6).
Synthesis of methyl 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-(oxetan-3-yl) acetate
To a stirred solution of methyl 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-2-(oxetan-3-yl) acetate (3.6 g, 9.14 mmol) in dry DMF (50 mL) under an argon atmosphere was added sodium hydride (732 mg, 27.44 mmol) at 0° C. and stirred for 10 min. Then a solution of methyl iodide (2.16 g, 13.71 mmol) in DMF (10 mL) was added to the reaction mixture at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated ammonium chloride solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain methyl 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-(oxetan-3-yl) acetate (3.5 g, crude) as an off-white solid in the next step without further purification. LCMS: 408 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.42 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-(oxetan-3-yl) ethan-1-ol
To a stirred solution of methyl 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-(oxetan-3-yl) acetate (3.5 g, crude) in dry DMF (35 mL) under an argon atmosphere was added 2M lithium borohydride in THF (567 mg, 25.70 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated ammonium chloride solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-(oxetan-3-yl) ethan-1-ol (2.4 g, 74%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.95 (s, 1H), 7.43 (d, 2H), 6.95 (d, 2H), 5.27-5.20 (m, 1H), 5.08 (s, 2H), 4.74 (t, 1H), 4.55 (dd, 1H), 4.48 (dd, 2H), 4.30-4.21 (m, 2H), 3.76 (s, 3H), 3.58-3.40 (m, 1H), 3.39-3.33 (m, 1H), 2.85 (s, 3H); LCMS: 380.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.53 min 5 mM Aq NH4OAc: ACN: 0.8 mL/min); TLC: 70% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-chloro-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) (methyl) amino)-2-(oxetan-3-yl) ethan-1-ol (750 mg, 2.90 mmol) in dry DMF (20 mL) under an argon atmosphere were added triphenylphosphine (1.5 g, 5.78 mmol) and diisopropylazodicarboxylate (1.1 g, 5.78 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (30 mL) and extracted with EtOAc (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 2-chloro-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (550 mg, 78%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.68 (s, 1H), 4.69-4.61 (m, 2H), 4.59-4.51 (m, 2H), 4.13 (dd, 1H), 4.09 (d, 1H), 3.94 (dd, 1H), 3.30-3.26 (m, 1H), 3.10 (s, 3H); LCMS: 242 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.36 min 2.5 mM NH4OAc in water: 5% ACN; ACN: 5% 2.5 mM NH4OAc in water: 1.0 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.6).
Example 161
Synthesis of 2-chloro-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-bromo-1-(1-(trifluoromethyl) cyclopropyl) ethan-1-one
To a stirred solution of 1-(trifluoromethyl) cyclopropane-1-carboxylic acid (1 g, 6.49 mmol) in CH2Cl2 (10 mL) under an argon atmosphere were added oxalyl chloride (0.6 mL, 7.14 mmol) and DMF (5 drops) at 0° C. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting material (monitored by TLC), the volatile components were evaporated in vacuo. To the stirred solution of the above residue in acetonitrile (7 mL) was added 10% TMS diazomethane in hexane solution (14.7 mL) at 0° C. The reaction mixture was stirred for 2 h at 0° C. Then 48% HBr in water (1.2 mL) was added to the reaction mixture at 0° C. The reaction mixture was stirred for 30 min at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated sodium bicarbonate solution (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-bromo-1-(1-(trifluoromethyl) cyclopropyl) ethan-1-one (1.2 g, crude) as a brown oil.
Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(1-(trifluoromethyl) cyclopropyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (750 mg, 4.68 mmol) in acetonitrile (10 mL) under an argon atmosphere were added cesium carbonate (3 g, 9.36 mmol) and 2-bromo-1-(1-(trifluoromethyl) cyclopropyl) ethan-1-one (1.2 g, 5.15 mmol) at 0° C. The reaction mixture was stirred for 2 h at 0° C. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with ice cold water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(1-(trifluoromethyl) cyclopropyl) ethan-1-one (1.1 g, crude) as a colorless oil. LCMS: 309.8 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7μ); RT 2.39 min. 0.025% Aq TFA+5% ACN; ACN+5% 0.025% Aq TFA 1.2 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.6).
Synthesis of 2-chloro-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(1-(trifluoromethyl) cyclopropyl) ethan-1-one (2 g, 6.47 mmol) in dichloroethane (4 mL) under an argon atmosphere were added trifluoroacetic acid (catalytic amount) and sodium triacetoxyborohydride (2.7 g, 12.94 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 48 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1N sodium hydroxide solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexanes to afford 2-chloro-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 51%) as a white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.68 (s, 1H), 4.50 (d, 1H), 4.01 (dd, 1H), 3.89-3.87 (m, 1H), 3.20 (s, 3H), 1.13-1.01 (m, 3H), 0.59-0.55 (m, 1H); LCMS: 293.8 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7μ); RT 2.41 min. 0.025% Aq TFA+5% ACN; ACN+5% 0.025% Aq TFA 1.2 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.3).
Example 162
Synthesis of 2-chloro-7-(2, 5-dichloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 5-dichloro-4-methoxyphenyl) ethan-1-one
To a stirred solution of 2-chloro-4-(methylamino) pyrimidin-5-ol (500 mg, 3.14 mmol) in CH3CN (5 mL) under an argon atmosphere were added cesium carbonate (2.0 g, 6.28 mmol) and 2-bromo-1-(2, 5-dichloro-4-methoxyphenyl) ethan-1-one (1 g, 3.45 mmol) at room temperature. The reaction mixture was stirred for 3 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfite, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 5-dichloro-4-methoxyphenyl) ethan-1-one (600 mg, 56%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.90-7.88 (m, 2H), 7.42 (s, 1H), 7.34 (s, 1H), 4.25 (d, 1H), 4.05 (d, 1H), 3.93 (s, 3H), 2.73 (s, 3H); LCMS: 376.4 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.39 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Synthesis of 2-chloro-7-(2, 5-dichloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-((2-chloro-4-(methylamino) pyrimidin-5-yl) oxy)-1-(2, 5-dichloro-4-methoxyphenyl) ethan-1-one (600 mg, 1.59 mmol) in dichloroethane (6 mL) under an argon atmosphere were added trifluoroacetic acid (0.12 mL, 1.59 mmol) and sodium triacetoxyborohydride (710 mg, 3.35 mmol) at room temperature. The reaction mixture was stirred for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfite, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexane to afford 2-chloro-7-(2, 5-dichloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (300 mg, 52%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.74 (s, 1H), 7.00 (s, 1H), 6.98 (s, 1H), 5.00 (t, 1H), 4.26 (d, 1H), 4.20 (d, 1H), 3.90 (s, 3H), 3.13 (s, 3H); LCMS: 361.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.88 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.5).
Example 163
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.29 mmol) in isopropanol (0.8 mL) under an argon atmosphere were added concentrated hydrochloric acid (catalytic amount) and 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (97 mg, 0.50 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with a saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (12 mg, 10%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.99 (m, 1H), 7.73 (s, 1H), 7.60 (s, 1H), 7.40-7.39 (m, 1H), 7.30 (t, 1H), 7.07-7.00 (m, 3H), 4.71 (s, 1H), 4.21 (s, 2H), 3.13 (s, 3H), 2.23 (s, 3H); Mass (ESI): 471.4 [M+1]; LCMS: 471.6 (M+1); (column; X-Selected CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.99 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 164
Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (120 mg, 0.56 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (227 mg, 1.12 mmol) and cesium carbonate (256 mg, 0.78 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: EtOAc to afford (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (42 mg, 19%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.03 (s, 1H), 7.85-7.82 (m, 1H), 7.60-7.58 (m, 1H), 7.56 (s, 1H), 7.29 (d, 1H), 7.12 (d, 1H), 6.99 (s, 1H), 5.09 (t, 1H), 4.30-4.25 (m, 1H), 3.88-3.80 (m, 1H), 3.77 (s, 3H), 3.62-3.59 (m, 1H), 3.52-3.42 (m, 2H), 3.20 (s, 3H), 2.13 (s, 3H); Mass (ESI): 383.4 [M+1]; LCMS: 383.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.95 min 5 mM Aq NH4OAc in water: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH-C-18 2.1×50 mm, 1.7 μm); RT 1.12 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 96.2% RT=11.93 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: 15.31 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 165
Synthesis of 7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (27 mg, 0.03 mmol) and Xantphos (52 mg, 0.07 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(5-chloro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (220 mg, 0.60 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (240 mg, 1.20 mmol) and cesium carbonate (275 mg, 0.84 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (25 mg, 8%) as an off-white solid. LCMS: 530.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.63 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.85 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 165 was separated using a Chiralpak IB column (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 95:05) as mobile phase) to provide the compound of Example 165A (Fraction I (+)) and pure Example 165B (Fraction II (−)).
Example 165A
Synthesis of (+)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 165A was produced as described in Example 165. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.81 (d, 1H), 7.77 (s, 1H), 7.70 (s, 2H), 7.60-7.58 (m, 1H), 7.30-7.23 (m, 2H), 7.10 (d, 1H), 6.98 (s, 1H), 5.11-5.10 (m, 1H), 4.30-4.25 (m, 1H), 4.14-4.10 (m, 1H), 3.88 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 531.1 [M+1]; LCMS: 531.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.98 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=13.21 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +57.16 (c=0.25, CH2Cl2).
Example 165B
Synthesis of (−)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 165B was produced as described in Example 165. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.81 (d, 1H), 7.77 (s, 1H), 7.70 (s, 2H), 7.60-7.58 (m, 1H), 7.30-7.23 (m, 2H), 7.10 (d, 1H), 6.98 (s, 1H), 5.11-5.10 (m, 1H), 4.30-4.25 (m, 1H), 4.16-4.10 (m, 1H), 3.88 (s, 3H), 3.11 (s, 3H), 2.21 (s, 3H); Mass (ESI): 531.1 [M+1]; LCMS: 531.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.97 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 95.8% RT=14.46 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −52.46 (c=0.25, CH2Cl2).
Example 166
Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(2-chloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere were added cesium carbonate (200 mg, 0.61 mmol) followed by 2-bromo-1-(2-chloro-4-methoxyphenyl) ethan-1-one (122 mg, 0.33 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(2-chloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (90 mg, crude) as a pale brown solid. LCMS: 510.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2(Rf: 0.4).
Synthesis of 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(2-chloro-4-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (160 mg, 0.31 mmol) in 1, 2-dichloroethane (1 mL) under an argon atmosphere were added trifluoroacetic acid (35.8 mg, 0.31 mmol) followed by sodium triacetoxyborohydride (140 mg, 0.66 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 13%) as a white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.67 (s, 1H), 7.58 (s, 1H), 7.27-7.23 (m, 1H), 7.20-7.18 (m, 1H), 7.06 (s, 1H), 7.01-6.97 (m, 2H), 6.89-6.86 (m, 1H), 5.00-4.98 (m, 1H), 4.22-4.20 (m, 2H), 3.83 (s, 3H), 3.80 (s, 3H), 3.13 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493.1 [M+1]; LCMS: 493 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.50 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.73 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 166 was separated using a Chiralpak IC column (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 80:20) as mobile phase) to provide the compound of Example 166A (Fraction I (+)) and the compound of Example 166B (Fraction II (−)).
Example 166A
Synthesis of (+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 166A was produced as described in Example 166. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.69 (br s, 1H), 7.57 (s, 1H), 7.25-7.23 (m, 1H), 7.20-7.19 (m, 1H), 7.06 (s, 1H), 7.00-6.97 (m, 2H), 6.90-6.88 (m, 1H), 5.11-5.09 (m, 1H), 4.23-4.21 (m, 2H), 3.84 (s, 3H), 3.80 (s, 3H), 3.13 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493.7 [M+1]; LCMS: 493.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.47 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 100% RT=30.08 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +196.81 (c=0.25, CH2Cl2).
Example 166B
Synthesis of (−)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 166B was produced as described in Example 166. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.69 (br s, 1H), 7.57 (s, 1H), 7.25-7.23 (m, 1H), 7.20-7.19 (m, 1H), 7.06 (s, 1H), 7.00-6.97 (m, 2H), 6.90-6.88 (m, 1H), 5.11-5.09 (m, 1H), 4.23-4.21 (m, 2H), 3.84 (s, 3H), 3.80 (s, 3H), 3.13 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493.6 [M+1]; LCMS: 493.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.48 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 99.3% RT=34.23 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −192.68 (c=0.25, CH2Cl2).
Example 167
Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(2-chloro-5-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (50 mg, 0.15 mmol) in CH3CN (0.5 mL) under an argon atmosphere were added cesium carbonate (100 mg, 0.30 mmol) followed by 2-bromo-1-(2-chloro-5-methoxyphenyl) ethan-1-one (61 mg, 0.16 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(2-chloro-5-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (60 mg, crude) as a pale brown solid. LCMS: 509 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.42 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(2-chloro-5-methoxyphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (150 mg, 0.29 mmol) in 1, 2-dichloroethane (1 mL) under an argon atmosphere were added trifluoroacetic acid (0.02 mL, 0.29 mmol) followed by sodium triacetoxyborohydride (131 mg, 0.61 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (25 mg, 16%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.87-7.82 (m, 2H), 7.59 (s, 1H), 7.39 (d, 1H), 7.27-7.21 (m, 1H), 7.19 (d, 1H), 7.00 (s, 1H), 6.90 (d, 1H), 6.58-6.56 (m, 1H), 5.11-5.08 (m, 1H), 4.30-4.20 (m, 2H), 3.83 (s, 3H), 3.67 (s, 3H), 3.14 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493 [M+1]; LCMS: 493 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.71 min. ACN: 0.025% TFA (Aq); 0.50 mL/min TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 167 was separated using a Chiralpak IC column (250×4.6 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 167A (Fraction I (+)) and the compound of Example 167B (Fraction II (−)).
Example 167A
Synthesis of (+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 167A was produced as described in Example 167. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.75 (s, 1H), 7.69 (s, 1H), 7.60 (s, 1H), 7.39 (d, 1H), 7.26-7.24 (m, 1H), 7.19 (d, 1H), 6.97 (s, 1H), 6.91 (d, 1H), 6.58-6.56 (m, 1H), 5.11-5.10 (m, 1H), 4.30-4.20 (m, 2H), 3.86 (s, 3H), 3.70 (s, 3H), 3.17 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493.7 [M+1]; LCMS: 493.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 100% RT=21.27 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +195.20 (c=0.25, CH2Cl2).
Example 167B
Synthesis of (−)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 167B was produced as described in Example 167. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.75 (s, 1H), 7.69 (s, 1H), 7.60 (s, 1H), 7.39 (d, 1H), 7.26-7.24 (m, 1H), 7.19 (d, 1H), 6.97 (s, 1H), 6.91 (d, 1H), 6.58-6.56 (m, 1H), 5.11-5.10 (m, 1H), 4.30-4.20 (m, 2H), 3.86 (s, 3H), 3.70 (s, 3H), 3.17 (s, 3H), 2.21 (s, 3H); Mass (ESI): 493.6 [M+1]; LCMS: 493.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 100% RT=25.76 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −188.43 (c=0.25, CH2Cl2).
Example 168
Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (23 mg, 0.02 mmol) and Xantphos (44 mg, 0.07 mmol) in 1, 4-dioxane (2 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 7-(2, 4-bis (trifluoromethyl) phenyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.50 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (204 mg, 1.00 mmol) and cesium carbonate (229 mg, 0.70 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to afford 7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 45%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.07 (s, 1H), 7.99 (d, 1H), 7.72 (s, 1H), 7.68 (s, 2H), 7.55 (d, 1H), 7.25 (d, 1H), 7.18 (d, 1H), 6.96 (s, 1H), 5.20-5.18 (m, 1H), 4.33-4.30 (m, 1H), 4.17-4.15 (m, 1H), 3.84 (s, 3H), 3.11 (s, 3H), 2.21 (s, 3H); Mass (ESI): 565 [M+1]; LCMS: 565 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.65 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.00 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 168 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 75:25) as mobile phase) to provide the compound of Example 168A (Fraction I (−)) and the compound of Example 168B (Fraction II (+)).
Example 168A
Synthesis of (−)-7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 168A was produced as described in Example 168. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.09 (s, 1H), 7.99 (d, 1H), 7.75 (s, 1H), 7.68 (s, 2H), 7.58 (d, 1H), 7.24 (d, 1H), 7.19 (d, 1H), 6.98 (s, 1H), 5.20-5.18 (m, 1H), 4.33-4.30 (m, 1H), 4.17-4.15 (m, 1H), 3.82 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 565.1 [M+1]; LCMS: 565.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.13 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.01 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 99.37% RT=8.96 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DFA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: −98.16 (c=0.25, CH2Cl2).
Example 168B
Synthesis of (+)-7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 168B was produced as described in Example 168. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.09 (s, 1H), 7.99 (d, 1H), 7.75 (s, 1H), 7.66 (s, 2H), 7.58 (d, 1H), 7.24 (d, 1H), 7.19 (d, 1H), 6.98 (s, 1H), 5.20-5.18 (m, 1H), 4.33-4.30 (m, 1H), 4.17-4.15 (m, 1H), 3.82 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 565.1 [M+1]; LCMS: 565.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.14 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 2.00 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 97.1% RT=10.47 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +97.00 (c=0.25, CH2Cl2).
Example 169
Synthesis of 7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (27 mg, 0.03 mmol) and Xantphos (52 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(2-chloro-4, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.60 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (230 mg, 0.12 mmol) and cesium carbonate (274 mg, 0.84 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with ether (2×10 mL) to afford 7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 68%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.77 (s, 1H), 7.64 (s, 1H), 7.56-7.54 (m, 1H), 7.44-7.40 (m, 1H), 7.37-7.34 (m, 1H), 7.10-7.08 (m, 1H), 6.98-6.96 (m, 1H), 5.15-5.13 (m, 1H), 4.30-4.20 (m, 2H), 3.17 (s, 3H), 2.22 (s, 3H); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 169 was separated using a Chiralpak ADH column (250×4.6 mm: 5 μm; (10 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (40:60); (A:B: 55:45) as mobile phase) to provide the compound of Example 169A (Fraction I (+)) and the compound of Example 169B (Fraction II (−)).
Example 169A
Synthesis of (+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 169A was produced as described in Example 169. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.76 (s, 1H), 7.65 (s, 1H), 7.54-7.52 (m, 1H), 7.42-7.40 (m, 1H), 7.36-7.34 (m, 1H), 7.10-7.08 (m, 1H), 6.95 (t, 1H), 5.15-5.14 (m, 1H), 4.30-4.20 (m, 2H), 3.19 (s, 3H), 2.24 (s, 3H); Mass (ESI): 487.6 [M+1]; LCMS: 487 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.49 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.96 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.8% RT=11.43 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 55:45); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +157.90 (c=0.25, CH2Cl2).
Example 169B
Synthesis of (−)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 169B was produced as described in Example 169. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.76 (s, 1H), 7.65 (s, 1H), 7.3 (t, 1H), 7.42-7.40 (m, 1H), 7.35 (t, 1H), 7.10-7.08 (m, 1H), 6.95 (t, 1H), 5.15-5.14 (m, 1H), 4.30-4.20 (m, 2H), 3.19 (s, 3H), 2.24 (s, 3H); Mass (ESI): 487.6 [M+1]; LCMS: 487 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.48 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.95 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.5% RT=16.83 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 55:45); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −146.04 (c=0.25, CH2Cl2).
Example 170
Synthesis of (S)-(2-((3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol




Synthesis of (S)-(2-((3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (120 mg, 0.56 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (214 mg, 1.12 mmol) and cesium carbonate (256 mg, 0.78 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the reaction (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: EtOAc to afford (S)-(2-((3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (40 mg, 19%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.30 (s, 1H), 8.04-7.99 (m, 1H), 7.74 (s, 1H), 7.58 (s, 1H), 7.51-7.48 (m, 1H), 7.38 (t, 1H), 7.12 (s, 1H), 5.08 (t, 1H), 4.30-4.28 (m, 1H), 3.88-3.83 (m, 1H), 3.65-3.60 (m, 1H), 3.58-3.41 (m, 2H), 3.20 (s, 3H), 2.13 (s, 3H); Mass (ESI): 371.4 [M+1]; LCMS: 371.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.79 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC HSS T-3 100×2.1 mm, 1.8μ); RT 2.89 min. ACN: 0.025% Aq TFA; 1.0 mL/min; Chiral HPLC: 97.8% RT=13.67 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +13.44 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 171
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (63 mg, 0.10 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.72 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (297 mg, 1.45 mmol) and cesium carbonate (331 mg, 1.01 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with MeOH:ether (1:1, 2×10 mL) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (220 mg, 68%) as an off-white solid. LCMS: 444.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.33 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 171 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as mobile phase) to provide the compound of Example 171A (Fraction I (+)) and the compound of Example 171B (Fraction II (−)).
Example 171A
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 171A was produced as described in Example 171. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.30 (m, 2H), 8.13 (s, 1H), 7.60 (s, 1H), 7.40-7.38 (m, 1H), 7.27-7.14 (m, 3H), 7.00 (d, 1H), 5.02-5.00 (m, 1H), 4.28-4.24 (m, 1H), 4.16-4.00 (m, 1H), 4.00 (s, 3H), 3.11 (s, 3H), 2.42 (s, 3H), 2.27 (s, 3H); Mass (ESI): 444.5 [M+1]; LCMS: 444.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=22.44 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +136.12 (c=0.25, CH2Cl2).
Example 171B
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 171B was produced as described in Example 171. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.32-8.30 (m, 2H), 8.13 (s, 1H), 7.60 (s, 1H), 7.40-7.38 (m, 1H), 7.27-7.14 (m, 3H), 7.00 (d, 1H), 5.02-5.00 (m, 1H), 4.28-4.24 (m, 1H), 4.16-4.00 (m, 1H), 4.00 (s, 3H), 3.11 (s, 3H), 2.42 (s, 3H), 2.27 (s, 3H); Mass (ESI): 444.5 [M+1]; LCMS: 444.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 96.1% RT=25.32 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −143.72 (c=0.25, CH2Cl2).
Example 172
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine
To a dry vial was added a suspension of Pd2(dba)3 (10 mg, 0.01 mmol) and Xantphos (19 mg, 0.03 mmol) in 1, 4-dioxane (0.3 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (60 mg, 0.22 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (91 mg, 0.44 mmol) and cesium carbonate (100 mg, 0.31 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 12 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine (80 mg, 84%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 2H), 7.59 (s, 1H), 7.22-7.19 (m, 2H), 6.99 (br s, 1H), 4.29-4.26 (m, 1H), 3.99-3.91 (m, 2H), 3.82 (s, 3H), 3.21 (s, 3H), 2.66-2.57 (m, 2H), 2.21 (s, 3H); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 172 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25) as mobile phase) to provide the compound of Example 172A (Fraction I (−)) and the compound of Example 172B (Fraction II (+)).
Example 172A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




The compound of Example 172A was produced as described in Example 172. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 2H), 7.59 (s, 1H), 7.22-7.19 (m, 2H), 6.99 (br s, 1H), 4.29-4.26 (m, 1H), 3.99-3.91 (m, 2H), 3.82 (s, 3H), 3.21 (s, 3H), 2.66-2.57 (m, 2H), 2.21 (s, 3H); Mass (ESI): 435.4 [M+1]; LCMS: 435.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.56 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.50 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=11.53 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −4.09 (c=0.25, CH2Cl2).
Example 172B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine




The compound of Example 172B was produced as described in Example 172. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 2H), 7.59 (s, 1H), 7.22-7.19 (m, 2H), 6.99 (br s, 1H), 4.29-4.26 (m, 1H), 3.99-3.91 (m, 2H), 3.82 (s, 3H), 3.21 (s, 3H), 2.66-2.57 (m, 2H), 2.21 (s, 3H); Mass (ESI): 435.5 [M+1]; LCMS: 435.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.55 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.50 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.1% RT=13.35 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +5.50 (c=0.25, CH2Cl2).
Example 173
Synthesis of 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (25 mg, 0.02 mmol) and Xantphos (47 mg, 0.08 mmol) in 1, 4-dioxane (2 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(2-chloro-5-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.54 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (209 mg, 1.09 mmol) and cesium carbonate (250 mg, 0.76 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 5 mM NH4OAc (0.1/80, 2/80, 8/30, 15/20, 20/10, 35/10)) to afford 7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (110 mg, 38%) as an off-white solid. LCMS: 519.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.60 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 11.73 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 173 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as mobile phase) to provide the compound of Example 173A (Fraction I (+)) and the compound of Example 173B (Fraction II (−)).
Example 173A
Synthesis of (+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 173A was produced as described in Example 173. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.77-7.71 (m, 2H), 7.69-7.67 (m, 1H), 7.66 (s, 1H), 7.45-7.41 (m, 1H), 7.36-7.34 (m, 1H), 7.29-7.27 (m, 1H), 7.09 (s, 1H), 5.30-5.28 (m, 1H), 4.36-4.23 (m, 2H), 3.19 (s, 3H), 2.26 (s, 3H); Mass (ESI): 519.1 [M+1]; LCMS: 519.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.60 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.83 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.6% RT=13.38 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +115.79 (c=0.25, CH2Cl2).
Example 173B
Synthesis of (−)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 173B was produced as described in Example 173. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.01-7.99 (m, 1H), 7.77-7.71 (m, 2H), 7.69-7.67 (m, 1H), 7.66 (s, 1H), 7.45-7.41 (m, 1H), 7.36-7.34 (m, 1H), 7.29-7.27 (m, 1H), 7.09 (s, 1H), 5.30-5.28 (m, 1H), 4.36-4.23 (m, 2H), 3.19 (s, 3H), 2.26 (s, 3H); Mass (ESI): 519.1 [M+1]; LCMS: 519 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.60 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.83 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=14.47 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −126.38 (c=0.25, CH2Cl2).
Example 174
Synthesis of 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (13 mg, 0.01 mmol) and Xantphos (24 mg, 0.04 mmol) in 1, 4-dioxane (0.3 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(2, 5-dichloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.27 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (112 mg, 0.55 mmol) and cesium carbonate (126 mg, 0.38 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine (80 mg, 54%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.68 (s, 1H), 7.60 (s, 1H), 7.26-7.20 (m, 2H), 7.19 (d, 1H), 7.01 (s, 1H), 6.97-6.95 (m, 1H), 5.00-4.98 (m, 1H), 4.27-4.19 (m, 2H), 3.90 (s, 3H), 3.85 (s, 3H), 3.15 (s, 3H), 2.21 (s, 3H); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 174 was separated using a Chiralpak AD-H column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30) as mobile phase) to provide the compound of Example 174A (Fraction I (−)) and the compound of Example 174B (Fraction II (+)).
Example 174A
Synthesis of (−)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 174A was produced as described in Example 174. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.68 (s, 1H), 7.60 (s, 1H), 7.26-7.20 (m, 2H), 7.19 (d, 1H), 7.01 (s, 1H), 6.97-6.95 (m, 1H), 5.00-4.98 (m, 1H), 4.27-4.19 (m, 2H), 3.90 (s, 3H), 3.85 (s, 3H), 3.15 (s, 3H), 2.21 (s, 3H); Mass (ESI): 527.1 [M+1]; LCMS: 527.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.51 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: 100.0% RT=13.35 min (CHIRALPAK-AD-H (250×20 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −201.40 (c=0.25, CH2Cl2).
Example 174B
Synthesis of (+)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 174B was produced as described in Example 174. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.68 (s, 1H), 7.60 (s, 1H), 7.26-7.20 (m, 2H), 7.19 (d, 1H), 7.01 (s, 1H), 6.97-6.95 (m, 1H), 5.00-4.98 (m, 1H), 4.27-4.19 (m, 2H), 3.90 (s, 3H), 3.85 (s, 3H), 3.15 (s, 3H), 2.21 (s, 3H); Mass (ESI): 527.1 [M+1]; LCMS: 527.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.76 min. ACN: 0.025% TFA (Aq); 0.50 mL/min; Chiral HPLC: 98.0% RT=16.51 min (CHIRALPAK-AD-H (250×20 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +119.71 (c=0.25, CH2Cl2).
Example 175
Synthesis of 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(5-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere were added cesium carbonate (200 mg, 0.60 mmol) followed by 2-bromo-1-(5-methoxy-2-methylphenyl) ethan-1-one (82 mg, 0.33 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(5-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (130 mg, crude) as a pale brown solid. LCMS: 489.6 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.6).
Synthesis of 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a stirred solution of 1-(5-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (140 mg, 0.28 mmol) in 1, 2-dichloroethane (1.5 mL) under an argon atmosphere were added trifluoroacetic acid (0.02 mL, 0.28 mmol) followed by sodium triacetoxyborohydride (127 mg, 0.60 mmol) at room temperature. The reaction mixture was stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (18 mg, 13%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.76 (s, 1H), 7.65 (s, 1H), 7.54 (s, 1H), 7.23-7.20 (m, 1H), 7.19-7.12 (m, 2H), 6.93 (s, 1H), 6.79 (d, 1H), 6.51 (s, 1H), 4.93-4.90 (m, 1H), 4.23-4.20 (m, 1H), 4.11-4.09 (m, 1H), 3.83 (s, 3H), 3.65 (s, 3H), 3.10 (s, 3H), 2.31 (s, 3H), 2.20 (s, 3H); Mass (ESI): 473 [M+1]; LCMS: 473.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% TFA (Aq); 0.50 mL/min TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 175 was separated using a Chiralpak-IC column (250×20 mm, 5 μm) (25 mg loading; 0.1% DEA in n-hexane; EtOH:MeOH (50:50) (A:B; 70:30); 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 75:25) as mobile phase) to provide the compound of Example 175A (Fraction I (+)) and the compound of Example 175B (Fraction II (−)).
Example 175A
Synthesis of (+)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 175A was produced as described in Example 175. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.64 (s, 1H), 7.59 (s, 1H), 7.26-7.21 (m, 1H), 7.20-7.14 (m, 2H), 6.97-6.95 (m, 1H), 6.81-6.79 (m, 1H), 6.51 (d, 1H), 4.95 (t, 1H), 4.23-4.21 (m, 1H), 4.12-4.10 (m, 1H), 3.84 (s, 3H), 3.69 (s, 3H), 3.10 (s, 3H), 2.31 (s, 3H), 2.21 (s, 3H); Mass (ESI): 473.1 [M+1]; LCMS: 473.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 100% RT=17.08 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00:199.98 (c=0.25, CH2Cl2).
Example 175B
Synthesis of (−)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 175B was produced as described in Example 175. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.64 (s, 1H), 7.59 (s, 1H), 7.26-7.21 (m, 1H), 7.20-7.14 (m, 2H), 6.97-6.95 (m, 1H), 6.81-6.79 (m, 1H), 6.51 (d, 1H), 4.95 (t, 1H), 4.23-4.21 (m, 1H), 4.12-4.10 (m, 1H), 3.84 (s, 3H), 3.69 (s, 3H), 3.10 (s, 3H), 2.31 (s, 3H), 2.21 (s, 3H); Mass (ESI): 473.2 [M+1]; LCMS: 473.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 99.8% RT=21.72 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: −203.36 (c=0.25, CH2Cl2).
Example 176
Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (24 mg, 0.02 mmol) and Xantphos (46 mg, 0.07 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (120 mg, 0.52 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (213 mg, 1.04 mmol) and cesium carbonate (240 mg, 0.73 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the staring material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: EtOAc to afford (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (60 mg, 29%) as a yellow solid. 1H-NMR (CD3OD, 400 MHz): δ 7.75-7.73 (m, 1H), 7.69 (s, 1H), 7.50 (s, 1H), 7.20-7.15 (m, 2H), 6.97 (s, 1H), 4.30-4.28 (m, 1H), 3.90-3.84 (m, 1H), 3.83 (s, 3H), 3.70-3.67 (m, 1H), 3.60-3.50 (m, 2H), 3.40 (s, 3H), 3.30 (s, 3H), 2.21 (s, 3H); Mass (ESI): 397.1 [M+1]; LCMS: 397.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.97 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.35 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.1% RT=14.38 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −17.56 (c=0.25, CH2Cl2); TLC: 5% MeOH/EtOAc (Rf: 0.3).
Example 177
Synthesis of (R)-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol




Synthesis of (R)-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
To a dry vial was added a suspension of Pd2(dba)3 (25 mg, 0.02 mmol) and Xantphos (48 mg, 0.08 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (120 mg, 0.55 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (227 mg, 1.11 mmol) and cesium carbonate (254 mg, 0.78 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the reaction (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: EtOAc to afford (R)-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol (62 mg, 29%) as a pale yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.05 (s, 1H), 7.85 (s, 1H), 7.60 (s, 1H), 7.57 (s, 1H), 7.29 (d, 1H), 7.13 (d, 1H), 6.99 (s, 1H), 5.08 (t, 1H), 4.30-4.27 (m, 1H), 3.85-3.80 (m, 1H), 3.77 (s, 3H), 3.62-3.59 (m, 1H), 3.51-3.42 (m, 2H), 3.19 (s, 3H), 2.11 (s, 3H); Mass (ESI): 383.4 [M+1]; LCMS: 383.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min 5 mM Aq NH4OAc: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.18 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.8% RT=19.61 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −7.15 (c=0.25, CH2Cl2); TLC: 5% MeOH/EtOAc (Rf: 0.3).
Example 178
Synthesis of 7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (22 mg, 0.02 mmol) and Xantphos (42 mg, 0.07 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (180 mg, 0.49 mmol), 1-(2-methoxypyridin-4-yl) piperidin-4-amine hydrochloride (200 mg, 0.98 mmol) and cesium carbonate (225 mg, 0.69 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc: CH2Cl2 to afford 7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (170 mg, 58%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 7.82-7.80 (m, 1H), 7.78 (s, 1H), 7.70 (d, 2H), 7.28-7.17 (m, 3H), 6.99 (s, 1H), 5.10-5.08 (m, 1H), 4.28 (d, 1H), 4.13 (d, 1H), 3.85 (s, 3H), 3.12 (s, 3H), 2.22 (s, 3H); LCMS: 533.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.58 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 (50×2.1 mm, 1.7 μm); RT 1.92 min. ACN: 0.025% Aq TFA; 0.50 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 178 was separated using a Chiralpak ODH column (250×4.6 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 90:10) as mobile phase) to provide the compound of Example 178A (Fraction I (+)) and the compound of Example 178B (Fraction II (−)).
Example 178A
Synthesis of (+)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 178A was produced as described in Example 178. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.83-7.80 (m, 1H), 7.76 (s, 1H), 7.68 (d, 2H), 7.26-7.15 (m, 3H), 6.95 (s, 1H), 5.09-5.07 (m, 1H), 4.28 (d, 1H), 4.10 (d, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 533.5 [M+1]; LCMS: 533.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.33 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.83 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=12.84 min (CHIRALPAK-ODH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +78.56 (c=0.25, CH2Cl2).
Example 178B
Synthesis of (−)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 178B was produced as described in Example 178. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.83-7.80 (m, 1H), 7.76 (s, 1H), 7.68 (d, 2H), 7.26-7.15 (m, 3H), 6.95 (s, 1H), 5.09-5.07 (m, 1H), 4.28 (d, 1H), 4.10 (d, 1H), 3.85 (s, 3H), 3.10 (s, 3H), 2.21 (s, 3H); Mass (ESI): 533.5 [M+1]; LCMS: 533.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.33 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.84 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.6% RT=15.97 min (CHIRALPAK-ODH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −85.68 (c=0.25, CH2Cl2).
Example 179
Synthesis of 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (2.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (343 mg, 1.68 mmol) and cesium carbonate (384 mg, 1.17 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 46%) as an off-white solid. LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.32 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 179 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (80:20); (A:B: 75:25) as mobile phase) to provide the compound of Example 179A (Fraction I (−)) and the compound of Example 179B (Fraction II (+)).
Example 179A
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 179A was produced as described in Example 179. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.97 (m, 1H), 7.74 (s, 1H), 7.66 (s, 1H), 7.64 (s, 1H), 7.01 (br s, 1H), 6.95-6.81 (m, 3H), 4.80-4.78 (m, 1H), 4.25-4.22 (m, 2H), 3.96 (s, 3H), 3.19 (s, 3H), 2.22 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.27 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.0% RT=8.35 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −131.95 (c=0.25, CH2Cl2).
Example 179B
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 179B was produced as described in Example 179. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.97 (m, 1H), 7.74 (s, 1H), 7.66 (s, 1H), 7.64 (s, 1H), 7.01 (br s, 1H), 6.95-6.81 (m, 3H), 4.80-4.78 (m, 1H), 4.25-4.22 (m, 2H), 3.96 (s, 3H), 3.19 (s, 3H), 2.22 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.7% RT=9.65 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +124.14 (c=0.25, CH2Cl2).
Example 180
Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (33 mg, 0.03 mmol) and Xantphos (63 mg, 0.11 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.72 mmol), 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (297 mg, 1.45 mmol) and cesium carbonate (331 mg, 1.01 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the reaction (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with MeOH: ether (1:1, 2×10 mL) to afford N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (280 mg, 87%) as an off-white solid. LCMS: 444 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.31 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 180 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 180A (Fraction I (−)) and the compound of Example 180B (Fraction II (+)).
Example 180A
Synthesis of (−)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 180A was produced as described in Example 180. Analytical data for product for Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.99 (m, 1H), 7.72 (s, 1H), 7.65-7.60 (m, 2H), 7.28-7.12 (m, 3H), 7.08-6.97 (m, 2H), 5.04-5.01 (m, 1H), 4.26-4.21 (m, 1H), 4.17-4.11 (m, 1H), 3.96 (s, 3H), 3.10 (s, 3H), 2.41 (s, 3H), 2.22 (s, 3H); Mass (ESI): 444.5 [M+1]; LCMS: 444.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.30 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.64 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.5% RT=7.38 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1 DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −155.36 (c=0.25, CH2Cl2).
Example 180B
Synthesis of (+)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 180B was produced as described in Example 180. Analytical data for product for Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.00-7.99 (m, 1H), 7.72 (s, 1H), 7.65-7.60 (m, 2H), 7.28-7.12 (m, 3H), 7.08-6.97 (m, 2H), 5.04-5.01 (m, 1H), 4.26-4.21 (m, 1H), 4.17-4.11 (m, 1H), 3.96 (s, 3H), 3.10 (s, 3H), 2.41 (s, 3H), 2.22 (s, 3H); Mass (ESI): 444.4 [M+1]; LCMS: 444 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.30 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 95.7% RT=10.13 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +143.77 (c=0.25, CH2Cl2).
Example 181
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (69 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (194 mg, 0.95 mmol) and cesium carbonate (360 mg, 1.11 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-5% MeOH: CH2Cl2 to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 26%) as an off-white solid. LCMS 484 (M+1); (column; X-select CSH C-18 50×3.0 mm, 3.5 μm); RT 2.38 min. ACN: 0.025% Aq TFA; 0.8 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 181 was separated using a Chiralpak ADH (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 181A (Fraction I (−)) and the compound of Example 181B (Fraction II (+)).
Example 181A
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 181A was produced as described in Example 181. Analytical data for product for Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30 (d, 2H), 8.11 (s, 1H), 7.64 (s, 1H), 7.40 (s, 1H), 7.30-7.25 (m, 1H), 7.05-7.00 (m, 1H), 5.06-5.03 (m, 1H), 4.25-4.21 (m, 2H), 3.98 (s, 3H), 3.20 (s, 3H), 2.22 (s, 3H); Mass (ESI): 484.3 [M+1]; LCMS: 484.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.11 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=12.89 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −154.99 (c=0.25, CH2Cl2).
Example 181B
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 181B was produced as described in Example 181. Analytical data for product for Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30 (d, 2H), 8.11 (s, 1H), 7.64 (s, 1H), 7.40 (s, 1H), 7.30-7.25 (m, 1H), 7.05-7.00 (m, 1H), 5.06-5.03 (m, 1H), 4.25-4.21 (m, 2H), 3.98 (s, 3H), 3.20 (s, 3H), 2.22 (s, 3H); Mass (ESI): 484.4 [M+1]; LCMS: 484.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.10 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.0% RT=15.44 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +141.95 (c=0.25, CH2Cl2).
Example 182
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (55 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.63 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (259 mg, 1.26 mmol) and cesium carbonate (289 mg, 0.88 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with CH3CN: MeOH (1:1, 2×10 mL) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (110 mg, 35%) as an off-white solid. LCMS: 484 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.44 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 182 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 182A (Fraction I (+)) and the compound of Example 182B (Fraction II (−)).
Example 182A
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 182A was produced as described in Example 182. Analytical data for product for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.29 (m, 2H), 8.10 (s, 1H), 7.62 (s, 1H), 7.39 (s, 1H), 7.03 (t, 2H), 4.75-4.73 (m, 1H), 4.21-4.19 (m, 2H), 3.97 (s, 3H), 3.18 (s, 3H), 2.21 (s, 3H); Mass (ESI): 484.1 [M+1]; LCMS: 484.0 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.2% RT=15.03 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +126.12 (c=0.25, CH2Cl2).
Example 182B
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 182B was produced as described in Example 182. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.29 (m, 2H), 8.10 (s, 1H), 7.62 (s, 1H), 7.39 (s, 1H), 7.03 (t, 2H), 4.75-4.73 (m, 1H), 4.21-4.19 (m, 2H), 3.97 (s, 3H), 3.18 (s, 3H), 2.21 (s, 3H); Mass (ESI): 484 [M+1]; LCMS: 484.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 95.2% RT=16.78 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −131.61 (c=0.25, CH2Cl2).
Example 183
Synthesis of 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (35 mg, 0.04 mmol) and Xantphos (67 mg, 0.11 mmol) in 1, 4-dioxane (1.15 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.77 mmol), 6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-amine (334 mg, 1.54 mmol) and cesium carbonate (352 mg, 1.08 mmol) in 1, 4-dioxane (1.15 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 27%) as an off-white solid. LCMS: 478.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.64 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.94 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 183 was separated using a Chiralpak IC column (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 85:15) as mobile phase) to provide the compound of Example 183A (Fraction I (+)) and the compound of Example 183B (Fraction II (−)).
Example 183A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 183A was produced as described in Example 183. Analytical data for product for Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.29 (s, 1H), 8.63 (d, 1H), 8.51 (d, 1H), 8.02 (d, 1H), 7.90 (d, 1H), 7.72 (s, 1H), 7.24 (t, 1H), 7.00-6.93 (m, 2H), 4.92-4.90 (m, 1H), 4.30-4.20 (m, 2H), 4.00 (s, 3H), 3.11 (s, 3H), 2.61 (s, 3H); Mass (ESI): 478.1 [M+1]; LCMS: 478.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.65 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.95 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.7% RT=17.76 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +0.25 (c=0.25, CH2Cl2).
Example 183B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 183B was produced as described in Example 183. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.29 (s, 1H), 8.63 (d, 1H), 8.51 (d, 1H), 8.02 (d, 1H), 7.90 (d, 1H), 7.72 (s, 1H), 7.24 (t, 1H), 7.00-6.93 (m, 2H), 4.92-4.90 (m, 1H), 4.30-4.20 (m, 2H), 4.00 (s, 3H), 3.11 (s, 3H), 2.61 (s, 3H); Mass (ESI): 478.1 [M+1]; LCMS: 478.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 nm); RT 2.64 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.95 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=20.77 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −0.25 (c=0.25, CH2Cl2).
Example 184
Synthesis of 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (35 mg, 0.04 mmol) and Xantphos (67 mg, 0.11 mmol) in 1, 4-dioxane (1.15 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.77 mmol), 6-methoxy-5-(2-methylpyrimidin-4-yl) pyridin-2-amine (316 mg, 1.54 mmol) and cesium carbonate (352 mg, 1.08 mmol) in 1, 4-dioxane (1.15 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 33%) as an off-white solid. LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.83 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 2.06 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 184 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 184A (Fraction I (−)) and the compound of Example 184B (Fraction II (+)).
Example 184A
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 184A was produced as described in Example 184. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 8.70 (s, 1H), 8.00 (s, 1H), 7.90-7.84 (m, 2H), 7.83 (s, 1H), 7.70 (s, 1H), 7.25 (t, 1H), 7.00-6.94 (m, 2H), 4.90-4.88 (m, 1H), 4.30-4.17 (m, 2H), 3.95 (s, 3H), 3.83 (s, 3H), 3.10 (s, 3H); Mass (ESI): 466.1 [M+1]; LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.81 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.04 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=11.54 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −146.43 (c=0.25, CH2Cl2).
Example 184B
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 184B was produced as described in Example 184. Analytical data for product Fraction II (+): 1H-NMR (DMSO-d6, 400 MHz): δ 8.70 (s, 1H), 8.00 (s, 1H), 7.90-7.84 (m, 2H), 7.83 (s, 1H), 7.70 (s, 1H), 7.25 (t, 1H), 7.00-6.94 (m, 2H), 4.90-4.88 (m, 1H), 4.30-4.17 (m, 2H), 3.95 (s, 3H), 3.83 (s, 3H), 3.10 (s, 3H); Mass (ESI): 466.1 [M+1]; LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.83 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.04 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=15.02 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +153.26 (c=0.25, CH2Cl2).
Example 185
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (57 mg, 0.06 mmol) and Xantphos (108 mg, 0.01 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.12 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (512 mg, 0.25 mmol) and cesium carbonate (571 mg, 1.75 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the staring material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (250 mg, 54%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.11-8.10 (m, 2H), 8.00 (s, 1H), 7.52 (s, 1H), 7.37-7.30 (m, 4H), 7.21 (d, 2H), 6.21 (s, 1H), 4.58-4.56 (m, 1H), 4.29-4.15 (m, 2H), 3.95 (s, 3H), 2.90 (s, 3H), 2.25 (s, 3H); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 185 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (40:60); (A:B: 80:20) as mobile phase) to provide the compound of Example 185A (Fraction I (+)) and the compound of Example 185B (Fraction II (−)).
Example 185A
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 185B was produced as described in Example 185. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.29-8.24 (m, 2H), 8.11 (s, 1H), 7.51 (s, 1H), 7.39 (s, 1H), 4.01-4.00 (m, 2H), 3.97 (s, 3H), 3.68-3.64 (m, 1H), 3.20 (s, 3H), 2.32 (s, 3H), 1.31 (d, 3H); Mass (ESI): 368.3 [M+1]; LCMS: 368.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.94 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=13.95 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (60:40) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +22.25 (c=0.25, CH2Cl2).
Example 185B
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 185B was produced as described in Example 185. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.29-8.24 (m, 2H), 8.11 (s, 1H), 7.51 (s, 1H), 7.39 (s, 1H), 4.01-4.00 (m, 2H), 3.97 (s, 3H), 3.68-3.64 (m, 1H), 3.20 (s, 3H), 2.32 (s, 3H), 1.31 (d, 3H); Mass (ESI): 368.3 [M+1]; LCMS: 368 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.95 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.29 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=16.03 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (60:40) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −11.90 (c=0.25, CH2Cl2).
Example 186
Synthesis of 7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (1.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(2, 4-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (206 mg, 1.01 mmol) and cesium carbonate (382 mg, 1.17 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-5% MeOH: CH2Cl2 to obtain 100 and further purified by preparative HPLC which was further purified by preparative HPLC to afford (Ascentis C-18 (250×21.2 mm, 5 μm (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/30, 25/10, 30/10, 35/10)) which was further purified by chiral preparative HPLC to afford 7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (60 mg, 15%) as an off-white solid. UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 186 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 186A (Fraction I (+)) and the compound of Example 186B (Fraction II (−)).
Example 186A
Synthesis of (+)-7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 186A was produced as described in Example 186. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31-8.30 (m, 2H), 8.11 (s, 1H), 7.61 (s, 1H), 7.40 (s, 1H), 7.15-7.10 (m, 1H), 7.09-7.04 (m, 1H), 6.99-6.94 (m, 1H), 5.06-5.04 (m, 1H), 4.27-4.25 (m, 2H), 3.95 (s, 3H), 3.19 (s, 3H), 2.22 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.33 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 96.4% RT=17.96 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +149.47 (c=0.25, CH2Cl2).
Example 186B
Synthesis of (−)-7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 186B was produced as described in Example 186. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31-8.30 (m, 2H), 8.11 (s, 1H), 7.61 (s, 1H), 7.40 (s, 1H), 7.15-7.10 (m, 1H), 7.09-7.04 (m, 1H), 6.99-6.94 (m, 1H), 5.06-5.04 (m, 1H), 4.27-4.25 (m, 2H), 3.95 (s, 3H), 3.19 (s, 3H), 2.22 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.36 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.67 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.1% RT=20.26 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −146.12 (c=0.25, CH2Cl2).
Example 187
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (43 mg, 0.04 mmol) and Xantphos (82 mg, 0.14 mmol) in 1, 4-dioxane (2.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(4-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (240 mg, 0.94 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (212 mg, 1.04 mmol) and cesium carbonate (431 mg, 1.31 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to obtain 300 and further purified by preparative HPLC to afford (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/20, 30/10, 35/10)) as mobile phase) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (98 mg, 26%) as an off-white solid. UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 2.15 min. ACN: 0.05% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 187 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane; EtOH:MeOH (50:50) (A:B; 70:30) as mobile phase) to provide the compound of Example 187A (Fraction I (+)) and the compound of Example 187B (Fraction II (−)).
Example 187A
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 187A was produced as described in Example 187. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.71 (s, 1H), 7.65-7.61 (m, 2H), 7.22 (d, 1H), 7.19 (d, 1H), 6.99 (s, 1H), 4.58-4.51 (m, 1H), 4.39-4.31 (m, 1H), 4.07-4.00 (m, 1H), 3.88 (s, 3H), 3.37 (s, 3H), 2.20 (s, 3H); Mass (ESI): 421.4 [M+1]; LCMS: 421.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.15 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.50 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=7.26 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +73.64 (c=0.25, CH2Cl2).
Example 187B
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 187B was produced as described in Example 187. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.71 (s, 1H), 7.65-7.61 (m, 2H), 7.22 (d, 1H), 7.19 (d, 1H), 6.99 (s, 1H), 4.58-4.51 (m, 1H), 4.39-4.31 (m, 1H), 4.07-4.00 (m, 1H), 3.88 (s, 3H), 3.37 (s, 3H), 2.20 (s, 3H); Mass (ESI): 421.4 [M+1]; LCMS: 421 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.15 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.50 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=12.65 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]19.99: −77.87 (c=0.25, CH2Cl2).
Example 188
Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (68 mg, 0.11 mmol) in 1, 4-dioxane (1.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (178 mg, 0.87 mmol) and cesium carbonate (835 mg, 1.11 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to obtain 280 and further purified by preparative HPLC to afford (Ascentis C-18 (250×21.2 mm, 5 μm (50 mg loading; CH3CN: 5 mM NH4OAc (0.1/80, 2/70, 8/50, 16/20, 24/10, 35/10)) to afford N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (210 mg, 55%) as a pale yellow solid. LCMS: 484.1 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.37 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 188 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (18 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 188A (Fraction I (−)) and the compound of Example 188B (Fraction II (+)).
Example 188A
Synthesis of (−)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 188A was produced as described in Example 188. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.99-7.97 (m, 1H), 7.71 (s, 1H), 7.64-7.60 (m, 2H), 7.03-7.00 (m, 3H), 4.75-4.73 (m, 1H), 4.20 (s, 2H), 3.93 (s, 3H), 3.13 (s, 3H), 2.20 (s, 3H); Mass (ESI): 484.4 [M+1]; LCMS: 484.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.36 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.9% RT=13.12 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −106.08 (c=0.25, CH2Cl2).
Example 188B
Synthesis of (+)-N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 188B was produced as described in Example 188. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.99-7.97 (m, 1H), 7.71 (s, 1H), 7.64-7.60 (m, 2H), 7.03-7.00 (m, 3H), 4.75-4.73 (m, 1H), 4.20 (s, 2H), 3.93 (s, 3H), 3.13 (s, 3H), 2.20 (s, 3H); Mass (ESI): 484.4 [M+1]; LCMS: 484.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.35 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.2% RT=14.77 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +103.07 (c=0.25, CH2Cl2).
Example 189
Synthesis of 7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (31 mg, 0.03 mmol) and Xantphos (58 mg, 0.10 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.67 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (274 mg, 1.34 mmol) and cesium carbonate (307 mg, 0.94 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with CH2Cl2 (2 mL), n-pentane (2 mL) to afford 7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (90 mg, 29%) as an off-white solid. LCMS: 466.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.74 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.63 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 189 was separated using a Chiralpak IC column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (80:20); (A:B: 60:40) as mobile phase) to provide the compound of Example 189A (Fraction I (+)) and the compound of Example 189B (Fraction II (−)).
Example 189A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 189A was produced as described in Example 189. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30 (d, 2H), 8.10 (s, 1H), 7.61 (s, 1H), 7.35 (s, 1H), 6.92-6.81 (m, 3H), 4.80-4.78 (m, 1H), 4.22-4.20 (m, 2H), 3.97 (s, 3H), 3.18 (s, 3H), 2.22 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.29 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 10.40 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.7% RT=16.53 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +115.39 (c=0.25, CH2Cl2).
Example 189B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 189B was produced as described in Example 189. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.29 (m, 2H), 8.10 (s, 1H), 7.62 (s, 1H), 7.39 (s, 1H), 7.03 (t, 2H), 4.75-4.73 (m, 1H), 4.21-4.19 (m, 2H), 3.97 (s, 3H), 3.18 (s, 3H), 2.21 (s, 3H); Mass (ESI): 466.5 [M+1]; LCMS: 466.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.26 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 10.36 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 97.6% RT=18.45 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −113.07 (c=0.25, CH2Cl2).
Example 190
Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (57 mg, 0.06 mmol) and Xantphos (109 mg, 0.18 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.25 mmol), 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (512 mg, 2.51 mmol) and cesium carbonate (571 mg, 1.75 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 43%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.93 (d, 1H), 7.72 (s, 1H), 7.60 (d, 1H), 7.53 (br s, 1H), 7.00 (s, 1H), 4.06-3.97 (m, 2H), 3.93 (s, 3H), 3.69-3.64 (m, 1H), 3.32-3.30 (m, 1H), 3.19 (s, 3H), 2.22 (s, 3H), 1.30 (d, 3H); Mass (ESI): 368.4 [M+1]; LCMS: 368 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.06 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.29 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 191
Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (36 mg, 0.04 mmol) and Xantphos (68 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.79 mmol), 6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (323 mg, 1.58 mmol), cesium carbonate (361 mg, 1.11 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-5% MeOH: CH2Cl2 to afford N-(6-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 31%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.99 (d, 1H), 7.73 (s, 1H), 7.68-7.60 (m, 2H), 7.33-7.25 (m, 1H), 7.03-6.98 (m, 2H), 5.08-5.05 (m, 1H), 4.28-4.23 (m, 2H), 3.97 (s, 3H), 3.19 (s, 3H), 2.21 (s, 3H); Mass (ESI): 484.4 [M+1]; LCMS: 484.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.50 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 192
Synthesis of 6-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile




Synthesis of 6-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (2 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 6-amino-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile (185 mg, 0.93 mmol) and cesium carbonate (384 mg, 1.18 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-5% MeOH/CH2Cl2 to afford 6-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile (130 mg, 33%) as an off-white solid. LCMS (purity): 484 (M+1); (column; X-select CSH C-18 50×3.0 mm, 3.5 μm); RT 2.38 min. ACN: 0.025% Aq TFA; 0.8 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 192 was separated using a Chiralpak ADH column (250×4.6 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 192A (Fraction I (−)) and the compound of Example 192B (Fraction II (+)).
Example 192A
Synthesis of (−)-6-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile




The compound of Example 192A was produced as described in Example 192. Analytical data for Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 10.09 (s, 1H), 8.65 (d, 1H), 8.00 (d, 1H), 7.97 (s, 1H), 7.70 (s, 1H), 7.30 (s, 1H), 7.22 (t, 1H), 7.00-6.97 (m, 2H), 4.90 (s, 1H), 4.30-4.27 (m, 1H), 4.21-4.18 (m, 1H), 3.08 (s, 3H), 2.15 (s, 3H); Mass (ESI): 461.6 [M+1]; LCMS: 461 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.32 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 10.38 min. ACN: 5 mM Aq NH4OAc; 0.5 mL/min; Chiral HPLC: 98.6% RT=9.71 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 70 30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: −82.80 (c=0.25, CH2Cl2).
Example 192B
Synthesis of (+)-6-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl-1H-imidazol-1-yl) picolinonitrile




The compound of Example 192B was produced as described in Example 192. Analytical data for Fraction II (+): 1H-NMR (DMSO-d6, 400 MHz): δ 10.09 (s, 1H), 8.65 (d, 1H), 8.00 (d, 1H), 7.97 (s, 1H), 7.70 (s, 1H), 7.30 (s, 1H), 7.22 (t, 1H), 7.00-6.97 (m, 2H), 4.90 (s, 1H), 4.30-4.27 (m, 1H), 4.21-4.18 (m, 1H), 3.08 (s, 3H), 2.15 (s, 3H); Mass (ESI): 461.5 [M+1]; LCMS: 461 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.32 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 10.39 min. ACN: 5 mM Aq NH4OAc; 0.5 mL/min; Chiral HPLC: 99.4% RT=15.08 min (CHIRALPAK-IB (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 70 30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +87.53 (c=0.25, CH2Cl2).
Example 193
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (25 mg, 0.02 mmol) and Xantphos (47 mg, 0.08 mmol) in 1, 4-dioxane (3 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (210 mg, 0.83 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (187 mg, 0.91 mmol) and cesium carbonate (378 mg, 1.16 mmol) in 1, 4-dioxane (3 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (column (Ascentis C-18 (250×21.2 mm, 5 μm (75 mg loading; CH3CN: 0.05% TFA (0.1/90, 15/70, 25/20, 30/10, 35/10)) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 34%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.29-8.27 (m, 2H), 8.14 (s, 1H), 7.70 (s, 1H), 7.40 (s, 1H), 4.60-4.57 (m, 1H), 4.40-4.34 (m, 1H), 4.03-4.00 (m, 1H), 3.99 (s, 3H), 3.37 (s, 3H), 2.21 (s, 3H); LCMS: 422 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.36 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.53 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 193 was separated using a Chiralpak AD-H column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25 as mobile phase) to provide the compound of Example 193A (Fraction I (+)) and the compound of Example 193B (Fraction II (−)).
Example 193A
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 193A was produced as described in Example 193. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.29-8.27 (m, 2H), 8.12 (s, 1H), 7.67 (s, 1H), 7.40 (s, 1H), 4.59-4.51 (m, 1H), 4.40-4.33 (m, 1H), 4.05-4.00 (m, 1H), 3.98 (s, 3H), 3.38 (s, 3H), 2.23 (s, 3H); Mass (ESI): 422.3 [M+1]; LCMS: 422 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.22 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.55 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=10.97 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +67.31 (c=0.25, CH2Cl2).
Example 193B
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 193B was produced as described in Example 193. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.29-8.27 (m, 2H), 8.12 (s, 1H), 7.67 (s, 1H), 7.40-7.39 (m, 1H), 4.59-4.51 (m, 1H), 4.40-4.33 (m, 1H), 4.05-4.00 (m, 1H), 3.98 (s, 3H), 3.38 (s, 3H), 2.23 (s, 3H); Mass (ESI): 422.4 [M+1]; LCMS: 422 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.21 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.55 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=17.61 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −61.31 (c=0.25, CH2Cl2).
Example 194
Synthesis of 7, 8-dimethyl-N-(6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7, 8-dimethyl-N-(6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (58 mg, 0.05 mmol) and Xantphos (98 mg, 0.16 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (225 mg, 1.13 mmol), 6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (514 mg, 1.58 mmol) and cesium carbonate (515 mg, 1.58 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube, After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexane to afford 7, 8-dimethyl-N-(6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (300 mg, 79%) as an off-white solid. LCMS: 337.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.79 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 8.77 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 50% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 194 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (80:20); (A:B: 60:40) as mobile phase) to provide the compound of Example 194A (Fraction I (+)) and the compound of Example 194B (Fraction II (−)).
Example 194A
Synthesis of (+)-7, 8-dimethyl-N-(6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 194A was produced as described in Example 194. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.71 (s, 1H), 8.30 (s, 1H), 8.28 (d, 1H), 7.50-7.47 (m, 3H), 4.01-4.00 (m, 2H), 3.69-3.66 (m, 1H), 3.19 (s, 3H), 2.25 (s, 3H), 1.30 (d, 3H); Mass (ESI): 337.9 [M+1]; LCMS: 337.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.86 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 8.81 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.0% RT=9.18 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +5.55 (c=0.25, CH2Cl2).
Example 194B
Synthesis of (−)-7, 8-dimethyl-N-(6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 194B was produced as described in Example 194. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.71 (s, 1H), 8.30 (s, 1H), 8.28 (d, 1H), 7.50-7.47 (m, 3H), 4.01-4.00 (m, 2H), 3.69-3.66 (m, 1H), 3.19 (s, 3H), 2.25 (s, 3H), 1.30 (d, 3H); Mass (ESI): 337.9 [M+1]; LCMS: 337.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.88 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 8.80 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 97.7% RT=10.81 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −1.68 (c=0.25, CH2Cl2).
Example 195
Synthesis of N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (46 mg, 0.05 mmol) and Xantphos (87 mg, 0.15 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 1.00 mmol), 6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine (410 mg, 2.01 mmol) and cesium carbonate (458 mg, 1.40 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 1% MeOH/CH2Cl2 to afford N-(6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 35%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.95 (s, 1H), 7.84 (s, 3H), 7.50 (s, 1H), 4.05-4.01 (m, 2H), 4.00 (s, 3H), 3.91 (s, 3H), 3.72-3.67 (m, 1H), 3.22 (s, 3H), 1.32 (d, 3H); Mass (ESI): 368.4 [M+1]; LCMS: 368 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.43 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 1.0 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Example 196
Synthesis of N-(3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (55 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.63 mmol), 3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine (281 mg, 1.26 mmol) and cesium carbonate (290 mg, 0.88 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 1% MeOH/CH2Cl2 to afford N-(3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 56%) as a yellow solid. 1H-NMR (CD3OD, 400 MHz): δ 8.06 (s, 1H), 7.92 (s, 1H), 7.79 (d, 1H), 7.56 (s, 1H), 7.02 (t, 2H), 4.73-4.70 (m, 1H), 4.21 (s, 2H), 4.01 (s, 3H), 3.93 (s, 3H), 3.07 (s, 3H); Mass (ESI): 502.1 [M+1]; LCMS: 502.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.88 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7μ); RT 2.11 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Example 197
Synthesis of 7-(3, 5-difluorophenyl)-N-(3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (15 mg, 0.01 mmol) and Xantphos (29 mg, 0.05 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. Then 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.33 mmol), 3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-amine (149 mg, 0.67 mmol) and cesium carbonate (153 mg, 0.47 mmol) were added to the reaction mixture at room temperature. The reaction mixture was stirred at 140° C. for 2 h in a microwave. After consumption of the starting material (monitored by TLC), the reaction was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(3-fluoro-6-methoxy-5-(1-methyl-1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 12%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.06 (s, 1H), 7.92 (s, 1H), 7.78 (d, 1H), 7.55 (s, 1H), 6.95-6.89 (m, 1H), 6.85 (dd, 2H), 4.74 (t, 1H), 4.23 (d, 2H), 4.01 (s, 3H), 3.92 (s, 3H), 3.07 (s, 3H); Mass (ESI): 484 [M+1]; LCMS: 484 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.81 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.01 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Example 198
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (22 mg, 0.02 mmol) and Xantphos (43 mg, 0.07 mmol) in 1, 4-dioxane (0.9 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (180 mg, 0.49 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (188 mg, 0.98 mmol), cesium carbonate (225 mg, 0.69 mmol) in 1, 4-dioxane (0.9 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford 7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (110 mg, 43%) as an off-white solid. LCMS: 521.0 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.63 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18 (50×2.1 mm, 1.7 μm); RT 1.93 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 198 was separated using a Chiralpak IC column (250×4.6 mm: 5 μm; (50 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 198A (Fraction I (−)) and the compound of Example 198B (Fraction II (+)).
Example 198A
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 198A was produced as described in Example 198. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.50 (s, 1H), 8.10-8.00 (m, 2H), 7.78-7.75 (m, 2H), 7.55-7.50 (m, 1H), 7.40 (t, 1H), 7.38-7.28 (m, 1H), 7.14 (s, 1H), 5.03-5.00 (m, 1H), 4.29-4.23 (m, 1H), 4.12-4.08 (m, 1H), 3.00 (s, 3H), 2.15 (s, 3H); Mass (ESI): 521.4 [M+1]; LCMS: 521.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.16 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7μ); RT 1.91 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=11.57 min (CHIRALPAK-OJ-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −67.44 (c=0.25, CH2Cl2).
Example 198B
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 198B was produced as described in Example 198. Analytical data for product Fraction II (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.50 (s, 1H), 8.10-8.00 (m, 2H), 7.77-7.75 (m, 2H), 7.55-7.50 (m, 1H), 7.40 (t, 1H), 7.38-7.28 (m, 1H), 7.14 (s, 1H), 5.03-5.00 (m, 1H), 4.29-4.23 (m, 1H), 4.12-4.08 (m, 1H), 3.00 (s, 3H), 2.15 (s, 3H); Mass (ESI): 521.4 [M+1]; LCMS: 521.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.16 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7μ); RT 1.91 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.8% RT=17.65 min (CHIRALCEL-OJ-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +73.88 (c=0.25, CH2Cl2).
Example 199
Synthesis of 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 1-(4-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one
To a stirred solution of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-ol (100 mg, 0.30 mmol) in CH3CN (1 mL) under an argon atmosphere were added cesium carbonate (200 mg, 0.61 mmol) and 2-bromo-1-(4-methoxy-2-methylphenyl) ethan-1-one (90 mg, 0.33 mmol) at 0° C. The reaction mixture was stirred room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(4-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (120 mg, crude) as a pale yellow solid. LCMS: 489.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.49 min. 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6 h-pyrimido[5,4-b][1,4]oxazin-2-amine
To a stirred solution of 1-(4-methoxy-2-methylphenyl)-2-((2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-4-(methylamino) pyrimidin-5-yl) oxy) ethan-1-one (100 mg, 0.30 mmol) in 1, 2-dichloroethane (1 mL) under an argon atmosphere were added trifluoroacetic acid (30 mg, 0.26 mmol) and sodium triacetoxyborohydride (118 mg, 0.55 mmol) and stirred at room temperature for 16 h. After consumption of the starting material (monitored by TLC), the reaction mixture was quenched with a 1 N sodium hydroxide solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (13 mg, 10%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.69 (s, 1H), 7.55 (s, 1H), 7.25-7.15 (m, 2H), 6.99 (s, 1H), 6.93 (d, 1H), 6.81 (s, 1H), 6.79-6.75 (m, 1H), 4.93-4.90 (m, 1H), 4.22-4.20 (m, 1H), 4.10-4.08 (m, 1H), 3.85 (s, 3H), 3.79 (s, 3H), 3.09 (s, 3H), 2.40 (s, 3H), 2.22 (s, 3H); Mass (ESI): 473 [M+1]; LCMS: 473 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.34 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 199 was separated using a Chiralpak-IC column (250×20 mm, 5 μm) (20 mg loading; 0.1% DEA in n-hexane; EtOH:MeOH (50:50) (A:B; 70:30); 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 75:25) as mobile phase) to provide the compound of Example 199A (Fraction I (+)) and the compound of Example 199B (Fraction II (−)).
Example 199A
Synthesis of (+)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 199A was produced as described in Example 199. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.69 (s, 1H), 7.56 (s, 1H), 7.23-7.21 (m, 1H), 7.19-7.16 (m, 1H), 6.99 (s, 1H), 6.93 (d, 1H), 6.81 (s, 1H), 6.79-6.75 (m, 1H), 4.93-4.90 (m, 1H), 4.22-4.20 (m, 1H), 4.10-4.08 (m, 1H), 3.87 (s, 3H), 3.79 (s, 3H), 3.09 (s, 3H), 2.40 (s, 3H), 2.22 (s, 3H); Mass (ESI): 473.6 [M+1]; LCMS: 473.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 97.2% RT=15.65 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2: MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +177.95 (c=0.25, CH2Cl2).
Example 199B
Synthesis of (−)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 199B was produced as described in Example 199. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.69 (s, 1H), 7.56 (s, 1H), 7.23-7.21 (m, 1H), 7.19-7.16 (m, 1H), 6.99 (s, 1H), 6.93 (d, 1H), 6.81 (s, 1H), 6.79-6.75 (m, 1H), 4.93-4.90 (m, 1H), 4.22-4.20 (m, 1H), 4.10-4.08 (m, 1H), 3.87 (s, 3H), 3.79 (s, 3H), 3.09 (s, 3H), 2.40 (s, 3H), 2.22 (s, 3H); Mass (ESI): 473.6 [M+1]; LCMS: 473.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.80 ml/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 ml/min; Chiral HPLC: 99.0% RT=17.20 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2: MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −161.82 (c=0.25, CH2Cl2).
Example 200
Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (16 mg, 0.01 mmol) and Xantphos (30 mg, 0.05 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.34 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (140 mg, 0.68 mmol), cesium carbonate (335 mg, 1.02 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 0-5% MeOH: CH2Cl2 to afford (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (50 mg, 32%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.11 (s, 1H), 7.82 (s, 1H), 7.60 (s, 2H), 7.30-7.27 (m, 3H), 7.15-7.11 (m, 1H), 7.00-6.90 (m, 4H), 4.39 (d, 1H), 4.20-4.16 (m, 1H), 4.13-4.09 (m, 1H), 4.00-3.95 (m, 2H), 3.78 (s, 3H), 3.28 (s, 3H), 2.11 (s, 3H); Mass (ESI): 459.5 [M+1]; LCMS: 459 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=14.41 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +129.40 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 201
Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (12 mg, 0.01 mmol) and Xantphos (23 mg, 0.04 mmol) in 1, 4-dioxane (0.4 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 0.27 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (44 mg, 0.21 mmol) and cesium carbonate (125 mg, 0.38 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (43 mg, 27%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.10 (s, 1H), 7.85 (s, 1H), 7.61 (s, 2H), 7.31-7.29 (m, 3H), 7.16-7.14 (m, 1H), 7.00-6.95 (m, 4H), 4.40 (d, 1H), 4.20-4.15 (m, 1H), 4.13-4.10 (m, 1H), 4.00-3.95 (m, 2H), 3.78 (s, 3H), 3.30 (s, 3H), 2.13 (s, 3H); Mass (ESI): 459.5 [M+1]; LCMS: 459 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.42 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.8% RT=13.10 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −111.64 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 202
Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (34 mg, 0.04 mmol) and Xantphos (43 mg, 0.07 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline (150 mg, 0.75 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (336 mg, 0.15 mmol) and cesium carbonate (342 mg, 1.05 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 45%) as an off-white solid. LCMS: 387 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.57 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.2).
Racemic compound of Example 202 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: IPA (A:B: 75:25) as mobile phase) to provide the compound of Example 202A (Fraction I (−)) and the compound of Example 202B (Fraction II (+)).
Example 202A
Synthesis of (−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 202A was produced as described in Example 202. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.78 (s, 1H), 7.70 (s, 1H), 7.50 (s, 1H), 7.23 (s, 1H), 7.20 (s, 2H), 4.01-3.99 (m, 2H), 3.86 (s, 3H), 3.69-3.62 (m, 1H), 3.20 (s, 3H), 1.31 (d, 3H); Mass (ESI): 387.7 [M+1]; LCMS: 386.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.57 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7μ); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=15.50 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) IPA (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −1.56 (c=0.25, CH2Cl2).
Example 202B
Synthesis of (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 202B was produced as described in Example 202. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.78 (s, 1H), 7.70 (s, 1H), 7.50 (s, 1H), 7.23 (s, 1H), 7.20 (s, 2H), 4.01-3.99 (m, 2H), 3.86 (s, 3H), 3.69-3.62 (m, 1H), 3.20 (s, 3H), 1.31 (d, 3H); Mass (ESI): 387.7 [M+1]; LCMS: 387 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.57 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7μ); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=19.89 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) IPA (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.96: +3.69 (c=0.25, CH2Cl2).
Example 203
Synthesis of 5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




Synthesis of 5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (35 mg, 0.04 mmol) and Xantphos (67 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.77 mmol), 5-amino-2-(4-methyl-1H-imidazol-1-yl) benzonitrile (306 mg, 1.54 mmol), cesium carbonate (353 mg, 1.08 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/20, 30/10, 35/10)) to afford 5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile (110 mg, 31%) as an off-white solid. LCMS: 460 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 203 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (10 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example-203A (Fraction I (+)) and the compound of Example 203B (Fraction II (−)).
Example 203A
Synthesis of (+)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




The compound of Example 203A was produced as described in Example 203. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.43 (s, 1H), 7.98 (d, 1H), 7.87 (s, 1H), 7.67 (s, 1H), 7.46 (d, 1H), 7.14 (s, 1H), 6.92-6.90 (m, 1H), 6.89-6.85 (m, 2H), 4.79-.477 (m, 1H), 4.23 (d, 2H), 3.17 (s, 3H), 2.26 (d, 3H); Mass (ESI): 460.5 [M+1]; LCMS: 460.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.1% RT=13.01 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +103.32 (c=0.25, CH2Cl2).
Example 203B
Synthesis of (−)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




The compound of Example 203B was produced as described in Example 203. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.43 (s, 1H), 7.98 (d, 1H), 7.87 (s, 1H), 7.67 (s, 1H), 7.46 (d, 1H), 7.14 (s, 1H), 6.92-6.90 (m, 1H), 6.89-6.85 (m, 2H), 4.79-.477 (m, 1H), 4.23 (d, 2H), 3.17 (s, 3H), 2.26 (d, 3H); Mass (ESI): 460.5 [M+1]; LCMS: 460.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.70 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.1% RT=14.14 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −111.16 (c=0.25, CH2Cl2).
Example 204
Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline (375 mg, 1.68 mmol), cesium carbonate (383 mg, 1.17 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5-10% MeOH: CH2Cl2 to afford N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (170 mg, 41%) as an off-white solid. LCMS: 485 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.96 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 204 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 204A (Fraction I (−)) and the compound of Example 204B (Fraction II (+)).
Example 204A
Synthesis of (−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 204A was produced as described in Example 204. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.79-7.77 (m, 1H), 7.69 (s, 1H), 7.61 (s, 1H), 7.27-7.20 (m, 3H), 6.95-6.83 (m, 3H), 4.75 (t, 1H), 4.22 (d, 2H), 3.89 (s, 3H), 3.19 (s, 3H); Mass (ESI): 485.8 [M+1]; LCMS: 485 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.01 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.08 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=20.27 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −107.66 (c=0.25, CH2Cl2).
Example 204B
Synthesis of (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 204B was produced as described in Example 204. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.79-7.77 (m, 1H), 7.69 (s, 1H), 7.61 (s, 1H), 7.27-7.20 (m, 3H), 6.95-6.83 (m, 3H), 4.75 (t, 1H), 4.22 (d, 2H), 3.89 (s, 3H), 3.19 (s, 3H); Mass (ESI): 485.6 [M+1]; LCMS: 485 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.08 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.6% RT=28.28 min (CHIRALPAK-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +110.81 (c=0.25, CH2Cl2).
Example 205
Synthesis of 5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




Synthesis of 5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (57 mg, 0.06 mmol) and Xantphos (108 mg, 0.18 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.25 mmol), 5-amino-2-(4-methyl-1H-imidazol-1-yl) benzonitrile (173 mg, 0.87 mmol) and cesium carbonate (571 mg, 1.75 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile (140 mg, 31%) as an off-white solid. LCMS: 362 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.91 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min.
Racemic compound of Example 205 was separated using a Chiralpak OJ-H column (250×20 mm: 5 μm; (10 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 205A (Fraction I (+)) and the compound of Example 205B (Fraction II (−)).
Example 205A
Synthesis of (+)-5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




The compound of Example 205A was produced as described in Example 205. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.45 (s, 1H), 8.40 (s, 1H), 7.99 (d, 1H), 7.81 (s, 1H), 7.60 (s, 1H), 7.45 (d, 1H), 7.19 (s, 1H), 4.00-3.92 (m, 2H), 3.70-3.65 (m, 1H), 3.10 (s, 3H), 2.14 (s, 3H), 1.20 (d, 3H); Mass (ESI): 362.4 [M+1]; LCMS: 362 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.89 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.0% RT=15.57 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (25:75) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +19.02 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 205B
Synthesis of (−)-5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile




The compound of Example 205B was produced as described in Example 205. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.45 (s, 1H), 8.40 (s, 1H), 7.99 (d, 1H), 7.81 (s, 1H), 7.60 (s, 1H), 7.45 (d, 1H), 7.19 (s, 1H), 4.00-3.92 (m, 2H), 3.70-3.65 (m, 1H), 3.10 (s, 3H), 2.14 (s, 3H), 1.20 (d, 3H); Mass (ESI): 362.5 [M+1]; LCMS: 362 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.88 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=18.38 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (25:75) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −21.79 (c=0.25, CH2Cl2).
Example 206
Synthesis of 7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (72 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.83 mmol), 5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-amine (151 mg, 0.58 mmol) and cesium carbonate (382 mg, 1.17 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (78 mg, 18%) as an off-white solid. UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 2.21 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 206 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (80:20); (A:B: 75:25) as mobile phase) to provide the compound of Example 206A (Fraction I (+)) and the compound of Example 206B (Fraction II (−)).
Example 206A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 206A was produced as described in Example 206. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 8.40 (s, 1H), 8.32 (s, 1H), 8.31 (s, 1H), 8.11 (s, 1H), 7.65 (s, 1H), 6.94-6.83 (m, 3H), 4.80 (s, 1H), 4.24 (s, 2H), 4.00 (s, 3H), 3.19 (s, 3H); Mass (ESI): 520.4 [M+1]; LCMS: 520 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.12 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.21 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=16.29 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +99.40 (c=0.25, CH2Cl2).
Example 206B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 206B was produced as described in Example 206. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 8.40 (s, 1H), 8.32 (s, 1H), 8.31 (s, 1H), 8.11 (s, 1H), 7.65 (s, 1H), 6.94-6.83 (m, 3H), 4.80 (s, 1H), 4.24 (s, 2H), 4.00 (s, 3H), 3.19 (s, 3H); Mass (ESI): 520.4 [M+1]; LCMS: 520 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.12 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.21 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 96.4% RT=17.56 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −93.37 (c=0.25, CH2Cl2).
Example 207
Synthesis of 7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (71 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(5-methoxy-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.82 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (184 mg, 0.90 mmol), cesium carbonate (399 mg, 1.22 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (230 mg, 59%) as an off-white solid. LCMS: 474 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 207 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (10 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (80:20); (A:B: 75:25) as mobile phase) to provide the compound of Example 207A (Fraction I (+)) and the compound of Example 207B (Fraction II (−)).
Example 207A
Synthesis of (+)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 207A was produced as described in Example 207. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 2H), 8.13 (s, 1H), 7.61 (s, 1H), 7.39 (s, 1H), 7.17 (d, 1H), 6.81 (dd, 1H), 6.54-6.51 (m, 1H), 4.95 (t, 1H), 4.24 (dd, 1H), 4.13 (dd, 1H), 3.97 (s, 3H), 3.68 (s, 3H), 3.11 (s, 3H), 2.34 (s, 3H), 2.24 (s, 3H); Mass (ESI): 474.5 [M+1]; LCMS: 474 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 2.1×50 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.0% RT=13.19 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.97: +167.04 (c=0.25, CH2Cl2).
Example 207B
Synthesis of (−)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 207B was produced as described in Example 207. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31 (d, 2H), 8.13 (s, 1H), 7.61 (s, 1H), 7.39 (s, 1H), 7.17 (d, 1H), 6.81 (dd, 1H), 6.54-6.51 (m, 1H), 4.95 (t, 1H), 4.24 (dd, 1H), 4.13 (dd, 1H), 3.97 (s, 3H), 3.68 (s, 3H), 3.11 (s, 3H), 2.34 (s, 3H), 2.24 (s, 3H); Mass (ESI): 474.5 [M+1]; LCMS: 474 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 2.1×50 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.3% RT=14.78 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −179.53 (c=0.25, CH2Cl2).
Example 208
Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba) (35 mg, 0.04 mmol) and Xantphos (66 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(2-chloro-5-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.76 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (311 mg, 1.53 mmol), cesium carbonate (300 mg, 0.91 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/20, 30/10, 35/10)) to afford 7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 39%) as a yellow solid. UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.76 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 208 was separated using a Chiralpak IC column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 208A (Fraction I (+)) and the compound of Example 208B (Fraction II (−)).
Example 208A
Synthesis of (+)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 208A was produced as described in Example 208. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.40 (s, 1H), 8.36 (s, 1H), 8.31 (s, 1H), 8.03 (s, 1H), 7.69 (s, 1H), 7.48 (d, 1H), 7.38 (s, 1H), 6.99 (d, 1H), 6.50 (s, 1H), 5.10-5.08 (m, 1H), 4.24 (s, 2H), 3.89 (s, 3H), 3.69 (s, 3H), 3.11 (s, 3H), 2.15 (s, 3H); Mass (ESI): 494.6 [M+1]; LCMS: 494.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.51 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 2.1×50 mm, 1.7 μm); RT 1.76 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=20.27 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +157.47 (c=0.25, CH2Cl2).
Example 208B
Synthesis of (−)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 208B was produced as described in Example 208. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.40 (s, 1H), 8.36 (s, 1H), 8.31 (s, 1H), 8.03 (s, 1H), 7.69 (s, 1H), 7.48 (d, 1H), 7.38 (s, 1H), 6.99 (d, 1H), 6.50 (s, 1H), 5.10-5.08 (m, 1H), 4.24 (s, 2H), 3.89 (s, 3H), 3.69 (s, 3H), 3.11 (s, 3H), 2.15 (s, 3H); Mass (ESI): 494.7 [M+1]; LCMS: 494.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 2.1×50 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.7% RT=25.20 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1 DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −160.22 (c=0.25, CH2Cl2).
Example 209
Synthesis of 7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (35 mg, 0.04 mmol) and Xantphos (66 mg, 0.11 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(2-chloro-4-methoxyphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.76 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (172 mg, 0.84 mmol) and cesium carbonate (37 mg, 1.15 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (110 mg, 29%) as an off-white solid. LCMS: 494 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 209 was separated using a Chiralpak IC column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 209A (Fraction I (+)) and the compound of Example 209B (Fraction II (−)).
Example 209A
Synthesis of (+)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 209A was produced as described in Example 209. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.31-8.28 (m, 2H), 8.11 (s, 1H), 7.60 (s, 1H), 7.40 (s, 1H), 7.10 (s, 1H), 7.00 (d, 1H), 6.99 (d, 1H), 5.52-5.50 (m, 1H), 4.25-4.23 (m, 2H), 3.95 (s, 3H), 3.80 (s, 3H), 3.12 (s, 3H), 2.22 (s, 3H); Mass (ESI): 494.5 [M+1]; LCMS: 494 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.8% RT=21.64 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +205.77 (c=0.25, CH2Cl2).
Example 209B
Synthesis of (−)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 209B was produced as described in Example 209. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.31-8.28 (m, 2H), 8.11 (s, 1H), 7.60 (s, 1H), 7.40 (s, 1H), 7.10 (s, 1H), 7.00 (d, 1H), 6.99 (d, 1H), 5.52-5.50 (m, 1H), 4.25-4.23 (m, 2H), 3.95 (s, 3H), 3.80 (s, 3H), 3.12 (s, 3H), 2.22 (s, 3H); Mass (ESI): 494.7 [M+1]; LCMS: 494 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.52 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.5% RT=24.67 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −195.71 (c=0.25, CH2Cl2).
Example 210
Synthesis of N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (157 mg, 0.75 mmol) and cesium carbonate (383 mg, 1.17 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 12 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (130 mg, 33%) as an off-white solid. LCMS: 470 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.43 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 210 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 210A (Fraction I (+)) and the compound of Example 210B (Fraction II (−)).
Example 210A
Synthesis of (+)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 210A was produced as described in Example 210. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.73-8.71 (s, 1H), 8.65-8.63 (s, 1H), 7.96 (s, 1H), 7.66 (s, 1H), 7.26-7.24 (m, 1H), 6.96-6.83 (m, 3H), 4.79 (s, 1H), 4.24 (d, 2H), 3.17 (s, 3H), 2.26 (s, 3H); Mass (ESI): 470.5 [M+1]; LCMS: 470 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.47 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.75 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.2% RT=15.47 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +128.09 (c=0.25, CH2Cl2).
Example 110B
Synthesis of (−)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 210B was produced as described in Example 210. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.73-8.71 (s, 1H), 8.65-8.63 (s, 1H), 7.96 (s, 1H), 7.66 (s, 1H), 7.26-7.24 (m, 1H), 6.96-6.83 (m, 3H), 4.79 (s, 1H), 4.24 (d, 2H), 3.17 (s, 3H), 2.26 (s, 3H); Mass (ESI): 470.5 [M+1]; LCMS: 470.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.47 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.74 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.8% RT=17.30 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −121.64 (c=0.25, CH2Cl2).
Example 211
Synthesis of 1-(5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile




Synthesis of 1-(5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile
To a dry vial was added a suspension of Pd2(dba)3 (21 mg, 0.02 mmol) and Xantphos (40 mg, 0.07 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (138 mg, 0.46 mmol), 1-(5-amino-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile (200 mg, 0.92 mmol) and cesium carbonate (211 mg, 0.65 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered, concentrated in vacuo, and purified by column chromatography using 3% MeOH: CH2Cl2 to afford 1-(5-(((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile (180 mg, 81%) as an off-white solid. LCMS: 477 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 211 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (90:10); (A:B: 65:35) as mobile phase) to provide the compound of Example 211A (Fraction I (+)) and the compound of Example 211B (Fraction II (−)).
Example 211A
Synthesis of (+)-1-(5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile




The compound of Example 211A was produced as described in Example 211. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.43 (s, 1H), 8.41 (d, 1H), 8.38 (s, 1H), 8.32 (s, 1H), 7.66 (s, 1H), 6.93-6.83 (m, 3H), 4.79-4.77 (m, 1H), 4.24 (d, 2H), 4.00 (s, 3H), 3.19 (s, 3H); Mass (ESI): 477.6 [M+1]; LCMS: 477.1 (M+1); (column;
X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.93 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 2.01 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=11.02 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (90:10) (A:B: 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +135.82 (c=0.25, CH2Cl2).
Example 211B
Synthesis of (−)-1-(5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile




The compound of Example 211B was produced as described in Example 211. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.43 (s, 1H), 8.41 (d, 1H), 8.38 (s, 1H), 8.32 (s, 1H), 7.66 (s, 1H), 6.93-6.83 (m, 3H), 4.79-4.77 (m, 1H), 4.24 (d, 2H), 4.00 (s, 3H), 3.19 (s, 3H); Mass (ESI): 477.5 [M+1]; LCMS: 477.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 2.01 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=12.59 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (90:10) (A:B: 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −133.28 (c=0.25, CH2Cl2).
Example 212
Synthesis of 7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (42 mg, 0.04 mmol) and Xantphos (79 mg, 0.13 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 3-difluorocyclobutyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.90 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (369 mg, 1.81 mmol), cesium carbonate (890 mg, 2.72 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (160 mg, 37%) as a pale yellow solid. LCMS: 443.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.29 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.56 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% EtOAc:hexane (Rf: 0.3).
Racemic compound of Example 212 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 212A (Fraction I (−)) and the compound of Example 212B (Fraction II (+)).
Example 212A
Synthesis of (−)-7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 212A was produced as described in Example 212. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 1H), 7.63 (s, 1H), 7.51 (s, 1H), 7.20-7.12 (m, 2H), 6.94 (s, 1H), 4.17 (d, 1H), 3.90-3.86 (m, 1H), 3.84 (s, 3H), 3.60-3.58 (m, 1H), 3.30 (s, 3H), 2.70-2.60 (m, 3H), 2.50-2.40 (m, 2H), 2.21 (s, 3H); Mass (ESI): 443.1 [M+1]; LCMS: 443.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.25 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.56 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=10.07 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −17.13 (c=0.25, CH2Cl2).
Example 212B
Synthesis of (+)-7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 212B was produced as described in Example 212. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 1H), 7.63 (s, 1H), 7.51 (s, 1H), 7.20-7.12 (m, 2H), 6.94 (s, 1H), 4.17 (d, 1H), 3.90-3.86 (m, 1H), 3.84 (s, 3H), 3.60-3.58 (m, 1H), 3.30 (s, 3H), 2.70-2.60 (m, 3H), 2.50-2.40 (m, 2H), 2.21 (s, 3H); Mass (ESI): 443.1 [M+1]; LCMS: 443 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.25 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.56 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.8% RT=16.89 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B: 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +16.20 (c=0.25, CH2Cl2).
Example 213
Synthesis of 7, 8-dimethyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7, 8-dimethyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (53 mg, 0.06 mmol) and Xantphos (100 mg, 0.17 mmol) in 1, 4-dioxane (1.15 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 1.15 mmol), 4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) aniline (594 mg, 2.31 mmol), sodium tert-butoxide (155 mg, 1.61 mmol) in 1, 4-dioxane (1.15 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 100° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 5 mM NH4OAc (0.1/80, 2/80, 10/50, 20/20, 25/10, 35/10)) which was further purified by chiral preparative HPLC to afford 7, 8-dimethyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 38%) as an off-white solid. LCMS: 421 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.23 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.52 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 213 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 90:10) as mobile phase) to provide the compound of Example 213A (Fraction I (−)) and the compound of Example 213B (Fraction II (+)).
Example 213A
Synthesis of (−)-7, 8-dimethyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 213A was produced as described in Example 213. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.10 (s, 1H), 7.75 (s, 1H), 7.60 (d, 1H), 7.50 (s, 1H), 7.34 (d, 1H), 7.07 (s, 1H), 4.01-.99 (m, 2H), 3.67-3.61 (m, 1H), 3.12 (s, 3H), 2.25 (s, 3H), 1.30 (d, 3H); LCMS: 421.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.20 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C18, 50×2.1 mm, 1.7 μm); RT 1.52 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=20.61 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −7.50 (c=0.25, CH2Cl2).
Example 213B
Synthesis of (+)-7, 8-dimethyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 213B was produced as described in Example 213. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.10 (s, 1H), 7.75 (s, 1H), 7.60 (d, 1H), 7.50 (s, 1H), 7.34 (d, 1H), 7.07 (s, 1H), 4.01-.99 (m, 2H), 3.67-3.61 (m, 1H), 3.12 (s, 3H), 2.25 (s, 3H), 1.30 (d, 3H); LCMS: 421.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.19 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C18, 50×2.1 mm, 1.7 μm); RT 1.52 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=24.33 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 90:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +7.82 (c=0.25, CH2Cl2).
Example 214
Synthesis of N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (57 mg, 0.06 mmol) and Xantphos (108 mg, 0.18 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.25 mmol), 3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) aniline (308 mg, 1.38 mmol) and cesium carbonate (612 mg, 1.88 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 and further purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (50 mg loading; CH3CN: 5 mM NH4OAc (0.1/90, 15/70, 25/20, 30/10, 35/10)) to afford N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (110 mg, 23%) as an off-white solid. LCMS: 387 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.04 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.35 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 214 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (25:75); (A:B: 75:25) as mobile phase) to provide the compound of Example 214A (Fraction I (+)) and the compound of Example 214B (Fraction II (−)).
Example 214A
Synthesis of (+)-N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 214A was produced as described in Example 214. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.39-8.37 (m, 1H), 7.72 (d, 1H), 7.61 (s, 1H), 7.50 (s, 1H), 7.27 (d, 1H), 6.99 (s, 1H), 6.50 (t, 1H), 4.02-4.00 (m, 2H), 3.70-3.64 (m, 1H), 3.20 (s, 3H), 2.24 (s, 3H), 1.31 (s, 3H); Mass (ESI): 387.3 [M+1]; LCMS: 387 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.35 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.8% RT=16.05 min (CHIRALPAK-OJ-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (25:75) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +4.08 (c=0.25, CH2Cl2).
Example 214B
Synthesis of (−)-N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 214B was produced as described in Example 214. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.39-8.37 (m, 1H), 7.72 (d, 1H), 7.61 (s, 1H), 7.50 (s, 1H), 7.27 (d, 1H), 6.99 (s, 1H), 6.50 (t, 1H), 4.02-4.00 (m, 2H), 3.70-3.64 (m, 1H), 3.20 (s, 3H), 2.24 (s, 3H), 1.31 (s, 3H); Mass (ESI): 387.4 [M+1]; LCMS: 387 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.06 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.35 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.6% RT=13.68 min (CHIRALPAK-OJ-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (25:75) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −4.11 (c=0.25, CH2Cl2).
Example 215
Synthesis of 7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (30 mg, 0.03 mmol) and Xantphos (56 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(4-methoxy-2-methylphenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.65 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (267 mg, 1.30 mmol) and cesium carbonate (297 mg, 0.91 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (140 mg, 46%) as an off-white solid. LCMS: 474 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 215 was separated using a Chiralpak IC column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 60:40) as mobile phase) to provide the compound of Example 215A (Fraction I (+)) and the compound of Example 215B (Fraction II (−)).
Example 215A
Synthesis of (+)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 215A was produced as described in Example 215. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.27 (s, 2H), 8.10 (s, 1H), 7.59 (s, 1H), 7.39 (s, 1H), 6.92 (d, 1H), 6.82-6.80 (m, 1H), 6.73-6.70 (m, 1H), 4.91 (t, 1H), 4.22-4.19 (m, 1H), 4.10-4.07 (m, 1H), 3.96 (s, 3H), 3.78 (s, 3H), 3.08 (s, 3H), 2.39 (s, 3H), 2.22 (s, 3H); Mass (ESI): 474.5 [M+1]; LCMS: 474.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=13.23 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +196.28 (c=0.25, CH2Cl2).
Example 215B
Synthesis of (−)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 215B was produced as described in Example 215. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.27 (s, 2H), 8.10 (s, 1H), 7.59 (s, 1H), 7.39 (s, 1H), 6.92 (d, 1H), 6.82-6.80 (m, 1H), 6.73-6.70 (m, 1H), 4.91 (t, 1H), 4.22-4.19 (m, 1H), 4.10-4.07 (m, 1H), 3.96 (s, 3H), 3.78 (s, 3H), 3.08 (s, 3H), 2.39 (s, 3H), 2.22 (s, 3H); Mass (ESI): 474.5 [M+1]; LCMS: 474.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.68 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.7% RT=14.99 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −188.68 (c=0.25, CH2Cl2).
Example 216
Synthesis of 7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (76 mg, 0.12 mmol) in 1, 4-dioxane (3.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(4, 4-difluorocyclohexyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.82 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (167 mg, 0.82 mmol) and cesium carbonate (807 mg, 2.47 mmol) in 1, 4-dioxane (3.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 1-3% MeOH: CH2Cl2 and further purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (50 mg loading; CH3CN: 0.05% TFA water (0.1/95, 15/70, 25/30, 35/10)) to afford 7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (220 mg, 57%) as an off-white solid. LCMS: 471.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 216 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 216A (Fraction I (−)) and the compound of Example 216B (Fraction II (+)).
Example 216A
Synthesis of (−)-7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 216A was produced as described in Example 216. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.01 (s, 1H), 7.83-7.81 (m, 1H), 7.60 (s, 1H), 7.58 (s, 1H), 7.30 (d, 1H), 7.15 (d, 1H), 7.00 (s, 1H), 4.33 (d, 1H), 3.80-3.78 (m, 1H), 3.77 (s, 3H), 3.48-3.45 (m, 1H), 3.20 (s, 3H), 2.11 (s, 3H), 2.10-2.00 (m, 2H), 1.90-1.70 (m, 5H), 1.50-1.33 (m 2H); Mass (ESI): 471.8 [M+1]; LCMS: 471.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.36 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.65 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=13.72 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −74.28 (c=0.25, CH2Cl2).
Example 216B
Synthesis of (+)-7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 216B was produced as described in Example 216. Analytical data for product Fraction II (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.01 (s, 1H), 7.83-7.81 (m, 1H), 7.60 (s, 1H), 7.58 (s, 1H), 7.30 (d, 1H), 7.15 (d, 1H), 7.00 (s, 1H), 4.33 (d, 1H), 3.80-3.78 (m, 1H), 3.77 (s, 3H), 3.48-3.45 (m, 1H), 3.20 (s, 3H), 2.11 (s, 3H), 2.10-2.00 (m, 2H), 1.90-1.70 (m, 5H), 1.50-1.33 (m 2H); Mass (ESI): 471.8 [M+1]; LCMS: 471.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.37 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=19.61 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +77.07 (c=0.25, CH2Cl2).
Example 217
Synthesis of (S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (48 mg, 0.05 mmol) and Xantphos (91 mg, 0.15 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-7-(cyclopropylmethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.04 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (424 mg, 2.09 mmol), cesium carbonate (477 mg, 1.46 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford (S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (95 mg, 22%) as an off-white solid.
1H-NMR (CD3OD, 400 MHz): δ 7.74 (s, 1H), 7.68 (s, 1H), 7.48 (s, 1H), 7.19-7.17 (m, 1H), 7.15 (s, 1H), 6.97 (s, 1H), 4.38 (dd, 1H), 3.95 (dd, 1H), 3.85 (s, 3H), 3.59 (t, 1H), 3.24 (s, 3H), 2.23 (s, 3H), 1.73-1.65 (m, 1H), 1.57-1.48 (m, 1H), 0.80-0.73 (m, 1H), 0.55-0.40 (m, 2H), 0.20-0.08 (m, 2H); Mass (ESI): 407.4 [M+1]; LCMS: 407.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.31 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 10.84 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 96.5% RT=10.37 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +53.28 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 218
Synthesis of (S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine)
To a dry vial was added a suspension of Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (54 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-7-(cyclopropylmethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.62 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (256 mg, 1.25 mmol), cesium carbonate (286 mg, 0.87 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford (S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (60 mg, 23%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.27 (d, 2H), 8.12 (s, 1H), 7.51 (s, 1H), 7.38 (s, 1H), 4.39 (dd, 1H), 3.96 (s, 3H), 3.95-3.93 (m, 1H), 3.62-3.56 (m, 1H), 3.21 (s, 3H), 2.21 (s, 3H), 1.70-1.66 (m, 1H), 1.52-1.47 (m, 1H), 0.80-0.73 (m, 1H), 0.52-0.47 (m, 2H), 0.20-0.08 (m, 2H); Mass (ESI): 408.6 [M+1]; LCMS: 408.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.23 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.21 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.7% RT=7.83 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +61.34 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 219
Synthesis of 7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (42 mg, 0.04 mmol) and Xantphos (79 mg, 0.13 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 3-difluorocyclobutyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.90 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (370 mg, 1.81 mmol), cesium carbonate (890 mg, 2.72 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% EtOAc:hexane to afford 7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 37%) as an off-white solid. LCMS: 444.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.20 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% EtOAc:hexane (Rf: 0.3).
Racemic compound of Example 219 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (10 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 219A (Fraction I (+)) and the compound of Example 219B (Fraction II (−)).
Example 219A
Synthesis of (+)-7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 219A was produced as described in Example 219. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.25 (m, 2H), 8.12 (s, 1H), 7.57 (s, 1H), 7.39 (s, 1H), 4.19 (dd, 1H), 3.97 (s, 3H), 3.90 (dd, 1H), 3.61 (d, 1H), 3.29 (s, 3H), 2.79-2.60 (m, 3H), 2.57-2.40 (m, 2H), 2.25 (s, 3H); Mass (ESI): 444.5 [M+1]; LCMS: 444.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.22 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.48 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.5% RT=12.33 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +20.11 (c=0.25, CH2Cl2).
Example 219B
Synthesis of (−)-7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 219B was produced as described in Example 219. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.25 (m, 2H), 8.12 (s, 1H), 7.57 (s, 1H), 7.39 (s, 1H), 4.19 (dd, 1H), 3.97 (s, 3H), 3.90 (dd, 1H), 3.61 (d, 1H), 3.29 (s, 3H), 2.79-2.60 (m, 3H), 2.57-2.40 (m, 2H), 2.25 (s, 3H); Mass (ESI): 444.5 [M+1]; LCMS: 444 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.21 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.47 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.6% RT=13.34 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −14.78 (c=0.25, CH2Cl2).
Example 220
Synthesis of 7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (72 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (343 mg, 1.68 mmol) and cesium carbonate (383 mg, 1.17 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 46%) as an off-white solid. LCMS: 466 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.26 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB-C-18 150×4.6 mm, 5.0 μm); RT 10.40 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 220 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phase) to provide the compound of Example 220A (Fraction I (−)) and the compound of Example 220B (Fraction II (+)).
Example 220A
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 220A was produced as described in Example 220. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.30 (s, 1H), 8.25 (s, 1H), 8.00 (s, 1H), 7.70 (s, 1H), 7.68 (s, 1H), 7.25-7.20 (m, 1H), 7.04 (s, 1H), 6.99 (d, 2H), 4.92-4.90 (m, 1H), 4.32-4.30 (m, 1H), 4.22-4.19 (m, 1H), 3.88 (s, 3H), 3.13 (s, 3H), 2.12 (s, 3H); Mass (ESI): 466.5 [M+1]; LCMS: 466 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.27 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.7% RT=12.32 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −104.01 (c=0.25, CH2Cl2).
Example 220B
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 220B was produced as described in Example 220. Analytical data for product Fraction II (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.30 (s, 1H), 8.25 (s, 1H), 8.00 (s, 1H), 7.70 (s, 1H), 7.68 (s, 1H), 7.25-7.20 (m, 1H), 7.04 (s, 1H), 6.99 (d, 2H), 4.92-4.90 (m, 1H), 4.32-4.30 (m, 1H), 4.22-4.19 (m, 1H), 3.88 (s, 3H), 3.13 (s, 3H), 2.12 (s, 3H); Mass (ESI): 466.6 [M+1]; LCMS: 466 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.26 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.5% RT=16.22 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +88.78 (c=0.25, CH2Cl2).
Example 221
Synthesis of 7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (71 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(4, 4-difluorocyclohexyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.82 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (336 mg, 1.65 mmol) and cesium carbonate (376 mg, 1.15 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: EtOAc to afford 7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (32 mg, 12%) as an off-white solid. LCMS: 472.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.33 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 221 was separated using a Chiralpak IC column (250×20 mm: 5 μm; (100 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (80:20); (A:B: 60:40) as mobile phase) to provide the compound of Example 221A (Fraction I (+)) and the compound of Example 221B (Fraction II (−)).
Example 221A
Synthesis of (+)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 221A was produced as described in Example 221. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.30 (s, 1H), 8.32-8.30 (m, 2H), 8.01 (s, 1H), 7.60 (s, 1H), 7.35 (s, 1H), 4.39-4.33 (m, 1H), 3.88 (s, 3H), 3.78 (d, 1H), 3.50-3.47 (m, 1H), 3.20 (s, 3H), 2.12 (s, 3H), 2.07-1.93 (m, 2H), 1.90-1.70 (m, 5H), 1.50-1.30 (m, 2H); Mass (ESI): 472.5 [M+1]; LCMS: 472.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.32 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=16.56 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +64.86 (c=0.25, CH2Cl2).
Example 221B
Synthesis of (−)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 221B was produced as described in Example 221. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.30 (s, 1H), 8.32-8.30 (m, 2H), 8.01 (s, 1H), 7.60 (s, 1H), 7.35 (s, 1H), 4.39-4.33 (m, 1H), 3.88 (s, 3H), 3.78 (d, 1H), 3.50-3.47 (m, 1H), 3.20 (s, 3H), 2.12 (s, 3H), 2.07-1.93 (m, 2H), 1.90-1.70 (m, 5H), 1.50-1.30 (m, 2H); Mass (ESI): 472.5 [M+1]; LCMS: 472.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.32 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.8% RT=19.22 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −59.63 (c=0.25, CH2Cl2).
Example 222
Synthesis of N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (30 mg, 0.03 mmol) and Xantphos (60 mg, 0.10 mmol) in 1, 4-dioxane (1.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.67 mmol), 3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) aniline (300 mg, 1.30 mmol) and cesium carbonate (311 mg, 0.90 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 5 mM NH4OAc (0.1/90, 2/85, 15/70, 25/20, 30/10, 35/10)) to afford N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 46%) as an off-white solid. LCMS: 485.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.44 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 222 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane; EtOH (A:B; 60:40) as mobile phase) to provide the compound of Example 222A (Fraction I (+)) and the compound of Example 222B (Fraction II (−)).
Example 222A
Synthesis of (+)-N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 222A was produced as described in Example 222. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 500 MHz): δ 8.38 (s, 1H), 7.83 (d, 1H), 7.66 (d, 2H), 7.31 (d, 1H), 7.01 (s, 1H), 6.94 (t, 1H), 6.88 (d, 2H), 652 (t, 1H), 4.75 (br s, 1H), 4.25 (s, 2H), 3.18 (s, 3H), 2.27 (s, 3H); Mass (ESI): 485.5 [M+1]; LCMS: 485 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.71 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=13.08 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +118.80 (c=0.25, CH2Cl2).
Example 222B
Synthesis of (−)-N-(3-(difluoromethyl)-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 222B was produced as described in Example 222. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 500 MHz): δ 8.38 (s, 1H), 7.83 (d, 1H), 7.66 (d, 2H), 7.31 (d, 1H), 7.01 (s, 1H), 6.94 (t, 1H), 6.88 (d, 2H), 652 (t, 1H), 4.75 (br s, 1H), 4.25 (s, 2H), 3.18 (s, 3H), 2.27 (s, 3H); Mass (ESI): 485.4 [M+1]; LCMS: 485 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.73 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=29.06 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −121.32 (c=0.25, CH2Cl2).
Example 223
Synthesis of 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy)phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (30 mg, 0.03 mmol) and Xantphos (60 mg, 0.10 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.67 mmol), 4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) aniline (350 mg, 1.30 mmol) and cesium carbonate (310 mg, 0.90 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (70 mg loading; CH3CN: TFA (0.01/90, 15/70, 25/30, 30/10)) to afford 7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 43%) as an off-white solid. LCMS: 519.1 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.58 min 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 223 was separated using a Chiralpak AD-H column (250×20 mm: 5 μm; (50 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 60:40) as mobile phase) to provide the compound of Example 223A (Fraction I (−)) and the compound of Example 223B (Fraction II (+)).
Example 223A
Synthesis of (−)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 223A was produced as described in Example 223. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.14-8.12 (m, 1H), 7.79 (s, 1H), 7.67 (dd, 1H), 7.62 (s, 1H), 7.38 (dd, 1H), 7.10 (t, 1H), 6.96-6.90 (m, 1H), 6.86 (dd, 2H), 4.76 (t, 1H), 4.22 (d, 2H), 3.13 (s, 3H), 2.25 (d, 3H); Mass (ESI): 519.5 [M+1]; LCMS: 519.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.62 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.84 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=8.92 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −105.68 (c=0.25, CH2Cl2).
Example 223B
Synthesis of (+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)-3-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 223B was produced as described in Example 223. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.14-8.12 (m, 1H), 7.79 (s, 1H), 7.67 (dd, 1H), 7.62 (s, 1H), 7.38 (dd, 1H), 7.10 (t, 1H), 6.96-6.90 (m, 1H), 6.86 (dd, 2H), 4.76 (t, 1H), 4.22 (d, 2H), 3.13 (s, 3H), 2.25 (d, 3H); Mass (ESI): 519.5 [M+1]; LCMS: 519.0 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.61 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.83 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.5% RT=32.18 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 65:35); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +108.24 (c=0.25, CH2Cl2).
Example 224
Synthesis of (S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (30 mg, 0.03 mmol) and Xantphos (57 mg, 0.09 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-7-cyclopropyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.66 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (270 mg, 1.33 mmol) and cesium carbonate (303 mg, 0.93 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/85, 8/30, 15/70, 25/20, 30/10, 45/10)) to afford (S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (32 mg, 12%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.68 (s, 1H), 7.61 (s, 1H), 7.59 (s, 1H), 7.13 (d, 1H), 6.98 (d, 1H), 6.90 (s, 1H), 6.84 (s, 1H), 4.20-4.15 (m, 1H), 4.07-4.01 (m, 1H), 3.83 (s, 3H), 3.29 (s, 3H), 2.63 (d, 1H), 2.30 (s, 3H), 1.05-1.00 (m, 1H), 0.84-0.80 (m, 1H), 0.60-0.50 (m, 2H), 0.23-0.19 (m, 1H); Mass (ESI): 393.5 [M+1]; LCMS: 393 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.16 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.47 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.6% RT=9.10 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −9.00 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 225
Synthesis of (S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (38 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-7-cyclopropyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.44 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (108 mg, 0.53 mmol), cesium carbonate (200 mg, 0.61 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford (S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 11%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.25-8.23 (m, 1H), 8.17 (s, 1H), 8.04-8.02 (m, 1H), 7.63 (s, 1H), 7.38 (s, 1H), 6.96 (s, 1H), 4.18 (dd, 1H), 4.07 (dd, 1H), 3.95 (s, 3H), 3.28 (s, 3H), 2.64 (d, 1H), 2.29 (s, 3H), 1.07-0.98 (m, 1H), 0.85-0.78 (m, 1H), 0.65-0.51 (m, 2H), 0.25-0.20 (m, 1H); Mass (ESI): 394.4 [M+1]; LCMS: 394 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.14 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.42 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=8.62 min (CHIRALPAK-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −6.38 (c=0.25, CH2Cl2); TLC: 20% EtOAc:hexane (Rf: 0.1).
Example 226
Synthesis of 4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




Synthesis of 4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (18 mg, 0.02 mmol) and Xantphos (34 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.40 mmol), 4-aminobenzonitrile (93 mg, 0.80 mmol), cesium carbonate (180 mg, 0.55 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexane to afford 4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile (100 mg, 75%) as an off-white solid. LCMS: 335.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.53 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.2).
Racemic compound of Example 226 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 226A (Fraction I (+)) and the compound of Example 226B (Fraction II (−)).
Example 226A
Synthesis of (+)-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 226A was produced as described in Example 226. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.85 (d, 2H), 7.68 (s, 1H), 7.56 (d, 2H), 4.57 (dd, 1H), 4.40-4.37 (m, 1H), 4.05-3.99 (m, 1H), 3.34 (s, 3H); Mass (ESI): 336.4 [M+1]; LCMS: 335.9 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.75 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.3% RT=6.78 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +75.10 (c=0.25, CH2Cl2).
Example 226B
Synthesis of (−)-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 226B was produced as described in Example 226. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.85 (d, 2H), 7.68 (s, 1H), 7.56 (d, 2H), 4.57 (dd, 1H), 4.40-4.37 (m, 1H), 4.05-3.99 (m, 1H), 3.34 (s, 3H); Mass (ESI): 336.4 [M+1]; LCMS: 335.9 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.74 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=7.99 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −80.60 (c=0.25, CH2Cl2).
Example 227
Synthesis of (S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine)
To a dry vial was added a suspension of Pd2(dba)3 (19 mg, 0.02 mmol) and Xantphos (36 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-7-cyclobutyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.41 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (170 mg, 0.83 mmol), cesium carbonate (191 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/20, 30/10, 35/10)) to afford (S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (1.8 g, 58%) as a brown solid. 1H-NMR (CD3OD, 400 MHz): δ 7.72 (d, 2H), 7.47 (s, 1H), 7.20 (d, 2H), 7.00 (s, 1H), 4.12-4.10 (m, 1H), 3.82 (s, 3H), 3.81-3.79 (m, 1H), 3.45-3.42 (m, 1H), 3.25 (s, 3H), 2.70-2.61 (m, 1H), 2.24 (s, 3H), 2.14-2.10 (m, 2H), 2.08-2.00 (m, 1H), 1.96-1.90 (m, 2H), 1.87-1.80 (m, 1H); Mass (ESI): 407.5 [M+1]; LCMS: 407.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.59 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 228
Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (78 mg, 0.13 mmol) in 1, 4-dioxane (5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.90 mmol), 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline (240 mg, 1.08 mmol) and cesium carbonate (410 mg, 1.26 mmol) in 1, 4-dioxane (5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 12 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (85 mg, 21%) as a brown solid. LCMS: 440.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.78 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 228 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 80:20) as mobile phase) to provide the compound of Example 228A (Fraction I (+)) and the compound of Example 228B (Fraction II (−)).
Example 228A
Synthesis of (+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 228A was produced as described in Example 228. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.31 (s, 1H), 7.85-7.83 (m, 1H), 7.75 (s, 1H), 7.74 (s, 1H), 7.44 (s, 1H), 7.32 (d, 1H), 7.24 (d, 1H), 4.71-4.66 (m, 1H), 4.54 (d, 1H), 4.09-4.01 (m, 1H), 3.80 (s, 3H), 3.30 (s, 3H); Mass (ESI): 441.7 [M+1]; LCMS: 441 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.78 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC HSS-T3, 100×2.1 mm, 1.8μ); RT 1.86 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=14.35 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +62.65 (c=0.25, CH2Cl2).
Example 228B
Synthesis of (−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 228B was produced as described in Example 228. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.31 (s, 1H), 7.85-7.83 (m, 1H), 7.75 (s, 1H), 7.74 (s, 1H), 7.44 (s, 1H), 7.32 (d, 1H), 7.24 (d, 1H), 4.71-4.66 (m, 1H), 4.54 (d, 1H), 4.09-4.01 (m, 1H), 3.80 (s, 3H), 3.30 (s, 3H); Mass (ESI): 441.7 [M+1]; LCMS: 441 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.79 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.8μ); RT 1.87 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.6% RT=16.94 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −60.33 (c=0.25, CH2Cl2).
Example 229
Synthesis of N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (78 mg, 0.13 mmol) in 1, 4-dioxane (5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.90 mmol), 5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (240 mg, 1.08 mmol) and cesium carbonate (410 mg, 1.26 mmol) in 1, 4-dioxane (5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 12 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 0-3% MeOH: CH2Cl2 to afford N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 46%) as an off-white solid. LCMS: 425.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 229 was separated using a Chiralpak IB column (250×20 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 80:20) as mobile phase) to provide the compound of Example 229A (Fraction I (−)) and the compound of Example 229B (Fraction II (+)).
Example 229A
Synthesis of (−)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 229A was produced as described in Example 229. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.72 (s, 1H), 8.62 (s, 1H), 7.97 (s, 1H), 7.71 (s, 1H), 7.25 (s, 1H), 4.58 (dd, 1H), 4.42-4.35 (m, 1H), 4.12-4.08 (m, 1H), 3.35 (s, 3H), 2.26 (s, 3H); Mass (ESI): 425.9 [M+1]; LCMS: 425.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.31 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.8μ); RT 1.62 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.0% RT=7.27 min (CHIRALPAK-IB (150×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −38.91 (c=0.25, CH2Cl2).
Example 229B
Synthesis of (+)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 229B was produced as described in Example 229. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.72 (s, 1H), 8.62 (s, 1H), 7.97 (s, 1H), 7.71 (s, 1H), 7.25 (s, 1H), 4.58 (dd, 1H), 4.42-4.35 (m, 1H), 4.12-4.08 (m, 1H), 3.35 (s, 3H), 2.26 (s, 3H); Mass (ESI): 425.9 [M+1]; LCMS: 425.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.31 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.8μ); RT 1.61 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.0% RT=7.86 min (CHIRALPAK-IB (150×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +44.68 (c=0.25, CH2Cl2).
Example 230
Synthesis of 2-methoxy-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




Synthesis of 2-methoxy-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (18 mg, 0.02 mmol) and Xantphos (34 mg, 0.06 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.40 mmol), 4-amino-2-methoxybenzonitrile (59 mg, 0.40 mmol) and cesium carbonate (180 mg, 0.55 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford 2-methoxy-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile (80 mg, 55%) as a brown solid. LCMS: 365.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 40% EtOAc:hexane (Rf: 0.4).
Racemic compound of Example 230 was separated using a CHIRALPAK-ADH column (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min) as mobile phase) to provide the compound of Example 230A (Fraction I (+)) and the compound of Example 230B (Fraction II (−)).
Example 230A
Synthesis of (+)-2-methoxy-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 230A was produced as described in Example 230. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 500 MHz): δ 7.79 (s, 1H), 7.68 (s, 1H), 7.41 (d, 1H), 7.22 (dd, 1H), 4.56 (d, 1H), 4.40-4.37 (m, 1H), 4.03 (d, 1H), 3.93 (s, 3H), 3.35 (s, 3H); Mass (ESI): 366.5 [M+1]; LCMS: 366 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.33 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.8μ); RT 1.93 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=6.13 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +57.04 (c=0.25, CH2Cl2).
Example 230B
Synthesis of (−)-2-methoxy-4-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 230B was produced as described in Example 230. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 500 MHz): δ 7.79 (s, 1H), 7.68 (s, 1H), 7.41 (d, 1H), 7.22 (dd, 1H), 4.56 (d, 1H), 4.40-4.37 (m, 1H), 4.03 (d, 1H), 3.93 (s, 3H), 3.35 (s, 3H); Mass (ESI): 366.5 [M+1]; LCMS: 366 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.33 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.8μ); RT 1.93 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.3% RT=15.16 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −64.73 (c=0.25, CH2Cl2).
Example 231
Synthesis of 7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (71 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(4, 4-difluorocyclohexyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.82 mmol), 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-amine (336 mg, 1.65 mmol) and cesium carbonate (376 mg, 1.15 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by preparative HPLC (Kromasil-C-18 250×21.2 mm, 5 u (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/30, 30/10, 35/10)) 5 μm to afford 7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 31%) as a brown solid. LCMS: 472.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.65 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.72 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 231 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 75:25) as mobile phase) to provide the compound of Example 231A (Fraction I (+)) and the compound of Example 231B (Fraction II (−)).
Example 231A
Synthesis of (+)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 231A was produced as described in Example 231. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.10 (s, 1H), 8.38 (s, 1H), 8.15 (s, 1H), 8.11 (s, 1H), 7.92 (s, 1H), 7.57 (s, 1H), 4.36 (d, 1H), 3.90 (s, 3H), 3.87 (s, 3H), 3.79 (dd, 1H), 3.49-3.46 (m, 1H), 3.23 (s, 3H), 2.09-2.00 (m, 2H), 1.92-1.67 (m, 5H), 1.50-1.31 (m, 2H); Mass (ESI): 472.6 [M+1]; LCMS: 472.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=15.14 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +94.08 (c=0.25, CH2Cl2).
Example 231B
Synthesis of (−)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 231B was produced as described in Example 231. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.10 (s, 1H), 8.38 (s, 1H), 8.15 (s, 1H), 8.11 (s, 1H), 7.92 (s, 1H), 7.57 (s, 1H), 4.36 (d, 1H), 3.90 (s, 3H), 3.87 (s, 3H), 3.79 (dd, 1H), 3.49-3.46 (m, 1H), 3.23 (s, 3H), 2.09-2.00 (m, 2H), 1.92-1.67 (m, 5H), 1.50-1.31 (m, 2H); Mass (ESI): 472.6 [M+1]; LCMS: 472.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.46 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.2% RT=17.80 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −93.72 (c=0.25, CH2Cl2).
Example 232
Synthesis of 2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




Synthesis of 2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (78 mg, 0.13 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.90 mmol), 5-amino-2-(4-methyl-1H-imidazol-1-yl) benzonitrile (360 mg, 1.81 mmol) and cesium carbonate (413 mg, 1.27 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by preparative HPLC (Kromasil-C-18 250×21.2 mm, 5 u (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/90, 15/70, 25/30, 30/10, 35/10)) to afford 2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile (95 mg, 25%) as a white solid. LCMS: 416 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.18 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 232 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: EtOH (A:B: 75:25) as mobile phase) to provide the compound of Example 232A (Fraction I (+)) and the compound of Example 232B (Fraction II (−)).
Example 232A
Synthesis of (+)-2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 232A was produced as described in Example 232. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.66 (s, 1H), 8.42 (s, 1H), 8.03 (dd, 1H), 7.86 (s, 1H), 7.79 (s, 1H), 7.50 (d, 1H), 7.23 (s, 1H), 4.76-4.67 (m, 1H), 4.56 (d, 1H), 4.07 (d, 1H), 3.27 (s, 3H), 2.18 (s, 3H); Mass (ESI): 416.5 [M+1]; LCMS: 416 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.16 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.55 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=12.19 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +59.90 (c=0.25, CH2Cl2);
Example 232B
Synthesis of (−)-2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 232B was produced as described in Example 232. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.66 (s, 1H), 8.42 (s, 1H), 8.03 (dd, 1H), 7.86 (s, 1H), 7.79 (s, 1H), 7.50 (d, 1H), 7.23 (s, 1H), 4.76-4.67 (m, 1H), 4.56 (d, 1H), 4.07 (d, 1H), 3.27 (s, 3H), 2.18 (s, 3H); Mass (ESI): 416.5 [M+1]; LCMS: 416 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.17 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.54 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.8% RT=18.19 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −46.64 (c=0.25, CH2Cl2).
Example 233
Synthesis of 4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




Synthesis of 4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (23 mg, 0.02 mmol) and Xantphos (43 mg, 0.07 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.50 mmol), 4-aminobenzonitrile (119 mg, 1.01 mmol) and cesium carbonate (230 mg, 0.70 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 0-5% MeOH: CH2Cl2 to afford 4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile (90 mg, 47%) as a brown solid. LCMS: 381.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.92 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 233 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (20 mg loading; 0.1% DEA in n-hexane (B) IPA:CH2Cl2 (A:B; 75:20:5); as mobile phase) to provide the compound of Example 233A (Fraction I (+)) and the compound of Example 233B (Fraction II (−)).
Example 233A
Synthesis of (+)-4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 233A was produced as described in Example 233. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.90 (d, 2H), 7.67 (s, 1H), 7.61 (d, 2H), 6.99-6.90 (m, 1H), 6.89-6.83 (m, 2H), 4.80 (t, 1H), 4.24-4.22 (m, 2H), 3.18 (s, 3H); Mass (ESI): 380.5 [M+1]; LCMS: 380 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.02 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.06 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=16.12 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) IPA:CH2Cl2 (A:B; 75:20:5); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +183.44 (c=0.25, CH2Cl2).
Example 233B
Synthesis of (−)-4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile




The compound of Example 233B was produced as described in Example 233. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.90 (d, 2H), 7.67 (s, 1H), 7.61 (d, 2H), 6.99-6.90 (m, 1H), 6.89-6.83 (m, 2H), 4.80 (t, 1H), 4.24-4.22 (m, 2H), 3.18 (s, 3H); Mass (ESI): 380.5 [M+1]; LCMS: 380 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.00 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.06 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.4% RT=18.18 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) IPA:CH2Cl2 (A:B; 75:20:5); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −175.90 (c=0.25, CH2Cl2).
Example 234
Synthesis of N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (34 mg, 0.04 mmol) and Xantphos (65 mg, 0.11 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.75 mmol), 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (307 mg, 0.15 mmol) and cesium carbonate (368 mg, 0.11 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with 10% MeOH: CH2Cl2 (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 0-4% MeOH: CH2Cl2 to afford N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (220 mg, 80%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.14 (s, 1H), 8.23 (s, 1H), 8.07 (s, 1H), 7.67 (s, 1H), 7.63 (s, 1H), 7.05 (s, 1H), 4.11-3.93 (m, 2H), 3.89 (s, 3H), 3.75-3.65 (m, 1H), 3.16 (s, 3H), 2.15-2.12 (m, 3H), 1.23 (d, 3H); Mass (ESI): 368 [M+1]; LCMS: 368 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.97 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.26 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 235
Synthesis of (S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (19 mg, 0.02 mmol) and Xantphos (36 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-7-cyclobutyl-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.42 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (170 mg, 0.83 mmol) and cesium carbonate (191 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified column chromatography using 50% EtOAc:hexane to afford (S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (40 mg, 24%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.27 (d, 2H), 8.13 (s, 1H), 7.51 (s, 1H), 7.39 (s, 1H), 4.12 (dd, 1H), 3.97 (s, 3H), 3.84 (dd, 1H), 3.46-3.40 (m, 1H), 3.27 (s, 3H), 2.70-2.61 (m, 1H), 2.25 (s, 3H), 2.18-2.0 (m, 2H), 2.07-2.00 (m, 1H), 1.99-1.90 (m, 2H), 1.88-1.80 (m, 1H); Mass (ESI): 408.5 [M+1]; LCMS: 408.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.24 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.52 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.4% RT=10.01 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +25.71 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 236
Synthesis of N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (41 mg, 0.04 mmol) and Xantphos (78 mg, 0.13 mmol) in 1, 4-dioxane (1.15 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (230 mg, 0.90 mmol), 4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (203 mg, 0.99 mmol) and cesium carbonate (413 mg, 1.27 mmol) in 1, 4-dioxane (1.15 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexane to afford N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (120 mg, 31%) as an off-white solid. LCMS: 422 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.01 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.2).
Racemic compound of Example 236 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: IPA:CH2Cl2 (2:1); (A:B: 70:30) as mobile phase) to provide the compound of Example 236A (Fraction I (+)) and the compound of Example 236B (Fraction II (−)).
Example 236A
Synthesis of (+)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 236A was produced as described in Example 236. Analytical data for product Fraction I (+): 1H-NMR (DMSO-d6, 400 MHz): δ 9.39 (s, 1H), 8.20 (s, 1H), 8.09 (s, 1H), 7.79 (s, 1H), 7.68 (s, 1H), 7.09-7.03 (m, 1H), 4.78-4.70 (m, 1H), 4.57 (d, 1H), 4.07 (d, 1H), 3.91 (s, 3H), 3.30 (s, 3H), 2.12 (s, 3H); Mass (ESI): 422.3 [M+1]; LCMS: 422 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.11 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.39 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.9% RT=10.43 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) IPA:CH2Cl2 (A:B; 70:20:10); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +57.12 (c=0.25, CH2Cl2).
Example 236B
Synthesis of (−)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 236B was produced as described in Example 236. Analytical data for product Fraction II (−): 1H-NMR (DMSO-d6, 400 MHz): δ 9.39 (s, 1H), 8.20 (s, 1H), 8.09 (s, 1H), 7.79 (s, 1H), 7.68 (s, 1H), 7.09-7.03 (m, 1H), 4.78-4.70 (m, 1H), 4.57 (d, 1H), 4.07 (d, 1H), 3.91 (s, 3H), 3.30 (s, 3H), 2.12 (s, 3H); Mass (ESI): 380.5 [M+1]; LCMS: 422 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.00 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.36 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.7% RT=18.43 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) IPA:CH2Cl2 (A:B; 70:20:10); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −56.35 (c=0.25, CH2Cl2).
Example 237
Synthesis of 4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile




Synthesis of 4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile
To a dry vial was added a suspension of Pd2(dba)3 (15 mg, 0.01 mmol) and Xantphos (29 mg, 0.05 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.33 mmol), 4-amino-2-methoxybenzonitrile (99 mg, 0.67 mmol) and cesium carbonate (153 mg, 0.47 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (column; X-select CSH C-18 (250×190 mm, 2.7 μm); (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/50, 25/30, 30/10, 40/10)) to afford 4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile (60 mg, 43%) as an off-white solid. LCMS: 410 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.04 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.2).
Racemic compound of Example 237 was separated using a Chiralpak ADH column (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 60:40) as mobile phase) to provide the compound of Example 237A (Fraction I (−)) and the compound of Example 237B (Fraction II (+)).
Example 237A
Synthesis of (−)-4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile




The compound of Example 237A was produced as described in Example 237. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.83 (s, 1H), 7.65 (s, 1H), 7.41 (d, 1H), 7.23 (dd, 1H), 6.97-6.89 (m, 1H), 6.88-6.81 (m, 2H), 4.79-4.76 (m, 1H), 4.24 (s, 2H), 3.93 (s, 3H), 3.18 (s, 3H); Mass (ESI): 410.6 [M+1]; LCMS: 410 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.04 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.05 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=10.21 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −108.83 (c=0.25, CH2Cl2).
Example 237B
Synthesis of (+)-4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile




The compound of Example 237B was produced as described in Example 237. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.83 (s, 1H), 7.65 (s, 1H), 7.41 (d, 1H), 7.23 (dd, 1H), 6.97-6.89 (m, 1H), 6.88-6.81 (m, 2H), 4.79-4.76 (m, 1H), 4.24 (s, 2H), 3.93 (s, 3H), 3.18 (s, 3H); Mass (ESI): 410.5 [M+1]; LCMS: 410 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.04 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 2.04 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.9% RT=16.37 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.04: +107.45 (c=0.25, CH2Cl2).
Example 238
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.56 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (230 mg, 1.12 mmol) and cesium carbonate (255 mg, 0.78 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (column; X-select CSH C-18 (250×190 mm, 2.7 μm); (70 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/50, 25/20, 30/10, 40/10)) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (100 mg, 41%) as an off-white solid. LCMS: 436 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.23 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 238 was separated using a Chiralpak AD-H column (250×20 mm: 5 μm; (50 mg loading; 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); as mobile phase) to provide the compound of Example 238A (Fraction I (−)) and the compound of Example 238B (Fraction II (+)).
Example 238A
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 238A was produced as described in Example 238. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.26 (m, 2H), 8.12 (s, 1H), 7.63 (s, 1H), 7.39 (s, 1H), 4.28 (dd, 1H), 4.00 (d, 2H), 3.97 (s, 3H), 3.25 (s, 3H), 2.68-2.57 (m, 2H), 2.26 (s, 3H); Mass (ESI): 436.7 [M+1]; LCMS: 436 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.15 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.46 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.4% RT=11.60 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −3.58 (c=0.25, CH2Cl2).
Example 238B
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 238B was produced as described in Example 238. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.30-8.26 (m, 2H), 8.12 (s, 1H), 7.63 (s, 1H), 7.39 (s, 1H), 4.28 (dd, 1H), 4.00 (d, 2H), 3.97 (s, 3H), 3.25 (s, 3H), 2.68-2.57 (m, 2H), 2.26 (s, 3H); Mass (ESI): 436.6 [M+1]; LCMS: 436 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.16 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.48 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.7% RT=17.40 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +7.42 (c=0.25, CH2Cl2).
Example 239
Synthesis of 4-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide




Synthesis of 4-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide
To a dry vial was added a suspension of Pd2(dba)3 (21 mg, 0.02 mmol) and Xantphos (41 mg, 0.07 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 4-(2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide (150 mg, 0.47 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (192 mg, 0.94 mmol), cesium carbonate (2.5 mg, 0.66 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 4-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide (170 mg, 85%) as an off-white solid. UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.20 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 239 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (30 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 60:40) as mobile phase) to provide the compound of Example 239A (Fraction I (−)) and the compound of Example 239B (Fraction II (+)).
Example 239A
Synthesis of (−)-4-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide




The compound of Example 239A was produced as described in Example 239. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.75-7.73 (m, 1H), 7.65-7.63 (m, 1H), 7.53 (s, 1H), 7.24-7.16 (m, 2H), 6.96 (s, 1H), 4.41 (d, 1H), 3.89-3.87 (m, 1H), 3.86 (s, 3H), 3.52-3.48 (m, 1H), 3.30 (s, 3H), 3.20-2.99 (m, 4H), 2.23 (s, 4H), 2.14-2.00 (m, 4H); Mass (ESI): 485.5 [M+1]; LCMS: 485 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.38 min. 0.025% Aq TFA+5% ACN: ACN+0.025% Aq TFA; 1.2 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.22 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.0% RT=11.04 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −97.64 (c=0.25, CH2Cl2).
Example 239B
Synthesis of (+)-4-(2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H-thiopyran 1, 1-dioxide




The compound of Example 239B was produced as described in Example 239. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.75-7.73 (m, 1H), 7.65-7.63 (m, 1H), 7.53 (s, 1H), 7.24-7.16 (m, 2H), 6.96 (s, 1H), 4.41 (d, 1H), 3.89-3.87 (m, 1H), 3.86 (s, 3H), 3.52-3.48 (m, 1H), 3.30 (s, 3H), 3.20-2.99 (m, 4H), 2.23 (s, 4H), 2.14-2.00 (m, 4H); Mass (ESI): 485.5 [M+1]; LCMS: 485 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.38 min. 0.025% Aq TFA+5% ACN: ACN+0.025% Aq TFA; 1.2 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.22 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=12.95 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 60:40); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +101.45 (c=0.25, CH2Cl2).
Example 240
Synthesis of (S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (76 mg, 0.12 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-7-(tert-butyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.83 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (338 mg, 1.65 mmol) and cesium carbonate (377 mg, 1.16 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (10 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/30, 25/10, 30/10, 35/10)) to afford (S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (40 mg, 12%) as a white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.77 (s, 1H), 7.66 (s, 1H), 7.49 (s, 1H), 7.32-7.20 (m, 1H), 7.20-7.08 (m, 1H), 6.97 (s, 1H), 4.54 (d, 1H), 3.86 (s, 3H), 3.76 (dd, 1H), 3.32 (s, 3H), 3.27-3.25 (m, 1H), 2.23 (s, 3H), 1.09 (s, 9H); Mass (ESI): 409.5 [M+1]; LCMS: 409 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.63 min. 0.025% Aq TFA+5% ACN: 5% ACN+0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5 μm); RT 6.67 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 95.6% RT=19.05 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +25.60 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 241
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (47 mg, 0.05 mmol) and Xantphos (90 mg, 0.15 mmol) in 1, 4-dioxane (2.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.03 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (420 mg, 2.07 mmol) and sodium tert-butoxide (298 mg, 3.10 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 1 h in a microwave. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered, washed with 10% MeOH: CH2Cl2 and the filtrate was concentrated in vacuo. The crude material was purified by preparative HPLC (Column YMC Actus Triart C18 (250×20 mm: 5μ; (100 mg loading; CH3CN: 5 mM NH4OAc (0.1/90, 2/90, 15/70, 25/30, 30/10, 35/10) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 42%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 9.09 (s, 1H), 7.83 (s, 1H), 7.60 (s, 1H), 7.58 (s, 1H), 7.27 (dd, 1H), 7.13 (d, 1H), 6.98 (s, 1H), 4.70-4.64 (m, 2H), 4.61-4.53 (m, 2H), 4.06-3.96 (m, 2H), 3.86 (dd, 1H), 3.75 (s, 3H), 3.32-3.30 (m, 1H), 3.16 (s, 3H), 2.12 (s, 3H); LCMS: 409.4 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min. 5 mM Aq NH4OAc: ACN; 0.8 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 8.50 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 241 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (40 mg loading; 0.1% DEA in n-hexane: EtOH:MeOH (50:50); (A:B: 50:50) as mobile phase) to provide the compound of Example 241A (Fraction I (−)) and the compound of Example 241B (Fraction II (+)).
Example 241A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 241A was produced as described in Example 241. Analytical data for product Fraction I (−): 1H-NMR (DMSO-d6, 500 MHz): δ 9.09 (s, 1H), 7.83 (s, 1H), 7.60 (s, 1H), 7.58 (s, 1H), 7.27 (dd, 1H), 7.13 (d, 1H), 6.98 (s, 1H), 4.70-4.64 (m, 2H), 4.61-4.53 (m, 2H), 4.06-3.96 (m, 2H), 3.86 (dd, 1H), 3.75 (s, 3H), 3.32-3.30 (m, 1H), 3.16 (s, 3H), 2.12 (s, 3H); Mass (ESI): 409.5 [M+1]; LCMS: 409.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 8.57 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.1% RT=15.03 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 50:50); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −14.94 (c=0.25, CH2Cl2).
Example 241B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 241B was produced as described in Example 241. Analytical data for product Fraction II (+): 1H-NMR (DMSO-d6, 500 MHz): δ 9.09 (s, 1H), 7.83 (s, 1H), 7.60 (s, 1H), 7.58 (s, 1H), 7.27 (dd, 1H), 7.13 (d, 1H), 6.98 (s, 1H), 4.70-4.64 (m, 2H), 4.61-4.53 (m, 2H), 4.06-3.96 (m, 2H), 3.86 (dd, 1H), 3.75 (s, 3H), 3.32-3.30 (m, 1H), 3.16 (s, 3H), 2.12 (s, 3H); Mass (ESI): 409.5 [M+1]; LCMS: 409.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.39 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 8.57 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.0% RT=19.91 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 50:50); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +22.06 (c=0.25, CH2Cl2).
Example 242
Synthesis of N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (46 mg, 0.05 mmol) and Xantphos (85 mg, 0.14 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.98 mmol), 3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) aniline (248 mg, 0.98 mmol) and cesium carbonate (446 mg, 1.37 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH/CH2Cl2 to afford N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 54%) as an off-white solid. LCMS: 422 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.75 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 242 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (35 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 242A (Fraction I (−)) and the compound of Example 242B (Fraction II (+)).
Example 242A
Synthesis of (−)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 242A was produced as described in Example 242. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.61 (s, 1H), 7.83-7.81 (m, 1H), 7.66 (s, 1H), 7.45 (d, 1H), 7.28 (dd, 1H), 4.57 (dd, 1H), 4.36 (dd, 1H), 4.03 (dt, 1H), 3.93 (s, 3H), 3.38 (s, 3H), 2.42 (s, 3H); Mass (ESI): 422.4 [M+1]; LCMS: 422 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.76 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.89 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 100% RT=12.84 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −62.81 (c=0.25, CH2Cl2).
Example 242B
Synthesis of (+)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 242B was produced as described in Example 242. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.61 (s, 1H), 7.83-7.81 (m, 1H), 7.66 (s, 1H), 7.45 (d, 1H), 7.28 (dd, 1H), 4.57 (dd, 1H), 4.36 (dd, 1H), 4.03 (dt, 1H), 3.93 (s, 3H), 3.38 (s, 3H), 2.42 (s, 3H); Mass (ESI): 422.5 [M+1]; LCMS: 422 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.76 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.89 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 100% RT=14.68 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +65.52 (c=0.25, CH2Cl2).
Example 243
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (47 mg, 0.05 mmol) and Xantphos (90 mg, 0.15 mmol) in 1, 4-dioxane (2.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 1.03 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (420 mg, 2.07 mmol) and sodium tert-butoxide (298 mg, 3.10 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 1 h in a microwave. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered, washed with 10% MeOH/CH2Cl2 and concentrated in vacuo. The crude material was purified by preparative HPLC (Kromasil-C-18 250×21.2 mm, 5 u (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/30, 30/10, 35/10) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (150 mg, 35%) as an off-white solid. LCMS: 410.4 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.29 min. 5 mM Aq NH4OAc: ACN; 0.8 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 243 was separated using a Chiralpak IA column (250×4.6 mm: 5 μm; (15 mg loading; 0.1% DEA in n-hexane: EtOH: THF (A:B: C: 70:25:5) as mobile phase) to provide the compound of Example 243A (Fraction I (+)) and the compound of Example 243B (Fraction II (−)).
Example 243A
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 243A was produced as described in Example 243. Analytical data for product Fraction I (+): 1H-NMR (400 MHz, DMSO-d6): δ 9.32 (s, 1H), 8.32-8.30 (m, 2H), 8.05 (s, 1H), 7.61 (s, 1H), 7.37 (s, 1H), 4.72-4.69 (m, 2H), 4.67-4.58 (m, 2H), 4.10-4.01 (m, 2H), 3.89 (s, 3H), 3.88-3.86 (m, 1H), 3.32-3.30 (m, 1H), 3.20 (s, 3H), 2.18 (s, 3H); Mass (ESI): 410.4 [M+1]; LCMS: 410.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.34 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 9.55 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.7% RT=17.52 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH: THF (A:B; 70:25:5); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +29.88 (c=0.25, CH2Cl2).
Example 243B
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(oxetan-3-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 243B was produced as described in Example 243. Analytical data for product Fraction II (−): 1H-NMR (400 MHz, DMSO-d6): δ 9.32 (s, 1H), 8.32-8.30 (m, 2H), 8.05 (s, 1H), 7.61 (s, 1H), 7.37 (s, 1H), 4.72-4.69 (m, 2H), 4.67-4.58 (m, 2H), 4.10-4.01 (m, 2H), 3.89 (s, 3H), 3.88-3.86 (m, 1H), 3.32-3.30 (m, 1H), 3.20 (s, 3H), 2.18 (s, 3H); Mass (ESI): 410.4 [M+1]; LCMS: 410.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.32 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 9.56 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 96.0% RT=18.91 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH: THF (A:B; 70:25:5); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −22.27 (c=0.25, CH2Cl2).
Example 244
Synthesis of 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (38 mg, 0.04 mmol) and Xantphos (73 mg, 0.12 mmol) in 1, 4-dioxane (1.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (250 mg, 0.84 mmol), 3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) aniline (343 mg, 1.68 mmol) and cesium carbonate (383 mg, 1.17 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 32 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 1-5% MeOH/CH2Cl2 to afford 7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (200 mg, 51%) as an off-white solid. LCMS: 466 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.91 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 244 was separated using a Chiralpak IA column (250×20 mm: 5 μm; (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 80:20) as mobile phase) to provide the compound of Example 244A (Fraction I (+)) and the compound of Example 244B (Fraction II (−)).
Example 244A
Synthesis of (+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 244A was produced as described in Example 244. Analytical data for product Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 8.61 (s, 1H), 7.85-7.83 (m, 1H), 7.62 (s, 1H), 7.45 (d, 1H), 7.28 (dd, 1H), 6.97-6.82 (m, 3H), 4.77-4.74 (m, 1H), 4.24-4.22 (m, 2H), 3.91 (s, 3H), 3.18 (s, 3H), 2.42 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.94 min 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 7.36 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 99.2% RT=13.75 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +158.97 (c=0.25, CH2Cl2).
Example 244B
Synthesis of (−)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 244B was produced as described in Example 244. Analytical data for product Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 8.61 (s, 1H), 7.85-7.83 (m, 1H), 7.62 (s, 1H), 7.45 (d, 1H), 7.28 (dd, 1H), 6.97-6.82 (m, 3H), 4.77-4.74 (m, 1H), 4.24-4.22 (m, 2H), 3.91 (s, 3H), 3.18 (s, 3H), 2.42 (s, 3H); Mass (ESI): 466.4 [M+1]; LCMS: 466 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.95 min 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 7.37 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 99.4% RT=17.25 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: −151.52 (c=0.25, CH2Cl2).
Example 245
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (31 mg, 0.03 mmol) and Xantphos (59 mg, 0.10 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (200 mg, 0.68 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (278 mg, 1.36 mmol) and cesium carbonate (620 mg, 1.91 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH/CH2Cl2 and further purified by preparative HPLC (Column YMC Actus Triart C18 (250×20 mm: 5μ; (50 mg loading; CH3CN: 0-05% aq TFA (0.1/90, 2/90, 15/70, 25/30, 30/10, 35/10) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 57%) as an off-white solid. LCMS: 461 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.68 min 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 245 was separated using a Chiralpak-IA column (250×4.6 mm, 5 μm) (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 80:20) as mobile phase) to provide the compound of Example 245A (Fraction I (−)) and the compound of Example 245B (Fraction II (+)).
Example 245A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 245A was produced as described in Example 245. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 1H), 7.66 (s, 1H), 7.55 (s, 1H), 7.24-7.14 (m, 2H), 6.97 (s, 1H), 4.45 (d, 1H), 4.05 (dd, 1H), 3.91-3.88 (m, 1H), 3.86 (s, 3H), 3.27 (s, 3H), 2.23 (s, 3H), 1.38-1.20 (m, 1H), 1.18-1.12 (m, 1H), 1.09-1.02 (m, 1H), 0.75-0.65 (m, 1H); Mass (ESI): 461.5 [M+1]; LCMS: 461.1 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.50 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.84 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 100% RT=11.23 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −10.25 (c=0.25, CH2Cl2).
Example 245B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 245B was produced as described in Example 245. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.72 (s, 1H), 7.66 (s, 1H), 7.55 (s, 1H), 7.24-7.14 (m, 2H), 6.97 (s, 1H), 4.45 (d, 1H), 4.05 (dd, 1H), 3.91-3.88 (m, 1H), 3.86 (s, 3H), 3.27 (s, 3H), 2.23 (s, 3H), 1.38-1.20 (m, 1H), 1.18-1.12 (m, 1H), 1.09-1.02 (m, 1H), 0.75-0.65 (m, 1H); Mass (ESI): 461.5 [M+1]; LCMS: 461 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.49 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.83 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 99.4% RT=13.12 min (CHIRALPAK-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +17.29 (c=0.25, CH2Cl2).
Example 246
Synthesis of (S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (19 mg, 0.02 mmol) and Xantphos (36 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-7-(tert-butyl)-2-chloro-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.41 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (170 mg, 0.83 mmol) and cesium carbonate (189 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 1-5% MeOH/CH2Cl2 to afford (S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (20 mg, 12%) as pale yellow solid. 1H-NMR (CD3OD, 400 MHz): δ 8.32 (s, 1H), 8.29 (s, 1H), 8.13 (s, 1H), 7.52 (s, 1H), 7.39 (s, 1H), 4.56 (d, 1H), 3.98 (s, 3H), 3.77 (dd, 1H), 3.36 (s, 3H), 3.26-3.24 (m, 1H), 2.25 (s, 3H), 1.06 (s, 9H) Mass (ESI): 410.1 [M+1]; LCMS: 410.1 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.60 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); UPLC (column; Acquity UPLC BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.51 min. ACN: 0.025% Aq TFA; 0.5 mL/min); Chiral HPLC: 95.1% RT=17.59 min (CHIRALPAK-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +47.31 (c=0.25, CH2Cl2).
Example 247
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (23.4 mg, 0.02 mmol) and Xantphos (44 mg, 0.07 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.51 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (205 mg, 1.02 mmol) and cesium carbonate (234 mg, 0.72 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premix was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 6-8% MeOH/CH2Cl2 to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 57%) as a pale yellow solid. LCMS: 462 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.69 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Racemic compound of Example 247 was separated using a Chiralpak-AD-H column (250×20 mm, 5 μm) (20 mg loading; 0.1% DEA in n-hexane; EtOH:MeOH (50:50) (A:B; 70:30); 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 70:30) as mobile phase) to provide the compound of Example 247A (Fraction I (−)) and the compound of Example 247B (Fraction II (+)).
Example 247A
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 247A was produced as described in Example 247. Analytical data for product Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 8.28-8.26 (m, 2H), 8.13 (s, 1H), 7.58 (s, 1H), 7.40 (s, 1H), 4.45 (d, 1H), 4.06 (dd, 1H), 3.97 (s, 3H), 3.89-3.86 (m, 1H), 3.28 (s, 3H), 2.25 (s, 3H), 1.25-1.20 (m, 1H), 1.19-1.16 (m, 1H), 1.10-1.02 (m, 1H), 0.73-0.69 (m, 1H); Mass (ESI): 462.4 [M+1]; LCMS: 462 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.67 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); UPLC (column; Acquity UPLC BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.56 min. ACN: 0.025% Aq TFA; 0.5 mL/min); Chiral HPLC: 95.0% RT=6.02 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −11.12 (c=0.25, CH2Cl2).
Example 247B
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




The compound of Example 247B was produced as described in Example 247. Analytical data for product Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 8.28-8.26 (m, 2H), 8.13 (s, 1H), 7.58 (s, 1H), 7.40 (s, 1H), 4.45 (d, 1H), 4.06 (dd, 1H), 3.97 (s, 3H), 3.89-3.86 (m, 1H), 3.28 (s, 3H), 2.25 (s, 3H), 1.25-1.20 (m, 1H), 1.19-1.16 (m, 1H), 1.10-1.02 (m, 1H), 0.73-0.69 (m, 1H); Mass (ESI): 462.4 [M+1]; LCMS: 462 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.67 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); UPLC (column; Acquity UPLC BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.56 min. ACN: 0.025% Aq TFA; 0.5 mL/min); Chiral HPLC: 97.6% RT=10.38 min (CHIRALPAK-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.96: +9.68 (c=0.25, CH2Cl2).
Example 248
Synthesis of 2-chloro-7, 7-dimethyl-8-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of 2-((2-chloro-5-methoxypyrimidin-4-yl) amino)-2-methylpropan-1-ol
To a stirred solution of 2, 4-dichloro-5-methoxypyrimidine (5 g, 27.93 mmol) in 1, 4-dioxane (50 mL) under an argon atmosphere were added diisopropylethylamine (7.2 g, 55.86 mmol) and 2-amino-2-methylpropan-1-ol (2.4 g, 27.93 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 48 h. After consumption of the starting materials (monitored by TLC), the volatile components were removed in vacuo. The residue was diluted with a saturated sodium bicarbonate solution (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 2-((2-chloro-5-methoxypyrimidin-4-yl) amino)-2-methylpropan-1-ol (5.5 g, 84%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.69 (s, 1H), 6.19 (s, 1H), 6.11 (t, 1H), 3.82 (s, 3H), 3.45 (d, 2H), 1.33 (s, 6H); TLC: 50% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-4-((1-hydroxy-2-methylpropan-2-yl) amino) pyrimidin-5-ol
To a stirred solution of 2-((2-chloro-5-methoxypyrimidin-4-yl) amino)-2-methylpropan-1-ol (5.5 g, 23.80 mmol) in CH2Cl2 (100 mL) was added boron tribromide (34 mL, 357.14 mmol) at 0° C. under an argon atmosphere. The reaction mixture was warmed to room temperature and stirred for 24 h. After consumption of the starting materials (monitored by TLC), the reaction mixture was quenched with methanol (50 mL) at 0° C. and concentrated in vacuo. The residue was dissolved in EtOAc (2×100 mL) and washed with a sodium bicarbonate solution (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2-chloro-4-((1-hydroxy-2-methylpropan-2-yl) amino) pyrimidin-5-ol (4 g, 81%) as a white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 10.38 (br s, 1H), 7.48 (s, 1H), 6.03 (s, 1H), 5.11 (br s, 1H), 3.45 (s, 2H), 1.37 (s, 6H); TLC: 80% EtOAc:hexanes (Rf: 0.3).
Synthesis of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-hydroxy-2-methylpropan-2-yl) carbamate
To a stirred solution of 2-chloro-4-((1-hydroxy-2-methylpropan-2-yl) amino) pyrimidin-5-ol (4.3 g, 19.90 mmol) in CH2Cl2 (50 mL) under an argon atmosphere were added triethylamine (4.3 mL, 29.80 mmol) and Boc anhydride (4.3 g, 19.90 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of the starting materials (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexanes to afford tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-hydroxy-2-methylpropan-2-yl) carbamate (3 g, 48%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.00 (s, 1H), 6.61 (s, 1H), 5.07 (t, 1H), 3.49 (d, 2H), 1.50 (s, 9H), 1.37 (s, 6H); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Synthesis of tert-butyl 2-chloro-7, 7-dimethyl-6, 7-dihydro-8H-pyrimido [5, 4-b] [1, 4] oxazine-8-carboxylate
To a stirred solution of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-hydroxy-2-methylpropan-2-yl)carbamate (3 g, 9.46 mmol) in THF (30 mL) were added triphenylphosphine (2.9 g, 11.36 mmol) and diisopropylazodicarboxylate (2.3 g, 11.35 mmol) at 0° C. under an argon atmosphere. The reaction mixture was stirred for 1 h at 0° C. After consumption of the starting materials (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford tert-butyl 2-chloro-7, 7-dimethyl-6, 7-dihydro-8H-pyrimido [5, 4-b] [1, 4] oxazine-8-carboxylate (1.5 g, 53%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.11 (s, 1H), 4.01 (s, 2H), 1.52 (s, 9H), 1.38 (s, 6H); LCMS: 300.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.69 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-7, 7-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of tert-butyl 2-chloro-7, 7-dimethyl-6, 7-dihydro-8H-pyrimido [5, 4-b] [1, 4] oxazine-8-carboxylate (500 mg, 1.67 mmol) in CH2Cl2 (5 mL) under an argon atmosphere was added 4M HCl in 1, 4-dioxane (5 mL) at 0° C. The reaction mixture was stirred for 16 h at room temperature. After consumption of the starting materials (monitored by TLC), the volatile components were evaporated in vacuo. The residue was diluted with a saturated sodium bicarbonate solution (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2-chloro-7, 7-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (260 mg, 78%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.50 (s, 1H), 7.71 (s, 2H), 1.20 (s, 6H); TLC: 50% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of 2-chloro-7, 7-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (50 mg, 0.25 mmol) in DMF (0.5 mL) under an argon atmosphere were added sodium hydride (8.8 mg, 0.37 mmol) and methyl iodide (35.5 mg, 0.25 mmol) at 0° C. The reaction mixture was stirred for 30 min at 0° C. After consumption of the starting materials (monitored by TLC), the volatile components were evaporated in vacuo. The reaction mixture was diluted with ice cold water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford 2-chloro-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (30 mg, 56%) as a white solid. 1H NMR (DMSO-d6, 400 MHz): δ 7.68 (s, 1H), 3.93 (s, 2H), 3.00 (s, 3H), 1.24 (s, 6H); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Example 249
Synthesis of 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]




Synthesis of (1-((2-chloro-5-(4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) cyclopentyl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (1.5 g, 5.26 mmol) in 1, 4-dioxane (4 mL) under an argon atmosphere were added diisopropylethylamine (1.3 g, 21.05 mmol) and (1-aminocyclopentyl) methanol hydrochloride (1 g, 6.84 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo to obtain (1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) cyclopentyl) methanol (700 mg, 37%) as a brown liquid. LCMS: 364.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.29 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.4).
Synthesis of 2-chloro-4-((1-(hydroxymethyl) cyclopentyl) amino) pyrimidin-5-ol
To a stirred solution of (1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) cyclopentyl) methanol (120 mg, 0.33 mmol) in CH2Cl2 (1.2 mL) under an argon atmosphere was added trifluoroacetic acid (150 mg, 1.32 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (10 mL) and extracted with CH2Cl2 (2×10 mL). The aqueous layer was acidified with citric acid up to pH=5 and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2-chloro-4-((1-(hydroxymethyl) cyclopentyl) amino) pyrimidin-5-ol (80 mg, 99%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 400 MHz): δ 10.30 (br s, 1H), 8.13-8.11 (m, 1H), 7.46 (s, 1H), 6.13 (s, 1H), 3.70 (s, 2H), 2.00-1.93 (m, 2H), 1.90-1.88 (m, 2H), 1.80-1.61 (m, 4H); TLC: 50% EtOAc:hexane (Rf: 0.1).
Synthesis of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-(hydroxymethyl) cyclopentyl) carbamate
To a stirred solution of 2-chloro-4-((1-(hydroxymethyl) cyclopentyl) amino) pyrimidin-5-ol (500 mg, 2.05 mmol) in 1, 4-dioxane: water (1:1, 10 mL) under an argon atmosphere were added sodium hydroxide (98 mg, 2.46 mmol) and Boc anhydride (538 mg, 2.46 mmol) at 0° C. The reaction mixture was stirred for 3 h at 0° C. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The aqueous layer was acidified with citric acid up to pH=5 and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-(hydroxymethyl) cyclopentyl) carbamate (700 mg, 99%) as a brown liquid. LCMS: 344.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.70 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.6).
Synthesis of tert-butyl 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b][1,4]oxazine]-8′-carboxylate
To a stirred solution of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-(hydroxymethyl) cyclopentyl) carbamate (150 mg, 0.43 mmol) in THF (2 mL) under an argon atmosphere were added diisopropylazodicarboxylate (132 g, 0.65 mmol) and triphenylphosphine (171 mg, 0.65 mmol) at 0° C. The reaction mixture was stirred for 30 min at 0° C. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford tert-butyl 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (60 mg, 42%) as a colorless liquid. 1H-NMR (CD3OD, 400 MHz): δ 7.93 (s, 1H), 3.99 (s, 2H), 2.08-1.94 (m, 4H), 1.80-1.65 (m, 4H), 1.95 (s, 9H); TLC: 20% EtOAc:hexane (Rf: 0.7).
Synthesis of 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of tert-butyl 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (400 mg, 1.23 mmol) in CH2Cl2 (4 mL) under an argon atmosphere was added trifluoroacetic acid (561 mg, 4.92 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h at room temperature. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (270 mg, 97%) as a brown solid. 1H-NMR (CDCl3, 400 MHz): δ 7.75 (s, 1H), 5.50-5.43 (m, 1H), 3.90 (s, 2H), 1.89-1.80 (m, 4H), 1.79-1.70 (m, 4H); TLC: 20% EtOAc:hexane (Rf: 0.3).
Synthesis of 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.44 mmol) in DMF (1 mL) under an argon atmosphere was added sodium hydride (26 mg, 0.66 mmol) and methyl iodide (94 mg, 0.66 mmol) at 0° C. The reaction mixture was stirred for 5 min. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with ice water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were washed with water, dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2′-chloro-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 95%) as a brown liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.61 (s, 1H), 3.82 (s, 2H), 3.09 (s, 3H), 1.87-1.80 (m, 4H), 1.73-1.67 (m, 4H); LCMS: 240.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.32 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.3).
Example 250
Synthesis of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]




Synthesis of (1-aminocyclopropyl) methanol
To a stirred solution of lithium aluminum hydride (1.3 g, 36.23 mmol) in THF (30 mL) under an argon atmosphere was added ethyl 1-aminocyclopropane-1-carboxylate hydrochloride (3 g, 18.11 mmol) at 0° C. and stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium sulfate solution (100 mL) and stirred for 1 h. The reaction mixture was filtered and washed with 20% MeOH: CH2Cl2. The filtrate was concentrated in vacuo to obtain (1-aminocyclopropyl) methanol (1.5 g, 95%) as a colorless liquid used in the next step without further purification. TLC: EtOAc (Rf: 0.1).
Synthesis of (1-((2-chloro-5-(4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) cyclopropyl) methanol
To a stirred solution of (1-aminocyclopropyl) methanol (1.5 g, 17.54 mmol) in 1, 4-dioxane (6.4 mL) under an argon atmosphere were added diisopropylethylamine (6.4 mL, 35.08 mmol) and 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (5 g, 17.54 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexanes to afford (1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) cyclopropyl) methanol (1 g, 17%) as a brown liquid. 1H-NMR (CDCl3, 500 MHz): δ 7.62 (s, 1H), 7.30 (d, 1H), 7.28 (s, 1H), 6.93 (d, 2H), 5.87 (s, 1H), 4.97 (s, 2H), 4.10-4.07 (m, 1H), 3.80 (s, 3H), 3.65 (s, 2H), 1.01-0.99 (m, 2H), 0.85-0.83 (m, 2H); TLC: 30% EtOAc:hexane (Rf: 0.2).
Synthesis of 2-chloro-4-((1-(hydroxymethyl) cyclopropyl) amino) pyrimidin-5-ol
To a stirred solution of (1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) cyclopropyl) methanol (200 mg, 0.59 mmol) in CH2Cl2 (2 mL) under an argon atmosphere was added trifluoroacetic acid (136 mg) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (20 mL) and extracted with CH2Cl2 (2×20 mL). The aqueous layer was acidified with citric acid up to pH=5 and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2-chloro-4-((1-(hydroxymethyl) cyclopropyl) amino) pyrimidin-5-ol (50 mg, 39%) as an off-white solid used in the next step without further purification. 1H-NMR (CD3OD, 400 MHz): δ 7.40 (s, 1H), 3.69 (s, 2H), 0.99-0.90 (m, 2H), 0.89-0.82 (m, 2H); TLC: 50% EtOAc:hexane (Rf: 0.2).
Synthesis of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-(hydroxymethyl) cyclopropyl) carbamate
To a stirred solution of 2-chloro-4-((1-(hydroxymethyl) cyclopropyl) amino) pyrimidin-5-ol (50 mg, 0.23 mmol) in 1, 4-dioxane: water (1:1, 1 mL) under an argon atmosphere were added sodium hydroxide (18 g, 0.46 mmol) and Boc anhydride (76 mg, 0.34 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The aqueous layer was acidified with citric acid up to pH=5 and extracted with EtOAc (2×10 mL). The combined organic extracts were washed with water, dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 80% EtOAc:hexanes to afford tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-(hydroxymethyl) cyclopropyl) carbamate (20 mg, 27%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.22 (s, 1H), 3.80 (s, 2H), 1.42 (s, 9H), 1.00-0.91 (m, 2H), 0.85-0.80 (m, 2H); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of tert-butyl 2′-chloro-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate
To a stirred solution of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (1-(hydroxymethyl) cyclopropyl) carbamate (200 mg, 0.63 mmol) in THF (2 mL) under an argon atmosphere were added diisopropylazodicarboxylate (192 g, 0.95 mmol) and triphenylphosphine (249 mg, 0.95 mmol) at 0° C. The reaction mixture was stirred for 5 min. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford tert-butyl 2′-chloro-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (32 mg, 17%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 8.20 (s, 1H), 4.11 (s, 2H), 1.50 (s, 9H), 1.39-1.33 (m, 2H), 1.01-0.98 (m, 2H); TLC: 30% EtOAc:hexane (Rf: 0.4).
Synthesis of 2′-chloro-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of tert-butyl 2′-chloro-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (30 mg, 0.10 mmol) in CH2Cl2 (0.3 mL) under an argon atmosphere was added trifluoroacetic acid (23 mg, 0.20 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 20 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (10 mL) and extracted with CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2′-chloro-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (19 mg, 96%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.80 (s, 1H), 5.33 (br s, 1H), 3.95 (s, 2H), 0.96-0.94 (m, 4H); TLC: 50% EtOAc:hexane (Rf: 0.5).
Synthesis of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of 2′-chloro-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (300 mg, 1.52 mmol) in DMF (3 mL) under an argon atmosphere were added sodium hydride (91 mg, 2.28 mmol) and methyl iodide (324 mg, 2.28 mmol) at 0° C. The reaction mixture was stirred for 5 min. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with ice water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were washed with water, dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (230 mg, 72%) as a brown liquid. 1H-NMR (CDCl3, 400 MHz): δ 7.69 (s, 1H), 3.91 (s, 2H), 2.91 (s, 3H), 1.20 (t, 2H), 0.81 (t, 2H); TLC: 40% EtOAc:hexane (Rf: 0.5).
Example 251
Synthesis of 2′-chloro-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine]




Synthesis of tert-butyl (3-(iodomethyl) oxetan-3-yl) carbamate
To a stirred solution of tert-butyl (3-(hydroxymethyl) oxetan-3-yl) carbamate (2 g, 9.85 mmol) in CH2Cl2: toluene (2:1.60 mL) under an argon atmosphere were added imidazole (2.7 g, 39.40 mmol), triphenylphosphine (5 g, 19.70 mmol) and iodine (5 g, 19.70 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 5 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10-15% MeOH: CH2Cl2 to afford tert-butyl (3-(iodomethyl) oxetan-3-yl) carbamate (2.6 g, 84%) as a white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.79 (br s, 1H), 4.43 (d, 2H), 4.32-4.29 (m, 2H), 3.80 (s, 2H), 1.40 (s, 9H); LCMS: 314.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.73 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.7).
Synthesis of 2′-chloro-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of tert-butyl (3-(iodomethyl) oxetan-3-yl) carbamate (1.6 g, 5.11 mmol) in DMF (16 mL) under an argon atmosphere were added cesium carbonate (4.1 g, 15.33 mmol) and 2, 4-dichloropyrimidin-5-ol (700 mg, 5.11 mmol) at room temperature. The reaction mixture was stirred at 110° C. for 6 h in a sealed tube. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 40-60% EtOAc:hexane to afford 2′-chloro-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (800 mg, 44%) as a white solid. 1H NMR (DMSO-d6, 500 MHz): δ 9.25 (s, 1H), 7.77 (s, 1H), 4.63 (d, 2H), 4.46 (d, 2H), 4.34 (s, 2H); LCMS: 214.1 (M+1); (column; Eclipse XDB C-18 (150×4.6 mm, 5.0 μm); RT 6.42 min 5 mM Aq NH4OAc: ACN; 1.0 mL/min); TLC: EtOAc (Rf: 0.3).
Synthesis of 2′-chloro-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of 2′-chloro-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (800 mg, 3.75 mmol) in DMF (20 mL) under an argon atmosphere was added sodium hydride (225 mg, 5.63 mmol) portion wise at 0° C. Then methyl iodide (640 mg, 4.50 mmol) was added drop-wise to the reaction mixture at 0° C. and stirred for 30 min. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexane to afford 2′-chloro-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (750 mg, 88%) as an off-white solid. 1H NMR (CDCl3, 400 MHz): δ 7.71 (s, 1H), 4.99 (d, 2H), 4.52 (d, 2H), 4.39 (s, 2H), 3.41 (s, 3H); LCMS: 228.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.90 min 5 mM NH4OAc in water: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.7).
Example 252
Synthesis of 2′-chloro-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro[pyran-4,7′-pyrimido [5, 4-b] [1,4] oxazine]




Synthesis of (4-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) tetrahydro-2H-pyran-4-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (2 g, 7.04 mmol) in isopropyl alcohol (30 mL) under an argon atmosphere were added diisopropylethylamine (2.4 mL, 14.08 mmol) and (4-aminotetrahydro-2H-pyran-4-yl) methanol (900 mg, 7.04 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 48 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 20-30% EtOAc:hexanes to afford (4-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) tetrahydro-2H-pyran-4-yl) methanol (1 g, 38%) as a white solid.
1H NMR (CDCl3, 400 MHz): δ 7.66 (s, 1H), 7.30 (d, 2H), 6.94 (d, 2H), 5.47 (s, 1H), 5.03 (s, 2H), 4.60 (t, 1H), 3.87-3.83 (m, 5H), 3.80-3.73 (m, 2H), 3.68-3.60 (m, 2H), 1.97-1.87 (m, 4H); LCMS: 379.9 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.07 min. 0.05% Aq TFA: CH3CN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-chloro-4-((4-(hydroxymethyl) tetrahydro-2H-pyran-4-yl) amino) pyrimidin-5-ol
To a stirred solution of (4-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino) tetrahydro-2H-pyran-4-yl) methanol (200 g, 0.52 mmol) in CH2Cl2 (2 mL) under an argon atmosphere was added trifluoroacetic acid (1 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with a saturated sodium bicarbonate solution (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 2-chloro-4-((4-(hydroxymethyl) tetrahydro-2H-pyran-4-yl) amino) pyrimidin-5-ol (50 mg, 45%) as a white solid. 1H NMR (DMSO-d6, 500 MHz): δ 10.40 (s, 1H), 7.50 (s, 1H), 5.94 (s, 1H), 4.83 (br s, 1H), 3.71-3.60 (m, 4H), 3.50 (t, 2H), 2.26 (d, 2H), 1.72-1.58 (m, 2H); LCMS: 259.9 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.90 min. 0.05% Aq TFA: CH3CN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Synthesis of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (4-(hydroxymethyl) tetrahydro-2H-pyran-4-yl) carbamate
To a stirred solution of 2-chloro-4-((4-(hydroxymethyl) tetrahydro-2H-pyran-4-yl) amino) pyrimidin-5-ol (120 g, 0.46 mmol) in 1, 4-dioxane: water (1:1, 5 mL) under an argon atmosphere were added sodium hydroxide (22 mg, 0.55) and Boc anhydride (150 mg, 0.69 mmol) at 0° C. The reaction mixture was stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (10 mL) and extracted with EtOAc (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (4-(hydroxymethyl) tetrahydro-2H-pyran-4-yl) carbamate (100 mg, 60%) as a colorless liquid. LCMS: 360.0 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.27 min. 0.05% Aq TFA: CH3CN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of tert-butyl 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate
To a stirred solution of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (4-(hydroxymethyl) tetrahydro-2H-pyran-4-yl) carbamate (100 mg, 0.28 mmol) in THF (2 mL) under an argon atmosphere were added triphenylphosphine (66 mg, 0.33) and diisopropylazodicarboxylate (86 mg, 0.33 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexane to afford tert-butyl 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (38 mg, 40%) as a white solid. 1H NMR (CDCl3, 500 MHz) δ 7.95 (s, 1H), 4.29 (s, 2H), 4.02-3.99 (m, 2H), 3.60-3.57 (m, 2H), 1.61-1.57 (m, 4H), 1.29 (s, 9H); TLC: 50% EtOAc:hexane (Rf: 0.6).
Synthesis of 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of tert-butyl 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (120 mg, 0.35 mmol) in CH2Cl2 (2 mL) under an argon atmosphere was added 4 M HCl in 1, 4-dioxane (2 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexane to afford 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (60 mg, 71%) as a white solid. 1H NMR (CDCl3, 500 MHz): δ 7.79 (s, 1H), 5.87 (br s, 1H), 3.95 (s, 2H), 3.89-3.77 (m, 2H), 3.76-3.68 (m, 2H), 1.82-1.78 (m, 2H), 1.70-1.67 (m, 2H); LCMS: 241.9 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.15 min. 0.05% Aq TFA: CH3CN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.7).
Synthesis of 2′-chloro-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro[pyran-4,7′-pyrimido [5, 4-b] [1,4] oxazine]
To a stirred solution of 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (50 mg, 0.20 mmol) in DMF (0.5 mL) under an argon atmosphere was added sodium hydride (7.4 mg, 0.31 mmol) portion wise at 0° C. Then methyl iodide (29 mg, 0.20 mmol) was added drop wise to the reaction mixture at 0° C. and stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexane to afford 2′-chloro-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro[pyran-4,7′-pyrimido [5, 4-b] [1,4] oxazine] (30 mg, 57%) as a colorless liquid. 1H NMR (CDCl3, 400 MHz): δ 7.65 (s, 1H), 4.19 (s, 2H), 4.00-3.97 (m, 2H), 3.57 (t, 2H), 3.15 (s, 3H), 2.23-2.13 (m, 2H), 1.60-1.57 (m, 2H); LCMS: 255.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.63 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.5).
Example 253
Synthesis of 2′-chloro-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]




Synthesis of (1-((2-chloro-5-(4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-3, 3-difluorocyclobutyl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (350 mg, 1.22 mmol) in 1, 4-dioxane (1 mL) under an argon atmosphere were added diisopropylethylamine (0.42 mL, 2.45 mmol) and (1-amino-3, 3-difluorocyclobutyl) methanol (213 mg, 1.22 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 32 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexane to afford (1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-3, 3-difluorocyclobutyl) methanol (240 mg, 51%) as a brown solid. 1H NMR (DMSO-d6, 500 MHz): δ 7.77 (s, 1H), 7.47 (s, 1H), 7.40 (d, 2H), 6.93 (d, 2H), 5.14 (t, 1H), 5.10 (s, 2H), 3.75 (s, 3H), 3.61 (d, 2H), 2.96-2.76 (m, 4H); LCMS: 385.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.52 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-chloro-4-((3, 3-difluoro-1-(hydroxymethyl) cyclobutyl) amino) pyrimidin-5-ol
To a stirred solution of (1-((2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) amino)-3, 3-difluorocyclobutyl) methanol (400 mg, 1.03 mmol) in 1, 4-dioxane (3 mL) under an argon atmosphere was added 4M HCl in 1, 4-dioxane (3 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo to obtain 2-chloro-4-((3, 3-difluoro-1-(hydroxymethyl) cyclobutyl) amino) pyrimidin-5-ol (225 mg, 82%) as an off-white solid. LCMS: 265.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.64 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.1).
Synthesis of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (3, 3-difluoro-1-(hydroxymethyl) cyclobutyl) carbamate
To a stirred solution of 2-chloro-4-((3, 3-difluoro-1-(hydroxymethyl) cyclobutyl) amino) pyrimidin-5-ol (250 mg, 0.94 mmol) in 1, 4-dioxane (5 mL) under an argon atmosphere was added sodium hydroxide (75 mg, 1.88 mmol) in water (2 mL) at 0° C. and stirred for 10 min. Then Boc anhydride (246 mg, 1.12 mmol) was added to the reaction mixture at 0° C. and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was washed with ether (2×10 mL) to afford tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (3, 3-difluoro-1-(hydroxymethyl) cyclobutyl) carbamate (220 mg, crude) as a brown solid used in the next step without further purification. LCMS: 366.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.44 min 5 mM NH4OAc in water: ACN; 0.80 mL/min); TLC: 80% EtOAc:hexane (Rf: 0.6).
Synthesis of tert-butyl 2′-chloro-3, 3-difluoro-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate
To a stirred solution of tert-butyl (2-chloro-5-hydroxypyrimidin-4-yl) (3, 3-difluoro-1-(hydroxymethyl) cyclobutyl) carbamate (220 mg, 0.60 mmol) in THF (30 mL) under an argon atmosphere was added triphenylphosphine (236 mg, 0.90 mmol) at 0° C. The reaction mixture was stirred for 5 min, then diisopropylazodicarboxylate (182 mg, 0.90 mmol) was added at 0° C. The reaction mixture was warmed to room temperature and stirred for 6 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexane to afford tert-butyl 2′-chloro-3, 3-difluoro-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (100 mg, 48%) as a brown solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.27 (s, 1H), 4.30 (s, 2H), 3.30 (s, 2H), 2.81-2.79 (m, 2H), 1.53 (s, 9H); LCMS: 347.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.13 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.6).
Synthesis of 2′-chloro-3, 3-difluoro-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] hydrochloride
To a stirred solution of tert-butyl 2′-chloro-3, 3-difluoro-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]-8′-carboxylate (100 mg, 0.28 mmol) in 1, 4-dioxane (5 mL) under an argon atmosphere was added 4M HCl in 1, 4-dioxane (5 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo to obtain 2′-chloro-3, 3-difluoro-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] hydrochloride (80 mg, 99%) as an off-white solid. LCMS: 247.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.76 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.1).
Synthesis of 2′-chloro-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of 2′-chloro-3, 3-difluoro-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] hydrochloride (80 mg, 0.32 mmol) in THF (20 mL) under an argon atmosphere was added sodium hydride (23 mg, 0.97 mmol) at 0° C. The reaction mixture was stirred for 15 min, then methyl iodide (91 mg, 0.64 mmol) was added at 0° C. The reaction mixture was stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexanes to afford 2′-chloro-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (70 mg, 83%) as a brown solid. 1H NMR (CDCl3, 400 MHz): δ 7.73 (s, 1H), 4.15 (s, 2H), 3.23 (s, 3H), 3.13-3.01 (m, 2H), 2.77-2.66 (m, 2H); LCMS: 261.8 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.23 min. 0.025% Aq TFA+5% ACN: 5% ACN+0.025% Aq TFA; 1.2 mL/min); TLC: 20% EtOAc:hexane (Rf: 0.5).
Example 254
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (32 mg, 0.03 mmol) and Xantphos (61 mg, 0.01 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 7-dimethyl-8-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.70 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (285 mg, 1.40 mmol) and cesium carbonate (320 mg, 0.98 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3-4% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (60 mg, 22%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.71 (s, 1H), 7.68 (s, 1H), 7.51 (s, 1H), 7.17-7.12 (m, 2H), 6.93 (s, 1H), 3.84 (s, 5H), 3.14 (s, 3H), 2.21 (s, 3H), 1.31 (s, 6H); Mass (ESI): 381.0 [M+1]; LCMS: 381.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.37 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 255
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (32 mg, 0.03 mmol) and Xantphos (61 mg, 0.01 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 7-dimethyl-8-phenyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (150 mg, 0.70 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl)aniline (268 mg, 1.40 mmol) and cesium carbonate (320 mg, 0.98 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3-4% MeOH: CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7,7,8-trimethyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (60 mg, 23%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.95 (d, 1H), 7.75 (s, 1H), 7.53 (s, 1H), 7.40-7.30 (m, 2H), 7.05 (s, 1H), 3.84 (s, 2H), 3.12 (s, 3H), 2.25 (s, 3H), 1.31 (s, 6H); Mass (ESI): 369.1 [M+1]; LCMS: 369 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.03 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 10.27 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 256
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (23 mg, 0.02 mmol) and Xantphos (36 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.41 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (169 mg, 0.83 mmol) and cesium carbonate (190 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3-4% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (60 mg, 35%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.73 (s, 1H), 7.68 (s, 1H), 7.50 (s, 1H), 7.15 (s, 2H), 6.97 (s, 1H), 3.84 (s, 5H), 3.12 (s, 3H), 2.20 (s, 3H), 1.95-1.80 (m, 4H), 1.79-1.69 (m, 4H); Mass (ESI): 407 [M+1]; LCMS: 407 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 nm); RT 2.24 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.51 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 257
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (17 mg, 0.02 mmol) and Xantphos (33 mg, 0.05 mmol) in 1, 4-dioxane (0.4 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (80 mg, 0.37 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (154 mg, 0.75 mmol) and cesium carbonate (175 mg, 0.53 mmol) in 1, 4-dioxane (0.4 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (60 mg loading; CH3CN: 0.05% TFA (0.1/90, 15/70, 25/20, 30/10, 35/10)) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (100 mg, 56%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 9.09 (s, 1H), 7.80 (s, 1H), 7.61 (d, 2H), 7.29 (d, 1H), 7.14 (d, 1H), 6.99 (s, 1H), 3.93 (s, 2H), 3.79 (s, 3H), 2.90 (s, 3H), 2.14 (s, 3H), 1.23-1.20 (m, 2H), 0.80-0.78 (m, 2H); Mass (ESI): 379.4 [M+1]; LCMS: 379.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.39 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.36 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 258
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (21 mg, 0.02 mmol) and Xantphos (41 mg, 0.07 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.47 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (181 mg, 0.94 mmol) and cesium carbonate (215 mg, 0.66 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to obtain 130 mg of compound which was further purified by preparative HPLC (phenominex silica (250×21.2 mm, 10 μm (30 mg loading; n-hexane: CH2Cl2:MeOH (50:50) to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (90 mg, 52%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.31 (s, 1H), 7.00-7.97 (m, 1H), 7.74 (s, 1H), 7.65 (s, 1H), 7.50-7.48 (m, 1H), 7.37 (t, 1H), 7.11-7.10 (m, 1H), 3.91 (s, 2H), 2.89 (s, 3H), 2.13 (s, 3H), 1.22-1.20 (m, 2H), 0.78-0.75 (m, 2H); Mass (ESI): 367.3 [M+1]; LCMS: 367.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.01 min. 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.32 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 259
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (23 mg, 0.02 mmol) and Xantphos (43 mg, 0.07 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (120 mg, 0.50 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (113 mg, 0.55 mmol) and cesium carbonate (228 mg, 0.70 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H,8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (70 mg, 34%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 8.30 (s, 1H), 8.29 (s, 1H), 8.11 (s, 1H), 7.51 (s, 1H), 7.40 (s, 1H), 3.98 (s, 3H), 3.88 (s, 2H), 3.18 (s, 3H), 2.22 (s, 3H), 1.96-1.81 (m, 4H), 1.80-1.67 (m, 4H); Mass (ESI): 408.4 [M+1]; LCMS: 408.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.22 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.51 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 260
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (30 mg, 0.03 mmol) and Xantphos (57 mg, 0.09 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (140 mg, 0.66 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (149 mg, 0.72 mmol) and cesium carbonate (300 mg, 0.92 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to obtain 95 mg of compound which was washed with acetonitrile (2 mL), ether (2 mL) and n-pentane (2 mL) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (70 mg, 28%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 8.23 (s, 2H), 7.11 (s, 1H), 7.59 (s, 1H), 7.39 (s, 1H), 3.99 (s, 3H), 3.98 (s, 2H), 2.99 (s, 3H), 2.22 (s, 3H), 1.28-1.25 (m, 2H), 0.83-0.80 (m, 2H); Mass (ESI): 380.3 [M+1]; LCMS: 380.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.99 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.34 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 261
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methylium (120 mg, 0.56 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (230 mg, 1.12 mmol), cesium carbonate (256 mg, 0.78 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexanes to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (80 mg, 37%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.29-8.27 (m, 2H), 8.10 (s, 1H), 7.52 (s, 1H), 7.38 (s, 1H), 3.94 (s, 3H), 3.86 (s, 2H), 3.15 (s, 3H), 2.21 (s, 3H), 1.31 (s, 6H); Mass (ESI): 382.4 [M+1]; LCMS: 382.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.45 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C18, 150×4.6 mm, 5.0 μm); RT 9.61 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 262
Synthesis of 7, 7, 8-trimethyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of 7, 7, 8-trimethyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (120 mg, 0.56 mmol), 5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (196 mg, 1.12 mmol), cesium carbonate (256 mg, 0.78 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexanes to afford 7, 7, 8-trimethyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (70 mg, 35%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.40-8.35 (m, 2H), 7.92 (s, 1H), 7.85 (d, 1H), 7.56 (s, 1H), 7.23-7.21 (m, 1H), 3.88 (s, 2H), 3.14 (s, 3H), 2.24 (s, 3H), 1.33 (s, 6H); Mass (ESI): 352.4 [M+1]; LCMS: 352.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.68 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.27 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 263
Synthesis of 8′-methyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of 8′-methyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (19 mg, 0.02 mmol) and Xantphos (36 mg, 0.63 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.42 mmol), 5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (146 mg, 0.84 mmol) and cesium carbonate (191 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 8′-methyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (80 mg, 51%) as an off-white solid.[1195] 1H NMR (CD3OD, 400 MHz): δ 8.41 (d, 1H), 8.38-8.36 (m, 1H), 7.94 (s, 1H), 7.86 (dd, 1H), 7.55 (s, 1H), 7.23 (s, 1H), 3.87 (s, 2H), 3.15 (s, 3H), 2.26 (s, 3H), 1.93-1.85 (m, 4H), 1.79-1.72 (m, 4H); Mass (ESI): 378.4 [M+1]; LCMS: 378 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.10 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.46 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 264
Synthesis of N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (19 mg, 0.02 mmol) and Xantphos (36 mg, 0.63 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.42 mmol), 3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) aniline (170 mg, 0.84 mmol) and cesium carbonate (191 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (80 mg, 47%) as an off-white solid. 1H NMR (CD3OD, 400 MHz): δ 7.91 (s, 1H), 7.80 (s, 1H), 7.56-7.54 (m, 1H), 7.45 (s, 1H), 7.39 (d, 1H), 7.08 (d, 1H), 3.90 (s, 3H), 3.89 (s, 3H), 3.83 (s, 2H), 3.14 (s, 3H), 1.91-1.80 (m, 4H), 1.74-1.70 (m, 4H); Mass (ESI): 407.5 [M+1]; LCMS: 407.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.79 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.89 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Example 265
Synthesis of 8′-methyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of 8′-methyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (22 mg, 0.02 mmol) and Xantphos (41 mg, 0.07 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H,8′H-spiro [cyclopropane-1,7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.47 mmol), 5-(4-methyl-1H-imidazol-1-yl) pyridin-2-amine (164 mg, 0.94 mmol) and cesium carbonate (215 mg, 0.66 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with methanol (2×5 mL) to afford 8′-methyl-N-(5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (50 mg, 30%) as an off-white solid. 1H-NMR (CD3OD, 500 MHz): δ 8.40-8.38 (m, 2H), 7.98 (s, 1H), 7.90-7.87 (m, 1H), 7.60 (s, 1H), 7.22 (s, 1H), 3.97 (s, 2H), 2.99 (s, 3H), 2.28 (s, 3H), 1.30-1.28 (m, 2H), 0.85-0.80 (m, 2H); Mass (ESI): 350.3 [M+1]; LCMS: 349.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.87 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.22 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 50% EtOAc:hexane (Rf: 0.3).
Example 266
Synthesis of N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (19 mg, 0.02 mmol) and Xantphos (36 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.42 mmol), 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-amine (171 mg, 0.84 mmol) and cesium carbonate (191 mg, 0.58 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with 10% MeOH: CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with methanol (2×5 mL) to afford N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (20 mg, 12%) as an off-white solid. 1H NMR (CD3OD, 400 MHz): δ 8.35-8.33 (m, 1H), 8.10 (s, 1H), 8.07-8.05 (m, 1H), 8.04 (s, 1H), 7.51 (s, 1H), 3.98 (s, 3H), 3.93 (s, 3H), 3.85 (s, 2H), 3.16 (s, 3H), 1.91-1.80 (m, 4H), 1.79-1.70 (m, 4H); Mass (ESI): 408.4 [M+1]; LCMS: 408.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.40 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.66 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Example 267
Synthesis of N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (25 mg, 0.28 mmol) and Xantphos (48 mg, 0.39 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazine (120 mg, 0.56 mmol), 3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) aniline (80 mg, 0.39 mmol) and cesium carbonate (256 mg, 0.78 mmol) in 1, 4-dioxane (1.25 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (180 mg, 46%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 8.86 (s, 1H), 7.96 (s, 1H), 7.77 (s, 1H), 7.68 (s, 1H), 7.57 (s, 1H), 7.38 (d, 1H), 7.21 (d, 1H), 3.83 (s, 8H), 3.10 (s, 3H), 1.22 (s, 6H); Mass (ESI): 381.5 [M+1]; LCMS: 381 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.57 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.73 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 268
Synthesis of N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (22 mg, 0.02 mmol) and Xantphos (41 mg, 0.07 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.47 mmol), 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-amine (193 mg, 0.94 mmol) and cesium carbonate (216 mg, 0.66 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/85, 15/70, 25/20, 30/10, 35/10) to afford N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (55 mg, 31%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.31 (s, 1H), 8.10 (s, 1H), 8.01 (s, 2H), 7.51 (s, 1H), 3.99 (s, 3H), 3.92 (s, 5H), 3.00 (s, 3H), 1.27-1.21 (m, 2H), 0.82-0.79 (m, 2H); Mass (ESI): 380.4 [M+1]; LCMS: 380.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.13 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 50×2.1 mm, 1.7 μm); RT 1.46 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 269
Synthesis of N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (21 mg, 0.02 mmol) and Xantphos (41 mg, 0.07 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.47 mmol), 3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) aniline (192 mg, 0.94 mmol), cesium carbonate (215 mg, 0.66 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered, filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (40 mg, 24%) as an off-white solid. 1H NMR (CD3OD, 400 MHz): δ 7.92 (s, 1H), 7.81 (s, 1H), 7.52 (s, 2H), 7.40 (d, 1H), 7.10 (dd, 1H), 3.93-3.88 (m, 8H), 2.99 (s, 3H), 1.28-1.19 (m, 2H), 0.84-0.75 (m, 2H); Mass (ESI): 379.4 [M+1]; LCMS: 379 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.55 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.69 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 270
Synthesis of N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.6 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (2-chloro-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methylium (120 mg, 0.56 mmol), 5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-amine (230 mg, 1.12 mmol), cesium carbonate (256 mg, 0.78 mmol) in 1, 4-dioxane (0.6 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 50% EtOAc:hexanes-3% MEOH/CH2Cl2 to afford N-(5-methoxy-6-(1-methyl-1H-pyrazol-4-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (80 mg, 37%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.34 (s, 1H), 8.10 (s, 1H), 8.05 (d, 2H), 7.51 (s, 1H), 3.98 (s, 3H), 3.94 (s, 3H), 3.87 (s, 2H), 3.18 (s, 3H), 1.32 (s, 6H); Mass (ESI): 382.4 [M+1]; LCMS: 382.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.63 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.48 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 271
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (40 mg, 0.06 mmol) in 1, 4-dioxane (1.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (100 mg, 0.44 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (90 mg, 0.44 mmol) and sodium tert-butoxide (130 mg, 1.32 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 1 h in a microwave. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (25 mL) and extracted with EtOAc (2×25 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (60 mg, 35%) as an off-white solid.
1H NMR (DMSO-d6, 500 MHz): δ 9.18 (s, 1H), 7.81 (s, 1H), 7.66 (s, 1H), 7.62 (s, 1H), 7.30 (dd, 1H), 7.16 (d, 1H), 7.00 (s, 1H), 4.95 (d, 2H), 4.45 (d, 2H), 4.37 (s, 2H), 3.78 (s, 3H), 3.40 (s, 3H), 2.13 (s, 3H); Mass (ESI): 395.6 [M+1]; LCMS: 395.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.05 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 8.73 min. ACN: 5 mM Aq NH4OAc; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 272
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [oxetane-3,7′-pyrimido [5, 4-b] [1,4] oxazin]-2′-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (24 mg, 0.02 mmol) and Xantphos (48 mg, 0.08 mmol) in 1, 4-dioxane (1.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H,8′H-spiro [oxetane-3, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (120 mg, 0.52 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (108 mg, 0.52 mmol) and sodium tert-butoxide (152 mg, 1.58 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 2 h in a microwave. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [oxetane-3,7′-pyrimido [5, 4-b] [1,4] oxazin]-2′-amine (60 mg, 29%) as an off-white solid. 1H NMR (DMSO-d6, 400 MHz): δ 9.40 (s, 1H), 8.33 (s, 1H), 8.27 (s, 1H), 8.09 (br s, 1H), 7.68 (s, 1H), 7.39 (br s, 1H), 4.94 (d, 2H), 4.46 (d, 2H), 4.38 (s, 2H), 3.90 (s, 3H), 3.41 (s, 3H), 2.16 (s, 3H); Mass (ESI): 396.5 [M+1]; LCMS: 396.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.17 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 8.28 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 273
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1,4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (7 mg, 0.007 mmol) and Xantphos (13 mg, 0.02 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro[pyran-4,7′-pyrimido [5, 4-b] [1,4] oxazine] (40 mg, 0.15 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (63 mg, 0.31 mmol), cesium carbonate (72 mg, 0.21 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with MeOH (2×5 mL) and n-pentane (2×5 mL) to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (30 mg, 45%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.70 (s, 1H), 7.66-7.64 (m, 1H), 7.53 (s, 1H), 7.16-7.14 (m, 2H), 6.95 (s, 1H), 4.23 (s, 2H), 3.93-3.89 (m, 2H), 3.83 (s, 3H), 3.63 (t, 2H), 3.20 (s, 3H), 2.22-2.18 (m, 5H), 1.64-1.60 (m, 2H); Mass (ESI): 423.5 [M+1]; LCMS: 423 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.95 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C18, 50×2.1 mm, 1.7 μm); RT 1.30 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 274
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (12 mg, 0.01 mmol) and Xantphos (23 mg, 0.04 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (70 mg, 0.27 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (110 mg, 0.54 mmol), cesium carbonate (122 mg, 0.37 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with 5% MeOH: CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was washed with MeOH: CH3CN (1:1, 2×5 mL) to afford N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (21 mg, 18%) as an off-white solid. 1H NMR (400 MHz, CD3OD): δ 8.27 (s, 2H), 8.15 (s, 1H), 7.57 (s, 1H), 7.41 (s, 1H), 4.26 (s, 2H), 3.97 (s, 3H), 3.96-3.88 (m, 2H), 3.70-3.61 (m, 2H), 3.22 (s, 3H), 2.27 (s, 3H), 2.26-2.21 (m, 2H), 1.64 (d, 2H); Mass (ESI): 424.9 [M+1]; LCMS: 424 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.92 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0 μm); RT 8.73 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 275
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of 2′-chloro-8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine]
To a stirred solution of 2′-chloro-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (50 mg, 0.20 mmol) in CH3CN (0.5 mL) under an argon atmosphere were added cesium carbonate (134 mg, 0.41 mmol) and 2, 2, 2-trifluoroethyl 4-methylbenzenesulfonate (210 mg, 0.82 mmol) at room temperature. The reaction mixture was stirred at 180° C. for 1 h in a microwave. The reaction was filtered and the filtrate was concentrated in vacuo to obtain 2′-chloro-8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (15 mg, 22%) as a colorless liquid. LCMS: 323.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.30 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.5).
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (4 mg, 0.004 mmol) and Xantphos (8 mg, 0.01 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (30 mg, 0.09 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (37 mg, 0.18 mmol), cesium carbonate (42 mg, 0.12 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-(2, 2, 2-trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (5 mg, 10%) as a brown thick oil. 1H-NMR (CD3OD, 400 MHz): δ 7.99 (br s, 1H), 7.74 (s, 1H), 7.51-7.48 (m, 1H), 7.42 (d, 1H), 7.21 (d, 1H), 7.10 (br s, 1H), 4.57 (br s, 2H), 4.35 (br s, 2H), 3.98-3.89 (m, 2H), 3.86 (s, 3H), 3.67 (t, 2H), 2.28 (s, 3H), 2.09 (br s, 2H), 1.70 (d, 2H); Mass (ESI): 491.7 [M+1]; LCMS: 491.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 RT 3.89 min 5.0 mM NH4OAc in water: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C18, 150×4.6 mm, 5.0 μm); RT 1.59 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 50% EtOAc:hexane (Rf: 0.5).
Example 276
Synthesis of 3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of 3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (12 mg, 0.01 mmol) and Xantphos (23 mg, 0.04 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (70 mg, 0.26 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (37 mg, 0.18 mmol) and cesium carbonate (121 mg, 0.37 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by preparative HPLC (Column X-select CSH C18 (250×19 mm: 5μ; (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/90, 15/70, 25/30, 30/10, 35/10) to afford 3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (33 mg, 29%) as a brown solid. 1H NMR (DMSO-d6, 400 MHz): δ 9.18 (s, 1H), 7.79 (s, 1H), 7.68 (s, 1H), 7.61 (s, 1H), 7.29 (dd, 1H), 7.16 (d, 1H), 7.00 (s, 1H), 4.12 (s, 2H), 3.79 (s, 3H), 3.30-3.28 (m, 2H), 3.22 (s, 3H), 2.80-2.71 (m, 2H), 2.12 (s, 3H); Mass (ESI): 429.4 [M+1]; LCMS: 429 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.69 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); UPLC (column; Acquity UPLC BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.48 min. ACN: 0.025% Aq TFA; 0.5 mL/min.
Example 277
Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (15 mg, 0.02 mmol) and Xantphos (29 mg, 0.05 mmol) in 1, 4-dioxane (0.9 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (90 mg, 0.34 mmol), 4-(4-chloro-1H-imidazol-1-yl)-3-methoxyaniline (53 mg, 0.24 mmol) and cesium carbonate (156 mg, 0.48 mmol) in 1, 4-dioxane (0.9 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by preparative HPLC (Column YMC Actus Triart C18 (250×20 mm: 5μ; (60 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/90, 15/70, 25/30, 30/10, 35/10) to afford N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (35 mg, 23%) as an off-white solid. 1H NMR (DMSO-d6, 400 MHz): δ 9.25 (s, 1H), 7.83 (s, 1H), 7.76 (s, 1H), 7.69 (s, 1H), 7.45 (s, 1H), 7.31 (d, 1H), 7.23 (d, 1H), 4.12 (s, 2H), 3.79 (s, 3H), 3.29-3.24 (m, 2H), 3.22 (s, 3H), 2.80-2.72 (m, 2H); Mass (ESI): 449.9 [M+1]; LCMS: 449 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.00 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5 μm); RT 7.69 min. ACN: 0.05% Aq TFA; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 278
Synthesis of 3, 3-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of 3, 3-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (15 mg, 0.02 mmol) and Xantphos (29 mg, 0.05 mmol) in 1, 4-dioxane (0.9 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (90 mg, 0.34 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (49 mg, 0.24 mmol) and cesium carbonate (156 mg, 0.48 mmol) in 1, 4-dioxane (0.9 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by preparative HPLC (Column YMC Actus Triart C18 (250×20 mm; 5μ; (70 mg loading; CH3CN: 0.05% TFA (0.1/95, 2/95, 15/70, 25/30, 40/10) to afford 3, 3-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (30 mg, 20%) as an off-white solid. 1H NMR (DMSO-d6, 400 MHz): δ 9.39 (s, 1H), 8.32 (s, 1H), 8.25 (s, 1H), 8.05 (s, 1H), 7.71 (s, 1H), 7.38 (s, 1H), 4.13 (s, 2H), 3.90 (s, 3H), 3.29-3.27 (m, 1H), 3.26-3.24 (m, 1H), 3.23 (s, 3H), 2.82-2.71 (m, 2H), 2.15 (s, 3H); Mass (ESI): 430.4 [M+1]; LCMS: 430 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.58 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5 μm); RT 6.43 min. ACN: 0.05% Aq TFA; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 279
Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
To a dry vial was added a suspension of Pd2(dba)3 (29 mg, 0.03 mmol) and Xantphos (54 mg, 0.09 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2′-chloro-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazine] (150 mg, 0.62 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (131 mg, 0.69 mmol) and cesium carbonate (285 mg, 0.87 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C-18 (250×21.2 mm, 5 μm (70 mg loading; CH3CN: 0.05% TFA (0.1/80, 2/80, 15/70, 25/20, 30/10, 35/10)) to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine (50 mg, 20%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.96-7.90 (m, 1H), 7.75-7.71 (m, 1H), 7.50 (s, 1H), 7.39-7.29 (m, 2H), 7.05-7.03 (m, 1H), 3.83 (s, 2H), 3.11 (s, 3H), 2.23 (s, 3H), 1.90-1.80 (m, 4H), 1.79-1.70 (m, 4H); Mass (ESI): 395.5 [M+1]; LCMS: 395.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.18 min. 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB-C18 (150×4.6 mm, 5.0 μm); RT 11.16 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 280
Synthesis of 2-chloro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine




Synthesis of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine
To a stirred solution of 2, 4-dichloropyrimidin-5-ol (7 g, 42.68 mmol) in acetone (100 mL) under an argon atmosphere were added 1-(chloromethyl)-4-methoxybenzene (10 g, 64.02 mmol), potassium carbonate (14.7 g, 106.70 mmol) and sodium iodide (600 mg, 4.26 mmol) at room temperature. The reaction mixture was stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 10% EtOAc:hexanes to afford 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (6.2 g, 51%) as a pale yellow solid. 1H-NMR (CDCl3, 500 MHz): δ 8.19 (s, 1H), 7.34 (d, 2H), 6.93 (d, 2H), 5.19 (s, 2H), 3.80 (s, 3H); TLC: 30% EtOAc:hexane (Rf: 0.6).
Synthesis of (1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) pyrrolidin-2-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (100 mg, 0.35 mmol) in 2-methyl THF (1 mL) under an argon atmosphere were added pyrrolidin-2-ylmethanol (40 mg, 0.39 mmol) and triethylamine (0.12 mL, 0.87 mmol) at room temperature. The reaction mixture was stirred at 70° C. for 8 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude was purified by column chromatography using 50% EtOAc:hexanes to afford (1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) pyrrolidin-2-yl) methanol (120 mg, 98%) as a colorless oil. 1H-NMR (CDCl3, 500 MHz): δ 7.67 (s, 1H), 7.41 (d, 2H), 6.91 (d, 2H), 4.90 (s, 2H), 4.48-4.41 (m, 1H), 3.88-3.78 (m, 5H), 3.69-3.60 (m, 2H), 3.21 (br s, 1H), 2.00-1.80 (m, 4H); LCMS: 350.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.91 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-chloro-4-(2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol
To a stirred solution of (1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) pyrrolidin-2-yl) methanol (120 mg, 0.34 mmol) in CH2Cl2 (2 mL) under an argon atmosphere was added trifluoroacetic acid (1 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with a saturated sodium bicarbonate solution (20 mL) and extracted with 5% MeOH/CH2Cl2 (2×10 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 2-chloro-4-(2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol (50 mg 64%) as a white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.80 (s, 1H), 7.50 (s, 1H), 4.79 (br s, 1H), 4.50-4.40 (m, 1H), 3.75-3.69 (m, 1H), 3.67-3.60 (m, 1H), 3.59-3.50 (m, 1H), 2.00-1.71 (m, 4H); LCMS: 230.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.06 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of 2-chloro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine
To a stirred solution of 2-chloro-4-(2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol (1.8 g, 0.56 mmol) in THF (20 mL) under an argon atmosphere were added triphenylphosphine (2.2 g, 0.85 mmol) and diisopropylazodicarboxylate (1.7 mL, 0.85 mmol) at room temperature. The reaction mixture was stirred at 70° C. for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford 2-chloro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (800 mg, 66%) as an off-white solid. 1H-NMR (CDCl3, 500 MHz): δ 7.68 (d, 1H), 4.52 (d, 1H), 3.78-3.70 (m, 2H), 3.60-3.56 (m, 1H), 3.39 (t, 1H), 2.20-2.10 (m, 2H), 2.08-1.99 (m, 1H), 1.53-1.40 (m, 1H); LCMS: 212.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.73 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexanes (Rf: 0.5).
Example 281
Synthesis of (S)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine




Synthesis of (S)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-2-methylpyrrolidin-2-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (1.5 g, 5.26 mmol) in isopropyl alcohol (10 mL) under an argon atmosphere were added diisopropylethylamine (9.5 mL, 52.63 mmol) and (S)-(2-methylpyrrolidin-2-yl) methanol hydrochloride (957 mg, 6.31 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 30-50% EtOAc:hexanes to afford (S)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-2-methylpyrrolidin-2-yl) methanol (1.1 g, 57%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.79 (s, 1H), 7.35 (d, 2H), 6.94 (d, 2H), 4.93 (s, 2H), 4.70 (t, 1H), 4.00-3.84 (m, 1H), 3.77 (s, 3H), 3.75-3.70 (m, 1H), 3.60-3.53 (m, 1H), 2.11-2.03 (m, 1H), 1.80-1.70 (m, 2H), 1.57-1.50 (m, 1H), 1.39 (s, 3H); LCMS: 364.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.10 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.2).
Synthesis of (S)-2-chloro-4-(2-(hydroxymethyl)-2-methylpyrrolidin-1-yl) pyrimidin-5-ol
To a stirred solution of (S)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-2-methylpyrrolidin-2-yl) methanol (1.1 g, 3.02 mmol) in CH2Cl2 (80 mL) under an argon atmosphere was added trifluoroacetic acid (8 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 3 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (30 mL) and extracted with 20% MeOH: CH2Cl2 (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 70% EtOAc:hexanes-EtOAc to afford (S)-2-chloro-4-(2-(hydroxymethyl)-2-methylpyrrolidin-1-yl) pyrimidin-5-ol (485 mg, 65%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.60 (s, 1H), 7.49 (s, 1H), 4.72 (t, 1H), 4.05-3.99 (m, 1H), 3.98-3.92 (m, 1H), 3.87-3.80 (m, 1H), 3.63-3.58 (m, 1H), 2.15-2.08 (m, 1H), 1.80-1.71 (m, 2H), 1.58-1.50 (m, 1H), 1.40 (s, 3H); LCMS: 244 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.27 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.2).
Synthesis of (S)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-(2-(hydroxymethyl)-2-methylpyrrolidin-1-yl) pyrimidin-5-ol (950 mg, 3.89 mmol) in dry THF (50 mL) under an argon atmosphere were added triphenylphosphine (1.2 g, 4.67 mmol) and diisopropylazodicarboxylate (944 mg, 4.67 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes-EtOAc to afford (S)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (750 mg, 85%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 4.30-4.27 (m, 1H), 3.78-3.70 (m, 1H), 3.68-3.60 (m, 1H), 3.35-3.30 (m, 1H), 2.20-2.10 (m, 2H), 1.98-1.90 (m, 1H), 1.70-1.60 (m, 1H), 1.27 (s, 3H); LCMS: 226 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.23 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.77 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=5.28 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: +58.30 (c=0.25, CH2Cl2); TLC: EtOAc (Rf: 0.7).
Example 282
Synthesis of (R)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine




Synthesis of (R)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-2-methylpyrrolidin-2-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (1.5 g, 5.26 mmol) in isopropyl alcohol (10 mL) under an argon atmosphere were added (R)-(2-methylpyrrolidin-2-yl) methanol hydrochloride (957 mg, 0.95 mmol) and diisopropylethylamine (9.5 mL, 52.63 mmol) at room temperature. The reaction mixture was stirred at 130° C. for 16 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 30-50% EtOAc:hexanes to afford (R)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-2-methylpyrrolidin-2-yl) methanol (1.1 g, 57%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 7.79 (s, 1H), 7.35 (d, 2H), 6.93 (d, 2H), 4.92 (s, 2H), 4.70 (t, 1H), 4.00-3.95 (m, 1H), 3.94-3.88 (m, 1H), 3.75 (s, 3H), 3.75-3.70 (m, 1H), 3.60-3.53 (m, 1H), 2.13-2.08 (m, 1H), 1.80-1.70 (m, 2H), 1.54-1.49 (m, 1H), 1.37 (s, 3H); LCMS: 364.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.07 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 30% EtOAc:hexane (Rf: 0.2).
Synthesis of (R)-2-chloro-4-(2-(hydroxymethyl)-2-methylpyrrolidin-1-yl) pyrimidin-5-ol
To a stirred solution of (R)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-2-methylpyrrolidin-2-yl) methanol (1.1 g, 3.02 mmol) in CH2Cl2 (80 mL) under an argon atmosphere was added trifluoroacetic acid (7.8 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 3 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (30 mL) and extracted with CH2Cl2 (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 70% EtOAc:hexanes-EtOAc to afford (R)-2-chloro-4-(2-(hydroxymethyl)-2-methylpyrrolidin-1-yl) pyrimidin-5-ol (480 mg, 65%) as an off-white solid. 1H-NMR (DMSO-d6, 400 MHz): δ 9.60 (s, 1H), 7.49 (s, 1H), 4.71 (t, 1H), 4.02-3.99 (m, 1H), 3.98-3.90 (m, 1H), 3.87-3.80 (m, 1H), 3.62-3.58 (m, 1H), 2.11-2.05 (m, 1H), 1.80-1.70 (m, 2H), 1.55-1.50 (m, 1H), 1.35 (s, 3H); LCMS: 244 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.28 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.2).
Synthesis of (R)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine
To a stirred solution of (R)-2-chloro-4-(2-(hydroxymethyl)-2-methylpyrrolidin-1-yl) pyrimidin-5-ol (950 mg, 3.89 mmol) in dry THF (50 mL) under an argon atmosphere were added triphenylphosphine (1.2 g, 4.67 mmol) and diisopropylazodicarboxylate (944 mg, 4.67 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with cold water (30 mL) and extracted with EtOAc (2×30 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes-EtOAc to afford (R)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (770 mg, 87%) as an off-white solid. 1H-NMR (CDCl3, 400 MHz): δ 7.70 (s, 1H), 4.30-4.28 (m, 1H), 3.78-3.70 (m, 1H), 3.67-3.60 (m, 1H), 3.35-3.30 (m, 1H), 2.21-2.10 (m, 2H), 1.96-1.90 (m, 1H), 1.69-1.60 (m, 1H), 1.28 (s, 3H); LCMS: 226 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.19 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.78 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 97.4% RT=5.90 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −50.16 (c=0.25, CH2Cl2); TLC: EtOAc (Rf: 0.7).
Example 283
Synthesis of (S)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of (R)-(4-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) morpholin-3-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (500 mg, 1.75 mmol) in isopropyl alcohol (5 mL) under an argon atmosphere were added diisopropylethylamine (5 mL) and (R)-morpholin-3-ylmethanol hydrochloride (295 mg, 1.92 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with a sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30-40% EtOAc:hexanes to afford (R)-(4-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) morpholin-3-yl) methanol (400 mg, 62%) as a colorless liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.96 (s, 1H), 7.39 (d, 2H), 6.95 (d, 2H), 5.04 (s, 2H), 4.83 (t, 1H), 4.70-4.64 (m, 1H), 4.09-4.01 (m, 1H), 3.86-3.81 (m, 2H), 3.76 (s, 3H), 3.69-3.60 (m, 2H), 3.54-3.42 (m, 2H), 3.26-3.20 (m, 1H); LCMS: 366.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.75 min 5 mM Aq NH4OAc: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of (R)-2-chloro-4-(3-(hydroxymethyl) morpholino) pyrimidin-5-ol
To a stirred solution of (R)-(4-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) morpholin-3-yl) methanol (400 mg, 1.09 mmol) in CH2Cl2 (5 mL) under an argon atmosphere was added trifluoroacetic acid (2 mL) at 0° C. The reaction mixture was stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-3% MeOH: CH2Cl2 to afford (R)-2-chloro-4-(3-(hydroxymethyl) morpholino) pyrimidin-5-ol (200 mg, 75%) as a colorless liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 10.25 (br s, 1H), 7.62 (s, 1H), 4.86 (br s, 1H), 4.70-4.65 (m, 1H), 4.15-4.10 (m, 1H), 3.90-3.82 (m, 2H), 3.70-3.63 (m, 1H), 3.43 (t, 3H), 3.21-3.18 (m, 1H); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of (S)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (R)-2-chloro-4-(3-(hydroxymethyl) morpholino) pyrimidin-5-ol (120 mg, 0.48 mmol) in THF (2 mL) under an argon atmosphere were added triphenylphosphine (154 mg, 0.97 mmol) and diisopropylazodicarboxylate (118 mg, 0.97 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford (S)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine (80 mg, 72%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.75 (s, 1H), 4.80-4.77 (m, 1H), 4.38-4.30 (m, 1H), 3.99-3.81 (m, 3H), 3.70-3.65 (m, 1H), 3.50-3.45 (m, 1H), 3.15 (t, 1H), 3.00 (t, 1H); LCMS: 228.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.85 min 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.5).
Example 284
Synthesis of (R)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine




Synthesis of (S)-(4-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) morpholin-3-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (500 mg, 1.75 mmol) in isopropyl alcohol (5 mL) under an argon atmosphere were added diisopropylethylamine (5 mL) and (S)-morpholin-3-ylmethanol hydrochloride (295 mg, 1.92 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with a sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 30-40% EtOAc:hexane to afford (S)-(4-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) morpholin-3-yl) methanol (430 mg, 67%) as a colorless liquid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.96 (s, 1H), 7.39 (d, 2H), 6.95 (d, 2H), 5.04 (s, 2H), 4.83 (t, 1H), 4.70-4.64 (m, 1H), 4.09-4.01 (m, 1H), 3.86-3.81 (m, 2H), 3.76 (s, 3H), 3.69-3.60 (m, 2H), 3.54-3.42 (m, 2H), 3.26-3.20 (m, 1H); LCMS: 366.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.75 min 5 mM Aq NH4OAc: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.3).
Synthesis of (S)-2-chloro-4-(3-(hydroxymethyl) morpholino) pyrimidin-5-ol
To a stirred solution of (S)-(4-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) morpholin-3-yl) methanol (430 mg, 1.17 mmol) in CH2Cl2 (5 mL) under an argon atmosphere was added trifluoroacetic acid (2 mL) at 0° C. The reaction mixture was warmed to room temperature stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2-3% MeOH: CH2Cl2 to afford (S)-2-chloro-4-(3-(hydroxymethyl) morpholino) pyrimidin-5-ol (230 mg, 79%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 10.20 (br s, 1H), δ 7.62 (s, 1H), 4.86 (br s, 1H), 4.70-4.65 (m, 1H), 4.15-4.10 (m, 1H), 3.90-3.82 (m, 2H), 3.70-3.63 (m, 1H), 3.43 (t, 3H), 3.21-3.18 (m, 1H); TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of (R)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-(3-(hydroxymethyl) morpholino) pyrimidin-5-ol (200 mg, 0.81 mmol) in THF (2 mL) under an argon atmosphere were added triphenylphosphine (255 mg, 0.97 mmol) and diisopropylazodicarboxylate (207 mg, 0.97 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford (R)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 55%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 7.75 (s, 1H), 4.80-4.77 (m, 1H), 4.38-4.30 (m, 1H), 3.99-3.81 (m, 3H), 3.70-3.65 (m, 1H), 3.50-3.45 (m, 1H), 3.15 (t, 1H), 3.00 (t, 1H); LCMS: 228.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.85 min 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.5).
Example 285
Synthesis of N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine







Synthesis of 1-(tert-butyl) 2-(4-nitrophenyl) (S)-4, 4-difluoropyrrolidine-1, 2-dicarboxylate
To a stirred solution of (S)-1-(tert-butoxycarbonyl)-4,4-difluoropyrrolidine-2-carboxylic acid (2.05 g, 8.16 mmol) in CH2Cl2 (20 mL) under an argon atmosphere were added DCC (2.01 g, 9.80 mmol) and 4-nitrophenol (1.13 g, 8.16 mmol) at 0° C. The reaction mixture was stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was filtered. The filtrate was washed with a saturated sodium bicarbonate solution (2×100 mL), ammonium chloride solution (50 mL), and water (50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(tert-butyl) 2-(4-nitrophenyl) (S)-4, 4-difluoropyrrolidine-1, 2-dicarboxylate (3 g, 99%) as an off-white solid used in the next step without further purification. 1H-NMR (400 MHz, CDCl3): δ 8.32-8.27 (m, 2H), 7.30-7.28 (m, 2H), 4.80-4.70 (m, 1H), 3.95-3.80 (m, 2H), 2.90-2.80 (m, 1H), 2.70-2.60 (m, 1H), 1.50 (s, 9H): TLC: 20% EtOAc:hexanes (Rf: 0.7).
Synthesis of 1-(tert-butyl) 2-(4-nitrophenyl) 4, 4-difluoropyrrolidine-1, 2-dicarboxylate
To a stirred solution of 1-(tert-butyl) 2-(4-nitrophenyl) (S)-4, 4-difluoropyrrolidine-1, 2-dicarboxylate (3 g, 8.06 mmol) in THF (30 mL) under an argon atmosphere was added DBU (1.8 g, 12.09 mmol) at room temperature. The reaction mixture was stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(tert-butyl) 2-(4-nitrophenyl) 4, 4-difluoropyrrolidine-1, 2-dicarboxylate (3 g, 99%) as an off-white solid used in the next step without further purification. TLC: 20% EtOAc:hexanes (Rf: 0.7).
Synthesis of 1-(tert-butoxycarbonyl)-4, 4-difluoropyrrolidine-2-carboxylic acid
To a stirred solution of 1-(tert-butyl) 2-(4-nitrophenyl) 4, 4-difluoropyrrolidine-1, 2-dicarboxylate (3 g, 8.06 mmol) in THF (161 mL) under an argon atmosphere was added a 0.1 N sodium hydroxide solution (161.29 mL, 161.2 mmol) at room temperature. The reaction mixture was stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was acidified with citric acid solution up to pH=4 and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain 1-(tert-butoxycarbonyl)-4, 4-difluoropyrrolidine-2-carboxylic acid (3 g, crude) as an off-white solid used in the next step without further purification. 1H NMR (500 MHz, CDCl3): δ 4.50-4.43 (m, 1H), 3.80-3.73 (m, 2H), 2.88-2.78 (m, 1H), 2.50-2.348 (m, 1H), 1.42 (s, 9H): TLC: 50% EtOAc:hexanes (Rf: 0.2).
Synthesis of 1-(tert-butyl) 2-methyl 4, 4-difluoropyrrolidine-1, 2-dicarboxylate
To a stirred solution of 1-(tert-butoxycarbonyl)-4, 4-difluoropyrrolidine-2-carboxylic acid (3 g, 11.95 mmol) in acetone (30 mL) under an argon atmosphere were added potassium carbonate (1.64 g, 11.95 mmol) and methyl iodide (1.86 g, 13.10 mmol) at room temperature. The reaction mixture was stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was filtered and washed with EtOAc (100 mL). The filtrate was concentrated in vacuo to obtain 1-(tert-butyl) 2-methyl 4, 4-difluoropyrrolidine-1, 2-dicarboxylate (1.2 g, 38%) as a yellow liquid used in the next step without further purification. 1H NMR (500 MHz, CDCl3): δ 4.50-4.46 (m, 1H), 3.88-3.82 (m, 2H), 3.78 (s, 3H), 2.75-2.68 (m, 1H), 2.51-2.44 (m, 1H), 1.49 (s, 9H): TLC: 20% EtOAc:hexanes (Rf: 0.5).
Synthesis of tert-butyl 4, 4-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate
To a stirred solution of 1-(tert-butyl) 2-methyl 4, 4-difluoropyrrolidine-1, 2-dicarboxylate (1.2 g, 4.52 mmol) in dry THF (12 mL) under an argon atmosphere was added lithium aluminum hydride (172 mg, 4.52 mmol) at 0° C. The reaction mixture was stirred for 30 min. After consumption of starting material (monitored by TLC), the reaction mixture was filtered and washed with EtOAc (100 mL). The filtrate was concentrated in vacuo to obtain tert-butyl 4, 4-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate (1 g, 93%) as a colorless oil used in the next step without further purification. 1H-NMR (CDCl3 500 MHz): δ 4.20-4.13 (m, 1H), 3.82-3.65 (m, 2H), 2.53-2.49 (m, 1H), 2.16-2.12 (m, 1H), 1.63-1.61 (m, 2H), 1.45 (s, 9H), 1.29-1.26 (m, 1H); TLC: 20% EtOAc:hexanes (Rf: 0.3).
Synthesis of (4, 4-difluoropyrrolidin-2-yl) methanol hydrochloride
To a stirred solution of tert-butyl 4, 4-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate (1 g, 4.21 mmol) in CH2Cl2 (5 mL) under an argon atmosphere was added HCl in 1, 4-dioxane (5 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 3 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was washed with n-heptane (2×25 mL) to afford (4, 4-difluoropyrrolidin-2-yl) methanol hydrochloride (560 mg, 97%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 9.87 (br s, 1H), 5.55 (br s, 1H), 3.89-3.87 (m, 1H), 3.75-3.61 (m, 3H), 2.63-2.60 (m, 1H), 2.37-2.33 (m, 1H); TLC: 30% EtOAc:hexanes (Rf: 0.1).
Synthesis of (1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-4, 4-difluoropyrrolidin-2-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (560 mg, 4.08 mmol) in 1, 4-dioxane (3 mL) under an argon atmosphere were added diisopropylethylamine (3 mL, 16.35 mmol) and (4, 4-difluoropyrrolidin-2-yl) methanol hydrochloride (1.16 g, 4.08 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexanes to afford (1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-4, 4-difluoropyrrolidin-2-yl) methanol (1.1 g, 70%) as an off-white solid. 1H NMR (500 MHz, CDCl3): δ 7.78 (s, 1H), 7.30 (d, 2H), 6.94 (d, 2H), 4.95 (s, 2H), 4.72-4.70 (m, 1H), 4.24-4.22 (m, 1H), 4.06-4.03 (m, 1H), 3.84 (s, 3H), 3.81-3.75 (m, 2H), 2.51-2.37 (m, 2H); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Synthesis of 2-chloro-4-(4, 4-difluoro-2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol
To a stirred solution of (1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-4, 4-difluoropyrrolidin-2-yl) methanol (1.1 g, 2.84 mmol) in CH2Cl2 (15 mL) under an argon atmosphere was added trifluoroacetic acid (1.3 g, 11.39 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 3 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The aqueous layer was acidified with citric acid solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the 2-chloro-4-(4, 4-difluoro-2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol (1.1 g, crude) as an off-white solid used in the next step without further purification. LCMS: 265.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.58 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 60% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine
To a stirred solution of 2-chloro-4-(4, 4-difluoro-2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol (800 mg, 3.01 mmol) in THF (10 mL) under an argon atmosphere were added triphenylphosphine (1.18 g, 4.52 mmol) and diisopropylazodicarboxylate (914 mg, 4.52 mmol) at 0° C. The reaction mixture was stirred for 5 min. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexane to afford 2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (1.2 g, 99%) as an off-white solid. 1H NMR (400 MHz, CDCl3): δ 7.78 (s, 1H), 5.00-4.92 (m, 1H), 4.57-4.54 (m, 1H), 4.20-4.10 (m, 2H), 3.99-3.90 (m, 1H), 3.59-3.53 (m, 1H), 2.68-2.60 (m, 1H); LCMS: 247.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 50% EtOAc:hexane (Rf: 0.7).
Example 286
Synthesis of 2-chloro-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one




Synthesis of methyl 5-oxopyrrolidine-2-carboxylate
To a stirred solution of 5-oxopyrrolidine-2-carboxylic acid (10 g, 77.51 mmol) in MeOH (80 mL) under an argon atmosphere was added thionyl chloride (8.3 mL, 116.0 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The residue was diluted with a saturated sodium bicarbonate solution (200 mL) and extracted with 5% MeOH: CH2Cl2 (2×200 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain methyl 5-oxopyrrolidine-2-carboxylate (9 g, 82%) as a colorless oil. TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Synthesis of 5-(hydroxymethyl) pyrrolidin-2-one
To a stirred solution of methyl 5-oxopyrrolidine-2-carboxylate (9 g, 62.93 mmol) in MeOH (150 mL) under an argon atmosphere was added sodium borohydride (3.6 g, 95.2 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with concentrated HCl at 0° C., filtered, and washed with MeOH (2×50 mL). The filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 10% MeOH: CH2Cl2 to afford 5-(hydroxymethyl) pyrrolidin-2-one (6 g, 83%) as a colorless oil. LCMS: 116 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 0.44 min 5 mM NH4OAc in water: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Synthesis of 5-(((tert-butyldimethylsilyl) oxy) methyl) pyrrolidin-2-one
To a stirred solution of 5-(hydroxymethyl) pyrrolidin-2-one (6 g, 52.17 mmol) in CH2Cl2 (100 mL) under an argon atmosphere were added imidazole (5.3 g, 78.26 mmol) and TBSCl (10.2 g, 67.82 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford 5-(((tert-butyldimethylsilyl) oxy) methyl) pyrrolidin-2-one (9 g, 76%) as a colorless liquid. 1H-NMR (CDCl3, 500 MHz): δ 5.90 (br s, 1H), 3.90-3.80 (m, 1H), 3.62 (dd, 1H), 3.43 (dt, 1H), 2.38-2.31 (m, 2H), 2.20-2.15 (m, 1H), 1.79-1.80 (m, 1H), 1.87 (s, 9H), 0.04 (s, 6H); LCMS: 230 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.48 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 5-(((tert-butyldimethylsilyl) oxy) methyl)-1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) pyrrolidin-2-one
To a stirred solution of 5-(((tert-butyldimethylsilyl) oxy) methyl) pyrrolidin-2-one (2 g, 8.73 mmol) in THF (15 mL) under an argon atmosphere were added 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (2.5 g, 8.73 mmol), (±) BINAP (814 mg, 1.31 mmol) and cesium carbonate (3.9 g, 12.22 mmol) and purged with argon for 15 min. Then Pd2(dba)3 (399 mg, 0.43 mmol) was added to the reaction mixture at room temperature. The reaction mixture was stirred at 100° C. for 4 h. After consumption of starting material (monitored by TLC), the reaction mixture was filtered and washed with EtOAc (2×50 mL). The filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 30% EtOAc:hexanes to afford 5-(((tert-butyldimethylsilyl) oxy) methyl)-1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) pyrrolidin-2-one (1.5 g, 24%) as a pale yellow oil. 1H-NMR (CDCl3, 500 MHz): δ 8.22 (s, 1H), 7.39 (d, 2H), 6.90 (d, 2H), 5.10 (s, 2H), 4.57-4.55 (m, 1H), 3.80 (s, 3H), 3.79-3.77 (m, 1H), 3.63 (dd, 1H), 2.70-2.63 (m, 1H), 2.50-2.42 (m, 1H), 2.33-2.25 (m, 1H), 2.10-2.00 (m, 1H), 0.76 (s, 9H), 0.08 (s, 6H); LCMS: 478 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 4.64 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 10% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-5-(hydroxymethyl) pyrrolidin-2-one
To a stirred solution of 5-(((tert-butyldimethylsilyl) oxy) methyl)-1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl) pyrrolidin-2-one (1.5 g, 3.14 mmol) in THF (20 mL) under an argon atmosphere was added tert-butyl ammonium fluoride (3.7 mL, 3.77 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 30 min. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford 1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-5-(hydroxymethyl) pyrrolidin-2-one (1 g, 88%) as a yellow solid. 1H-NMR (DMSO-d6, 400 MHz): δ 8.20 (s, 1H), 7.71 (s, 1H), 7.31 (d, 2H), 6.90 (d, 2H), 5.10 (s, 2H), 4.30-4.20 (m, 2H), 3.90-3.86 (m, 1H), 3.70 (s, 3H), 2.25-2.00 (m, 3H), 1.86-1.80 (m, 1H); LCMS: 363.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.08 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of 1-(2-chloro-5-hydroxypyrimidin-4-yl)-5-(hydroxymethyl) pyrrolidin-2-one
To a stirred solution of 1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-5-(hydroxymethyl) pyrrolidin-2-one (1 g, 2.75 mmol) in CH2Cl2 (20 mL) under an argon atmosphere was added trifluoroacetic acid (1 mL) at 0° C. The reaction mixture was warmed at room temperature and stirred for 2 h. After consumption of starting material (monitored by TLC), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to afford 1-(2-chloro-5-hydroxypyrimidin-4-yl)-5-(hydroxymethyl) pyrrolidin-2-one (200 mg, 30%) as a pale yellow solid. LCMS: 243.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.12 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Synthesis of (1-(2-chloro-5-hydroxypyrimidin-4-yl)-5-oxopyrrolidin-2-yl) methyl methanesulfonate
To a stirred solution of 1-(2-chloro-5-hydroxypyrimidin-4-yl)-5-(hydroxymethyl) pyrrolidin-2-one (200 mg, 0.82 mmol) in CH2Cl2 (10 mL) under an argon atmosphere were added triethylamine (0.16 mL, 1.64 mmol) and methanesulfonyl chloride (0.09 mL, 1.23 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 1 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain (1-(2-chloro-5-hydroxypyrimidin-4-yl)-5-oxopyrrolidin-2-yl) methyl methanesulfonate (220 mg, crude) as a yellow solid used in the next step without further purification. TLC: 10% MeOH/CH2Cl2 (Rf: 0.6).
Synthesis of 2-chloro-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one
To a stirred solution of (1-(2-chloro-5-hydroxypyrimidin-4-yl)-5-oxopyrrolidin-2-yl) methyl methanesulfonate (220 mg, 0.68 mmol) in CH3CN (10 mL) under an argon atmosphere was added cesium carbonate (666 mg, 2.04 mmol) at room temperature. The reaction mixture was stirred at 70° C. for 6 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 2% MeOH: CH2Cl2 to afford 2-chloro-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one (70 mg, 45%) as a pale yellow solid. 1H-NMR (CDCl3, 500 MHz): δ 8.20 (s, 1H), 4.29 (dd, 1H), 4.16-4.06 (m, 1H), 3.83 (t, 1H), 2.73-2.60 (m, 2H), 2.41-2.37 (m, 1H), 1.80-1.72 (m, 1H); LCMS: 225.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.58 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.58 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.6).
Example 287
Synthesis of (S)-2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine




Synthesis of 1-(tert-butyl) 2-methyl (S)-4, 4-difluoropyrrolidine-1, 2-dicarboxylate
To a stirred solution of (S)-1-(tert-butoxycarbonyl)-4, 4-difluoropyrrolidine-2-carboxylic acid (1 g, 3.98 mmol) in acetone (10 mL) under an argon atmosphere were added potassium carbonate (824 mg, 5.97 mmol) and methyl iodide (848 mg, 5.97 mmol) at room temperature. The reaction mixture was stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was filtered and washed with EtOAc (100 mL). The filtrate was concentrated in vacuo to obtain 1-(tert-butyl) 2-methyl (S)-4, 4-difluoropyrrolidine-1, 2-dicarboxylate (1 g, 95%) as a yellow liquid used in the next step without further purification. 1H NMR (500 MHz, CDCl3): δ 4.50-4.46 (m, 1H), 3.88-3.82 (m, 2H), 3.78 (s, 3H), 2.75-2.68 (m, 1H), 2.51-2.44 (m, 1H), 1.49 (s, 9H): TLC: 20% EtOAc:hexanes (Rf: 0.5).
Synthesis of tert-butyl (S)-4, 4-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate
To a stirred solution of 1-(tert-butyl) 2-methyl (S)-4, 4-difluoropyrrolidine-1, 2-dicarboxylate (2 g, 7.54 mmol) in dry THF (20 mL) under an argon atmosphere was added lithium aluminum hydride (286 mg, 7.54 mmol) at 0° C. The reaction mixture was stirred for 30 min. After consumption of starting material (monitored by TLC), the reaction mixture was filtered, washed with EtOAc (100 mL) and the filtrate was concentrated in vacuo to obtain tert-butyl (S)-4, 4-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate (1.7 g, 95%) as a colorless oil used in the next step without further purification. 1H-NMR (CDCl3 500 MHz): δ 4.20-4.13 (m, 1H), 3.82-3.65 (m, 2H), 2.53-2.49 (m, 1H), 2.16-2.12 (m, 1H), 1.63-1.61 (m, 2H), 1.45 (s, 9H), 1.29-1.26 (m, 1H); TLC: 20% EtOAc:hexanes (Rf: 0.3).
Synthesis of (S)-(4, 4-difluoropyrrolidin-2-yl) methanol hydrochloride
To a stirred solution of tert-butyl (S)-4, 4-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate (1.7 g, 7.17 mmol) in CH2Cl2 (10 mL) under an argon atmosphere was added 4N HCl in 1, 4-dioxane (10 mL) at 0° C. The reaction mixture was warmed to room temperature and stirred for 3 h. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was washed with n-heptane (2×25 mL) to afford (S)-(4, 4-difluoropyrrolidin-2-yl) methanol hydrochloride (1.2 g, 97%) as an off-white solid used in the next step without further purification. 1H-NMR (DMSO-d6, 500 MHz): δ 9.87 (br s, 1H), 5.55 (br s, 1H), 3.89-3.87 (m, 1H), 3.75-3.61 (m, 3H), 2.63-2.60 (m, 1H), 2.37-2.33 (m, 1H); TLC: 30% EtOAc:hexanes (Rf: 0.1).
Synthesis of (S)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-4, 4-difluoropyrrolidin-2-yl) methanol
To a stirred solution of 2, 4-dichloro-5-((4-methoxybenzyl) oxy) pyrimidine (1.5 g, 5.26 mmol) in 1, 4-dioxane (4 mL) under an argon atmosphere were added diisopropylethylamine (3.8 mL, 21.01 mmol) and (S)-(4, 4-difluoropyrrolidin-2-yl) methanol hydrochloride (910 mg, 5.26 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of starting material (monitored by TLC), the volatile components were evaporated in vacuo. The crude material was purified by column chromatography using 40% EtOAc:hexanes to afford (S)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-4, 4-difluoropyrrolidin-2-yl) methanol (1.2 g, 59%) as an off-white solid. 1H NMR (500 MHz, CDCl3): δ 7.78 (s, 1H), 7.30 (d, 2H), 6.94 (d, 2H), 4.95 (s, 2H), 4.72-4.70 (m, 1H), 4.24-4.22 (m, 1H), 4.06-4.03 (m, 1H), 3.84 (s, 3H), 3.81-3.75 (m, 2H), 2.51-2.37 (m, 2H); TLC: 50% EtOAc:hexanes (Rf: 0.4).
Synthesis of (S)-2-chloro-4-(4, 4-difluoro-2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol
To a stirred solution of (S)-(1-(2-chloro-5-((4-methoxybenzyl) oxy) pyrimidin-4-yl)-4, 4-difluoropyrrolidin-2-yl) methanol (1.2 g, 3.10 mmol) in CH2Cl2 (15 mL) under an argon atmosphere was added trifluoroacetic acid (1.4 g, 12.43 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 3 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The aqueous layer was acidified with a citric acid solution (100 mL) and extracted with EtOAc (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to obtain the (S)-2-chloro-4-(4, 4-difluoro-2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol (800 mg, 97%) as an off-white solid used in the next step without further purification. LCMS: 265.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.58 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 60% EtOAc:hexanes (Rf: 0.3).
Synthesis of (S)-2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine
To a stirred solution of (S)-2-chloro-4-(4, 4-difluoro-2-(hydroxymethyl) pyrrolidin-1-yl) pyrimidin-5-ol (800 mg, 3.01 mmol) in THF (10 mL) under an argon atmosphere were added triphenylphosphine (1.18 g, 4.52 mmol) and diisopropylazodicarboxylate (914 mg, 4.52 mmol) at 0° C. The reaction mixture was stirred for 5 min. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford (S)-2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (740 mg, 99%) as an off-white solid. 1H NMR (400 MHz, CDCl3): δ 7.78 (s, 1H), 5.00-4.92 (m, 1H), 4.57-4.54 (m, 1H), 4.20-4.10 (m, 2H), 3.99-3.90 (m, 1H), 3.59-3.53 (m, 1H), 2.68-2.60 (m, 1H); LCMS: 247.8 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.91 min 0.05% Aq TFA: ACN; 0.80 mL/min); TLC: 2% MeOH/CH2Cl2 (Rf: 0.3).
Example 288
Synthesis of 2-chloro-7, 7-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4]oxazine




Synthesis of tert-butyl 2, 2-difluoro-3-oxopyrrolidine-1-carboxylate
To a stirred solution of 1-(tert-butyl) 2-methyl 3-oxopyrrolidine-1, 2-dicarboxylate (2 g, 7.78 mmol) in CH2Cl2 (40 mL) under an argon atmosphere was added DAST (3.75 g, 23.34 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (100 mL) and extracted with CH2Cl2 (2×100 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 5% EtOAc:hexanes to afford tert-butyl 2, 2-difluoro-3-oxopyrrolidine-1-carboxylate (1.4 g, 65%) as a pale yellow liquid. 1H-NMR (DMSO-d6, 500 MHz, CDCl3): δ 4.50-4.45 (m, 1H), 4.21-4.13 (m, 2H), 3.60-3.47 (m, 1H), 2.41-2.32 (m, 1H), 1.40 (s, 9H), 1.21-1.17 (m, 3H): TLC: 20% EtOAc:hexanes (Rf: 0.7).
Synthesis of 1-(tert-butyl) 2-methyl 3, 3-difluoropyrrolidine-1, 2-dicarboxylate
To a stirred solution of tert-butyl 2, 2-difluoro-3-oxopyrrolidine-1-carboxylate (1.5 g, 5.37 mmol) in THF (30 mL) under an argon atmosphere was added lithium borohydride (225 mg, 10.75 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 15% EtOAc:hexanes to afford 1-(tert-butyl) 2-methyl 3, 3-difluoropyrrolidine-1, 2-dicarboxylate (1.1 g, 67%) as a pale yellow liquid. 1H-NMR (DMSO-d6, 400 MHz): δ 5.00-4.94 (m, 1H), 3.80-3.71 (m, 1H), 3.70-3.62 (m, 1H), 3.57-3.50 (m, 1H), 3.49-3.40 (m, 1H), 3.34-3.30 (m, 1H) 2.37-2.27 (m, 2H), 1.40 (s, 9H); TLC: 20% EtOAc:hexanes (Rf: 0.2).
Synthesis of tert-butyl 3, 3-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate
To a stirred solution of 1-(tert-butyl) 2-methyl 3, 3-difluoropyrrolidine-1, 2-dicarboxylate (1.1 g, 4.64 mmol) in CH2Cl2 (20 mL) under an argon atmosphere was added trifluoroacetic acid (2.6 g, 23.20 mmol) at 0° C. The reaction mixture was warmed to room temperature and stirred for 12 h. After consumption of starting material (monitored by TLC), the reaction mixture was quenched with a saturated sodium bicarbonate solution (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo to afford tert-butyl 3, 3-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate (730 mg, crude) as a colorless thick oil used in the next step without further purification. TLC: 10% MeOH/CH2Cl2 (Rf: 0.2).
Synthesis of (3, 3-difluoropyrrolidin-2-yl) methanol
To a stirred solution of tert-butyl 3, 3-difluoro-2-(hydroxymethyl) pyrrolidine-1-carboxylate (600 mg, 3.59 mmol) in tert-butanol (8 mL) under an argon atmosphere were added diisopropylethylamine (1.2 mL, 10.77 mmol) and 2, 4-dichloro-5-fluoropyrimidine (639 mg, 4.67 mmol) at room temperature. The reaction mixture was stirred at 120° C. for 16 h. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 25% EtOAc:hexanes to afford (3, 3-difluoropyrrolidin-2-yl) methanol (300 mg, 31%) as an off-white solid. 1H NMR (DMSO-d6, 400 MHz): δ 8.21 (d, 1H), 5.10 (t, 1H), 4.35 (d, 1H), 3.95-3.90 (m, 1H), 3.85-3.71 (m, 2H), 3.69-3.63 (m, 1H), 2.67-2.60 (m, 1H), 2.50-2.43 (m, 1H); LCMS: 267.9 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.97 min. 0.025% Aq TFA+5% ACN: 5% ACN+0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.3).
Synthesis of 2-chloro-7, 7-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine
To a stirred solution of (3, 3-difluoropyrrolidin-2-yl) methanol (450 mg, 1.68 mmol) in acetonitrile (15 mL) under an argon atmosphere was added cesium carbonate (1.36 g, 4.21 mmol) at room temperature. The reaction mixture was stirred at 100° C. for 24 h in a sealed tube. After consumption of starting material (monitored by TLC), the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 20% EtOAc:hexanes to afford 2-chloro-7, 7-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (205 mg, 49%) as an off-white solid. 1H-NMR (CDCl3 500 MHz): δ 7.79 (s, 1H), 4.61 (dd, 1H), 4.09-4.00 (m, 2H), 3.92-3.87 (m, 3H), 3.74-3.70 (m, 1H); LCMS: 247.9 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 2.00 min. 0.025% Aq TFA+5% ACN: 5% ACN+0.025% Aq TFA; 1.2 mL/min); TLC: 30% EtOAc:hexanes (Rf: 0.6).
Example 289
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (55 mg, 0.05 mmol) and Xantphos (100 mg, 0.19 mmol) in 1, 4-dioxane (2.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (250 mg, 0.12 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (248 mg, 0.13 mmol) and cesium carbonate (700 mg, 2.36 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 5% MeOH: CH2Cl2 to afford N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (140 mg, 32%) as an off-white solid. LCMS: 367.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.98 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18 2.1×50 mm, 1.7 μm); RT 1.29 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.2).
Racemic compound of Example 289 separated using a Chiralpak-IA column (250×4.6 mm, 5 μm (15 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 70:30) as mobile phase) to provide the compound of Example 289A (Fraction I (+)) the compound of Example 289B (Fraction II (−)).
Example 289A
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 289A was produced as described in Example 289. Analytical data for Fraction I (+): 1H-NMR (CD3OD, 400 MHz): δ 7.72-7.69 (m, 1H), 7.43 (s, 1H), 7.21 (s, 1H), 7.06-6.99 (m, 2H), 6.75-6.73 (m, 1H), 4.20-4.16 (m, 1H), 3.49-3.39 (m, 2H), 3.37-3.29 (m, 1H), 3.10-3.05 (m, 1H), 1.93 (s, 3H), 1.90-1.80 (m, 2H), 1.79-1.70 (m, 1H), 1.29-1.19 (m, 1H); Mass (ESI): 367 [M+1]; LCMS: 367 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.02 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.30 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.7% RT=13.04 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +34.60 (c=0.25, CH2Cl2).
Example 289B
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 289B was produced as described in Example 289. Analytical data for Fraction II (−): 1H-NMR (CD3OD, 400 MHz): δ 7.72-7.69 (m, 1H), 7.43 (s, 1H), 7.21 (s, 1H), 7.06-6.99 (m, 2H), 6.75-6.73 (m, 1H), 4.20-4.16 (m, 1H), 3.49-3.39 (m, 2H), 3.37-3.29 (m, 1H), 3.10-3.05 (m, 1H), 1.93 (s, 3H), 1.90-1.80 (m, 2H), 1.79-1.70 (m, 1H), 1.29-1.19 (m, 1H); Mass (ESI): 367 [M+1]; LCMS: 367 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.02 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.30 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=15.31 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −33.39 (c=0.25, CH2Cl2).
Example 290
Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (54 mg, 0.05 mmol) and Xantphos (110 mg, 0.19 mmol) in 1, 4-dioxane (2.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (250 mg, 0.12 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (264 mg, 0.13 mmol) and cesium carbonate (530 mg, 1.65 mmol) in 1, 4-dioxane (2.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 36 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude material was purified by column chromatography using 8% MeOH: CH2Cl2 to afford N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (160 mg, 38%) as an off-white solid. LCMS: 379.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.88 min 5 mM Aq NH4OAc: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.28 min. ACN: 0.025% Aq TFA; 0.5 mL/min; TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Racemic Example 290 was purified by (Chiralpak IC (250×4.6 mm, 5 μm (25 mg loading; 0.1% DEA in n-hexane: CH2Cl2 (A:B: 55:45) as mobile phase) to obtain pure Example 290A (Fraction I (−)) and pure Example 290B (Fraction II (+)).
Example 290A
Synthesis of (−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 290A was produced as described in Example 290. Analytical data for Fraction I (−): 1H-NMR (CD3OD, 400 MHz): δ 7.82 (s, 1H), 7.65 (s, 1H), 7.52 (s, 1H), 7.19-7.12 (m, 2H), 6.96 (s, 1H), 4.50-4.48 (m, 1H), 3.87 (s, 3H), 3.79-3.70 (m, 2H), 3.69-3.60 (m, 1H), 3.40-3.35 (m, 1H), 2.25 (s, 3H), 2.23-2.11 (m, 2H), 2.10-2.00 (m, 1H), 1.60-1.50 (m, 1H); Mass (ESI): 471.5 [M+1]; LCMS: 378.9 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.99 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.30 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=15.93 min (chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (90:10) (A:B: 55:45); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −34.28 (c=0.25, CH2Cl2).
Example 290B
Synthesis of (+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 290B was produced as described in Example 290. Analytical data for Fraction II (+): 1H-NMR (CD3OD, 400 MHz): δ 7.82 (s, 1H), 7.65 (s, 1H), 7.52 (s, 1H), 7.19-7.12 (m, 2H), 6.96 (s, 1H), 4.50-4.48 (m, 1H), 3.87 (s, 3H), 3.79-3.70 (m, 2H), 3.69-3.60 (m, 1H), 3.40-3.35 (m, 1H), 2.25 (s, 3H), 2.23-2.11 (m, 2H), 2.10-2.00 (m, 1H), 1.60-1.50 (m, 1H); Mass (ESI): 378.9 [M+1]; LCMS: 379 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.00 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18, 2.1×50 mm, 1.7 μm); RT 1.30 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.4% RT=17.20 min (chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (90:10) (A:B: 55:45); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +46.40 (c=0.25, CH2Cl2).
Example 291
Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.02 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.65 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (130 mg, 0.57 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (233 mg, 1.15 mmol) and cesium carbonate (262 mg, 0.85 mmol) in 1, 4-dioxane (0.65 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporated in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (40 mg, 17%) as an off-white solid. 1H-NMR (DMSO-d6, 500 MHz): δ 9.09 (s, 1H), 7.95 (s, 1H), 7.65 (s, 1H), 7.60 (s, 1H), 7.29 (d, 1H), 7.13 (d, 1H), 7.00 (s, 1H), 4.28 (d, 1H), 3.78 (s, 3H), 3.71-3.66 (m, 1H), 3.60-3.54 (m, 1H), 3.36 (s, 1H), 2.10 (s, 3H), 2.04-1.98 (m, 2H), 1.87-1.80 (m, 1H), 1.69-1.60 (m, 1H), 1.19 (s, 3H); Mass (ESI): 393.4 [M+1]; LCMS: 393.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.11 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity UPLC BEH C-18 2.1×50 mm, 1.7 μm); RT 1.39 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=8.99 min (chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +26.56 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 292
Synthesis of (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (49 mg, 0.08 mmol) in 1, 4-dioxane (0.65 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (130 mg, 0.57 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (219 mg, 1.15 mmol) and cesium carbonate (262 mg, 0.80 mmol) in 1, 4-dioxane (0.65 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were evaporate in vacuo. The residue was diluted with water (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 1% MeOH: CH2Cl2 to afford (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (46 mg, 21%) as a brown solid. 1H-NMR (CD3OD, 400 MHz): δ 8.05-8.00 (m, 1H), 7.75 (s, 1H), 7.59 (s, 1H), 7.39-7.30 (m, 2H), 7.06 (s, 1H), 4.30-4.28 (m, 1H), 3.79-3.72 (m, 1H), 3.70-3.60 (m, 1H), 3.38 (s, 1H), 2.23 (s, 3H), 2.12-2.10 (m, 1H), 2.15-2.10 (m, 1H), 2.00-1.92 (m, 1H), 1.74-1.69 (m, 1H), 1.25 (s, 3H); Mass (ESI): 381.4 [M+1]; LCMS: 381 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.08 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Eclipse XDB C-18 150×4.6 mm, 5.0 μm); RT 10.29 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.2% RT=21.46 min (chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +40.27 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 293
Synthesis of (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (40 mg, 0.06 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (100 mg, 0.44 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (125 mg, 0.66 mmol) and cesium carbonate (200 mg, 0.62 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 130° C. for 12 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to afford (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (32 mg, 20%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.07-8.00 (m, 1H), 7.76 (s, 1H), 7.59 (s, 1H), 7.40-7.28 (m, 2H), 7.06 (s, 1H), 4.30-4.25 (m, 1H), 3.79-3.72 (m, 1H), 3.69-3.61 (m, 1H), 3.37-3.30 (m, 1H), 2.23 (s, 3H), 2.22-2.20 (m, 1H), 2.17-2.10 (m, 1H), 1.99-1.92 (m, 1H), 1.74-1.65 (m, 1H), 1.27 (s, 3H); Mass (ESI): 381.4 [M+1]; LCMS: 381 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.08 min 0.05% Aq TFA: ACN; 0.80 mL/min); HPLC (column; Eclipse XDB C-18, 150×4.6 mm, 5.0μ); RT 10.03 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 98.5% RT=20.61 min (chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 85:15); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −31.47 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.2).
Example 294
Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (38 mg, 0.06 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (100 mg, 0.44 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (134 mg, 0.66 mmol) and cesium carbonate (200 mg, 0.68 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the volatile components were concentrated in vacuo. The crude material was purified by column chromatography using 3% MeOH: CH2Cl2 to afford (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (35 mg, 21%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.82 (s, 1H), 7.65 (s, 1H), 7.57 (s, 1H), 7.19-7.15 (m, 2H), 6.95 (s, 1H), 4.29-4.25 (m, 1H), 3.85 (s, 3H), 3.80-3.72 (m, 1H), 3.70-3.61 (m, 1H), 3.36-3.31 (m, 1H), 2.25-2.22 (m, 1H), 2.21 (s, 3H), 2.13-2.09 (m, 1H), 1.99-1.93 (m, 1H), 1.75-1.68 (m, 1H), 1.25 (s, 3H); Mass (ESI): 393.4 [M+1]; LCMS: 393.1 (M+); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.12 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.43 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.5% RT=13.54 min (chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B: 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −32.12 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Example 295
Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (60 mg, 0.06 mmol) and Xantphos (13 mg, 0.02 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.44 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (178 mg, 0.88 mmol) and cesium carbonate (200 mg, 0.61 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude was purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/85, 15/70, 25/20, 30/10, 35/10) as mobile phase) to afford (S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine (25 mg, 14%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.67 (s, 1H), 7.66 (s, 1H), 7.59 (s, 1H), 7.20-7.16 (m, 2H), 6.97 (s, 1H), 4.47-4.40 (m, 1H), 4.27-4.21 (m, 1H), 4.04-4.00 (m, 1H), 3.97-3.90 (m, 1H), 3.84 (s, 3H), 3.83-3.80 (m, 2H), 3.70-3.60 (m, 1H), 3.32-3.30 (m, 1H), 3.11-3.03 (m, 1H), 2.12 (s, 3H); Mass (ESI): 395.1 [M+1]; LCMS: 395.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.86 min 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH-C-18 50×2.1 mm, 1.7 μm); RT 1.29 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.6% RT=21.29 min (Chiralpak-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2 (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +9.66 (c=0.25, CH2Cl2); TLC: 10% MeOH/CH2Cl2 (Rf: 0.3).
Example 296
Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (60 mg, 0.06 mmol) and Xantphos (13 mg, 0.02 mmol) in 1, 4-dioxane (0.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.44 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (178 mg, 0.88 mmol) and cesium carbonate (200 mg, 0.61 mmol) in 1, 4-dioxane (0.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The crude was purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (50 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/85, 15/70, 25/20, 30/10, 35/10) as mobile phase) to afford (R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (23 mg, 13%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.67 (s, 1H), 7.66 (s, 1H), 7.58 (s, 1H), 7.20-7.13 (m, 2H), 6.98 (s, 1H), 4.45-4.40 (m, 1H), 4.25-4.20 (m, 1H), 4.01-3.99 (m, 1H), 3.91-3.89 (m, 1H), 3.83 (s, 3H), 3.82-3.80 (m, 2H), 3.69-3.60 (m, 1H), 3.30-3.28 (m, 1H), 3.10-3.01 (m, 1H), 2.20 (s, 3H); Mass (ESI): 395.1 [M+1]; LCMS: 395.2 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 1.89 min 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH-C-18 50×2.1 mm, 1.7 μm); RT 1.26 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.0% RT=28.44 min (Chiralpak-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 80:20); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: −7.45 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.1).
Example 297
Synthesis of (S)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (S)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (46 mg, 0.05 mmol) and Xantphos (88 mg, 0.15 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (250 mg, 1.01 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (411 mg, 2.02 mmol) and cesium carbonate (460 mg, 1.41 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with a saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH: CH2Cl2 to obtain 100 mg of compound which was further purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (70 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/85, 15/70, 25/25, 30/10, 35/10) as mobile phase) to afford (S)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (60 mg, 14%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.71-7.70 (m, 1H), 7.66-7.65 (m, 1H), 7.63 (s, 1H), 7.24-7.19 (m, 2H), 6.96 (s, 1H), 4.52 (dd, 1H), 4.23-4.14 (m, 2H), 3.98-3.80 (m, 1H), 3.86 (s, 3H), 3.58 (t, 1H), 2.67-2.56 (m, 1H), 2.34-2.27 (m, 1H), 2.23 (s, 3H); Mass (ESI): 415.4 [M+1]; LCMS: 415.1 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.04 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.41 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=9.25 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: +16.60 (c=0.25, CH2Cl2). TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 298
Synthesis of (S)-8, 8-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (S)-8, 8-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (46 mg, 0.05 mmol) and Xantphos (88 mg, 0.15 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (250 mg, 1.01 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (413 mg, 2.02 mmol) and cesium carbonate (461 mg, 1.41 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with a saturated sodium carbonate solution (20 mL) and extracted with EtOAc (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 8% MeOH: CH2Cl2 to afford (S)-8, 8-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (100 mg, 23%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 8.25 (s, 2H), 8.12 (s, 1H), 7.67 (s, 1H), 7.40 (s, 1H), 4.52-4.50 (m, 1H), 4.20-4.10 (m, 2H), 3.98 (s, 3H), 3.97-3.90 (m, 1H), 3.59 (t, 1H), 2.68-2.56 (m, 1H), 2.30-2.25 (m, 1H), 2.22 (s, 3H); Mass (ESI): 416.3 [M+1]; LCMS: 416 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.41 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.41 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 100% RT=10.74 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DFA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +5.29 (c=0.25, CH2Cl2); TLC: 10% MeOH/CH2Cl2 (Rf: 0.4).
Example 299
Synthesis of (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (38 mg, 0.06 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (S)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.44 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (173 mg, 0.88 mmol) and cesium carbonate (200 mg, 0.61 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2×50 mL). The combined organic extracts were washed with brine (20 mL), dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (50 mg loading; CH3CN: 5 mM NH4OAc (0.1/80, 2/80, 10/50, 25/20, 30/10, 35/10) as mobile phase) to afford (S)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine (24 mg, 21%) as a white solid. 1H NMR (CD3OD, 400 MHz): δ 7.90 (d, 1H), 7.76 (s, 1H), 7.61 (s, 1H), 7.40-7.30 (m, 2H), 7.07 (s, 1H), 4.40 (dd, 1H), 4.25 (dd, 1H), 4.04 (dd, 1H), 3.94 (dd, 1H), 3.86-3.81 (m, 1H), 3.71-3.58 (m, 2H), 3.26 (s, 1H), 3.14-3.03 (m, 1H), 2.25 (s, 3H): Mass (ESI): 383.4 [M+1]; LCMS: 383.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.23 min 5 mM NH4OAc in water: ACN; 0.8 mL/min); UPLC (column; Eclipse XDBC-18 150×4.6 mm, 5.0 μm); RT 9.15 min. ACN: 5 mM Aq NH4OAc; 0.5 mL/min; Chiral HPLC: 98.7% RT=10.32 min (Chiralpak-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +5.82 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.1).
Example 300
Synthesis of (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine




Synthesis of (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (38 mg, 0.06 mmol) in 1, 4-dioxane (0.25 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazine (100 mg, 0.44 mmol), 3-fluoro-4-(4-methyl-1H-imidazol-1-yl) aniline (173 mg, 0.88 mmol) and cesium carbonate (200 mg, 0.61 mmol) in 1, 4-dioxane (0.25 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered, the filtrate was concentrated in vacuo. The crude material was purified by preparative HPLC (Chiralpak IC (250×4.6 mm: 5 μm; (35 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50); (A:B: 70:30) as mobile phas30e) to afford (R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 9, 10-tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine (35 mg, 21%) as a white solid. 1H NMR (CD3OD, 400 MHz): δ 7.88 (d, 1H), 7.76 (s, 1H), 7.60 (s, 1H), 7.40-7.33 (m, 2H), 7.07 (s, 1H), 4.41 (dd, 1H), 4.24 (dd, 1H), 4.04 (dd, 1H), 3.93 (dd, 1H), 3.84-3.82 (m, 1H), 3.70-3.60 (m, 2H), 3.28 (s, 1H), 3.14-3.02 (m, 1H), 2.26 (s, 3H): Mass (ESI): 383.4 [M+1]; LCMS: 383.4 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 3.22 min 5 mM Aq NH4OAc: ACN; 0.8 mL/min); HPLC (column; Eclipse XDB-C-18 150×4.6 mm, 5.0 μm); RT 9.15 min. ACN: 5 mM Aq NH4OAc; 1.0 mL/min; Chiral HPLC: 99.0% RT=14.32 min (Chiralpak-IA (250×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −4.28 (c=0.25, CH2Cl2); TLC: 5% MeOH/CH2Cl2 (Rf: 0.1).
Example 301
Synthesis of N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




Synthesis of 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one
To a dry vial was added a suspension of Pd2(dba)3 (26 mg, 0.03 mmol) and Xantphos (50 mg, 0.08 mmol) in 1, 4-dioxane (0.75 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one (130 mg, 0.57 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (116 mg, 0.57 mmol) and cesium carbonate (262 mg, 0.80 mmol) in 1, 4-dioxane (0.75 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 5 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was filtered and the filtrate was concentrated in vacuo. The residue was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (55 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/80, 15/70, 25/20, 30/10, 35/10) to afford 2-((3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one (30 mg, 11%) as an off-white solid. LCMS: 393 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.24 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 301 was separated using a Chiralpak-IC column (250×20 mm, 5 μm (10 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 70:30) as mobile phase) to provide the compound of Example 301A (Fraction I (+)) the compound of Example 301B (Fraction II (−)).
Example 301A
Synthesis of (+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




The compound of Example 301A was produced as described in Example 301. Analytical data for product Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.11 (s, 1H), 7.98 (s, 1H), 7.69 (s, 1H), 7.20-7.18 (m, 2H), 6.97 (s, 1H), 4.55-4.51 (m, 1H), 4.22-4.19 (m, 1H), 3.91 (s, 3H), 3.78 (t, 1H), 2.75-2.70 (m, 1H), 2.52-2.49 (m, 1H), 2.40-2.30 (m, 1H), 2.22 (s, 3H), 1.83-1.78 (m, 1H); Mass (ESI): 393.4 [M+1]; LCMS: 392.9 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.24 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.54 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.1% RT=15.09 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.02: +63.66 (c=0.25, CH2Cl2).
Example 301B
Synthesis of (−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine




The compound of Example 301B was produced as described in Example 301. Analytical data for product Fraction II (−): 1H NMR (CD3OD, 400 MHz): δ 8.11 (s, 1H), 7.98 (s, 1H), 7.69 (s, 1H), 7.20-7.18 (m, 2H), 6.97 (s, 1H), 4.55-4.51 (m, 1H), 4.22-4.19 (m, 1H), 3.91 (s, 3H), 3.78 (t, 1H), 2.75-2.70 (m, 1H), 2.52-2.49 (m, 1H), 2.40-2.30 (m, 1H), 2.22 (s, 3H), 1.83-1.78 (m, 1H); Mass (ESI): 393.4 [M+1]; LCMS: 393 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.24 min. 0.05% Aq TFA: ACN; 0.8 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.54 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.5% RT=18.96 min (Chiralpak-IA (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (80:20) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −61.98 (c=0.25, CH2Cl2).
Example 302
Synthesis of 2-((5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one




Synthesis of 2-((5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one
To a dry vial was added a suspension of Pd2(dba)3 (20 mg, 0.02 mmol) and Xantphos (38 mg, 0.06 mmol) in 1, 4-dioxane (1 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one (100 mg, 0.44 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (91 mg, 0.44 mmol) and cesium carbonate (202 mg, 0.62 mmol) in 1, 4-dioxane (1 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 4 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Column X-select CSH C18 column (250×19 mm, 5 μm (75 mg loading; CH3CN: 005% TFA (0.01/95, 15/70, 25/50, 35/10 to afford 2-((5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one (65 mg, 37%) as an off-white solid. LCMS: 394 (M+1); (column; X-select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.20 min. 0.05% Aq TFA: ACN; 0.8 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 302 was separated using a Chiralpak-IA column (250×20 mm, 5 μm (20 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 70:30) as mobile phase) to provide the compound of Example 302A (Fraction I (+)) the compound of Example 302B (Fraction II (−)).
Example 302A
Synthesis of (+)-2-((5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one




The compound of Example 302A was produced as described in Example 302. Analytical data for product Fraction I (+): 1H NMR (CD3OD, 400 MHz): δ 8.81-8.77 (m, 1H), 8.14 (s, 2H), 8.08-8.06 (m, 1H), 7.40 (s, 1H), 4.55 (dd, 1H), 4.28-4.18 (m, 1H), 4.08 (s, 3H), 3.75 (t, 1H), 2.78-2.73 (m, 1H), 2.56-2.50 (m, 1H), 2.40-2.31 (m, 1H), 2.26 (s, 3H), 1.88-1.80 (m, 1H); Mass (ESI): 394.4 [M+1]; LCMS: 394.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.87 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.51 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 99.3% RT=13.44 min (Chiralpak-IA (150×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D19.98: +61.92 (c=0.25, CH2Cl2).
Example 302B
Synthesis of (−)-2-((5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl) amino)-6, 6a, 7, 8-tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one




The compound of Example 302B was produced as described in Example 302. Analytical data for product Fraction II (−): 1H NMR (CD3OD, 400 MHz): δ 8.81-8.77 (m, 1H), 8.14 (s, 2H), 8.08-8.06 (m, 1H), 7.40 (s, 1H), 4.55 (dd, 1H), 4.28-4.18 (m, 1H), 4.08 (s, 3H), 3.75 (t, 1H), 2.78-2.73 (m, 1H), 2.56-2.50 (m, 1H), 2.40-2.31 (m, 1H), 2.26 (s, 3H), 1.88-1.80 (m, 1H); Mass (ESI): 394.4 [M+1]; LCMS: 394.3 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.86 min 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.50 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.0% RT=15.98 min (Chiralpak-IA (150×4.6 mm, 5μ; mobile phase (A) 0.1% DEA in n-hexane (B) CH2Cl2:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.01: −58.51 (c=0.25, CH2Cl2).
Example 303
Synthesis of (R)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of (R)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (46 mg, 0.05 mmol) and Xantphos (88 mg, 0.15 mmol) in 1, 4-dioxane (1.5 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of (R)-2-chloro-8, 8-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (250 mg, 1.01 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (411 mg, 2.02 mmol) and cesium carbonate (460 mg, 1.41 mmol) in 1, 4-dioxane (1.5 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (20 mL) and extracted with CH2Cl2 (2×20 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by preparative HPLC (Ascentis C18 (250×21.2 mm: 5μ; (70 mg loading; CH3CN: 0.05% TFA (0.1/90, 2/85, 15/70, 25/25, 30/10, 35/10) as mobile phase) to afford (R)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (140 mg, 33%) as an off-white solid. 1H-NMR (CD3OD, 400 MHz): δ 7.71-7.70 (m, 1H), 7.66-7.65 (m, 1H), 7.63 (s, 1H), 7.24-7.19 (m, 2H), 6.96 (s, 1H), 4.52 (dd, 1H), 4.23-4.14 (m, 2H), 3.98-3.80 (m, 1H), 3.86 (s, 3H), 3.58 (t, 1H), 2.67-2.56 (m, 1H), 2.34-2.27 (m, 1H), 2.23 (s, 3H); Mass (ESI): 415.5 [M+1]; LCMS: 415.5 (M+1); (column; X-Select CSH C-18 (50×3.0 mm, 3.5 μm); RT 2.03 min. 0.05% Aq TFA: ACN; 0.80 mL/min); UPLC (column; Acquity BEH C-18, 50×2.1 mm, 1.7 μm); RT 1.40 min. ACN: 0.025% Aq TFA; 0.5 mL/min; Chiral HPLC: 98.1% RT=22.40 min (Chiralpak-ADH (250×4.6 mm, 5 μm; mobile phase (A) n-hexane (B) EtOH (70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D21.00: −14 4 (c=0.25, CH2Cl2). TLC: 5% MeOH/CH2Cl2 (Rf: 0.4).
Example 304
Synthesis of 7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of 7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (70 mg, 0.12 mmol) in 1, 4-dioxane (2 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 7-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (200 mg, 0.80 mmol), 3-methoxy-4-(4-methyl-1H-imidazol-1-yl) aniline (328 mg, 1.61 mmol) and cesium carbonate (368 mg, 1.13 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH/CH2Cl2 to afford 7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (120 mg, 36%) as an off-white solid. LCMS: 415 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.54 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.5).
Racemic compound of Example 304 was separated using a Chiralpak-IC column (250×20 mm, 5 μm (50 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 70:30) as mobile phase) to provide the compound of Example 304A (Fraction I (−)) the compound of Example 304B (Fraction II (+)).
Example 304A
Synthesis of (−)-7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 304A was produced as described in Example 304. Analytical data for product Fraction I (−): 1H NMR (CD3OD, 400 MHz): δ 7.79 (s, 1H), 7.67 (s, 1H), 7.66 (s, 1H), 7.24-7.16 (m, 2H), 6.97 (s, 1H), 4.59 (dd, 1H), 4.20-4.11 (m, 1H), 3.95-3.90 (m, 2H), 3.86 (s, 3H), 3.78-3.70 (m, 1H), 2.70-2.51 (m, 2H), 2.24 (s, 3H); Mass (ESI): 415.4 [M+1]; LCMS: 415 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.53 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.31 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 99.6% RT=12.58 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.03: −30.80 (c=0.25, CH2Cl2).
Example 304B
Synthesis of (+)-7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 304B was produced as described in Example 304. Analytical data for product Fraction II (+): 1H NMR (CD3OD, 400 MHz): δ 7.79 (s, 1H), 7.67 (s, 1H), 7.66 (s, 1H), 7.24-7.16 (m, 2H), 6.97 (s, 1H), 4.59 (dd, 1H), 4.20-4.11 (m, 1H), 3.95-3.90 (m, 2H), 3.86 (s, 3H), 3.78-3.70 (m, 1H), 2.70-2.51 (m, 2H), 2.24 (s, 3H); Mass (ESI): 415.4 [M+1]; LCMS: 415 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.53 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.31 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 96.8% RT=13.81 min (Chiralpak-IC (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA in n-hexane (B) EtOH:MeOH (50:50) (A:B; 70:30); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +38.27 (c=0.25, CH2Cl2).
Example 305
Synthesis of 7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




Synthesis of 7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
To a dry vial was added a suspension of Pd2(dba)3 (37 mg, 0.04 mmol) and Xantphos (70 mg, 0.12 mmol) in 1, 4-dioxane (2 mL) at room temperature. The suspension was degassed with argon, heated to 120° C., and stirred for 3 min. A mixture of 2-chloro-7, 7-difluoro-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazine (200 mg, 0.80 mmol), 5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-amine (330 mg, 1.61 mmol) and cesium carbonate (368 mg, 1.13 mmol) in 1, 4-dioxane (2 mL) was degassed and the catalyst premixture was added. The resultant mixture was stirred at 120° C. for 16 h in a sealed tube. After consumption of the starting material (monitored by TLC and LCMS), the reaction mixture was diluted with water (50 mL) and extracted with CH2Cl2 (2×50 mL). The combined organic extracts were dried over sodium sulfate, filtered and concentrated in vacuo. The crude material was purified by column chromatography using 4% MeOH/CH2Cl2 to afford 7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine (110 mg, 33%) as an off-white solid. LCMS: 416.1 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.55 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); TLC: 5% MeOH/CH2Cl2 (Rf: 0.3).
Racemic compound of Example 305 was separated using a Chiralpak-IC column (250×20 mm, 5 μm (50 mg loading; 0.1% DEA in n-hexane: CH2Cl2:MeOH (50:50) (A:B: 70:30) as mobile phase) to provide the compound of Example 305A (Fraction I (+)) the compound of Example 305B (Fraction II (−)).
Example 305A
Synthesis of (+)-7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 305A was produced as described in Example 305. Analytical data for product Fraction I (+): 1H NMR (DMSO-d6, 400 MHz): δ 9.46 (s, 1H), 8.36-8.34 (m, 1H), 8.33-8.31 (m, 1H), 8.05 (s, 1H), 7.77 (s, 1H), 7.37 (s, 1H), 4.65 (dd, 1H), 4.29-4.16 (m, 1H), 3.92 (s, 3H), 3.88-3.83 (m, 2H), 3.67 (t, 1H), 2.70-2.50 (m, 2H), 2.15 (s, 3H); Mass (ESI): 416.4 [M+1]; LCMS: 416 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.55 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.29 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 100% RT=9.66 min (Chiralpak-AD-H (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA+MeOH (B) IPA (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D20.00: +36.28 (c=0.25, CH2Cl2).
Example 305B
Synthesis of (−)-7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine




The compound of Example 305B was produced as described in Example 305. Analytical data for product Fraction II (−): 1H NMR (DMSO-d6, 400 MHz): δ 9.46 (s, 1H), 8.36-8.34 (m, 1H), 8.33-8.31 (m, 1H), 8.05 (s, 1H), 7.77 (s, 1H), 7.37 (s, 1H), 4.65 (dd, 1H), 4.29-4.16 (m, 1H), 3.92 (s, 3H), 3.88-3.83 (m, 2H), 3.67 (t, 1H), 2.70-2.50 (m, 2H), 2.15 (s, 3H); Mass (ESI): 416.4 [M+1]; LCMS: 416 (M+1); (column; Ascentis Express C-18 (50×3.0 mm, 2.7 μm); RT 1.55 min. 0.025% Aq TFA+5% ACN: ACN+5% 0.025% Aq TFA; 1.2 mL/min); HPLC (column; Eclipse XDB-C-18, 150×4.6 mm, 5.0 μm); RT 6.29 min. ACN: 0.05% Aq TFA; 1.0 mL/min; Chiral HPLC: 97.8% RT=13.24 min (Chiralpak-ADH (250×4.6 mm, 5 μm; mobile phase (A) 0.1% DEA+MeOH (B) IPA (A:B; 75:25); flow Rate: 1.0 mL/min); Optical rotation [α]D19.99: −38.15 (c=0.25, CH2Cl2).
Example 306
In Vitro Cell Screening Assay and Quantification of Aβ(1-x) and Aβ(1-42) Peptides
Human neuroglioma H4 cells were transfected with a pcDNA3.1 plasmid expressing human wild type APP751 cDNA and a stable cell line was generated using G418 selection. Cells are plated at 15,000 cells/well in Costar 96-well plates and placed at 37° C. and 5% CO2. Six hours after plating, cells are washed three times with Pro293TM chemically defined medium, followed by addition of compounds (0.003-10 μM, final DMSO concentration of 0.33%). Plates were incubated overnight (16-18 h) and supernatant was removed for quantification of AP peptides by sandwich ELISA. Cytotoxicity was evaluated using Cell-Titer 96W AQueous One Solution Cell Proliferation Assay according to the manufacturer's protocol.
ELISA Measurements of Aβ Peptides
Aβ peptide levels were quantified by sandwich ELISA. 96-well plates are coated with C-terminal specific Aβ antibodies recognizing either Aβ37, Aβ38, Aβ40, Aβ42, Aβ43 or a N-terminal specific Aβ antibody to detect Aβ 1-x. Plates are then blocked overnight at 4° C. with 1% bovine serum albumin (BSA) in PBS-T. Plates are washed and 100 μl of cultured cell supernatant or synthetic Aβ peptide standards and a detection antibody (4G8-HRP) are applied to the blocked plate and incubated overnight at 4° C. The next day, wells are washed before the addition the addition of detection substrate (TMB peroxidase). Plates are then read for absorbance at 450 nm on a Molecular Devices SpectraMax M5e Microplate Reader.
Compound-treated samples were normalized to samples treated with DMSO alone (no inhibition) and to samples treated with DAPT. IC50 values were calculated from values reported as percent of DMSO controls using nonlinear regression, based on a sigmoidal dose-response (variable slope) model. GraphPAD software from Prism used for calculation.







TABLE III







Biological Assay













Aβ42





H4





Prot





Fre


Compound


IC50


of Example
Structure
Name
(μM)













21A




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.022


 


21B




(S)-N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.040


 


22A




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.087


 


22B




(R)-N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.168


 


23




7-(3,5-difluorophenyl)-8- methyl-N-(4-(4-methyl- 1H-imidazol-1- yl)phenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.0379


 


23A




(−)-7-(3,5- difluorophenyl)-8-methyl- N-(4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
2.035


 


23B




(+)-7-(3, 5- difluorophenyl)-8-methyl- N-(4-(4-methyl-1H- imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.032


 


24




8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-phenyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.155


 


24A




(+)-8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-phenyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine
0.068


 


24B




(−)-8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-phenyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine
1.019


 


25




N-(3-fluoro-4-(4-methyl- 1H-imidazol-1- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1 ,4]oxazin-2-amine (racemic)
0.101


 


25A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b] [1,4] oxazin-2-amine
0.014


 


25B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.334


 


26




8-methyl-N-(4-(4-methyl- 1H-imidazol-1- yl)phenyl)-7-phenyl-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine (racemic)
0.121


 


26A




(+)-8-methyl-N-(4-(4- methyl-1H-imidazol-1- yl)phenyl)-7-phenyl-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine
0.055


 


26B




(−)-8-methyl-N-(4-(4- methyl-1H-imidazol-1- yl)phenyl)-7-phenyl-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine
3.140


 


27




N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine (racemic)
0.374


 


27A




(+)-N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.306


 


27B




(−)-N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
2.102


 


28




7-(3,5-difluorophenyl)-8- methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.090


 


28A




(−)-7-(3,5- difluorophenyl)-8-methyl- N-(4-(2-methylpyridin-4- yl)phenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine
1.957


 


28B




(+)-7-(3,5- difluorophenyl)-8-methyl- N-(4-(2-methylpyridin-4- yl)phenyl)-7,8-dihydro- 6H-pyrimido[5,4- b][1,4]oxazin-2-amine
0.060


 


29




8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-(o-tolyl)-7,8- dihydro-6H-pyrimido[5,4- b] [1,4]oxazin-2-amine (racemic)
0.297


 


29A




(−)-8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-(o-tolyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine
1.096


 


29B




(+)-8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-(o-tolyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine
0.068


 


30




7-(3,5-difluorophenyl)-N- (3-methoxy-4-(4-methyl- 1H-imidazol-1 - yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.018


 


30A




(−)-7-(3,5- difluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.177


 


30B




(+)-7-(3,5- difluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.023


 


31




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine (racemic)
0.025


 


31A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.1382


 


31B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.0296


 


32




N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine (racemic)
0.168


 


32A




(−)-N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.888


 


32B




(+)-N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.131


 


33




7-(3,5-difluorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.038


 


33A




(+)-7-(3,5- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.014


 


33B




(−)-7-(3,5- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl)phenyl)-8- methyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.389


 


34




N-(3-fluoro-4-(4-methyl- 1H-imidazol-1- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.044


 


34A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.020


 


34B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.460


 


35




N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.087


 


35A




(−)-N-(3-methoxy-4-(2- methylpyridin-4- yl)henyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.355


 


35B




(+)-N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7-(o- tolyl)-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.035


 


36




N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.162


 


36A




(+)-N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine
0.107


 


36B




(−)-N-(3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido[5,4- b][1,4]xazin-2-amine
1.250


 


37




8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-(3,4,5- trifluorophenyl)-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.103


 


37A




(+)-8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-(3,4,5- trifluorophenyl)-7,8- dihydro-6H-pyrimido [5,4- b][1,4]oxazin-2-amine
0.059


 


37B




(−)-8-methyl-N-(4-(2- methylpyridin-4- yl)phenyl)-7-(3,4,5- trifluorophenyl)-7,8- dihydro-6H-pyrimido [5,4- b][1,4]oxazin-2-amine
1.539


 


38




N-(3-fluoro-4-(4-methyl- 1H-imidazol-1- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b][1,4]oxazin-2-amine (racemic)
0.032


 


39




N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b][1,4]oxazin-2-amine (racemic)
0.035


 


39A




(+)-N-(3-methoxy-4-(2- (methylpyridin-4- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.041


 


39B




(−)-N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.984


 


40




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine (racemic)
0.020


 


40A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.279


 


40B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- (3,4,5-trifluorophenyl)- 7,8-dihydro-6H- pyrimido [5,4- b] [1,4] oxazin-2-amine
0.011


 


41




7-(3,5-difluorophenyl)-N- (3-fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine (racemic)
0.063 


 


41A




(+)-7-(3,5- difluorophenyl)-N-(3- fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine
0.077


 


41B




(−)-7-(3,5- difluorophenyl)-N-(3- fluoro-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine
1.264


 


42




7-(3,5-difluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.047


 


42A




(+)-7-(3,5- difluorophenyl)-N-(3- methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido[5,4- b][1,41oxazin-2-amine
0.036


 


42B




(−)-7-(3,5- difluorophenyl)-N-(3- methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine
0.801


 


43




8-methyl-N-(4-(4-methyl- 1H-imidazol-1- yl)phenyl)-7-(o-tolyl)-7,8- dihydro-6H-pyrimido[5,4- b] [1,4]oxazin-2-amine (racemic)
0.216


 


43A




(+)-8-methyl-N-(4-(4- methyl-1H-imidazol-1- yl)phenyl)-7-(o-tolyl)-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine
0.031


 


43B




(−)-8-methyl-N-(4-(4- methyl-1H-imidazol-1- yl)phenyl)-7-(o-tolyl)-7,8- dihydro-6H-pyrimido [5,4- b] [1,4] oxazin-2-amine
>0.300


 


44




8-methyl-N-(4-(4-methyl- 1H-imidazol-1- yl)phenyl)-7-(3,4,5- trifluorophenyl)-7,8- dihydro-6H-pyrimido[5,4- b] [1,4]oxazin-2-amine (racemic)
0.075


 


45




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido [5,4- b][1,4]oxazin-2-amine (racemic)
0.058


 


46




N-(3-methoxy-4-(2- methylpyridin-4- yl)phenyl)-8-methyl-7- phenyl-7,8-dihydro-6H- pyrimido[5,4- b][1,4]oxazin-2-amine (racemic)
0.048


 


47




7-benzyl-N-(3-methoxy- 4-(4-methyl-1H-imidazol- 1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine (racemic)
0.041


 


47A




(+)-7-benzyl-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.023


 


47B




(−)-7-benzyl-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.065


 


48




7-(2, 4-difluorophenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.036


 


48A




(−)-7-(2, 4- difluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.328


 


48B




(+)-7-(2, 4- difluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.020


 


49




7-(4-fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.036


 


49A




(−)-7-(4-fluorophenyl)-N- (3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.191


 


49B




(+)-7-(4-fluorophenyl)-N- (3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.009


 


50




N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (tetrahydro-2H-pyran-4- yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.173


 


51




7-(2-chlorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.032


 


51A




(−)-7-(2-chlorophenyl)-N- (3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 41 oxazin-2-amine
0.028


 


51B




(+)-7-(2-chlorophenyl)-N- (3-methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.058


 


52




N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine (racemic)
0.205


 


53




7-(2-chloro-4- fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7,8-dihydro-6H- pyrimido [5, 4-b] [1,4] oxazin-2-amine (racemic)
0.037


 


54




7-(4-fluoro-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.075


 


55




N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine (racemic)
0.037


 


55A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.102


 


55B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.066


 


56A




(+)-N-(3-fluoro-4-(2- methylpyridin-4-yl) phenyl)-7-(4- fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine 
0.071


 


56B




(−)-N-(3-fluoro-4-(2- methylpyridin-4-yl) phenyl)-7-(4- fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
3.464


 


57A




(+)-7-benzyl-N-(3-fluoro- 4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.118


 


57B




(−)-7-benzyl-N-(3-fluoro- 4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.880


 


58A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(4- fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.028


 


58B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(4- fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine 
1.951


 


59A




(+)-7-benzyl-N-(3-fluoro- 4-(4-methyl-1H-imidazol- 1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.081


 


59B




(−)-7-benzyl-N-(3-fluoro- 4-(4-methyl-1H-imidazol- 1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.452


 


60A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.092


 


60B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.078


 


61A




(−)-7-(4-fluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 41 oxazin-2-amine
1.007


 


61B




(+)-7-(4-fluorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.058


 


62A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7-(2- (trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.339


 


62B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7-(2- (trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.165


 


63A




(−)-7-(2, 4- difluorophenyl)-N-(3- methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.543


 


63B




(+)-7-(2, 4- difluorophenyl)-N-(3- methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.064


 


64A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.402


 


64B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethoxy) phenyl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.741


 


65




N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3- dihydro-1H-pyrido [3, 4- b] [1, 4] oxazin-7-amine (racemic)
0.092


 


66A




(+)-7-(2, 4- difluorophenyl)-N-(3- fluoro-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.488


 


66B




(−)-7-(2, 4- difluorophenyl)-N-(3- fluoro-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
1.100


 


67A




(+)-7-(2-chlorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.124


 


67B




(−)-7-(2-chlorophenyl)-N- (3-fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.643


 


68A




(+)-7-benzyl-N-(3- methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine  
0.050


 


68B




(−)-7-benzyl-N-(3- methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine 
0.229


 


69A




(+)-7-(2, 4- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.069


 


69B




(−)-7-(2, 4- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


70A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.339


 


70B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.151


 


84A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1 -yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.203


 


84B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2- (trifluoromethyl) phenyl)- 7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 41 oxazin-2- amine
0.421


 


85A




(−)-2-(2-chlorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-1-methyl-2, 3- dihydro-1H-pyrido [3, 4- b] [1, 4] oxazin-7-amine
0.292


 


85B




(+)-2-(2-chlorophenyl)-N- (3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-1-methyl-2, 3- dihydro-1H-pyrido [3, 4- b] [1, 4] oxazin-7-amine
0.130


 


86




7-(2-chloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.038


 


87




7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.042


 


88




7-(2-chloro-5- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.039


 


88A




(+)-7-(2-chloro-5- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.037


 


88B




(−)-7-(2-chloro-5- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.286


 


89




7-(2, 5-dichloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.023


 


90




7-(5-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
0.027


 


91




7-(2, 4-bis (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido 4-b] [1, 4] oxazin-2-amine (racemic)
0.110


 


92




7-(4-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic) 
0.027


 


93A




(−)-7-(2-chloro-4- fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7,8-dihydro-6H- pyrimido [5, 4-b] [1,4] oxazin-2-amine
0.189


 


93B




(+)-7-(2-chloro-4- fluorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7,8-dihydro-6H- pyrimido [5, 4-b] [1,4] oxazin-2-amine
0.032


 


94A




(−)-7-(4-fluoro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.078


 


94B




(+)-7-(4-fluoro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.029


 


95A




(−)-7-(2, 4- dichlorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.116


 


95B




(+)-7-(2, 4- dichlorophenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.015


 


96A




(+)-7-(2, 4- dichlorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.076


 


96B




(−)-7-(2, 4- dichlorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.879


 


97A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.244


 


97B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.013


 


98A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.020


 


98B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
2.103


 


99A




(+)-7-(4-fluoro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.206


 


99B




(−)-7-(4-fluoro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
1.039


 


100A




(+)-7-(5-chloro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.101


 


100B




(−)-7-(5-chloro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.588


 


101A




(+)-7-(2-chloro-4- fluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.075


 


101B




(−)-7-(2-chloro-4- fluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.685


 


102A




(+)-7-(2-chloro-4- fluorophenyl)-N-(3- fluoro-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5 4-b] [1, 4] oxazin-2-amine
0.415


 


102B




(−)-7-(2-chloro-4- fluorophenyl)-N-(3- fluoro-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
1.353


 


103A




(+)-7-(2-chloro-4, 5- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.019


 


103B




(−)-7-(2-chloro-4, 5- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.219


 


104A




(−)-7-(5-fluoro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.526


 


104B




(+)-7-(5-fluoro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.077


 


105A




(−)-7-(5-fluoro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.088


 


105B




(+)-7-(5-fluoro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.051 


 


106A




(+)-7-(4-chloro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.154


 


106B




(−)-7-(4-chloro-2- (trifluoromethyl) phenyl)- N-(3-fluoro-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
1.023


 


107A




(−)-7-(4-chloro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.422


 


107B




(+)-7-(4-chloro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.174


 


108A




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.567


 


108B




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.108


 


109A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (tetrahydro-2H-pyran-4- yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.212


 


109B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (tetrahydro-2H-pyran-4- yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


110A




(−)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 41 oxazin-2- amine
0.199


 


110B




(+)-N-(3-methoxy-4-(2- methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.091


 


111




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7- (methoxymethyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.120


 


112A




(−)-7-(4-chloro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.231


 


112B




(+)-7-(4-chloro-2- (trifluoromethyl) phenyl)- N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.064


 


113




(S)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7- (methoxymethyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.331


 


114A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (tetrahydro-2H-pyran-4- yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.494


 


114B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7- (tetrahydro-2H-pyran-4- yl)-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.077


 


115A




(−)-8-methyl-N-(4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
2.858


 


115B




(+)-8-methyl-N-(4-(4- methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.022


 


116A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.148


 


116B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.063


 


117A




(−)-7-(4-fluoro-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.140


 


117B




(+)-7-(4-fluoro-2- methylphenyl)-N-(3- methoxy-4-(4-methyl-1H- imidazol-1-yl) phenyl)-8- methyl-7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.022


 


118A




(+)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.029


 


118B




(−)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
1.341


 


164




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7- (methoxymethyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.411


 


165A




(+)-7-(5-chloro-2- (trifluoromethyl) phenyl)-N-(3-methoxy- 4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.089


 


165B




(−)-7-(5-chloro-2- (trifluoromethyl) phenyl)-N-(3-methoxy- 4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine 
0.079


 


166A




(+)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.031


 


166B




(−)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.090


 


167A




(+)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.022


 


167B




(−)-7-(2-chloro-5- methoxyphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.075


 


168A




(−)-7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy- 4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.566


 


168B




(+)-7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy- 4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine 
0.076


 


169A




(+)-7-(2-chloro-4, 5- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.045


 


169B




(−)-7-(2-chloro-4, 5- difluorophenyl)-N-(3- fluoro-4-(4-methyl-1H- imidazol-1-yl) phenyl)- 8-methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
2.264


 


170




(S)-(2-((3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl) amino)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
1.243


 


171A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(o-tolyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.011


 


171B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(o-tolyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.067


 


172A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-1-methyl-2- (2, 2, 2-trifluoroethyl)- 2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7- amine
0.207


 


172B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-1-methyl-2- (2, 2, 2-trifluoroethyl)- 2, 3-dihydro-1H-pyrido [3, 4-b] [1, 41 oxazin-7- amine
0.054


 


173A




(+)-7-(2-chloro-5- (trifluoromethyl) phenyl)-N-(3-fluoro-4- (4-methyl-1H-imidazol- 1-yl) phenyl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.072


 


173B




(−)-7-(2-chloro-5- (trifluoromethyl) phenyl)-N-(3-fluoro-4- (4-methyl-1H-imidazol- 1-yl) phenyl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.831


 


174A




(−)-7-(2, 5-dichloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.150


 


174B




(+)-7-(2, 5-dichloro-4- methoxyphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.032


 


175A




(+)-7-(5-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.011


 


175B




(−)-7-(5-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.095


 


176




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7- (methoxymethyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.369


 


177




(R)-(24(3-methoxy-4- (4-methyl- 1H-imidazol- 1-yl) phenyl) amino)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) methanol
0.262


 


178A




(+)-7-(4, 5-difluoro-2- (trifluoromethyl) phenyl)-N-(1-(2- methoxypyridin-4-yl) piperidin-4-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.025


 


178B




(−)-7-(4, 5-difluoro-2- (trifluoromethyl) phenyl)-N-(1-(2- methoxypyridin-4-yl) piperidin-4-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.136


 


179A




(−)-7-(3, 5)- difluorophenyl)-N-(6- methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


179B




(+)-7-(3, 5- difluorophenyl)-N-(6- methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.287


 


180A




(−)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-8- methyl-7-(o-tolyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
>3


 


180B




(+)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-8- methyl-7-(o-tolyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.374


 


181A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.009


 


181B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.392


 


182A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.013


 


182B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.176


 


183A




(+)-7-(3, 5- difluorophenyl)-N-(6- methoxy-5-(2- methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


183B




(−)-7-(3, 5- difluorophenyl)-N-(6- methoxy-5-(2- methylpyrimidin-4-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


184A




(−)-7-(3, 5- difluorophenyl)-N-(6- methoxy-5-(1-methyl- 1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


184B




(+)-7-(3, 5- difluorophenyl)-N-(6- methoxy-5-(1-methyl- 1H-pyrazol-4-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


185A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.241


 


185B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.540


 


186A




(+)-7-(2, 4- difluorophenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.018


 


186B




(−)-7-(2, 4- difluorophenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.328


 


187A




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.419


 


187B




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.033


 


188A




(−)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-8- methyl-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2- amine
>3


 


188B




(+)-N-(6-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-8- methyl-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4]oxazin-2- amine
0.275


 


189A




(+)-7-(3, 5- difluorophenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.013


 


189B




(−)-7-(3, 5- difluorophenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.655


 


190




N-(6-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
>3


 


191




N-(6-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-8- methyl-7-(2, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine (racemic)
2.252


 


192A




(−)-6-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl- 1H-imidazol-1-yl) picolinonitrile
>3


 


192B




(+)-6-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-(4-methyl- 1H-imidazol-1-yl) picolinonitrile
0.576


 


193A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.908


 


193B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.035


 


194A




(+)-7, 8-dimethyl-N-(6- (4-methyl-1H-imidazol- 1-yl) pyridin-3-yl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.970


 


194B




(−)-7, 8-dimethyl-N-(6- (4-methyl-1H-imidazol- 1-yl) pyridin-3-yl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
>3


 


195




N-(6-methoxy-5-(1- methyl-1H-pyrazol-4- yl) pyridin-2-yl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
>3


 


196




N-(3-fluoro-6-methoxy- 5-(1-methyl-1H- pyrazol-4-yl) pyridin-2- yl)-8-methyl-7-(3, 4, 5- trifluorophenyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine (racemic)
0.544


 


197




7-(3, 5-difluorophenyl)- N-(3-fluoro-6-methoxy- 5-(1-methyl-1H- pyrazol-4-yl) pyridin-2- yl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine (racemic)
>3


 


198A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
1.114


 


198B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido? [5, 4-b] [1, 4] oxazin-2-amine
0.101


 


199A




(+)-7-(4-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.025


 


199B




(−)7-(4-methoxy-2- methylphenyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.095


 


200




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (phenoxymethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.030


 


201




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (phenoxymethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.143


 


202A




(−)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.167


 


202B




(+)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine 
0.063


 


203A




(+)-5-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl- 1H-imidazol-1-yl) benzonitrile
0.016


 


203B




(−)-5-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl- 1H-imidazol-1-yl) benzonitrile
0.210


 


204A




(−)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7-(3, 5-difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.433


 


204B




(+)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-7-(3, 5-difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.019


 


205A




(+)-5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino)-2-(4-methyl- 1H-imidazol-1-yl) benzonitrile
0.231


 


205B




(−)-5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino)-2-(4-methyl- 1H-imidazol-1-yl) benzonitrile
0.259


 


206A




(+)-7-(3, 5- difluorophenyl)-N-(5- methoxy-6-(4- (trifluoromethyl)-1H- imidazol-1-yl) pyridin- 3-yl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.027


 


206B




(−)-7-(3, 5- difluorophenyl)-N-(5- methoxy-6-(4- (trifluoromethyl)-1H- imidazol-1-yl) pyridin- 3-yl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.704


 


207A




(+)-7-(5-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.010


 


207B




(−)-7-(5-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.096


 


208A




(+)-7-(2-chloro-5- methoxyphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.020


 


208B




(−)-7-(2-chloro-5- methoxyphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.136


 


209A




(+)-7-(2-chloro-4- methoxyphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.021


 


209B




(−)-7-(2-chloro-4- methoxyphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.055


 


210A




(+)-N-(5-chloro-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.041


 


210B




(−)-N-(5-chloro-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
2.342


 


211A




(+)-1-(5-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3- methoxypyridin-2-yl)- 1H-imidazole-4- carbonitrile
0.179


 


211B




(−)-1-(5-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3- methoxypyridin-2-yl)- 1H-imidazole-4- carbonitrile
>3


 


212A




(−)-7-(3, 3- difluorocyclobutyl)-N- (3-methoxy-4-(4- methyl- 1H-imidazol-1- yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.348


 


212B




(+)-7-(3, 3- difluorocyclobutyl)-N- (3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.061


 


213A




(−)-7, 8-dimethyl-N-(4- (4-methyl- 1H-imidazol- 1-yl)-3- (trifluoromethoxy) phenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


213B




(+)-7, 8-dimethyl-N-(4- (4-methyl- 1H-imidazol- 1-yl)-3- (trifluoromethoxy) phenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


214A




(+)-N-(3- (difluoromethyl)-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


214B




(−)-N-(3- (difluoromethyl)-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
2.255


 


215A




(+)-7-(4-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.016


 


215B




(−)-7-(4-methoxy-2- methylphenyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.096


 


216A




(−)-7-(4, 4- difluorocyclohexyl)-N- (3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.320


 


216B




(+)-7-(4, 4- difluorocyclohexyl)-N- (3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.033


 


217




(S)-7- (cyclopropylmethyl)-N- (3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.053


 


218




(S)-7- (cyclopropylmethyl)-N- (5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.039


 


219A




(+)-7-(3, 3- difluorocyclobutyl)-N- (5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.025


 


219B




(−)-7-(3, 3- difluorocyclobutyl)-N- (5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.398


 


220A




(−)-7-(3, 5- difluorophenyl)-N-(4- methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


220B




(+)-7-(3, 5- difluorophenyl)-N-(4- methoxy-5-(4-methyl- 1H-imidazol-1-yl) pyridin-2-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.044


 


221A




(+)-7-(4, 4- difluorocyclohexyl)-N- (5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.024


 


221B




(−)-7-(4, 4- difluorocyclohexyl)-N- (5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.325


 


222A




(+)-N-(3- (difluoromethyl)-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.361


 


222B




(−)-N-(3- (difluoromethyl)-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


223A




(−)-7-(3, 5- difluorophenyl)-8- methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)-3- (trifluoromethoxy) phenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


223B




(+)-7-(3, 5- difluorophenyl)-8- methyl-N-(4-(4-methyl- 1H-imidazol-1-yl)-3- (trifluoromethoxy) phenyl)-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


224




(S)-7-cyclopropyl-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.022


 


225




(S)-7-cyclopropyl-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.033


 


226A




(+)-4-((8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino) benzonitrile
>3


 


226B




(−)-4-((8-methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino) benzonitrile
>3


 


227




(S)-7-cyclobutyl-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido 5, 4-b] [1, 4] oxazin-2- amine
0.019


 


228A




(+)-N-(4-(4-chloro-1H- imidazol- 1-yl)-3- methoxyphenyl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.331


 


228B




(−)-N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.014


 


229A




(−)-N-(5-chloro-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.215


 


229B




(+)-N-(5-chloro-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
2.848


 


230A




(+)-2-methoxy-4-((8- methyl-7-? (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino) benzonitrile
>3


 


230B




(−)-2-methoxy-4-((8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino) benzonitrile
0.717


 


231A




(+)-7-(4, 4- difluorocyclohexyl)-N- (5-methoxy-6-(1- methyl-1H-pyrazol-4- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.342


 


231B




(−)-7-(4, 4- difluorocyclohexyl)-N- (5-methoxy-6-(1- methyl-1H-pyrazol-4- yl) pyridin-3-yl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


232A




(+)-2-(4-methyl-1H- imidazol-1-yl)-5-((8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino) benzonitrile
0.280


 


232B




(−)-2-(4-methyl-1H- imidazol-1-yl)-5-((8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- yl) amino) benzonitrile
0.017


 


233A




(+)-4-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile
0.888


 


233B




(−)-4-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile
>3


 


234




N-(4-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-7, 8- dimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine (racemic)
1.771


 


235




(S)-7-cyclobutyl-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.017


 


236A




(+)-N-(4-methoxy-5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
>3


 


236B




(−)-N-(4-methoxy-5-(4- methyl-1H-imidazol- 1- yl) pyridin-2-yl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.245


 


237A




(−)-4-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2- methoxybenzonitrile
>3


 


237B




(+)-4-((7-(3, 5- difluorophenyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2- methoxybenzonitrile
0.226


 


238A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(2, 2, 2- trifluoroethyl)-7, 8- dihydro-6H-pyrimido [5, 4-6] [1, 41 oxazin-2- amine
0.648


 


238B




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(2, 2, 2- trifluoroethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.066


 


239A




(−)-4-(2-((3 -methoxy-4- (4-methyl-1H-imidazol- 1-yl) phenyl) amino)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H- thiopyran 1, 1-dioxide
0.407


 


239B




(+)-4-(2-((3 -methoxy-4- (4-methyl- 1H-imidazol- 1-yL) phenyl) amino)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-7-yl) tetrahydro-2H- thiopyran 1, 1-dioxide
0.380


 


240




(S)-7-(tert-butyl)-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.021


 


241A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (oxetan-3-yl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.390


 


241B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (oxetan-3-yl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.342


 


242A




(−)-N-(3-methoxy-4-(3- methyl-1H-1, 2, 4- triazol-1-yl) phenyl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.078


 


242B




(+)-N-(3-methoxy-4-(3- methyl-1H-1, 2, 4- triazol-1-yl) phenyl)-8- methyl-7- (trifluoromethyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 41 oxazin-2- amine
1.862


 


243A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(oxetan-3-yl)- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.601


 


243B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(oxetan-3-yl)- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.814


 


244A




(+)-7-(3, 5- difluorophenyl)-N-(3 methoxy-4-(3-methyl- 1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.023


 


244B




(−)-7-(3, 5- difluorophenyl)-N-(3- methoxy-4-(3-methyl- 1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine 
0.935


 


245A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (1-(trifluoromethyl) cyclopropyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.216


 


245B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-methyl-7- (1-(trifluoromethyl) cyclopropyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.022


 


246




(S)-7-(tert-butyl)-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8-methyl- 7, 8-dihydro-6H- pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.024


 


247A




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(1- (trifluoromethyl) cyclopropyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.252


 


247B




(+)-N-(5-methoxy-6-(4- methyl- 1H-imidazol-1- yl) pyridin-3-yl)-8- methyl-7-(1- (trifluoromethyl) cyclopropyl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2- amine
0.005


 


254




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.054


 


255




N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.488


 


256




N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.025


 


257




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8′-methyl- 6′H, 8′H-spiro cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.049


 


258




N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8′-methyl- 6′H, 8′H-spiro cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.324


 


259




N-(5-methoxy-6-(4- methyl-1H-imidazol- 1- yl) pyridin-3-yl)-8′- methyl-6′H, 8′H-spiro [cyclopentane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.073


 


260




N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8′- methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.213


 


261




N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.139


 


262




7, 7, 8-trimethyl-N-(5- (4-methyl-1H-imidazol- 1-yl) pyridin-2-yl)-7, 8- dihydro-6H-pyrimido [5, 4-b] [1, 41 oxazin-2- amine
>3


 


263




8′-methyl-N-(5-(4- methyl-1H-imidazol-1- yl) pyridin-2-yl)-6′H, 8′H-spiro [cyclopentane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine 
>3


 


264




N-(3-methoxy-4-(1- methyl-1H-pyrazol-4- yl) phenyl)-8′-methyl- 6′H, 8′H-spiro [cyclopentane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.260


 


265




N-(5-(4-methyl-1H- imidazol-1-yl) pyridin- 2-yl)-6′H, 8′H-spiro cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
>3


 


266




N-(5-methoxy-6-(1- methyl-1H-pyrazol-4- yl) pyridin-3-yl)-8′- methyl-6′H, 8′H-spiro [cyclopentane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
>3


 


267




N-(3-methoxy-4-(1- methyl-1H-pyrazol-4 -yl phenyl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.822


 


268




N-(5-methoxy-6-(1- methyl-1H-pyrazol-4- yl) pyridin-3-yl)-8′- methyl-6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
2.784


 


269




N-(3-methoxy-4-(1- methyl-1H-pyrazol-4- yl) phenyl)-8′-methyl- 6′H, 8′H-spiro [cyclopropane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.703


 


270




N-(5-methoxy-6-(1- methyl-1H-pyrazol-4- yl) pyridin-3-yl)-7, 7, 8- trimethyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


271




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8′-methyl- 6′H, 8′H-spiro [oxetane- 3, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.364


 


272




N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8′- methyl-6′H, 8′H-spiro [oxetane-3,7′-pyrimido [5, 4-b] [1,4] oxazin]-2′- amine
0.537


 


273




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine 
0.111


 


274




N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8′- methyl-2, 3, 5, 6- tetrahydro-6′H, 8′H- spiro [pyran-4, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.295


 


275




N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8-(2, 2, 2- trifluoroethyl)-2, 3, 5, 6-tetrahydro-6′H, 8′H- spiro [pyran-4, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.351


 


276




3, 3-difluoro-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-8-methyl-6′H, 8′H-spiro [cyclobutane- 1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine 
0.056


 


277




N-(4-(4-chloro-1H- imidazol-1-yl)-3- methoxyphenyl)-3, 3- difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane- 1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine 
0.097


 


278




3, 3-difluoro-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl- 6′H, 8′H-spiro [cyclobutane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.092


 


279




N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-8′-methyl- 6′H, 8′H-spiro [cyclopentane-1, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
0.254


 


289A




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine 
0.235


 


289B




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.157


 


290A




(−)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.071


 


290B




(+)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.151


 


291




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a-methyl- 6a, 7, 8, 9-tetrahydro- 6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.131


 


292




(S)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a-methyl- 6a, 7, 8, 9-tetrahydro- 6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.438


 


293




(R)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a-methyl- 6a, 7, 8, 9-tetrahydro- 6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.276


 


294




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a-methyl- 6a, 7, 8, 9-tetrahydro- 6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.080


 


295




(S)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 9, 10- tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.496


 


296




(R)-N-(3-methoxy-4-(4- methyl-1H-imidazol-1- yl) phenyl)-7- (methoxymethyl)-8- methyl-7, 8-dihydro- 6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.759


 


297




(S)-8, 8-difluoro-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.099


 


298




(S)-8, 8-difluoro-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H- pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.177


 


299




(S)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 9, 10- tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine
>3


 


300




(R)-N-(3-fluoro-4-(4- methyl-1H-imidazol-1- yl) phenyl)-6a, 7, 9, 10- tetrahydro-6H-[1, 4] oxazino [4, 3-d] pyrimido [5, 4-b] [1, 4] oxazin-2-amine
0.781


 


301A




(+)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8′- methyl-2, 3, 5, 6- tetrahydro-6′H, 8′H- spiro [pyran-4, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine 
2.735


 


301B




(−)-N-(5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl)-8′- methyl-2, 3, 5, 6- tetrahydro-6′H, 8′H- spiro [pyran-4, 7′- pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine
1.162


 


302A




(+)-2-((5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl) amino)-6, 6a, 7, 8- tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one
>3


 


302B




(−)-2-((5-methoxy-6-(4- methyl-1H-imidazol-1- yl) pyridin-3-yl) amino)-6, 6a, 7, 8- tetrahydro-9H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-9-one
2.904


 


303




(R)-8, 8-difluoro-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.131


 


304A




(−)-7, 7-difluoro-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine 
0.274


 


304B




(+)-7, 7-difluoro-N-(3- methoxy-4-(4-methyl- 1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9- tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.075


 


305A




(+)-7, 7-difluoro-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H- pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.132


 


305B




(−)-7, 7-difluoro-N-(5- methoxy-6-(4-methyl- 1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H- pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine
0.582

## Claims

1. A compound of Formula (I)



or a pharmaceutically acceptable salt thereof,
wherein:
R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene 3- to 7-membered monocyclic heterocycle, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, oxo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2-C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2-NH—C1-C4 alkyl, —S(O)2-N(C1-C4 alkyl)2, —NH—S(O)2-C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2-C1-C4 alkyl, C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2 and -phenoxy, provided that phenyl is not substituted with one or more oxo;
Y is phenyl or pyridinyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4-alkoxy, —NH—C1-C4 alkyl, —OH and —NH2; and
Z is —CN or nitrogen-containing 3- to 7-membered monocyclic heterocycle which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle.

2. A compound of claim 1, wherein:
R is phenyl, —C1-C4 alkylene-phenyl, oxetanyl, C1-C6 alkyl, —C3-C8 monocyclic cycloalkyl, 3- to 7-membered monocyclic heterocycle, —C1-C4 alkylene 3- to 7-membered monocyclic heterocycle or —C1-C4 alkylene-C3-C8 monocyclic cycloalkyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkyl, —NH—C1-C4 alkyl, —NHC(O)—C1-C4 alkyl, —C(O)NH—C1-C4 alkyl, —C(O)N(C1-C4 alkyl)2, hydroxy-substituted C1-C4 alkyl, —S(O)2-C1-C4 alkyl, —S(O)2-halo-substituted C1-C4 alkyl, —S(O)2-NH—C1-C4 alkyl, —S(O)2-N(C1-C4 alkyl)2, —NH—S(O)2-C1-C4 alkyl, —N(C1-C4 alkyl)-S(O)2-C1-C4 alkyl, C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, 3- to 7-membered monocyclic heterocycle, —C3-C8 monocyclic cycloalkyl, —C(O)NH2;
Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, amino-substituted C1-C4 alkoxy, —CN, (C1-C4 alkyl)2N—C1-C4 alkoxy, —NH—C1-C4 alkyl, —OH and —NH2; and
Z is pyridinyl or imidazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —NH2, —OH, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy, —OCF3 and 3- to 7-membered monocyclic heterocycle;
or a pharmaceutically acceptable salt thereof.

3. The compound of claim 2, wherein:
R is phenyl, tetrahydropyranyl, —C1-C4 alkyl, —C1-C4 alkylene-phenyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo, —C1-C4 alkyl, halo-substituted C1-C4 alkyl and halo-substituted C1-C4 alkoxy;
Y is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and
Z is pyridinyl or imidazolyl, each of which is substituted with one —C1-C4 alkyl or halo;
or a pharmaceutically acceptable salt thereof.

4. The compound of claim 2, wherein:
R is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkyl;
Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and
Z is imidazolyl substituted with methyl or halo;
or a pharmaceutically acceptable salt thereof.

5. The compound of claim 2, wherein:
R is phenyl which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkyl;
Y is phenyl substituted with one or more substituents independently selected from the group consisting of halo and —C1-C4 alkoxy; and
Z is pyridinyl substituted with methyl or chloro;
or a pharmaceutically acceptable salt thereof.

6. A compound selected from the group consisting of:
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(R)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(−)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(2-methylpyridin-4-yl)phenyl)-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-fluoro-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine;
7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-benzyl-N-(3-fluoro-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-benzyl-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethoxy) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine;
(+)-7-(2-chlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-2-(2-chlorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-1-methyl-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine;
7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine;
(+)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine;
(−)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-dichlorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4-fluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(tetrahydro-2H-pyran-4-yl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(5-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-bis (trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine;
(+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile;
(−)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile;
(+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-5-((7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile;
(+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-1-(5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-3-methoxypyridin-2-yl)-1H-imidazole-4-carbonitrile;
(+)-7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile;
(S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-4-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-methoxybenzonitrile;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(methoxymethyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine
(−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; and
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
or a pharmaceutically acceptable salt thereof.

7. The compound of claim 6, selected from the group consisting of:
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(S)—N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl)phenyl)-8-methyl-7-(3,4,5-trifluorophenyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-7-(3,5-difluorophenyl)-N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
(+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl)phenyl)-7-(o-tolyl)-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
N-(3-methoxy-4-(2-methylpyridin-4-yl)phenyl)-8-methyl-7-phenyl-7,8-dihydro-6H-pyrimido[5,4-b][1,4]oxazin-2-amine;
7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-benzyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-difluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2-(trifluoromethyl) phenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(4-fluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-benzyl-N-(3-methoxy-4-(2-methylpyridin-4-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4-fluorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7,8-dihydro-6H-pyrimido [5, 4-b] [1,4] oxazin-2-amine;
(+)-7-(4-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-dichlorophenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-fluoro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-chloro-2-(trifluoromethyl) phenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-8-methyl-N-(4-(4-methyl-1H-imidazol-1-yl) phenyl)-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-fluoro-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4, 5-difluorophenyl)-N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(o-tolyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-1-methyl-2-(2, 2, 2-trifluoroethyl)-2, 3-dihydro-1H-pyrido [3, 4-b] [1, 4] oxazin-7-amine;
(+)-7-(2, 5-dichloro-4-methoxyphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4, 5-difluoro-2-(trifluoromethyl) phenyl)-N-(1-(2-methoxypyridin-4-yl) piperidin-4-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(3, 4, 5-trifluorophenyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2, 4-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-methoxy-2-methylphenyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(phenoxymethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7, 8-dimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-5-((7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino)-2-(4-methyl-1H-imidazol-1-yl) benzonitrile;
(+)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(5-methoxy-6-(4-(trifluoromethyl)-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(5-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-5-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-7-(2-chloro-4-methoxyphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-chloro-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7-(3, 5-difluorophenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 3-difluorocyclobutyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4-methoxy-2-methylphenyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4, 4-difluorocyclohexyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(cyclopropylmethyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(cyclopropylmethyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 3-difluorocyclobutyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(4-methoxy-5-(4-methyl-1H-imidazol-1-yl) pyridin-2-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(4, 4-difluorocyclohexyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-cyclopropyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-cyclopropyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-cyclobutyl-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(−)-2-(4-methyl-1H-imidazol-1-yl)-5-((8-methyl-7-(trifluoromethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-yl) amino) benzonitrile;
(S)-7-cyclobutyl-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(2, 2, 2-trifluoroethyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(tert-butyl)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-7-(3, 5-difluorophenyl)-N-(3-methoxy-4-(3-methyl-1H-1, 2, 4-triazol-1-yl) phenyl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
(S)-7-(tert-butyl)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine; and
(+)-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8-methyl-7-(1-(trifluoromethyl) cyclopropyl)-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
or a pharmaceutically acceptable salt thereof.

8. A compound of Formula (II)



or a pharmaceutically acceptable salt thereof,
wherein:
R1 is —C1-C4 alkyl which is unsubstituted or substituted with one or more -halo;
each R2 is independently C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —CN, —C1-C4 alkyl, halo-substituted C1-C4 alkyl, —C1-C4 alkoxy and oxo;
Y is phenyl or pyridinyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo, —C1-C4 alkoxy, halo-substituted C1-C4 alkoxy, —C1-C4 alkyl and halo-substituted C1-C4 alkyl; and
Z is imidazolyl or pyrazolyl, each of which is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl.

9. The compound of claim 8, wherein:
R1 is methyl;
R2 is independently C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more substituents independently selected from the group consisting of -halo and oxo;
Y is phenyl or pyridinyl, each of which is substituted with one or more substituent independently selected from the group consisting of -halo and —C1-C4 alkoxy; and
Z is imidazolyl or pyrazolyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl;
or a pharmaceutically acceptable salt thereof.

10. The compound of claim 8, wherein:
R1 is methyl;
R2 is independently C1-C6 alkyl, or R1 and one R2 together with the intervening atoms form a nitrogen-containing 4- to 6-membered nonaromatic heterocycle and the other R2 is hydrogen or C1-C4 alkyl, or both R2 together with the intervening atom form a —C3-C8 monocyclic cycloalkyl or an oxygen-containing 3- to 6-membered nonaromatic heterocycle, wherein the nitrogen-containing 4- to 6-membered nonaromatic heterocycle, the —C3-C8 monocyclic cycloalkyl or the oxygen-containing 3- to 6-membered nonaromatic heterocycle is unsubstituted or substituted with one or more -halo;
Y is phenyl or pyridinyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkoxy; and
Z is imidazolyl or pyrazolyl, each of which is substituted with one or more substituents independently selected from the group consisting of -halo and —C1-C4 alkyl;
or a pharmaceutically acceptable salt thereof.

11. The compound of claim 8 selected from the group consisting of:
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(1-methyl-1H-pyrazol-4-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopentane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-2, 3, 5, 6-tetrahydro-6′H, 8′H-spiro [pyran-4, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
N-(4-(4-chloro-1H-imidazol-1-yl)-3-methoxyphenyl)-3, 3-difluoro-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
3, 3-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(−)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(+)-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(S)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(R)—N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(R)—N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a-methyl-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(S)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(S)-8, 8-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(R)-8, 8-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
(+)-7, 7-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine; and
(+)-7, 7-difluoro-N-(5-methoxy-6-(4-methyl-1H-imidazol-1-yl) pyridin-3-yl)-6a, 7, 8, 9-tetrahydro-6H-pyrimido [5, 4-b] pyrrolo [1, 2-d] [1, 4] oxazin-2-amine;
or a pharmaceutically acceptable salt thereof.

12. The compound of claim 11, selected from the group consisting of:
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-fluoro-4-(4-methyl-1H-imidazol-1-yl) phenyl)-7, 7, 8-trimethyl-7, 8-dihydro-6H-pyrimido [5, 4-b] [1, 4] oxazin-2-amine;
N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclopropane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine; and
3, 3-difluoro-N-(3-methoxy-4-(4-methyl-1H-imidazol-1-yl) phenyl)-8′-methyl-6′H, 8′H-spiro [cyclobutane-1, 7′-pyrimido [5, 4-b] [1, 4] oxazin]-2′-amine;
or a pharmaceutically acceptable salt thereof.

13. A pharmaceutical composition comprising a pharmaceutically acceptable carrier or vehicle and an effective amount of a compound or a pharmaceutically acceptable salt of a compound of claim 1.

14. A method for treating a neurodegenerative disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of claim 1.

15. The method of claim 14, wherein the neurodegenerative disease is panic disorder, obsessive compulsive disorder, delusional disorder, drug-induced psychosis, post-traumatic stress disorder, age-related cognitive decline, attention deficit/hyperactivity disorder, personality disorder of the paranoid type, personality disorder of the schizoid type, dyskinesia, choreiform condition, psychosis associated with Parkinson's disease, psychotic symptoms associated with Alzheimer's disease, mood disorder, or dementia.

16. A method for improving an impaired cognitive function, comprising administering to a subject having impaired cognitive function an effective amount of a compound or a pharmaceutically acceptable salt of claim 1.

17. A pharmaceutical composition comprising a pharmaceutically acceptable carrier or vehicle and an effective amount of a compound or a pharmaceutically acceptable salt of a compound of claim 8.

18. A method for treating a neurodegenerative disease, comprising administering to a subject in need thereof an effective amount of a compound or a pharmaceutically acceptable salt of a compound of claim 8.

19. The method of claim 17, wherein the neurodegenerative disease is panic disorder, obsessive compulsive disorder, delusional disorder, drug-induced psychosis, post-traumatic stress disorder, age-related cognitive decline, attention deficit/hyperactivity disorder, personality disorder of the paranoid type, personality disorder of the schizoid type, dyskinesia, choreiform condition, psychosis associated with Parkinson's disease, psychotic symptoms associated with Alzheimer's disease, mood disorder, or dementia.

20. A method for improving an impaired cognitive function, comprising administering to a subject having impaired cognitive function an effective amount of a compound or a pharmaceutically acceptable salt of a compound of claim 8.