U.S. flagAn official website of the United States government
                    Here's how you know **Official websites use .gov**
                            
                            A **.gov** website belongs to an official government organization in the United States.
 **Secure .gov websites use HTTPS**
                            
                            A **lock** (                            
                              A locked padlock                                                      
                            
                            ) or **https://** means you’ve safely connected to the .gov website. Share sensitive information only on official, secure websites.


Menu Agricultural Research Service
						
                    U.S. DEPARTMENT OF AGRICULTURE
 Crop Germplasm Research: College Station, TX
 close



    Research

                    Research Projects
                                    Publications
                                    Collaborations
                                    News
                People

                    Staff Listing
                                    CareersSearch small
                    Search
            
            ARS Home
                                About ARS
                                Contact Us




ARS Home Plains Area College Station, Texas Southern Plains Agricultural Research Center Crop Germplasm Research Research Publications at this Location





- ARS National Programs
- Search for a scientific manuscript
- Search for a research project
- ARS Software
- Programs and Projects
- Collaborations
- Subjects of Investigation
- Publications

Title:   Author  item
                                            Hinze, Loriitem
                                            HULSE-KEMP, AMANDA - Texas A&M Universityitem
                                            WILSON, IAIN - Commonwealth Scientific And Industrial Research Organisation (CSIRO)item
                                            ZHU, QIAN-HAO - Commonwealth Scientific And Industrial Research Organisation (CSIRO)item
                                            LLEWELLYN, DANNY - Commonwealth Scientific And Industrial Research Organisation (CSIRO)item
                                            TAYLOR, JEN - Commonwealth Scientific And Industrial Research Organisation (CSIRO)item
                                            SPRIGGS, ANDREW - Commonwealth Scientific And Industrial Research Organisation (CSIRO)item
                                            Fang, Daviditem
                                            Ulloa, Mauricioitem
                                            Burke, Johnitem
                                            GIBAND, MARC - Centro De Cooperation Internationale En Recherche Agronomique Pour Le Development (CIRAD)item
                                            LACAPE, JEAN-MARC - Centro De Cooperation Internationale En Recherche Agronomique Pour Le Development (CIRAD)item
                                            VAN DEYNZE, ALLEN - University Of Californiaitem
                                            UDALL, JOSHUA - Brigham Young Universityitem
                                            Scheffler, Jodiitem
                                            HAGUE, STEVE - Texas A&M Universityitem
                                            PEPPER, ALAN - Texas A&M Universityitem
                                            Frelichowski, James

                                                         - *Jim*item
                                            LAWLEY, CINDY - Illumina, Incitem
                                            JONES, DONALD - Cotton, Incitem
                                            Percy, Richarditem
                                            STELLY, DAVID - Texas A&M University
  Submitted to: National Cotton Council Beltwide Cotton Conference
                                    Publication Type: Abstract Only
                                    Publication Acceptance Date: 1/6/2016
                                    Publication  Date: 5/18/2016
                                    Citation: Hinze, L.L., Hulse-Kemp, A., Wilson, I., Zhu, Q., Llewellyn, D., Taylor, J., Spriggs, A., Fang, D.D., Ulloa, M., Burke, J.J., Giband, M., Lacape, J., Van Deynze, A., Udall, J., Scheffler, J.A., Hague, S., Pepper, A., Frelichowski, J.E., Lawley, C., Jones, D., Percy, R.G., Stelly, D. 2016. Measuring diversity in Gossypium hirsutum using the CottonSNP63K Array. In: Proceedings of the Beltwide Cotton Conferences, January 5-7, 2016, New Orleans, Louisiana. 2016 CDROM.Interpretive Summary:
                                Technical Abstract: A CottonSNP63K array and accompanying cluster file has been developed and includes 45,104 intra-specific SNPs and 17,954 inter-specific SNPs for automated genotyping of cotton (Gossypium spp.) samples.  Development of the cluster file included genotyping of 1,156 samples, a subset of which were identified as improved or wild G. hirsutum.  In our diversity study of 402 Gossypium samples genotyped with the CottonSNP63K array, over half (38,822) of the SNPs were polymorphic.  The SNPs separated G. hirsutum samples from other tetraploids and diploids and distinguished between wild and improved types within G. hirsutum.  Here we report the first diversity analysis with large numbers of SNP markers over a wide range of cotton germplasm, particularly within improved cultivars of G. hirsutum.  The polymorphism profiles and distribution results have significant implications for breeding and utilizing the CottonSNP63K array in the US and worldwide.


Return to top


Connect with ARS Sign up


ARS Home
                            USDA.gov
                            Plain Writing
                            Policies & Links
                            Civil Rights Statements
                            FOIA
                            Accessibility Statement
                            Privacy Policy
                            Non-Discrimination Statement
                            Quality of Information
                            USA.gov
                            WhiteHouse.gov