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Title:   Author  item
                                            Liu, Ge

                                                         - *George*item
                                            XU, LINGYANG - University Of Marylanditem
                                            HOU, YALI - Chinese Academy Of Sciencesitem
                                            Bickhart, Derekitem
                                            SONG, JIUZHOU - University Of Marylanditem
                                            Van Tassell, Curtis

                                                         - *Curt*item
                                            Sonstegard, Tad
  Submitted to: BA-UMD Symposium
                                    Publication Type: Abstract Only
                                    Publication Acceptance Date: 9/18/2013
                                    Publication  Date: 10/18/2013
                                    Citation: Liu, G., Xu, L., Hou, Y., Bickhart, D.M., Song, J., Van Tassell, C.P., Sonstegard, T.S. 2013. A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle. BA-UMD Symposium. The University of Maryland/Beltsville ARS 3rd Annual Symposium.Interpretive Summary:
                                Technical Abstract: Gastrointestinal (GI) nematode infections are a worldwide threat to animal health and production. In this study, we performed a genome-wide association study between copy number variations (CNV) and resistance to GI nematodes in an Angus cattle population. Using a linear regression analysis, we identified one deletion CNV which reaches genome-wide significance after Bonferroni correction. With multiple mapped human olfactory receptor genes but no annotated bovine genes in the region, this significantly associated CNV displays high population frequencies (58.26%) with a length of 104.8 kb on chr7. We further investigated the linkage disequilibrium (LD) relationships between this CNV and its nearby SNPs and genes. The underlining haplotype blocks contain immune related genes such as ZNF496 and NLRP3. As this CNV co-segregates with linked SNPs and associated genes, we suspect it could contribute to the detected variations in gene expression and thus differences in host parasite resistance.


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