# Patent

## Title
Bovine herpes virus vaccine with multiple mutations

## Abstract

A BHV-1 mutant virus has been made that incorporates into a single virus two or more deletions in one or more of three genes—glycoprotein N, glycoprotein E and Us9. Specifically, a BHV-1 UL49.5Δ30-32 CT-null virus was made and tested. This mutant virus was then used to incorporate additional changes, e.g., the glycoprotein E cytoplasmic-tail deletion, the Us9 deletion, or both. This triple mutant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus will be superior to the current BHV-1 mutants because the mutant virus will not be shed following reactivation, will be a DIVA based on gE CT-specific serum antibodies, and will induce better protective response by inducing higher SN titers and better cellular immune response. This new virus will have sufficient viral replication in the nasal epithelium and will be a good vaccine for protection of cattle from BHV-1. The new mutant viruses can also be used as vectors for exogenous genes.

## Background
The benefit of the Jun. 27, 2011 filing date of U.S. provisional application Ser. No. 61/501,545 is claimed under 35 U.S.C. §119(e).


This invention was made with United States government support under grant nos. USDA 2007-35204-05420 and 2009-35204-05200 awarded by the United States Department of Agriculture. The government has certain rights in this invention.


This invention pertains to a recombinant BHV-1 vaccine virus that incorporates into a single virus two or more deletions in one or more of three genes—UL49.5 (gN), gE and Us9.
Bovine herpesvirus type 1 (BHV-1) is an important pathogen of cattle that can cause severe respiratory tract infection known as infectious bovine rhinotracheitis (IBR). IBR can cause abortion in pregnant cows [1-3; see also, U.S. Pat. No. 6,221,360] and a substantial drop in milk and meat production. BHV-1 is also an important component of the Bovine Respiratory Disease Complex (BRDC or “Shipping fever”) [3,4]. During primary infection, BHV-1 replicates in the nasal and upper respiratory tract epithelium and transiently depresses cell-mediated immunity and evades the host cytotoxic CD8+ T cell recognition by down regulating the cell surface expression of major histocompatibility complex class I (MHC-I) molecules [10,11,15]. This immunosuppression combined with lesions in the upper respiratory tract facilitates secondary bacterial infections and pneumonia [3]. Both IBR disease and BRDC cause considerable losses for the cattle industry worldwide and cost the US cattle industry at least $1 billion dollars annually [2].
Another problem with BHV-1 infection in cattle is that the virus establishes a life-long latency in trigeminal ganglia (TG) following the primary infection [3]. During the primary infection, the virus enters the sensory nerve endings (axon terminals) of the trigeminal nerve in the nasopharynx and is transported up the axon retrogradely to the neuronal cell bodies in the TG where BHV-1 establishes life-long latency [3]. Periodically throughout the life of the animal, the latent virus in the TG reactivates due to immunosuppression or stress. Following reactivation, the virus is transported down the axon to the primary infection sites in the nose and/or eye. The viral infection causes ocular and nasal virus shedding [3] which facilitates virus transmission to other cattle. Thus this reactivation followed by shedding maintains an ongoing viral infection in susceptible cattle populations.
In BHV-1-infected cells, envelope protein UL49.5 (a BHV-1 homolog of envelope glycoprotein N (gN)) was found to block the Transporter associated with Antigen Presentation (TAP) function required for the display of viral peptides on the cell surface. To promote the immune response from the host, the MHC-I molecules must be loaded with viral peptides. BHV-1 UL49.5 binds to the TAP complex, blocks the TAP conformational changes, and degrades TAP [10]. Consequently, peptides are not loaded onto the MHC-I molecules in the endoplasmic reticulum (ER) which is required for the MHC-I transport to cell surface and cell surface expression [10,11]. This results in transient MHC-I down-regulation in a susceptible host and helps the virus evade destruction by the CD8+ T cells at an early stage of virus infection of the host [3].
BHV-1 mutants have been made and analyzed for use as vaccines. One commercial vaccine is based on a deletion of the glycoprotein E (gE) gene. Following intranasal infection, both the gE-ORF-deleted (the entire gE gene deleted) and the gE cytoplasmic tail (CT)-truncated BHV-1 recombinant viruses were determined to be equally attenuated in calves and to have defective anterograde axonal transport [32,36]. Therefore, following dexamethasone-induced reactivation in the TG, no nasal virus shedding in calves infected with either virus was seen (32). Importantly, BHV-1 gE cytoplasmic tail-deleted virus-infected calves have two-fold higher serum neutralizing (SN) titers relative to calves infected with the entire gE ORF-deleted [32]. In addition, a BHV-1 gE-specific antibody raised against residues 366-575, which includes the entire gE cytoplasmic tail (453-575), was shown to immunoprecipitate BHV-1 gE [28,39].
The Us9-deleted BHV-1 is also known to be attenuated in calves. This mutated virus has defective anterograde transport in calves, and thus no virus shedding following dexamethesone-induced reactivation [43]. Importantly, calves infected with the Us9-deleted BHV-1 have similar SN titers relative to the wild-type BHV-1-infected calves [43]. Recently, a BHV-1 mutant virus lacking only the Us9 acidic portion, domain residues 83-90, was shown to be defective in axonal anterograde transport [40].
Other genetically engineered gene-deleted vaccines have been developed that are attenuated and that can be serologically distinguished from wild-type field strains. Numerous viral mutants (e.g., gC-, gE-, gG-, deleted [33, 37, 43] and thymidine kinase (TK)-deleted [25,38]) have been constructed and analyzed for the in vivo pathogenic properties, reactivation properties, and immunogenicity. [See also, U.S. Pat. No. 5,151,267] Studies with gC-, gG-, or TK-deleted viruses showed that these mutant viruses either reactivate from latency and/or retain some degree of virulence [37, 38]. The genetically engineered gE gene-deleted IBR marker vaccine has become increasingly used because the vaccine virus is attenuated and, unlike the traditional Modified Live Viruses (MLVs), the vaccine virus can be serologically distinguished from the wild-type virus. In addition, the gE gene-deleted vaccine virus has defective anterograde neuronal transport from neuronal cell bodies in the trigeminal ganglia (TG) to nerve endings in the nasal epithelium, and the virus is not shed in the nose following latency reactivation in the TG [3, 33, 37, 38, 43; see also, U.S. Pat. Nos. 6,403,097; 6,284,251; 6,086,902; and 5,676,951]. The MLVs and gE gene-deleted vaccines have been shown to be immunosuppressive and not optimally efficacious [17, 41, 42]. For example, comparative vaccine efficacy studies showed that relative to gC- and gG-deleted viruses, the gE-deleted virus is less efficacious [37]. A gE cytoplasmic tail (CT)-truncated virus was shown to be equally attenuated in animals relative to gE-ORF-deleted marker vaccine, and had no nasal virus shedding following reactivation [32].
Another problem that must be addressed by a vaccine for a BHV-1 virus infection is the immunosuppressive ability of the BHV-1 virus. Normally, proteosomally processed viral proteins yield peptides that bind to TAP heterodimer, consisting of the subunits TAP1 and TAP2 [5-7]. Following viral peptide binding, the TAP1/TAP2 heterodimer undergoes conformational changes [5-7]. Subsequently, peptides are transported into the ER and loaded onto MHC-I molecules to form MHC/peptide complexes which are transported to and presented on the antigen-presenting cell surface [8, 9]. However, in BHV-1-infected cells, envelope protein UL49.5 (a homolog to and also known as glycoprotein N (gN)) binds to TAP, interferes with its peptide transport function and also degrades the TAP [10,11]. Consequently, BHV-1 interferes with the MHC class I antigen presentation pathway, and during the initial phase of viral infection, escapes host cellular immune surveillance and elimination [9,11-15]. Modified live vaccines (MLV) against BHV-1 including genetically engineered gE-deleted marker vaccines are being used for vaccination against BHV-1. However, problems associated with BHV-1 infection in the vaccinated animals exist, especially in the feedlot. Since both the traditional and gE-deleted MLVs have wild-type UL49.5, these vaccines like the wild-type virus, are transiently immunosuppressive. Therefore, there is a need for further improvement of the current MLVs [16-19].
Alphaherpesvirus UL49.5 and gM homologs are associated with cellular and virion membranes and the UL49.5 (gN) homologs form complexes with envelope glycoprotein gM [20-22]. BHV-1 UL49.5 predicted ORF is composed of an N-terminal signal sequence of 22 amino acids (aa), an extracellular luminal domain of 32 aa, a transmembrane (TM) domain of 25 aa, and a short cytoplasmic tail (CT) of 17 aa [10,22,23]. A BHV-1 UL49.5 CT-truncated virus lacking the cytosolic 17 amino acids has been shown to no longer degrade bovine TAP molecules, but to retain the TAP inhibition and MHC-I down-regulation functions [15].
Using N-terminal and C-terminal truncated versions of BHV-1 UL49.5 expressed in a Baculovirus expression vector system, UL49.5 luminal domain residues 23-32 and UL49.5 cytoplasmic tail residues 94-96 were found to be essential for UL49.5-mediated degradation of human TAP [24]. However, UL49.5 luminal domain residues 28-32 alone are sufficient for human TAP inhibition and down-regulation of human MHC-I surface expression [24].
We have developed a recombinant BHV-1 vaccine virus that incorporates into a single virus at least two deletions in one or more of three genes—UL49.5 (also called herein “glycoprotein N” or “gN”), gE and Us9. Specifically, we made and tested a BHV-1 UL49.5Δ30-32 CT-null virus. We then used this mutant virus to incorporate additional deletions, e.g., the gE cytoplasmic-tail deletion, Us9 deletion, or both. This triple mutant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus is believed to be superior to current BHV-1 mutants because this mutant virus will not be shed following reactivation, will be serologically distinguishable from wildtype, and will induce better protective response by inducing quicker and higher SN titers and cellular immune responses. We will test the new mutant viruses in rabbits for viral replication in the nasal epithelium and for differential serological marker properties relative to wild-type BHV-1. We have verified that this BHV-1 UL 49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus has the expected deletions, and that these deletions are stable through at least five serial passages.
We have constructed BHV-1 UL49.5 luminal domain mutants with a short sequence deletion using a BHV-1 UL49.5 cytoplasmic tail (CT) null virus or wt BHV-1 as a backbone, and analyzed their TAP inhibition and MHC-I molecule surface expression properties in infected MDBK cells relative to wt BHV-1. The results demonstrated that UL49.5 residues 30 to 32 are essential for the BHV-1 UL49.5-mediated TAP inhibition/MHC-I down-regulation function. The mutant UL49.5 lacking luminal domain residues 30-32 was shown to abolish the TAP1 degradation and the TAP1-mediated MHC-I down-regulation. Most notably, in a calf infection and challenge experiment, we found the following: (i) BHV-1 UL49.5Δ30-32 CT-null virus replicated efficiently in the nasal epithelium; (ii) a 2-fold increase in serum neutralization (SN) titers was seen in BHV-1 UL49.5Δ30-32 CT-null virus-infected calves relative to the wild-type BHV-1 infected calves both at 21-days post infection and at 2 weeks post challenge; and iii) a 3-fold (270%) and 50% increase was seen in CD8+ cell proliferation in BHV-1 UL49.5Δ30-32 CT-null virus-infected calves relative to the wild-type BHV-1 infected calves at 7 days post-infection and 7 days post wild-type BHV-1 challenge, respectively.



BRIEF DESCRIPTION OF DRAWINGS
FIG. 1A illustrates the predicted amino acid (aa) sequences of BHV-1 UL49.5 open reading frame (ORF) (SEQ ID NO:34), with the bold letters indicating the UL49.5 cytoplasmic tail residues and the underlined region indicating the UL49.5 luminal domain residues. In the UL49.5Δ30-32 CT-null mutant, the UL49.5 residues 30RRE32 of the luminal domain are deleted, along with the UL49.5 cytoplasmic tail residues 80RL81. In addition, UL49.5 residues 82M through 96G are not expressed due to an amber mutation replacing the 82M to a stop codon.
FIG. 1B illustrates a schematic drawing showing the wt UL49.5 with the luminal domain residues listed (SEQ ID NO:35), and residues 30RRE32 italicized and bolded.
FIG. 1C illustrates a schematic drawing showing the UL49.5 CT-null the luminal domain residues listed (SEQ ID NO:35), and residues 30RRE32 italicized and bolded.
FIG. 1D illustrates a schematic drawing showing the UL49.5Δ30-32 CT-null mutant showing the luminal domain residues remaining after the deletion of residues 30-32 (SEQ ID NO:36).
FIG. 2 illustrates the DNA sequence of wild type BHV-1 UL49.5 (SEQ ID NO:37) and shows the changes to generate BHV-1 UL49.5 CT-null, i.e., the deletion of nucleotides 238 to 244 and the mutation of nucleotides 246 and 247 to AA to introduce a strong stop codon TAA.
FIG. 3 illustrates the strategy used to design PCR primers for generating the BHV-1 UL49.5 CT-null mutant by showing the relevant section of the UL49.5 peptide (SEQ ID NO:39) and DNA sequence (SEQ ID NO:38), and the forward (SEQ ID NO:2) and reverse (SEQ ID NO:3) primer pair.
FIG. 4 illustrates the strategy used to design the PCR primers for generating the BHV-1 UL49.5Δ30-32 CT-null mutant by showing the relevant section of the UL49.5 peptide (SEQ ID NO:41) and DNA sequence (SEQ ID NO:40), and the forward (SEQ ID NO:4) and reverse (SEQ ID NO:5) primer pair.
FIG. 5 illustrates the results of an immunoblotting analysis of mutant UL49.5 expressed in the infected cells and incorporated in the virion envelope by various UL49.5 mutant viruses, including uninfected (Mock), BHV-1 wt, BHV-1 CT-null, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ30-32, and BHV-1 UL49.5 30AAA32. The virus-infected cell lysates or partially purified virions were separated by a 10-20% gradient SDS-PAGE and incubated with rabbit anti-BHV-1 α-UL49.5 specific antibody. Equal amounts of the extracted cell lysates or virions were loaded, and α-tublin was used as a control.
FIG. 6 illustrates the results of an analysis of gM-UL49.5 interaction by radioimmunoprecipitation assay (RIPA). 35S-labeled lysates from the mock-infected or virus-infected MDBK cells (uninfected (Mock), BHV-1 wt, BHV-1 CT-null, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ30-32, and BHV-1 UL49.5 30AAA32 were immuno-precipitated with rabbit anti UL49.5- (top two panels) or anti gM-specific polyclonal serum (bottom two panels), separated by SDS-PAGE, and visualized by autoradiography. Unprocessed gM (pgM, marked with an arrow) and processed gM are marked.
FIG. 7A illustrates the average plaque size measured at 48 h post infection (hpi) of various BHV-1 UL49.5 mutants (BHV-1 wt, BHV-1 CT-null, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ30-32, and BHV-1 UL49.5 30AAA32) in MDBK cells. Average plaque diameters of 50 randomly selected plaques are shown as mean±standard deviation.
FIG. 7B illustrates the one-step growth kinetics of BHV-1 wt and three representative BHV-1 UL49.5 mutants (UL49.5Δ30-32, UL49.5Δ37-40 and UL49.5Δ43-46) in the CT-null backbone. Each data point represents the average of duplicate samples obtained from separate infections.
FIG. 8A illustrates the results of an analysis of transporter associated with antigen processing (TAP) peptide transport function in various BHV-1 UL49.5 mutant-infected cells. The mock-, BHV-1 UL49.5 wt or various BHV-1 UL49.5 mutant virus-infected MDBK cells (10 MOI) were harvested at 5 h post infection. The percentage above the bars denotes the decreased peptide-specific FITC (fluorescein isothiocyanate) intensity for each sample as compared with the mock-infected cells, and the statistical significance is indicated by stars: *, P<0.05, **, P<0.01.
FIG. 8B illustrates the results of an analysis of transporter associated with antigen processing (TAP) peptide transport function in various BHV-1 UL49.5 mutant-infected cells. The mock-, BHV-1 UL49.5 wt or various BHV-1 UL49.5 mutant virus-infected MDBK cells (10 MOI) were harvested at 8 h post infection. The percentage above the bars denotes the decreased peptide-specific FITC (fluorescein isothiocyanate) intensity for each sample as compared with the mock-infected cells, and the statistical significance is indicated by stars: *, P<0.05, **, P<0.01.
FIG. 9A illustrates representative fluorescence activated cell sorter (FACS) histograms showing the profile of MHC-I expression in the mock-, BHV-1 wt-, BHV-1 UL49.5 CT-null- and BHV-1 UL49.5Δ30-32 CT-null-infected cell surface. Normal mouse IgG2a served as an isotype-matched control (filled curve). Infected MDBK cells or UL49.5-expressing MDBK-UL49.5+ cells were stained with anti-MHC-I Ab, subsequently incubated with FITC-conjugated rat anti-mouse IgG, and subjected to FACS analysis.
FIG. 9B illustrates the means of three independent experiments using fluorescence activated cell sorter (FACS) for MHC-I expression on the MDBK cells or MDBK-UL49.5+ cells infected with BHV-1 wt, or various BHV-1 UL49.5 mutant viruses. Infected MDBK cells or UL49.5 expressing MDBK-UL49.5+ cells were stained with anti-MHC-I Ab, subsequently incubated with FITC-conjugated rat anti-mouse IgG, and subjected to FACS analysis. The statistical significance is indicated by stars: *, P<0.05, **, P<0.01.
FIG. 10 illustrates the results of an immunoprecipitation/immunoblotting analysis of cellular TAP1. Mock- or various virus-infected cell lysates were immunoprecipitated with goat anti-bovine TAP1-specific antibody followed by immunoblotting with diluted (1:200) rabbit anti-TAP1 polyclonal serum, and then developed by enhanced chemiluminescent substrate.
FIG. 11A illustrates the results of an analysis of nasal virus shedding in calves either sham-infected, infected with BHV-1 wt, or infected with BHV-1 UL49.5Δ30-32 CT-null viruses at the indicated intervals (either days post infection (dpi) or days post challenge (dpc)) following primary infection/immunization and following BHV-1 wt nasal challenge.
FIG. 11B illustrates the results of an analysis of ocular virus shedding in calves either sham-infected, infected with BHV-1 wt, or infected with BHV-1 UL49.5Δ30-32 CT-null viruses at the indicated intervals (either days post infection (dpi) or days post challenge (dpc)) following primary infection/immunization and following BHV-1 wt nasal challenge.
FIG. 12A illustrates the mean rectal temperature for BHV-1 wt-(♦), BHV-1 UL49.5Δ30-32 CT-null mutant-(Δ) or sham-infected (o) calves. The data is presented as mean of two calves (mock) or three calves (virus-infected groups) and standard deviations between the animals at each time point.
FIG. 12B illustrates the median clinical score for BHV-1 wt-(♦), BHV-1 UL49.5Δ30-32 CT-null mutant-(Δ) or sham-infected (o) calves. The data is presented as mean of two calves (mock) or three calves (virus-infected groups) and standard deviations between the animals at each time point.
FIG. 13A illustrates an analysis of BHV-1 virus-specific neutralizing antibody (VN) response in the mock-infected and both virus-infected calves following primary infection (immunization) and after BHV-1 wt intranasal challenge. The VN antibody titers were determined in sera collected at the indicated intervals; the titers were expressed as the reciprocal of the highest dilution that caused a 50% reduction in the number of plaques relative to the virus control (100 PFUs). * and ** denote P value <0.05 and <0.01, respectively for the average VN titers in the BHV-1 UL49.5Δ30-32 CT-null mutant group when compared with the sham-infected group. x and xx denote P<0.05 and <0.01, respectively, when results from the UL49.5 mutant group were compared to those for the BHV-1 wt infected group.
FIG. 13B illustrates an analysis of BHV-1 IFN-γ-producing T cell response in the mock-infected and both virus-infected calves following primary infection (immunization) and after BHV-1 wt intranasal challenge. The measurement of numbers of IFN-γ-producing T cells in the BHV-1 Ag-stimulated PBMCs were determined by ELISPOT. * and ** denote P value <0.05 and <0.01, respectively for the mean number of IFN-γ secreting cells in the BHV-1 UL49.5Δ30-32 CT-null mutant group when compared with the sham-infected group. x and xx denote P<0.05 and <0.01, respectively, when results from the UL49.5 mutant group were compared to those for the BHV-1 wt infected group.
FIG. 14A illustrates the results of FACS analysis of CD8+ T cell proliferation in the mock-infected, BHV-1 wt- and BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves following infection (immunization) and after BHV-1 wt challenge. * and ** denote P value <0.05 and <0.01, respectively for the percentages of individual parameters in the UL49.5 mutant group when compared with the sham-infected group. x and xx denote P<0.05 and <0.01, respectively, when results from the UL49.5 mutant group were compared to those for the BHV-1 wt infected group.
FIG. 14B illustrates the results of an analysis of cytotoxicity of CD8+ T cells in the mock-infected, BHV-1 wt- and BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves following infection (immunization) and after BHV-1 wt challenge. * and ** denote P value <0.05 and <0.01, respectively for the percentages of individual parameters in the UL49.5 mutant group when compared with the sham-infected group. x and xx denote P<0.05 and <0.01, respectively, when results from the UL49.5 mutant group were compared to those for the BHV-1 wt infected group.
FIG. 15A is a schematic illustration of the BHV-1 genome showing the locations of the BHV-1 gN (UL49.5), gE, Us9, and bICP22 genes, with the orientations of gE, Us9, and bICP22 gene transcriptions indicated by arrows.
FIG. 15B is a schematic illustration of the BHV-1 wt UL49.5 residues, highlighting the luminal domain residues of BHV-1 wt (SEQ ID NO:35) and of BHV-1 UL49.5Δ30-32 CT-null (SEQ ID NO:36).
FIG. 15C is a schematic illustration of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viral genome.
FIG. 16A is a schematic illustration showing the strategy for the pBHV-1 gE CTΔ/Us9Δ deletion vector construction, showing the location of the primers listed in FIG. 16B and in Table 2.
FIG. 16B is a list of primers (P1, SEQ ID NO:19; P2, SEQ ID NO:20; P3, SEQ ID NO:21; and P4, SEQ ID NO:22) used to generate pBHV-1 gE CTΔ/Us9Δ. Poly A and Stop sequences designed in P2 are complementary. The nucleotide numbers, 1329-1353, refer to SEQ ID NO:42 shown in FIG. 18.
FIG. 17A shows the results of a PCR amplification of partial BHV-1 gE ORF, containing the gE ectodomain and transmembrane domains shown as nucleotides 1-1353 bp in FIG. 18, SEQ ID NO:42.
FIG. 17B shows the results of a PCR amplification of BHV-1 Us9 downstream 1.1 kb fragment containing partial bICP22 and Us9/bICP22 intergenic sequence.
FIG. 18 shows the nucleotide sequence spanning the gE, Us9, and part of bICP22 genes of BHV-1 wt genome (SEQ ID NO:42; GenBank accession #AJ004801). The Start and Stop codons for gE and Us9 are marked. The gE CT residue 451 alanine which is retained in the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viral genome is also marked.
FIG. 19 illustrates the strategy used to design the PCR primers for sequencing and verifying the pBHV-1 gE CTΔ deletion vector, showing the location of the PUC/M13 forward (SEQ ID NO:23) and reverse (SEQ ID NO:24) primer pair, and the P2 (SEQ ID NO:20), P3 (SEQ ID NO:21) and P5 (SEQ ID NO:26) primers. The sequences for the primers are given in Table 2, except for primer P5 which is given in Table 3.
FIG. 20 shows the nucleotide sequence (SEQ ID NO:43) spanning the gE ectodomain-bICP22 junction area sequences of plasmid clone pBHV-1 gE CTΔ/Us9Δ DNA. The gE aa451 (alanine) encoded by GCA is marked by the arrow. In addition, the triple stop codons, poly A sequence, and KpnI sites immediately left (downstream of bICP22 based on the gene orientation shown in FIG. 15A) of the bICP22 are shown. The references to nucleotide sequence numbers are as shown in SEQ ID NO:42, FIG. 18.
FIG. 21 is a schematic illustration showing the strategy for the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ recombinant virus plaque purification, PCR identification, and sequence analysis.
FIG. 22 is a schematic illustration showing the strategy for PCR amplification and/or sequencing for verification of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ recombinant virus harboring intended gE CT and Us9 ORF deletions. The locations of the various primers, P5-P12, are shown; and the sequences for these primers are given in Table 3.
FIG. 23A illustrates the results of PCR identification of the plaque-purified putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus, and shows the PCR amplification of about 400 bp BHV-1 gE CT fragment using the gE CT-specific primer pair, P7 and P8, shown in Table 3 and FIG. 22.
FIG. 23B illustrates the results of PCR identification of the plaque-purified putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus, and shows the PCR amplification of about 550 bp BHV-1 Us9 fragment using the Us9 ORF-specific primer pair, P11 and P12, shown in Table 3 and FIG. 22.
FIG. 23C illustrates the results of PCR identification of the plaque-purified putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus, and shows the PCR amplification of about 1350 bp BHV-1 gE ectodomain fragment using the gE ectodomain-specific primer pair, P5 and P6, shown in Table 3 and FIG. 22.
FIG. 24 illustrates the results of an immunoblotting analysis of UL49.5Δ30-32 CT-null expression in the mutant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus-infected MDBK cells. Uninfected (mock)-, BHV-1 wt-, BHV-1 gE Am453- (32), BHV-1 Us9Δ- (34), and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant viruses (#7 and #8) infected cell lysates were separated by a 5-20% linear gradient SDS-PAGE and incubated with rabbit anti-BHV-1 UL49.5 polyclonal Ab.
FIG. 25 illustrates the results of an immunoblotting analysis of BHV-1 UL49.5 A30-32 CT-null/gE CTΔ/Us9Δ showing the mutant gE (CTΔ) incorporation in the virion envelope. Partially purified virions of BHV-1 wt, BHV-1 gE Am453, BHV-1 Us9Δ, and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CT Δ/Us9 Δ mutant viruses (#7 and #8) were separated by a 10% SDS-PAGE and incubated with rabbit anti-BHV-1 gE peptide-specific polyclonal antibody.
FIG. 26 illustrates the results of an immunoblotting analysis of BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ showing the mutant gE (CTΔ) incorporation in the virion envelope. Partially purified virions of BHV-1 wt, BHV-1 gE Am453, BHV-1 Us9Δ, and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant viruses (#7 and #8) were separated by a 10% SDS-PAGE and incubated with rabbit anti-BHV-1 gE CT-specific antibody.
FIG. 27 illustrates the results of an immunoblotting analysis showing the deletion of Us9 in the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus. Uninfected (mock)-, BHV-1 wt-, BHV-1 gE Am453-, BHV-1 Us9Δ-, and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant viruses (#7 and #8) infected cell lysates were separated by a 10% SDS-PAGE and incubated with rabbit anti-BHV-1 Us9-specific polyclonal serum.
FIG. 28 illustrates the results of an immunoblotting analysis of BHV-1 gC in the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus-infected MDBK cells. Uninfected (mock)-, BHV-1 wt-, and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant viruses (#7 and #8) infected cell lysates were separated by a 10% SDS-PAGE and incubated with mouse anti-BHV-1 gC-specific McAb.
FIG. 29A is a schematic drawing of the genome organization of BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus, showing the location of the PCR and/or sequencing primers for verification of the stability of the deleted sequences after five serial passages in MDBK cells.
FIG. 29B shows the results of PCR amplification of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus DNA at passage 0 (P0), three serial passages (P3), and five serial passages (P5) using the UL49.5-specific primer pair of UL49.5-1/UL49.5-2 as shown in Table 3 and FIG. 29A.
FIG. 29C shows the results of PCR amplification of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus DNA at passage 0 (P0), three serial passages (P3), and five serial passages (P5) using the gE-ICP22 primer pair of P9/P10 as shown in Table 3 and FIG. 29A.
FIG. 30 illustrates the results of an analysis of nasal virus shedding in rabbits either infected with BHV-1 wt virus or infected with BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus at the indicated intervals (days post infection (dpi)). The data represent an average of five rabbits in each treatment group.



MODES FOR CARRYING OUT INVENTION
We have developed a recombinant BHV-1 vaccine virus that incorporates into a single virus two or more deletions in one or more of three genes—UL49.5 (gN), gE and Us9. Specifically, we made and tested a BHV-1 UL49.5Δ30-32 CT-null virus, and then used this virus to incorporate additional changes, e.g., the gE cytoplasmic-tail deletion, Us9 deletion, or both. This triple mutant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus was shown to be stable, and will be a superior vaccine to the current BHV-1 mutants. The advantages of this new mutant used as a BHV-1 vaccine are the following: (1) the mutant virus will not be shed following reactivation; (2) the mutant virus is serologically distinguishable from wt BHV-1 (a DIVA based on gE CT-specific serum antibodies); and (3) the mutant virus will induce a better and faster protective response by inducing higher SN titers and better cellular immune responses. The new mutant viruses can also be used as vectors for exogenous gene expression.
We constructed BHV-1 UL49.5 luminal domain mutants in the wt UL49.5 or UL49.5 CT-null backgrounds and determined their TAP inhibition, TAP degradation and MHC-I down-regulation properties in virus-infected MDBK cells relative to mock- and BHV-1 wt-infected MDBK cells. Further, we determined the effects of UL49.5 mutations that abolished the UL49.5-mediated TAP inhibition/MHC-I down-regulation functions (BHV-1 UL49.5Δ30-32 CT-null) on virus replication and UL49.5 (gN)/gM interaction. We found that: (1) Relative to wt-infected cells, cells-infected with UL49.5 mutants having residues 30-32 deleted or substituted with alanine have significantly increased TAP mediated peptide transport and MHC-I surface expression. However, when BHV-1 UL49.5Δ30-32 mutation is combined with deletion of the UL49.5 CT residues, there was a significant increase in peptide transport and MHC-I surface expression. (2) Either deletion of UL49.5 residues 30-32 or of UL49.5 CT-null mutation individually prevented UL49.5-mediated bovine TAP1 degradation. (3) BHV-1 UL49.5Δ30-32 mutant virus replicated with wild-type efficiency in MDBK cells. (4) Mutant UL49.5Δ30-32/gM interaction and gM processing in mutant virus-infected cells were not affected.
Embodiments for this invention include, but are not limited to, the following: (1) a mutant BHV-1 virus comprising at least two mutations in UL49.5; (2) a mutant BHV-1 virus in which the two mutations in glycoprotein N are found in the cytoplasmic tail and in the luminal residues 30RRE32; and (3) a BHV-1 virus comprising two mutations in glycoprotein N and further comprising one or more mutations in glycoprotein E or in envelope protein Us9.
Other embodiments include, but are not limited to, the following: (1) a mutant BHV-1 virus comprising at least two mutations in glycoprotein N and further comprising one or more mutations in glycoprotein E in which at least one mutation is in the cytoplasmic tail of gE, e.g., gE CT-null; and (2) a mutant BHV-1 virus comprising at least two mutations in glycoprotein N and further comprising one or more mutations in the envelope protein Us9 in which at least one mutation is chosen from deletion of the entire Us9 gene or of the acidic portion, residues 83-90.
Other embodiments include, but are not limited to, the following: (1) a mutant BHV-1 virus comprising at least two mutations in UL49.5 in which the two mutations are found in the cytoplasmic tail and in the luminal residues 30 to 32 and further comprising one or more mutations in glycoprotein E or in envelope protein Us9; (2) a mutant BHV-1 virus comprising at least two mutations in UL49.5 in which the two mutations are found in the cytoplasmic tail and in the luminal residues 30RRE32 and further comprising the mutations of gE CT-null and Us9-deletion; and (3) a mutant BHV-1 virus comprising at least two mutations in UL49.5 in which the two mutations are found in the cytoplasmic tail and in the luminal residues 30 to 32 and further comprising the mutations of gE CT-null and Us9-acidic portion, residues 83-90.
Other embodiments include, but are not limited to, the following: (1) a live vaccine based on any of the above embodiments of the attenuated mutant BHV-1 virus; (2) a vaccine based on the any of the above embodiments of the attenuated mutant BHV-1 virus that does not shed following reactivation, is a DIVA, and induces a protective response at a level higher than achieved by a vaccine based on a virus that does not have one or more mutations in UL49.5; and (3) a vaccine composition comprising one or more of the vaccines based on any of the above embodiments of the attenuated mutant BHV-1 viruses and that further comprising a pharmaceutically acceptable vehicle or an adjuvant.
In another embodiment, any of the above embodiments of the attenuated, mutant BHV-1 viruses can be used as a vector which contains one or more heterologous genes introduced by recombinant DNA techniques. Examples of such heterologous genes include, without limitation, genes that code for an immunogenic peptide, e.g., cytokines, or genes that code for protective antigens of another pathogen, e.g., bovine viral diarrhea virus, bovine respiratory syncytial virus, bovine respiratory corona virus, parainfluenza virus, Mannheimia haemolytica (bacterial pathogen), etc. (See, U.S. Pat. No. 6,086,902). Such heterologous genes can be controlled by an exogenous gene that is a known promoter gene.
Example 1
BHV-1 UL49.5Δ30-32 CT-Null Production and Effect on MHC-1: Materials and Methods
Cells and Virus Strain.
The Madin-Darby bovine kidney (MDBK) cell line obtained from the American Type Culture Collection (Manassas, Va.) was maintained in Dulbecco's modified Eagle's medium (DMEM) supplemented with 5-10% heat-inactivated fetal bovine serum (FBS) (HyClone Laboratories, Inc., South Logan, Utah). The BHV-1 Cooper (Colorado-1) strain, obtained from the American Type Culture Collection (Cat # CRL-1390; Manassas, Va.), was propagated and titrated in MDBK cells as previously published [25].
Plasmids and Bacterial Strains.
Vector pGEX-4T-2 (GE Healthcare, Piscataway, N.J.) and E. coli strain BL21 (GE Healthcare) were used to express BHV-1 UL49.5-GST or bovine TAP1-GST fusion proteins. E. coli strain DH10B (Invitrogen, Carlsbad, Calif.) was used to maintain all the infectious BHV-1 BAC clones. E. coli strain SW105 (kindly provided by Dr. N. G. Copeland, Frederick, Md.) was used for Red recombination.
Antibodies.
Chicken anti-Calreticulin (ER) polyclonal Ab (ab14234, Abcam, Cambridge, Mass.), biotinylated donkey anti-rabbit IgG (ab6801, Abcam), HRP-conjugated donkey anti-rabbit IgG (Cat. 31458, Thermo Labsystems, Franklin, Mass.), phycoerytrin (PE)-conjugated donkey anti-goat antibody (F0107, R&D Systems, Minneapolis, Minn.), TRITC-conjugated donkey anti-chicken Ab (43R-ID057RD, Fitzgerald Industries, Acton, Mass.), Alexa flour 488-conjugated donkey anti-goat Ab (Molecular Probes, Invitrogen, Carlsbad, Calif.), Alexa flour 594-conjugated donkey anti-rabbit Ab (Molecular Probes), mouse anti-MHC I Ab (H58A, VMRD, Inc., Pullman, Wash.), and FITC-conjugated rat anti-mouse IgG (eBioscience, San Diego, Calif.) were purchased from the respective commercial sources.
Production of Anti-BHV-1 UL49.5-, gM- and Anti-Bovine TAP1-Specific Polyclonal Sera: (i) Anti-BHV-1 μM-Specific Antibody.
A peptide corresponding to the predicted amino acid residues 191-205 ([H]-QAVHALRERSPRAHRC-OH; SEQ ID NO:1) of BHV-1 μM was synthesized and conjugated to polyethylene glycol as published [26,27] and used to immunize New Zealand white rabbits (Cocalico Biologicals, Reamstown, Pa.) to generate anti-BHV-1 μM serum.
Production of Anti-BHV-1 UL49.5-, gM- and Anti-Bovine TAP1-Specific Polyclonal Sera: (ii) Anti-BHV-1 UL49.5-Specific Antibody.
The DNA fragment corresponding to UL49.5 amino acid residues 23 to 60 (Genbank Accession No. AJ004801) was cloned into pGEX-4T-2 vector and expressed in E. coli BL21 as a GST fusion protein. The UL49.5-specific peptide was purified using a glutathione-sepharose column followed by thrombin protease cleavage and used to immunize rabbits (Cocalico Biologicals) as published [27].
Production of Anti-BHV-1 UL49.5-, gM- and Anti-Bovine TAP1-Specific Polyclonal Sera: (iii) Anti-Bovine TAP1-Specific Antibody.
The predicted amino acid residues 117 to 167 and residues 351 to 415 (Accession No. AAY34698) of bovine TAP1 were amplified by PCR, cloned into Vector pGEX-4T-2, expressed as GST fusion proteins, and purified to immunize rabbits and goats as described above.
Cell Transfection and Generation of UL49.5 Expressing Cell Line.
To generate a UL49.5 expressing cell line, first the entire BHV-1 UL49.5 ORF coding region (UL49.5 gene) was amplified from the wild type BHV-1 Cooper strain genomic DNA by PCR and cloned into the eukaryotic expression vector, pEF6/V5-His TOPO (Invitrogen). Positive clones containing UL49.5-specific sequences were identified by PCR and sequencing of the UL49.5 ORF coding region. One positive UL49.5-pEF6/V5-His clone DNA was transfected into MDBK cells by Lipofectamine (Invitrogen) as published [27]. Forty-eight hours after transfection, confluent cells were treated with trypsin and diluted 5-fold in DMEM containing 10 μg/ml of Blastcidin (Invitrogen) and plated in 25 cm2 flasks. The Blastcidin concentration was decreased to 5 μg/ml after 7 days, and thereafter the medium was replaced every 3 days until the distinct Blasticidin-resistant colonies developed. Blastcidin-resistant clones were then isolated and analyzed for UL49.5 expression by indirect immunofluorescence (IF) and immunoprecipitation assays.
Radiolabelling of Mock- or Virus-Infected MDBK Cell Proteins, SDS-PAGE and Immunoprecipitation/Immunoblotting Analysis.
[35S] methionine-cysteine labeling of the mock- or virus-infected MDBK cells was performed as published earlier [28, 29]. Cell lysates and immunoprecipitates were denatured at 100° C. in reducing sample buffer containing β-mercapthoethanol for the UL49.5 samples, and separated in a 5 ̃20% linear gradient sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE) [23]. However, for gM and TAP1 analyses, cell lysates and immunoprecipitates were incubated at 56° C. in reducing sample buffer with 100 mM dithiothreitol (DTT) and then loaded on a 5 ̃20% linear gradient or 10% SDS-PAGE respectively [22, 23, 28].
Construction of BHV-1 UL49.5 Cytoplasmic Tail Null Virus (BHV-1 UL49.5 CT-Null BAC).
A two-step Red-mediated mutagenesis protocol was followed as published earlier [30] to construct a UL49.5 cytoplasmic tail null virus. Briefly, primers for UL49.5 CT-null-forward (for) and UL49.5 CT-null-reverse (rev) (SEQ ID NO:2 and SEQ ID NO:3, respectively) were designed to delete 7 nucleotides of UL49.5 ORF (238 to 244, AGGCTCA) and to mutate the nucleotides 246-247 (GG) to AA (FIGS. 2 and 3, Table 1). The PCR amplified I-SceI/aphAI cassette was digested with Dpn I, purified and electroporated together with pBAD-I-SceI DNA into SW105 competent cells harboring pBHV-1 WT BAC for 1st recombination as published earlier [30-32]. Several kanamycin-sensitive colonies were obtained after the 2nd recombination. Finally, positive pBHV-1 BAC UL49.5 CT-null colonies were identified by PCR and sequencing of the UL49.5 ORF in the putative mutant colonies. The BAC-excised BHV-1 UL49.5 CT-null virus was generated from a pBHV-1 BAC UL49.5 CT-null clone by Cre-mediated BAC excision as described earlier [30-32].







TABLE 1







PCR primers used for generation of BHV-1 UL49.5 mutants and for colony identification








Primer
Sequence (5′ to 3′)





Mutagenesisa



CT-null For
5′-AATGGTCGCCGTGGCCCTGTACGCGTACGGGCTTTGCTTTTAAGCGCCAGCGGGCCCAATaggatgacgacgataa


(SEQ ID NO: 2)
gtaggg-3′


 


CT-null Rev
5′-CGCCCCCGCGACTCCTTTTTATTGGGCCCGCTGGCGCTTAAAAGCAAAGCCCGTACGCGTcaaccaattaaccaattctga


(SEQ ID NO: 3)
ttag-3′


 


Δ30-32 For
5′-TGCCATCGTGCGCGGCCGCGACCCCCTGCTAGACGCGATGGGGGCAATGGACTTTTGGAGaggatgacgacgataa


(SEQ ID NO: 4)
gtaggg-3′


 


Δ30-32 Rev
5′-CGCGCGCGTAGCAGCCTGCGCTCCAAAAGTCCATTGCCCCCATCGCGTCTAGCAGGGGGTcaaccaattaaccaattc


(SEQ ID NO: 5)
tgattag-3′


 


Δ37-40 For
5′-ACCCCCTGCTAGACGCGATGCGGCGCGAGGGGGCAATGGACGGCTGCTACGCGCGCGGGGTaggatgacgacgataagtag


(SEQ ID NO: 6)
gg-3′


 


Δ37-40 Rev
5′-GCGGTGGCTCCGAGAGCGGCACCCCGCGCGCGTAGCAGCCGTCCATTGCCCCCTCGCGCCcaaccaattaaccaattctga


(SEQ ID NO: 7)
ttag-3′


 


Δ43-46 For
5′-ATGCGGCGCGAGGGGGCAATGGACTTTTGGAGCGCAGGCTGCGTGCCGCTCTCGGAGCCACCaggatgacgacgataagta


(SEQ ID NO: 8)
ggg-3′


 


Δ43-46 Rev
5′-TAAAAAACAACCAGGGCCTGCGGTGGCTCCGAGAGCGGCACGCAGCCTGCGCTCCAAAAGTcaaccaattaaccaattctg


(SEQ ID NO: 9)
attag-3′


 


30aaa32 For
5′-TGCCATCGTGCGCGGCCGCGACCCCCTGCTAGACGCGATGgcggccgcgGGGGCAATGGACTTTTGGAGaggatgacg


(SEQ ID NO: 10)
acgataagtaggg-3′


 


30aaa32 Rev
5′-CGCGCGCGTAGCAGCCTGCGCTCCAAAAGTCCATTGCCCCcgcggccgcCATCGCGTCTAGCAGGGGGTcaaccaat


(SEQ ID NO: 11)
taaccaattctgattag-3′


 


Colony PCRb










UL49.5 For
agagcgccagcgagtcgggctc
d30-32 SRev agtccattgccccCTCGCGCCG



(SEQ ID NO: 12)
(SEQ ID NO: 13)


 


d37-40 SRev
gcgcgcgtagcagccTGCGCT
d43-46 SRev ctccgagagcggcacCCCGC



(SEQ ID NO: 14)
(SEQ ID NO: 15)





aBHV-1 UL49.5-specific sequences are shown in uppercase letter; the italicized and italicized-underlined sequences are complementary to each other in inverse orientation. Nucleotides in lowercase indicated the pEPkan-S-specific sequences.


bPrimers used for identification of BHV-1 UL49.5 BAC mutants form the selected kanamycin-sensitive colonies by PCR. The bold letters indicate the reverse complement sequences corresponding to the deleted UL49.5 nucleotides respectively.






BAC Mutagenesis to Incorporate Short Deletions or Alanine Substitutions Within UL49.5 Luminal Domain.
As shown in Table 1, primer pairs specific for short sequence deletion at UL49.5 amino acid residues 30 to 32 (UL49.5Δ30-32), 37 to 40 (UL49.5Δ37-40), and 43 to 46 (UL49.5Δ43-46) or alanine substitutions at residues 30 to 32 (UL49.5 30AAA32) were synthesized. The PCR products were amplified, purified, and electroporated into the SW105 competent cells harboring pBHV-1 BAC (wt) or pBHV-1 BAC UL49.5 CT-null for 1st recombination, and 2nd recombination was performed as described above. Reconstituted BAC containing or BAC-excised mutant viruses were then generated as published earlier [30-32]. BAC-excised UL49.5 mutant viruses were plaque purified and designated as BHV-1 UL49.5Δ30-32, BHV-1 UL49.5 30AAA32, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, and BHV-1 UL49.5Δ43-46 CT-null, respectively.
Viral Growth Kinetics and Plaque Size Determination.
One step growth curve assays were performed as published earlier [25, 33]. Average plaque size was calculated by measuring 50 randomly selected plaques for each mutant virus (under a microscope with a graduated ocular objective).
TAP1 and UL49.5 Intracellular Staining and Laser Scanning Confocal Microscopy.
MDBK cells grown on permanox chamber slides (Cole-Parmer, Vernon Hills, Ill.) were infected with wt BHV-1 or BHV-1 UL49.5 mutant viruses. Cells were fixed at different times post-infection with freshly prepared 1% paraformaldehyde in PBS, permeabilized with FACS permeabilizing solution, and blocked with 2% IgG free bovine serum albumin. The cells were incubated (for 60 min) with a cocktail of goat anti-bovine TAP1 (1:800), rabbit anti-UL49.5 (1:3200) and chicken anti-Calreticulin (ER) (1:3200) antibodies, washed, and subsequently stained (for 15 min) with a cocktail of Alexa flour 488-conjugated donkey anti-goat (1:2000), TRITC-conjugated donkey anti-chicken (1:2000), and Alexa flour 594-conjugated donkey anti-rabbit (1:2000) antibodies. After 5 washes, coverslips were mounted onto slides and examined with a Zeiss LSM510 laser scanning confocal microscopy using 20× and 40× objectives. Cellular ER-, bovine TAP1- and UL49.5-specific labeling was excited at laser wavelengths of 410 nm, 517 nm, and 617 nm, respectively.
Analysis of Peptide Transport in the BHV-1 UL49.5 Mutants-Infected Cells.
MDBK cells grown on 6-well plate were infected at a MOI of 10 with BHV-1 wt, BHV-1 UL49.5 CT-null and various UL49.5 luminal domain mutant viruses. At different time-points (2, 5, and 8 hours post infection (hpi)), the cells were trypsinized, permeabilized, and incubated with 5 μl of Phycoerythrin-conjugated mouse anti-calreticulin (anti-ER) MAb (Clone FMC 75, Abcam) and the FITC-conjugated synthetic peptide, SVNKTERAY, in the absence and presence of ATP (10 mM, Sigma) for 20 min at 37° C. in the dark. The cells were fixed after three washes and analyzed for fluorescence intensity by a FACS Calibur flow cytometer. At least 30,000 gated events based on forward and side scatters and pulse width were analyzed using Summit Data Acquisition and Analysis software (DakoCytomation, Glostrup, Denmark). The mock infected MDBK cells served as a control.
Detection of MHC-I Expression on the Infected Cell Surface by FACS.
Approx. 106 of MDBK cells either mock infected or infected (1 MOI) with BHV-1 wt, BHV-1 UL49.5 CT-null, or individual BHV-1 mutant virus were collected at 12 or 18 hpi, blocked with IgG free BSA, and incubated (for 20 min) with mouse anti-bovine MHC I antibody (Ab). After PBS washes, cells were incubated with 5 μl of FITC-conjugated rat anti-mouse Ab and fixed with 2% formalin and then analyzed by flow cytometer. The stained cells were gated based on forward and side scatters and pulse width. At least 30,000 gated events were analyzed using Summit Data Acquisition and Analysis Software (DakoCytomation) as previously published [35]. MDBK cells infected similarly with the respective viruses were stained by FITC-conjugated mouse IgG2a and used as the isotype controls.
Example 2
BHV-1 UL49.5Δ30-32 CT-Null Construction and Characterization
A BHV-1 UL49.5 CT-null mutant virus was constructed by deletion of 7 nucleotides (238-AGGCTCA-244) and mutation of nucleotides 246G and 247G to AA to introduce a strong stop codon, TAA (See FIGS. 1A, 2 and 3). FIG. 1A gives the predicted amino acid (aa) sequence of BHV-1 UL49.5 open reading frame (ORF), with the bold letters indicating the UL49.5 cytoplasmic tail residues and the underlined region indicating the UL49.5 luminal domain residues. In the UL49.5Δ30-32 CT-null mutant, the UL49.5 residues 30RRE32 of the luminal domain were deleted, along with the UL49.5 cytoplasmic tail residues 80RL81. In addition, UL49.5 residues 82M through 96G are not expressed due to an amber mutation replacing the 82M to a stop codon. FIG. 2 shows the DNA sequence of wild type BHV-1 UL49.5 and the changes to generate the mutant BHV-1 UL49.5 CT-null, i.e., the deletion of nucleotides 238 to 244 and the mutation of nucleotides 246 and 247 to AA to introduce a strong stop codon TAA. The primers used in making the mutant viruses are shown in Table 1, and schematics of the PCR primers used to make BHV-1 UL49.5 CT-null and BHV-1 UL49.5Δ30-32 CT-null are shown in FIGS. 3 and 4, respectively.
Based on an alignment of predicted amino acid sequences of UL49.5 luminal domains of several animal alpha herpesviruses; BHV-1, pseudorabiesvirus (PRV, Accession No. U38547.1), equine herpesvirus 1 type (EHV-1, Accession No. AY665713.1), equine herpesvirus type 4 (EHV-4, Accession No. NC—001844), and canine herpesvirus (CHV, Patent EPO 910406), a BHV-1 luminal domain motif UL49.5 30-RXEXXXXFW-XXXCXXXG-46 was found to be conserved within the corresponding UL49.5 luminal domains of several alpha herpesviruses (Data not shown). To determine whether any of these conserved sequences are functionally important for TAP inhibition, several BHV-1 UL49.5 luminal domain mutants in wild-type (wt) and UL49.5 CT-null backbone were designed and constructed (FIG. 1C). To determine the role of residues 30-32 alone in TAP inhibition and TAP degradation, both UL49.5Δ30-32 and alanine exchanged (UL49.5 30AAA32) mutants, later, were constructed in the BHV-1 wt backbone (FIG. 1D).
BAC excised BHV-1 UL49.5 mutant viruses were analyzed by immunoprecipitation and/or immunoblotting to determine molecular mass and level of mutant UL49.5 expression, incorporation of the mutant UL49.5 in the envelope, and effect of UL49.5 mutation on gM processing or UL49.5/gM interaction. FIG. 5 shows the results of the immunoblotting analysis of mutant UL49.5 expressed in the infected cells and incorporated in the virion envelope by various UL49.5 mutant viruses, including uninfected (Mock), BHV-1 wt, BHV-1 UL49.5 CT-null, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ30-32, and BHV-1 UL49.5 30AAA32. The virus infected cell lysates or partially purified virions were separated by a 10-20% gradient SDS-PAGE and incubated with rabbit anti-BHV-1 α-UL49.5 specific Ab. Equal amounts of the extracted cell lysates or virions were loaded, and the α-tublin was used as a control.
As shown in FIG. 5, relative to wt UL49.5 (with an approximate molecular mass of 10 kDa), the approximate molecular mass of the CT-null UL49.5 is 8 kDa, which is consistent with the predicted molecular mass of UL49.5 lacking the C-terminal 17 aa residues. For the BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, and BHV-1 UL49.5 30AAA32 CT-null viruses, all have a UL49.5 with molecular mass of approximately 8 kDa which is similar to the parental virus BHV-1 UL49.5 CT-null. However, the BHV-1 UL49.5Δ30-32 and UL49.5 30AAA32 (both on a wt backbone) have an approximate molecular mass of 10 kDa similar to wt UL49.5 (FIG. 5). Importantly, all mutant UL49.5 proteins were incorporated into their respective virion envelopes (FIG. 5).
FIG. 6 illustrates the gM-UL49.5 interaction by radioimmunoprecipitation assay (RIPA). 35S labeled lysates from the mock-infected or virus-infected MDBK cells (uninfected (Mock), BHV-1 wt, BHV-1 UL49.5 CT-null, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ30-32, and BHV-1 UL49.5 30AAA32) were immunoprecipitated with rabbit anti UL49.5- (top two panels) or anti gM-specific polyclonal serum (bottom two panels) and separated by SDS-PAGE and visualized by autoradiography.
As shown in FIG. 6, these results of immunoprecipitation using UL49.5- or gM-specific rabbit polyclonal antibodies show that: (i) amounts of wt and mutant UL49.5 (UL49.5 CT-null, UL49.5Δ30-32 CT-null, UL49.5Δ43-46 CT-null, and UL49.5Δ37-40 CT-null) immunoprecipitated by anti UL49.5 antibody in each case were very similar (FIG. 6), (ii) the amount and molecular mass of mature gM coimmunoprecipitated by the anti-UL49.5 antibody from infected cell lysates of BHV-1 wt, BHV-1 UL49.5 CT-null, BHV-1 UL49.5Δ30-32 CT-null, and BHV-1 UL49.5Δ43-46 CT-null viruses were very similar; but in the case of BHV-1 UL49.5Δ37-40 CT-null, the amount of processed (mature) gM coimmunoprecipitated was reduced (FIG. 6); and (iii) consistent with the latter results, with the exception of BHV-1 UL49.5Δ37-40 CT-null, anti gM antibody coimmunoprecipitated similar amounts of UL49.5 from the all the virus-infected cell lysates. In the case of BHV-1 UL49.5Δ37-40 CT-null, the amount of UL49.5 coimmunoprecipitated was reduced; and additionally, there was an increase in the amount of unprocessed gM (FIG. 6).
Taken together, these results indicated that the mutant viruses have essentially normal UL49.5 expression and all but one mutant (UL49.5Δ37-40 CT-null) have a normal gM processing and UL49.5/gM interaction. The BHV-1 UL49.5Δ37-40 CT-null virus had slightly defective gM processing and UL49.5/gM interaction.
Example 3
Growth Characteristics of Reconstituted UL49.5 Mutant Viruses In Vitro in MDBK Cells
FIG. 7A illustrates the average plaque size measured at 48 h post infection (hpi) of various BHV-1 UL49.5 mutants (BHV-1 wt, BHV-1 UL49.5 CT-null, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5Δ37-40 CT-null, BHV-1 UL49.5Δ43-46 CT-null, BHV-1 UL49.5 30AAA32 CT-null, BHV-1 UL49.5Δ30-32, and BHV-1 UL49.5 30AAA32) in MDBK cells. Average plaque diameters of 50 randomly selected plaques are shown as mean±standard deviation. The average plaque sizes shown in FIG. 7A demonstrated that all BHV-1 UL49.5 mutants had virtually similar plaque sizes when compared with BHV-1 wt.
To examine whether the various deletions within the luminal domain affected viral replication kinetics and virus yield in infected MDBK cells, one-step growth properties of the various UL49.5 mutants were determined. FIG. 7B illustrates the one-step growth kinetics of BHV-1 wt and three representative BHV-1 UL49.5 mutants (UL49.5Δ30-32, UL49.5Δ37-40 and UL49.5Δ43-46) in the CT-null backbone. Each data point represents the average of duplicate samples obtained from separate infections. Note that BHV-1 UL49.5Δ37-40 CT-null exhibited slightly delayed viral replication kinetics between 12 to 42 hpi. The graph of the one step growth kinetics shown in FIG. 7B shows that all BHV-1 UL49.5 mutants had virtually similar growth kinetics when compared with BHV-1 wt.
Example 4
Peptide Transport in BHV-1 UL49.5 Mutant Virus-Infected Cells
Peptide transport was assessed, in the presence (FIGS. 8A and 8B) and absence of ATP (data not shown), in mock-infected MDBK cells and MDBK-UL49.5+ cells or as infected with BHV-1 wt, BHV-1 UL49.5 CT-null and individual BHV-1 UL49.5 mutant viruses. In addition, peptide transport was determined in mock-infected MDBK cells (FIGS. 8A and 8B), mock-infected MDBK-UL49.5+ cells, and BHV-1 UL49.5 mutant virus-infected MDBK-UL49.5+ cells (FIGS. 8A and 8B). FIG. 8B illustrates the results of an analysis of transporter associated with antigen processing (TAP) peptide transport function in various BHV-1 UL49.5 mutant-infected cells at 5 hours past infection (hpi) and 8 hpi, respectively. The percentage above the bars denotes the decreased peptide-specific FITC (fluorescein isothiocyanate) intensity for each sample when compared with the mock-infected cells, and the statistical significance is indicated by stars: *, P<0.05, **, P<0.01. At 5 hpi, the effect of UL49.5 mutations on peptide transport in BHV-1 UL49.5 mutant virus-infected cells, relative to BHV-1 wt-infected cells, was noticeable, but the effects were more prominent at 8 hpi (Comparing FIG. 8A (5 hpi) to FIG. 8B (8 hpi)). Relative to peptide transport in BHV-1 wt-infected MDBK cells at 8 hpi, peptide transport in cells infected with: (i) BHV-1 UL49.5Δ30-32 and BHV-1 UL49.5 30AAA32 was increased 4 fold (23% and 27% inhibition, respectively versus 84% inhibition for the wt; P<0.01); (ii) BHV-1 UL49.5 CT-null was increased 2.5 fold (63% inhibition versus 84% for the wt; P<0.05); and (iii) BHV-1 UL49.5Δ30-32 CT-null or BHV-1 UL49.5 30AAA32 CT-null was increased to about 6 fold (7% and 10% inhibition, respectively versus 84% for the wt; P<0.01) (FIG. 8B). Since there was also an additional 1.2-1.5 fold increase of peptide transport in BHV-1 U149.5Δ30-32 CT-null-/BHV-1 UL49.5 30AAA32 CT-null-infected cells compared with the corresponding BHV-1 UL49.5Δ30-32/BHV-1 UL49.5 30AAA32 cells (7%/10% versus 23%/27% inhibition, respectively)(FIG. 8B), the increase in peptide transport due to the UL49.5 CT sequence deletion alone was significant (P<0.05). As expected, in the absence of ATP, there was no peptide transport in either wt or mutant-viruses infected MDBK cells (data not shown).
Regardless of BHV-1 UL49.5Δ30-32 or BHV-1 UL49.5Δ30-32 CT-null or BHV-1 UL49.5 CT-null virus infection, peptide transport in infected MDBK-UL49.5+ cells was inhibited to almost wt UL49.5 level ( ̃90%) (FIG. 8B). Therefore, the relative increase in peptide transport in MDBK cells infected with BHV-1 UL49.5 mutants with residues 30-32-deleted or substituted with alanine and BHV-1 UL49.5 CT-null virus is due to the lack of UL49.5 residues important for TAP mediated peptide transport function.
Example 5
MHC Class I Cell-Surface Expression in BHV-1 UL49.5 Mutants-Infected Cells
Experiments were conducted to determine if MHC-I cell surface expression was increased in MDBK cells infected with BHV-1 UL49.5 luminal domain mutants. FIG. 9A illustrates representative fluorescence activated cell sorter (FACS) histograms showing the profile of MHC-I expression in the mock-, BHV-1 wt-, BHV-1 UL49.5 CT-null- and BHV-1 UL49.5Δ30-32 CT-null-infected cell surface. Normal mouse IgG2a served as an isotype-matched control (filled curve). Infected MDBK cells or UL49.5-expressing MDBK-UL49.5+ cells were stained with anti-MHC-I Ab, subsequently incubated with FITC-conjugated rat anti-mouse IgG and subjected to FACS analysis. FIG. 9B shows the means of three independent experiments from the data produced by FACS as shown in FIG. 9A. The statistical significance is indicated by stars: *, P<0.05, **, P<0.01.
As shown in FIGS. 9A and 9B, compared with BHV-1 wt-infected MDBK cells, MHC-I surface expression was increased: (i) in BHV-1 UL49.5Δ30-32- and BHV-1 UL49.5 30AAA32-infected MDBK cells by 2 fold (74.3% and 75.0%, respectively versus 36.2% for the wt; P<0.01); (ii) in BHV-1 UL49.5Δ30-32 CT-null- and BHV-1 UL49.5 30AAA32 CT-null-infected MDBK cells by 2.5 fold (88.6% and 89.1%, respectively versus 36.2% for the wt; P<0.01); and (iii) in BHV-1 UL49.5 CT-null-infected cells by 1.3 fold (49.6% versus 36.2% for the wt; P<0.05). Since a similar 1.2-1.3 fold increase in MHC-I surface expression was also obtained in BHV-1 UL9.5Δ30-32 CT-null- and BHV-1 UL49.5 30AAA32 CT-null-compared with BHV-1 UL49.5Δ30-32 and BHV-1 UL49.5 30AAA32-infected cells (88.6%/89% versus 74.3%/75%), the increase in MHC-I expression due to the deletion of UL49.5 CT sequences alone was significant (P<0.05).
In MDBK-UL49.5+ cells, regardless of BHV-1 UL49.5 CT-null or BHV-1 UL49.5Δ30-32 CT-null virus infection, MHC-I cell-surface expression was down-regulated like in wt BHV-1-infected MDBK cells (FIG. 9B). Therefore, the relative increase in MHC-I surface expression observed for the mutant viruses is due to the effect of specific UL49.5 mutation(s) and is consistent with the peptide transport data obtained for respective mutants with wt or UL49.5 CT-null backgrounds. Taken together, even though UL49.5 residues 30-32 are essential for TAP mediated peptide transport and MHC-I down-regulation, UL49.5 CT residues are important to express full potential of UL49.5-mediated TAP inhibition and MHC-I down-regulation function.
Example 6
Status of TAP1 Molecules in the BHV-1 wt Versus BHV-1 UL49.5 CT-Null, BHV-1 UL49.5Δ30-32 and BHV-1 UL49.5 30AAA32 Mutants-Infected Cells
In the BHV-1 UL49.5 CT-null virus-infected cells, TAP1 is not degraded [15]. Experiments were conducted to determine the effect of UL49.5Δ30-32 and UL49.5 30AAA32 mutations alone on the status of TAP1 in the respective mutant virus-infected cells compared with the UL49.5 CT-null and wt UL49.5. Mock- or various virus-infected cell lysates were immunoprecipitated with undiluted goat anti-bovine TAP1 specific antibody followed by immunoblotting with diluted (1:200) rabbit anti-TAP1 polyclonal serum, and then developed by enhanced chemiluminescence. The results are shown in FIG. 10. An approximately 70 kDa TAP1 specific band is detectable in the mock-, BHV-1 UL49.5 CT-null-, BHV-1 UL49.5Δ30-32 CT-null, BHV-1 UL49.5 30AAA32 CT-null-, BHV-1 UL49.5Δ30-32-, and BHV-1 UL49.5 30AAA32-infected cell lysates, but not in the case of BHV-1 wt. Note that in case of BHV-1 wt virus-infected lysate TAP1-specific  ̃70 kDa band is mostly degraded. A 45 kDa (approx.) non-specific protein is also immunoprecipitated and recognized in the immunoblot by the TAP1-specific antibodies in all the samples including the BHV-1 wt. Relative amount of 45 kDa protein immunoprecipitated from each cell lysate sample can be viewed as loading control. Since TAP1 was degraded only in BHV-1 wt infected MDBK cells but not in BHV-1 UL49.5 CT-null-, BHV-1 UL49.5Δ30-32, BHV-1 UL49.5 30AAA32, BHV-1 UL49.5 30AAA32 CT-null-infected MDBK cells (FIG. 10), both UL49.5 residues 30-32 and UL49.5 cytoplasmic tail sequences are important for UL49.5-mediated TAP degradation.
To determine the subcellular localization of the mutant UL49.5 proteins relative to wt UL49.5 protein in the virus-infected cells and to determine the status of TAP1 degradation and co-localization of TAP1 with respect to the mutant UL49.5, confocal microscopy was used. The results showed that at 12 hpi, TAP1 was not detectable in wt-infected cells, but TAP1 was detectable in the ER of UL49.5 CT-null-, UL49.5Δ30-32 CT-null-, UL49.5Δ37-40 CT-null- and UL49.5Δ43-46 CT-null-infected cells (data not shown). However, at 6 hpi minor amounts of TAP1 which colocalized with UL49.5 were detectable in the ER of BHV-1 wt-infected MDBK cells (data not shown).
Considering the TAP1 degradation, peptide transport, MHC-I down-regulation, and UL49.5-TAP1 co-localization data, TAP1 and UL49.5 residues 30-32 interaction in the ER is sufficient to inhibit TAP-mediated peptide transport function. However, both UL49.5 residues 30-32 and the UL49.5 CT residues are required for maximum UL49.5 inhibition of TAP function.
As shown in Examples 1-6, we have constructed several UL49.5 luminal domain mutants in which either residues 30-32 (RRE) or 37-40 (FWSA; SEQ ID NO:17) or 43-46 (YARG; SEQ ID NO:18) were deleted in the background of a UL49.5 CT-null virus. We then analyzed their TAP inhibition/MHC-I down-regulation properties in comparison to wt UL49.5 and UL49.5 CT-null. The results indicated that, while increases in TAP-mediated peptide transport and MHC-I cell-surface expression in BHV-1 UL49.5 CT-null infected MDBK cells were significant when compared with BHV-1 wt, an additional deletion of BHV-1 UL49.5 residues 30-32 (RRE) resulted in even further significant increases in peptide transport and MHC-I cell surface expression when compared with BHV-1 wt and BHV-1 UL49.5 CT-null. Subsequently, the UL49.5Δ30-32 deletion or UL49.5 30AAA32 substitutions were introduced into BHV-1 wt and their TAP inhibition/MHC-I down-regulation and TAP degradation functions determined in comparison to wt UL49.5 and UL49.5 CT-null. Based on the results, deletion or alanine exchange of UL49.5 residues 30-32 or UL49.5 lacking the CT residues alone prevented UL49.5-mediated bovine TAP1 degradation. Relative to wt UL49.5 or UL49.5 CT-null, a significant increase in peptide transport and MHC-I cell surface expression was seen in UL49.5 30-32 alanine substitution or deletion mutations in the wt background. Nevertheless, peptide transport and MHC-I surface expression was increased even more when UL49.5Δ30-32 and UL49.5 30AAA32 mutations were introduced in the UL49.5 CT-null background. When MDBK cells expressing the wt UL49.5 were infected with the BHV-1 UL49.5 CT-null-, BHV-1 UL9.5Δ30-32, and BHV-1 UL49.5 30AAA32 mutant viruses, the inhibition of peptide transport and down-regulation of MHC-I cell surface expression of the mutant viruses were restored to the BHV-1 wt levels. Taken together, the results of TAP1 degradation, peptide transport inhibitory and MHC-I down regulatory property of the BHV-1 UL49.5 CT-null, BHV-1 UL49.5Δ30-32, BHV-1 UL49.5 30AAA32 mutants in MDBK cells and MDBK cells expressing wt UL49.5, we conclude that: (1) UL49.5 residues 30-32 (RRE) and UL49.5 CT residues (80-96) both are important for TAP1 degradation; and (2) even though primary TAP inhibition domain lies in UL49.5 30-32 residues, the fullest extent of UL49.5-mediated TAP inhibition function additionally required the UL49.5 cytoplasmic tail (CT) residues. Similarly, the fullest extent of UL49.5-mediated down-regulation of MHC-I cell surface expression required both the UL49.5 luminal domain residues 30-32 and the UL49.5 CT residues. In summary, the UL49.5 residues 30-32 and UL49.5 CT residues together inhibit peptide transport and down regulate MHC-I cell surface expression.
Since the mutant UL49.5Δ30-32 CT-null interaction with the gM and gM maturation was unaffected, and the mutant UL49.5 was incorporated in the virion envelope, without wishing to be bound by this theory, we believe that mutant UL49.5 protein conformation was not affected. Results from the calf experiment in the examples below indicated that immunogenicity of and cellular immunity against BHV-1 UL49.5Δ30-32 CT-null mutant virus were enhanced when compared with wt BHV-1. Therefore, by incorporating these UL49.5 mutations in a future BHV-1 marker vaccine, we will improve the vaccine efficacy of the current BHV-1 gE-deleted marker vaccine.
Example 7
BHV-1 UL49.5Δ30-32 CT-Null Mutant and Immune Responses in Calves: Materials and Methods
Cells and Virus Strain.
The MDBK cell line was maintained in Dulbecco's modified Eagle's medium (DMEM) supplemented with 5-10% heat-inactivated fetal bovine serum (FBS). The BHV-1 Cooper (Colorado-1) strain, obtained from the American Type Culture Collection (Cat # CRL-1390) and BHV-1 U149.5Δ30-32 CT-null virus constructed using the parental BHV-1 Cooper strain were propagated and titrated in MDBK cells as described above in Examples 1 and 2.
Antibodies.
Rat anti-bovine IFN-γ-specific MAb (R&D, Cat No. MAB23001), biotinylated goat anti-bovine IFN-γ antibody (R&D), mouse anti-bovine CD8 antibody (VMRD, Inc., Pullman, Wash.; Cat No. CACT80C), APC-conjugated donkey anti-mouse IgG (eBioscience, San Diego, Calif.; Cat. No. 17-4012-82), RPE-conjugated mouse anti-bovine CD4 (AbD Serotec, Raleigh, N.C.; Cat No. MCA 1653PE), mouse anti-bovine CD3 antibody (VMRD, Cat No. MM1A), rat anti-mouse IgG1 microbeads (Miltenyi Biotech, Auburn, Calif., Cat No. 130-047-102) were purchased from the respective commercial sources.
Calf Infection and Challenge.
Calf experiments were performed as published earlier [43]. Briefly, eight BHV-1 and bovine viral diarrhea virus (BVDV) negative, 4-month-old cross-bred calves were selected for the experimental trial. The calves were housed at Louisiana State University (LSU) Agricultural Center large animal isolation facility during the entire experimental period. Animal infection, handling, sample collection and euthanasia protocols were approved by the LSU Institutional Animal Care and Use Committee.
Upon arrival, the calves were randomly allocated into two infected groups containing 3 calves each and one control uninfected group containing two calves. Each group was housed in a biocontainment room for a week prior to experimental infection. Two control calves were inoculated with PBS as sham-infected control. Three calves in a mutant group were inoculated with 1×107 PFU of BHV-1 UL49.5Δ30-32 CT-null mutant virus per nostril and conjunctival sac (total 4×107 PFU). Three calves in a wild-type (wt) BHV-1 group were similarly infected with wt BHV-1 Cooper. On 28 days past infection (dpi), all calves including the uninfected controls were challenged by inoculation of 2×107 PFU/nostril (total 4×107 PFU) of wt BHV-1. Nasal and eye swabs were collected at days 0, 2, 3, 5, 7, 9, 12, 14, 21 and 28 dpi and at days 2, 3, 5, 7, 9 and 12 days post-challenge (dpc) in 1 ml of tissue culture medium supplemented with 2% penicillin and streptomycin. The samples were processed and stored at −80° C. Blood was collected at days 0, 7, 14, 21, 28 dpi and days 7 and 12 dpc for sera and isolation of peripheral blood mononuclear cells (PBMC).
Clinical Evaluations.
Intensive clinical observation of all calves was performed daily for 12 days following primary virus and challenge virus exposures. Rectal temperatures were recorded every other day. Special attention was given to behavior, appetite, cough, ocular and nasal discharges, hyperemia or lesions of the nasal mucosa, conjunctivitis, and abnormal breathing. In the case of nasal discharge, the parameters were scored as follows: 0 when normal, 1 when moderately serous, 2 when severely serous or when mildly mucopurulent, 3 when moderately mucopurulent, and 4 when severely mucopurulent. In the case of depression, as indicated by behavior (e.g., head down, standing in one corner, not eating, and not drinking), the score was 0 when not present, 1 when mild, 2 when moderate, and 3 when severe. When present, hyperemia and ulcers of nasal mucosa were scored as 1 and 2, respectively. Conjunctivitis, coughing, and dyspnea, when present, were each scored as 2. The daily rectal temperature was scored as 1 when it ranged from 39.7° C.-39.99° C., 2 when it ranged from 40.0° C.-40.5° C., 3 when it ranged from 40.6° C.-41° C., and 4 when it was above 41.0° C. [33]. The daily clinical score for each calf was the sum of scores for each parameter. The mean daily clinical score was calculated for each group and compared among groups.
Virus Isolation, Plaque Assay and Virus Neutralization Assay.
Virus titrations were performed as published earlier [33]. BHV-1 specific virus neutralization (VN) titers were determined as published earlier [25]. The titers were expressed as the reciprocal of the highest dilution that caused a 50% reduction in the number of plaques relative to the virus control.
Isolation and Freezing of PBMC.
Blood was collected in tubes containing sodium citrate for an anticoagulant and transported on ice. Peripheral blood mononuclear cells (PBMCs) were isolated using Ficoll-Paque (Ficoll-PaqueTM PLUS, GE Healthcare Life Sciences, Piscataway, N.J.) density-gradient centrifugation as previously published [44]. The PBMCs were resuspended in RPMI-1640 complete medium with 10% FBS. Cell viability was determined by trypan blue exclusion. After determining the cell count, PBMCs were resuspended in 10% FBS-RPMI-1640 medium containing 10% DMSO at a concentration of 5×106 cells/ml and frozen at −20° C., transferred into −80° C., and stored in liquid nitrogen until use.
Gamma Interferon (IFN-γ) Enzyme-Linked Immunospot Assay (ELISPOT) Assay.
ELISPOT was performed to detect IFN-γ+ T cells as published earlier [45], with minor modification. Briefly, an ELISPOT plate (Millipore, Billerica, Mass.) was coated overnight at 4° C. with 100 μl/well (10 μg/ml) of purified rat anti-bovine IFN-γ-specific MAb (R&D Systems, Minneapolis, Minn.; Cat. #MAB 23001). After washing with 0.25% Tween 20-PBS, the plates were blocked with 5% FBS-PBS at 37° C. for 2 h. Then 2×105 PBMCs mixed with 20 μg/ml of the UV-inactivated BHV-1 UL49.5Δ30-32 CT-null purified virion antigen (Ag) were added into each well. For each PBMC sample, three replicate wells were inoculated. After 24 h, the plates were washed with PBS and incubated with 200 μl of H2O for cell lysis. The plate was incubated (for 2 h) with 50 μl (2 vg/ml) of biotinylated goat anti-bovine IFN-γ Ab per well. Subsequently, plates were incubated for 2 h with 100 μl/well of streptavidin-AP (SouthernBiotech, Birmingham, Ala.). Finally, after washing, 100 μl/well of 1-step NBT/BCIP (Pierce Biotechnology, Rockford, Ill.) was added and incubated for 10 min to develop visible spots. The plates were washed with water, air dried, and the spots were counted by using an automated ELISPOT reader system (Cellular Technologies LTD., Shaker Heights, Ohio) with ImmunoSpot software. The mean number of spots from triplicate wells was adjusted to 1×106 PBMC, and the ELISPOT data were expressed as the mean±SD. The BHV-1 Ag-specific IFN-γ responses were calculated by subtracting the number of spots formed in negative control wells (medium only) from the number of spots formed in the sample wells in response to the BHV-1 Ag stimulation.
CD8+ Lymphocyte Proliferation Assay.
2×105 PBMCs/well from each calf were labeled with 2 mM/ml of CFSE (5,6-carboxyfluorescein diacetate succinimidyl ester) using the CellTrace CFSE cell proliferation kit (Invitrogen, Carlsbad, Calif.) as published earlier [46]. The CFSE-labeled cells were stimulated with 10 μg/ml of the UV-inactivated BHV-1 UL49.5Δ30-32 CT-null virion antigen for 96 h in a CO2 incubator. Non-stimulated cells served as negative control. At the end of each assay, the cells were harvested by centrifugation and incubated with mouse anti-bovine CD8 antibody for 20 min, subsequently stained with APC-conjugated donkey anti-mouse IgG and analyzed by flow cytometer.
CD8+ T Cell-Mediated Cytotoxic Assay.
For collection of target cells, 5×106 of PBMC isolated from each calf at 0 dpi were incubated with 20 μl of mouse anti-bovine CD3 antibody for 20 min. After washing with PBS, the cells were incubated with 20 μl of rat anti-mouse IgG1 microbeads for 10 min, passed over a magnetized MS column (Miltenyi Biotech, Auburn, Calif.), and washed three times in the column with PBS buffer. The unbound cells (wash-outs) were collected and counted for the total CD3-negative cell number as described [46]. The CD3-negative PBMCs were pulsed with the BHV-1 virion Ag (10 μg/ml) for overnight incubation, and then the sensitized target cells were labeled with 10 μl of 3,3′-dioctadecyloxacarbocyanine (DiOC, Invitrogen) stock solution according the manufacture's protocol and resuspended in 10% FBS-RPMI-1640 medium at a concentration of 1×106 cells/ml.
For CD8+ T cell isolation, PBMC suspensions from an individual calf at different time-points were incubated with anti-bovine CD8 antibody, washed in PBS twice, and then incubated with rat anti-mouse IgG1 microbeads. The cell suspensions were then passed over a magnetized MS column and washed in the column three times with PBS. The cells bound to the column were eluted by forcing 2 ml PBS through the column with a plunger [46]. The total number of column-enriched CD8+ T cells were counted and used as effector cells to mix with the DiOC labeled target cells with E:T ratio 20:1. The target/effector cell mixture was stained with propidium iodide (PI) solution and incubated 37° C. for 4 h and analyzed by FACS [35].
Statistical Analysis.
Analysis of variance was used to analyze statistical significance of the differences between the respective average data obtained for the three treatment groups; a P value of <0.05 was used as the criterion for statistical significance.
Example 8
BHV-1 UL49.5Δ30-32 CT-Null Mutant and Pathogenicity in Calves
Virus Replication.
FIGS. 11A and 11B illustrate the results of an analysis of nasal and ocular virus shedding in calves either sham-infected or infected with BHV-1 wt or BHV-1 UL49.5Δ30-32 CT-null viruses from samples taken at the indicated intervals following primary infection/immunization and following a BHV-1 wt nasal challenge. As shown in FIGS. 11A and 11B, virus was detected in nasal and ocular swabs during days 2-9 dpi in calves infected with both viruses. No significant difference was found in the amounts of virus shed from the nose and eye of calves infected with the either virus. As expected, no virus was detected in nasal and ocular swabs in the sham-infected animals.
Clinical Signs.
Calves infected with either wt BHV-1 or BHV-1 UL49.5Δ30-32 CT-null virus had typical signs of BHV-1 virus infection, including fever, depression, reduced appetite, ocular and nasal discharge, hyperemia and reddening of nasal mucosa, mild ulceration of the nasal mucosa, and coughing. FIG. 12A illustrates the mean rectal temperature for BHV-1 wt-(♦), BHV-1 UL49.5Δ30-32 CT-null mutant-(Δ) or sham-infected (o) calves. The data is presented as the mean of two calves (mock) or three calves (virus-infected groups) and standard deviations between the animals at each time point. As shown in FIG. 12A, the highest rectal temperatures (39.7 to 40.0° C.) were recorded for two days (2-3 dpi) in the BHV-1 wt-infected calves. A similarly high rectal temperature was also recorded in the BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves beginning one day later (3 dpi). In both the BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null mutant infected groups, a mild fever (greater than about 39° C.) lasted until 5 dpi.
FIG. 12B illustrates the median clinical score for BHV-1 wt-(♦), BHV-1 UL49.5Δ30-32 CT-null mutant-(Δ) or sham-infected (o) calves. The data is presented as a mean of two calves (mock) or three calves (virus-infected groups) and standard deviations between the animals at each time points. As shown in FIG. 12B, the high daily clinical scores ( ̃4-5) were obtained for the BHV-1 wt-infected calves for two days (2-3 dpi) while the highest clinical score (4) for the BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves was recorded for only one day, a day later at 3 dpi. Therefore, BHV-1 UL49.5Δ30-32 CT-null virus retained a significant pathogenic property, but as compared with BHV-1 wt, the pathogenesis was slightly attenuated in calves.
Example 9
Humoral and Cellular Immune Responses Following BHV-1 UL49.5Δ30-32 CT-Null Mutant Virus Infection in Calves
Virus Neutralizing Antibody Response.
FIG. 13A illustrates an analysis of BHV-1 virus-specific neutralizing antibody (VN Ab) response in the mock-infected and both BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null groups of virus-infected calves following primary infection (immunization) and after BHV-1 wt intranasal challenge. The VN antibody titers were determined in sera collected at the indicated intervals; and the titers were expressed as the reciprocal of the highest dilution that caused a 50% reduction in the number of plaques relative to the virus control (100 PFUs). The symbols “*” and “**” denote P values of <0.05 and <0.01, respectively, for the average VN titers in the UL49.5 mutant group when compared with the sham-infected group; and the symbols “x” and “xx” denote P values of <0.05 and <0.01, respectively, when results from the BHV-1 UL49.5Δ30-32 CT-null mutant group were compared to those for the BHV-1 wt infected group.
As shown in FIG. 13A, both BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null virus-infected calves generated similar virus neutralizing (VN) antibody titers following primary infection, but the VN antibody response was quicker in the BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves. While BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves generated an average VN titer of 55 at 14 dpi, it took an additional two weeks (at 28 dpi) for BHV-1 wt virus-infected calves to generate a comparable average VN titer of 58. At 14 dpi, the BHV-1 wt virus-infected calves had an average VN titer of only 27 (two fold less compared with the UL49.5 mutant-infected calves). The BHV-1 UL49.5 mutant infected calves maintained a high VN titers 55-57 during the time period from about 14 dpi to about 28 dpi (FIG. 13A). As expected, sham infected calves were negative for VN titers during this period (FIG. 13A).
Cellular Immune Responses.
The cellular immune responses in calves infected either with BHV-1 UL49.5Δ30-32 CT-null mutant or BHV-1 wt virus were evaluated based on lymphocyte proliferation and number of IFN-γ secreting cells in PBMCs collected following virus infection. Additionally, CD8+T cells from the infected calves were tested for their specific cytotoxic or lysing property of viral antigen-specific target cells. For each assay, PBMCs and CD8+T cells isolated from the calves in the infected group prior to infection (at day 0) as well as from sham-infected calves isolated on the corresponding days post infection served as negative controls.
FIG. 13B illustrates an analysis of BHV-1 IFN-γ-producing T cell response in the mock-infected and both groups of virus-infected calves following primary infection (immunization) and after BHV-1 wt intranasal challenge. The measurement of numbers of IFN-γ-producing T cells in the BHV-1 Ag-stimulated PBMCs were determined by ELISPOT. In FIG. 13B, the symbols “*” and “**” denote P values of <0.05 and <0.01, respectively, for the mean number of IFN-γ secreting cells in the UL49.5 mutant group when compared with the sham-infected group; and the symbols “x” and “xx” denote P values of <0.05 and <0.01, respectively, when results from the BHV-1 UL49.5Δ30-32 CT-null mutant group were compared to those for the BHV-1 wt infected group. At 7 and 14 dpi, compared with BHV-1 wt-infected calves, BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves developed two fold more IFN-γ secreting T cells (P<0.05; FIG. 13B). Notably, levels of IFN-γ secreting T cells above the controls were reached a week earlier (day 7) in BHV-1 UL49.5Δ30-32 CT-null-infected calves than the BHV-1 wt-infected calves (day 14) (FIG. 13B).
FIG. 14A illustrates the results of FACS analysis of CD8+ T cell proliferation in the mock-infected, BHV-1 wt- and BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves following infection (immunization) and after BHV-1 wt challenge. In FIG. 14A, the symbols “*” and “**” denote P values of <0.05 and <0.01, respectively, for the percentages of individual parameters in the UL49.5 mutant group when compared with the sham-infected group; and the symbols “x” and “xx” denote P values of <0.05 and <0.01, respectively, when results from the UL49.5 mutant group were compared to those for the BHV-1 wt infected group. The data presented in FIG. 14A show that PBMCs from BHV-1 UL49.5Δ30-32 CT-null mutant virus infected calves had a significantly higher CD8+ lymphocyte proliferation (P<0.01) at 7 dpi compared with that of BHV-1 wt virus-infected calves (>3 fold higher) and of sham-infected calves (>5 fold higher). At 14, 21 and 28 dpi, PBMCs from both BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null mutant infected calves developed significantly higher CD8+ T cell responses compared with the sham-infected calves. However, there was no significant difference of CD8 T cell expansion in PBMC between the BHV-1 UL49.5Δ30-32 CT-null mutant- and BHV-1 wt infected groups (FIG. 14A).
To compare the relative ability of calves infected either with BHV-1 wt or with BHV-1 UL49.5Δ30-32 CT-null virus in generating a viral antigen-specific CTL response, CD8+ T cells from sham-infected or respective virus-infected calves (isolated at 0, 7, 14, 21 and 28 dpi) were incubated with auto-sensitized target cells pulsed by the UV-inactivated BHV-1 antigen (Ag). FIG. 14B illustrates the results of an analysis of cytotoxicity of CD8+ T cells in the mock-infected, BHV-1 wt- and BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves following infection (immunization) and after BHV-1 wt challenge. In 14B, the symbols “*” and “**” denote P values of <0.05 and <0.01, respectively, for the percentages of individual parameters in the UL49.5 mutant group when compared with the sham-infected group; and the symbols “x” and “xx” denote P values of <0.05 and <0.01, respectively, when results from the UL49.5 mutant group were compared to those for the BHV-1 wt infected group. As shown in FIG. 14B, 48-50% of the target cells (P<0.01) were lysed when incubated with CD8+ T cells isolated from infected calves for both viruses at 14, 21 and 28 dpi, but not when the cells were incubated with CD8+ T cells from the sham-infected control calves. However, at 7 dpi, the CTL activity of the isolated CD8+ T cells from the BHV-1 wt- and BHV-1 UL49.5 mutant-infected calves was 9% and 45%, (P<0.01), respectively (FIG. 14B). The results of CD8+ T cell proliferation, BHV-1-specific IFN-γ+ T-cell response, and CTL activity assays all indicate that BHV-1 UL49.5Δ30-32 CT-null mutant virus induced significant cellular immune responses as early as 7 dpi. A similar response was delayed in BHV-1 wt-infected calves by about 1 week.
Protection Against Challenge with BHV-1 wt.
To determine protective efficacy of BHV-1 UL49.5Δ30-32 CT-null mutant-infected/vaccinated calves and to compare recall cellular immune responses in calves infected with BHV-1 wt with those of BHV-1 UL49.5Δ30-32 CT-null-infected calves, sham-infected and the respective virus-infected calves were challenged intranasally on 28 dpi with 4×107 PFU of BHV-1 wt virus. After challenge, calves were monitored for clinical signs and rectal temperatures. The sham-infected calves had elevated temperatures (>40° C.) and high clinical scores (4-5) between days 2-7 post challenge (FIGS. 12A and 12B). In contrast, the calves infected previously, either with BHV-1 UL49.5Δ30-32 CT-null or BHV-1 wt virus, had nearly normal body temperatures (slight or no increase in body temperature) and low clinical scores.
In addition, the amount of virus shedding in the nasal fluids was determined. As shown in FIG. 11A, both BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null virus-infected calves shed 3 to 4 logs lower amounts of virus in the nasal swabs between days 2-5 post challenge, as compared with the sham-infected control calves. Nasal virus shedding in the BHV-1 UL49.5Δ30-32 CT-null virus-infected group lasted for 5 days while it lasted for 7 and 9 days for BHV-1 wt virus-infected and sham-infected calves, respectively.
To determine relative protective immune responses in BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves compared with sham-infected calves against the BHV-1 wt challenge infection, neutralizing antibody and cellular immune responses in calves were compared among the groups. In addition, recall virus neutralizing and cellular immune responses in BHV-1 wt verses BHV-1 UL49.5Δ30-32 CT-null-infected calves were critically analyzed. The results, as discussed above, show that relative to sham-infected calves, both BHV-1 wt- and BHV-1 UL49.5Δ30-32 CT-null mutant-infected/immunized calves showed significantly increased virus neutralizing antibody titers (P<0.01), increased CD8+ T cell proliferation (P<0.01, >3-5 fold higher), increased IFN-γ+ T cell response (P<0.01, >38 to 60 fold higher) and increased CTL activity (P<0.01, >3 fold higher) following a challenge with BHV-1 wt (7-12 days post challenge).
When the recall virus neutralizing antibody responses were compared at 7 days post challenge, calves infected with the BHV-1 UL49.5Δ30-32 CT-null virus had attained a higher VN titer (200) as compared with BHV-1 wt virus infected calves (115) (FIG. 13A), but the difference was not statistically significant (P>0.05). The magnitude of the recall IFN-γ+ T cells and CD8+ T cell proliferation in the BHV-1 UL49.5Δ30-32 CT-null virus-infected calves was significantly higher than that seen for the BHV-1 wt virus infected calves (P<0.05 and P<0.01, respectively). With respect to CTL function in lysing the BHV-1-pulsed target cells, there was no significant difference between the two virus-infected groups.
Taken together, based on the shorter duration of virus shedding, virus neutralizing and cellular immune responses, both the BHV-1 wt virus- and BHV-1 UL49.5Δ30-32 CT-null virus-infected calves were protected against challenge with BHV-1 wt. However based on cellular immune responses, protection in the BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves was significantly better than that of BHV-1 wt virus-infected calves.
As shown above, the effect(s) of the BHV-1 UL49.5Δ30-32 CT-null virus mutation in calves was determined with respect to nasal viral replication and nasal viral shedding properties following intranasal infection. The BHV-1 UL49.5Δ30-32 CT-null mutant virus was shown to replicate efficiently. For the first 5 days post infection, the amount of BHV-1 UL49.5Δ30-32 CT-null mutant virus detected in the nasal swabs were similar to that from the wildtype (wt) BHV-1 infected calves. However, at 7 and 9 dpi slightly reduced amounts of BHV-1 UL49.5Δ30-32 CT-null mutant virus were recovered from the nasal swabs. This indicated that there was no effect of UL49.5 mutation on the initial viral replication and nasal viral shedding. Within 14 days after primary infection, BHV-1 UL49.5Δ30-32 CT-null mutant virus-infected calves had a VN titer of 55, which was not attained until two weeks later (28 dpi) in the wt virus-infected calves. In addition, PBMCs from calves infected with the BHV-1 UL49.5Δ30-32 CT-null mutant virus had significantly increased CD8+ cell proliferation and CD8+ T cell mediated cytotoxicity at 7 dpi, and significantly greater numbers of IFN γ+ T cells at 7 and 14 dpi. But at 21 dpi, there was no significant difference in cellular immune responses between the BHV-1 wt and BHV-1 UL49.5Δ30-32 CT-null mutant groups. BHV-1-mediated transient suppression of cellular immune responses occurs during the early phase of infection [2, 34]. Without wishing to be bound by this theory, it is believed that the significant increase in cellular immune response in BHV-1 UL49.5Δ30-32 CT-null mutant virus infected calves at 7 dpi is due to increased presentation of viral peptide in the context of MHC-I. Since IFN-γ alone is known to up-regulate the class II antigen presenting pathway and thus promote peptide-specific activation of CD4+ T cells, the increased IFN-γ production by T cells in calves infected with BHV-1 UL49.5Δ30-32 CT-null virus, both at 7 and 14 dpi, when compared with BHV-1 wt-infected calves, contributed to the higher and early VN antibody response. In summary, the results of nasal virus shedding and immune responses following primary infection in calves clearly demonstrated that BHV-1 UL49.5Δ30-32 CT-null virus induced better primary immune responses than BHV-1 wt and had similar virus replication.
The protective effects of prior infection and immunization with either BHV-1 UL49.5Δ30-32 CT-null mutant or BHV-1 wt on a subsequent infection from a challenge with wt BHV-1 were then compared with respect to nasal virus shedding, clinical scores, VN titers and cellular immune response. Relative to the control uninfected group, both the wt BHV-1 and BHV-1 UL49.5Δ30-32 CT-null mutant infected groups showed significant protection against wt BHV-1 challenge infection. There were significant reductions in nasal virus shedding, clinical scores and rectal temperatures. In addition, both infected groups exhibited rapid recall immune responses such as significant increase in VN titers, IFN-γ+ T cells, CD8+ T cell proliferation and CD8+ T cell-mediated cytotoxicity.
When the values for all the above clinical parameters were compared between the BHV-1 UL49.5Δ30-32 CT-null mutant and BHV-1 wt-infected groups, the duration of nasal virus shedding was two days shorter in the UL49.5 mutant group. Consistent with these results, following wt BHV-1 challenge, the spike in VN titers and the increase in IFN-γ+ T cells and CD8+ T cell proliferation in UL49.5 mutant infected calves were earlier and significantly increased at 7 days post challenge. Since the duration of nasal virus shedding was two days shorter in the UL49.5 mutant infected calves, the earlier virus clearance was probably due to the combined effect of earlier and increased VN antibodies and cellular immune responses. This property is certainly beneficial and desirable in a live, attenuated, genetically engineered vaccine candidate. Since the BHV-1 UL49.5Δ30-32 CT-null mutant virus retained some degree of virulence, incorporation of additional mutations, such as gE cytoplasmic tail and US9 deletions as described below in Examples 10 and 11, was used to attenuate the virus and ensure that the latent vaccine virus will not be shed following reactivation from latency, and to incorporate a serological marker.
Example 10
Generation of BHV-1 gE Cytoplasmic Tail and Us9 Deleted Virus in the Backbone of BHV-1 UL49.5Δ30-32 CT-Null
We have made a new mutant virus that can be used as a vaccine by introducing additional gE cytoplasmic tail- (gE CT) and Us9 ORF deletions (gE CTΔ/Us9Δ) in the backbone of the BHV-1 UL49.5 (gN) luminal domain residues 30RRE32Δ and UL49.5 CT-null (cytoplasmic tail truncated) virus (BHV-1 UL49.5Δ30-32 CT-null virus, as described above in Examples 1 and 2, and as shown in FIGS. 15B and 15C). To introduce the gE CTΔ/Us9Δ deletions, first a BHV-1 gE CT-Us9 deletion vector (pBHV-1 gE CTΔ/Us9Δ) was constructed. FIG. 15A is a schematic illustration of the BHV-1 genome showing the locations of the BHV-1 UL49.5, gE, Us9, and bICP22 genes, with the orientations of gE, Us9, and bICP22 gene transcriptions indicated by arrows. FIG. 15B is a schematic illustration of the BHV-1 wt UL49.5 residues, highlighting the luminal domain residues of BHV-1 wt (SEQ ID NO:35) and of BHV-1 UL49.5Δ30-32 CT-null (SEQ ID NO:36). FIG. 15C is a schematic illustration of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viral genome.
Construction of the Deletion Vector, pBHV-1 gE CTΔ/Us9Δ.
First, using primer pair P1(For) SEQ ID NO:19/P2 (Rev) SEQ ID NO:20 (as shown in Table 2, and FIGS. 16A and 16B) and BHV-1 Cooper strain genomic DNA as a template, a 1.35 kb EcoRI/KpnI fragment spanning the entire gE ectodomain and the transmembrane domain was amplified. FIG. 16A illustrates the strategy for the pBHV-1 gE CTΔ/Us9Δ deletion vector construction, showing the location of the primers listed in FIG. 16B and in Table 2. FIG. 16B shows the sequences of the primers (P1, SEQ ID NO:19; P2, SEQ ID NO:20; P3, SEQ ID NO:21; and P4, SEQ ID NO:22) used to generate pBHV-1 gE CTΔ/Us9Δ. Primers P1 and P2 incorporate the EcoRI and KpnI restriction sites, respectively. The Poly A and Stop sequences designed in P2 are complementary, and the gE nucleotide numbers, 1329-1353, refer to nucleotide sequence spanning the gE, Us9 and part of the bICP22 genes of the BHV-1 genomic sequence (GenBank accession #AJ004801) and as as shown in FIG. 18 (SEQ ID NO:42).
FIG. 17A shows the PCR amplification of partial BHV-1 gE ORF (gE ectodomain and transmembrane domains, from nucleotides (NT) 1-1353 in FIG. 18, SEQ ID NO:42). The P1 forward primer (SEQ ID NO:19) incorporated the EcoRI site (at 5′ end) and the P2 reverse primer (SEQ ID NO:20) introduced three stop codons (in all 3 frames) immediately downstream of gE NT 1353 or corresponding amino acid residue 451 (Ala) as noted in FIG. 18. In addition, the P2 primer (SEQ ID NO:20) incorporated a consensus PolyA (AATAAA) and KpnI site (FIG. 16B) at the 3′ end of the amplified fragment. The PCR generated fragment was digested with EcoRI and KpnI and cloned into the EcoRI/KpnI sites of pGEM-7Z plasmid (Promega, Madison, Wis.), resulting in plasmid clone pBHV-1 gE CTΔ.
Next, using primer pair P3 (For) (SEQ ID NO:21)/P4 Rev (SEQ ID NO:22) (shown in Table 2 and FIG. 16B), a 1,234-bp Us9 downstream fragment containing bICP22 sequence was amplified. FIG. 17B shows the PCR amplification of the BHV-1 Us9 downstream 1.1 kb fragment containing partial bICP22 and Us9/bICP22 intergenic sequence. The P3 (SEQ ID NO:21)/P4 (SEQ ID NO:22) primer pair introduced KpnI and BamHI sites at the 5′ and 3′ ends, respectively of the amplified fragment. The KpnI/BamHI digested PCR fragment was then cloned into the KpnI/BamHI sites of pBHV-1 gE CTΔ constructed above, resulting in pBHV-1 gE CTΔ-Us9Δ as schematically illustrated in FIG. 19. FIG. 20 shows the nucleotide sequence of the gE ectodomain-bICP from the plasmid clone pBHV-1 gE CTΔ/Us9Δ DNA. The gE aa451 (alanine) encoded by GCA is marked by an arrow in FIG. 20. In addition, the triple stop codons, poly A sequence, and KpnI sites immediately left (downstream of bICP22 based on the gene orientation shown in FIG. 15A) of the bICP22 are shown. The nucleotide sequences of the insert spanning the gE ectodomain and part of bICP22 in the plasmid clone pBHV-1 gE CTΔ/Us9Δ was determined by sequencing and aligned with wt BHV-1 gE ectodomain sequence (data not shown). The expected changes were verified by the sequencing and alignment. The resulting clone was shown to have the following: (a) NT 1354-2357 (SEQ ID NO:42; FIG. 18), containing the gE CT, the gE-Us9 intergenic region, and the entire Us9 ORF coding sequences were deleted and a 21 bp fragment containing triple stop codon, Poly A sites, and a KpnI site was incorporated as shown in FIG. 16A and FIG. 20 (SEQ ID NO:43); and (b) the remaining gE coding region (NT 1-1353, or corresponding amino acid residues 1-451) (FIG. 18) was placed immediately adjacent to and left of the bICP22 gene (FIG. 18 and FIG. 20).
Construction and Characterization of BHV-1 UL49.5Δ30-32 CT-Null/gE CTΔ/Us9Δ Virus.
To generate a BHV-1 gE CT- and Us9-deleted recombinant virus, EcoRI digested (linearized) pBHV-1 gE CTΔ/Us9Δ DNA and full-length BHV-1 UL49.5Δ30-32 CT-null virus genomic DNA (as described above in Examples 1 and 2) were co-transfected in MDBK cells using Lipofectamine (Invitrogen, Carlsbad, Calif.), as schematically shown in FIG. 21. Several recombinant viral plaques showing small plaque phenotype were picked. Two putative recombinant virus plaques (plaques #7 and #8) were plaque purified three times and were analyzed by PCR. FIG. 22 shows the strategy and location of the primers used for PCR amplification and sequencing for verification of the BHV-1 gE CTΔ/Us9Δ recombinant virus. The sequences of the primers shown in FIG. 22 are given in Table 3. FIG. 23 shows the results of the PCR identification of plaques #7 and #8 as compared to BHV-1 wt and BHV-1 Us9Δ. The PCR verified the presence or absence of the BHV-1 gE CT fragment using primer pairs, P7 (SEQ ID NO:28) and P8 (SEQ ID NO:29) (FIG. 23A), of the BHV-1 Us9 fragment using primer pairs, P11(SEQ ID NO:32) and P12 (SEQ ID NO:33) (FIG. 23B), and of the BHV-1 gE ectodomain fragment using primer pairs, P5 (SEQ ID NO:26) and P6 (SEQ ID NO:27) (FIG. 23C). As depicted in FIG. 23B, the Us9-specific band was deleted in the case of putative recombinant #7 and 8 and in control Us9Δ virus (BHV-1Us9Δ), but not in wt BHV-1. However, as expected and as depicted in FIG. 23C, gE ectodomain and gE transmembrane sequences containing fragment were present in all the viruses tested.
The nucleotide sequence of the gE-bICP 22-specific PCR fragment amplified from the putative recombinant #7 BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viral DNA by using primer pair P9/P10 (Table 3; as shown in FIG. 22) was determined (data not shown). As expected, the gE ORF was terminated immediately following the NT 1353 (FIG. 18; SEQ ID NO:42) or codon GCA for gE residue 451 ala. In addition, a Poly A sequence and a KpnI site was found to be incorporated immediately before and adjacent to the bICP22 sequence. Therefore, the entire gE CT and Us9 coding regions (NT 1354-2357 in FIG. 18) of the putative recombinant virus #7 were deleted.
In addition, the nucleotide sequences of the UL49.5 ORF specific PCR fragment (Query) amplified from the putative recombinant #7 BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viral DNA using primer pair N1 and N2 (Table 3; shown in FIG. 22) was determined and compared with the wt UL49.5 sequence (Gen Bank accession #AJ004801). As expected, the UL49.5 sequence for the putative recombinant virus #7 contained the UL49.5 wt sequences but with residues 30-32 deleted, residues 80-81 deleted, and in addition contained a stop codon immediately following the UL49.5 residue 79, which truncated the entire UL49.5 cytoplasmic tail (data not shown).
To further verify the UL49.5Δ30-32 CT-null expressed by the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ putative recombinant viruses, immuno-blotting analyses were performed. FIG. 24 shows the results of an immunoblotting analysis of UL49.5Δ30-32 CT-null expression in the mutant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus-infected MDBK cells. Uninfected (mock)-, BHV-1 wt-, BHV-1 gE Am453-, BHV-1 Us9Δ-, and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant viruses (#7 and #8) infected cell lysates were separated by a 5-20% linear gradient SDS-PAGE and incubated with rabbit anti-BHV-1 UL49.5 polyclonal Ab. The BHV-1 gE Am453 was made as previously described [32], and is mutated such that a stop codon prevents the expression of the CT tail in the protein. As shown in FIG. 24, both the putative recombinant viruses (#7 and #8) depicted a slightly smaller UL49.5 band relative to wt UL49.5 in BHV-1 wt, BHV-1 Us9-deleted (control) and BHV-1 gEAm453 (CT truncated control) virus-infected cell lystes. BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus was shown to have a UL49.5 of approximately 8 kDa, which is consistent with the predicted molecular mass of UL49.5 lacking the cytoplasmic tail residues.
FIG. 25 shows the results of an immunoblotting analysis of BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ showing mutant gE (CTΔ) incorporation in the virion envelope. Partially purified virions of BHV-1 wt, BHV-1 gE Am453, BHV-1 Us9Δ, and two putative BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant viruses (#7 and #8) were separated by a 10% SDS-PAGE and incubated with rabbit anti-BHV-1 gE peptide-specific polyclonal antibody. BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus has a gE of approximately 65 kDa and is similar to BHV-1 gE Am453 virus, which is consistent with the predicted molecular mass of gE lacking the cytoplasmic tail residues. In contrast, the wt gE expressed by the BHV-1 wt and BHV-1 Us9Δ viruses was about 92 kD. Also, shown in FIG. 25 for WT and Us9Δ, are bands at about 65 kD which represents unprocessed gE.
FIG. 26 illustrates the results of an immunoblotting analysis of the same cell lysates as in FIG. 25, but using rabbit anti-BHV-1 gE CT-specific antibody for incubation. A 92 kD, gE-specific band is detectable in BHV-1 wt and BHV-1 Us9Δ infected cell lysates, but not in cases of BHV-1 gE Am453 and BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus. The 68 kD band recognized by gE ectodomain-specific antibody in FIG. 25 was absent in the BHV-1 gEAm453, recombinant #7 and #8 lysates. Therefore, the gE CT-specific amino acids were deleted in the case of both the putative recombinant viruses #7 and #8, however, they both expressed the gE ectodomain and the gE transmembrane domain residues (FIG. 25).
FIG. 27 shows the results of an immunoblotting analysis showing the same cell lysates as above but incubating with rabbit anti-BHV-1 Us9-specific polyclonal serum. A 28 kDa Us9 specific band is detectable in BHV-1 wt and BHV-1 gE Am453 infected cell lysates, but as expected not seen in BHV-1 Us9Δ and BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ mutant virus. Therefore, the entire Us9 coding region was deleted in the putative recombinants #7 and #8.
When the same lysates were immunoblotted with mouse anti-BHV-1 envelope glycoprotein gC-specific MAb F2 (Chowdhury et al., 2000), as shown in FIG. 28, similar amounts of gC were detected for all the viruses. Taken together with these results, the absence of Us9-specific (FIG. 27) and of gE cytoplasmic-tail specific (FIG. 26) bands in the respective immunoblots were due to specific deletions and not due to loading errors.
Example 11
Stability of BHV-1 UL49.5Δ30-32 CT-Null/gE CTΔ/Us9Δ Virus Upon Five Consecutive Passages
To determine the stability of specific UL49.5, gE CT and Us9 mutations and/or deletions, one of the putative recombinants (#7) was selected for serial passages in MDBK cells. Virus-infected cell DNA was then extracted from passage 0 (P0; original stock), after three passages (P3), and after five passages (P5). The virus-infected cell DNA was then used for PCR amplification and for verification using UL49.5 ORF-specific and/or gE-bICP22-specific primer pairs as shown in FIG. 29A and as listed in Table 3. FIG. 29B shows the results of PCR amplification of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus DNA at passage 0 (P0), three serial passages (P3), and five serial passages (P5) using the UL49.5-specific primer pair of UL49.5-1/UL49.5-2 as shown in Table 3 and FIG. 29A. FIG. 29C shows the results of PCR amplification of the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus DNA at passage 0 (P0), three serial passages (P3), and five serial passages (P5) using the gE-ICP22 primer pair of P9/P10 as shown in Table 3 and FIG. 29A.
As depicted in FIG. 29B, the UL49.5-specific primer pair (UL49.5-1/UL49.5-2) amplified similar size ( ̃400 bp) fragments in P0, P3 and P5. Since only 57 nucleotides were deleted in the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus, the size difference between the UL49.5-specific band amplified from the BHV-1 Wt and the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ was not readily obvious. However, the nucleotide sequence analysis of the PCR fragments generated from P0, P3 and P5 verified that all contained the intended deletions and truncations (data not shown).
When the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus-infected cell DNA from P0, P3 and P5 were used for PCR amplification using the gE-bICP22-specific primer pair P9/P11 (Table 3; FIG. 29C), an identical 300 bp fragment was amplified from the P0, P3 and P5 samples from the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus. In contrast, an approximately 1,300 bp fragment was amplified from the BHV-1 wt control DNA. Since 1003 nucleotides spanning the gE CT, entire Us9 and a part of Us9-bICP22 intergenic region were deleted (see FIG. 18 and FIG. 20) in the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus, the results were consistent with the deletion size. Finally, the nucleotide sequence results of the 300 bp PCR fragments generated from P0, P3 and P5 showed that the deleted sequences spanning the gE CT-Us9/bICP22 regions was not altered following the five cell passages (data not shown). Therefore, BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus was stable after 5 cell culture passages.
The BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus stock was tested for bacterial, Mycoplasma and bovine viral diarrhea virus (BVDV) contamination, and all test results were negative for any contamination (data not shown).







TABLE 2







List of primers used for generation and verification of pBHV-1 gE CTΔ/Us9Δ deletion vector









Primer
Name
Sequence





gE
P1 (For)
5′-GCGAGCTGCGAATTCGGGAACGGCGCACGCGAGAGATG-3′ (EcoRI)


ectodomain
SEQ ID NO: 19




P2 (Rev)
5′-gcGGTACCtttattagtcagttaTGCGCGGCGCGCGCACACCCGAACG-3′ (KpnI)



SEQ ID NO: 20



 


Us9
P3 (For)
5′-CCGCGAGTA GGTACCGTCTAATTTTTTCCGCACGC-3′ (KpnI)


downstream
SEQ ID NO: 21




P4 (Rev)
5′-CATCGACGTCAGGATCCTCTTCCGCTGCATCGCCA-3′ (BamHI)



SEQ ID NO: 22



 


gE
pUC/M13 For
5′-CGCCAGGGTTTTCCCAGTCACGAC-3′


sequencing
SEQ ID NO: 23




P2 (Rev)
5′-gcGGTACCtttattagtcagttaTGCGCGGCGCGCGCACACCCGAACG-3′



SEQ ID NO: 20



 


Us9 downstream
P3 (For)
5′-CCGCGAGTA GGTACCGTCTAATTTTTTCCGCACGC-3′


sequencing
SEQ ID NO: 21




pUC/M13 Rev
5′-TCACACAGGAAACAGCTATGAC-3′



SEQ ID NO: 24
















TABLE 3







List of primers used for identification BHV-1 UL49.5Δ30-32CT-null/gE CTΔ/Us9Δ recombinant


virus and verification deleted and/or mutated sequences stability















Se-





Expected
quencing


Gene
Name
Primer sequences
PCR size
analysis





UL49.5
UL49.5-1
agagcgccagcgagtcgggctc (NT -80 to -58 with respect
WT: 340 bp
Yes



SEQ ID
to UL49.5 stop codon (ATG) based on GenBank Accession
Mutant:




NO: 12
No. AJ004801.1)
340bp




UL49.5-2
cccgctggcgcccatgagccta (complementary to UL49.5 NT





SEQ ID
288-308 based on GenBank Accession No. AJ004801.1))





NO: 25





 


gE
P5 (For)
cgtttacaagccgcggacgtgcgcgacatg
WT: 1370 bp
Yes


ectodomain
SEQ ID
(NT -27 to 3 with respect to gE stop codon (ATG)
Mutant:




NO: 26
based on GenBank Accession No. AJ004801.1))
1370bp




P6 (Rev)
tttattagtcagttatgcgcggcgcgcgcacacccgaacg





SEQ ID
(complementary gE NT 1328-1354, FIG. 4; based





NO: 27
on GenBank Accession No. AJ004801.1))




 


gE CT
P7 (For)
atgatcgcagccctcgccgttcgggtgt (gE nucleotides
WT: 410 bp




SEQ ID
1315-1339, FIG.4; based on GenBank Accession No.
Mutant:




NO: 28
AJ004801.1))
negative




P8 (Rev)
gtagcggaggatggacttgagtcgc (complementary gE NT





SEQ ID
1704-1728, FIG. 4; based on GenBank Accession





NO: 29
No. AJ004801.1))




 


gE-ICP22
P9
caggcccaccgctcaccagcgag (gE NT 1214-1236,
WT: 1350 bp
Yes



SEQ ID
FIG. 4; based on GenBank Accession No. AJ004801.1))
Mutant:




NO: 30

400bp




P10
gagccggagctttggcccgctcgct





SEQ ID
(complementary to BICP22 NT 2658-2683, FIG. 4;





NO: 31
based on GenBank Accession No. AJ004801.1))




 


Us9
P11 (For)
atggagagtccacgcagcgtcgtc (NT 1835-1858, FIG. 4;
WT: 550 bp




SEQ ID
based on GenBank Accession No. AJ004801.1))
Mutant:




NO: 32

negative




P12 (Rev)
gaagacaggcgcgggcgtgcgga (complementary to NT





SEQ ID
2369-2391, FIG. 4; based on GenBank Accession





NO: 33
No. AJ004801.1))









Example 12
In Vivo Characterization of the Virus in Rabbits and in Calves: Determination of In Vivo Intra Nasal Replication/Shedding Property in Rabbit and Determination of SN Titers and Serological Marker Properties in Rabbits Infected with the Mutant Virus Relative to the Wild-Type BHV-1
Two groups of rabbits, containing 5 rabbits in each group, were either infected intranasally with the wild-type BHV-1 or with the recombinant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus. Nasal virus replication was investigated by standard plaque assay of nasal swabs collected during primary infection (for 8-10 days post infection), as discussed above. FIG. 30 illustrates the results of an analysis of nasal virus shedding in rabbits either infected with BHV-1 wt virus or infected with BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus at the indicated intervals (days post infection (dpi)). The data represent an average of five rabbits in each treatment group. This data show that the mutant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus replicated in the nasal epithelium with the efficiency of the wild-type virus.
Sera from rabbits infected either with WT BHV-1 or recombinant BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viruses will be tested by immunoblotting/ELISA for differential marker properties of the mutant virus. We expect that sera from rabbits infected with the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ viruses would not react to BHV-1 gE cytoplasmic tail-expressing MDBK cell lysates while the sera from rabbits infected with WT BHV-1 would react.
In addition, the BHV-1 UL49.5Δ30-32 CT-null/gE CTΔ/Us9Δ virus will be tested in calves using the procedure similar to that used to test the BHV-1 UL49.5Δ30-32 CT-null virus as described above in Examples 7 and 9. It is expected that this virus will be a better vaccine than the BHV-1 UL49.5Δ30-32 CT-null virus since the new virus has been shown to replicate well, but it will not reactivate and thus is less virulent, and will not suppress the host immune response. Other combinations of mutations in these three genes will be tested similarly to that described above.
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The complete disclosures of all references cited in this specification are hereby incorporated by reference. Also incorporated by reference is the complete disclosure of Huiyoung Wei, Ying Wang, and S. I. Chowdhury, “Bovine herpesvirus type 1 (BHV-1) UL49.5 luminal domain residues 30 to 32 are critical for MHC-1 down-regulation in virus-infected cells,” PLoS ONE, vol. 6(10):e25742, Oct. 26, 2011. In the event of an otherwise irreconcilable conflict, however, the present specification shall control.

## Claims

1. A bovine herpesvirus-1 (BHV-1) mutant virus comprising at least two deletion mutations, wherein the gene encoding UL49.5 (glycoprotein N) is only mutated by deleting nucleotides encoding amino acid residues 30 to 32 and 80 to 96 according to SEQ ID NO: 34.

2. The BHV-1 mutant virus of claim 1, further comprising one or more mutations in one or more genes selected from the group consisting of the gene encoding glycoprotein E and the gene encoding envelope protein Us9.

3. The BHV-1 mutant virus of claim 1, further comprising a deletion in the cytoplasmic tail region of the gene encoding glycoprotein E.

4. The BHV-1 mutant virus of claim 1, further comprising one or more deletions in the gene encoding the envelope protein Us9; wherein at least one said deletion is selected from the group consisting of the deletion of the entire Us9 gene; and a deletion of nucleotides of the Us9 gene encoding residues of the acidic region of the cytoplasmic tail region, said nucleotides encoding residues of the acidic region of the cytoplasmic tail region being nucleotides corresponding to those numbered from about 2068 to about 2128 in SEQ ID NO:42.

5. The BHV-1 mutant virus of claim 4, wherein said one or more deletions comprise a deletion of the nucleotides corresponding to those numbered from about 2081 to about 2104 in SEQ ID NO:42.

6. The BHV-1 mutant virus of claim 1, further comprising one or more deletions in the gene encoding envelope protein Us9, wherein said one or more deletions cause a truncation of all or part of the residues of the cytoplasmic tail region of Us9.

7. A bovine herpesvirus-1 (BHV-1) mutant virus, wherein said mutant virus contains at least three deletion mutations: wherein the first said deletion mutation comprises only one mutation in the gene that encodes UL49.5, wherein said mutation is the deletion of only the nucleotides that encode the UL49.5 amino acid residues numbered from 30 to 32 according to SEQ ID NO:34, wherein the second said deletion mutation is that the nucleotides are deleted that encode at least part of the cytoplasmic tail region of glycoprotein E, and wherein the third said deletion mutation is selected from the group consisting of the deletion of all nucleotides that encode for envelope protein Us9 or deletion of nucleotides 2068 to 2128 according to SEQ ID NO:42 which encode for amino acids 83-90 of Us9.

8. A live attenuated vaccine for protection against BHV-1 infection comprising the BHV-1 mutant virus of claim 1 or claim 7.

9. A vaccine composition, comprising the vaccine of claim 8 and a pharmaceutically acceptable vehicle or adjuvant.

10. A method of immunizing cattle against a BHV-1 infection, said method comprising inoculating the cattle with the vaccine of claim 8.

11. A vector comprising the BHV-1 mutant virus of claim 1 or claim 7 and one or more exogenous genes.