# Patent

## Title
Gene encoding cyclododecanone monooxygenase

## Abstract

The invention relates to a new strain of Pseudomonas putida (designated as HI-70) and to the isolation, cloning, and sequencing of a cyclododecanone monooxygenase-encoding gene (named cdnB) from said strain. The invention also relates to a new cyclododecanone monooxygenase and to a method of use of the cyclododecanone monooxygenase-encoding gene.

## Background
CROSS-REFERENCE TO RELATED APPLICATIONS
This application is a U.S. National Phase Entry under 35 U.S.C. § 371 of co-pending International Application No. PCT/CA02/01434 filed on Sep. 18, 2002, which designates the U.S. and which claims the benefit under 35 U.S.C. § 119(e) to U.S. provisional application Ser. No. 60/323,129 filed on Sep. 19, 2001.
BACKGROUND OF THE INVENTION
(a) Field of the Invention
The invention relates to a new strain of Pseudomonas putida (designated as HI-70) and to the isolation, cloning, and sequencing of a cyclododecanone monooxygenase-encoding gene (named cdnB) from said strain.
(b) Description of Prior Art
Enzymatic Baeyer-Villiger monooxygenases (BVMO) in general are flavoproteins that can mimic the classical (100-year old) organic Baeyer-Villiger oxidations of a wide variety of ketones to lactones, many of which are valuable chiral building blocks. The deployment of microbial BVMOs in the synthesis of natural products such as lipoic acid and Baclofen, an antagonist of gamma-aminobutyric acid (better known as GABA) demonstrates the power and utility of this group of enzymes (Kelly, D. R. et al. 1998 in Biotransformation I, pp. 535–587). The use of enzymes as bio-reagents has the advantages of specificity, waste minimization and environmental friendliness. In a world where sustainable development is an increasing important issue, the use of biocatalysts to drive synthesis of essential products in various industrial applications is becoming a matter of priority choice for the Organisation For Economic Co-Operation And Development (OECD).
To date, there is a limited list of microorganisms (bacteria and fungi) that have been shown to produce BVMOs (Stewart, J. D. Curr. Org. Chem. 2:195–216, 1998; Kelly et al. supra; Schumacher J. D. and Fakoussa, R. M. Appl. Microbiol. Biotechnol. 52: 85–90, 1999; Kamerbeek, N. M. et al. Eur. J. Biochem. 268:2547–2557, 2001). A few BVMO-encoding genes have been cloned encoding products with varying substrate specificities (Iwaki, H. et al. Appl. Environ. Microbiol. 65:5158–5162, 1999; Cheng, Q. et al. J. Bacteriol. 182:4744–4751, 2000; Brzostowicz P. C. et al. J. Bacteriol. 182: 4241–4248, 2000; Kamerbeek, N. M. et al. Eur. J. Biochem. 268:2547–2557, 2001).
It would be highly desirable to be provided with a new soil microorganism capable of using cyclododecanol and cyclododecanone (12-membered ring compounds) as sole carbon source for growth and energy.
It would also be desirable to be provided with the isolated DNA sequence that allows the above microorganism to use cyclododecanol and cyclododecanone (12-membered ring compounds) as sole carbon source for growth and energy.
SUMMARY OF THE INVENTION
One aim of the present invention is to provide a new soil microorganism capable of using cyclododecanol and cyclododecanone (12-membered ring compounds) as sole carbon source for growth and energy.
Another aim of the present invention is to provide the isolated DNA sequence that allows the above microorganism to use cyclododecanol and cyclododecanone (12-membered ring compounds) as sole carbon source for growth and energy. In the present invention, it was found that the DNA that allows the above microorganism to use cyclododecanol and cyclododecanone (12-membered ring compounds) as sole carbon source for growth and energy is a cyclododecanone monooxygenase.
Accordingly, another aim of the present invention is to provide the amino acid sequence of the cyclododecanone monooxygenase.
In accordance with the present invention, there is provided a new soil microorganism, identified as Pseudomonas putida strain HI-70, that is capable of using cyclododecanol and cyclododecanone (12-membered ring compounds) as sole carbon source for growth and energy. The microorganism has a gene coding for a cyclododecanone monooxygenase. To date, it is believed that the cloned cdnB gene encoding the cyclododecanone monooxygenase (CDMO) of strain HI-70 is the first of its kind by sequence and substrate specificity towards cycloketones with ten ring members or above. Also, over-expression of the cdnB gene in E. coli provides a rich source of this recombinant enzyme for use in various biotransformations.
In accordance with the present invention there is also provided an isolated DNA encoding a cyclododecanone monooxygenase (CDMO) having an amino acid sequence as set forth in SEQ ID NO:8, or an enzymatically active portion thereof.
Further in accordance with the present invention, there is provided an isolated DNA encoding a cyclododecanone monooxygenase (CDMO) or an enzymatically active portion thereof, the isolated DNA being characterized by the ability to hybridize specifically with the complement of the DNA represented in SEQ ID NO:7 under stringent hybridization conditions.
In one embodiment of the invention, there is provided an isolated DNA coding for a cyclododecanone monooxygenase (CDMO), and containing:

    
    
        (a) a nucleic acid sequence as set forth in SEQ ID NO:7;
        (b) a sequence corresponding within the degeneracy of the genetic code to said nucleic acid sequence and coding for a cyclododecanone monooxygenase; or
        (c) a sequence hybridizing under stringent conditions with the complement of the sequence from (a) or (b), and still coding for cyclododecanone monooxygenase (CDMO).
    
    


The present invention further provides an isolated DNA encoding a cyclododecanone monooxygenase (CDMO), or an enzymatically active portion thereof, said isolated DNA having SEQ ID NO:7.
In one embodiment of the present invention, the enzymatically active cyclododecanone monooxygenase (CDMO) of the present invention can be encoded by an expression vector that comprises a DNA as defined above. The expression vector may comprises one or more copies of the DNA that codes for the enzymatically active cyclododecanone monooxygenase (CDMO). The expression vector may either be a prokaryotic or eukaryotic vector. The vector may in some embodiments as well be a plasmid, which plasmid may then be used to transformed host cells or to be incorporated into these host cells.
Accordingly, the present invention further provides a biologically functional plasmid or viral DNA vector that contains a DNA as defined above.
Still in accordance with the present invention, there is also provided a cell transformed with a heterologous DNA expression construct encoding an enzymatically active cyclododecanone monooxygenase (CDMO), said construct comprising an isolated DNA as defined in any one of claims 1 to 5, said cell once transformed expressing said CDMO. The cell may be a prokaryotic cell. The cell may also be an E. coli cell.
Further in accordance with the present invention, there is provided a cyclododecanone monooxygenase (CDMO) having an amino acid sequence as set forth in SEQ ID NO:8.
Still in accordance with the present invention, there is also provided a method for growing cells in vitro in presence of cyclododecanol or cyclododecanone as sole source of carbon, said method comprising the steps of:

    
    
        (a) transforming a cell with either an expression vector as defined in claim 6, 7, 8 or 9 or with a biologically functional plasmid or viral DNA vector as defined in claim 10; and
        (b) growing the cell of step a) under suitable conditions in a medium containing cyclopentanol or cyclododecanone as a sole source of carbon.
    
    





BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 illustrates a genetic map of a clone containing the 4.2-kb Bc/I and 4.0-kb StuI inserts was screened by colony hybridization using the PCR product as a probe;
FIG. 2 is a photograph of a Coomassie Brilliant Blue stained protein gel after polyacrylamide gel electrophoresis of over-expressed CDMO in E coli compared to control samples and a molecular size standard; and
FIG. 3 illustrates a Five-step chemical synthesis of hexadecanolides versus a single step CDMO-catalysed reaction.



DETAILED DESCRIPTION OF THE INVENTION
In accordance with the present invention, there is described the isolation of a new strain of Pseudomonas putida (designated as strain HI-70) that is capable of utilising cyclododecanone or cyclododecanol as a sole carbon source, the cloning and sequencing of a cyclododecanone monooxygenase-encoding gene (named cdnB) from said strain, the expression of said cdnB gene in a heterologous system (E. coli), and activity assays of the said enzyme. The specificity spectrum and utility of the CDMO of the present invention for the oxidation of large ring-membered moncyclic ketones (with at least 10, preferably 12 or more rings) to lactones, something that no other enzymes are known to do, was determined with these assays.
Isolation of a New Strain of Pseudomonas putida Encoding a Cyclododecanone Monooxygenase (CDMO)
An organism was isolated from a soil sample from Osaka, Japan by selective enrichment by using a minimal salts medium (MSM), pH 7.0, containing cyclododecanone (1.0 g per liter). It was maintained on either liquid or solid minimal salts medium containing cyclododecanone as the sole carbon source. MSM contained (per liter of distilled water) 1.0 g of NH4NO3, 1.5 g of KH2PO4, 1.5 g of Na2HPO4, 0.5 g of MgSO4. 7H2O, 0.01 g of CaCl22H2O. 0.005 g of FeSO4. 7H2O, 0.002 g of MnSO4. 4H2O and 0.05 g of ZnSO4. 7H2O. The isolate was identified and classified as a member of P. putida by NCIMB Japan Co. Ltd. (Shizuoka, Japan). This strain was designated strain HI-70.
Cloning of the Pseudomonas putida HI-70 CDMO-Encoding Gene
Pseudomonas putida HI-70 was grown at 30° C. in Luria-Bertani (LB) broth, or minimal salt medium (MSM), pH 7.0, containing 0.3% of cyclododecanone. Agar was added to 1.5% per plate. Genomic DNA of strain HI-70 was prepared by the Marmur method. Based on two conserved regions (WY/HWNR/CYP (SEQ ID NO:1 and ATGFDA (SEQ ID NO:2)) of BVMOs (CHMO of Acinetobacter sp. NCIMB 9871, CPMO of Comamonas testosteroni NCIMB9872, CHMO of Rhodococcus maris HI-31 and STMO of Rhodococcus rhodochrous IFO 3338), two degenerated PCR primers (5′-TGGYAYTGGMYHGITAYCC-3′ (SEQ ID NO:3) and 5′-GCRTCRAANCCNGTIGC-3′ (SEQ ID NO:4), corresponding to amino acids of Acinetobacter CHMO 46–52 and 377–382, respectively; I=inosine; N=T,C,A or G; R=A or G; Y=C or T; H=A,C or T) were synthesized to amplify a ca 1-kb product from total DNA prepared from strain HI-70.
The PCR amplification was performed in a Perkin Elmer-Model 2400 Thermal CyclerTM and the amplification conditions were 94° C. for 1 min, 50° C. for 1 min, and 72° C. for 2 min, for 30 cycles. Before using the amplified product as a gene probe its nucleotide sequence was confirmed. Nucleotide sequencing was determined by the Taq DyeDeoxy terminator cycle sequencing kit and the ABI Prism 310 Genetic Analyzer (Perkin Elmer).
The two special sets of primers were designed for the first time ever for use in a PCR amplification of a potential BVMO-encoding gene. This strategy took advantage of the fact that blocks of conserved amino acid sequence among proteins of evolutionary distinct origins but with a common biological activity or function would be an invaluable source of information for gene cloning. The successful cloning of cdnB described in the present application validates this approach. The amplified gene productgenerated by each of the two sets of primers were used as probes. This designed set of probes is expected to be useful for the cloning of any other BVMO-related genes.
To clone the CDMO-containing gene, amplified fragment was labeled by the digoxigenin-11-UTP system according to manufacturer's instructions (Boehringer Mannheim GmbH) and used to probe a Southern hybridization of strain HI-70 genomic DNA digested with various restriction enzymes (BamHI, Bc/I, EcoRI, HindIII, KpnI, NheI, PstI, SalI, SphI, StuI and XbaI). As a result, a single hybridizing band of ca 4.2-kb BclI fragment and 4.0-kb StuI fragment was obtained. Hybridization conditions were carried out at 68° C. according to Sambrook et al. under the following high stringency conditions: a one hour wash in 0.2×standard sodium citrate (SSC) solution containing 0.1% sodium dodecyl sulfate (SDS) at 68° C. Subsequently, a purified 3.5- to 4.5 kb size fraction of BclI or StuI-cut total DNA separated on a 0.8% agarose gel was ligated to E. coli plasmid pUC19, which had been linearized and dephosphorylated.
A clone containing the 4.2-kb Bc/I and 4.0-kb StuI inserts was screened by colony hybridization using the PCR product as a probe; these recombinant plasmids were designated pCD200 (4.2-kb BclI) and pCD100 (4.0-kb StuI). A genetic map is illustrated in FIG. 1 has been established.
Expression of cdnB Gene in E. coli 
Two primers of the following sequence (SEQ ID NO:5 and SEQ ID NO:6) were synthesized to amplify the cdnB gene and the resultant 1.8-kb DNA fragment was cloned in the pSD80 plasmid to yield pCD101. Plasmid pSD80 is a third generation derivative of the commercially available pKK223-3 vector (Pharmacia) that contains a tac promoter upstream of the multiple cloning site (MCS), an unc terminator sequence downstream of the MCS, and lacIq elsewhere on the plasmid. The primers were: 5′-CGGMTTCATGAGTCAGCTAATTCMGAGC-3′ (SEQ ID NO:5) and 5′ CGGMTTCAATCMCGCTTGCGCTGCTG-3′ (SEQ ID NO:6) with built-in EcoRI restriction sites, to facilitate cloning at the compatible sites (EcoRI) of the pSD80 vector. Pfu polymerase was used and the amplification conditions were 94° C. for 1 min, 50° C. for 1 min, and 72° C. for 3 min, for 30 cycles. The amplified DNA fragment was purified from an agarose gel and digested with EcoRI.
One of the resulting recombinant plasmids was designated pCD101. By DNA sequencing, it was established that no mutation had been introduced in the cdnB gene during PCR amplification.
The DNA sequence of the cdnB gene was determined to be as follows:








(SEQ ID NO:7)










atgagtcagc taattcaaga gccggccgag gctggggtaa cgtcgcagaa agtttccttc
60



 


gatcatgtgg cgcttcgcga aaaatatcgt caggagcgcg acaagcgctt gcgtcaggac
120


 


ggccaagagc aatatctgga agtcgccgtc acatgtgacg aatacctgaa agacccctat
180


 


gccgatccga tcgtgcgtga tccggtggtg cgcgagaccg acgtgttcat catcggtggc
240


 


ggtttcggtg gtctgttggc tgcggtacgc ctgcagcaag caggcgttag cgattatgtg
300


 


atggttgagc gcgccggtga ctatggcggc acctggtact ggaaccgcta cccgggggcg
360


 


cagtgcgaca tcgagtcgta tgtctacatg cccttgctcg aagaaatggg ttacataccg
420


 


accgagaagt acgccttcgg tacggagatc ctcgagtact ccagatcaat cggccgcaaa
480


 


tttggcttgt acgagcgcac ctacttccag actgaagtga aggatctgag ctgggacgat
540


 


gaagcggccc gctggcgcat taccaccgac cgcggcgaca agttcagcgc gcgcttcgtg
600


 


tgcatgtcca ccggcccctt gcagcggccc aaactgcccg gcatcccagg tatcacgtcc
660


 


ttcaagggcc actccttcca caccagtcgc tgggactact cctataccgg cggcgatcag
720


 


accggcaacc tggaaggttt gaaagacaag cgcgtggcca tcatcggtac cggcgccacc
780


 


tcaatccagg ctgtgccaca cctggcggcc tatgcccaag agctgtatgt catccagcgc
840


 


acgccaattt ccgtgggctt ccgtggcaac aagccgactg atcctgaatg ggccaagagc
900


 


ctgcagccgg gttggcagca agcgcgtatg gacaacttca atgcgatcac ccacggcatg
960


 


ccggtcgatg tcgatctggt ccaggacagc tggaccaaga tcttcggcga aatcggcgtt
1020


 


tttctgggtt ccgatggcag ccgtgcgcag atggtcgact tccagttgat ggagcaaatc
1080


 


cgcgcccgcg tcgatcagga agtcaaggat ccggccaccg ctgagtcgct caagccttac
1140


 


tacaacatca tgtgtaagcg tccgggcttc catgacagtt atctgccctc cttcaacaag
1200


 


cccaatgtca ccctggtcga tacccaaggc gctggtgttg agcgcatcac cgaaaagggc
1260


 


ctggtggtca acggccgcga atatgaagtc gactgcctga tctacgccac cggcttcgag
1320


 


taccagacca agttgtcgcg ccgcaatggc tacgaaatcc acgggcgcaa tggccagccg
1380


 


ctgagtgaca agtggaaaga cggcctgtcc acactgtggg gctaccacat tcgtgacttc
1440


 


ccgaactgct tcatccttgg caatggtcag tctgcggtaa caccgaactt cactcacatg
1500


 


ctcaacgaag ctggcaagca tgtggcctat gtggtcaagc actgcctgga cgagcgcgtc
1560


 


gatgtcttcg agccgaccgc agaggctgag caggcgtggg ttgaccacgt catgtcgttc
1620


 


gctgggatca agcagcaata cgaccgcgag tgcaccccga gttactacaa caacgaaggc
1680


 


caggtgaacg acgttgcgct gacccgcaca acttctaccc gggcggtgcg gtcgcttata
1740


 


aacattctgc gggagtggcg agagaagggc gatttcgcgc agttccagca gcgcaagcgt
1800


 


tga
1803






From the above sequence, the amino acid sequence of the CDMO of the present invention was determined to be as follows:








(SEQ ID NO:8)









Met Ser Gln Leu Ile Gln Glu Pro Ala Glu Ala Gly Val Thr Ser Gln



 1               5                  10                  15


 


Lys Val Ser Phe Asp His Val Ala Leu Arg Glu Lys Tyr Arg Gln Glu


            20                  25                  30


 


Arg Asp Lys Arg Leu Arg Gln Asp Gly Gln Glu Gln Tyr Leu Glu Val


        35                  40                  45


 


Ala Val Thr Cys Asp Glu Tyr Leu Lys Asp Pro Tyr Ala Asp Pro Ile


    50                  55                  60


 


Val Arg Asp Pro Val Val Arg Glu Thr Asp Val Phe Ile Ile Gly Gly


65                  70                  75                  80


 


Gly Phe Gly Gly Leu Leu Ala Ala Val Arg Leu Gln Gln Ala Gly Val


                85                  90                  95


 


Ser Asp Tyr Val Met Val Glu Arg Ala Gly Asp Tyr Gly Gly Thr Trp


            100                 105                 110


 


Tyr Trp Asn Arg Tyr Pro Gly Ala Gln Cys Asp Ile Glu Ser Tyr Val


        115                 120                 125


 


Tyr Met Pro Leu Leu Glu Glu Met Gly Tyr Ile Pro Thr Glu Lys Tyr


    130                 135                 140


 


Ala Phe Gly Thr Glu Ile Leu Glu Tyr Ser Arg Ser Ile Gly Arg Lys


145                 150                 155                 160


 


Phe Gly Leu Tyr Glu Arg Thr Tyr Phe Gln Thr Glu Val Lye Asp Leu


                165                 170                 175


 


Ser Trp Asp Asp Glu Ala Ala Arg Trp Arg Ile Thr Thr Asp Arg Gly


            180                 185                 190


 


Asp Lys Phe Ser Ala Arg Phe Val Cys Met Ser Thr Gly Pro Leu Gln


        195                 200                 205


 


Arg Pro Lys Leu Pro Gly Ile Pro Gly Ile Thr Ser Phe Lys Gly His


    210                 215                 220


 


Ser Phe His Thr Ser Arg Trp Asp Tyr Ser Tyr Thr Gly Gly Asp Gln


225                 230                 235                 240


 


Thr Gly Asn Leu Glu Gly Leu Lys Asp Lys Arg Val Ala Ile Ile Gly


                245                 250                 255


 


Thr Gly Ala Thr Ser Ile Gln Ala Val Pro His Leu Ala Ala Tyr Ala


            260                 265                 270


 


Gln Glu Leu Tyr Val Ile Gln Arg Thr Pro Ile Ser Val Gly Phe Arg


        275                 280                 285


 


Gly Asn Lys Pro Thr Asp Pro Glu Trp Ala Lye Ser Leu Gln Pro Gly


    290                 295                 300


 


Trp Gln Gln Ala Arg Met Asp Asn Phe Asn Ala Ile Thr His Gly Met


305                 310                 315                 320


 


Pro Val Asp Val Asp Leu Val Gln Asp Ser Trp Thr Lys Ile Phe Gly


                325                 330                 335


 


Glu Ile Gly Val Phe Leu Gly Ser Asp Gly Ser Arg Ala Gln Met Val


            340                 345                 350


 


Asp Phe Gln Leu Met Glu Gln Ile Arg Ala Arg Val Asp Gln Glu Val


        355                 360                 365


 


Lys Asp Pro Ala Thr Ala Glu Ser Leu Lys Pro Tyr Tyr Asn Ile Met


    370                 375                 380


 


Cys Lys Arg Pro Gly Phe His Asp Ser Tyr Leu Pro Ser Phe Asn Lys


385                 390                 395                 400


 


Pro Asn Val Thr Leu Val Asp Thr Gln Gly Ala Gly Val Glu Arg Ile


                405                 410                 415


 


Thr Glu Lys Gly Leu Val Val Asn Gly Arg Glu Tyr Glu Val Asp Cys


            420                 425                 430


 


Leu Ile Tyr Ala Thr Gly Phe Glu Tyr Gln Thr Lys Leu Ser Arg Arg


        435                 440                 445


 


Asn Gly Tyr Glu Ile His Gly Arg Asn Gly Gln Pro Leu Ser Asp Lys


    450                 455                 460


 


Trp Lys Asp Gly Leu Ser Thr Leu Trp Gly Tyr His Ile Arg Asp Phe


465                 470                 475                 480


 


Pro Asn Cys Phe Ile Leu Gly Asn Gly Gln Ser Ala Val Thr Pro Asn


                485                 490                 495


 


Phe Thr His Met Leu Asn Glu Ala Gly Lys His Val Ala Tyr Val Val


            500                 505                 510


 


Lys His Cys Leu Asp Glu Arg Val Asp Val Phe Glu Pro Thr Ala Glu


        515                 520                 525


 


Ala Glu Gln Ala Trp Val Asp His Val Met Ser Phe Ala Gly Ile Lys


    530                 535                 540


 


Gln Gln Tyr Asp Arg Glu Cys Thr Pro Ser Tyr Tyr Asn Asn Glu Gly


545                 550                 555                 560


 


Gln Val Asn Asp Val Ala Leu Thr Arg Thr Thr Ser Thr Arg Ala Val


                565                 570                 575


 


Arg Ser Leu Ile Asn Ile Leu Arg Glu Trp Arg Glu Lys Gly Asp Phe


            580                 585                 590


 


Ala Gln Phe Gln Gln Arg Lys Arg


        595                 600






The cdnB gene encodes a 600-amino acid residue with an experimentally-determined molecular mass of 66 KDa (FIG. 2).
A notable sequence motif present in CDMO and related proteins is the FAD-binding fingerprint (GXGXXG;) that is similar to those found in flavoprotein hydroxylases.
Comparison of CDMO Activity in E. coli and Native HI-70
The CDMO activity from E. coli DH5α(pSD-cdnB) was determined to be 0.48 U/mg of protein. This value is approximately three times the value (0.14 U/mg of protein) obtained for the original P. putida strain HI-70.
Substrate Specificity of Cloned CDMO:


    cyclododecanone (relative activity of 100%)
    cyclotridecanone (138%)
    cyclopentadecanone (144%)
    cycloundecanone (56%)
    cyclodecanone (10%)


The activity of CDMO towards alicyclic ketones with small ring members (4 to 9) is relatively insignificant or not detectable. The substrate specificity of the cloned CDMO is identical to that of the native CDMO from P. putida strain HI-70.
The specificity spectrum of CDMO towards cyclo-compounds with at least 10-membered rings is a feature that distinguishes this enzyme from any other known BVMOs.
Utility of CDMO Recombinant Biocatalyst in the Industrial Sector
Besides the conventional ketone to lactone biotransformations, BVMOs in general are capable of several heteroatom oxidations. These reactions include sulfo-oxidation, phospho-oxidation, amine oxidation, boron oxidation and seleno-oxidation (Kelly et al. supra; Stewart, supra). For example, the use of BVMOs to perform sulfo-oxidations (sulfides to sulfoxides) has been of considerable interest due to the importance of sulfoxides as chiral auxiliaries in asymmetric synthesis.
In addition to the above-mentioned substrates, the substrate range of CDMO is expected to extend to heteroatom containing compounds. Of particular interest is the production of 15-hexadecanolide, a sex pheromone component of the stink bug, Piezodorus hybneri (Kuwahara et al. supra). The latter bug is a notorious pest of legumes such as soybeans and kidney beans. Thus far, 15-hexadecanolide can be synthesized chemically using the Yamaguchi or Mitsunobu inacrolactonization reaction of (R)-15-hydroxyhexadecanoic acid prepared from ethyl (R)beta-hydroxybutyrate in five steps (FIG. 3; Kuwahara et al. supra). A CDMO-catalyzed single reaction step would avoid the use of various solvents and chemicals that are either toxic or “atom-uneconomical”, i.e. wasteful. See the comparison in FIG. 3.
Large ring-membered compounds such as cyclododecanone have been described to resemble structures in coal. The bigger the carbon ring, the more flexible it is (remember boat and chair conformations of a cyclic alkane) and more it can take a conformation like that of an open-chain alkane. Specificity of CDMO towards big rings indicate its potential for catalysing attack on aliphatic bridge structures such as those found in coal to generate further value-added products.
The new Pseudomonas putida strain HI-70 of the present invention has been deposited at the International Depositary Authority of Canada (National Microbiology Laboratory, Health Canada, Canadian Science Centre for Human and Animal Health, 1015 Arlington St., Suite H3130, Winnipeg, MB R3E 3R2) on Sep. 18, 2002 and was given accession number IDAC-180902.
While the invention has been described in connection with specific embodiments thereof, it will be understood that it is capable of further modifications and this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains and as may be applied to the essential features hereinbefore set forth, and as follows in the scope of the appended claims.

## Claims

1. An isolated DNA encoding a cyclododecanone monooxygenase (CDMO) having an amino acid sequence as set forth in SEQ ID NO:8, or an enzymatically active portion thereof.

2. An isolated DNA encoding cyclododecanone monooxygenase (CDMO) or an enzymatically active portion thereof, the isolated DNA being characterized by the ability to hybridize specifically with the comptement of the DNA represented in SEQ ID NO:7 under high stringency hybridization conditions wherein the high stringency hybridization conditions comprises a one hour wash in 0.2× standard sodium citrate (SSC) solution containing 0.1% sodium dodecyl sulfate (SDS) at 68° C.

3. An isolated DNA encoding a cyclododecanone monooxygenase (CDMO), and containing:
(a) a nucleic acid sequence as set forth in SEQ ID NO:7;
(b) a sequence corresponding within the degeneracy of the genetic code to said nucleic acid sequence and coding for a cyclododecanone monooxygenase; or
(C) a sequence hybridizing under high stringency conditions with the complement of the sequence from (a) or (b), and still coding for cyclododecanone monooxygenase (CDMO) wherein the high stringency hybridization conditions comprises a one hour wash in 0.2× standard sodium citrate (SSC) solution containing 0.1% sodium dodecyl sulfate (SDS) at 68° C.

4. An isolated DNA encoding a cyctododecanone monooxygenase (CDMO) having a nucleotide sequence as set forth in SEQ ID NO: 7, or a fragment thereof encoding an enzymatically active portion of said CDMO.

5. The isolated DNA as defined in claim 1, wherein said DNA is isolated from Pseudomonas putida.

6. An expression vector encoding an enzymatically active cyclododecanone monooxygenase (CDMO) comprising a DNA as defined in claim 1.

7. The expression vector as defined in claim 6, wherein said vector contains one or more copies of said DNA.

8. The expression vector as defined in claim 6, wherein said vector is a prokaryotic vector.

9. The expression vector as defined in claim 6, wherein said vector is a plasmid.

10. A plasmid or viral DNA vector, which contains a DNA as defined in claim 1.

11. An isolated host cell comprising an expression vector as defined in claim 6.

12. An isolated cell transformed with a heterologous DNA expression construct encoding an enzymatically active cyclododecanone monooxygenase (CDMO), said construct comprising an isolated DNA as defined in claim 1, said cell once transformed expressing said CDMO.

13. The cell as defined in claim 12, which is a prokaryotic cell.

14. The cell as defined in claim 12, which is E. coli.

15. The isolated DNA as defined in claim 2, wherein said DNA is isolated from Pseudomonas putida.

16. An expression vector encoding an enzymatically active cyclododecanone monooxygenase (CDMO) comprising a DNA as defined in claim 2.

17. The expression vector as defined in claim 16, wherein said vector contains one or more copies of said DNA.

18. The expression vector as defined in claim 16, wherein said vector is a prokaryotic vector.

19. The expression vector as defined in claim 16, wherein said vector is a plasmid.

20. A biologically functional plasmid or viral DNA vector, which contains a DNA as defined in claim 2.

21. An isolated host cell comprising an expression vector as defined in claim 16.

22. An isolated cell transformed with a heterologous DNA expression construct encoding an enzymatically active cyclododecanone monooxygenase (CDMO), said construct comprising an isolated DNA as defined in claim 2, said cell once transformed expressing said CDMO.

23. The cell as defined in claim 22, which is a prokaryotic cell.

24. The cell as defined in claim 22, which is E. coli.

25. The isolated DNA as defined in claim 3, wherein said DNA is isolated from Pseudomonas putida.

26. An expression vector encoding an enzymatically active cyclododecanone monooxygenase (CDMO) compilsing a DNA as defined in claim 3.

27. The expression vector as defined in claim 26, wherein said vector contains one or more copies of said DNA.

28. The expression vector as defined in claim 26, wherein said vector is a prokaryotic vector.

29. The expression vector as defined in claim 26, wherein said vector is a plasmid.

30. A biologically functional plasmid or viral DNA vector, which contains a DNA as defined in claim 3.

31. An isolated host cell comprising an expression vector as defined in claim 26.

32. An isolated cell transformed with a heterologous DNA expression construct encoding an enzymatically active cyclododecanone monooxygenase (CDMO), said construct comprising an isolated DNA as defined in claim 3, said cell once transformed expressing said CDMO.

33. The cell as defined in claim 32, which is a prokaryotic cell.

34. The cell as defined in claim 32, which is E. coli.

35. The isolated DNA as defined in claim 4, wherein said DNA is isolated from Pseudomonas putida.

36. An expression vector encoding an enzymatically active cyclododecanone monooxygenase (CDMO) comprising a DNA as defined in claim 4.

37. The expression vector as defined in daim 36, wherein said vector contains one or more copies of said DNA.

38. The expression vector as defined in claim 36, wherein said vector is a prokaryotic vector.

39. The expression vector as defined in claim 36, wherein said vector is a plasmid.

40. A biologically functional plasmid or viral DNA vector, which contains a DNA as defined in claim 4.

41. An isolated host cell comprising an expression vector as defined in claim 36.

42. An isolated cell transformed with a heterologous DNA expression construct encoding an enzymatically active cyclododecanone monooxygenase (CDMO), said construct comprising an isolated DNA as defined in claim 4, said cell once transformed expressing said CDMO.

43. The cell as defined in claim 42, which is a prokaryotic cell.

44. The cell as defined in claim 42, which is E. coli.