# Patent

## Title
4-aminopyrimidine-5-thione derivatives

## Abstract

Novel 4-aminopyrimidine-5-thione derivatives are disclosed. These compounds inhibit cyclin-dependent kinases, in particular Cdk1, Cdk2 and Cdk4. These compounds and their pharmaceutically acceptable salts have antiproliferative activity and are useful in the treatment or control of cancer, in particular solid tumors. This invention is also directed to pharmaceutical compositions containing such compounds and to methods of treating or controlling cancer, most particularly the treatment or control of breast, lung, colon and prostate tumors.

## Background
PRIORITY TO RELATED APPLICATIONS
This application claims the benefit of U.S. Provisional Application No. 60/738,915, filed Nov. 22, 2005, which is hereby incorporated by reference in its entirety.


FIELD OF THE INVENTION
The present invention relates to novel 4-aminopyrimidine-5-thione derivatives that inhibit cyclin-dependent kinases. These compounds and their pharmaceutically acceptable salts have antiproliferative activity and are useful, inter alia, in the treatment or control of cancer, in particular solid tumors. This invention also relates to pharmaceutical compositions containing such compounds and to methods of treating or controlling cancer, most particularly the treatment or control of breast, lung, colon and prostate tumors.
BACKGROUND OF THE INVENTION
Uncontrolled cell proliferation is the hallmark of cancer. Cancerous tumor cells typically have some form of damage to the genes that directly or indirectly regulate the cell-division cycle.
The progression of cells through the various phases of the cell cycle is regulated by a series of multienzyme complexes consisting of a regulatory protein, a cyclin, and a kinase. These kinases are called cyclin-dependent kinases (Cdks). The Cdks are expressed throughout the cell cycle, while the levels of the cyclins vary depending on the stage of the cell cycle.
The four primary phases of cell cycle control are generally describes as G1, S, G2, and M. Some essential enzymes for cell cycle control appear to be cyclin D/Cdk4, cyclin D/Cdk6, cyclin E/Cdk2, cyclin A/Cdk2, and cyclin B/Cdk1 (also known as Cdc2/cyclin B). Cyclin D/Cdk4, cyclin D/Cdk6, and cyclin E/Cdk2 control passage through the G1-phase and the G1- to S-phase transition by phosphorylation of the retinoblastoma phosphoprotein, pRb. Cyclin A/Cdk2 regulates passage through the S-phase, and cyclin B/Cdk1 controls the G2 checkpoint and regulates entry into M (mitosis) phase.
The cell cycle progression is regulated by Cdk1 (cdc2) and Cdk2 beyond early G1 when cells are committed to cytokinesis. Therefore, drug inhibition of these Cdks is likely not only to arrest cell proliferation, but also to trigger apoptotic cell death. Once the cells pass the G1 restriction point and are committed to S phase, they become independent of growth factor stimulation for continued cell cycle progression.
Following completion of DNA replication, cells enter the G2 phase of the cell cycle in preparation for M phase and cytokinesis. Cdk1 has been shown to regulate passage of cells through these later phases of the cell cycle in association with both cyclins A and B. Complete activation of Cdk1 requires both cyclin binding and specific phosphorylation (Morgan, D. O., De Bondt, H. L., Curr. Opin. Cell. Biol. 1994, 6, 239-246). Once activated, Cdk1/cyclin complexes prepare the cell for division during M phase.
The transition from G1 phase into S phase as stated above is regulated by the complex of Cdk4 with cyclin D and Cdk2 with cyclin E. These complexes phosphorylate the tumor suppressor protein Retinoblastoma (pRb), releasing the transcription factor E2F and allowing the expression of genes required in S phase (Nevins, J. R. Science 1992, 258, 424-429; Lavia, P. BioEssays 1999, 21, 221-230). Blocking the activity of the Cdk4/cyclin D and Cdk2/cyclin E complexes arrests the cell cycle in G1 phase. For example, the proteins of the INK4 family, including p16INK4a, which block the kinase activity of the Cdk4/cyclin D complex, cause arrest in G1 (Sherr, C. J. Science 1996, 274, 1672-1677). The specific block has been reviewed (Vidal, A. Gene 2000, 247, 1-15).
Experiments have shown that the complex of Cdk4 with cyclin D3 also plays a role in cell cycle progression through G2 phase. Inhibition of this complex, either by p16 or using a dominant negative Cdk4, results in arrest in G2 phase in cells that do not express pRb (Gabrielli B. G. et al. J. Biol. Chem. 1999, 274, 13961-13969).
Numerous defects in the pRb pathway have been shown to be involved in various cancers. For example, over expression of Cdk4 has been observed in cases of hereditary melanoma (Webster, K. R. Exp. Opin. Invest. Drugs 1998, 7, 865-887); cyclin D is over expressed in many human cancers (Sherr, C. J. Science 1996, 274, 1672-1677); p16 is mutated or deleted in many tumors (Webster, K. R. Exp. Opin. Invest Drugs 1998, 7, 865-887); and pRb function is lost through mutation or deletion in many human cancers (Weinberg, R. A. Cell 1995, 81, 323-330). Defects in this pathway have also been shown to have an effect on prognosis. For example, loss of p16 is correlated with poor prognosis in non-small-cell lung carcinoma (NSCLC) and malignant melanoma (Tsihlias, J. et al. Annu. Rev. Med. 1999, 50, 401-423). Abnormalities of cyclin D1 and/or pRb at the gene and/or expression level were present in more than 90% of a series of non-small cell lung cancer specimens, indicating that cyclin D1 and/or pRb represent an important step in lung tumor genesis (Marchetti, A. et al. Int. J. Cancer 1998, 75, 573-582). In 49 out of 50 pancreatic carcinomas (98%), the pRb/p16 pathway was abrogated exclusively through inactivation of the p16 gene and cyclin D connected (Schutte, M. et al. Cancer Res. 1998, 57, 3126-3134). For a review on the relation between expression of pRb and the cyclin/cyclin dependent kinases in a number of tissues see Teicher, B. A. Cancer Chemother. Pharmacol. 2000, 46, 293-304.
Because of the involvement of the Cdk4/cyclin D/pRb pathway in human cancer through its role in regulating progression of the cell cycle from G1 to S phase, and the potential therapeutic benefit from modulating this pathway, there has been considerable interest in agents that inhibit or promote elements of this pathway. For example, effects on cancer cells have been shown using antibodies, antisense oligonucleotides and over expression or addition of proteins involved in the pathway. See, e.g., Lukas, J. et al. Nature 1995, 79, 573-582; Nevins, J. R. Science 1992, 258, 424-429; Lim, I. K. et al. Molecular Carcinogenesis 1998, 23, 25-35; Tam, S. W. et al. Oncogene 1994, 9, 2663-2674; Driscoll, B. et al. Am. J. Physiol. 1997, 273 (Lung Cell. Mol. Physiol.), L941-L949; and Sang, J. et al. Chin. Sci. Bull. 1999, 44, 541-544).
The role of cdks in the regulation of cellular proliferation is thus well established. For example, as shown above, there is an extensive body of literature validating the use of compounds inhibiting targets in the Cdk4, Cdk2 and Cdk1 pathways as anti-proliferative therapeutic agents. Inhibitors of cellular proliferation thus act as reversible cytostatic agents that are useful in the treatment of disease processes which feature abnormal cellular growth, such as cancers and other cell proliferative disorders including, for example inflammation (e.g. benign prostate hyperplasia, familial adenomauosis, polyposis, neurofibromatosis, atherosclerosis, pulmonary fibrosis, arthritis, psoriasis, inflammatory bowel disease, transplantation rejections infections), viral infections (including, but not limited to herpes virus, poxvirus, Epstein-Barr virus), autoimmune disease (e.g. lupus, rheumatoid arthritis, psoriasis, inflammatory bowel disease), neurodegenerative disorders (including but not limited to Alzheimer's disease), and neurodegenerative diseases (e.g. Parkinson's disease, amyotrophic lateral sclerosis, retinitis pigmentosa, spinal muscular atrophy, and cerebral degeneration).
For reviews of compounds inhibiting the Cdk4/cyclin D pathway see, for example: Harris, W. and Wilkinson, S., Emerging Drugs. 2000, 5, 287-297; Dumas, J., Exp. Opin. Ther. Patents. 2001, 11, 405-429; Sielecki T., et. al., J. Med. Chem. 2000, 43, 1-18.
SUMMARY OF THE INVENTION
The present invention relates to novel diaminopyrimidines of the formula




wherein

    R1 is selected from the group


heterocycle and lower alkyl-heterocycle, wherein the heterocycle moiety in both instances optionally may be substituted by up to four substituents independently selected from

    
    
        H,
        lower alkyl,
        lower alkyl substituted by oxo, OR12, CO2R12, NR5R6, S(O)nR15 or C(O)NR5R6,
        CO2R7,
        COR11,
        COR12,
        C(O)NR13R14,
        S(O)nR15,
        oxo,
        OR12; or
        NR5R6,
    
    


aryl,
aryl substituted by

    
    
        H,
        S(O)n—R15,
        NR5R6,
        carbonyl,
        carbonyl substituted by lower alkyl, OR12 or NR5R6,
        lower alkyl,
        lower alkyl substituted by OR10 or NR5R6,
        OR8;
        halogen,
    
    


cycloalkyl,
cycloalkyl substituted by OR7, NR5R5 or S(O)nR15,
lower alkyl, and
lower alkyl substituted by

    
    
        NR5R6,
        NR11SO2R15,
        CO2R10,
        S(O)nR15,
        heterocycle,
        heterocycle substituted by
        
            lower alkyl,
            CO2R12 or
            SO2R15,
        
        
        heteroaryl,
        heteroaryl substituted by
        
            lower alkyl,
            CO2R12, or
            SO2R15,
        
        
        aryl, and
        aryl substituted by
        
            lower alkyl,
            halogen,
            NR5R6,
            COR12, or
            CO2R12;
        
        
    
    
    R2 is selected from the group


aryl, heteroaryl, cycloalkyl and heterocycle, wherein each may be substituted by up to four substituents independently selected from the group

    
    
        lower alkyl,
        lower alkyl substituted by halogen or OR10,
        halogen,
        OR12,
        NO2,
        CN,
        NR5R6,
        S(O)n—R9, and
        SO2—NR16R17;
    
    
    R5 and R6 are each independently selected from the group
    
        H,
        lower alkyl,
        lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
        cycloalkyl,
        cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
        aryl,
        aryl substituted by NR13R14, OR12, CO2R12, C(O)NR13R14, SO2R15, halogen, lower alkyl, or lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR13R14 or NR13R14,
        SO2R15,
        CO2R12, and
        COR12,
    
    


or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, NR13R14, lower alkyl and lower alkyl substituted by OR12;

    R7 is selected from the group
    
        H,
        lower alkyl,
        lower alkyl substituted by OR12, CO2R12, NR5R6, C(O)NR5R6, halogen and oxo,
        cycloalkyl,
        cycloalkyl substituted by OH, oxo, or NH2,
        SO2R15, and
        COR12;
    
    
    R8 is selected from the group
    
        H,
        lower alkyl,
        lower alkyl substituted by NR5R6,
        heterocycle, and
        heterocycle substituted by lower alkyl, CO2R12 or SO2R15;
    
    
    R9 is selected from the group
    
        H, and
        lower alkyl;
    
    
    R10 is selected from the group
    
        lower alkyl,
        aryl, and
        aryl substituted by halogen or NR5R6;
    
    
    R11 is selected from the group
    
        H,
        lower alkyl, and
    
    


lower alkyl substituted by oxo and halogen;

    R12 is selected from the group
    
        H,
        lower alkyl, and
        lower alkyl substituted by NR5R6 or OR11;
    
    
    R13 and R14 are each independently selected from the group
    
        H,
        lower alkyl,
        lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
        cycloalkyl,
        cycloalkyl substituted by CO2R12, OR12, NR5R6, CONR5R6 or SO2R15,
        aryl,
    
    


aryl substituted by NR5R6, OR12, CO2R12, CONR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6;

    
    
        SO2R15,
        CO2R12, and
        COR12,
    
    


or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

    R15 is selected from the group
    
        aryl,
        aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
        heteroaryl,
        heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, NR5R6 or NR5R6,
        NR5R6,
        lower alkyl,
        lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
        heterocycle, and
        heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6;
    
    
    R16 and R17 are each independently selected from the group
    
        H, and
        lower alkyl,
    
    


or, alternatively, the group —NR16R17 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R16 and R17 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by lower alkyl, OH, oxo and NH2; and

    
    
        n is 0, 1 or 2;

or the pharmaceutically acceptable salts thereof.

    
    


These compounds inhibit cyclin-dependent kinases, most particularly Cdk1, Cdk2 and Cdk4 These compounds and their pharmaceutically acceptable salts have antiproliferative activity and are useful in the treatment or control of cancer, in particular solid tumors.
The present invention also relates to pharmaceutical compositions comprising one or more compounds of the invention, or a pharmaceutically acceptable salt or ester thereof, and a pharmaceutically acceptable carrier or excipient.
The present invention further relates to a method for treating or controlling cancer, more particularly the treatment or control of a solid tumor, most particularly to the treatment or control of breast, lung and colon and prostate tumors by administering to a patient in need of such therapy a therapeutically effective amount of a compound of formula I, or a pharmaceutically salt or ester thereof.


DETAILED DESCRIPTION OF THE INVENTION
Definitions
As used herein, the following terms shall have the following definitions.
“Alkoxy” means any alkyl radical that is attached to the remainder of the molecule by oxygen and is often designated by the monovalent radical RO—. Examples include methoxy, ethoxy, etc.
“Aryl” means a monovalent, monocyclic or bicyclic, aromatic carbocyclic hydrocarbon radical, preferably a 6-10 membered aromatic aromatic ring system. Preferred aryl groups include, but are not limited to, phenyl, naphthyl, tolyl and xylyl.
“Carbonyl” means the radical C═O.
“Cycloalkyl” means a non-aromatic, partially or completely saturated monovalent cyclic hydrocarbon radical containing 3 to 8 atoms. Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl.
“Effective amount” means an amount that is effective to prevent, alleviate or ameliorate symptoms of disease or prolong the survival of the subject being treated.
“Halogen” means fluorine, chlorine, bromine or iodine, preferably fluorine or chlorine.
“Hetero atom” means an atom selected from N, O and S.
“Heteroaryl” means an aromatic heterocyclic ring system containing up to two rings. Preferred heteroaryl groups include, but are not limited to, thienyl, furyl, indolyl, pyrrolyl, pyridinyl, pyridine, pyrazinyl, oxazolyl, thiaxolyl, quinolinyl, pyrimidinyl, imidazole, benzofuran and tetrazoly. Preferred ring systems include benzofuran, benzo oxazole and thiophene.
“Heterocycle” or “heterocyclyl” means a saturated or partially unsaturated, non-aromatic cyclic radical of 3 to 8 ring atoms in which from one to 3 ring atoms are hetero atoms selected from nitrogen, oxygen, S(O)n (where n is an integer from 0 to 2), or a combination thereof, the remaining ring atoms being C. Examples of preferred heterocycles are piperidine, piperazine, pyrrolidine, morpholine, indoline, tetrahydropyranyl, thiomorpholino, pentamethylene sulfide, and pentamethylene sulfone.
“IC50” refers to the concentration of a particular compound according to the invention required to inhibit 50% of a specific measured activity. IC50 can be measured, inter alia, as is described in Example 19A, infra.
“Ki” refers to a measure of the thermodynamic binding of the ligand/inhibitor (that is, a compound according to the invention) to the target protein. Ki can be measured, inter alia, as is described in Example 19B, infra.
“Lower alkyl” alone or in conjunction with another term, e.g. lower alkyl-heterocycle, denotes a straight-chain or branched saturated aliphatic hydrocarbon having 1 to 6, preferably 1 to 4, carbon atoms. Typical lower alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, t-butyl, 2-butyl, pentyl, hexyl and the like.
“Oxo” means ═O.
“Pharmaceutically acceptable ester” refers to a conventionally esterified compound of formula I having a carboxyl group, which esters retain the biological effectiveness and properties of the compounds of formula 1 and are cleaved in vivo (in the organism) to the corresponding active carboxylic acid. Further information concerning examples of and the use of esters for the delivery of pharmaceutical compounds is available in Design of Prodrugs. Bundgaard H ed. (Elsevier, 1985). See also, H. Ansel et. al., Pharmaceutical Dosage Forms and Drug Delivery Systems (6th Ed. 1995) at pp. 108-109; Krogsgaard-Larsen, et. al., Textbook of Drug Design and Development (2d Ed. 1996) at pp. 152-191.
“Pharmaceutically acceptable salt” refers to conventional acid-addition salts or base-addition salts that retain the biological effectiveness and properties of the compounds of formula I and are formed from suitable non-toxic organic or inorganic acids or organic or inorganic bases. Sample acid-addition salts include those derived from inorganic acids such as hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid, sulfamic acid, phosphoric acid and nitric acid, and those derived from organic acids such as p-toluene sulfonic acid, salicylic acid, methanesulfonic acid, oxalic acid, succinic acid, citric acid, malic acid, lactic acid, fumaric acid, and the like. Sample base-addition salts include those derived from ammonium, potassium, sodium and, quaternary ammonium hydroxides, such as for example, tetramethylammonium hydroxide. The chemical modification of a pharmaceutical compound (i.e. drug) into a salt is a technique well known to pharmaceutical chemists to obtain improved physical and chemical stability, hygroscopicity, flow ability and solubility of compounds. See, e.g., H. Ansel et. al., Pharmaceutical Dosage Forms and Drug Delivery Systems (6th Ed. 1995) at pp. 196 and 1456-1457.
“Pharmaceutically acceptable,” such as pharmaceutically acceptable carrier, excipient, etc., means pharmacologically acceptable and substantially non-toxic to the subject to which the particular compound is administered.
“Substituted,” as in substituted alkyl, means that the substitution can occur at one or more positions and, unless otherwise indicated, that the substituents at each substitution site are independently selected from the specified options, meaning that more than one substituent may be present simultaneously at various sites.
“Therapeutically effective amount” means an amount of at least one compound of Formula I, or a pharmaceutically acceptable salt or ester thereof, that significantly inhibits proliferation and/or prevents differentiation of a human tumor cell, including human tumor cell lines.
In one embodiment, the present invention relates to compounds of formula I




or the pharmaceutically acceptable salts thereof, wherein R1 and R2 are as defined above.

In a preferred embodiment of the compounds of formula I, R2 is aryl, preferably phenyl, more preferably phenyl substituted by halogen, most preferably F, or OR12 wherein R12 is lower alkyl. In a most preferred embodiment, R2 is phenyl substituted by one or two F molecules and one OR12 group wherein R12 is lower alkyl, preferably methyl.
In another preferred embodiment of the compounds of formula I, R2 is heteroaryl, preferably benzofuran, benzo oxazole or benzoazole, most preferably benzofuran preferably substituted by halogen, most preferably F.
In another preferred embodiment of the compounds of formula I, R2 is cycloalkyl, preferably cyclopentyl or cyclohexyl, each of which optionally may be substituted with lower alkyl and/or alkoxy.
In another preferred embodiment of the compounds of formula I, R2 is heterocycle, preferably piperidine, pyrrolidine or pentamethylene sulfide, each of which optionally may be substituted with lower alkyl or alkoxy.
In another preferred embodiment of the compounds of formula I, R2 is as defined above and R1 is a heterocycle, preferably piperidine or pyrrolidine, and most preferably substituted by S(O)nR15 wherein n is 2 and R15 is lower alkyl, NH2 or heteroaryl. Also preferred are heterocycles substituted by the group CO2R7 wherein R7 is lower alkyl.
In another preferred embodiment of the compounds of formula I, R2 is as defined above and R1 cycloalkyl, preferably cyclohexyl, and most preferably cyclohexane substituted by NR5R6 wherein R5 and R6 are H or one of R5 or R6 is SO2R15 and preferably R15 is lower alkyl or lower alkyl substituted by NR5R6.
In another preferred embodiment of the compounds of formula I, R2 is as defined above and R1 is a lower alkyl-heterocycle.
In another preferred embodiment of the compounds of formula I, R2 is as defined above and R1 is aryl, preferably phenyl, and most preferably phenyl substituted by S(O)nR15 wherein R15 is lower alkyl, preferably methyl.
In another preferred embodiment of the compounds of formula I, R2 is as defined above and R1 is a lower alkyl, preferably ethyl and propyl, and most preferably lower alkyl substituted by NR5R6 wherein one of R5 or R6 is SO2R15 and R15 is lower alkyl. Examples of such compounds include:

    N-{3-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-propyl}-methanesulfonamide (Example 8).


In another preferred embodiment, R1 selected from the group




wherein

    
    
        R3 is selected from the group
        
            H,
            lower alkyl,
            lower alkyl substituted by oxo, OR12, CO2R12, NR5R6, SO2R15 or C(O)NR5R6,
            CO2R7,
            COR12,
            C(O)NR5R6, and
            SO2R15;
        
        
        R4 is selected from the group
        
            H,
            OR11,
            lower alkyl,
            NR5R6,
            NO2,
            oxo
            CN, and
            halogen;
        
        
        R4′ is selected from the group
        
            H,
            OR11,
            lower alkyl,
            NR5R6,
            NO2,
            CN, and
            halogen;
        
        
        R5 and R6 are each independently selected from the group
        
            H,
            lower alkyl,
            lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
            cycloalkyl,
            cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
            aryl,
            aryl substituted by NR13R14, OR12, CO2R12, CONR13R14, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, CONR13R14 or NR13R14;
            SO2R15,
            CO2R12, and
            COR12,
        
        
    
    


or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, N13R14, lower alkyl and lower alkyl substituted by OR12;

    R7 is selected from the group
    
        H,
        lower alkyl,
        lower alkyl substituted by OR12, CO2R12, NR5R6, CONR5R6, halogen or oxo,
        cycloalkyl,
        cycloalkyl substituted by OH, oxo, or NH2,
        SO2R15, and
        COR12;
    
    
    R10 is selected from the group
    
        lower alkyl,
        aryl, and
    
    


aryl substituted by halogen or NR5R6;

    R11 is selected from the group
    
        H,
        lower alkyl, and
        lower alkyl substituted by oxo and halogen;
    
    
    R12 is selected from the group
    
        H
        lower alkyl, and
        lower alkyl substituted by halogen, oxo, NR5R6 or OR11;
    
    
    R13 and R14 are independently selected from
    
        H,
        lower alkyl,
        lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
        cycloalkyl,
        cycloalkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6 or SO2R15,
        aryl,
        aryl substituted by NR5R6, OR12, CO2R12, C(O)NR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 and NR5R6;
        SO2R15,
        CO2R12, and
        COR12,
    
    


or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

    R15 is selected from the group
    
        aryl,
        aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
    
    


heteroaryl,

    
    
        heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
        NR5R6,
        lower alkyl,
        lower alkyl substituted by the group halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
        heterocycle, and
        heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6; and
    
    
    n is 0, 1 or 2,

or the pharmaceutically acceptable salts thereof.



In another preferred embodiment, the invention relates to compounds of formula




wherein R3 and R4 are as defined above and R18, R19, R20 and R21 are each independently selected from lower alkyl, halogen and OR12. Preferably, R3 is selected from the group CO2R7, COR12 and SO2R15. Most preferably R3 is SO2R15 and R15 is lower alkyl or NR5R6. Preferred R4 groups include H, OR11 and lower alkyl. Preferred R5 and R6 groups are those wherein the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms and said ring atoms optionally being substituted by OH, oxo, NH2, lower alkyl or lower alkyl substituted by OR12.

Examples of compounds of formula I(a) include:

    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione (Example 1);
    4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-sulfonic acid amide (Example 4);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5-fluoro-2-methoxy-phenyl)-methanethione (Example 5);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzofuran-7-yl)-methanethione (Example 6);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzooxazol-7-yl)-methanethione (Example 7);
    {4-Amino-2-[1-(3-morpholin-4-yl-propane-1-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}(2,3-difluoro-6-methoxy-phenyl)-methanethione (Example 9);
    {4-Amino-2-[1-(pyridine-2-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}(2,3-difluoro-6-methoxy-phenyl)-methanethione (Example 10);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-thiophen-2-yl-methanethione (Example 11);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(6-chloro-2,3-difluoro-phenyl)-methanethione (Example 13);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,6-difluoro-phenyl)-methanethione (Example 15);
    [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-phenyl-methanethione (Example 16);
    4-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-carboxylic acid tert-butyl ester (Example 17); and
    [4-Amino-2-(1-methanesulfonyl-pyrrolidin-3-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione (Example 18).


Another preferred embodiment of the invention relates to compounds of formula




wherein R4, R5, R6, R18, R19, R20 and R21 are as defined above. Most preferably R4 is H, one of R5 or R6 is H or lower alkyl and the other is SO2R15, wherein R15 is lower alkyl, and two of R18-R21 are halogen, most preferably F, and one of R18-R21 is COR12, wherein R12 is lower alkyl, most preferably methyl.

Examples of such compounds include:

    N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}methanesulfonamide (Example 2);
    N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}-N-methylmethanesulfonamide (Example 3)


Another preferred embodiment of the invention relates to compounds of formula




wherein R4′, R15, R18, R19, R20 and R21 are as defined above. Most preferably n is 2, R4′ is H, R15 is lower alkyl, preferably methyl, or R15 is NR5R6, wherein R5 and R6 are H, and two of R18-21 are halogen, preferably F, and one of R18-21 is OR12, wherein R12 is lower alkyl, preferably methyl. Examples of such compounds include:

    [4-Amino-2-(4-methanesulfonyl-phenylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione (Example 12), and
    4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-benzenesulfonamide (Example 14).


The compounds disclosed herein and covered by formula I above may exhibit tautomerism or structural isomerism. It is intended that the invention encompasses any tautomeric or structural isomeric form of these compounds, or mixtures of such forms, and is not limited to any one tautomeric or structural isomeric form depicted in the formula above.
General Synthesis of Compounds According to the Invention
The compounds of the present invention can be prepared by any conventional means. Suitable processes for synthesizing these compounds are provided in the examples. Generally, compounds of formula I can be prepared according to the following scheme using starting materials that can be prepared according to the procedures described in US 2004/0162303 A1, which, to the extent necessary, is herein incorporated by reference:




wherein R1 and R2 are as herein defined.

Separating a Mixture of Stereoisomers into the Optically Pure Stereoisomers (when Compound of Formula I is Chiral)

The optional separation of isomeric structures of formula I can be carried out according to known methods such as for example resolution or chiral high pressure liquid chromatography (also known as chiral HPLC). Resolution methods are well known, and are summarized in “Enantiomers, Racemates, and Resolutions” (Jacques, J. et al. John Wiley and Sons, New York, 1981). Methods for chiral HPLC are also well known, and are summarized in “Separation of Enantiomers by Liquid Chromatographic Methods” (Pirkle, W. H. and Finn, J. in “Asymmetric Synthesis”, Vol. 1, Morrison, J. D., Ed., Academic Press, Inc., New York 1983, pp. 87-124).
Converting a Compound of Formula I that Bears a Basic Nitrogen into a Pharmaceutically Acceptable Acid Addition Salt
The optional conversion of a compound of formula I that bears a basic nitrogen into a pharmaceutically acceptable acid addition salt can be effected by conventional means. For example, the compound can be treated with an inorganic acid such as for example hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, or with an appropriate organic acid such as acetic acid, citric acid, tartaric acid, methanesulfonic acid, p-toluene sulfonic acid, or the like.
Compositions/Formulations
In an alternative embodiment, the present invention includes pharmaceutical compositions comprising at least one compound of formula I, or a pharmaceutically acceptable salt or ester thereof and an a pharmaceutically acceptable excipient and/or carrier.
These pharmaceutical compositions can be administered orally, for example in the form of tablets, coated tablets, dragees, hard or soft gelatin capsules, solutions, emulsions or suspensions. They can also be administered rectally, for example, in the form of suppositories, or parenterally, for example, in the form of injection solutions.
The pharmaceutical compositions of the present invention comprising compounds of formula I, and/or the salts thereof, may be manufactured in a manner that is known in the art, e.g. by means of conventional mixing, encapsulating, dissolving, granulating, emulsifying, entrapping, dragee-making, or lyophilizing processes. These pharmaceutical preparations can be formulated with therapeutically inert, inorganic or organic carriers. Lactose, corn starch or derivatives thereof, talc, steric acid or its salts can be used as such carriers for tablets, coated tablets, dragees and hard gelatin capsules. Suitable carriers for soft gelatin capsules include vegetable oils, waxes and fats. Depending on the nature of the active substance, no carriers are generally required in the case of soft gelatin capsules. Suitable carriers for the manufacture of solutions and syrups are water, polyols, saccharose, invert sugar and glucose. Suitable carriers for injection are water, alcohols, polyols, glycerine, vegetable oils, phospholipids and surfactants. Suitable carriers for suppositories are natural or hardened oils, waxes, fats and semi-liquid polyols.
The pharmaceutical preparations can also contain preserving agents, solubilizing agents, stabilizing agents, wetting agents, emulsifying agents, sweetening agents, coloring agents, flavoring agents, salts for varying the osmotic pressure, buffers, coating agents or antioxidants. They can also contain other therapeutically valuable substances, including additional active ingredients other than those of formula I.
Dosages
As mentioned above, the compounds of the present invention, including the compounds of formula I, are useful in the treatment or control of cell proliferative disorders, including chemoprevention of cancer. Chemoprevention is defined as inhibiting the development of invasive cancer by either blocking the initiating mutagenic event or by blocking the progression of pre-malignant cells that have already suffered an insult of inhibiting tumor relapse. These compounds and formulations containing said compounds are particularly useful in the treatment or control of solid tumors, such as, for example, breast, colon, lung and prostate tumors.
A therapeutically effective amount of a compound in accordance with this invention means an amount of compound that is effective to prevent, alleviate or ameliorate symptoms of disease or prolong the survival of the subject being treated. Determination of a therapeutically effective amount is within the skill in the art.
The therapeutically effective amount or dosage of a compound according to this invention can vary within wide limits and may be determined in a manner known in the art. Such dosage will be adjusted to the individual requirements in each particular case including the specific compound(s) being administered, the route of administration, the condition being treated, as well as the patient being treated. In general, in the case of oral or parenteral administration to adult humans weighing approximately 70 Kg, a daily dosage of about 10 mg to about 10,000 mg, preferably from about 200 mg to about 1,000 mg, should be appropriate, although the upper limit may be exceeded when indicated. The daily dosage can be administered as a single dose or in divided doses, or for parenteral administration, it may be given as continuous infusion.
Combinations
The compounds of this invention may be used in combination (administered in combination or sequentially) with known anti-cancer treatments such as radiation therapy or with cytostatic or cytotoxic agents, such as for example, but not limited to, DNA interactive agents, such as cisplatin or doxorubicin; topoisomerase II inhibitors such as etoposide: topoisomerase I inhibitors such as CPT-11 or topotecan; tublin interacting agents, such as paclitaxel, docetaxel or epothilones; hormonal agents such as tamoxifen: thymidilaate synthases inhibitors, such as 5-fluorouracil; and anti-metabolites such as methotrexate. Compounds of formula I may also be useful in combination with modulators of p53 transactivation.
If formulated as a fixed dose, the above-described combination products include the compounds of this invention within the dosage range described above and the other pharmaceutically active agent or treatment within its approved dose range. For example, an early cdk1 inhibitor olomucine has been found to act synergistically with well known cytotoxic agents in inducing apoptosis. (J. Cell Sci., 1995, 108, 2897-2904). Compounds of formula I may also be administered sequentially with known anticancer or cytoxic agents when concomitant administration or a combination is inappropriate. This invention is not limited in the sequence of administration: compounds of formula I may be administered either prior to or after administration of the known anticancer or cytotoxic agent. For example, the cytotoxic activity of the cdk inhibitor flavopiridol is affected by the sequence of administration with anticancer agents. (Cancer Research, 1997, 57, 3375).
EXAMPLES
The following examples illustrate preferred methods for synthesizing and using the compounds and formulations of the present invention. These examples and preparations are illustrative and are not intended to be limiting. It should be understood that there may be other embodiments which fall within the spirit and scope of the invention as defined by the claims appended hereto.
Example 1
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione




To a solution of [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 810 mg, 1.84 mmol) in 1.4-dioxane at reflux were added phoporous pentasulfide (888 mg, 2 mmol, Aldrich). The mixture was stirred at reflux for 1.5 hours and then cooled to room temperature. Saturated sodium bicarbonate (20 ml) was added and the resulting mixture was stirred for 30 min. The mixture was extracted with ethyl acetate (3×20 mL) and the extracts were combined and dried (Na2SO4). The residue was then chromatographed on an ISCO machine with ethyl acetate and hexane as eluent (30% EtOAc/Hexanes from 0 to 4 min.; 40% from 4 to 9 min.; 50% from 9 to 12 min.; 60% from 12 to 15 min.; 70% from 15 to 20 min. and 100% from 20 min. to 30 min.) to give an orange solid after removal of solvent. 630 mg, 75%. LC/MS (m+H)+: 458.
Example 2
N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}methanesulfonamide




By a similar procedure to the preparation of the compound of Example 1, N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}methanesulfonamide was made from N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-benzoyl)-pyrimidin-2-ylamino]-cyclohexyl}methanesulfonamide (prepared in accordance with US 2004/0162303 A1, 200 mg). LC/MS (m+H)+: 472.
Example 3
N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}-N-methylmethanesulfonamide




By a similar procedure to the preparation of the compound of Example 1, N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}-N-methyl-methanesulfonamide was made from N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-benzoyl)-pyrimidin-2-ylamino]-cyclohexyl}N-methyl-methanesulfonamide (prepared in accordance with US 2004/0162303 A1, 40 mg). LC/MS (m+H)+: 486.
Example 4
4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-sulfonic acid amide




By a similar procedure to the preparation of the compound of Example 1, 4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-sulfonic acid amide was made from 4-[4-Amino-5-(2,3-difluoro-6-methoxy-benzoyl)-pyrimidin-2-ylamino]-piperidine-1-sulfonic acid amide (prepared in accordance with US 2004/0162303 A1, 80 mg). LC/MS (m+H)+: 459.
Example 5
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5-fluoro-2-methoxy-phenyl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5-fluoro-2-methoxy-phenyl)-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5-fluoro-2-methoxy-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 40 mg). LC/MS (m+H)+: 440.
Example 6
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzofuran-7-yl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzofuran-7-yl)-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluorobenzofuran-7-yl)-methanone (prepared in accordance with US 2004/0162303 A1, 130 mg). LC/MS (m+H)+: 468.
Example 7
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzooxazol-7-yl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzooxazol-7-yl)-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzooxazol-7-yl)-methanone (prepared in accordance with US 2004/0162303 A1, 40 mg). LC/MS (m+H)+: 469.
Example 8
N-{3-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-propyl}-methanesulfonamide




By a similar procedure to the preparation of the compound of Example 1, N{3-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-propyl}-methanesulfonamide was made from N-{3-[4-Amino-5-(5-fluoro-2-methoxy-benzoyl)-pyrimidin-2-ylamino]-propyl}-methanesulfonamide (prepared in accordance with US 2004/0162303 A1, 70 mg). LC/MS (m+H)+: 414.
Example 9
{4-Amino-2-[1-(3-morpholin-4-yl-propane-1-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}(2,3-difluoro-6-methoxy-phenyl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, {4-Amino-2-[4-(3-morpholin-4-yl-propane-1-sulfonyl)-cyclohexylamino]-pyrimidin-5-yl}(2,3-difluoro-6-methoxy-phenyl)-methanethione was made from {4-Amino-2-[4-(3-morpholin-4-yl-propane-1-sulfonyl)-cyclohexylamino]-pyrimidin-5-yl}(2,3-difluoro-6-methoxy-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 60 mg). LC/MS (m+H)+: 570.
Example 10
{4-Amino-2-[1-(pyridine-2-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}-(2,3-difluoro-6-methoxy-phenyl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, {4-Amino-2-[1-(pyridine-2-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}-(2,3-difluoro-6-methoxy-phenyl)-methanethione was made from {4-Amino-2-[1-(pyridine-2-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}-(2,3-difluoro-6-methoxy-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 50 mg). LC/MS (m+H)+: 521.
Example 11
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-thiophen-2-yl-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-thiophen-2-yl-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-thiophen-2-yl-methanone (prepared in accordance with US 2004/0162303 A1, 80 mg). LC/MS (m+H)+: 398.
Example 12
[4-Amino-2-(4-methanesulfonyl-phenylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione




By a similar procedure to the preparation of Example 1, [4-Amino-2-(4-methanesulfonyl-phenylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione was made from [4-Amino-2-(4-methanesulfonyl-phenylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 104 mg). LC/MS (m+H)+: 451.
Example 13
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(6-chloro-2,3-difluoro-phenyl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(6-chloro-2,3-difluoro-phenyl)-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(6-chloro-2,3-difluoro-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 60 mg). LC/MS (m+H)+: 462.9.
Example 14
4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-benzenesulfonamide




By a similar procedure to the preparation of the compound of Example 1, 4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-benzenesulfonamide was made from 4-[4-Amino-5-(2,3-difluoro-6-methoxy-benzoyl)-pyrimidin-2-ylamino]-benzenesulfonamide (prepared in accordance with US 2004/0162303 A1, 50 mg). LC/MS (m+H)+: 452.
Example 15
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,6-difluoro-phenyl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,6-difluoro-phenyl)-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,6-difluoro-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 80 mg). LC/MS (m+H)+: 428.
Example 16
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-phenyl-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-phenyl-methanethione was made from [4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-phenyl-methanone (prepared in accordance with US 2004/0162303 A1, 56 mg). LC/MS (m+H)+: 392.
Example 17
4-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-carboxylic acid tert-butyl ester




By a similar procedure to the preparation of the compound of Example 1, 4-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-carboxylic acid tert-butyl ester was made from 4-[4-Amino-5-(5-fluoro-2-methoxy-benzoyl)-pyrimidin-2-ylamino]-piperidine-1-carboxylic acid tert-butyl ester (prepared in accordance with US 2004/0162303 A1, 380 mg). LC/MS (m+H)+: 462.
Example 18
[4-Amino-2-(1-methanesulfonyl-pyrrolidin-3-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione




By a similar procedure to the preparation of the compound of Example 1, [4-Amino-2-(1-methanesulfonyl-pyrrolidin-3-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione was made from ([4-Amino-2-(1-methanesulfonyl-pyrrolidin-3-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanone (prepared in accordance with US 2004/0162303 A1, 60 mg). LC/MS (m+H)+: 444.
The pharmacological properties of the compounds of this invention may be confirmed by a number of pharmacological assays. The exemplified pharmacological assays which follow have been carried out with the compounds according to the invention and their salts. The compounds of the invention exhibited Cdk1/cyclin A, Cdk2/cyclin E and/or Cdk4/cyclin D activity with Ki values of less than 0.5 μM. Additionally, the antiproliferative potency of some compounds of the invention was tested in the human colon tumor cell line HCT116 with IC50 values reported from an MTT assay of less than 1.0 μM, preferably less than 0.5 μM, most preferably less than 0.2 μM.
The below-described kinase and cell based assays would be recognized by a medicinal chemist as reasonably correlating to prospective cancer therapy.
Example 19
Kinase Assays
A: IC50 Measurement
To determine inhibition of Cdk4, Cdk2 and Cdk1 activity, kinase assays were conducted using FlashPlateTM assays (NENTM-Life Science Products). FlashPlate assays were performed using recombinant human cyclin B-CDK1, human cyclin E-CDK2 or human cyclin D1-CDK4 complexes. GST-cyclinE (GST-cycE), CDK2, GST-cyclinB (GST-cycB), CDK1, GST-CDK4 and cyclin D1 (cycD1) cDNA clones in baculovirus vectors were provided by Dr. W. Harper at the Baylor College of Medicine, Houston, Tex. Proteins were co-expressed in High FiveTM insect cells and the complex was purified on glutathione Sepharose resin (Pharmacia, Piscataway, N.J.) as previously described (Harper, J. W. et al. Cell 1993, 75, 805-816). A 6×-Histidine tagged truncated form of retinoblastoma (Rb) protein (amino acid 386-928) was used as the substrate for the cycD1-CDK4, cycB-CDK1 and the cycE-CDK2 assays (the expression plasmid was provided by Dr. Veronica Sullivan, Department of Molecular Virology, Roche Research Centre, Welwyn Garden City, United Kingdom). The Rb protein is a natural substrate for phosphorylation by CDK4, CDK2 and CDK1 (see Herwig and Strauss Eur. J. Biochem. Vol. 246 (1997) pp. 581-601 and the references cited therein).
The expression of the 62 Kd protein was under the control of an IPTG inducible promoter in an M15 E. coli strain. Cells were lysed by sonication and purification was carried out by binding lysates at pH 8.0 to a Ni-chelated agarose column pretreated with 1 mM imidazole. The resin was then washed several times with incrementally decreasing pH buffers to pH 6.0, and eluted with 500 mM imidazole. Eluted protein was dialysed against 20 mM HEPES pH 7.5, 30% glycerol, 200 mM NaCl, and 1 mM DTT. Purified Rb fusion protein stocks were quantitated for protein concentration, aliquoted, and stored at −70° C.
For all three kinase assays reported herein, 96-well FlashPlates were coated with Rb protein at 10 μg/ml, using 100 μl per well. Plates were incubated at 4° C. overnight or at room temperature for 3 hours on a shaker. To control for nonspecific phosphorylation, one row of wells was coated with 100 μl/well coating buffer (20 mM HEPES, 0.2 M NaCl). Plates were then washed twice with wash buffer (0.01% Tween 20 in phosphate-buffered saline). Compounds to be tested (“test compounds”) were added to the wells at 5× final concentration. Reactions were initiated by immediate addition of 40 μl reaction mix (25 mM HEPES, 20 mM MgCl2, 0.002% Tween 20, 2 mM DTT, 1 μM ATP, 4 nM 33P-ATP) and a sufficient amount of enzyme to give counts that were at least 10-fold above background. Plates were incubated at room temperature on a shaker for 30 minutes. Plates were washed four times with the wash buffer, sealed, and counted on the TopCount scintillation counter (Packard Instrument Co., Downers Grove, Ill.]. The percent inhibition of Rb phosphorylation, which is a measure of the inhibition of CDK activity, was determined according to the following formula:




  
    100
    ×
    1
  
  -
  
    
      
        test
        ⁢
        
          
        
        ⁢
        compound
      
      -
      nonspecific
    
    
      total
      -
      nonspecific
    
  




where “test compound” refers to the average counts per minute of the test duplicates, “nonspecific” refers to the average counts per minute when no CyclinD/Cdk4, etc., was added, and “total” refers to the average counts per minute when no compound was added. The IC50 value is the concentration of test compound that reduces by 50% the protein-kinase induced incorporation of the radiolabel under the test conditions described.

B: Ki Measurement

Alternatively, inhibition activity may be measured using Ki. Using the protein constructs described above in Example 19A above, CDK1, CDK2, and CDK4 HTRF assays were set up. These were done in 96-well format and read in 384-well plate format. The assays were run at 3× their respective Kms for ATP.
In the CDK4 assay, test compounds were diluted to 3× their final concentrations in 25 mM Hepes, pH 7.0, 6.25 mM MgCl2, 1.5 mM DTT, 135 μM ATP. The DMSO concentration was no greater than 4.76%. Twenty microliters were added to the wells of a 96-well plate. The kinase reaction was initiated by the addition of 40 μl/well of a solution containing 0.185 μM Rb and 2.25 μg/ml CDK4 in 25 mM Hepes, pH 7.0, 6.25 mM MgCl2, 0.003% Tween-20, 0.3 mg/ml BSA, 1.5 mM DTT. Blank wells without CDK4 were included. The plates were incubated at 37° C. for 30 minutes with shaking. The kinase reaction was terminated by the addition of 15 μl/well of 1.6 uM anti-phospho-Rb (Ser 780) antibody (Cell Signaling Inc.) in 25 mM Hepes, pH 7.0, 24 mM EDTA, 0.2 mg/ml BSA. After 30 minutes at 37° C., 15 μl/well of 3 nM Lance-Eu-W1024 labeled anti-rabbit IgG and 60 nM Allophycocyanin conjugated anti-His6 (PerkinElmer Life Sciences) in 25 mM Hepes, pH 7.0, 0.5 mg/ml BSA were added. Following a one hour incubation at 37 deg C., 35 μl of each well, in duplicate, were transferred to 384-well black plates. The plates were read using either ViewLux or Victor V readers (PerkinElmer Life Sciences) using an excitation wavelength of 340 nm and dual emission wavelengths of 615 nm and 665 nm. IC50 values (the concentration of test compounds reducing the assay control fluorescence read-out by 50%) were first calculated from net readings at 665 nm, normalized for europium readings at 615 nm. For ATP competitive inhibitors, the Ki values were calculated according to the following equation:

Ki=IC50/(1+S/Km) where S refers to the substrate concentration and Km refers to the Michaelis-Menten constant.

The CDK1 and CDK2 assays were similarly run except for small differences in reagent and protein concentrations:
The compound and enzyme buffers for both assays contained 10 mM MgCl2. For CDK1 and CDK2, the respective reagent ATP concentrations were 162 uM and 90 uM. CDK1 at a reagent concentration of 0.15 ng/ul and CDK2 at a reagent concentration of 0.06 ng/ul were used. Reagent concentrations of detection reagents were adjusted between 3-12 nM Eu-Ab and 60-90 nM APC-antiHis 6 to give signal to background ratios of at least 10 to 1.
The results of this assay with respect to representative compounds of the invention are provided below in Table 1.
Example 20
Cell Based Assays (Tetrazolium Dye Proliferation Assay) (“MTT Assay”)
Proliferation was evaluated by the tetrazolium dye assay according to the procedure of Denizot and Lang (Denizot, F. and Lang, R. J Immunol Methods 1986, 89, 271-277). The cell line used was HCT116, a colorectal carcinoma cell line obtained from the American Type Cell Culture Collection (ATCC; Rockville, Md.). The cells were grown in McCoy's 5A medium supplemented with 10% FCS and L-glutamine.
Cells were plated at the appropriate seeding density to give logarithmic growth over the course of the assay in a 96-well tissue culture plate. Plates were incubated overnight at 37° C. in a humidified incubator with 5% CO2. The next day, test compounds were serially diluted to four times the final concentration in the appropriate medium containing 1.2% DMSO. One-fourth final volume of each dilution was added in duplicate to the plates containing cells. The same volume of 1.2% DMSO in medium was added to a row of “control wells” such that the final concentration of DMSO in each well was 0.3%. Wells to which no cells were added served as the “blank.” Wells to which no inhibitor was added served as “no inhibitor control.” The plates were) returned to the incubator, and at set time points (determined by their growth curves) plates were analyzed as described below.
3-(4,5-dimethylthiazole-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (thiazolyl blue; MTT; Sigma) was added to each well to yield a final concentration of 1 mg/ml. Plates were returned to the incubator for 2.5-3 hours at 37° C. The MTT-containing medium was removed and the resulting formazan metabolite was solubilized in 100% ethanol with shaking for 15 minutes at room temperature. Absorbance readings were taken in a microtiter plate reader (Dynatech and Molecular Devices plate readers were used interchangeably) at a wavelength of 570 nm with a 650 nm reference. Percent inhibition (% INH) is calculated by subtracting the absorbance of the blank well from all wells, then subtracting the ratio of the average absorbance of each test duplicate (SAVE) by the average of the controls (CAVE) from 1.00. The final number is then multiplied by 100 (% INH=(1.00−SAVE/CAVE)×100). The concentration at which 50% inhibition of cell proliferation is obtained (the IC50) is determined from the linear regression of a plot of the logarithm of the concentration versus percent inhibition.
The results of this assay with respect to representative compounds of the invention are provided below in Table 1.










TABLE 1









Ki (uM)
IC50 (uM)













Example
Name
Structure
CDK1
CDK2
CDK4
HCT116
















1
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(2,3-difluoro-6-methoxy- phenyl)-methanethione




0.00013
0.00012
0.00017
0.020


 


2
N-{4-[4-Amino-5-(2,3-difluoro- 6-methoxy-thiobenzoyl)- pyrimidin-2-ylamino]-cyclo- hexyl}-methanesulfonamide




0.00027
0.00018
0.00060
0.012


 


3
N-{4-[4-Amino-5-(2,3-difluoro- 6-methoxy-thiobenzoyl)- pyrimidin-2-ylamino]-cyclo- hexyl}-N-methyl-methane- sulfonamide




0.00042
0.00027
0.00133
0.013


 


4
4-[4-Amino-5-(2,3-difluoro-6- methoxy-thiobenzoyl)- pyrimidin-2-ylamino]-piper- idine-1-sulfonic acid amide




<0.003
<0.001
<0.001
0.003


 


5
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(5-fluoro-2-methoxy- phenyl)-methanethione




<0.01
0.0013
0.0013
0.081


 


6
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(5,6-difluoro-benzofuran- 7-yl)-methanethione




0.003
0.0001
0.00026
0.013


 


7
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(5,6-difluoro-benzooxazol- 7-yl)-methanethione




0.006
0.016
0.005
NA


 


8
N-{3-[4-Amino-5-(5-fluoro-2- methoxy-thiobenzoyl)- pyrimidin-2-ylamino]- propyl}-methanesulfonamide




0.089
0.065
0.037
NA


 


9
{4-Amino-2-[1-(3-morpholin-4- yl-propane-1-sulfonyl)-piperidin- 4-yl-amino]-pyrimidin-5-yl}- (2,3-difluoro-6-methoxy- phenyl)-methanethione




0.014
0.001
0.000
NA


 


10
{4-Amino-2-[1-(pyridine-2- sulfonyl)-piperidin-4-ylamino]- pyrimidin-5-yl}-(2,3-difluoro- 6-methoxy-phenyl)- methanethione




0.003
0.001
0.000
NA


 


11
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-thiophen-2-yl- methanethione




0.043
0.012
0.010
NA


 


12
[4-Amino-2-(4-methanesulfonyl- phenylamino)-pyrimidin-5-yl]- (2,3-difluoro-6-methoxy- phenyl)-methanethione




0.003
0.001
0.007
NA


 


13
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(6-chloro-2,3-difluoro- phenyl)-methanethione




0.003
0.001
0.003
0.176


 


14
4-[4-Amino-5-(2,3-difluoro-6- methoxy-thiobenzoyl)-pyrimidin- 2-ylamino]-benzenesulfonamide




0.003
0.001
0.003
0.032


 


15
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(2,6-difluoro-phenyl) methanethione




0.003
0.001
0.001
0.171


 


16
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-phenyl-methanethione




0.027
0.010
0.015
NA


 


17
[4-Amino-2-(1-methanesulfonyl- piperidin-4-ylamino)-pyrimidin- 5-yl]-(5-fluoro-2-methoxy- phenyl)-methanethione




0.261
0.195
NA
NA


 


18
[4-Amino-2-(1-methanesulfonyl- pyrrolidin-3-ylamino)-pyrimidin- 5-yl]-(2,3-difluoro-6-methoxy- phenyl)-methanethione




0.000
0.001
0.0028
NA









Example 21










Tablet Formulation









Item
Ingredients
Mg/Tablet

















1
Compound A *
5
25
100
250
500
750


2
Anhydrous Lactose
103
83
35
19
38
57


3
Croscarmellose
6
6
8
16
32
48



Sodium


4
Povidone K30
5
5
6
12
24
36


5
Magnesium Stearate
1
1
1
3
6
9



Total Weight
120
120
150
300
600
900





* Compound A represents a compound of the invention.






Manufacturing Procedure:

    1. Mix Items 1, 2 and 3 in a suitable mixer for 15 minutes.
    2. Granulate the powder mix from Step 1 with 20% Povidone K30 Solution (Item 4).
    3. Dry the granulation from Step 2 at 50° C.
    4. Pass the granulation from Step 3 through a suitable milling equipment.
    5. Add the Item 5 to the milled granulation Step 4 and mix for 3 minutes.
    6. Compress the granulation from Step 5 on a suitable press.


Example 22










Capsule Formulation









Item
Ingredients
mg/Capsule
















1
Compound A *
5
25
100
250
500


2
Anhydrous Lactose
159
123
148
—
—


3
Corn Starch
25
35
40
35
70


4
Talc
10
15
10
12
24


5
Magnesium Stearate
1
2
2
3
6



Total Fill Weight
200
200
300
300
600





Compound A represents a compound of the invention.






Manufacturing Procedure:

    1. Mix Items 1, 2 and 3 in a suitable mixer for 15 minutes.
    2. Add Items 4 & 5 and mix for 3 minutes.
    3. Fill into a suitable capsule.


Example 23










Injection Solution/Emulsion Preparation









Item
Ingredient
mg/mL













1
Compound A *
1
mg


2
PEG 400
10–50
mg


3
Lecithin
20–50
mg


4
Soy Oil
1–5
mg


5
Glycerol
8–12
mg


6
Water q.s.
1
mL





Compound A represents a compound of the invention.






Manufacturing Procedure:

    1. Dissolve item 1 in item 2.
    2. Add items 3, 4 and 5 to item 6 and mix until dispersed, then homogenize.
    3. Add the solution from step 1 to the mixture from step 2 and homogenize until the dispersion is translucent.
    4. Sterile filter through a 0.2 μm filter and fill into vials.


Example 24










Injection Solution/Emulsion Preparation









Item
Ingredient
mg/mL













1
Compound A *
1
mg


2
Glycofurol
10–50
mg


3
Lecithin
20–50
mg


4
Soy Oil
1–5
mg


5
Glycerol
8–12
mg


6
Water
q.s. 1
mL





Compound A represents a compound of the invention.






Manufacturing Procedure:

    1. Dissolve item 1 in item 2.
    2. Add items 3, 4 and 5 to item 6 and mix until dispersed, then homogenize.
    3. Add the solution from step 1 to the mixture from step 2 and homogenize until the dispersion is translucent.
    4. Sterile filter through a 0.2 μm filter and fill into vials.


While the invention has been illustrated by reference to specific and preferred embodiments, those skilled in the art will understand that variations and modifications may be through routine experimentation and practice of the invention. Thus, the invention is intended not to be limited by the foregoing description, but to be defined by the appended claims and their equivalents.

## Claims

1. A compound of the formula




wherein
R1 is selected from the group
heterocycle and lower alkyl-heterocycle, wherein the heterocycle moiety in both instances optionally may be substituted by up to four substituents independently selected from
H,
lower alkyl,
lower alkyl substituted by oxo, OR12, CO2R12, NR5R6, S(O)nR15 or C(O)NR5R6,
CO2R7,
COR11,
COR12,
C(O)NR13R14,
S(O)nR15,
oxo,
OR12; or
NR5R6,

aryl,
aryl substituted by
H,
S(O)n—R15,
NR5R6,
carbonyl,
carbonyl substituted by lower alkyl, OR12 or NR5R6,
lower alkyl,
lower alkyl substituted by OR10 or NR5R6,
OR8;
halogen,

cycloalkyl,
cycloalkyl substituted by OR7, NR5R6 or S(O)nR15,
lower alkyl, and
lower alkyl substituted by
NR5R6,
NR11SO2R15,
CO2R10,
S(O)nR15,
heterocycle,
heterocycle substituted by
lower alkyl,
CO2R12 or
SO2R15,

heteroaryl,
heteroaryl substituted by
lower alkyl,
CO2R12, or
SO2R15,

aryl, and
aryl substituted by
lower alkyl,
halogen,
NR5R6,
COR12, or
CO2R12;



R2 is selected from the group
aryl, heteroaryl, cycloalkyl and heterocycle, wherein each may be substituted by up to four substituents independently selected from the group
lower alkyl,
lower alkyl substituted by halogen or OR10,
halogen,
OR12,
NO2,
CN,
NR5R6,
S(O)n—R9, and
SO2—NR16R17;


R5 and R6 are each independently selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
aryl,
aryl substituted by NR13R14, OR12, CO2R12, C(O)NR13R14, SO2R15, halogen, lower alkyl, or lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR13R14 or NR13R14,
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, NR13R14, lower alkyl and lower alkyl substituted by OR12;

R7 is selected from the group
H,
lower alkyl,
lower alkyl substituted by OR12, CO2R12, NR5R6, C(O)NR5R6, halogen, oxo, aryl or aryl substituted by up to three substituents independently selected from lower alkyl, halogen and NR5R6,
cycloalkyl,
cycloalkyl substituted by OH, oxo, or NH2,
SO2R15, and
COR12;

R8 is selected from the group
H,
lower alkyl,
lower alkyl substituted by NR5R6,
heterocycle, and
heterocycle substituted by lower alkyl, CO2R12 or SO2R15;

R9 is selected from the group
H, and
lower alkyl;

R10 is selected from the group
lower alkyl,
aryl, and
aryl substituted by halogen or NR5R6;

R11 is selected from the group
H,
lower alkyl, and
lower alkyl substituted by oxo and halogen;

R12 is selected from the group
H,
lower alkyl, and
lower alkyl substituted by NR5R6 or OR11;

R13 and R14 are each independently selected from the group
H,
lower alkyl,
lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR5R6, CONR5R6 or SO2R15,
aryl,
aryl substituted by NR5R6, OR12, CO2R12, CONR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

R15 is selected from the group
aryl,
aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heteroaryl,
heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, NR5R6 or NR5R6,
NR5R6,
lower alkyl,
lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heterocycle, and
heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6;

R16 and R17 are each independently selected from the group
H, and
lower alkyl,
or, alternatively, the group —NR16R17 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R16 and R17 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by lower alkyl, OH, oxo and NH2; and
n is 0, 1 or 2;


or the pharmaceutically acceptable salts thereof.

2. The compound of claim 1 wherein R2 is phenyl substituted by two F molecules and one OR12 and wherein R12 is methyl.

3. The compound of claim 1 wherein R2 is heteroaryl selected from benzofuran, benzooxazole and benzoazole.

4. The compound of claim 1 wherein R2 is cyclohexyl that optionally is substituted by alkoxy.

5. The compound of claim 1 wherein R1 is ethyl or propyl that optionally is substituted by NR5R6 wherein one of R5 or R6 is SO2R15 and R15 is lower alkyl.

6. The compound of claim 5 which is N-{3-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-propyl}-methanesulfonamide.

7. The compound of claim 1 wherein R1 selected from the group




wherein
R3 is selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, OR12, CO2R12, NR5R6, SO2R15 or C(O)NR5R6,
CO2R7,
COR12,
C(O)NR5R6, and
SO2R15;

R4 is selected from the group
H,
OR11,
lower alkyl,
NR5R6,
NO2,
oxo
CN, and
halogen;

R4′ is selected from the group
H,
OR11,
lower alkyl,
NR5R6,
NO2,
CN, and
halogen;

R5 and R6 are each independently selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
aryl,
aryl substituted by NR13R14, OR12, CO2R12, CONR13R14, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, CONR13R14 or NR13R14;
SO2R15,
CO2R12, and
COR12,

or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, N13R14, lower alkyl and lower alkyl substituted by OR12;
R7 is selected from the group
H,
lower alkyl,
lower alkyl substituted by OR12, CO2R12, NR5R6, or CONR5R6, halogen, oxo, aryl, aryl substituted by up to three substituents independently selected from lower alkyl, halogen, or NR5R6,
cycloalkyl,
cycloalkyl substituted by OH, oxo, or NH2,
SO2R15, and
COR12;

R10 is selected from the group
lower alkyl,
aryl, and
aryl substituted by halogen or NR5R6;

R11 is selected from the group
H,
lower alkyl, and
lower alkyl substituted by oxo and halogen;

R12 is selected from the group
H
lower alkyl, and
lower alkyl substituted by halogen, oxo, NR5R6 or OR11;

R13 and R14 are independently selected from
H,
lower alkyl,
lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6 or SO2R15,
aryl,
aryl substituted by NR5R6, OR12, CO2R12, C(O)NR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 and NR5R6;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

R15 is selected from the group
aryl,
aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heteroaryl,
heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
NR5R6,
lower alkyl,
lower alkyl substituted by the group halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heterocycle, and
heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6; and

n is 0, 1 or 2,

or the pharmaceutically acceptable salts thereof.

8. A compound of formula




wherein
R3 is selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, OR12, CO2R12, NR5R6, SO2R15 or C(O)NR5R6,
CO2R7,
COR12,
C(O)NR5R6, and
SO2R15;

R4 is selected from the group
H,
OR11,
lower alkyl,
NR5R6,
NO2,
oxo
CN, and
halogen;

R5 and R6 are each independently selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
aryl,
aryl substituted by NR13R14, OR12, CO2R12, CONR13R14, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, CONR13R14 or NR13R14;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, N13R14, lower alkyl and lower alkyl substituted by OR12;

R7 is selected from the group
H,
lower alkyl,
lower alkyl substituted by OR12, CO2R12, NR5R6, or CONR5R6, halogen, oxo, aryl, aryl substituted by up to three substituents independently selected from lower alkyl, halogen, or NR5R6,
cycloalkyl,
cycloalkyl substituted by OH, oxo, or NH2,
SO2R15, and
COR12;

R11 is selected from the group
H,
lower alkyl, and
lower alkyl substituted by oxo and halogen;

R12 is selected from the group
H
lower alkyl, and
lower alkyl substituted by halogen, oxo, NR5R6 or OR11;

R13 and R14 are independently selected from
H,
lower alkyl,
lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6 or SO2R15,
aryl,
aryl substituted by NR5R5, OR12, CO2R12, C(O)NR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 and NR5R6;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

R15 is selected from the group
aryl,
aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heteroaryl,
heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
NR5R6,
lower alkyl,
lower alkyl substituted by the group halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heterocycle, and
heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6;

R18, R19, R20 and R21 are each independently selected from
lower alkyl,
halogen, and
OR12;


or the pharmaceutically acceptable salts thereof.

9. The compound of claim 8 wherein R3 is selected from the group CO2R7, COR12 and SO2R15 and R4 is H, OR11 or lower alkyl.

10. The compound of claim 8 that is selected from the group:
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione;
4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-sulfonic acid amide;
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5-fluoro-2-methoxy-phenyl)-methanethione;
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzofuran-7-yl)-methanethione;
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(5,6-difluoro-benzooxazol-7-yl)-methanethione;
{4-Amino-2-[1-(3-morpholin-4-yl-propane-1-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}(2,3-difluoro-6-methoxy-phenyl)-methanethione;
{4-Amino-2-[1-(pyridine-2-sulfonyl)-piperidin-4-ylamino]-pyrimidin-5-yl}-(2,3-difluoro-6-methoxy-phenyl)-methanethione;
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-thiophen-2-yl-methanethione; and
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(6-chloro-2,3-difluoro-phenyl)-methanethione.

11. The compound of claim 8 that is selected from the group:
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-(2,6-difluoro-phenyl)-methanethione;
[4-Amino-2-(1-methanesulfonyl-piperidin-4-ylamino)-pyrimidin-5-yl]-phenyl-methanethione;
4-[4-Amino-5-(5-fluoro-2-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-piperidine-1-carboxylic acid tert-butyl ester; and
[4-Amino-2-(1-methanesulfonyl-pyrrolidin-3-ylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione.

12. A compound of formula




wherein
R4 is selected from the group
H,
OR11,
lower alkyl,
NR5R6,
NO2,
oxo
CN, and
halogen;

R5 and R6 are each independently selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
aryl,
aryl substituted by NR13R14, OR12, CO2R12, CONR13R14, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, CONR13R14 or NR13R14;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, N13R14, lower alkyl and lower alkyl substituted by OR12;

R10 is selected from the group
lower alkyl,
aryl, and
aryl substituted by halogen or NR5R6;

R11 is selected from the group
H,
lower alkyl, and
lower alkyl substituted by oxo and halogen;

R12 is selected from the group
H
lower alkyl, and
lower alkyl substituted by halogen, oxo, NR5R6 or OR11;

R13 and R14 are independently selected from
H,
lower alkyl,
lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6 or SO2R15,
aryl,
aryl substituted by NR5R6, OR12, CO2R12, C(O)NR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 and NR5R6;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

R15 is selected from the group
aryl,
aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heteroaryl,
heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
NR5R6,
lower alkyl,
lower alkyl substituted by the group halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heterocycle, and
heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6; and

R18, R19, R20 and R21 are each independently selected from
lower alkyl,
halogen, and
OR12;


or the pharmaceutically acceptable salts thereof.

13. The compound of claim 12 wherein R4 is H, one of R5 or R6 is H or lower alkyl and the other is SO2R15, wherein R15 is lower alkyl, and two of R18-R21 are halogen, and one of R18-R21 is COR12, wherein R12 is lower alkyl.

14. The compound of claim 12 which is selected from the group:
N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}methanesulfonamide; and
N-{4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-cyclohexyl}-N-methylmethanesulfonamide.

15. A compound of formula




wherein
R4′ is selected from the group
H,
OR11,
lower alkyl,
NR5R6,
NO2,
CN, and
halogen;

R5 and R6 are each independently selected from the group
H,
lower alkyl,
lower alkyl substituted by oxo, CO2R12, OR12, NR13R14, C(O)NR13R14, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR13R14, C(O)NR13R14 or SO2R15,
aryl,
aryl substituted by NR13R14, OR12, CO2R12, CONR13R14, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, CONR13R14 or NR13R14;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR5R6 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R5 and R6 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms or the group SO2, and said ring atoms optionally being substituted by OH, oxo, N13R14, lower alkyl and lower alkyl substituted by OR12;

R11 is selected from the group
H,
lower alkyl, and
lower alkyl substituted by oxo and halogen;

R12 is selected from the group
H
lower alkyl, and
lower alkyl substituted by halogen, oxo, NR5R6 or OR11;

R13 and R14 are independently selected from
H,
lower alkyl,
lower alkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6, SO2R15, NSO2R12, heteroaryl, heterocycle, or heterocycle substituted by oxo,
cycloalkyl,
cycloalkyl substituted by CO2R12, OR12, NR5R6, C(O)NR5R6 or
SO2R15,
aryl,
aryl substituted by NR5R6, OR12, CO2R12, C(O)NR5R6, SO2R15, halogen, lower alkyl, and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 and NR5R6;
SO2R15,
CO2R12, and
COR12,
or alternatively, the group —NR13R14 can form a ring having a total of from 3 to 7 ring atoms, said ring atoms comprising in addition to the nitrogen to which R13 and R14 are bonded, carbon ring atoms, said carbon ring atoms optionally being replaced by one or more additional N or O ring atoms, and said ring atoms optionally being substituted by OH, oxo, NR5R6, lower alkyl and lower alkyl substituted by OR12;

R15 is selected from the group
aryl,
aryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heteroaryl,
heteroaryl substituted by the group halogen, CO2R12, SO2R10, COR12, lower alkyl and lower alkyl substituted by halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
NR5R6,
lower alkyl,
lower alkyl substituted by the group halogen, OR12, oxo, CO2R12, C(O)NR5R6 or NR5R6,
heterocycle, and
heterocycle substituted by the group CO2R12, COR12, SO2R12, lower alkyl, C(O)NR5R6 or NR5R6;

R18, R19, R20 and R21 are each independently selected from
lower alkyl,
halogen, and
OR12; and

n is 0, 1 or 2,

or the pharmaceutically acceptable salts thereof.

16. The compound of claim 15 wherein n is 2, R4′ is H and R15 is lower alkyl or NR5R6.

17. The compound of claim 16 wherein R15 is NR5R6 and wherein R5 and R6 are H.

18. The compound of claim 16 wherein two of R18-21 are halogen and one of R18-21 is OR12, wherein R12 is lower alkyl.

19. The compound of claim 15 which is selected from:
[4-Amino-2-(4-methanesulfonyl-phenylamino)-pyrimidin-5-yl]-(2,3-difluoro-6-methoxy-phenyl)-methanethione, and
4-[4-Amino-5-(2,3-difluoro-6-methoxy-thiobenzoyl)-pyrimidin-2-ylamino]-benzenesulfonamide.

20. A composition comprising as an active ingredient a therapeutically effective amount of a compound of claim 1 and a pharmaceutically acceptable carrier or excipient.