UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

WASHINGTON, DC 20549





FORM 10-Q/A

(Amendment No. 1)





(Mark One)

|x | QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
|- | ---------------------------------------------------------------------------------------

For the quarterly period ended March 31, 2015

OR



| ̈ | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934
|- | ----------------------------------------------------------------------------------------

Commission File Number: 001-36370





APPLIED
GENETIC TECHNOLOGIES CORPORATION

(Exact Name of Registrant as Specified in Its Charter)







|                                                               |  |                                     
|-------------------------------------------------------------- |  | ------------------------------------
|Delaware                                                       |  | 59-3553710                          
|(State or Other Jurisdiction of
Incorporation or Organization) |  | (I.R.S. Employer
Identification No.)

11801 Research Drive

Suite D

Alachua, Florida
32615

(Address of Principal Executive Offices, Including Zip Code)

(386) 462-2204

(Registrants Telephone Number, Including Area Code)





Indicate by check mark whether the registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act
of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.    Yes  x    No   ̈

Indicate by check mark
whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T during the preceding 12 months (or for such
shorter period that the registrant was required to submit and post such
files).    Yes  x    No   ̈

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See
definitions of large accelerated filer, accelerated filer and smaller reporting company in Rule 12b-2 of the Exchange Act. (Check one):



|                        |  |                                                  |  |                           |  |  
|----------------------- |  | ------------------------------------------------ |  | ------------------------- |  | -
|Large accelerated filer |  |  ̈                                                |  | Accelerated filer         |  |  ̈
|                        |  |                                                  | 
|Non-accelerated filer   |  | x  (Do not check if a smaller reporting company) |  | Smaller reporting company |  |  ̈

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange
Act).    Yes   ̈    No  x

As of April 30, 2015, a total of 16,475,654 shares of the registrants outstanding common stock, $0.001 par value per share, were outstanding.









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EXPLANATORY NOTE

Applied Genetic Technologies Corporation (the Company) is filing this Amendment No. 1 (the Amendment No. 1)
to its Quarterly Report on Form 10-Q for the quarter ended March 31, 2015, which was originally filed on May 11, 2015 (the Original Filing) for the sole purpose of filing a revised copy of Exhibit 10.2, which
inadvertently omitted language within a table in Exhibit A thereof during the EDGAR conversion process.

Other than providing the revised
Exhibit 10.2, no other changes have been made to the Original Filing. This Amendment No. 1 does not reflect events that may have occurred subsequent to the filing date of the Original Filing, and does not modify or update in any way any other
disclosure made in the Original Filing.

PART II. OTHER INFORMATION



|ITEM 6. | EXHIBITS
|------- | --------



|               |  |                                                                                                                                                                                                                                              
|-------------- |  | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|Exhibit
Number |  | Description                                                                                                                                                                                                                                  
|               | 
|3.1            |  | Fifth Amended and Restated Certificate of Incorporation of Applied Genetic Technologies Corporation (incorporated by reference to Exhibit 3.1 to the Companys Current Report on Form 8-K, event date March 26, 2014, filed on
April 1, 2014)
|               | 
|3.2            |  | Amended and Restated Bylaws of Applied Genetic Technologies Corporation (incorporated by reference to Exhibit 3.2 to the Companys Current Report on Form 8-K, event date March 26, 2014, filed on April 1, 2014)                            
|               | 
|10.1**         |  | Employment Agreement dated as of January 29, 2015 between Applied Genetic Technologies Corporation and Stephen W. Potter                                                                                                                    
|               | 
|10.2*          |  | Separation Agreement dated as of March 3, 2015 between Applied Genetic Technologies Corporation and Daniel L. Menichella                                                                                                                    
|               | 
|31.1*          |  | Rule 13a-14(a)/15d-14(a) Certification of Principal Executive Officer of Applied Genetic Technologies Corporation                                                                                                                            
|               | 
|31.2*          |  | Rule 13a-14(a)/15d-14(a) Certification of Principal Financial Officer of Applied Genetic Technologies Corporation                                                                                                                            
|               | 
|32.1**         |  | Section 1350 Certification of Principal Executive Officer and Principal Financial Officer of Applied Genetic Technologies Corporation                                                                                                        
|               | 
|101**          |  | Interactive Data Files pursuant to Rule 405 of Regulation S-T (XBRL)                                                                                                                                                                         



|* | Filed herewith.
|- | ---------------

|** | Filed on May 11, 2015 as an exhibit to the Companys Quarterly Report on Form 10-Q.
|-- | -----------------------------------------------------------------------------------

| | Management contract or compensatory plan or arrangement.
|- | --------------------------------------------------------



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SIGNATURE

Pursuant to the requirements of the Securities Exchange Act of 1934, as amended, the registrant has duly caused this report to be signed on its behalf by the
undersigned thereunto duly authorized.



APPLIED GENETIC TECHNOLOGIES CORPORATION
(Registrant)By:

/s/ Lawrence E. BullockLawrence E. BullockDate: May 12, 2015