# Patent

## Title
β-substituted γ-amino acids and analogs as chemotherapeutic agents

## Abstract

β-Substituted γ-amino acids, β-substituted γ-amino acid derivatives, and β-substituted γ-amino acid analogs and (bio)isosteres and their use as chemotherapeutic agents are disclosed. The β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres are selective LAT1/4F2hc substrates, capable of passing through the blood-brain barrier, and exhibit rapid uptake and retention in tumors expressing the LAT1/4F2hc transporter. Methods of synthesizing the β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres and methods of using the compounds for treating tumors are also disclosed. The β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres exhibit an improved selectivity toward tumor cells expressing the LAT1/4F2hc transporter and accumulate in cancerous cells when administered to a subject in vivo. The β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres exhibit an increased efficacy on a variety of tumor types.

## Background
This application is a Continuation of U.S. application Ser. No. 14/613,130 filed on Feb. 3, 2015, now allowed, which claims the benefit under 35 U.S.C. §119(e) of U.S. Provisional Application No. 61/935,235, filed on Feb. 3, 2014, which is incorporated by reference in its entirety.


FIELD
Disclosed herein are β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres and their use as therapeutic agents. The β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres are selective substrates for LAT1/4F2hc, capable of passing through the blood-brain barrier, and exhibit rapid uptake and retention in tissue such as tumors expressing the LAT1/4F2hc transporter. Pharmaceutical compositions comprising the β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and (bio)isosteres and uses thereof are also disclosed.
BACKGROUND
The ability to selectively target chemotherapy has immense value in clinical practice. Cancer is a leading cause of death in the developed world, with one in every three people developing cancer during his or her lifetime. There are many treatment options for cancer including surgery, chemotherapy, radiation therapy, immunotherapy, and monoclonal antibody treatment. Unfortunately, for many patients cancer treatment options are limited and response rates remain low.
Surgery is the oldest effective form of tumor therapy and can often result in a complete cure, depending of the type and nature of the tumor. Many tumors, however, occur in locations and/or number that make surgery impossible or impractical. Also, surgical debulking is not guaranteed to remove all abnormal cells, particularly in the case of tumors located in the brain where maximum preservation of normal tissue is desired. Residual abnormal cells pose an increased risk of tumor re-growth and/or metastasis.
Radiation therapy is often used as an adjunct to surgery. Various types of radiation, both from external and implanted sources, have been used with some success. Low linear-energy-transfer (LET) sources, such as β-particles and γ-rays, require repeated treatments over extended periods of time to produce any significant reduction in tumor cells. High LET sources, such as neutrons, protons or α-particles, do not require oxygen to enhance their biological effectiveness. External beam therapy has been available for decades, however, significant radiation damage occurs to normal tissues, and patients often succumb to widespread radiation-induced necrosis (Laramore, et al., Cancer, 1978, 42(1), 96-103).
Chemotherapy is used in attempts to cure or palliate cancer. Small molecule chemotherapeutics target rapidly dividing cells, halting cell proliferation by interfering with DNA replication, cytoskeletal rearrangements and/or signaling pathways that promote cell growth. Disruption of cell division slows the growth of malignant cells and may also kill tumor cells by triggering apoptosis. Alkylating agents, such as bis(2-chloroethyl)amine derivatives, act by covalent interaction with nucleophilic heteroatoms in DNA or proteins. It is believed that these difunctional agents are able to crosslink a DNA chain within a double helix in an intrastrand or interstrand fashion, or to crosslink between DNA, proteins or other vital macromolecules. The crosslinking results in inhibitory effects on DNA replication and transcription with subsequent cell death. Since these drugs also indiscriminately kill normal populations of rapidly proliferating cells, such as those found in the immune system and in the gastrointestinal tract, side effects that limit tolerated doses, are common.
The harsh side effects and the ultimate failure of most chemotherapy regimens have motivated investigation of alternatives, including drugs that target specifically tumor cells. Normal cells and tumor cells differ markedly in nutrient and energy metabolism, a phenomenon known as the Warburg effect (Ganapathy, et al., Pharmacol Ther, 2009, 121(1), 29-40; and Vander Heiden, et al., Science, 2009, 324(5930), 1029-1033). Enhanced proliferation in tumor cells places increased demand for nutrients to serve as building blocks for the biosynthesis of macromolecules and as sources of energy. Tumor-selective nutrient accumulation is most clearly evident in imaging studies of human tumors using positron emission tomography (PET) and [18F]-fluorodeoxyglucose (FDG). FDG accumulates at high levels in many kinds of solid tumors and is thought to be taken up into tumor cells by sugar transporters. Amino acids are the primary source of cellular nitrogen, used for nucleotide, glutathione, amino sugar, and protein synthesis. In addition, tumors often utilize the carbon skeletons of amino acids as an oxidative fuel source for ATP generation in addition to glucose and fatty acids (Baggetto and Biochimie, 1992, 74(11), 959-974; Mazurek and Eigenbrodt, 2003, Anticancer Res, 2003, 23(2A), 1149-1154; and DeBerardinis, et al., Proc Natl Acad Sci USA, 2007, 104(49), 19345-19350). Therefore, tumor cells must express select specific transporters to satisfy maintenance and growth requirements for nutritional amino acids. To compete with surrounding tissue for nutrients, tumor cells up-regulate levels of certain transporters to allow for more efficient extraction of nutrients than that of the host tissue.
Amino acid transport across the plasma membrane in mammalian cells is mediated by different transport “systems” such as the sodium-dependent systems A, ASC and N, and sodium-independent system L (Christensen, Phys Rev, 1990, 70, 43-77). System L is a ubiquitous plasma membrane amino acid transport system that is characterized by the sodium-independent uptake of bulky, hydrophobic amino acids and its high affinity interaction with 2-amino-bicyclo[2,2,1]heptane-2-carboxylic acid (BCH). System L activity is presently attributed to four sodium-independent transporters (LAT1-4). However, most cancers over-express only one member, the large amino acid transporter 1 (LAT1/4F2hc). This transporter is a heterodimer consisting of a light chain (LAT1) that constitutes the transporter and a heavy chain 4F2hc (also known as CD98, or Tumor Antigene TA1) that is required for proper targeting of the light chain to the plasma membrane. The expression and activity of LAT1/4F2hc correlates with cell proliferation and cancer growth; and up-regulation of LAT1/4F2hc has been observed, for example, in cancers of brain, colon, lung, liver, pancreas, and skin (Jager, et al., J Nucl Med, 1998, 39(10), 1736-1743; Ohkame, et al., J Surg Oncol, 2001, 78(4), 265-267; Tamai, et al., Cancer Detect Prev, 2001, 25(5), 439-445; Kim, et al., Anticancer Res, 2004, 24(3a), 1671-1675; Kobayashi, et al., Neurosurgery, 2008, 62(2), 493-503; Imai, et al., Histopathology, 2009, 54(7), 804-813; and Kaira, et al., 2009, Lung Cancer, 66(1), 120-126). Furthermore, the expression of LAT1/4F2hc has been used as an independent factor to predict poor prognoses in patients with astrocytic brain tumors, lung cancer, and prostate cancer (Nawashiro, et al., Int J Canc, 2006, 119(3), 484-492; Kaira, et al., Lung Cancer, 2009, 66(1), 120-126; Kaira, et al., Cancer Sci, 2008, 99(12), 2380-2386; and Sakata, et al., Pathol Int, 2009, 59(1), 7-18). Inhibition of LAT1/4F2hc-mediated transport with non-metabolizable amino acids such as BCH can reduce growth and induce apoptosis in cancer cells in vitro (Kim, et al., Biol Pharm Bull, 2008, 31(6), 1096-1100; Shennan and Thomson, Oncol Rep, 2008, 20(4), 885-889; and Kaji, et al., Int J Gynecol Cancer, 2010, 20(3), 329-336). Clinical studies have shown that the specificity and positive predictive value of L-[3-18F]-α-methyltyrosine ([18F]-FAMT) PET is superior to [18F]-FDG PET. The uptake of [18F]-FAMT in tumors has been closely correlated with LAT1 expression (Haase, et al., J Nucl Med, 2007, 48(12), 2063-2071; Kaira, et al., Clin Cancer Res, 2007, 13(21), 6369-6378; and Urakami, et al., Nucl Med Biol, 2009, 36(3), 295-303).
In particular, melphalan is an effective chemotherapy drug used in treating multiple myeloma, ovarian cancer, retinoblastoma, and other hematopoietic tumors. However, substrates such as gabapentin are reported to be transported much more rapidly than melphalan (Uchino, et al., Mol Pharmacol 2002, 61(4), 729-737). It is widely believed that uptake of melphalan (Alkeran®, otherwise known as L-Phenylalanine Mustard, or L-PAM) into cells is mediated by amino acid transporters. Melphalan is an alkylating agent linked to the essential amino acid phenylalanine. Because normal cells and tumor cells differ markedly in nutrient and energy metabolism (Warburg effect) (Vander Heiden, et al., Science, 2009, 324(5930), 1029-1033), melphalan was introduced into clinical practice with the expectation that it would preferentially accumulate in rapidly dividing tumor cells compared to normal cells, thereby increasing its overall therapeutic index. Surprisingly, melphalan caused many of the same side effects as other conventional alkylation agents, including myelosuppression. In a series of publications, Vistica et al. examined melphalan transport in different cell types and identified two independent transport systems for melphalan. One system, presumed to be System L, is characterized by the sodium-independent uptake of bulky, hydrophobic amino acids and its sensitivity toward inhibition with 2-amino-bicyclo[2,2,1]heptane-2-carboxylic acid (BCH) (Vistica, Biochim Biophys Acta, 1979, 550(2), 309-317). A second transport system is sodium-dependent, exhibits its highest affinity for leucine, but is insensitive to both BCH and the system A-specific inhibitor α-amino-isobutyric acid (AlB) (Vistica, Biochim Biophys Acta, 1979, 550(2), 309-317). Although LAT1 is overexpressed on the cell surface of almost all tumor cells regardless of the tissue of origin, response rates to melphalan are low for most cancer types, and the drug is only approved for the treatment of multiple myeloma and ovarian cancer. Melphalan is a poor substrate for LAT1 compared to other large amino acids such as phenylalanine and leucine (Uchino, et al., Mol Pharmacol 2002, 61(4), 729-737; and Hosoya, et al., Biol Pharm Bull, 2008, 31(11), 2126-2130). Nitrogen mustard derivatives with higher selectivity toward the LAT1/4F2hc system could reduce side effects associated with nitrogen mustard therapy, allow for an increase in dose, and extend the use into other areas of cancer treatment.
Although the potential for active transport strategies for increasing drug uptake into tumor cells is known and generally accepted, chemotherapeutics and tumor imaging agents have in general not been optimized for transporters known to be over-expressed in tumor cells. While the general concept of using LAT1/2Fhc-selective compounds to deliver therapeutic agents to tumors is appreciated, the existing art gives no guidance as to how one prepares a composition that exploits LAT1/4F2hc selective compounds. Thus, there is a need for new therapeutic agents that are more selective toward LAT1/4F2hc.
Several amino acid-related drugs that are substrates of the LAT1/4F2hc transporter are known, including L-Dopa, 3-O-methyldopa, droxidopa, carbidopa, 3,3′,5′-triiodothyronine, thyroxine, gabapentin, and melphalan (Uchino, et al., Mol Pharm 2002, 61(4), 729-737; and del Amo et al., Eur J Pharm Sci, 2008, 35(3), 161-174).
SUMMARY
Differentiation of malignant cancer tissue from neighboring nonmalignant tissue can be accomplished by exploiting changes in biochemical fluxes that occur in response to metabolic, genetic, and/or microstructural changes in the malignant cells. Compounds provided by the present disclosure substantially improve chemotherapy of tissue expressing the LAT1/4F2hc transporter including malignant tumors. The β-substituted γ-amino acid derivatives, β-substituted γ-amino acid analogs, and β-substituted γ-amino acid carboxylic acid (bio)isosteres provided by the present disclosure provide greater uptake selectivity for the target tissue or cells expressing the LAT1/4F2hc transporter with low non-specific uptake for non-target tissues or cells.
Embodiments provided by the present disclosure provide novel β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs, and methods of using such derivatives, for example, as chemotherapeutic agents. Certain embodiments further relate to methods of synthesizing β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs and to pharmaceutical compositions comprising such derivatives. The β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs provided by the present disclosure exhibit selectivity for LAT1/4F2hc and therefore accumulate in cancerous cells when administered to a subject in vivo. Advantages provided by compounds of the present disclosure reflect the properties of LAT1/4F2hc substrates, namely, blood brain-barrier (BBB) permeability, rapid uptake, and prolonged retention in tumors and further serve as chemotherapeutic agents with improved therapeutic index and safety.
In a first aspect, compounds of Formula (1) are provided:




or a pharmaceutically acceptable salt thereof, wherein:
at least one of R1 and R5 is independently selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(OR10)(R10), —NO2, —NO, —N(R10)(S(═O)R10), —N(R10)(S(═O)2R10), N(R10)(C(O)R10), —N(R10)(C(O)OR10), —N(R10)(C(O)N(R10)2, —CN, —COOR10, —CON(R10)2, —OH, —SH, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, —S(O)N(R10)2, —S(O)2N(R10)2, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C1-6 alkyl, substituted C1-6 alkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C3-6 cycloalkyloxy, substituted C3-6 cycloalkyloxy, C4-12 cycloalkylalkyl, substituted C4-12 cycloalkylalkyl, C6-10 aryl, substituted C6-10 aryl, C7-16 arylalkyl, substituted C7-16 arylalkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C3-6 heterocycloalkyl, substituted C3-6 heterocycloalkyl, C4-12 heterocycloalkylalkyl, substituted C4-12 heterocycloalkylalkyl, C5-10 heteroaryl, substituted C5-10 heteroaryl, C6-16 heteroarylalkyl, and substituted C6-16 heteroarylalkyl;
one of R1, R2, R3, R4, and R5 comprises a chemotherapeutic moiety;
each of the other of R1, R2, R3, R4, and R5 is independently selected from hydrogen, deuterio, halogen, —OH, —N(R10)2, —NO2, —NO, —CN, —COOR10, —CON(R10)2, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-6 alkyl, substituted C1-6 alkyl, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C4-8 cycloalkylalkyl, and C4-8 cycloalkylheteroalkyl;
R6 is selected from a carboxylic acid (—COOH), a carboxylic acid analog, and a carboxylic acid (bio)isostere;
each R7 is independently selected from hydrogen, deuterio, halogen, hydroxyl, C1-6 alkyl, C3-6 cycloalkyl, benzyl, and phenyl; or two R7 together with the carbon to which they are bonded form a ring selected from a C3-6 cycloalkyl ring and a C3-6 heterocycloalkyl ring;
R8 is selected from hydrogen, deuterio, halogen, C1-6 alkyl, substituted C1-6 alkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C3-6 cycloalkyloxy, substituted C3-6 cycloalkyloxy, —OH, —COOR10, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-6 cycloalkyl, and phenyl;
each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring; and
L is -(X)a-, wherein,

    
    
        each X is independently selected from a bond (“—”), —C(R16)2—, wherein each R16 is independently selected from hydrogen, deuterio, halogen, hydroxyl, C1-4 alkyl, and C1-4 alkoxy, or two R16 together with the carbon to which they are bonded form a C3-6 cycloalkyl ring or a C3-6 heterocycloalkyl ring, —O—, —S—, —SO—, —SO2—, —CO—, and —N(R17)—, wherein R17 is selected from hydrogen and C1-4 alkyl; and
        a is selected from 0, 1, 2, 3, and 4.
    
    


In a second aspect, chemotherapeutic moieties are provided, comprising a chemotherapeutic moiety of chemotherapeutic drugs known in the art that retains cytotoxic activity when bonded through a spacing moiety, e.g., an aryl ring and a linker L, to a γ-amino acid derivative, γ-amino acid analog, or γ-amino acid carboxylic acid (bio)isostere as a LAT1 recognition element provided by the present disclosure. The conjugate or fusion product of the chemotherapeutic moiety with the γ-amino acid derivative, γ-amino acid analog, or γ-amino acid carboxylic acid (bio)isostere is a selective substrate for the LAT1/4F2hc transporter.
In a third aspect, chemotherapeutic moieties are provided wherein the chemotherapeutic moiety is selected from a nitrogen mustard —N(—CR2—CR2—X)2, a N-monoalkyl or N,N-dialkyl triazene (—N═N—NR2), a haloacetamide (—NR—CO—CH2—X), an epoxide (—CROCR—R), an aziridine (—NC2H4), a Michael acceptor (—CR═CR-EWG-), a sulfonate or a bissulfonate ester (—OSO2R or ROSO2—), an N-nitrosourea (—NR—CO—N(NO)R), a bissulfonyl hydrazine (R′′SO2—NR—N(—)—SO2R′′′, —SO2—NR—NR′—SO2R′′′, or R′′SO2—NR—NR′—SO2—), a phosphoramidate (—O—P(═O)(N(R)—CH2—CH2—X)2 or —O—P(═O)(N(—CH2—CH2—X)2)2, and a radionuclide such as, for example, 131-iodine (131[I]-) or 211-astatine (211[At]-).
In a fourth aspect, chemotherapeutic moieties of Formula (2) are provided:




wherein,
A is selected from a bond (“—”), oxygen (—O—), sulfur (—S—), amino (—NR10, methylene (—CH2—), methyleneoxy (—CH2—O—), oxycarbonyl (—O—C(═O)—), thiocarbonyl (—S—C(═O)—), aminocarbonyl (—NR10—C(═O)—), oxythiocarbonyl (—O—C(═S)—), thiothiocarbonyl (—S—C(═S)—), aminothiocarbonyl (—NR10—C(═S)—), methyleneoxycarbonyl (—CH2—O—C(═O)—), methylenethiocarbonyl (—CH2—S—C(═O)—), methyleneaminocarbonyl (—CH2—NR10—C(═O)—), methyleneoxythiocarbonyl (—CH2—O—C(═S)—), methylenethiothiocarbonyl (—CH2—S—C(═S)—), methyleneaminothiocarbonyl (—CH2—NR10—C(═S)—), carbonyl (—C(═O)—), methylencarbonyl (—CH2—C(═O)—), thiocarbonyl (—C(═S)—), and methylenthiocarbonyl (—CH2—C(═S)—);
Z is selected from a bond (“—”) and oxygen (—O—);
Q is selected from —O− (a negatively charged oxygen atom) that is bound to a positively charged nitrogen atom) and a free electron pair (:), with the proviso that when Q is —O− (a negatively charged oxygen atom that is bound to a positively charged nitrogen atom), A is selected from a bond (“—”) and methylene (—CH2—), Z is a bond (“—”), and the chemotherapeutic moiety of Formula (2) is an N-oxide (-A-N+(—O−)(—C(R11)2—C(R11)2—R9)2);
each R11 is independently selected from hydrogen, deuterio, and C1-3 alkyl; and
each R9 is independently selected from fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl), and (substituted) aryl sulfonate (—OSO2R40, wherein R40 is selected from C6-10 aryl).
In a fifth aspect, pharmaceutical compositions are provided comprising a compound of Formula (1) and at least one pharmaceutically acceptable vehicle.
In a sixth aspect, methods for treating cancer in a patient comprising, administering a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) to a patient in need of such treatment comprising administering a therapeutically effective amount of the compound to the patient are provided.


DETAILED DESCRIPTION
Definitions
A dash (“-”) that is not between two letters or symbols is used to indicate a point of attachment for a moiety or substituent. For example, —CONH2 is attached through the carbon atom.
“Alkyl” refers to a saturated or unsaturated, branched, or straight-chain, monovalent hydrocarbon radical derived by the removal of one hydrogen atom from a single carbon atom of a parent alkane, alkene, or alkyne. Examples of alkyl groups include methyl; ethyls such as ethanyl, ethenyl, and ethynyl; propyls such as propan-1-yl, propan-2-yl, prop-1-en-1-yl, prop-1-en-2-yl, prop-2-en-1-yl (allyl), prop-1-yn-1-yl, prop-2-yn-1-yl, etc.; butyls such as butan-1-yl, butan-2-yl, 2-methyl-propan-1-yl, 2-methyl-propan-2-yl, but-1-en-1-yl, but-1-en-2-yl, 2-methyl-prop-1-en-1-yl, but-2-en-1-yl, but-2-en-2-yl, buta-1,3-dien-1-yl, buta-1,3-dien-2-yl, but-1-yn-1-yl, but-1-yn-3-yl, but-3-yn-1-yl, etc.; and the like. The term “alkyl” is specifically intended to include groups having any degree or level of saturation, i.e., groups having exclusively carbon-carbon single bonds, groups having one or more carbon-carbon double bonds, groups having one or more carbon-carbon triple bonds, and groups having combinations of carbon-carbon single, double, and triple bonds. Where a specific level of saturation is intended, the terms alkanyl, alkenyl, and alkynyl are used. In certain embodiments, an alkyl group is C1-6 alkyl, C1-5 alkyl, C1-4 alkyl, C1-3 alkyl, and in certain embodiments, ethyl or methyl.
“Alkylsulfanyl” also referred to as “alkylthio”, refers to a radical —SR where R is alkyl or cycloalkyl as defined herein. Examples of alkylsulfanyl groups include methylsulfanyl, ethylsulfanyl, propylsulfanyl, isopropylsulfanyl, butylsulfanyl, and cyclohexylsulfanyl. In certain embodiments, an alkylsulfanyl group is C1-6 alkylsulfanyl, in certain embodiments, C1-5 alkylsulfanyl, in certain embodiments, C1-4 alkylsulfanyl, in certain embodiments, C1-3 alkylsulfanyl, in certain embodiments, ethylsulfanyl (ethylthio), and in certain embodiments, methylsulfanyl (methylthio).
“Alkylsulfinyl” refers to a radical —S(O)R where R is alkyl or cycloalkyl as defined herein. Examples of alkylsulfinyl groups include methylsulfinyl, ethylsulfinyl, propylsulfinyl, isopropylsulfinyl, butylsulfinyl, and cyclohexylsulfinyl. In certain embodiments, an alkylsulfinyl group is C1-6 alkylsulfinyl, in certain embodiments, C1-5 alkylsulfinyl, in certain embodiments, C1-4 alkylsulfinyl, in certain embodiments, C1-3 alkylsulfinyl, in certain embodiments, ethylsulfinyl, and in certain embodiments, methylsulfinyl.
“Alkylsulfonyl” refers to a radical —S(O)2R where R is alkyl or cycloalkyl as defined herein. Examples of alkylsulfonyl groups include methylsulfonyl, ethylsulfonyl, propylsulfonyl, isopropylsulfonyl, butylsulfonyl, and cyclohexylsulfonyl. In certain embodiments, an alkylsulfonyl group is C1-6 alkylsulfonyl, in certain embodiments, C1-5 alkylsulfonyl, in certain embodiments, C1-4 alkylsulfonyl, in certain embodiments, C1-3 alkylsulfonyl, in certain embodiments, ethylsulfonyl, and in certain embodiments, methylsulfonyl.
“Alkoxy” refers to a radical —OR where R is alkyl as defined herein. Examples of alkoxy groups include methoxy, ethoxy, propoxy, and butoxy. In certain embodiments, an alkoxy group is C1-6 alkoxy, in certain embodiments, C1-5 alkoxy, in certain embodiments, C1-4 alkoxy, in certain embodiments, C1-3 alkoxy, and in certain embodiments, ethoxy or methoxy.
“Aryl” by itself or as part of another substituent refers to a monovalent aromatic hydrocarbon radical derived by the removal of one hydrogen atom from a single carbon atom of a parent aromatic ring system. Aryl encompasses 5- and 6-membered carbocyclic aromatic rings, for example, benzene; bicyclic ring systems wherein at least one ring is carbocyclic and aromatic, for example, naphthalene, indane, and tetralin; and tricyclic ring systems wherein at least one ring is carbocyclic and aromatic, for example, fluorene. Aryl encompasses multiple ring systems having at least one carbocyclic aromatic ring fused to at least one carbocyclic aromatic ring, cycloalkyl ring, or heterocycloalkyl ring. For example, aryl includes a phenyl ring fused to a 5- to 7-membered heterocycloalkyl ring containing one or more heteroatoms selected from N, O, and S. For such fused, bicyclic ring systems wherein only one of the rings is a carbocyclic aromatic ring, the radical carbon atom may be at the carbocyclic aromatic ring or at the heterocycloalkyl ring. Examples of aryl groups include groups derived from aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, benzene, chrysene, coronene, fluoranthene, fluorene, hexacene, hexaphene, hexalene, as-indacene, s-indacene, indane, indene, naphthalene, octacene, octaphene, octalene, ovalene, pentacene, pentalene, pentaphene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene, rubicene, triphenylene, trinaphthalene, and the like. In certain embodiments, an aryl group is C6-10 aryl, C6-9 aryl, C6-8 aryl, and in certain embodiments, phenyl. Aryl, however, does not encompass or overlap in any way with heteroaryl, separately defined herein.
“Arylalkyl” refers to an acyclic alkyl radical in which one of the hydrogen atoms bonded to a carbon atom is replaced with an aryl group. Examples of arylalkyl groups include benzyl, 2-phenylethan-1-yl, 2-phenylethen-1-yl, naphthylmethyl, 2-naphthylethan-1-yl, 2-naphthylethen-1-yl, naphthobenzyl, 2-naphthophenylethan-1-yl and the like. Where specific alkyl moieties are intended, the nomenclature arylalkanyl, arylalkenyl, or arylalkynyl is used. In certain embodiments, an arylalkyl group is C7-16 arylalkyl, e.g., the alkanyl, alkenyl or alkynyl moiety of the arylalkyl group is C1-6 and the aryl moiety is C6-10, in certain embodiments, an arylalkyl group is C7-16 arylalkyl, e.g., the alkanyl, alkenyl or alkynyl moiety of the arylalkyl group is C1-6 and the aryl moiety is C6-10. In certain embodiments an arylalkyl group is C7-9 arylalkyl, wherein the alkyl moiety is C1-3 alkyl and the aryl moiety is phenyl. In certain embodiments, an arylalkyl group is C7-16 arylalkyl, C7-14 arylalkyl, C7-12 arylalkyl, C7-10 arylalkyl, C7-8 arylalkyl, and in certain embodiments, benzyl.
Bioisosteres are atoms or molecules that fit the broadest definition for isosteres. The concept of bioisosterism is based on the notion that single atom, groups, moieties, or whole molecules, which have chemical and physical similarities produce similar biological effects. A bioisostere of a parent compound can still be recognized and accepted by its appropriate target, but its functions will be altered as compared to the parent molecule. Parameters affected with bioisosteric replacements include, for example, size, conformation, inductive and mesomeric effects, polarizability, capacity for electrostatic interactions, charge distribution, H-bond formation capacity, pKa (acidity), solubility, hydrophobicity, lipophilicity, hydrophilicity, polarity, potency, selectivity, reactivity, or chemical and metabolic stability, ADME (absorption, distribution, metabolism, and excretion). Although common in pharmaceuticals, carboxyl groups or carboxylic acid functional groups (—CO2H) in a parent molecule may be replaced with a suitable surrogate or (bio)isostere to overcome chemical or biological shortcomings while retaining the desired attributes of the parent molecule bearing one or more carboxyl groups or carboxylic acid functional groups (—CO2H). Examples of suitable surrogates or (bio)isosteres of carboxyl groups or carboxylic acid functional groups (—CO2H) include hydroxamic acids (—CONR12OH); boronic acids (—B(OH)(OR12), phosphinic acids or derivatives thereof (—PO(OH)R12), phosphonic acid or derivatives thereof (—PO(OH)(OR12), sulfinic acid (—SOOH), sulfonic acid (—SO2OH), sulfonamide (—SO2NHR12 or —NHSO2R12), sulfonimide or acyl sulfonimide (—SO2NHCOR12 or —CONHSO2R12), sulfonylureas (—SO2NHCONHR12 or —NHCONHSO2R12), amide (—CONHR12 or —NHCOR12), wherein R12 in any of the foregoing is selected from hydrogen, C1-6 alkyl, C1-4 fluoroalkyl, C3-6 cycloalkyl, and C6-10 aryl, acylcyanamide (—CONHCN); 2,2,2-trifluoroethan-1-ols (—CH(CF3)OH), 2,2,2-trifluoromethyl ketones and hydrates thereof (—COCF3 and —C(OH)2CF3), acidic heterocycles and their annular tautomers such as, for example, tetrazole, 5-oxo-1,2,4-oxadiazole, 5-oxo-1,2,4-thiadiazole, 5-thioxo-1,2,4-oxadiazole, thiazolidinedione, oxazolidinedione, oxadiazolidinedione, 3-hydroxyisoxazole, 3-hydroxyisothiazole, 1-hydroxy-imidazole, 1-hydroxy-pyrazole, 1-hydroxy-triazole, 1H-imidazol-2-ol, tetrazole-5-thiol, 3-hydroxyquinolin-2-ones, 4-hydroxyquinolin-2-ones, tetronic acid, tetramic acid, mercaptoazoles such as sulfanyl-1H-imidazole, sulfinyl-1H-imidazole, sulfonyl-1H-imidazole, sulfanyl-1H-triazole, sulfinyl-1H-triazole, sulfonyl-1H-triazole, sulfanyl-1H-1,2,4-triazole, sulfinyl-1H-1,2,4-triazole, sulfonyl-1H-1,2,4-triazole, sulfanyl-1,4-dihydro-1,2,4-triazol-5-one, sulfinyl-1,4-dihydro-1,2,4-triazol-5-one, sulfonyl-1,4-dihydro-1,2,4-triazol-5-one, sulfanyl 1H-tetrazole, sulfanyl 2H-tetrazole, sulfinyl 1H-tetrazole, sulfinyl 2H-tetrazole, sulfonyl 1H-tetrazole, sulfonyl 2H-tetrazole, or sulfonimidamides; and acidic oxocarbocycles or cyclic polyones and their resonance forms such as, for example, cyclopentane-1,3-diones, squaric acids, squareamides, mixed squaramates, or 2,6-difluorophenols.
“Compounds” of Formula (1) disclosed herein include any specific compounds within these formulae. Compounds may be identified either by their chemical structure and/or chemical name. Compounds are named using the ChemDraw Ultra 12.0 (CambridgeSoft, Cambridge, Mass.) nomenclature program. When the chemical structure and chemical name conflict the chemical structure is determinative of the identity of the compound. The compounds described herein may comprise one or more stereogenic centers and/or double bonds and therefore may exist as stereoisomers such as double-bond isomers (i.e., geometric isomers), enantiomers, diastereomers, or atropisomers. Accordingly, any chemical structures within the scope of the specification depicted, in whole or in part, with a relative configuration encompass all possible enantiomers and stereoisomers of the illustrated compounds including the stereoisomerically pure form (e.g., geometrically pure, enantiomerically pure, or diastereomerically pure) and enantiomeric and stereoisomeric mixtures. Enantiomeric and stereoisomeric mixtures may be resolved into their component enantiomers or stereoisomers using separation techniques or chiral synthesis techniques well known to the skilled artisan.
Compounds of Formula (1) include optical isomers of compounds of Formula (1), racemates thereof, and other mixtures thereof. In such embodiments, the single enantiomers or diastereomers may be obtained by asymmetric synthesis or by resolution of the racemates. Resolution of the racemates may be accomplished, for example, by conventional methods such as crystallization in the presence of a resolving agent, or chromatography, using, for example a chiral high-pressure liquid chromatography (HPLC) column with chiral stationary phases. In addition, compounds of Formula (1) include (Z)- and (E)-forms (or cis- and trans-forms) of compounds with double bonds either as single geometric isomers or mixtures thereof.
Compounds of Formula (1) may also exist in several tautomeric forms including the enol form, the keto form, and mixtures thereof. Accordingly, the chemical structures depicted herein encompass all possible tautomeric forms of the illustrated compounds. Compounds may exist in unsolvated forms as well as solvated forms, including hydrated forms. Certain compounds may exist in multiple crystalline, co-crystalline, or amorphous forms. Compounds of Formula (1) include pharmaceutically acceptable salts thereof, or pharmaceutically acceptable solvates of the free acid form of any of the foregoing, as well as crystalline forms of any of the foregoing
Compounds of Formula (1) are also referred to herein as β-substituted γ-amino acid derivatives and/or as β-substituted γ-amino acid analogs or (bio)isosteres.
“Chemotherapeutic moiety” refers to a moiety effective in treating cancer including, any of those disclosed herein. In certain embodiments, a chemotherapeutic moiety may be any suitable chemotherapeutic moiety of a chemotherapeutic drug known in the art that retains cytotoxic activity when bonded either directly or indirectly through a suitable spacing moiety to a γ-amino acid derivative, γ-amino acid analog, or γ-amino acid carboxylic acid (bio)isostere as a LAT1 recognition element provided by the present disclosure. The conjugate or fusion product of the chemotherapeutic moiety with the γ-amino acid derivative, β-amino acid analog, or β-amino acid carboxylic acid (bio)isostere is simultaneous a selective substrate for the LAT1/4F2hc transporter.
In certain embodiments, the chemotherapeutic moiety, is selected from a nitrogen mustard (—N(—CR2—CR2—X)2), a N-monoalkyl or N,N-dialkyl triazene (—N═N—NR2), a haloacetamide (—NR—CO—CH2—X), an epoxide (—CROCR—R), an aziridine (—NC2H4), a Michael acceptor (—CR═CR-EWG-), a sulfonate or a bissulfonate ester (—OSO2R or ROSO2—), an N-nitrosourea (—NR—CO—N(NO)R), a bissulfonyl hydrazine (R′′SO2—NR—N(—)—SO2R′′′, —SO2—NR—NR′—SO2R′′′, or R′′SO2—NR—NR′—SO2—), a phosphoramidate (—O—P(═O)(N(R)—CH2—CH2—X)2 or —O—P(═O)(N(—CH2—CH2—X)2)2, and a radionuclide such as, for example, 131-iodine (131[I]-) or 211-astatine (211[At]-).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety is a moiety Formula (2a):

-A-NQ(-Z—C(R11)2—C(R1)2—R9)(—C(R11)2—C(R11)2—R9)  (2a)

wherein,
A is selected from a bond (“—”), oxygen (—O—), sulfur (—S—), amino (—NR10—), methylene (—CH2—), methyleneoxy (—CH2—O—), oxycarbonyl (—O—C(═O)—), thiocarbonyl (—S—C(═O)—), aminocarbonyl (—NR10—C(═O)—), oxythiocarbonyl (—O—C(═S)—), thiothiocarbonyl (—S—C(═S)—), aminothiocarbonyl (—NR10—C(═S)—), methyleneoxycarbonyl (—CH2—O—C(═O)—), methylenethiocarbonyl (—CH2—S—C(═O)—), methyleneaminocarbonyl (—CH2—NR10—C(═O)—), methyleneoxythiocarbonyl (—CH2—O—C(═S)—), methylenethiothiocarbonyl (—CH2—S—C(═S)—), methyleneaminothiocarbonyl (—CH2—NR10—C(═S)—), carbonyl (—C(═O)—), methylencarbonyl (—CH2—C(═O)—), thiocarbonyl (—C(═S)—), and methylenthiocarbonyl (—CH2—C(═S)—);
Z is selected from a bond (“—”) and oxygen (—O—);
Q is selected from —O− (a negatively charged oxygen atom) that is bound to a positively charged nitrogen atom) and a free electron pair (:), with the proviso that when Q is —O− (a negatively charged oxygen atom that is bound to a positively charged nitrogen atom), A is selected from a bond (“—”) and methylene (—CH2—), Z is a bond (“—”), and the chemotherapeutic moiety of Formula (2) is an N-oxide (-A-N+(—O−)(—C(R11)2—C(R11)2—R9)2);
each R11 is independently selected from hydrogen, deuterio, and C1-3 alkyl; and
each R9 is independently selected from fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl), and (substituted) aryl sulfonate (—OSO2R40, wherein R40 is selected from C6-10 aryl).
“Cycloalkyl” refers to a saturated or partially unsaturated cyclic alkyl radical. In certain embodiments, a cycloalkyl group is C3-6 cycloalkyl, C3-5 cycloalkyl, C5-6 cycloalkyl, cyclopropyl, cyclopentyl, and in certain embodiments, cyclohexyl. In certain embodiments, cycloalkyl is selected from cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
“Cycloalkylalkyl” refers to an acyclic alkyl radical in which one of the hydrogen atoms bonded to a carbon atom is replaced with a cycloalkyl group as defined herein. Where specific alkyl moieties are intended, the nomenclature cycloalkylalkyl, cycloalkylalkenyl, or cycloalkylalkynyl is used. In certain embodiments, a cycloalkylalkyl group is C4-30 cycloalkylalkyl, e.g., the alkanyl, alkenyl, or alkynyl moiety of the cycloalkylalkyl group is C1-10 and the cycloalkyl moiety of the cycloalkylalkyl moiety is C3-20, and in certain embodiments, an cycloalkylalkyl group is C4-20 cycloalkylalkyl, e.g., the alkanyl, alkenyl, or alkynyl moiety of the cycloalkylalkyl group is C1-8 and the cycloalkyl moiety of the cycloalkylalkyl group is C3-12. In certain embodiments, cycloalkylalkyl is C4-9 cycloalkylalkyl, wherein the alkyl moiety of the cycloalkylalkyl group is C1-3 alkyl, and the cycloalkyl moiety of the cycloalkylalkyl group is C3-6 cycloalkyl. In certain embodiments, a cycloalkylalkyl group is C4-12 cycloalkylalkyl, C4-10 cycloalkylalkyl, C4-8 cycloalkylalkyl, and C4-6 cycloalkylalkyl. In certain embodiments a cycloalkylalkyl group is cyclopropylmethyl (—CH2-cyclo-C3H5), cyclopentylmethyl (—CH2-cyclo-C5H9), or cyclohexylmethyl (—CH2-cyclo-C6H11). In certain embodiments a cycloalkylalkyl group is cyclopropylethenyl (—CH═CH-cyclo-C3H5), cyclopentylethynyl (—C≡C-cyclo-C5H9), or the like.
“Cycloalkylheteroalkyl” by itself or as part of another substituent refers to a heteroalkyl group in which one or more of the carbon atoms (and certain associated hydrogen atoms) of an alkyl group are independently replaced with the same or different heteroatomic group or groups and in which one of the hydrogen atoms bonded to a carbon atom is replaced with a cycloalkyl group. Where specific alkyl moieties are intended, the nomenclature cycloalkylheteroalkanyl, cycloalkylheteroalkenyl, and cycloalkylheteroalkynyl is used. In certain embodiments of cycloalkylheteroalkyl, the heteroatomic group is selected from —O—, —S—, —NH—, —N(—CH3)—, —SO—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments the heteroatomic group is —O— or —NH—.
“Cycloalkyloxy” refers to a radical —OR where R is cycloalkyl as defined herein. Examples of cycloalkyloxy groups include cyclopropyloxy, cyclobutyloxy, cyclopentyloxy, and cyclohexyloxy. In certain embodiments, a cycloalkyloxy group is C3-6 cycloalkyloxy, in certain embodiments, C3-5 cycloalkyloxy, in certain embodiments, C5-6 cycloalkyloxy, and in certain embodiments, cyclopropyloxy, cyclobutyloxy, cyclopentyloxy, or cyclohexyloxy.
“Disease” refers to a disease, disorder, condition, or symptom of any of the foregoing.
“Fluoroalkyl” refers to an alkyl group as defined herein in which one or more of the hydrogen atoms is replaced with a fluoro. In certain embodiments, a fluoroalkyl group is C1-6 fluoroalkyl, C1-5 fluoroalkyl, C1-4 fluoroalkyl, C1-3 fluoroalkyl. In certain embodiments, the fluoroalkyl group is pentafluoroethyl (—CF2CF3), in certain embodiments, trifluoromethyl (—CF3).
“Fluoroalkoxy” refers to an alkoxy group as defined herein in which one or more of the hydrogen atoms is replaced with a fluoro. In certain embodiments, a fluoroalkoxy group is C1-6 fluoroalkoxy, C1-5 fluoroalkoxy, C1-4 fluoroalkoxy C1-3 fluoroalkoxy, and in certain embodiments, —OCF2CF3 or —OCF3.
“β-Substituted γ-amino acid derivative” refers to β-substituted γ-amino acid derivatives having a carboxyl group.
“β-Substituted γ-amino acid analog” refers to β-substituted γ-amino acid derivatives in which the carboxyl group is replaced with a phosphinic acid group, a sulfinic acid group, a 1H-tetrazole, or any of the other suitable carboxylic acid (bio)isosteres as defined herein, e.g., 3-aminopropylphosphinic acids, 3-aminopropylsulfinic acids, and others.
“Halogen” refers to a fluoro, chloro, bromo, or iodo group.
“Heteroalkoxy” refers to an alkoxy group in which one or more of the carbon atoms are replaced with a heteroatom. In certain embodiments, the heteroalkoxy group is C1-6 heteroalkoxy, in certain embodiments, C1-5 heteroalkoxy, in certain embodiments, C1-4 heteroalkoxy, and in certain embodiments, C1-3 heteroalkoxy. In certain embodiments of heteroalkoxy, the heteroatomic group is selected from —O—, —S—, —NH—, —NR—, —SO2—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments the heteroatomic group is —O— and —NH—. In certain embodiments, a heteroalkoxy group is C1-6 heteroalkoxy, C1-5 heteroalkoxy, C1-4 heteroalkoxy, and in certain embodiments C1-3 heteroalkoxy.
“Heteroalkyl” by itself or as part of another substituent refer to an alkyl group in which one or more of the carbon atoms (and certain associated hydrogen atoms) are independently replaced with the same or different heteroatomic group or groups. Examples of heteroatomic groups include —O—, —S—, —NH—, —NR—, —O—O—, —S—S—, ═N—N═, —N═N—, —N═N—NR—, —PR—, —P(O)OR—, —P(O)R—, —POR—, —SO—, —SO2—, —Sn(R)2—, and the like, where each R is independently selected from hydrogen, C1-6 alkyl, substituted C1-6 alkyl, C6-12 aryl, substituted C6-12 aryl, C7-18 arylalkyl, substituted C7-18 arylalkyl, C3-7 cycloalkyl, substituted C3-7 cycloalkyl, C3-7 heterocycloalkyl, substituted C3-7 heterocycloalkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C6-12 heteroaryl, substituted C6-12 heteroaryl, C7-18 heteroarylalkyl, and substituted C7-18 heteroarylalkyl. In certain embodiments, each R is independently selected from hydrogen and C1-3 alkyl. Reference to, for example, a C1-6 heteroalkyl, means a C1-6 alkyl group in which at least one of the carbon atoms (and certain associated hydrogen atoms) is replaced with a heteroatom. For example, C1-6 heteroalkyl includes groups having five carbon atoms and one heteroatom, groups having four carbon atoms and two heteroatoms, etc. In certain embodiments of heteroalkyl, the heteroatomic group is selected from —O—, —S—, —NH—, —N(—CH3)—, —SO—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments, the heteroatomic group is —O— and —NH—. In certain embodiments, a heteroalkyl group is C1-6 heteroalkyl, C1-5 heteroalkyl, C1-4 heteroalkyl, and in certain embodiments C1-3 heteroalkyl.
“Heteroaryl” by itself or as part of another substituent refers to a monovalent heteroaromatic radical derived by the removal of one hydrogen atom from a single atom of a parent heteroaromatic ring system. Heteroaryl encompasses multiple ring systems having at least one heteroaromatic ring fused to at least one other ring, which may be aromatic or non-aromatic. For example, heteroaryl encompasses bicyclic rings in which one ring is heteroaromatic and the second ring is a heterocycloalkyl ring. For such fused, bicyclic heteroaryl ring systems wherein only one of the rings contains one or more heteroatoms, the radical carbon may be at the aromatic ring or at the heterocycloalkyl ring. In certain embodiments, when the total number of N, S, and O atoms in the heteroaryl group exceeds one, the heteroatoms may or may not be adjacent to one another. In certain embodiments, the total number of heteroatoms in the heteroaryl group is not more than two. In certain embodiments of heteroaryl, the heteroatomic group is selected from —O—, —S—, —NH—, —N(—CH3)—, —SO—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments the heteroatomic group is —O— or —NH—. In certain embodiments, a heteroaryl group is selected from C5-10 heteroaryl, C5-9 heteroaryl, C5-8 heteroaryl, C5-7 heteroaryl, C5-6 heteroaryl, and in certain embodiments, is C5 heteroaryl or C6 heteroaryl.
Examples of heteroaryl groups include groups derived from acridine, arsindole, carbazole, α-carboline, chromane, chromene, cinnoline, furan, imidazole, indazole, indole, indoline, indolizine, isobenzofuran, isochromene, isoindole, isoindoline, isoquinoline, isothiazole, isoxazole, naphthyridine, oxadiazole, oxazole, perimidine, phenanthridine, phenanthroline, phenazine, phthalazine, pteridine, purine, pyran, pyrazine, pyrazole, pyridazine, pyridine, pyrimidine, pyrrole, pyrrolizine, quinazoline, quinoline, quinolizine, quinoxaline, tetrazole, thiadiazole, thiazole, thiophene, triazole, xanthene, thiazolidine, oxazolidine, and the like. In certain embodiments, heteroaryl groups are those derived from thiophene, pyrrole, benzothiophene, benzofuran, indole, pyridine, quinoline, imidazole, oxazole, or pyrazine. For example, in certain embodiments, heteroaryl is C5 heteroaryl and is selected from furyl, thienyl, pyrrolyl, imidazolyl, pyrazolyl, isothiazolyl, isoxazolyl. In certain embodiments, heteroaryl is C6 heteroaryl, and is selected from pyridinyl, pyrazinyl, pyrimidinyl, and pyridazinyl.
“Heteroarylalkyl” refers to an arylalkyl group in which one of the carbon atoms (and certain associated hydrogen atoms) is replaced with a heteroatom. In certain embodiments, a heteroarylalkyl group is C6-16 heteroarylalkyl, C6-14 heteroarylalkyl, C6-12 heteroarylalkyl, C6-10 heteroarylalkyl, C6-8 heteroarylalkyl, C7 heteroarylalkyl, and in certain embodiments, C6 heteroarylalkyl. In certain embodiments of heteroarylalkyl, the heteroatomic group is selected from —O—, —S—, —NH—, —N(—CH3)—, —SO—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments the heteroatomic group is —O— or —NH—.
“Heterocycloalkyl” by itself or as part of another substituent refers to a saturated or unsaturated cyclic alkyl radical in which one or more carbon atoms (and certain associated hydrogen atoms) are independently replaced with the same or different heteroatom; or to a parent aromatic ring system in which one or more carbon atoms (and certain associated hydrogen atoms) are independently replaced with the same or different heteroatom such that the ring system violates the Huckel-rule. Examples of heteroatoms to replace the carbon atom(s) include N, P, O, S, and Si. Examples of heterocycloalkyl groups include groups derived from epoxides, azirines, thiiranes, imidazolidine, morpholine, piperazine, piperidine, pyrazolidine, pyrrolidine, quinuclidine, and the like. In certain embodiments, heterocycloalkyl is C5 heterocycloalkyl and is selected from pyrrolidinyl, tetrahydrofuranyl, tetrahydrothiophenyl, imidazolidinyl, oxazolidinyl, thiazolidinyl, doxolanyl, and dithiolanyl. In certain embodiments, heterocycloalkyl is C6 heterocycloalkyl and is selected from piperidinyl, tetrahydropyranyl, piperizinyl, oxazinyl, dithianyl, and dioxanyl. In certain embodiments a heterocycloalkyl group is C3-6 heterocycloalkyl, C3-5 heterocycloalkyl, C5-6 heterocycloalkyl, and in certain embodiments, C5 heterocycloalkyl or C6 heterocycloalkyl. In certain embodiments of heterocycloalkyl, the heteroatomic group is selected from —O—, —S—, —NH—, —N(—CH3)—, —SO—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments the heteroatomic group is —O— or —NH—.
“Heterocycloalkylalkyl” refers to a cycloalkylalkyl group in which one or more carbon atoms (and certain associated hydrogen atoms) of the cycloalkyl ring are independently replaced with the same or different heteroatom. In certain embodiments, the heterocycloalkylalkyl is C4-12 heterocycloalkylalkyl, C4-10 heterocycloalkylalkyl, C4-8 heterocycloalkylalkyl, C4-6 heterocycloalkylalkyl, C6-7 heterocycloalkylalkyl, and in certain embodiments, C6 heterocycloalkylalkyl or C7 heterocycloalkylalkyl. In certain embodiments of heterocycloalkylalkyl, the heteroatomic group is selected from —O—, —S—, —NH—, —N(—CH3)—, —SO—, and —SO2—, in certain embodiments, the heteroatomic group is selected from —O— and —NH—, and in certain embodiments the heteroatomic group is —O— or —NH—.
“Mesyl” refers to the group —OS(O)2Me or —OMs.
“Parent aromatic ring system” refers to an unsaturated cyclic or polycyclic ring system having a cyclic conjugated π (pi) electron system with 4n+2 electrons (Hickel rule). Included within the definition of “parent aromatic ring system” are fused ring systems in which one or more of the rings are aromatic and one or more of the rings are saturated or unsaturated, such as, for example, fluorene, indane, indene, phenalene, etc. Examples of parent aromatic ring systems include aceanthrylene, acenaphthylene, acephenanthrylene, anthracene, azulene, benzene, chrysene, coronene, fluoranthene, fluorene, hexacene, hexaphene, hexalene, as-indacene, s-indacene, indane, indene, naphthalene, octacene, octaphene, octalene, ovalene, pentacene, pentalene, pentaphene, perylene, phenalene, phenanthrene, picene, pleiadene, pyrene, pyranthrene, rubicene, triphenylene, trinaphthalene, and the like.
“Parent heteroaromatic ring system” refers to an aromatic ring system in which one or more carbon atoms (and any associated hydrogen atoms) are independently replaced with the same or different heteroatom in such a way as to maintain the continuous π-electron system characteristic of aromatic systems and a number of π-electrons corresponding to the Hickel rule (4n+2). Examples of heteroatoms to replace the carbon atoms include N, P, O, S, and Si, etc. Specifically included within the definition of“parent heteroaromatic ring systems” are fused ring systems in which one or more of the rings are aromatic and one or more of the rings are saturated or unsaturated, such as, for example, arsindole, benzodioxan, benzofuran, chromane, chromene, indole, indoline, xanthene, etc. Examples of parent heteroaromatic ring systems include arsindole, carbazole, β-carboline, chromane, chromene, cinnoline, furan, imidazole, indazole, indole, indoline, indolizine, isobenzofuran, isochromene, isoindole, isoindoline, isoquinoline, isothiazole, isoxazole, naphthyridine, oxadiazole, oxazole, perimidine, phenanthridine, phenanthroline, phenazine, phthalazine, pteridine, purine, pyran, pyrazine, pyrazole, pyridazine, pyridine, pyrimidine, pyrrole, pyrrolizine, quinazoline, quinoline, quinolizine, quinoxaline, tetrazole, thiadiazole, thiazole, thiophene, triazole, xanthene, thiazolidine, oxazolidine, and the like.
“Patient” refers to a mammal, for example, a human. The term “patient” is used interchangeably with “subject.”
“Pharmaceutically acceptable” refers to approved or approvable by a regulatory agency of the Federal or a state government or listed in the U.S. Pharmacopoeia or other generally recognized pharmacopoeia for use in animals, and more particularly in humans.
“Pharmaceutically acceptable salt” refers to a salt of a compound, which possesses the desired pharmacological activity of the parent compound. Such salts include acid addition salts, formed with inorganic acids and one or more protonable functional groups such as primary, secondary, or tertiary amines within the parent compound or formed with an organic acids. Examples for inorganic acids are hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like. Examples of organic acids include acetic acid, propionic acid, hexanoic acid, cyclopentanepropionic acid, glycolic acid, pyruvic acid, lactic acid, malonic acid, succinic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, 3-(4-hydroxybenzoyl) benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethane-disulfonic acid, 2-hydroxyethanesulfonic acid, benzenesulfonic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesulfonic acid, camphorsulfonic acid, 4-methylbicyclo[2.2.2]-oct-2-ene-1-carboxylic acid, glucoheptonic acid, 3-phenylpropionic acid, trimethylacetic acid, tertiary butylacetic acid, lauryl sulfuric acid, gluconic acid, glutamic acid, hydroxynaphthoic acid, salicylic acid, stearic acid, muconic acid, and the like. In certain embodiments, a pharmaceutically acceptable salt is a salt formed when one or more acidic protons present in the parent compound are replaced by a metal ion, e.g., an alkali metal ion, an alkaline earth ion, or an aluminum ion, or combinations thereof; or coordinates with an organic base such as ethanolamine, diethanolamine, triethanolamine, N-methylglucamine, and the like. In certain embodiments, a pharmaceutically acceptable salt is the hydrochloride salt. In certain embodiments, a pharmaceutically acceptable salt is the sodium salt. In certain embodiments wherein a compound has two or more ionizable groups, a pharmaceutically acceptable salt comprises one or more counterions, such as a bi-salt, for example, a dihydrochloride salt.
The term “pharmaceutically acceptable salt” includes hydrates and other solvates, as well as salts in crystalline or non-crystalline form. Where a particular pharmaceutically acceptable salt is disclosed, it is understood that the particular salt (e.g., a hydrochloride salt) is an example of a salt, and that other salts may be formed using techniques known to one of skill in the art. Additionally, one of skill in the art would be able to convert the pharmaceutically acceptable salt to the corresponding compound, free base and/or free acid, using techniques generally known in the art. See also: Stahl and Wermuth (Editors), Handbook of Pharmaceutical Salts, Wiley-VCH, Weinheim, Germany, 2008.
“Pharmaceutically acceptable vehicle” refers to a pharmaceutically acceptable diluent, a pharmaceutically acceptable adjuvant, a pharmaceutically acceptable excipient, a pharmaceutically acceptable carrier, or a combination of any of the foregoing with which a compound provided by the present disclosure may be administered to a patient and which does not destroy the pharmacological activity thereof and which is non-toxic when administered in doses sufficient to provide a therapeutically effective amount of the compound.
“Pharmaceutical composition” refers to a compound of Formula (1) or a pharmaceutically acceptable salt thereof and at least one pharmaceutically acceptable vehicle, with which the compound of Formula (1) or a pharmaceutically acceptable salt thereof is administered to a patient. Pharmaceutically acceptable vehicles are known in the art.
“Solvate” refers to a molecular complex of a compound with one or more solvent molecules in a stoichiometric or non-stoichiometric amount. Such solvent molecules are those commonly used in the pharmaceutical arts, which are known to be innocuous to a patient, e.g., water, ethanol, and the like. A molecular complex of a compound or moiety of a compound and a solvent can be stabilized by non-covalent intra-molecular forces such as, for example, electrostatic forces, van der Waals forces, or hydrogen bonds. The term “hydrate” refers to a solvate in which the one or more solvent molecules is water.
“Substituted” refers to a group in which one or more hydrogen atoms are independently replaced with the same or different substituent(s). In certain embodiments, each substituent is independently selected from halogen, —OH, —CN, —CF3, —OCF3, ═O, —NO2, C1-6 alkoxy, C1-6 alkyl, —COOR, —NR2, and —CONR2; wherein each R is independently selected from hydrogen and C1-6 alkyl. In certain embodiments, each substituent is independently selected from halogen, —NH2, —OH, C1-3 alkoxy, and C1-3 alkyl, trifluoromethoxy, and trifluoromethyl. In certain embodiments, each substituent is independently selected from —OH, methyl, ethyl, trifluoromethyl, methoxy, ethoxy, and trifluoromethoxy. In certain embodiments, each substituent is selected from C1-3 alkyl, ═O, C1-3 alkyl, C1-3 alkoxy, and phenyl. In certain embodiments, each substituent is selected from —OH, —NH2, C1-3 alkyl, and C1-3 alkoxy.
“Treating” or “treatment” of a disease refers to arresting or ameliorating a disease or at least one of the clinical symptoms of a disease or disorder, reducing the risk of acquiring a disease or at least one of the clinical symptoms of a disease, reducing the development of a disease or at least one of the clinical symptoms of the disease or reducing the risk of developing a disease or at least one of the clinical symptoms of a disease. “Treating” or “treatment” also refers to inhibiting the disease, either physically, (e.g., stabilization of a discernible symptom), physiologically, (e.g., stabilization of a physical parameter), or both, and to inhibiting at least one physical parameter or manifestation that may or may not be discernible to the patient. In certain embodiments, “treating” or “treatment” refers to delaying the onset of the disease or at least one or more symptoms thereof in a patient who may be exposed to or predisposed to a disease or disorder even though that patient does not yet experience or display symptoms of the disease.
“Therapeutically effective amount” refers to the amount of a compound that, when administered to a subject for treating a disease, or at least one of the clinical symptoms of a disease, is sufficient to affect such treatment of the disease or symptom thereof. The “therapeutically effective amount” may vary depending, for example, on the compound, the disease and/or symptoms of the disease, severity of the disease and/or symptoms of the disease or disorder, the age, weight, and/or health of the patient to be treated, and the judgment of the prescribing physician. An appropriate amount in any given instance may be ascertained by those skilled in the art or capable of determination by routine experimentation.
“Therapeutically effective dose” refers to a dose that provides effective treatment of a disease or disorder in a patient. A therapeutically effective dose may vary from compound to compound, and from patient to patient, and may depend upon factors such as the condition of the patient and the route of delivery. A therapeutically effective dose may be determined in accordance with routine pharmacological procedures known to those skilled in the art.
“Triflyl” refers to the group —OS(O)2CF3 or —OTf.
Reference is now made in detail to certain embodiments of compounds, compositions, and methods. The disclosed embodiments are not intended to be limiting of the claims. To the contrary, the claims are intended to cover all alternatives, modifications, and equivalents.
LAT1/4F2hc Transporter
The GenBank accession number for human LAT1/4F2hc is NP_003477/NP_002385. Unless otherwise apparent from the context, reference to a transporter such as LAT1/4F2hc (as well as other transporters disclosed herein) includes the amino acid sequence described in or encoded by the GenBank reference number, and, allelic, cognate and induced variants and fragments thereof retaining essentially the same transporter activity. Usually such variants show at least 90% sequence identity to the exemplary Genbank nucleic acid or amino acid sequence. Allelic variants at the DNA level are the result of genetic variation between individuals of the same species. Some allelic variants at the DNA level that cause substitution, deletion or insertion of amino acids in proteins encoded by the DNA result in corresponding allelic variation at the protein level. Cognate forms of a gene refer to variation between structurally and functionally related genes between species. For example, the human gene showing the greatest sequence identity and closest functional relationship to a mouse gene is the human cognate form of the mouse gene.
For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. The sequence comparison algorithm enables calculation of the percent sequence identity for the test sequence(s) relative to the reference sequence, based on the designated program parameters. Optimal alignment of sequences for comparison may be conducted by methods known to those skilled in the art.
Compounds
In certain embodiments, anti-cancer agents provided by the present disclosure are compounds of Formula (1):




or a pharmaceutically acceptable salt thereof, wherein:

at least one of R1 and R5 is independently selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(OR10)(R10), —NO2, —NO, —N(R10)(S(═O)R10), —N(R10)(S(═O)2R10), —N(R10)(C(O)R10), —N(R10)(C(O)OR10), —N(R10)(C(O)N(R10)2, —CN, —COOR10, —CON(R10)2, —OH, —SH, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, —S(O)N(R10)2, —S(O)2N(R10)2, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C1-6 alkyl, substituted C1-6 alkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C3-6 cycloalkyloxy, substituted C3-6 cycloalkyloxy, C4-12 cycloalkylalkyl, substituted C4-12 cycloalkylalkyl, C6-10 aryl, substituted C6-10 aryl, C7-16 arylalkyl, substituted C7-16 arylalkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C3-6 heterocycloalkyl, substituted C3-6 heterocycloalkyl, C4-12 heterocycloalkylalkyl, substituted C4-12 heterocycloalkylalkyl, C5-10 heteroaryl, substituted C5-10 heteroaryl, C6-16 heteroarylalkyl, and substituted C6-16 heteroarylalkyl;
one of R1, R2, R3, R4, and R5 comprises a chemotherapeutic moiety;
each of the other of R1, R2, R3, R4, and R5 is independently selected from hydrogen, deuterio, halogen, —OH, —N(R10)2, —NO2, —NO, —CN, —COOR10, —CON(R10)2, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-6 alkyl, substituted C1-6 alkyl, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C4-8 cycloalkylalkyl, and C4-8 cycloalkylheteroalkyl;
R6 is selected from a carboxylic acid (—COOH), a carboxylic acid analog, and a carboxylic acid (bio)isostere;
each R7 is independently selected from hydrogen, deuterio, halogen, hydroxyl, C1-6 alkyl, C3-6 cycloalkyl, benzyl, and phenyl; or two R7 together with the carbon to which they are bonded form a ring selected from a C3-6 cycloalkyl ring and a C3-6 heterocycloalkyl ring;
R8 is selected from hydrogen, deuterio, halogen, C1-6 alkyl, substituted C1-6 alkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C3-6 cycloalkyloxy, substituted C3-6 cycloalkyloxy, —OH, —COOR10, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-6 cycloalkyl, and phenyl;
each R10 is independently selected from hydrogen, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring;
L is -(X)a-, wherein each X is independently selected from a bond (“—”), —C(R16)2—, wherein each R16 is independently selected from hydrogen, deuterio, halogen, hydroxyl, C1-4 alkyl, and C1-4 alkoxy, or two R16 together with the carbon to which they are bonded form a C3-6 cycloalkyl ring or a C3-6 heterocycloalkyl ring, —O—, —S—, —SO—, —SO2—, —CO—, and —N(R17)— wherein R17 is selected from hydrogen and C1-4 alkyl;
a is selected from 0, 1, 2, 3, and 4; and
each substituent is independently selected from halogen, —OH, —NH2, —N(R10)2, —NO2, —CF3, ═O (oxo), C1-3 alkyl, C1-3 alkoxy, and phenyl; wherein each R10 is independently selected from hydrogen and C1-3 alkyl.
In certain embodiments in compounds of Formula (1), R1 comprises a chemotherapeutic moiety, R2 comprises a chemotherapeutic moiety, R3 comprises a chemotherapeutic moiety, R4 comprises a chemotherapeutic moiety, and in certain embodiments, R5 comprises a chemotherapeutic moiety.
In certain embodiments of a compound of Formula (1), a chemotherapeutic moiety may be any suitable chemotherapeutic moiety of a chemotherapeutic drug known in the art that retains cytotoxic activity when bonded either directly or indirectly through a suitable spacing moiety, e.g., an aryl ring and a linker L, to na γ-amino acid derivative, γ-amino acid analog, or γ-amino acid carboxylic acid (bio)isostere as a LAT1 recognition element provided by the present disclosure. The conjugate or fusion product of the chemotherapeutic moiety with the γ-amino acid derivative, γ-amino acid analog, or γ-amino acid carboxylic acid (bio)isostere is simultaneous a selective substrate for the LAT1/4F2hc transporter.
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety, is selected from a nitrogen mustard (—N(—CR2—CR2—X)2), a N-monoalkyl or N,N-dialkyl triazene (—N═N—NR2), a haloacetamide (—NR—CO—CH2—X), an epoxide (—CROCR—R), an aziridine (—NC2H4), a Michael acceptor (—CR═CR-EWG-), a sulfonate or a bissulfonate ester (—OSO2R or ROSO2—), an N-nitrosourea (—NR—CO—N(NO)R), a bissulfonyl hydrazine (R′′SO2—NR—N(−)—SO2R′′′, —SO2—NR—NR′—SO2R′′′, or R′′SO2—NR—NR′—SO2—), a phosphoramidate (—O—P(═O)(N(R)—CH2—CH2—X)2 or —O—P(═O)(N(—CH2—CH2—X)2)2, and a radionuclide such as, for example, 131-iodine (131[I]-) or 211-astatine (211[At]-).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety is a moiety Formula (2):




wherein,
A is selected from a bond (“—”), oxygen (—O—), sulfur (—S—), amino (—NR10—), methylene (—CH2—), methyleneoxy (—CH2—O—), oxycarbonyl (—O—C(═O)—), thiocarbonyl (—S—C(═O)—), aminocarbonyl (—NR10—C(═O)—), oxythiocarbonyl (—O—C(═S)—), thiothiocarbonyl (—S—C(═S)—), aminothiocarbonyl (—NR10—C(═S)—), methyleneoxycarbonyl (—CH2—O—C(═O)—), methylenethiocarbonyl (—CH2—S—C(═O)—), methyleneaminocarbonyl (—CH2—NR10—C(═O)—), methyleneoxythiocarbonyl (—CH2—O—C(═S)—), methylenethiothiocarbonyl (—CH2—S—C(═S)—), methyleneaminothiocarbonyl (—CH2—NR10—C(═S)—), carbonyl (—C(═O)—), methylencarbonyl (—CH2—C(═O)—), thiocarbonyl (—C(═S)—), and methylenthiocarbonyl (—CH2—C(═S)—);
Z is selected from a bond (“—”) and oxygen (—O—);
Q is selected from —O− (a negatively charged oxygen atom) that is bound to a positively charged nitrogen atom) and a free electron pair (:), with the proviso that when Q is —O− (a negatively charged oxygen atom that is bound to a positively charged nitrogen atom), A is selected from a bond (“—”) and methylene (—CH2—), Z is a bond (“—”), and the chemotherapeutic moiety of Formula (2) is an N-oxide (-A-N+(—O−)(—C(R11)2—C(R11)2—R9)2);
each R11 is independently selected from hydrogen, deuterio, and C1-3 alkyl; and
each R9 is independently selected from fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl), and (substituted) aryl sulfonate (—OSO2R40, wherein R40 is C6-10 aryl).
In certain embodiments, a chemotherapeutic moiety of Formula (2) is selected from the structure -A-N(—Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9) and -A-N+(—O−)(—C(R11)2—C(R11)2—R9)2,
wherein A is selected from a bond (“—”), methylene (—CH2—), oxygen (—O—), methyleneoxy (—CH2—O—), oxycarbonyl (—O—C(═O)—), methyleneoxycarbonyl (—CH2—O—C(═O)—), carbonyl (—C(═O)—), and methylenecarbonyl (—CH2—C(═O)—);
each R11 is independently selected from hydrogen and deuterio; and
each R9 is independently selected from fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl), and (substituted) aryl sulfonate (—OSO2R40, wherein R40 is selected from C6-10 aryl).
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9, wherein A is a bond (“—”); Q is a free electron pair (:); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl); and the chemotherapeutic moiety is —N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is methylene (—CH2—); Q is a free electron pair (:); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4(per)fluoroalkyl); and the chemotherapeutic moiety is —CH2—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is a bond (“—”); Q is a negatively charged oxygen (—O—); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4(per)fluoroalkyl); and the chemotherapeutic moiety is —N+(—O−)(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is methylene (—CH2—); Q is a negatively charged oxygen (—O—); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4(per)fluoroalkyl); and the chemotherapeutic moiety is —CH2—N+(—O—)(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is a bond (“—”); Q is a free electron pair (:); Z is oxygen; each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl); and the chemotherapeutic moiety is —N(—O—CH2-mDm-CH2-nDn-R9)(—CH2-mDm-CH2-nDn-R9), wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is methylene (—CH2—); Q is a free electron pair (:); Z is oxygen; each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4(per)fluoroalkyl); and the chemotherapeutic moiety is —CH2—N(—O—CH2-mDm-CH2-nDn-R9)(—CH2-mDm-CH2-nDn-R9), wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is oxygen (—O—); Q is a free electron pair (:); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4(per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4(per)fluoroalkyl) and the chemotherapeutic moiety is —O—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R1)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is methyleneoxy (—CH2—O—); Q is a free electron pair (:); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4(per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4(per)fluoroalkyl); and the chemotherapeutic moiety is —CH2—O—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is a carbonyl (—CO—), Q is a free electron pair (:), Z is a bond (“—”), each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate ((—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl) and the chemotherapeutic moiety is (—CO—N(—CH2-mDm-CH2-nDn-R9)2), wherein m and n are independently selected integers of 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is methylenecarbonyl (—CH2—CO—); Q is a free electron pair (:); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl); and the chemotherapeutic moiety is —CH2—CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is oxycarbonyl (—O—CO—); Q is a free electron pair (:); Z is a bond (“—”); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), and C1-4(per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl); and the chemotherapeutic moiety is —O—CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments, a chemotherapeutic moiety of Formula (2) has the structure -A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9), wherein A is a methyleneoxycarbonyl (—CH2—O—CO—); each R11 is independently selected from hydrogen and deuterio; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40 wherein R40 is selected from C1-4 alkyl), and C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl); and the chemotherapeutic moiety is —CH2—O—CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2.
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —N+(—O−)(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—N+(—O−)(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —N(—O—CH2-mDm-CH2-nDn-R9)(—CH2-mDm-CH2-nDn-R9), wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—N(—O—CH2-mDm-CH2-nDn-R9)(—CH2-mDm-CH2-nDn-R9), wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —O—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected integers of 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—O—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —O—CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—O—CO—N(—CH2-mDm-CH2-nDn-R9)2, wherein m and n are independently selected from 0, 1, and 2; and each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —N+(—O−)(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—N+(—O—)(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —O—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—O—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —O—CO—N(—CH2—CH2—R9)2, wherein m and n are independently selected from 0, 1, and 2, and each of R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), the chemotherapeutic moiety comprises —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).
In certain embodiments of a compound of Formula (1), R6 is selected from carboxylic acid (—COOH), hydroxamic acids (—CONR12OH), boronic acids (—B(OH)(OR12), phosphinic acids or derivatives thereof (—PO(OH)R12), and phosphonic acid or derivatives thereof (—PO(OH)(OR12)), sulfinic acid (—SOOH), sulfonic acid (—SO2OH), sulfonamide (—SO2NHR12 or —NHSO2R12), sulfonimide or acyl sulfonimide (—SO2NHCOR12 or —CONHSO2R12), sulfonylureas (—SO2NHCONHR12 or —NHCONHSO2R12), amide (—CONHR12 or —NHCOR12), acylcyanamide (—CONHCN), 2,2,2-trifluoroethan-1-ols (—CH(CF3)OH), 2,2,2-trifluoromethyl ketones and hydrates thereof (—COCF3 and —C(OH)2CF3), acidic heterocycles and annular tautomers of any of the foregoing, and acidic oxocarbocycles or cyclic polyones and resonance forms of any of the foregoing; wherein R12 is selected from hydrogen, C1-6 alkyl, C1-4 fluoroalkyl, C3-6 cycloalkyl, and C6-10 aryl.
In certain embodiments of a compound of Formula (1), the acidic heterocycle and annular tautomers thereof is selected from 1H-tetrazole, 5-oxo-1,2,4-oxadiazole, 5-oxo-1,2,4-thiadiazole, 5-thioxo-1,2,4-oxadiazole, thiazolidinedione, oxazolidinedione, oxadiazolidinedione, 3-hydroxyisoxazole, 3-hydroxyisothiazole, 1-hydroxy-imidazole, 1-hydroxy-pyrazole, 1-hydroxy-triazole, 1H-imidazol-2-ol, tetrazole-5-thiol, 3-hydroxyquinolin-2-one, 4-hydroxyquinolin-2-ones, tetronic acid, tetramic acid, mercaptoazoles such as sulfanyl-1H-imidazole, sulfinyl-1H-imidazole, sulfonyl-1H-imidazole, sulfanyl-1H-triazole, sulfinyl-1H-triazole, sulfonyl-1H-triazole, sulfanyl-1H-1,2,4-triazole, sulfinyl-1H-1,2,4-triazole, sulfonyl-1H-1,2,4-triazole, sulfanyl-1,4-dihydro-1,2,4-triazol-5-one, sulfinyl-1,4-dihydro-1,2,4-triazol-5-one, sulfonyl-1,4-dihydro-1,2,4-triazol-5-one, sulfanyl 1H-tetrazole, sulfanyl 2H-tetrazole, sulfinyl 1H-tetrazole, sulfinyl 2H-tetrazole, sulfonyl 1H-tetrazole, sulfonyl 2H-tetrazole, and sulfonimidamide.
In certain embodiments of a compound of Formula (1), the acidic oxocarbocycle or cyclic polyone and resonance forms thereof is selected from cyclopentane-1,3-dione, squaric acid, squareamide, mixed squaramate, and 2,6-difluorophenol.
In certain embodiments of a compound of Formula (1), R6 is selected from —COOH, —S(O)OH, —SO2OH, —P(O)(OH)R12, —P(O)(OH)(OR12), —SO2NHR12, —NHSO2R12, SO2NHCOR12, —CONHSO2R12, —SO2NHCONHR12, —CONHCN, 1H-tetrazol-yl, 5-oxo-1,2,4-oxadiazole, 5-oxo-1,2,4-thiadiazole, 5-thioxo-1,2,4-oxadiazole, thiazolidinedione, oxazolidinedione, oxadiazolidinedione, 3-hydroxyisoxazole, 3-hydroxyisothiazole, cyclopentane-1,3-dione, squaric acid, squareamide, and mixed squaramate; wherein R12 is selected from hydrogen, C1-4 alkyl, and C3-5 cycloalkyl.
In certain embodiments of a compound of Formula (1), R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, —CONHSO2CH3, —CONHSO2CF3, —SO2NHCOCH3, —SO2NHCOCF3, —NHSO2CH3, —NHSO2CF3, 1H-tetrazol-yl, 5-oxo-1,2,4-oxadiazole-yl, 5-oxo-1,2,4-thiadiazole-yl, 5-thioxo-1,2,4-oxadiazole-yl, thiazolidinedione-yl, oxazolidinedione-yl, oxadiazolidinedione-yl, 3-hydroxyisoxazole-yl, 3-hydroxyisothiazole-yl, tetronic acid-yl, tetramic acid-yl, and cyclopentane-1,3-dione-yl.
In certain embodiments of a compound of Formula (1), R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, —CONHSO2CH3, —CONHSO2CF3, —SO2NHCOCH3, —SO2NHCOCH3, —SO2NHCOCF3, —NHSO2CF3, —NHSO2CF3, and 1H-tetrazol-5-yl.
In certain embodiments of a compound of Formula (1), R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, and 1H-tetrazol-yl.
In certain embodiments of a compound of Formula (1), R6 is —COOH.
In certain embodiments of a compound of Formula (1), each R7 is independently selected from hydrogen, deuterio, halogen, hydroxyl, and C1-4 alkyl, or two germinal R7 together with the carbon atom to which they are bonded form a C3-5 cycloalkyl ring.
In certain embodiments of a compound of Formula (1), each R7 is independently selected from hydrogen, deuterio, fluoro, hydroxyl, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, and tert-butyl, or two germinal R7 together with the carbon atom to which they are bonded form a cyclopropyl ring or a cyclobutyl ring.
In certain embodiments of a compound of Formula (1), each R7 is independently selected from hydrogen, deuterio, fluoro, hydroxyl, and methyl.
In certain embodiments of a compound of Formula (1), each R7 is independently selected from hydrogen and deuterio.
In certain embodiments of a compound of Formula (1), each R7 is hydrogen.
In certain embodiments of a compound of Formula (1), R8 is selected from hydrogen, deuterio, halogen, hydroxyl, C1-4 alkyl, C1-4 alkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, and cyclopropyl.
In certain embodiments of a compound of Formula (1), R8 is selected from hydrogen, deuterio, halogen, hydroxyl, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert-butyl, trifluoromethyl, methoxy, ethoxy, isopropoxy, trifluoromethoxy, and cyclopropyl.
In certain embodiments of a compound of Formula (1), R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, tert-butyl, hydroxyl, methoxy, ethoxy, isopropoxy, trifluoromethyl, and trifluoromethoxy.
In certain embodiments of a compound of Formula (1), R8 is methyl.
In certain embodiments of a compound of Formula (1), R8 is hydrogen.
In certain embodiments of a compound of Formula (1), each R10 is independently selected from hydrogen and C1-4 alkyl, or two R10 together with the nitrogen atom to which they are bonded form a 3- to 5-membered heterocycle.
In certain embodiments of a compound of Formula (1), L is (—X—)a wherein a is selected from 0, 1, 2, 3, and 4 and X is selected from oxygen (—O—), sulfur (—S—), sulfinyl (—SO—), sulfonyl (—SO2—), carbonyl (—CO—), —C(R16)2— wherein R16 is independently selected from hydrogen, deuterio, halogen, hydroxyl, C1-4 alkyl, and amino (—NR17—), wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1), a is 1, X and L are the same, and each of X and L is selected from a bond (“—”), methylene (—CH2—), fluoromethylene (—CFH—), difluoromethylene (—CF2—), hydroxymethylene (—C(OH)H—), ethane-1,1-diyl (—CHCH3—), propane-2,2-diyl (—C(CH3)2—), propane-1,1-diyl (—CH(CH2—CH3)—), oxygen (—O—), sulfur (—S—), sulfinyl (—SO—), sulfonyl (—SO2—), carbonyl (—CO—), and amino (—NR17—), wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1), a is 2, each X is methylene (—CH2—), and L is ethane-1,2-diyl (—CH2—CH2—); one X is methylene (—CH2—) and one X is ethane-1,1-diyl (—CHCH3—) and L is propane-1,2-diyl (—CH2—CHCH3—); one X is ethane-1,1-diyl (—CHCH3—) and one X is methylene (—CH2—) and L is propane-1,2-diyl (—CHCH3—CH2—); one X is methylene (—CH2—) and one X is hydroxymethylene (—CHOH—) and L is hydroxyethane-1,2-diyl (—CH2—CHOH—); one X is hydroxymethylene (—CHOH—) and one X is methylene (—CH2—) and L is hydroxyethane-1,2-diyl (—CHOH—CH2—); one X is methylene (—CH2—) and one X is fluoromethylene (—CFH—), and L is fluoroethane-1,2-diyl (—CH2—CHF—); one X is fluoromethylene (—CFH—), and one X is methylene (—CH2—) and L is fluoroethane-1,2-diyl (—CHF—CH2—); one X is methylene (—CH2—) and one X is difluoromethylene (—CF2—), and L is difluoroethane-1,2-diyl (—CH2—CF2—); one X is difluoromethylene (—CF2—), and one X is methylene (—CH2—) and L is difluoroethane-1,2-diyl (—CF2—CH2—); one X is carbonyl (—CO—) and one X is amino (—NR17—) and L is carbonyl amino (—CO—NR17—); one X is amino (—NR17—) and one X is carbonyl (—CO—) and L is amino carbonyl (—NR17—CO—); one X is methylene (—CH2—) and one X is amino (—NR17—) and L is methyleneamino (—CH2—NR17—); one X is amino (—NR17—) and one X is methylene (—CH2—) and L is aminomethylene (—NR17—CH2—); one X is methylene (—CH2—) and one X is oxygen (—O—) and L is methyleneoxy (—CH2—O—); one X is oxygen (—O—) and one X is methylene (—CH2—) and L is oxymethylen (—O—CH2—); one X is methylene (—CH2—) and one X is sulfur (—S—) and L is methylenethiyl (—CH2—S—); one X is sulfur (—S—) and one X is methylene (—CH2—) and L is thiylmethylene (—S—CH2—); one X is methylene (—CH2—) and one X is sulfinyl (—SO—) and L is methylenesulfinyl (—CH2—SO—); one X is sulfinyl (—SO—) and one X is methylene (—CH2—) and L is sulfinylmethylene (—SO—CH2—); one X is methylene (—CH2—) and one X is sulfonyl (—SO2—) and L is methylenesulfonyl (—CH2—SO2—); one X is sulfonyl (—SO2—) and one X is methylene (—CH2—) and L is sulfonylmethylene (—SO2—CH2—); one X is methylene (—CH2—) and one X is carbonyl (—CO—) and L is methylenescarbonyl (—CH2—CO—); and in certain embodiments, one X is carbonyl (—CO—) and one X is methylene (—CH2—) and L is carbonylmethylene (—CO—CH2—), wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1), a is 1, X and L are the same, and each of X and L is selected from a bond (“—”), methylene (—CH2—), hydroxymethylene (—C(OH)H—), ethane-1,1-diyl (—CHCH3—), propane-2,2-diyl (—C(CH3)2—), oxygen (—O—), sulfonyl (—SO2—), and amino (—NR17—), wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1), a is 2; and L is selected from ethane-1,2-diyl (—CH2—CH2—), propane-1,2-diyl (—CH2—CHCH3— or —CHCH3—CH2—), hydroxyethane-1,2-diyl (—CH2—CHOH—) or (—CHOH—CH2—), carbonyl amino (—CO—NR17—), amino carbonyl (—NR17—CO—), methyleneamino (—CH2—NR17—), aminomethylene (—NR17—CH2—), methyleneoxy (—CH2—O—), oxymethylene (—O—CH2—), methylenethiyl (—CH2—S—), thiylmethylene (—S—CH2—), methylenesulfonyl (—CH2—SO2—), and sulfonylmethylene (—SO2—CH2—), wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1),
at least one of R1 and R5 is independently selected from, halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR10), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, substituted C1-4 alkyl, C1-4 alkoxy, substituted C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl;
each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring; and
one of R1, R2, R3, R4, and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
In certain embodiments of a compound of Formula (1),
at least one of R1 and R5 is independently selected from halogen, —N(R10)2, —NR10(OR1), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy;
each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring; and
one of R1, R2, R3, R4, and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
In certain embodiments of a compound of Formula (1),
each of R1 and R5 is independently selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR10), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl;
each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring; and
one of R2, R3, and R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
In certain embodiments of a compound of Formula (1),
each of R1 and R5 is independently selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy;
each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring; and
one of R2, R3, and R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
In certain embodiments of a compound of Formula (1),
one of R1 and R5 is selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl;
each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring; and
one of R1, R2, R3, R4, and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
In certain embodiments of a compound of Formula (1),
one of R1 and R5 is selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy;
each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring; and
one of R1, R2, R3, R4, and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
In certain embodiments of a compound of Formula (1),
each of the other of R1, R2, R3, R4, and R5 is independently is selected from hydrogen, deuterio, halogen, —N(R10)2, —N(R10)(OR10), —NO2, —NO, —OH, —COOR10, —CON(R10)2, —OH, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C1-4 alkyl, C1-4 alkoxy, C1-4 heteroalkyl, C1-4 heteroalkoxy, and C4-8 cycloalkylalkyl; and
each R10 is independently selected from hydrogen and C1-4 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring.
In certain embodiments of a compound of Formula (1),
each of the other of R1, R2, R3, R4, and R5 is independently selected from hydrogen, deuterio, halogen, —NR102, —N(R10)(OR10), —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 fluoroalkyl, and C1-4 fluoroalkoxy, and
each R10 is independently selected from hydrogen and C1-4 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring.
In certain embodiments of a compound of Formula (1), each of R1 and R5 is hydrogen.
In certain embodiments of a compound of Formula (1), each of the other of R1, R2, R3, R4, and R5 is hydrogen.
In certain embodiments of a compound of Formula (1), each of R2, R3, and R5 is hydrogen.
In certain embodiments of a compound of Formula (1), R1 is selected from halogen, —N(R10)2, —N+(—O—)(R10)2, —N(OR10)(R10), —NO2, —NO, —N(R10)(S(═O)R10), —N(R10)(S(═O)2R10), —N(R10)(C(O)R10), —N(R10)(C(O)OR10), —N(R10)(C(O)N(R10)2, —CN, —COOR10, —CON(R10)2, —OH, —SH, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, —S(O)N(R10)2, —S(O)2N(R10)2, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C1-6 alkyl, substituted C1-6 alkyl, C1-6 alkoxy, substituted C1-6 alkoxy, C3-6 cycloalkyl, substituted C3-6 cycloalkyl, C3-6 cycloalkyloxy, substituted C3-6 cycloalkyloxy, C4-12 cycloalkylalkyl, substituted C4-12 cycloalkylalkyl, C6-10 aryl, substituted C6-10 aryl, C7-16 arylalkyl, substituted C7-16 arylalkyl, C1-6 heteroalkyl, substituted C1-6 heteroalkyl, C1-6 heteroalkoxy, substituted C1-6 heteroalkoxy, C3-6 heterocycloalkyl, substituted C3-6 heterocycloalkyl, C4-12 heterocycloalkylalkyl, substituted C4-12 heterocycloalkylalkyl, C5-10 heteroaryl, substituted C5-10 heteroaryl, C6-16 heteroarylalkyl, and substituted C6-16 heteroarylalkyl; wherein each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring; and
R5 is hydrogen.
In certain embodiments of a compound of Formula (1),
R1 selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR10), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl; wherein each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring; and
R5 is hydrogen.
In certain embodiments of a compound of Formula (1),
R1 is selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy; wherein each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring; and
R5 is hydrogen.
In certain embodiments of a compound of Formula (1),
each of R1 and R5 is independently selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR10), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl; wherein each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring;
one of R2, R3, and R4 is —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O—)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3;
each of the other of R2, R3, and R4 is hydrogen;
R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, and 1H-tetrazole;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, butyl, isobutyl, cyclobutyl, tert-butyl, hydroxyl, C1-4 alkoxy, C1-4 fluoroalkyl, and C1-4 fluoroalkoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —C(CH3)2—, —CF2—, —O—, —SO2—, —NR17—, —CH2—CH2—, —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CH2—CF2—, —CF2—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1),
each of R1 and R5 is independently selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy; wherein each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring;
one of R2, R3, and R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
each of the other R2, R3, and R4 is hydrogen;
R6 is —COOH;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, tert-butyl, hydroxyl, methoxy, ethoxy, isopropoxy, trifluoromethyl, and trifluoromethoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —O—, —NR17—, —CH2—CH2—), —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1),
R1 is selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl; wherein each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring;
one of R2, R3, R4, and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3;
each of the other of R2, R3, R4, and R5 is hydrogen;
R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, and 1H-tetrazole;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, butyl, isobutyl, cyclobutyl, tert-butyl, hydroxyl, C1-4 alkoxy, C1-4 fluoroalkyl, and C1-4 fluoroalkoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —C(CH3)2—, —CF2—, —O—, —SO2—, —NR17—, —CH2—CH2—, —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CH2—CF2—, —CF2—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1),
R1 is selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy; wherein each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring;
one of R2, R3, R4, and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
each of the other of R2, R3, R4, and R5 is hydrogen;
R6 is —COOH;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, tert-butyl, hydroxyl, methoxy, ethoxy, isopropoxy, trifluoromethyl, and trifluoromethoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —O—, —NR17—, —CH2—CH2—), —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1),
R5 is selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR10), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl; wherein each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring;
one of R1, R2, R3, and R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3;
each of the other of R1, R2, R3, and R4 is hydrogen;
R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, and 1H-tetrazole;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, butyl, isobutyl, cyclobutyl, tert-butyl, hydroxyl, C1-4 alkoxy, C1-4 fluoroalkyl, and C1-4 fluoroalkoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —C(CH3)2—, —CF2—, —O—, —SO2—, —NR17—, —CH2—CH2—, —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CH2—CF2—, —CF2—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1),
R5 is selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy; wherein each R10 is independently selected from hydrogen and C1-3 alkyl, or two R10 together with the nitrogen to which they are bonded form a 3- to 5-membered heterocyclic ring;
one of R1, R2, R3, and R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
each of the other of R1, R2, R3, and R4 is hydrogen;
R6 is —COOH;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, tert-butyl, hydroxyl, methoxy, ethoxy, isopropoxy, trifluoromethyl, and trifluoromethoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —O—, —NR17—, —CH2—CH2—), —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1),
one of R1 and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3;
each of the other of R1, R2, R3, R4, and R5 is hydrogen;
R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, and 1H-tetrazole;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, butyl, isobutyl, cyclobutyl, tert-butyl, hydroxyl, C1-4 alkoxy, C1-4 fluoroalkyl, and C1-4 fluoroalkoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —C(CH3)2—, —CF2—, —O—, —SO2—, —NR17—, —CH2—CH2—, —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CH2—CF2—, —CF2—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1),
one of R1 and R5 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O—)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3;
each of the other of R1, R2, R3, R4, and R5 is hydrogen;
R6 is —COOH;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, tert-butyl, hydroxyl, methoxy, ethoxy, isopropoxy, trifluoromethyl, and trifluoromethoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —O—, —NR17—, —CH2—CH2—), —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1),
R1 is selected from halogen, —N(R10)2, —N+(—O−)(R10)2, —N(R10)(OR), —NO2, —NO, —CN, —COOR10, —CON(R10)2, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-4 heteroalkyl, C1-4 heteroalkoxy, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, C3-5 cycloalkyloxy, and C4-8 cycloalkylalkyl; wherein each R10 is independently selected from hydrogen, deuterio, C1-4 alkyl, and C1-4 alkoxy, or two geminal R10 together with the nitrogen to which they are bonded form a 3- to 6-membered heterocyclic ring;
R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O—)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
each of R2, R3, and R5 is hydrogen;
R6 is selected from —COOH, —S(O)OH, —P(O)(OH)H, and 1H-tetrazole;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, butyl, isobutyl, cyclobutyl, tert-butyl, hydroxyl, C1-4 alkoxy, C1-4 fluoroalkyl, and C1-4 fluoroalkoxy; and
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —C(CH3)2—, —CF2—, —O—, —SO2—, —NR17—, —CH2—CH2—, —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CH2—CF2—, —CF2—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen, methyl, and ethyl.
In certain embodiments of a compound of Formula (1),
R1 is selected from halogen, —N(R10)2, —NR10(OR10), —NO2, —NO, —OH, C1-4 alkyl, C1-4 alkoxy, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 fluoroalkyl, C1-4 fluoroalkoxy, C3-5 cycloalkyl, and C3-5 cycloalkyloxy; wherein each R10 is independently selected from hydrogen and C1-3 alkyl; or two R10 together with the nitrogen to which they are bonded to form a 3- to 5-membered heterocyclic ring;
R4 is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O—)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, and —CH2—O—CO—N(—CH2—CH2—R9)2, wherein each R9 is independently selected from —Cl, —Br, —I, —OSO2CH3, and —OSO2CF3.
each of R2, R3, and R5 is hydrogen;
R6 is —COOH;
each R7 is independently selected from hydrogen, methyl, hydroxyl, and fluoro;
R8 is selected from hydrogen, methyl, ethyl, propyl, isopropyl, cyclopropyl, tert-butyl, hydroxyl, methoxy, ethoxy, isopropoxy, trifluoromethyl, and trifluoromethoxy;
L is selected from a bond “—”, —CH2—, —C(OH)H—, —CHCH3—, —O—, —NR17—, —CH2—CH2—), —CH2—CHCH3—, —CHCH3—CH2—, —CH2—CHOH—, —CHOH—CH2—, —CO—NR17—, —NR17—CO—, —CH2—NR17—, —NR17—CH2—, —CH2—O—, —O—CH2—, —CH2—S—, —S—CH2—, —CH2—SO2—, and —SO2—CH2—, wherein R17 is selected from hydrogen and methyl.
In certain embodiments of a compound of Formula (1), the absolute stereochemistry of the beta-carbon atom is (R).
In certain embodiments of a compound of Formula (1), the absolute stereochemistry of the beta-carbon atom is (S).
In certain embodiments of a compound of Formula (1), the absolute stereochemistry of the β carbon atom is of the (R) configuration, the absolute axial stereochemistry (atropisomerism) is Ra, and the absolute stereochemistry of a compound of Formula (1) is (R,Ra).
In certain embodiments of a compound of Formula (1), the absolute stereochemistry of the 3 carbon atom is of the (R) configuration, the absolute axial stereochemistry (atropisomerism) is Sa, and the absolute stereochemistry of a compound of Formula (1) is (R,Sa).
In certain embodiments of a compound of Formula (1), the absolute stereochemistry of the β carbon atom is of the (S) configuration, the absolute axial stereochemistry (atropisomerism) is Ra, and the absolute stereochemistry of a compound of Formula (1) is (S,Ra).
In certain embodiments of a compound of Formula (1), the absolute stereochemistry of the β carbon atom is of the (S) configuration, the absolute axial stereochemistry (atropisomerism) is Sa, and the absolute stereochemistry of a compound of Formula (1) is (S,Sa).
In certain embodiments, a compound of Formula (1) is selected from:

    4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]butanoic acid (1);
    4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (2);
    4-Amino-3-[3-[bis(2-chloroethyl)amino]-2,6-dimethyl-phenyl]butanoic acid (3);
    4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]-3-methyl-butanoic acid (4);
    4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5);
    4-Amino-3-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (6);
    4-Amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7);
    4-Amino-3-[5-[bis(2-chloroethyl)carbamoyl]-2-methyl-phenyl]butanoic acid (8);
    4-Amino-3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (9);
    4-Amino-3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]butanoic acid (10);
    4-Amino-3-[5-(bis(2-iodoethyl)amino)-2-methyl-phenyl]butanoic acid (11);
    4-Amino-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (12);
    4-Amino-3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]butanoic acid (13);
    4-Amino-3-[5-(2-bromoethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (14);
    4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (15);
    4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-2-fluoro-butanoic acid (16);
    3-(Aminomethyl)-4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-hydroxy-butanoic acid (17);
    4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-nitro-phenyl]butanoic acid (18);
    [3-Amino-2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]propyl]phosphinic acid (19);
    3-[1-(Aminomethyl)-2-(1H-tetrazol-5-yl)ethyl]-N,N-bis(2-chloroethyl)-4-methyl-aniline (20);
    4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]butanoic acid (21);
    4-Amino-3-[5-[bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]butanoic acid (22);
    4-Amino-3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]butanoic acid (23);
    4-Amino-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoic acid (24); and
    4-[1-(Aminomethyl)-3-hydroxy-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25);


or a pharmaceutically acceptable salt of any of the foregoing.
In certain embodiments of any of the foregoing compounds, a pharmaceutically acceptable salt is the hydrochloride salt.
In certain embodiments of any of the foregoing compounds, a pharmaceutically acceptable salt is the dihydrochloride salt.
In certain embodiments of a compound of Formula (1), a pharmaceutically acceptable salt is the hydrochloride salt.
In certain embodiments of a compound of Formula (1), a pharmaceutically acceptable salt is the dihydrochloride salt.
In certain embodiments, compounds of Formula (1) are selective substrates for the LAT1/4F2hc transporter.
In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 10% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 20% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 30% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 40% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 50% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 60% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 70% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 80% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 90% the Vmax of gabapentin. In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent Vmax of at least 100% the Vmax of gabapentin.
In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L) and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 50% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L). In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 40% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L). In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 30% that of L-leucine measured at an extracellular concentration of 1 mM (mmol/L). In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 20% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L). In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 10% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L).
In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 5% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L). In certain embodiments, compounds provided by the present disclosure exhibit a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 1% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L).
Compounds of Formula (1) may be adapted as prodrugs to achieve desirable pharmacokinetic properties. For example, suitable prodrugs of β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs are disclosed by Gallop, et al., U.S. Pat. Nos. 7,109,239, 6,972,341, 6,818,787 and 7,227,028. Prodrugs of compounds of Formula (1) include the prodrug systems disclosed by Gallop, et al., as well as others known in the art.
Synthesis of Compounds
Compounds disclosed herein may be obtained via the general synthetic methods illustrated in Schemes 1-10. General synthetic methods useful in the synthesis of compounds, precursors, and starting materials described herein are available in the art. Starting materials useful for preparing compounds and intermediates thereof, and/or for practicing methods described herein, are commercially available or may be prepared by well-known synthetic methods (March's Advanced Organic Chemistry: Reactions, Mechanisms, M. B. Smith, 7th Edition, John Wiley & Sons, Hoboken, N.J., USA, 2013; Advanced Organic Chemistry: Part B: Reaction and Synthesis, Carey and Sundberg, 5th Edition, Springer, Germany, 2010; Comprehensive Organic Transformations, 2nd Edition, Larock, Wiley-VCH, Weinheim, Germany, 1999; Science of Synthesis: Houben-Weyl Methods of Moleculer Transformations, Thieme, Germany (www.thieme.de).
Additionally, as will be apparent to those skilled in the art, use of conventional protecting groups or protecting strategies may be necessary to prevent certain functional groups from undergoing undesired reactions. Suitable protecting groups for various functional groups as well as suitable conditions for protecting and deprotecting particular functional groups are well known in the art (Wuts and Greene, Greene's Protective Groups in Organic Synthesis, 4th Ed, 2007, Wiley-Interscience, John Wiley & Sons, Inc., Hoboken, N.J.).
It will be appreciated that where typical or preferred process conditions, e.g., reaction temperatures, reaction times, molar ratios of reactants, solvents, pressures, etc., are given other process conditions may also be used. Optimal reaction conditions may vary with the particular reactants, solvents, functional groups, and protecting groups used, but such conditions may be determined by one skilled in the art by routine optimization procedures.
Furthermore, certain compounds provided by the present disclosure may contain one or more stereogenic centers. Accordingly, and if desired, such compounds may be prepared or isolated as pure stereoisomers, e.g., as individual enantiomers, diastereomers, atropisomers, rotamers, or as stereoisomer enriched mixtures or racemates. All such stereoisomers are included within the scope of this disclosure. Pure stereoisomers (or enriched mixtures thereof) may be prepared using, for example, optically active starting materials, stereoselective reagents such as chiral catalysts and auxiliaries well known in the art. Alternatively, racemic mixtures of such compounds may be separated or partially enriched using, for example, chromatographic methods with chiral stationary phases, chiral resolving agents, and the like, also well known in the art and easily adaptable to the particular compound to be separated.
Methods of preparing (protected) 3-, 4-, and/or 5-ring-substituted and ring-unsubstituted pyrrolidin-2-ones (γ-lactams) from commercial or known starting materials are well known in the art (Huang, in New Methods for the Asymmetric Synthesis of Nitrogen Heterocycles; Research Signpost: Trivandrum, India, 2005, pp 197-222; Smith, in Science of Synthesis (S. Weinreb, et. al (Ed.s)), Georg Thieme Verlag: Stuttgart, Germany, 2005, Vol. 21, pp 647-711). In particular, methods of preparing (protected) 4-aryl-, 4-alkylaryl-, 4-heteroalkylaryl, 4-aryloxy substituted pyrrolidin-2-ones from commercial or known starting materials are well known in the art. In certain embodiments, 3-, 4-, and/or 5-ring substituted and unsubstituted pyrrolidin-2-ones may be used as starting materials for the preparation of N-mustard β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs or (bio)isosteres provided by the present disclosure.
Methods of synthetic manipulations and modifications of the underlying pyrrolidin-2-one ring (γ-lactam ring) of 3-, 4-, and/or 5-ring-substituted and -unsubstituted pyrrolidin-2-ones are also well known in the art (Huang, in New Methods for the Asymmetric Synthesis of Nitrogen Heterocycles; Research Signpost: Trivandrum, India, 2005, pp 197-222; Smith, in Science of Synthesis (S. Weinreb, et. al (Ed.s)), Georg Thieme Verlag: Stuttgart, Germany, 2005, Vol. 21, pp 647-711). In certain embodiments, the underlying pyrrolidin-2-one ring (γ-lactam) may be modified to allow for regio- and/or stereoselective incorporation of auxiliary molecular functionalities into the resulting β-substituted γ-amino acid scaffold of the final N-mustard functionalized β-substituted γ-amino acid derivatives or β-substituted γ-amino acid analogs or (bio)isosteres. Auxiliary molecular functionalities may, for example, be incorporated to modulate interaction with LAT1 transporter proteins, e.g., efficacy of translocation through biological membranes, modulate physiochemical or ADMET properties, or to modulate the activity of the physiologically active N-mustard moiety, e.g., cytotoxicity.
Methods of synthetic manipulations and modifications of the aryl ring of (protected) 4-aryl-, 4-alkylaryl-, 4-heteroalkylaryl, 4-aryloxy substituted pyrrolidin-2-ones are also well known in the art (Xu, et al., U.S. Pat. No. 8,344,028 (2013)). In certain embodiments, the underlying aryl ring may be modified to allow for regioselective incorporation of functional groups that can be converted to N-mustards by using reagents, methods, and protocols well known in the art. In certain embodiments, the underlying aryl ring may also be modified to allow for regio- and/or stereoselective incorporation of auxiliary molecular functionalities into the arene scaffold. Auxiliary molecular functionalities may, for example, be incorporated to modulate interaction with LAT1 transporter proteins, e.g., efficacy of translocation through biological membranes (binding to the LAT1-transporter protein and capacity of LAT1-mediated transport), modulate physiochemical or ADMET properties, or to modulate the activity of the physiologically active N-mustard moiety, e.g., cytotoxicity.
Methods of functionalizing the amino acid scaffold of 3-aryl-, 3-alkylaryl-, 3-heteroalkylaryl, 3-aryloxy substituted 2-, 3-, and/or 4-substituted and unsubstituted γ-amino acid amino acid derivatives (β-substituted γ-amino acid butyric acid derivatives, β-substituted GABA derivatives), similarly substituted 3-aminopropylphosphinic acid, 3-aminopropylsulfinic acids, or 3-aminopropyl substituted carboxylic acid (bio)isosteres from commercial or known starting materials are also well known in the art.
In certain embodiments, starting materials may be used in their fully protected form wherein the amino group or a synthetic equivalent or a precursor thereof and the carboxylic acid, phosphinic acid, sulfinic acid, carboxylic acid (bio)isosteres or synthetic equivalents or precursors of any of the foregoing are appropriately protected.
In certain embodiments, starting materials may be used in their hemi-protected form wherein the amino group or a synthetic equivalent or a precursor thereof is protected and the carboxylic acid group, phosphinic acid, sulfinic acid, or a carboxylic acid (bio)isostere functional group or synthetic equivalents or precursors of any of the foregoing are unprotected or free.
In certain embodiments, starting materials may be used in their hemi-protected form wherein the amino group is unprotected or free and the carboxylic acid, phosphinic acid, sulfinic acid, or a carboxylic acid (bio)isostere or synthetic equivalents or precursors of any of the foregoing are appropriately protected.
In certain embodiments, starting materials may be used in their fully unprotected form wherein the amino group and the carboxylic acid, phosphinic acid, sulfinic acid, or the carboxylic acid (bio)isostere or synthetic equivalents or precursors of any of the foregoing are unprotected.
Methods for converting 4-aryl-, 4-alkylaryl-, 4-heteroalkylaryl, 4-aryloxy substituted pyrrolidin-2-ones pyrrolidin-2-ones to their corresponding ring-opened derivatives such as 3-aryl-, 3-alkylaryl-, 3-heteroalkylaryl, 3-aryloxy substituted 4-aminobutyric acid derivatives are known in the art (Ordñéz and Cativiela, Tetrahedron: Asymmetry, 2007, 18, 3-99; M. Ordñéz, et al., Tetrahedron: Asymmetry, 2010, 21, 129-147; and Xu, et al., U.S. Pat. No. 8,344,028). Such ring-opened derivatives may be prepared either (a) in their fully unprotected form (e.g., with a free amino group and a free carboxylic acid group, zwitterions thereof, any salts thereof, or any pharmaceutically acceptable salts thereof), (b)(i) in their amino-protected form with a free carboxylic acid group, any salts thereof, or any pharmaceutically acceptable salts thereof), (b)(ii) in their carboxyl-protected form and a free amino group, any salts thereof including pharmaceutically acceptable salts, or synthetic equivalents or precursors thereof), or (c) in their fully amino- and carboxylic acid-protected form or synthetic equivalents or precursors thereof. Alternatively, methods of converting any of the ring-opened fully protected, hemi-protected, or unprotected 3-aryl-, 3-alkylaryl-, 3-heteroalkylaryl, 3-aryloxy substituted 4-aminobutyric acid derivatives, to the corresponding 4-aryl-, 4-alkylaryl-, 4-heteroalkylaryl, 4-aryloxy substituted pyrrolidin-2-ones are also well known in the art.
Many other methods for the preparation of appropriately functionalized or substituted 3-aryl-, 3-alkylaryl-, 3-heteroalkylaryl, 3-aryloxy substituted (β-aryl-, β-alkylaryl-, β-heteroalkylaryl, β-aryloxy substituted) 4-aminobutyric acid analogs, carboxylic acid (bio)isosteres, derivatives, or precursors thereof using commercial or known starting materials described herein are either described in the art or will be readily apparent to one skilled in the art in view of the references provided herein. Accordingly, the methods presented in the schemes provided by the present disclosure are illustrative rather than comprehensive.
Referring to Scheme 1, selected and representative starting materials for the preparation N-mustard functionalized 4-aryl-, 4-alkylaryl-, 4-heteroalkylaryl, 4-aryloxy substituted pyrrolidin-2-ones, or 3-aryl-, 3-alkylaryl-, 3-heteroalkylaryl, 3-aryloxy substituted (β-aryl-, β-alkylaryl-, β-heteroalkylaryl, β-aryloxy substituted) γ-amino acid analogs or carboxylic acid (bio)isosteres are compounds of Formula (A) and Formula (B).
Referring to Scheme 1, in certain embodiments R1 and/or R5, and the linker L are as defined herein; one of R2, R3, and R4 in compounds of Formula (A) and Formula (B) is -E-MH, wherein E is a bond (“—”), an oxygen atom (—O—), a methylene group (—CH2—), a methyleneoxy group (—CH2—O—), a carbonyl group (—CO—), or a methylenecarbonyl group (—CH2—CO—), and wherein -MH is an amino group (—NH2), a hydroxyl group (—OH), or a sulfhydryl group (—SH). Each of the other remaining R2, R3, and R4 is hydrogen; each R7; and each R8 is hydrogen.
Referring to Scheme 1, for example (a) -E-MH is equivalent to a primary aromatic amino group (—NH2, aniline) when E is a bond (“—”) and MH is an amino group (—NH2), (b) -E-MH is equivalent to a primary O-aryl hydroxylamino group (—O—NH2) when E is an oxygen atom (—O—) and MH is an amino group (—NH2), (c) -E-MH is equivalent to a primary aminomethyl group (—CH2—NH2, primary benzylic amine) when E is a methylene group (—CH2—) and MH is an amino group (—NH2), (d) -E-MH is equivalent to an aromatic hydroxyl group (—OH, phenol) when E is a bond (“—”) and MH is a hydroxyl group (—OH), (e) -E-MH is equivalent to a hydroxymethyl group (—CH2—OH, benzylic alcohol) when E is a methylene group (—CH2—) and MH is a hydroxyl group (—OH), (f) -E-MH is equivalent to a primary O-benzylic hydroxylamino group (—CH2—O—NH2) when E is a methyleneoxy group (—CH2—O—) and MH is an amino group (—NH2), (g) -E-MH is equivalent to an aromatic sulhydryl group (—SH, thiophenol derivative) when E is a bond (“—”) and MH is a hydroxyl group (—OH), (h) -E-MH is equivalent to a methylenesulhydryl group (—CH2—SH, benzylic thiol) when E is a methylene group (—CH2—) and MH is a sulfhydryl group (—SH), (i) -E-MH is equivalent to an aromatic carboxylic acid group (—CO—OH, benzoic acid) when E is a carbonyl group (—C(═O)—) and MH is a hydroxyl group (—OH), (j) -E-MH is equivalent to a carboxylic acid group (—CO—OH, benzoic acid) when E is a methylenecarbonyl group (—CH2—C(═O)—) and MH is a hydroxyl group (—OH).
It will be obvious to the one skilled in the art that in some embodiments of the disclosure the group “-E-” in functional groups -E-MH presented in the following schemes is equivalent to the group -A- in the definition of the composition of a chemotherapeutic moiety as described herein.
The linker L is as defined herein.
Referring to Scheme 1, in certain embodiments R20 in compounds of Formula (B) is a protected carboxyl group such as a lower alkyl ester of a carboxyl group, e.g., a methyl, ethyl, or tert-butyl ester, or a benzyl ester derivative, e.g., benzyl, pentamethylbenzyl or (4-methoxy)benzyl. In certain embodiments, R20 in compounds of Formula (B) is a tert-butyl ester group (CO2tBu). In certain embodiments, R20 in compounds of Formula (B) is a methyl ester group (CO2Me).
Referring to Scheme 1, in certain embodiments R20 in compounds Formula (B) is a protected phosphinic acid derivative, e.g., 1,1-diethyloxyethylethoxyphosphino-1-one (—P(═O)(OEt)[C(OEt)2Me](U.S. Pat. No. 8,344,028; Baylis, Tetrahedron Letter, 1995, 36(51), 9385-9388; and Burgos-Lepley, et al., Bioorg. Med. Chem. Lett., 2006, 16, 2333-2336).
Referring to Scheme 1, in certain embodiments R20 in compounds Formula (B) is a protected sulfinic acid precursor derivative, e.g., a 2-mercaptobenzothiazole (Carruthers, et al., Bioorg. Med. Chem. Lett, 1995, 5, 237-240; Carruthers, et al., Bioorg. Med. Chem. Lett, 1998, 5, 3059-3064; Okawara, et al., Chem. Lett., 1984, 2015; and Burgos-Lepley, et al., Bioorg. Med. Chem. Lett., 2006, 16, 2333-2336).
Referring to Scheme 1, in certain embodiments R20 in compounds Formula (B) is a unprotected or protected carboxylic acid (bio)isostere including a protected or unprotected 1H-tetrazole (Ballatore, et al., ChemMedChem, 2013, 8(3), 385-395; Bryans, et al., U.S. Pat. No. 6,518,289; Burgos-Lepley, et al., Bioorg. Med. Chem. Lett., 2006, 16, 2333-2336).
Referring to Scheme 1, in certain embodiments of compounds of Formula (A) Q is NH or N-PG where PG is a suitable nitrogen protecting group, e.g., tert-butoxycarbonyl (Boc), benzyloxycarbonyl (Cbz, Z), (R/S)-1-phenyl-ethoxycarbonyl, (R)-1-phenyl-ethoxycarbonyl, (S)-1-phenyl-ethoxycarbonyl, 1-methyl-1-phenyl-ethoxycarbonyl, triphenylmethyl (trityl), or the like. In certain embodiments of compounds of Formula (A) Q is NH (non-protected lactam). In certain embodiments of compounds of Formula (A) and of Formula (C), Q is N-Boc (NCO2tBu) (N-protected lactam).
Referring to Scheme 1, in certain embodiments of compounds of Formula (B) Q is N(H)—PG where PG is a suitable nitrogen protecting group, e.g., tert-butoxycarbonyl (Boc), allyloxycarbonyl (alloc), benzyloxycarbonyl (Cbz, Z), ethoxycarbonyl, methoxycarbonyl, (R/S)-1-phenyl-ethoxycarbonyl, (R)-1-phenyl-ethoxycarbonyl, (S)-1-phenyl-ethoxycarbonyl, 1-methyl-1-phenyl-ethoxycarbonyl, formyl, acetyl, trifluoroacetyl, benzoyl, triphenylmethyl (trityl), 4-methoxyphenyl-diphenylmethyl, di-(4-methoxyphenyl)-phenylmethyl, or the like. In certain embodiments, PG in compounds of Formula (B) is tert-butoxycarbonyl (Boc) and Q is N(H)Boc (N(H)CO2tBu). In certain embodiments of compounds of Formula (B) PG is acetyl and Q is N(H)—Ac (N(H)COMe). In certain embodiments of compounds of Formula (B) and of Formula (D), PG is benzoyl and Q is N(H)—Bz (N(H)COPh).
Referring to Scheme 1, in certain embodiments Q is N(PG)2, where PG is a nitrogen protecting group such as an imide-type protecting group, e.g., phthalyl or tert-butoxycarbonyl (Boc). In certain embodiments of compounds of Formula (B) PG is phthalyl and Q is N(phthalyl). In certain embodiments of compounds of Formula (B) PG is tert-butoxycarbonyl and Q is N(Boc)2.
Referring to Scheme 1, in certain embodiments the protected amine functionality is an imine where Q is N═CR30R31 and each of R30 and R31 is independently selected from branched C1-4 alkyl, non-branched C1-4 alkyl, substituted aryl, non-substituted aryl, substituted heteroaryl, and non-substituted heteroaryl.
The structures presented in the schemes provided by the present disclosure are illustrative rather than comprehensive.




Referring to Scheme 2, in certain embodiments R1 and/or R5, R20, E, the linker L, and the protecting groups PG and Q are as defined herein; one of R2, R3, and R4 in compounds of Formula (C) and Formula (D) is -E-NH2, wherein E is a bond (“—”), an oxygen atom (—O—), a methylene group (—CH2—), or methylenoxy group (—CH2—O—), and MH is an amino group (—NH2) so that -E-NH2 is equivalent to (a) a primary aromatic amino group (—NH2, aniline), (b) a primary O-aryl hydroxylamino group (—O—NH2), (c) a primary aminomethyl group (—CH2—NH2), or (d) a primary O-benzyl hydroxylamino group (—CH2—O—NH2). Each of the other remaining R2, R3, and R4 is hydrogen; and each R7 and each R8 is hydrogen. X is a suitable leaving group e.g., chloro (—Cl) or bromo (—Br).




Referring to Scheme 2, conversion of the primary amino group as in compounds of Formula (C) and of Formula (D) to the N,N-bis-(2-hydroxyethyl) amino group (N,N-bis-(2-hydroxyethylation)) as in compounds of Formula (E) or of Formula (F) may be accomplished by reacting compounds of Formula (C) and of Formula (D) in suitable solvents such as about 25-75 vol.-% aqueous acetic acid (HOAc), glacial acetic acid, water, tetrahydrofuran (THF), ethanol (EtOH), 1,4-dioxane, or mixtures of any of the foregoing with an excess of ethylene oxide (oxirane) (about 4-20 equivalents) at a temperature of about −20° C. to about room temperature for about 12-48 hours. Alternatively, the reaction mixture may be heated in a sealed reaction vessel from about 80-140° C. for comparable times (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Abela Medici, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Feau, et al., Org. Biomolecular Chem., 2009, 7(24), 5259-5270; Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; Taylor, et al., Chem. Biol. Drug Des., 2007, 70(3), 216-226; Buss, et al., J. Fluorine Chem., 1986, 34(1), 83-114; Larden and Cheung, Tetrahedron Lett., 1996, 37(42), 7581-7582; Spreitzer and Puschmann, Monatshefte für Chemie, 2007, 138(5), 517-522; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; Weisz, et al., Bioorg. Med. Chem. Lett., 1995, 5(24), 2985-2988; Thorn, et al., J. Org. Chem, 1975, 40(11), 1556-1558; Baraldini, et al., J. Med., Chem., 2000, 53(14), 2675-2684; Zheng, et al., Bioorg., Med., Chem., 2010, 18(2), 880-886; Gourdi, et al., J., Med., Chem., 1990, 33(4), 1177-1186; Haines, et al., J. Med. Chem., 1987, 30, 542-547; Matharu, et al., Bioorg. Med. Chem. Lett., 2010, 20, 3688-3691; and Kupczyk-Subotkowska, et al., J. Drug Targeting, 1997, 4(6), 359-370).
Referring to Scheme 2, conversion of the primary amino group as in compounds of Formula (C) and of Formula (D) to the N,N-bis-(2-hydroxyethyl) amino group (N,N-bis-(2-hydroxyethylation)) as in compounds of Formula (E) or of Formula (F) may be accomplished by reacting compounds of Formula (C) and of Formula (D) in suitable solvents such water with an excess of about 2-5 equivalents of a suitable 2-halogeno ethanol derivative, e.g., 2-chloroethanol (ClCH2CH2OH) or 2-bromoethanol (BrCH2CH2OH), and about 2.0 equivalents of a suitable inorganic base such as sodium bicarbonate (NaHCO3), sodium carbonate (Na2CO3), or calcium carbonate (CaCO3) at about reflux temperature for about 8-24 hours. Optionally, the reaction may be carried out in the presence of a catalytic amount (about 10 mol-%) of potassium iodide (KI) (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Coggiola, et al., Bioorg. Med. Chem. Lett., 2005, 15(15), 3551-3554; Verny and Nicolas, J. Label. Cmpds Radiopharm., 1988, 25(9), 949-955; and Lin, Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943).
Referring to Scheme 3, in certain embodiments electron-deficient aryl halides of Formula (G) or Formula (H), activated with strongly electron withdrawing substituents for nucleophilic aromatic substitution reactions (SNAr) at the aryl ring, may be useful starting materials for incorporating N,N-bis-(2-functionalized) ethyl amino groups as in compounds of Formula (I) and Formula (J) where the corresponding N,N-bis-(2-functionalized)ethyl amino groups are N,N-bis-(2-hydroxyethyl) amino groups. Commonly used leaving groups (—X) for SNAr-reactions include halogeno, e.g., fluoro (—F), chloro (—Cl), bromo (—Br), with accessory activating groups at the 2- or 4-position relative to the leaving group (ortho- or para-positions). Such groups decrease the electron density in the arene ring and increase the susceptibility to nucleophilic attack and displacement of the leaving group (—X). Examples of activating, strongly electron-withdrawing groups (EWG), include trifluoromethyl (—CF3), cyano (—CN), nitro (—NO2), amide (—CON(R10)2), and formyl (—CHO).
Useful secondary amines for the introduction of the N,N-bis-(2-hydroxyethyl) amino functionality include diethanolamine (HN(CH2CH2OH)2), protected diethanolamine derivatives, e.g., O-benzylether protected diethanolamine (HN(CH2CH2OBn)2), or precursors of the putative N,N-bis-(2-hydroxyethyl)amino group, e.g., 3-pyrroline. Employing O-benzylether protected diethanolamine (HN(CH2CH2OBn)2) or 3-pyrroline necessitates conversion of the corresponding intermediate substitution products to compounds of Formula (I) and of Formula (J) bearing the target N,N-bis-(2-hydroxyethyl)amino groups using methods well known in the art.
Referring to Scheme 3, in certain embodiments R1 and/or R5, R10, R20, the linker L, the protecting group PG, and Q, the electron withdrawing group (EWG), the leaving group (—X), and the secondary amine HNR2 are defined as described herein; R1 and/or R5 may also represent an electron withdrawing group (EWG); one or more of R2, R3, and R4 in compounds of Formula (G) or of Formula (H) is a suitable leaving group (—X)), one or more of R2, R3, and R4 is a electron withdrawing group (EWG) preferably in 2- or 4-position relative to the leaving group X; each of the other remaining R2, R3, and R4 is hydrogen; and each of R7 and R8 is hydrogen.




Referring to Scheme 3, N,N-bis(2-hydroxyethyl)amino derivatives as in compounds of Formula (I) or of Formula (J) may be prepared through nucleophilic aromatic substitution reactions (SNAr) of aromatic halides of Formula (G) and of Formula (H), activated by electron withdrawing groups (EWGs), by reaction with an excess of about 1.5-5 equivalents of the neat amine, e.g., HN(CH2CH2OH)2, HN(CH2CH2OBn)2, or 3-pyrroline, (weakly basic reaction conditions) or solutions of the secondary amine in polar aprotic anhydrous solvents, e.g., anhydrous dimethylsulfoxide (DMSO), N,N-dimethylformamide (DMF), N,N-dimethylacetamide (DMAc), acetonitrile (MeCN), 1,4-dioxane, tetrahydrofuran (THF), or mixtures of the foregoing at a temperature from about 80-200° C. (sealed tube), for about 1-12 hours to provide N,N-bis(2-hydroxyethyl)amino-functionalized compounds of Formula (I) or of Formula (J). The reaction may also be carried out in the presence of a catalyst, e.g., copper powder (about 10 mol-%) (Atwell, et al., J. Med. Chem., 2007, 50(6), 1197-1212; Palmer, et al., J. Med. Chem., 1994, 37, 2175-2184; Palmer, et al., J. Med. Chem., 1992, 35(17), 3214-3222; Palmer, et al., J. Med. Chem, 1990, 33(1), 112-121; Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Dheyongera, et al., Bioorg. Med. Chem., 2005, 13(3), 689-698; Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943; and Ferlin, et al., Bioorg. Med. Chem., 2004, 12(4), 771-777).
Referring to Scheme 3, methods to convert the N,N-bis-(2-benzyloxyethyl)amino group to a N,N-bis-(2-hydroxyethyl)amino group include, for example, catalytic hydrogenolysis of the benzyl ether groups using heterogeneous catalysts, e.g., 5-10% Pd on carbon (Pd/C) or Raney®-Nickel under standard hydrogenation reaction conditions known in the art (Vincent and Prunet, Tetrahedron Lett, 2006, 47(24), 4075-4077).
Referring to Scheme 3, conversion the 3-pyrroline ring of the N-aryl-3-pyrroline moiety to a N,N-bis-(2-hydroxyethyl)amino group as in compounds of Formula (G) or of Formula (H) include oxidative cleavage of the C═C-double with the Lemieux-Johnson reagent (osmium tetroxide/sodium periodate, OsO4/NaO4) or by ozonolysis with an O3/O2-gas mixture. Reductive work-up, e.g., with borane-dimethylsulfide complex (BH3.Me2S), triphenylphosphine (Ph3P), thiourea (C(═S)(NH2)2), or zinc dust, may yield intermediate N,N-bis(2-oxoethyl)amino groups which may subsequently be reduced to the desired N,N-bis-(2-hydroxyethyl)amino group as in compounds of Formula (G) or of Formula (H) with suitable reducing reagents, e.g., borane-THF complex (BH3.THF), or sodium borohydride (NaBH4), under standard reaction conditions (Palmer and Denny, Synth. Commun., 1987, 17(5), 601-610).
In general, the biological activity of nitrogen mustards is based upon the presence of a N,N-bis(2-chloroethyl) functionality. The chemotherapeutic and cytotoxic effects are directly associated with the alkylation of DNA due to the strong electrophilic character of the N,N-bis(2-chloroethyl) functionality. Formation of covalent linkages including interstrand crosslinks (ICLs) is highly cytotoxic and involves the disruption of fundamental cellular processes including DNA replication leading to cellular death.
Many methods and reagents for converting primary alcohols to primary alkyl chlorides including conversion of N,N-bis(2-hydroxyethyl)amino groups to N,N-bis(2-chloroethyl)amino groups are known in the art. The most common methods include the use of concentrated hydrochloric acid (HCl) and various inorganic chlorides of sulfur or phosphorus which are used either in neat form or as solutions in inert solvents such as chlorinated hydrocarbons, aromatic hydrocarbons, or polar non-protic solvents, at room temperature or at elevated temperatures. Other useful chlorination methods and reagents include, for example, combinations of triphenyl phosphine and trichloroacetonitrile (Ph3P/Cl3CCN), triphenylphosphine dichloride (Ph3PCl2) (prepared from Ph3P and Cl2), trimethylsilylchloride and bismuth(III) trichloride (Me3SiCl/BiCl3), mixtures of Ph3P and carbon tetrachloride (CCl4), or methanesulfonyl chloride (MeSO2Cl) in pyridine at elevated temperatures.
Referring to Scheme 4, it will be appreciated by one skilled in the art that the presence of particular functional or protecting groups in compounds of Formula (K-N) determines the choice a particular reagent, method, or reaction condition for the chloro-de-hydroxylation reaction.
Referring to Scheme 4, in certain embodiments R1 and/or R5, R20, the linker L, E, the protecting groups PG and Q are defined as described herein; one of R2, R3, and R4 in compounds of Formula (K) and of Formula (L) is a -E-N,N-bis(2-hydroxyethyl)amino group (-E-N(CH2—CH2—OH)2); each of the other remaining R2, R3, and R4 is hydrogen; and each R7 and each R8 is hydrogen.




Referring to Scheme 4, in some embodiments N,N-bis(2-hydroxyethyl) compounds of Formula (K) or of Formula (L) may be reacted with an excess of about 2-15 equivalents of thionyl chloride (SOCl2) either in neat form or as a solution in an anhydrous organic solvent, e.g., dichloromethane (DCM), chloroform (CHCl3), 1,2-dichloroethane (DCE), benzene, or mixtures of any of the foregoing at temperatures from about 0° C. (ice bath)-40° C. or heated at reflux for about 0.5-3 hours to provide compounds of Formula (M) or of Formula (N) (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Abela Medici, et al., J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Taylor, et al., Chem. Biol. Drug Des., 2007, 70(3), 216-226; Dheyongera, Bioorg. Med. Chem. 2005, 13(3), 689-698; Zheng, Bioorg. Med. Chem. 2010, 18(2), 880-886; Gourdi, J. Med. Chem., 1990, 33(4), 1177-1186; and Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943). The reaction may optionally be carried out in the presence of a catalytic amount of zinc chloride (ZnCl2) (10 mol-% to 40 mol-%) or in the presence of a catalytic amount of N,N-dimethylformamide (DMF) to facilitate the reaction (Squires, et al., J. Org. Chem., 1975, 40(1), 134-136; and Abela Medici, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263).
Referring to Scheme 4, in some embodiments N,N-bis(2-hydroxyethyl) compounds of Formula (K) or of Formula (L) may also be reacted with an excess of about 2-10 equivalents of phosphorus(V)oxychloride (phosphoryl chloride, POCl3) either in neat form or as a solution in an anhydrous organic solvent, e.g., benzene, acetonitrile, pyridine, or mixtures of any of the foregoing at a temperature from about 0° C. (ice bath) to about room temperature. The reaction mixture may also be heated from about 80° C. to about reflux temperature for about 0.5-6 hours to provide compounds of Formula (M) or of Formula (N) (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Feau, et al., Org. Biomolecular Chem., 2009, 7(24), 5259-5270; Valu, et al., J. Med. Chem., 1990, 33(11), 3014-3019; Baraldini, et al., J. Med., Chem., 2000, 53(14), 2675-2684; Gourdi, et al., J., Med., Chem., 1990, 33(4), 1177-1186; Haines, et al., J. Med. Chem., 1987, 30, 542-547; and Matharu, et al., Bioorg. Med. Chem. Lett., 2010, 20, 3688-3691).
Referring to Scheme 4, in some embodiments N,N-bis(2-hydroxyethyl) compounds of Formula (K) or of Formula (L) may also be reacted with an excess of carbon tetrachloride (CCl4), optionally in an inert solvent, e.g., dichloromethane (DCM), in the presence of an excess of triphenylphosphine (Ph3P) for about 8-24 hours at about room temperature or at reflux temperature for about 2-6 hours to provide compounds of Formula (M) or of Formula (N) (Buss, et al., J. Fluorine Chem., 1986, 34(1), 83-114; and Kupczyk-Subotkowska, et al., J. Drug Targeting, 1997, 4(6), 359-370).
Referring to Scheme 4, in some embodiments N,N-bis(2-hydroxyethyl) compounds of Formula (K) or of Formula (L) may also be reacted with methanesulfonyl chloride (MeSO2Cl, MsCl) in anhydrous pyridine at about room temperature or at about 70-100° C. for about 1-3 hours to provide compounds of Formula (M) or of Formula (N) (Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Abela Medici, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; and Larden and H. T. A. Cheung, Tetrahedron Lett., 1996, 37(42), 7581-7582).
Referring to Scheme 5, although halides are common leaving groups in nucleophilic substitution reactions for synthetic purposes, it is often more convenient to use the corresponding alcohols such as the ones found in N,N-bis(2-hydroxyethyl)amino groups of compounds of Formula (O). Since OH is usually considered a poor leaving group, unless protonated, conversion of a hydroxy group such as in N,N-bis(2-hydroxyethyl)amino groups of compounds of Formula (O) into reactive ester groups, most commonly sulfonic ester groups, converts the hydroxyl group into a functional group with a higher susceptibility to be displaced by an incoming nucleophile including halogenide ions. The N,N-bis(2-aryl- or (polyfluoro)alkylsulfonyloxy)amino groups of aryl- or (polyfluoro)alkylsulfonates of Formula (P) and similar sulfonic esters are most frequently prepared from N,N-bis(2-hydroxy)amino groups of diols of Formula (O) through reaction with an appropriate aryl- or (polyfluoro)alkylsulfonyl chloride or anhydride in the presence of a suitable base, e.g., pyridine (nucleophilic catalyst). Besides aromatic (R40 is (substituted) aryl) sulfonic ester groups, aliphatic (R40 is alkyl) sulfonic ester groups, and, in particular, (poly)fluorinated (R40 is poly-F-alkyl) sulfonic ester groups as still more powerful leaving groups are frequently used for activation.
Referring to Scheme 5, in certain embodiments the R40-group in compounds of Formula (P) or Formula (R) is for example phenyl and the leaving group is phenylsulfonyloxy (PhSO2O), 4-methylphenyl (para-methylphenyl) and the leaving group is tosylate (4-methylphenylsulfonyloxy, TsO), 4-bromophenyl (para-bromophenyl) and the leaving group is brosylate (4-bromophenylsulfonyloxy, BsO), or 4-nitrophenyl (para-nitrophenyl) and the leaving group is nosylate (4-nitrophenylsulfonyloxy, NsO), methyl and the leaving group is mesylate (methanesulfonyloxy, MsO), trifluomethyl and the leaving group is triflate (trifluoromethanesulfonyloxy, TfO), nonafluoro-n-butyl and the leaving group is nonaflate (nonafluorobutanesulfonyloxy), or 2,2,2-trifluoroethyl and the leaving group is tresylate (2,2,2-trifluoroethanesulfonyloxy). In some embodiments, the R40-group of compounds of Formula (P) and Formula (R) is methyl and the leaving group is mesylate (methansulfonyloxy, MsO). In some embodiments, the R40-group of compounds of Formula (P) and of Formula (R) is trifluoromethyl and the leaving group is triflate (trifluoromethansulfonyloxy, TfO).
Referring to Scheme 5, N-mustard-type halides of Formula (Q), Formula (R), and Formula (S) containing either (a) a N,N-bis(2-halogenoethyl)amino group (compounds of Formula (Q)), (b) a N-(2-halogenoethyl)amino-, N-(2-halogenoethyl)amino- group (compounds of Formula (S) or mixed halogeno N-mustards), or (c) a N-(2-halogenoethyl)amino, N-(2-aryl- or (polyfluoro)alkylsulfonyloxyethyl)amino groups (compounds of Formula (R) or hybrid halogeno sulfonate N-mustards), may be prepared from the corresponding esters of sulfonic acid esters of Formula (P) through reaction with an excess or a near stoichiometric amount of an alkali metal halide (MX, MX′) in suitable protic or non-protic organic solvent at elevated temperature (halo-de-sulfonyloxy substitution)
Referring to Scheme 5, in certain embodiments M in MX or MX′ is an alkali metal cation, e.g., lithium (Li+) and sodium (Na+), X and X′ in MX or MX′ are halide anions, e.g., chloride (Cl−), bromide (Br−), and iodide (I−). MX or MX′ are alkali metal halides, e.g., lithium chloride (LiCl), lithium bromide (LiBr), sodium chloride (NaCl), sodium bromide (NaBr), or sodium iodide (NaI). In compounds of Formula (Q), Formula (R), and Formula (S), X is a halogeno, e.g., chloro (—Cl), bromo (—Br), and iodo (—I) (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Palmer, et al., J. Med. Chem., 1994, 37, 2175-2184; Palmer, et al., J. Med. Chem., 1996, 39(13), 2518-2528; Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; Weisz, et al., Bioorg. Med. Chem. Lett., 1995, 5(24), 2985-2988; Thorn, J. Org. Chem, 1975, 40(11), 1556-1558; Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943; Gourdi, et al., J. Med. Chem. 1990, 33(4), 1177-1186; Yang, et al., Tetrahedron, 2007, 63(25), 5470-5476; Ferlin, et al., Bioorg. Med. Chem., 2004, 12(4), 771-777; and Coggiola, et al., Bioorg. Med. Chem. Lett., 2005, 15(15), 3551-3554).
Referring to Scheme 5, N-(2-halogenoethyl)amino, N-(2-aryl- or alkylsulfonyloxyethyl)amino groups of Formula (R) (hybrid halogeno sulfonate N-mustards) may also be prepared from primary alkyl halides of Formula (Q) containing N,N-bis(2-halogenoethyl)amino groups through a) a halo-de-halogenation (halide exchange reaction) or b) a metathetical sulfonyloxy de-halogeno substitution reaction with solubilized silver sulfonates AgOSO2R40 wherein R40 is defined as described herein under mild conditions in aprotic organic solvents (Emmons and Ferris, J Am. Chem. Soc., 1953, 75(9), 2257).
Referring to Scheme 5, it will be obvious to those skilled in the art that comparable reagents and reaction conditions may be used to introduce a) the N,N-bis(2-aryl- or (polyfluoro)alkyl-sulfonyloxyethyl) functionality, b) the N,N-bis(2-halogenoethyl) functionality, c) the N-(2-halogenoethyl)N-bis(2-halogenoethyl) functionality, d) the N-(2-aryl- or (polyfluoro)alkyl-sulfonyloxyethyl)N-(2-halogenoethyl), or derivatives of any of the foregoing, using the corresponding internally protected β-substituted γ-amino acid precursors (γ-lactams) described in Schemes 2-4.
Referring to Scheme 5, for example in certain embodiments R1 and/or R5, R20, R40, X, X′, E, the linker L, the protecting groups PG and Q are defined as herein; one of R2, R3, and R4 in compounds of Formula (O) is -E-N(CH2—CH2—OH)2 each of the other remaining R2, R3, and R4 is hydrogen; and each of R7 and R8 is hydrogen.




Referring to Scheme 5, in certain embodiments, the N,N-bis(2-hydroxyethyl)amino group of compounds of Formula (O) may be converted to N,N-bis(2-(polyfluoro)alkyl- or arylsulfonyloxyethyl)amino groups of compounds of Formula (P) (S-alkoxy-de-chlorination) by reacting diols of Formula (O) with an excess of a suitable (perfluoro)alkyl- or aryl-sulfonyl anhydride (R40SO2)2O) (about 2.5-5 equivalents), e.g., methanesulfonyl anhydride (R40=methyl (Me), (MeSO2)2O)), in an inert solvent such anhydrous dichloromethane (DCM) or tetrahydrofuran (THF) or a mixture of any of the foregoing in the presence of an excess (about 2-10 equivalents) of a suitable base, e.g., anhydrous triethylamine (Et3N, TEA) or anhydrous pyridine, at a temperature from about 0° C. to about room temperature for about 0.5-24 hours to afford bis-sulfonic acid esters of Formula (P). The reaction may optionally be carried out in the presence of a catalytic amount (about 20 mol-%) of 4-N,N-(dimethylamino)pyridine (DMAP).
Referring to Scheme 5, in certain embodiments, using comparable reaction conditions with respect to solvents, bases, stoichiometry of reagents, temperature, catalysts, and duration as described for the reaction of diols of Formula (O) with (ployfluoro)alkyl- or aryl-sulfonyl anhydrides, diols of Formula (O) may also be reacted with a suitable alkyl- or aryl-sulfonyl halides, e.g., methanesulfonyl chloride (mesyl chloride, MsCl) (R40=Me), MeSO2Cl), to provide the desired bis-sulfonic acid esters of Formula (P).
Referring to Scheme 5, in certain embodiments N,N-bis(2-(polyfluoro)alkyl- or aryl-sulfonyloxyethyl)amino groups as in compounds of Formula (P) may be converted (halo-de-sulfonyloxy substitution) to N,N-bis(halogenoethyl)amino groups of compounds of Formula (Q) by reacting bis-sulfonyl esters of Formula (P) with an excess of a suitable alkali metal halide salt MX, e.g., lithium chloride (LiCl), lithium bromide (LiBr), sodium chloride (NaCl), sodium bromide (NaBr), or sodium iodide (NaI) (4-16 equivalents) in a suitable organic solvent, e.g., N,N-dimethylformamide (DMF), N,N-dimethylacetamide (DMAc), acetone, 2-butanone (methyl ethyl ketone, MEK), 3-methyl-2-butanone (isopropyl methyl ketone, MIPK), acetonitrile (MeCN), methanol (MeOH), tetrahydrofuran (THF), ethyl acetate (EtOAc), or a mixture of any of the foregoing, at room temperature or heated to about 50-150° C. for about 0.5-6 hours to provide compounds of Formula (Q).
Referring to Scheme 5, in certain embodiments using comparable reaction conditions with respect to solvents, temperature, and duration as described for the preparation of compounds of Formula (Q), the reaction of bis-sulfonyl esters of Formula (P) may also be carried out in the presence of about one molar equivalent of a suitable alkali metal halide salt MX, as defined herein, to provide compounds of Formula (R) bearing N-(2-halogenoethyl)-, N-(2-methylsulfonyloxyethyl) amino groups (mixed halogeno/sulfonylato N-mustards).
Referring to Scheme 5, in some embodiments compounds of Formula (Q) may be converted to mixed halogeno/sulfonylato N-mustards of Formula (R) by reacting N-mustard derivatives of Formula (Q) where X is bromo (—Br) with about 1.0 equivalent or slightly less of a suitable soluble silver sulfonate salt, e.g., silver mesylate (AgOSO2Me, AgOMs) in a polar solvent such as acetonitrile (MeCN) at about reflux temperature to provide the mixed halogeno/mesylate N-mustard of Formula (S) (methathetical reaction).
Referring to Scheme 5, in certain embodiments, using comparable reaction conditions with respect to solvents, temperature, and duration as described for the preparation of compounds of Formula (Q) and of Formula (R), the reaction of bis-halogeno N-mustards of Formula (Q) or of mixed halogeno/mesylate N-mustards of Formula (R) may also be carried out in the presence of about one molar equivalent of a suitable alkali metal halide salt MX′, as defined herein, to provide compounds of Formula (S) bearing N-(2-halogenoethyl)-, N-(2-halogeno'ethyl) amino groups (mixed halogeno N-mustards).
Reductive N-alkylation is a form of amination/alkylation that involves the reaction of an amino group with a carbonyl group to an amine in the presence of a suitable reducing agent via an intermediate imine or protonated imine. The carbonyl group component is most commonly an aldehyde or ketone functionality, the amino group is most commonly ammonia, a primary or secondary aliphatic amino group, or a primary or secondary aromatic amino group (aniline). For indirect reductive aminations, the intermediate imine may be isolated and reduced with a suitable reducing agent. For direct reductive aminations, the reaction may be carried out simultaneously, with the imine formation and reduction occurring concurrently, typically using reducing agents that are more reactive toward protonated imines than ketones, and that are stable under moderately acidic conditions, e.g., sodium cyanoborohydride (Na(CN)BH3) or sodium triacetoxyborohydride (NaB(OAc)3H.
Referring to Scheme 6, the primary amino group of compounds of Formula (T) or of Formula (U), either in a suitable salt form, e.g., a hydrochloride (HCl) salt (Ar-E-NH2.HCl) or as a free base (Ar-E-NH2) may be subjected to a reductive N-alkylation reaction using a suitable halocarbonyl compounds (X=F, Cl or, Br) or derivatives thereof, e.g., a dimethyl acetal, and reducing agents as they are well known in the art (Palani, et al., J. Med. Chem., 2005, 48(15), 4746-4749; Van Oeveren, Bioorg. Med. Chem. Lett., 2007, 17(6), 1527-1531; Delfourne, et al., Bioorg. Med. Chem., 2004, 12(15), 3987-3994; Delfourne, et al., J. Med. Chem., 2002, 47(17), 3765-3771; and Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633).
Suitable halocarbonyl compounds include, for example, 2-chloroacetic acid (ClCH2CO2H, X is Cl)), 2-chloroacetaldehyde (ClCH2CHO, X is Cl)), or 2-bromoacetaldehyde dimethylacetal (MeO)2CHCH2Br, X is Br), optionally provided as solutions in suitable solvents, e.g., a 50-wt-% solution of 2-chloroacetaldehyde (ClCH2CHO, X is Cl)) in water.
Referring to Scheme 6, suitable reducing agents for reductive N-alkylations of primary amino groups such as in compounds of Formula (T) and of Formula (U) using 2-chloroacetic acid include boranes, preferably borane-tetrahydrofuran complex (H3B.THF), and certain alkalimetal borohydrides, e.g., lithium borohydride (LiBH4) or sodium borohydride (NaBH4).
Referring to Scheme 6, the reaction is generally carried out in the presence of organic solvents such as protic solvents, e.g., methanol (MeOH), acetic acid, (HOAc), trifluoroacetic acid (TFA), 85 wt-% phosphoric acid (H3PO4), glacial acetic acid (HOAC), 98 wt-% formic acid, or water, or inert organic solvents, e.g., acetonitrile (MeCN), dichloromethane (DCM), tetrahydrofuran (THF), benzene, or equivalent mixtures of any of the foregoing at a temperature from about 0° C. to about reflux temperature and for about 05-18 hours. In embodiments where 2-chloroacetaldehyde is used, suitable reducing agents may include, for example, sodium cyanoborohydride (Na(CN)BH3), sodium triacetoxyborohydride (NaB(OAc)3H, and sodium borohydride (NaBH4).
Reduction via hydrogenation is can also be employed. Preferred hydrogenation conditions include catalytic hydrogenation, for example, using palladium on carbon (Pd/C) as the catalyst. As the hydrogen source, gaseous hydrogen (H2-gas) at pressures ranging from about atmospheric pressure to about 150 psi, or suitable ammonium salts, e.g., ammonium hydrogencarbonate (H4NHCO3), may be employed. The hydrogenation may be carried out at ambient temperature.
Referring to Scheme 6, in certain embodiments, R1 and/or R5, R20, E, the linker L, the halogeno group X, and the protecting group PG and Q are defined as herein; one of R2, R3, and R4 in compounds of Formula (T) and Formula (U) is -E-NH2, wherein E is a bond (“—”), an oxygen atom (—O—), a methylene group (—CH2—), or methylenoxy group (—CH2—O—), and wherein MH is an amino group (—NH2) so that -E-NH2 is equivalent to a) a primary aromatic amino group (—NH2, aniline), b) a primary O-aryl hydroxylamino group (—O—NH2), c) a primary aminomethyl group (—CH2—NH2), or a primary O-benzyl hydroxylamino group (—CH2—O—NH2); each of the other remaining R2, R3, and R4 is hydrogen; each of R7 and R8 is hydrogen.




Referring to Scheme 6, in certain embodiments, the primary amino group of compounds of Formula (T) or of Formula (U) may be converted to N,N-bis(2-halogenoethyl)amino groups as in compounds of Formula (V) or of Formula (W) by reacting compounds of Formula (T) or of Formula (U) with an excess of about 4-10 equivalents of a 2-halogenocarbonyl compound, e.g., a 50 wt-% solution of 2-chloroacetaldehyde in water, and an excess of about 3-8 equivalents of a suitable reducing agent, e.g., sodium cyanoborohydride (NaB(CN)H3). In certain embodiments, the reaction may be carried out in mixtures of methanol (MeOH) with trifluoroacetic acid (TFA), glacial acetic acid (HOAc), 98 wt-% formic acid (FA), or 85 wt-% phosphoric acid (H3PO4). For example, in certain embodiments, 1:1 (v/v), 2:1 (v/v), or 1:2 (v/v) mixtures MeOH/acid and reaction temperatures from about 0-40° C. and reaction times of about 0.5-18 hours are employed to provide protected N-mustards of Formula (V) or of Formula (W).
Estramustine (EmcytE, Estracit®) is an antimicrotubule chemotherapy agent indicated in the United States for the palliative treatment of metastatic and/or progressive prostate cancer. It is derivative of estrogen (specifically, estradiol) with a N-mustard-carbamate ester moiety.
Referring to Scheme 7, methods to functionalize alcohols or phenols with carbamoyl derivatives of secondary amines yielding carbamates as in, for example, compounds of Formula (Z) wherein M is oxygen (—O—) and G is oxygen (═O) include carbamoyl chlorides or p-nitrophenyl carbamates, and are well known in the art. Likewise, it is well known in the art that carbamates as in, for example, compounds of Formula (Z) wherein M is oxygen (—O—) and G is oxygen (═O) are also accessible through activation of alcohols or phenols with suitable formic ester derivatives including phosgene (COCl2), triphosgene (bis(trichloromethyl) carbonate (BTC)), or 1,1′-carbonyldiimidazole (CDI) followed by reaction with an appropriately functionalized amine such as HN(CH2—CH2—R9)2 wherein R9 is chloro (—Cl), bromo (—Br), iodo (—I), or (polyfluoro)alkyl- or aryl sulfonyloxy (—OSO2R40) or combinations thereof and R40 is defined as described herein.
Likewise and referring to Scheme 7, many methods are known in the literature and to those skilled in the art to prepare compounds of Formula (Z) related to carbamates including a) S-thiocarbamates wherein M is sulfur (—S—) and G is oxygen (═O), b)O-thiocarbamates wherein M is oxygen (—O—) and G is sulfur (═S), c) dithiocarbamates wherein M is sulfur (—S—) and G is sulfur (═S), d) ureas wherein M is nitrogen (—NR10—), and where R10 is defined as described herein, and G is oxygen (═O), or thioureas wherein M is nitrogen (—NR10—) and G is sulfur (═S).
Referring to Scheme 7, in certain embodiments a compound of Formula (X) is, for example, a) a phenol wherein E is a bond (“—”) and MH is a hydroxyl group (—OH), b) an aniline wherein E is a bond (“—”) and MH is an amino group (—NR10H), c) a thiophenol wherein E is a bond (“—”) and MH is a sulfhydryl group (—SH), d) an O-aryl hydroxylamine wherein E is oxygen (—O—) and MH is an amino group (—NR10H), e) a benzylic alcohol wherein E is methylene (—CH2—) and MH is a hydroxyl group (—OH), f) a benzylic amine wherein E is methylene (—CH2—) and MH is an amino group (—NR10H), g) a benzylic thiol wherein E is methylene (—CH2—) and MH is sulfhydryl (—SH), h) an O-benzylic hydroxylamine wherein E is methyleneoxy (—CH2—O—) and MH is an amino group (—NR10H).
Referring to Scheme 7, in certain embodiments, R1 and/or R5, R10, R20, E, M, Z, the linker L, and the protecting group PG and Q are as defined herein; one of R2, R3, and R4 in compounds of Formula (X) is -E-MH as described herein; each of the other remaining R2, R3, and R4 is hydrogen; each R7 and each R8 is hydrogen; LG is a suitable leaving group such as to chloro (—Cl), 4-nitrophenyloxy (NO2C6H4O—), or imidazole; and R9 is chloro (—Cl), bromo (—Br), iodo (—I), or (polyfluoro)alkyl- or aryl sulfonyloxy (—OS2R40) or combinations thereof, and R40 is defined as described herein.




Referring to Scheme 7, in certain embodiments the alcohol, the thiol group, or the amino group of compounds of Formula (X) may be converted to the N,N-bis(2-halogeno- or 2-sulfonyloxyethyl)carbamoyl or N,N-bis(2-halogeno- or 2-sulfonyloxyethyl)thiocarbamoyl group of compounds of Formula (Z) by reacting a compound of Formula (X) with, for example, commercial N,N-bis(2-chloroethyl)carbamoyl chloride (U.S. Pat. No. 3,299,104), wherein LG is chloro (—Cl), R9 is chloro (—Cl), and G is oxygen (═O) or known (4-nitrophenyl) N,N-bis(2-chloroethyl)carbamate where LG is 4-nitrophenol (4-NO2-Ph-O—), R9 is chloro (—Cl), and G is oxygen (═O) in suitable solvents such as pyridine, or triethylamine in 1,4-dioxane/benzene mixtures and the like at temperatures of about 0-60° C. to provide carbamate, thiocarbamate, or urea derivatives of Formula (Z).
Referring to Scheme 7, in certain embodiments the MH-group of compounds of Formula (X) may be activated to their corresponding chloroformates, thiochloroformates, or carbonyl imidazoles of Formula (Y) with, for example, phosgene, thiosphosgene, triphosgene, carbonyldiimidazole (CDI), thiocarbonyldiimidazole (TCDI), or the like, in the presence of a suitable base such as inorganic metal-carbonate, e.g., potassium carbonate (K2CO3) and bicarbonates, e.g., sodium hydrogencarbonate (NaHCO3), in suitable inert solvents known in the art. The chloroformates or thiochloroformates of Formula (Y) are subsequently converted to the corresponding carbamates of Formula (Z) through reaction with an appropriately functionalized amine such as HN(CH2—CH2—R9)2 wherein R9 is chloro (—Cl), bromo (—Br), iodo (—I), or (polyfluoro)alkyl- or aryl sulfonyloxy (—OSO2R40) or combinations thereof, and R40 is defined as described herein, e.g., commercial bis(2-chloroethyl)amine hydrochloride wherein R9 is chloro (—Cl) or 2-bromo-N-(2-bromoethyl)ethanamine wherein R9 is bromo (—Br), and in the presence of a base such as inorganic metal-carbonate, e.g., potassium carbonate (K2CO3) and bicarbonate, e.g., sodium hydrogencarbonate (NaHCO3), ethyl acetate (EtOAc), water, or mixtures of any of the foregoing to yield carbamates of Formula (Z).
In general, the biological activity of nitrogen mustards is based upon the presence of an alkylating N,N-bis(2-chloroethyl) functionality. The chemotherapeutic and cytotoxic effects are directly associated with the alkylation of DNA due to the strong electrophilic character of the N,N-bis(2-chloroethyl) functionality. Formation of covalent linkages including interstrand crosslinks (ICLs) is highly cytotoxic and involves the disruption of fundamental cellular processes including DNA replication leading to cellular death.
Because of this property, the nitrogen mustards have been used for a number of years in laboratory investigations and in the clinical treat for malignat growth. Unfortunately, the effective dose of nitrogen mustards is in many cases close to the toxic dose and it is therefore desirable to find a nitrogen mustard or a class of nitrogen mustard type compounds possessing the high carcinolytic activity of the parent compound but having modulated toxicity.
The amide linkage masks the alkylating and toxic properties of the nitrogen mustard moiety so that the total host is not subjected to undesirable toxic effects sometime encountered with nitrogen mustard therapy: the amino acid moiety of the molecule facilitates the selective delivery of the “masked” nitrogen mustard via the amino acid transport mechanism into the tumor cells, where the higher amidase activity of the tumor cell liberates the reactivated nitrogen mustard within itself. Thus, in effect it will be possible to obtain maximum effect of the nitrogen mustard on the tumor and minimum toxic effect on the host (U.S. Pat. No. 3,235,594).
Referring to Scheme 8, the amide nitrogen mustards of the present disclosure are prepared by condensing carboxylic acids of Formula (AA) wherein E is a carbonyl group (—C(═O)—) or a methylenecarbonyl group (—CH2—C(═O)—) with an appropriately functionalized amine such as HN(CH2—CH2—R9)2 wherein X is chloro (—Cl), bromo (—Br), iodo (—I), or (polyfluoro)alkyl- or aryl sulfonyloxy (—OSO2R40) or combinations thereof, and R40 is defined as described herein, to provide amides of nitrogen mustards of Formula (AB).
Referring to Scheme 8, a myriad of coupling methods is known in the art to facilitate the formation of amide bonds as in compounds of Formula (AB) from carboxylic acids of Formula (AA) (Montalbetti and Falque, Tetrahedron, 2005, 61, 10827-10852; and Valeur and Bradley, Chem. Soc. Rev., 2009, 38, 606-631).
Referring to Scheme 8, in certain embodiments, R1 and/or R5, R20, E, the linker L, and the protecting group PG and Q are defined as described herein; one of R2, R3, and R4 in compounds of Formula (AA) is -E-OH as described herein; each of the other remaining R2, R3, and R4 is hydrogen; each R7 and each R8 is hydrogen; R9 is a suitable functionalization providing the alkylation properties of the nitrogen mustard.




Referring to Scheme 8, in certain embodiments the (thio)carboxyl group of compounds of Formula (AA) may be activated as acyl halides, acyl azides, symmetrical or unsymmetrical carboxylic, carbonic, or boronic anhydrides, acyl imidazoles, activated esters, phosphonium salts, uronium salts, or ammonium salts followed by ammonolysis of the activated intermediate either after prior isolation or in situ with an appropriately functionalized amine such as HN(CH2—CH2—R9)2 to provide nitrogen mustard amides of Formula (AB).
Referring to Scheme 9, protected N-mustard functionalized β-substituted γ-amino acid precursors or protected N-mustard functionalized β-substituted γ-amino acid analog precursors or carboxylic acid (bio)isosteres of Formula (AC) or of Formula (AD) are converted to the corresponding unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE) by removing the external protecting groups and/or by opening the lactam ring (internal protection).
Referring to Scheme 9, in certain embodiments the connector group “A” of the moiety -A-N(CH2—CH2—R9)2 is a bond (“—”), oxygen (—O—), sulfur (—S—), methylene (—CH2—), methyleneoxy (—CH2—O—), oxycarbonyl (—O—C(═O)—), thiocarbonyl (—S—C(═O)—), aminocarbonyl (—NR10—C(═O)—), oxythiocarbonyl (—O—C(═S)—), thiothiocarbonyl (—S—C(═S)—), aminothiocarbonyl (—NR10—C(═S)—), methyleneoxycarbonyl (—CH2—O—C(═O)—), methylenethiocarbonyl (—CH2—S—C(═O)—), methyleneaminocarbonyl (—CH2—NR10—C(═O)—), methyleneoxythiocarbonyl (—CH2—O—C(═S)—), methylenethiothiocarbonyl (—CH2—S—C(═S)—), methyleneaminothiocarbonyl (—CH2—NR10—C(═S)—), carbonyl (—C(═O)—), methylencarbonyl (—CH2—C(═O)—), thiocarbonyl (—C(═S)—), methylenthiocarbonyl (—CH2—C(═S)—).
Referring to Scheme 9, in certain embodiments liberation of unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE) from their corresponding precursors of Formula (AC) or of Formula (AD) may be conducted under aqueous acidic conditions (hydrolysis) (Taylor, et al., Chem. Biol. Drug Des., 2007, 70(3), 216-226; Buss, et al., J. Fluorine Chem., 1986, 34(1), 83-114; Abela, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Weisz, et al., Bioorg. Med. Chem. Lett., 1995, 5(24), 2985-2988; Zheng, Bioorg., Med., Chem., 2010, 18(2), 880-886; Haines, et al., J. Med. Chem., 1987, 30, 542-547; and Matharu, et al., Bioorg., Med., Chem., Lett., 2010, 20, 3688-3691).
Referring to Scheme 9, in certain embodiments liberation of unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE) from their corresponding precursors of Formula (AD) may also be conducted under anhydrous acidic conditions (Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; Verny and Nicolas, J. Label. Cmpds, Radiopharm., 1988, 25(9), 949-955; Thorn, et al., J. Org. Chem, 1975, 40(11), 1556-1558; Baraldini, et al., J. Med. Chem., 2000, 53(14), 2675-2684; Gourdi, et al., J. Med. Chem., 1990, 33(4), 1177-1186; and Kupczyk-Subotkowska, et al., J. Drug Targeting, 1997, 4(6), 359-370).
Referring to Scheme 9, it will be obvious to those skilled in the art that protected N-mustard functionalized β-substituted γ-amino acid precursors of Formula (AA) or protected N-mustard β-substituted γ-amino acid analog or carboxylic acid (bio)isosteres precursors of Formula (AD) bearing different combinations of suitable protecting groups may also be prepared. Different combinations of protecting groups may require specific reactants and reaction conditions for effective removal of specific set of different protection groups to provide unprotected N-mustard β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid derivatives, analogs, or carboxylic acid (bio)isosteres of Formula (AE).
Referring to Scheme 9, in certain embodiments of compounds of Formula (AC), Formula (AD), and of Formula (AE) R1 and/or R5, R9, the connector group A, the protecting groups PG and Q, and the linker L are defined as described herein; R6 is an unprotected carboxylic acid, a carboxylic acid analog or a carboxylic acid (bio)isostere as defined herein; R20 is a protected carboxylic acid, a carboxylic acid analog or a carboxylic acid (bio)isostere as defined herein; one of R2, R3, and R4 is a N,N-bis-(2-functionalized)ethylamino group (nitrogen mustard group) linked to a connector A (-A-N(CH2—CH2—R9)2); each of the remaining R2, R3, and R4 is hydrogen; each of R7 and R8 is hydrogen.




Referring to Scheme 9, hydrolytic acidic ring-opening and simultaneous internal N-deprotection of compounds of Formula (AC) or hydrolytic acidic global deprotection of compounds of Formula (AD) to provide N-mustard functionalized β-substituted γ-amino acid derivatives or N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE) may be accomplished by treating protected precursors of Formula (AC) or of Formula (AD) at elevated temperatures from about 40-150° C. with aqueous mineral acids, e.g., 2 M to  ̃12 M hydrochloric acid (HCl) for about 6-24 hours. In certain embodiments, mixtures of the mineral acid with organic solvents may be used. A useful aqueous mineral acid reaction mixture to facilitate lactam ring opening or global deprotection is, e.g., a 1:1 (v/v) mixture of concentrated hydrochloric acid ( ̃12M or  ̃37 wt-% HCl) with 1,4-dioxane.
Referring to Scheme 9, other aqueous mineral acids with a non-nucleophilic anion known in the art can be used to facilitate simultaneous hydrolytic acidic ring-opening and simultaneous internal N-deprotection of compounds of Formula (AC) or hydrolytic acidic global deprotection of acid-labile or hydrolysis sensitive protecting groups of the protected carboxylic moiety, of the protected carboxylic acid (bio)isostere, or of the amino functionality of compounds of Formula (AD) to provide N-mustard functionalized β-substituted γ-amino acid derivatives or N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE).
Referring to Scheme 9, suitable mineral acids may include, for example, diluted or concentrated aqueous solutions of hydrobromic acid (HBr), hydroiodic acid (HI), sulfuric acid (H2SO4), perchloric acid (HClO4), and phosphoric acid (H3PO4), mixtures of any of the foregoing or mixtures with suitable organic solvents, e.g., 1,4-dioxane, with any of the foregoing.
It is within the ability of one skilled in the art to select specific and suitable aqueous mineral acids and reaction conditions for hydrolytic acidic ring-opening and simultaneous internal N-deprotection of compounds of Formula (AC) or hydrolytic acidic global deprotection of compounds of Formula (AD) to provide N-mustard functionalized β-substituted γ-amino acid derivatives or N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE).
Referring to Scheme 9, simultaneous global deprotection of compounds of Formula (AD) where R20 is an acid labile moiety derived from a carboxylic acid, e.g., CO2tBu, CO2-pentamethylbenzyl, CO2-(4-methoxy)benzyl, or CO2-trityl, and Q is a protected amino group derived from an acid-labile N-protecting group, e.g., N(H)Boc, N(H)trityl, N(H)(4-methoxy)phenyl-diphenylmethyl, or N(H)di-((4-methoxy)phenyl)-phenylmethyl, may also be accomplished by reaction with strong organic acids under anhydrous conditions to liberate free (unprotected)N-mustard functionalized β-substituted γ-amino acid derivatives or N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE).
In certain embodiments, strong (organic) acids useful for global deprotection under anhydrous conditions include trifluoroacetic acid (TFA), 98 wt-% formic acid (FA), methanesulfonic acid (MeSO3H), 85 wt-% phosphoric acid (H3PO4), 2 M hydrogen chloride (HCl) in diethyl ether (Et2O), 4 M hydrogen chloride (HCl) in 1,4-dioxane, or a saturated solution of HCl in ethyl acetate (EtOAc) (Li, et al., J. Org. Chem., 2006, 71, 9045-9050).
Depending of the overall sensitivity to strong (organic acids), compounds of Formula (AD) may be reacted with neat either neat strong (organic) acid or with solutions of the strong organic acid in suitable inert solvents such asdichloromethane (DCM), dichloroethane (DCE), 1,4-dioxane, diethylether (Et2O), tetrahydrofuran (THF), or toluene typically in ratios ranging from neat (organic) acid to about 10 vol-% (organic) acid in said inert solvent, and reaction temperatures ranging from about 0-50° C. for about 1-24 hours to provide unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE).
Optionally, 2-5 equivalents of a suitable scavenging agent such as triethysilane (Et3SiH) (TES), triisopropylsilane (iPr3SiH), thioanisole, or 1,2-dithioethane (HSCH2CH2HS) may be added to the reaction mixture to suppress formation of unwanted side reactions and byproducts originating, for example, from alkylation of electron-rich aromatic scaffolds or sulfide groups under global deprotection conditions disclosed herein to provide unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE).
Separation of unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE) from unreacted starting materials, unwanted byproducts, and impurities may be accomplished using, for example, solid-phase extraction (SPE) techniques, e.g., with QMA® cartridges (Waters, USA), LiChrolut® cartridges (EMD Chemicals, USA), or Whatman SAX cartridges (Whatman, USA), preparative normal or reverse phase TLC, reverse phase (RP) semi-preparative or preparative HPLC, crystallization, precipitation, or any other suitable method known in the art.
Purified unprotected N-mustard functionalized β-substituted γ-amino acid derivatives or unprotected N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bio)isosteres of Formula (AE) may be isolated using any of the methods known in the art. For example, such methods include removal of HPLC solvents (mobile phase) of the combined fractions containing the N-mustard functionalized β-substituted γ-amino acid derivatives or N-mustard functionalized β-substituted γ-amino acid analogs or carboxylic acid (bioisosteres) of Formula (AE) under reduced pressure with a rotary evaporator, or removal of (aqueous) solvent mixtures by primary lyophilization.
Any suitable method known in the art may be used to produce acid addition salts or salts including pharmaceutically acceptable acid addition salts or salts of compounds of Formula (AE).
The lyophilization may optionally be conducted in the presence of one or more equivalents of a mineral acid, optionally with a pharmaceutically acceptable counterion, to form (pharmaceutically acceptable) acid addition salts of compounds of Formula (AE). For example, one or more equivalents of hydrochloric acid (HCl) may be added prior to lyophiliation to form mono-, di-, or polyhydrochloride salts of compounds of Formula (AE) or mixtures thereof.
The lyophilization may optionally be conducted in the presence of one or more equivalents of a base, optionally with a pharmaceutically acceptable counterion, to form (pharmaceutically acceptable) salts of compounds of Formula (AE). For example, one or more equivalents of sodium hydrogen carbonate (NaHCO3) may be added prior to lyophiliation to form mono-, di-, or poly sodium salts of compounds of Formula (AE) or mixtures thereof.
A characteristic feature of solid tumors is the presence of cells at very low oxygen concentrations (hypoxia; partial pressure of oxygen in tumorous tissue of 0.05-5.0%) often surrounding areas of necrosis. There are clear links between hypoxia and the lack of response to radiotherapy and intrinsic resistance to cytotoxic therapy. It has also been demonstrated that hypoxia in tumours tends to select for a more malignant phenotype (Wilson and Hay, Nat. Rev. Canc., 2011, 11, 393-410; and Brown and Wilson, Nat. Rev. Canc., 2004, 4, 437-447).
Reductive metabolic processes are more prevalent in the hypoxic environment of solid tumors. Reductive enzyme systems have the ability to reduce certain functional groups. For example, aromatic and aliphatic N-oxides (—N+(O−)R2) are known to be reducible to the corresponding amines (—NR2), and nitro groups (—NO2) can be either reduced to the corresponding amines (—NH2) or to hydroxylamines (—NH(OH) depending on the oxygen saturation of the tissue (Denny, et al., Br. J. Canc., 1996, 74, Suppl. XXVII, S32-S38; and Nagasawa, et al., Biol. Pharm. Bull., 2006, 29(12), 2335-2342).
One promising approach for the design of cancer-cell-selective mustards exploits selective enzymatic reduction of nitroaryl compounds in the oxygen-starved (hypoxic) cells found in solid tumors. N-Oxide derivatives of nitrogen mustards including N-oxides of melphalan (PX-478; U.S. Pat. No. 7,399,785; Koh, et al., Mol. Canc. Ther., 2008, 7(1), 90-100; www.medkoo.com) and chlorambucil (Kirkatrick, et al., Anti-Cancer Drugs, 1994, 5, 467-472; Tercel, et al., J. Med. Chem., 1995, 38, 1247-1252; and U.S. Pat. No. 5,602,273) have been investigated as bioreductive prodrugs with reduced systemic toxicity in comparison to the parent drugs. Those drugs take advantage of a) the hypoxic nature, and b) the reductive nature, of certain tumorous cells. The N-oxide functional group deactivates the extremely reactive alkylating agent through capture of the lone electron pair of the parent nitrogen mustard moiety thus diminishing the alkylating properties and the off-target toxicityies associated with that. Bioreductive activation within the hypoxic tumor environment or milieu by hypoxic cells and their reductive enzyme systems is believed to restore the cytotoxicity of the free nitrogen mustards. The overall effect is an enhanced therapeutic index of the N-oxides of nitrogen mustards relative to their parent nitrogen mustards.
Depending on the pH and the nature of the solvent, particularly aprotic organic solvents, N-oxides of nitrogen mustards are known to intramolecularly rearrange to the corresponding more stable hydroxylamines with markedly less intrinsic cytotoxic potential (Tercel, et al., J. Med. Chem., 1995, 38, 1247-1252; and U.S. Pat. No. 5,602,273). However, it is also known that the hydroxylamines are able to convert back to the parent N-oxides in vivo where the latter can be reduced in the hypoxic and reductive environment of tumerous cells where the underlying nitrogen mustards exerts their cytoxicity.
Referring to Scheme 10, in certain embodiments of compounds of Formula (AF), Formula (AG), and of Formula (AH) R1 and/or R5, R6, R9, and the linker L are defined as described herein; one of R2, R3, and R4 is a N,N-bis-(2-functionalized)ethylamino group (nitrogen mustard group) linked to a connector group “A” (-A-N(CH2—CH2—R9)2) wherein the connector group “A” is a bond (“—”) or a methylene group (—CH2—); each of the remaining R2, R3, and R4 is hydrogen; and each of R7 and R8 is hydrogen.




Referring to Scheme 10, N-oxidation of the N-mustard group of compounds of Formula (AF) with a slight excess of 3-chloroperbezoic acid (meta-chloroperbenzoic acid, mCPBA) in a solvent such as dichloromethane (DCM) at about room temperature followed by work-up with aqueous sodium hydrogencarbonate furnishes the more stable hydroxylamine (through putative re-arrangement via a cyclic oxazetidinium species) of Formula (AG).
Referring to Scheme 10, N-oxidation of the N-mustard group of compounds of Formula (AF) with 3-5 equivalents of peracetic acid (MeCO(O2H)), prepared from 35 wt-% aqueous hydrogen peroxide (H2O2) in glacial acetic acid (HOAc), in a solvent such as dichloromethane (DCM) at about room temperature followed by acid extraction furnishes the corresponding N-oxide of Formula (AH).
Characterization
To determine the extent to which compounds provided by the present disclosure enter cells via the LAT1/4F2hc transporter, amino acid uptake assays into cells that are transfected with DNA encoding the LAT1 and 4F2hc subunits may be performed using, for example, HEK (human embryonic kidney) or CHO (Chinese hamster ovary) cells. Oocytes may also be injected with cRNA LAT1 and 4F2hc to express LAT1/4F2hc transporter. Compounds may be screened either for specificity for the LAT1/4F2hc transporter or for transport into cells endogenously expressing a plurality of transporters. The results of a screening method (e.g., a competition uptake, exchange or direct uptake assay) using a cell expressing the LAT1/4F2hc transporter may be compared with the results of a control cell(s) lacking the LAT1/4F2hc transporter or in the presence of a specific inhibitor of the LAT1/4F2hc transporter.
In competition experiments, the ability of a compound to specifically bind to the LAT1/4F2hc transporter is determined. A known substrate (reference substrate) for the LAT1/4F2hc transporter and a test compound are added to cells expressing the LAT1/4F2hc transporter. For example, gabapentin may be used as a reference because it demonstrates high selectivity for LAT1/4F2hc. Gabapentin is not a substrate for the intestinal amino acid transporters B0,+, ATB0+, and LAT2, whereas gabapentin may be a substrate for the organic cation transporter OCTN2 (Cundy, et al., J Pharm Exp Ther, 2004, 311(1), 315-323; and Grigat, et al., Drug Metabol Disp, 2009, 37(2), 330-337). The amount or rate of transport of the reference substrate in the presence of the test compound is compared to the amount or rate of transport of the reference substrate in the absence of the test compound. If the amount or rate of transport of the reference substrate is decreased by the presence of the test compound, the test compound binds to the LAT1/4F2hc transporter.
Compounds that bind the LAT1/4F2hc transporter can be further analyzed to determine if they are transported by the LAT1/4F2hc transporter or only compete for binding to the transporter. Transport of a compound into a cell can be determined by detecting a signal from within a cell from any of a variety of reporters. The reporter can be as simple as a label such as a fluorophore, a chromophore, a radionuclide, or a reporter can be an agent that is detected utilizing liquid chromatography-mass spectroscopy (LC/MS/MS). The same methods of detection can be used to determine if a reporter is transported from the intracellular space to the medium by administering the test compound to the outside of the cell and sampling the media for the presence of the intracellular reporter after a predetermined period of time (exchange assays).
Having determined that a compound is a substrate for LAT1/4F2hc, a further screen may be performed to determine the selectivity of the compound toward other membrane transporters. Selectivity refers to the affinities with which a compound is transported by different transporters. In order to demonstrate selectivity for LAT1/4F2hc, a compound may be tested in uptake and/or competition assays for other transporters. Transporters that could potentially transport LAT1/4F2hc substrates include SLC1A4 (ASCT1; NP_003029), SLC1A5 (ASCT2; NP_005619), SLC6A1 (GAT1; NP_003033), SLC6A5 (GlyT2; NP_004202), SLC6A6 (TauT; NP_003034), SLC6A8 (CT1; NP_005620), SLC6A9 (GlyT1; NM_008865), SLC6A11 (GAT3; NP_55044), SLC6A12 (BGT1; NP_003035), SLC6A13 (GAT2; NP_057699), SLC6A14 (ATB0,+; NP_009162), SLC6A15 (B0AT2; NP_001139807), SLC6A17 (XT1; NP_001010898), SLC6A18 (B0AT3; NP_872438), SLC6A19 (B0AT1; NP_001003841), SLC7A6 (y+LAT2; NP_001070253), SLC7A7 (y+LAT1; NP_001119577), SLC7A8 (LAT2; NP_036376), SLC7A9 (b0,+AT; NP_055085), SCL7A10 (ASC-1; NP_062823), SLC15A1(PepT1; NP_005064), SLC15A2 (PepT2; NP_066568), SLC16A1 (MCT1; NP_003042), SLC16A2 (MCT8; NP_006508), SLC16A10 (TAT1; NP_061063), SLCO1B1 (OATP1B1; NP_006437), SLCO1B3 (OATP1B3; NP_062818), SLC22A1 (OCT1; NP_003048), SLC22A2 (OCT2; NP_003049), SLC22A4 (OCTN1; NP_003050), SLC22A5 (OCTN2; NP_003051), SLC22A8 (OAT3; NP_004245), SLC36A1 (PAT1; NP_510968), SLC36A1 (PAT1; NP_510968), SLC36A2 (PAT2; NP_861441), SLC38A1 (SNAT1; NP_109599), SLC38A2 (SNAT2; NP_061849), SLC38A3 (SNAT3; NP_006832), SLC38A4 (SNAT4; NP_060488), SLC38A5 (SNAT5; NP_0277053), SLC43A1 (LAT3; NP_003618), and SLC43A2 (LAT4; NP_689559).
Human genes required for functional expression of a transporter of interest may be cloned using PCR, fully sequenced, and subcloned into plasmids that can be used for expression in mammalian cells or Xenopus laevis oocytes. Unless otherwise noted, all subunits of a transporter of interest are co-expressed in each heterologous system described in the examples. Because many mammalian cell lines exhibit high levels of amino acid transport activity, expression in Xenopus laevis oocytes can be advantageous due to the low levels of endogenous amino acid transport. To assess transport function of a specific transporter protein, it can be desirable to clone the cDNA and express the protein in cells that have low endogenous transport activity. Competition assays may be performed with labeled compounds that are optimal substrates (reference substrates) for the transporter of interest. Typically, uptake levels of a test compound are compared to uptake of a reference substrate for the transporter of interest.
Compounds of Formula (1) are substrates for LAT1/4F2hc and have a Vmax of at least 10%, 20%, and in certain embodiments, at least 50% that of gabapentin. Concomitantly, the compounds have a low affinity toward amino acid transporters of system A, system N, system ASC, and the system L transporter LAT2/4F2hc.
Biodistribution studies with normal and tumor-bearing rats may be used to determine the disposition of actively transported compounds and the selectivity of substrate accumulation in tissue that expresses the LAT1/4F2hc transporter compared with other tissue. Imaging techniques can qualitatively and quantitatively elucidate the role of transport proteins in drug disposition, for example, whole body autoradiography (WBA). WBA allows both the visualization and the quantification of radionuclide-labeled compound levels in a thin section of the whole animal. Information obtained using WBA is analogous to data obtained from diagnostic imaging, albeit at a single point in time.
Pharmaceutical Compositions
Compounds of Formula (1) or pharmaceutically acceptable salts thereof may be incorporated into pharmaceutical compositions to be administered to a patient by any appropriate route of administration including intradermal, intramuscular, intraperitoneal, intravenous, subcutaneous, intranasal, epidural, oral, peroral, sublingual, intracerebral, intravaginal, transdermal, rectal, inhalation, or topical. In certain embodiments, pharmaceutical compositions provided by the present disclosure are injectable formulations. In certain embodiments, pharmaceutical compositions provided by the present disclosure are injectable intravenous formulations. In certain embodiments, pharmaceutical compositions provided by the present disclosure are oral formulations. Oral formulations may be oral dosage forms.
Pharmaceutical compositions provided by the present disclosure may comprise a therapeutically-effective amount of a compound of Formula (1) or a pharmaceutically acceptable salt thereof together with a suitable amount of one or more pharmaceutically acceptable vehicles so as to provide a composition for proper administration to a patient. Suitable pharmaceutical vehicles and methods of preparing pharmaceutical compositions are described in the art.
In certain embodiments, a compound of Formula (1) or a pharmaceutically acceptable salt thereof may be administered by intravenous injection. Suitable forms for injection include sterile aqueous solutions or dispersions of a compound of Formula (1). In certain embodiments, a compound may be formulated in a physiological buffer solution. Prior to administration, a compound of Formula (1) or a pharmaceutically acceptable salt thereof may be sterilized by any art recognized the technique, including addition of antibacterial or antifungal agents, for example, paraben, chlorobutanol, phenol, sorbic acid, thimersol, and the like. In certain embodiments, a compound of Formula (1) or a pharmaceutically acceptable salt thereof may be sterilized by filtration before administration to a subject thereby minimizing or eliminating the need for additional sterilization agents. An injectable dosage of a compound of Formula (1) may include from about 0.01 mL to about 10 mL, from about 0.1 mL to about 10 mL, from about 0.1 mL to about 5 mL, and in certain embodiments, from about 1 mL to about 5 mL.
Pharmaceutical compositions may comprise a therapeutically effective amount of one or more compounds of Formula (1), preferably in purified form, together with a suitable amount of a pharmaceutically acceptable vehicle, so as to provide a form for proper administration to a patient. When administered to a patient, the compounds and pharmaceutically acceptable vehicles are preferably sterile. Water is a preferred vehicle when the compound is administered intravenously. Saline solutions and aqueous dextrose and glycerol solutions may also be employed as liquid vehicles, particularly for injectable solutions. Suitable pharmaceutical vehicles also include excipients such as starch, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, sodium stearate, glycerol monostearate, talc, sodium chloride, dried skim milk, glycerol, propylene, glycol, water, ethanol and the like. Pharmaceutical compositions may also contain minor amounts of wetting or emulsifying agents, or pH buffering agents. In addition, auxiliary, stabilizing, thickening, lubricating and coloring agents may be used.
Pharmaceutical compositions comprising a compound may be manufactured by means of conventional mixing, dissolving, granulating, levitating, emulsifying, encapsulating, entrapping or lyophilizing processes. Pharmaceutical compositions may be formulated in a conventional manner using one or more physiologically acceptable carriers, diluents; excipients or auxiliaries, which facilitate processing of compounds into preparations, which can be used pharmaceutically. Proper formulation is dependent upon the route of administration chosen.
Pharmaceutical compositions provided by the present disclosure may take the form of solutions, suspensions, emulsion, or any other form suitable for use. Examples of suitable pharmaceutical vehicles are described in the art.
For parenteral administration, compounds of Formula (1) may be incorporated into a solution or suspension. Parenteral administration refers to the administration by injection, for instance by intravenous, intracapsular, intrathecal, intrapleural, intratumoral, or intraperitoneal injection or intravesically. In certain embodiments, a compound of Formula (1) is administered intravenously.
A solution or suspension may also comprise at least one of the following adjuvants: sterile diluents such as water for injection, saline, fixed oils, polyethylene glycols, glycerol, propylene glycol or other synthetic solvents, antioxidants such as ascorbic acid or sodium bisulfite, buffers such as acetates, citrates or phosphates, and agents for adjustment of the tonicity such as sodium chloride or dextrose. A parenteral preparation may be enclosed into ampoules, disposable syringes or multiple dosage vessels made of glass or plastic.
For topical administration, a compound of Formula (1) may be formulated as a solution, gel, ointment, cream, suspension, etc. For transmucosal administration, penetrants appropriate to the barrier to be permeated may be used in the formulation. Such penetrants are generally known in the art. Systemic formulations include those designed for administration by injection, e.g., subcutaneous, intravenous, intramuscular, intrathecal or intraperitoneal injection, as well as those designed for transdermal, transmucosal, oral or pulmonary administration.
Systemic formulations may be made in combination with a further active agent that improves mucociliary clearance of airway mucus or reduces mucous viscosity. These active agents include, for example, sodium channel blockers, antibiotics, N-acetyl cysteine, homocysteine, sodium 2-mercaptoethane sulfonate (MESNA), and phospholipids.
When a compound is acidic or basic it may be included in any of the above-described formulations as the free acid or free base, a pharmaceutically acceptable salt, a solvate of any of the foregoing, or a hydrate of any of the foregoing. Pharmaceutically acceptable salts substantially retain the activity of the free acid or base, may be prepared by reaction with bases or acids, and tend to be more soluble in aqueous and other protic solvents than the corresponding free acid or base form.
Assessing single patient response to therapy and qualifying a patient for optimal therapy are among the greatest challenges of modern healthcare and relate to trends in personalized medicine. The novel β-substituted γ-amino acid derivatives and β-substituted γ-amino acid analogs provided by the present disclosure have a high selectivity for LAT1/4F2hc. Radio-labeled compounds for positron emission tomography (PET) or Single Photon Emission Computed Tomography (SPECT) with the same selectivity toward LAT1/4F2hc may be used to predict the efficacy of the treatment based on a single-study, case-by-case patient analysis thus excluding subjects that are expected not to benefit from treatment. PET/SPECT scans using radiolabeled LAT1/4F2hc selective substrates, once correlated to the concentration β-substituted γ-amino acid derivatives or β-substituted γ-amino acid analogs of Formula (1) can provide a three-dimensional distribution map, which can then be used for macroscopic dose calculations.
Accordingly, it is within the capability of those of skill in the art to assay and use the compounds of Formula (1) and/or pharmaceutical compositions thereof for therapy.
Therapeutic Dose
A compound of Formula (1) and/or pharmaceutical composition thereof will generally be used in an amount effective to achieve the intended purpose. For use to treat a disease such as cancer, a compound of Formula (1) and/or pharmaceutical compositions thereof, may be administered or applied in a therapeutically effective amount.
The amount of a compound of Formula (1) and/or pharmaceutical composition thereof that will be effective in the treatment of a particular disorder or condition disclosed herein will depend in part on the nature of the disorder or condition, and can be determined by standard clinical techniques known in the art. In addition, in vitro or in vivo assays may optionally be employed to help identify optimal dosage ranges. The amount of a compound of Formula (1) and/or pharmaceutical composition thereof administered will depend on, among other factors, the subject being treated, the weight of the subject, the severity of the affliction, the manner of administration and the judgment of the prescribing physician.
A compound of Formula (1) may be assayed in vitro and in vivo, for the desired therapeutic activity, prior to use in humans. For example, in vitro assays may be used to determine whether administration of a specific compound or a combination of compounds is preferred. The compounds may also be demonstrated to be effective and safe using animal model systems.
In certain embodiments, a therapeutically effective dose of a compound of Formula (1) and/or pharmaceutical composition thereof will provide therapeutic benefit without causing substantial toxicity. Toxicity of compounds of Formula (1) and/or pharmaceutical compositions thereof may be determined using standard pharmaceutical procedures and may be readily ascertained by the skilled artisan. The dose ratio between toxic and therapeutic effect is the therapeutic index. In certain embodiments, a compound of Formula (1) and/or pharmaceutical composition thereof exhibits a particularly high therapeutic index in treating disease and disorders. In certain embodiments, a dose of a compound of Formula (1) and/or pharmaceutical composition thereof will be within a range of circulating concentrations that include an effective dose with minimal toxicity.
Kits
A compound of Formula (1), a pharmaceutically acceptable salt thereof, or a pharmaceutical composition of any of the foregoing may be included in a kit that may be used to administer the compound to a patient for therapeutic purposes. A kit may include a pharmaceutical composition comprising a compound of Formula (1) suitable for administration to a patient and instructions for administering the pharmaceutical composition to the patient. In certain embodiments, a kit for use in treating cancer in a patient comprises a compound of Formula (1) or a pharmaceutically acceptable salt thereof, a pharmaceutically acceptable vehicle for administering the compound, and instructions for administering the compound to a patient.
Instructions supplied with a kit may be printed and/or supplied, for example, as an electronic-readable medium, a video cassette, an audiotape, a flash memory device, or may be published on an internet web site or distributed to a patient and/or health care provider as an electronic communication.
Therapeutic Uses
Compounds of Formula (1) may be used for treating cancer in a patient, wherein the cancerous tissue expresses the LAT1/4F2hc. In certain embodiments, the cancerous tissue expressing the LAT1/4F2hc transporter is in the brain of the patient.
Compounds of Formula (1) may be used in the treatment of a wide variety of neoplasms where elevated LAT1/4F2hc mediated uptake occurs. Compounds of Formula (1) are particularly useful for treating brain tumors, including metastases of other solid tumors, such as lung or breast cancer, in the brain.
In certain embodiments, a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) may be administered to treat a cancer known to be treated by an alkylating agent, such as, for example, melphalan.
In certain embodiments, a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) may be used to treat, for example, one or more of the following cancers: adult and childhood acute lymphoblastic leukemia (ALL), adult and childhood acute myeloid leukemia (AML), childhood adrenocortical carcinoma, a IDs-related cancers, a IDs-related lymphoma, anal cancer, appendix cancer, astrocytoma, childhood atypical teratoid/rhabdoid tumor, basal cell carcinoma (nonmelanoma), extrahepatic bile duct cancer, childhood bladder cancer, bone cancer, osteosarcoma, malignant fibrous histiocytoma, childhood craniopharyngioma, childhood brain stem glioma, adult and child brain tumor, childhood central nervous system embryonal tumors, childhood cerebellar astrocytoma, brain tumor, cerebral astrocytoma/malignant glioma, ductal carcinoma in situ, childhood ependymoblastoma, childhood ependymoma, childhood esthesioneuroblastoma, childhood medulloblastoma, childhood medulloepithelioma, childhood pineal parenchymal tumors of intermediate differentiation, supratentorial primitive neuroectodermal tumors and pineoblastoma, childhood visual pathway and hypothalamic glioma, childhood brain and spinal cord tumors, adult and childhood breast cancer, male breast cancer, childhood bronchial tumors, hematopoetic tumors of the lymphoid lineage, hematopoetic tumors of the myeloid lineage, burkitt lymphoma, childhood carcinoid tumor, gastrointestinal carcinoid tumor, carcinoma of head and neck, childhood central nervous system embryonal tumors, primary central nervous system lymphoma, childhood cerebellar astrocytoma, cerebral astrocytoma/malignant glioma, childhood cervical cancer, childhood cancers, childhood chordoma, chronic lymphocytic leukemia (CLL), chronic myeloproliferative disorders, colorectal cancer, cutaneous t-cell lymphoma, childhood central nervous system embryonal tumors, desmoplastic small round cell tumor, endometrial cancer, childhood ependymoblastoma, childhood ependymoma, esophageal cancer, childhood esophageal cancer, ewing family of tumors, childhood extracranial germ cell tumor, extragonadal germ cell tumor, extrahepatic bile duct cancer, dye cancer, Intraocular melanoma, retinoblastoma, gallbladder cancer, gastric (stomach) cancer, childhood gastric (stomach) cancer, gastrointestinal carcinoid tumor, gastrointestinal stromal tumor (gIst), childhood gastrointestinal stromal cell tumor, childhood extracranial germ cell tumor, extragonadal germ cell tumor, ovarian germ cell tumor, gestational trophoblastic tumor/disease, adult glioma, glioblastoma, childhood brain stem, childhood cerebral astrocytoma, childhood visual pathway and hypothalamic glioma, hairy cell leukemia, childhood heart cancer, head and neck cancer, childhood head and neck cancer, adult (primary) hepatocellular (liver) cancer, childhood (primary) hepatocellular (liver) cancer, adult Hodgkin lymphoma, childhood Hodgkin lymphoma, hypopharyngeal cancer, childhood hypothalamic and visual pathway glioma, intraocular melanoma, pancreatic neuroendocrine tumors (islet cell tumors), endocrine pancreas tumors (islet cell tumors), Kaposi sarcoma, kidney (renal cell) cancer, kidney cancer, laryngeal cancer, childhood laryngeal cancer, adult acute lymphoblastic leukemia, childhood acute lymphoblastic leukemia, adult acute myeloid leukemia, childhood acute myeloid leukemia, chronic myelogenous leukemia (cml), hairy cell leukemia, lip and oral cavity cancer, adult primary liver cancer, childhood primary liver cancer, non-small cell lung cancer, small cell lung cancer, a IDs-related lymphoma, Burkitt lymphoma, t-cell lymphoma, b-cell lymphoma, cutaneous t-cell lymphoma, adult Hodgkin lymphoma, childhood Hodgkin lymphoma, adult non-Hodgkin lymphoma, childhood non-Hodgkin lymphoma, primary central nervous system lymphoma, langerhans cell histiocytosis, Waldenstrom macroglobulinemia, malignant fibrous histiocytoma of bone and osteosarcoma, childhood medulloblastoma, childhood medulloepithelioma, melanoma, intraocular (dye) melanoma, Merkel cell carcinoma, adult malignant mesothelioma, childhood mesothelioma, primary metastatic squamous neck cancer with occult, mouth cancer, myelodysplastic/myeloproliferative neoplasms, midline tract carcinoma involving nUt gene, childhood multiple endocrine neoplasia syndrome, multiple myeloma/plasma cell neoplasm, mycosis fungoides, myelodysplastic syndromes myelodysplastic/myeloproliferative diseases, chronic myelogenous leukemia, adult acute myeloid leukemia, childhood acute myeloid leukemia, multiple myeloma, chronic myeloproliferative disorders, malignant germ cell tumors, nasal cavity and paranasal sinus cancer, nasopharyngeal cancer, childhood nasopharyngeal cancer, neuroblastoma, adult non-Hodgkin lymphoma, childhood non-Hodgkin lymphoma, non-small cell lung cancer, childhood oral cancer, lip and oral cavity cancer, oropharyngeal cancer, osteosarcoma and malignant fibrous histiocytoma of bone, childhood ovarian cancer, ovarian epithelial cancer, ovarian germ cell tumor, ovarian low malignant potential tumor, pancreatic cancer, childhood pancreatic cancer, islet cell tumors, childhood papillomatosis, paranasal sinus and nasal cavity cancer, parathyroid cancer, penile cancer, pharyngeal cancer, pheochromocytoma, childhood pineal parenchymal tumors of intermediate differentiation, childhood pineoblastoma and supratentorial primitive neuroectodermal tumors, pituitary tumor, paraganglioma, plasma cell neoplasm/multiple myeloma, pleuropulmonary blastoma, childhood pleuropulmonary blastoma, primary central nervous system (cns) lymphoma, pregnancy and breast cancer, primary central nervous system lymphoma, prostate cancer, rectal cancer, renal cell (kidney) cancer, childhood renal cell (kidney) cancer, renal pelvis and ureter, transitional cell cancer, respiratory tract carcinoma involving the nUt gene on chromosome 15, retinoblastoma, childhood rhabdomyosarcoma, salivary gland cancer, childhood salivary gland cancer, sarcoma (dwing family of tumors), Kaposi sarcoma, adult soft tissue sarcoma, childhood soft tissue sarcoma, uterine sarcoma, sézary syndrome, skin cancer (nonmelanoma), childhood skin cancer, melanoma, Merkel cell skin carcinoma, small cell lung cancer, small intestine cancer, adult soft tissue sarcoma, childhood soft tissue sarcoma, squamous cell carcinoma (nonmelanoma), primary and metastatic squamous neck cancer with occult, stomach (gastric) cancer, childhood stomach (gastric) cancer, childhood supratentorial primitive neuroectodermal tumors, cutaneous t-cell lymphoma, testicular cancer, throat cancer, thymoma and thymic carcinoma, childhood thymoma and thymic carcinoma, thyroid cancer, childhood thyroid cancer, gestational trophoblastic tumor, adult unknown primary site, carcinoma of, childhood cancer of unknown primary site, unusual cancers of childhood, transitional cell cancer of ureter and renal pelvis, urethral cancer, endometrial uterine cancer, uterine sarcoma, vaginal cancer, childhood vaginal cancer, childhood visual pathway and hypothalamic glioma, vulvar cancer, Waldenstrom macroglobulinemia, Wilms tumor, and women's cancers.
In certain embodiments, a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) may be used to treat, for example, one or more of the following cancers wherein the cancer is selected from any of the primary adult and childhood brain and CNS cancers including glioblastoma (GBM) and astrocystoma, skin cancers including melanoma, lung cancers including small cell lung cancers, non-small cell lung cancers (NSCLC), and large cell lung cancers, breasts cancers including triple negative breast cancer (TNBC), blood cancers including myelodysplastic syndrome (MDS), multiple myeloma (MM), and acute myeloid leukemia (AML), prostate cancer including castrate resistant prostate cancer (CRPC), liver cancers including hepatocellular carcinoma (HCC), esophageal and gastric cancers, and any systemic and central metastases of any of the foregoing.
Compounds of Formula (1) maybe used to treat a cancer in which there is differential LAT1/4F2hc transport activity relative to surrounding tissue and/or tissue in other body organs. Patients having a tumor exhibiting a greater LAT1/4F2hc transport activity than non-diseased tissue are expected to respond more favorably to treatment with a therapeutic agent that is a substrate for the LAT1/4F2hc transporter and to experience fewer adverse effects associated with the effects of the therapeutic agent on non-diseased tissue. Compounds of Formula (1) are therapeutic agents, are substrates for the LAT1/4F2hc transporter, and exhibit cytotoxicity.
The amount of a compound of Formula (1) that will be effective in the treatment of a cancer will depend, at least in part, on the nature of the disease, and may be determined by standard clinical techniques known in the art. In addition, in vitro or in vivo assays may be employed to help identify optimal dosing ranges. Dosing regimens and dosing intervals may also be determined by methods known to those skilled in the art. The amount of compound of Formula (1) administered may depend on, among other factors, the subject being treated, the weight of the subject, the severity of the disease, the route of administration, and the judgment of the prescribing physician.
For systemic administration, a therapeutically effective dose may be estimated initially from in vitro assays. Initial doses may also be estimated from in vivo data, e.g., animal models, using techniques that are known in the art. Such information may be used to more accurately determine useful doses in humans. One having ordinary skill in the art may optimize administration to humans based on animal data.
A dose of compound of Formula (1) and appropriate dosing intervals may be selected to maintain a sustained therapeutically effective concentration of the compound of Formula (1) in the blood of a patient, and in certain embodiments, without exceeding a minimum adverse concentration.
In certain embodiments, pharmaceutical compositions comprising a compound of Formula (1) may be administered once per day, twice per day, and in certain embodiments at intervals of more than once per day. Dosing may be provided alone or in combination with other drugs and may continue as long as required for effective treatment of the disease. Dosing may also be undertaken using continuous or semi-continuous administration over a period of time. Dosing includes administering a pharmaceutical composition to a mammal, such as a human, in a fed or fasted state.
A pharmaceutical composition may be administered in a single dosage form or in multiple dosage forms or as a continuous or an accumulated dose over a period of time. When multiple dosage forms are used the amount of compound of Formula (1) contained within each of the multiple dosage forms may be the same or different.
Suitable daily dosage ranges for administration may range from about 2 mg to about 50 mg of a compound of Formula (1) per kilogram body weight.
Suitable daily dosage ranges for administration may range from about 1 mg to about 100 mg of a compound of Formula (1) per square meter (m2) of body surface.
In certain embodiments, a compound of Formula (1) may be administered to treat cancer in a subject in an amount from about 50 mg to about 2,000 mg per day, from about 100 mg to about 1,500 mg per day, from about 200 mg to about 1,000 mg per day, or in any other appropriate daily dose.
In certain embodiments, pharmaceutical compositions comprising a compound of Formula (1) may be administered to treat cancer in a subject so as to provide a therapeutically effective concentration of a compound of Formula (1) in the blood or plasma of the subject. In certain embodiments, a therapeutically effective concentration of a compound of Formula (1) in the blood or plasma of a subject is from about 1 μg/mL to about 60 μg/mL, from about 2 μg/mL to about 50 μg/mL, from about 5 μg/mL to about 40 μg/mL, from about 5 μg/mL to about 20 μg/mL, and in certain embodiments, from about 5 μg/mL to about 10 μg/mL. In certain embodiments, a therapeutically effective concentration of a compound of Formula (1) in the blood or plasma of a subject is at least about 2 μg/mL, at least about 5 μg/mL, at least about 10 μg/mL, at least about 15 μg/mL, at least about 25 μg/mL, and in certain embodiments, at least about 30 μg/mL. In certain embodiments, a therapeutically effective concentration of a compound of Formula (1) in the blood or plasma of a subject is less than an amount that causes unacceptable adverse effects including adverse effects to homeostasis. In certain embodiments, a therapeutically effective concentration of a compound of Formula (1) in the blood or plasma of a subject is an amount sufficient to restore and/or maintain homeostasis in the subject.
In certain embodiments, pharmaceutical compositions comprising a compound of Formula (1) may be administered to treat cancer in a subject so as to provide a therapeutically effective concentration of a compound of Formula (1) in the blood or plasma of a subject for an extended period of time such as, for example, for at least about 4 hours, for at least about 6 hours, for at least about 8 hours, for at least about 10 hours, and in certain embodiments, for at least about 12 hours.
The amount of a compound of Formula (1) administered may vary during a treatment regimen.
Pharmaceutical compositions provided by the present disclosure may further comprise one or more pharmaceutically active compounds in addition to a compound of Formula (1). Such compounds may be provided to treat the cancer being treated with the compound of Formula (1) or to treat a disease, disorder, or condition other than the cancer being treated with the compound of Formula (1).
In certain embodiments, a compound of Formula (1) may be used in combination with at least one other therapeutic agent. In certain embodiments, a compound of Formula (1) may be administered to a patient together with another compound for treating cancer in the subject. In certain embodiments, the at least one other therapeutic agent may be a different compound of Formula (1). A compound of Formula (1) and the at least one other therapeutic agent may act additively or, and in certain embodiments, synergistically. The at least one additional therapeutic agent may be included in the same pharmaceutical composition or vehicle comprising the compound of Formula (1) or may be in a separate pharmaceutical composition or vehicle. Accordingly, methods provided by the present disclosure further include, in addition to administering a compound of Formula (1), administering one or more therapeutic agents effective for treating cancer or a different disease, disorder or condition than cancer. Methods provided by the present disclosure include administration of a compound of Formula (1) and one or more other therapeutic agents provided that the combined administration does not inhibit the therapeutic efficacy of a compound of Formula (1) and/or does not produce adverse combination effects.
In certain embodiments, pharmaceutical compositions comprising a compound of Formula (1) may be administered concurrently with the administration of another therapeutic agent, which may be part of the same pharmaceutical composition as, or in a different pharmaceutical composition than that comprising a compound of Formula (1). A compound of Formula (1) may be administered prior or subsequent to administration of another therapeutic agent. In certain embodiments of combination therapy, the combination therapy may comprise alternating between administering a compound of Formula (1) and a composition comprising another therapeutic agent, e.g., to minimize adverse drug effects associated with a particular drug. When a compound of Formula (1) is administered concurrently with another therapeutic agent that potentially may produce an adverse drug effect including, for example, toxicity, the other therapeutic agent may be administered at a dose that falls below the threshold at which the adverse drug reaction is elicited.
In certain embodiments, pharmaceutical compositions comprising a compound of Formula (1) may be administered with one or more substances to enhance, modulate and/or control release, bioavailability, therapeutic efficacy, therapeutic potency, stability, and the like of a compound of Formula (1). For example, to enhance the therapeutic efficacy of a compound of Formula (1), a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) may be co-administered with one or more active agents to increase the absorption or diffusion of the compound of Formula (1) from the gastrointestinal tract to the systemic circulation, or to inhibit degradation of the compound of Formula (1) in the blood of a subject. In certain embodiments, a pharmaceutical composition comprising a compound of Formula (1) may be co-administered with an active agent having pharmacological effects that enhance the therapeutic efficacy of the compound of Formula (1).
In certain embodiments, a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) may be administered in conjunction with an agent known or believed to be effective in treating cancer in a patient.
For example, in certain embodiments, a compound of Formula (1) or a pharmaceutical composition comprising a compound of Formula (1) may be administered in conjunction with another chemotherapeutic agents, such as, for example, N-acetyl cysteine (NAC), adriamycin, alemtuzumab, amifostine, arsenic trioxide, ascorbic acid, bendamustine, bevacizumab, bortezomib, busulfan, buthionine sulfoxime, carfilzomib, carmustine, clofarabine, cyclophosphamide, cyclosporine, cytarabine, dasatinib, datinomycin, defibrotide, dexamethasone, docetaxel, doxorubicin, etoposide, filgrastim, floxuridine, fludarabine, gemcitabine, interferon alpha, ipilimumab, lenalidomide, leucovorin, melphalan, mycofenolate mofetil, paclitaxel, palifermin, panobinostat, pegfilrastim, prednisolone, prednisone, revlimid, rituximab, sirolimus, sodium 2-mercaptoethane sulfonate (MESNA), sodium thiosulfate, tacrolimus, temozolomide, thalidomide, thioguanine, thiotepa, topotecan, velcade, or a combination of any of the foregoing. In certain embodiments, a compound of Formula (1) and/or pharmaceutical compositions thereof can be used in combination therapy with other chemotherapeutic agents including one or more antimetabolites such as folic acid analogs; pyrimidine analogs such as fluorouracil, floxuridine, and cytosine arabinoside; purine analogs such as mercaptopurine, thiogunaine, and pentostatin; natural products such as vinblastine, vincristine, etoposide, tertiposide, dactinomycin, daunorubicin, doxurubicin, bleomycin, mithamycin, mitomycin C, L-asparaginase, and interferon alpha; platinum coordination complexes such as cis-platinum, and carboplatin; mitoxantrone; hydroxyurea; procarbazine; hormones and antagonists such as prednisone, hydroxyprogesterone caproate, medroxyprogesterone acetate, megestrol acetate, diethylstilbestrol, ethinyl estradiol, tamoxifen, testosterone propionate, fluoxymesterone, flutamide, and leuprolide, anti-angiogenesis agents or inhibitors such as angiostatin, retinoic acids, paclitaxel, estradiol derivatives, and thiazolopyrimidine derivatives; apoptosis prevention agents; and radiation therapy.
In certain embodiments, a compound of Formula (1) may be coadministered with a compound that inhibits DNA repair such as, for example, O6-benzylguanine (O6-BG). In certain embodiments, a compound of Formula (1) may be coadministred with a compound that blocks and/or inhibits transporters other than LAT1 such as, for example, amino acids. In certain embodiments, compounds of Formula (1) may be administered to a patient together with one or more amino acids such as, for example, arginine (Arg), serine (Ser), lysine (Lys), asparagine (Asn), glutamine (Gln), threonine (Thr), or mixtures of any of the foregoing. In certain embodiments, co-administration of amino acids is intended to saturate amino acid transporters that interact with compounds of Formula (1) and thereby increase the selectivity for LAT1.
The efficacy of administering a compound of Formula (1) for treating cancer may be assessed using in vitro and animal studies and in clinical trials.
The suitability of compounds of Formula (1) and/or pharmaceutical compositions thereof in treating cancers listed above may be determined by methods described in the art. For example, screens developed to demonstrate the anti-tumor activity of oncolytic agents are known (Miller, et al., J Med Chem, 1977, 20(3), 409-413; Sweeney, et al., Cancer Res, 1978, 38(9), 2886-2891; and Weiss and Von Hoff, Semin Oncol, 1985, 12(3 Suppl 4), 69-74). Accordingly, it is well with the capability of those of skill in the art to assay and use the compounds and/or pharmaceutical compositions thereof to treat the above diseases or disorders.
Methods provided by the present disclosure have use in animals, including mammals, such as in humans.
General Experimental Protocols
All reagents and solvents were purchased from commercial suppliers and used without further purification or manipulation.
Proton NMR spectra were recorded on a Varian Mercury Plus300 MHz Spectrometer equipped with an Oxford magnet, a Sun Sunblade 150 host computer, a Solaris operating system, VNMR data processing software, and a HP LaserJet printer. CDCl3 (99.8% D), MeOH-d4 (CD3OD, 99.8+% D), deuteroxide (D2O) (99.8+% D) were used as recording solvents unless otherwise noted. The CHCl3, MeOH-d3, HDO solvent signals or tetramethylsilane (TMS) were used for calibration of the individual spectra.
Analytical thin layer chromatography (TLC) was performed using EMD Millipore aluminum-backed TLC sheets (EMD5554-7) pre-coated with silica gel 60 F254 (200 μm thickness, 60 Å pore size) where F254 is a fluorescent indicator with a 254 nm excitation wavelength. An ENF-240C Spectroline® UV-lamp (Spectronics Corporation, USA) was used for TLC detection and visualization. Dyeing or staining reagents for TLC detection and visualization, e.g., an ethanolic ninhydrin solution or a 0.2 wt-% aqueous potassium permanganate (KMnO4) solution, were prepared according methods known in the art.
Analytical LC/MS was performed on a Shimadzu LC/MS-2020 Prominence Series system equipped with CBM-20A communication bus module (Shimadzu 228-45012-32), a SPD-20AV UV/VIS detector (Shimadzu 228-45004-32), a SIL-20AC autosampler (Shimadzu 228-45136-32), DGU-20A5 degasser (Shimadzu 228-45019-32), two LC-20AD XP HPLC pumps (Shimadzu 228-45137-32), an Agilent Zorbax 5 μm XDB-C18 2.1×50 mm column (Agilent 960 967-902), and a commercial desktop computer and printer for data computation. Gradients of water (solvent A) (Arrowhead, Nestle North America, Inc.) and acetonitrile (MeCN; solvent B) (EMD AX0145-1 or Aldrich CHROMASOLV® 439134) containing 0.075 vol-% of formic acid (EMD FX0440-7) were used in analytical LC/MS analyses.
Analytical LC/UV was performed on an Agilent 1100 Series system equipped with an Agilent 1100 Series degasser (Agilent G1379A), an Agilent 1100 Series quad pump (Agilent G1311A), an Agilent 1100 Series autosampler (ALS) (Agilent G1329A), an Agilent 1100 Series COLCOM (Agilent G1316A), a Phenomenex Gemini C18 5 μm 110 Å pore size 150×4.6 mm HPLC column (Phenomenex 00F-4435-E0), a Compaq Presario personal computer, and a HP LaserJet P2015 printer for data computation. Gradients of water (solvent A) (Arrowhead, Nestle North America, Inc.) and acetonitrile (MeCN; solvent B) (EMD AX0145-1 or Aldrich CHROMASOLV® 439134) containing 0.075 vol-% of formic acid (EMD FX0440-7) were used in analytical LC/UV analyses.
Preparative HPLC was conducted with a Varian ProStar Series system equipped with a Model 340 UV-C UV-VIS detector, a Model 210 solvent delivery module, a Hamilton PRP-112-20 μm 100 Å 21.2×250 mm preparative HPLC column (Hamilton 79428), and a commercial desktop personal computer for data computation. Gradients of water (solvent A) (Arrowhead, Nestle North America, Inc.) and acetonitrile (MeCN; solvent B) (EMD AX0145-1 or Aldrich CHROMASOLV® 439134) containing 0.1 vol-% of formic acid (EMD FX0440-7) were used for preparative HPLC purifications.
Compound isolation from aqueous solvent mixtures, e.g., acetonitrile/water/0.1 vol-% formic acid, was accomplished by primary lyophilization of pooled and frozen (after freeze drying) fractions under reduced pressure at room temperature using manifold freeze dryers such as Heto Drywinner DW 6-85-1, Heto FD4, or VIRTIS Freezemobile 25 ES equipped with a high vacuum pump. Optionally, and if the isolated compound had ionizable functional groups such as an amino group or a carboxylic acid, the lyophilization process was conducted in the presence of an excess (about 1.1 to 5.0 equivalents) of 1.0 M hydrochloric acid (HCl) to yield the purified compound(s) as the corresponding hydrochloride salt (HCl-salt), dihydrochloride salts, and/or the corresponding protonated free carboxylic acid. Melting points were determined in duplicate with a SRS OptiMelt MPA-100 automated melting point system with digital imaging processing technology and are uncorrected (Stanford Research Systems, USA).
Filtrations were conducted using commercial Celite® 545 (EMD CX0574-1) which was compressed in to glass Büchner-funnels to create a plug of 2-5 cm thickness. Reaction mixtures containing precipitated reaction side products or heterogenous catalyst residues were filtered off using standard techniques. Care must be taken filtering off activated catalysts or finely dispersed metals (ignition!).
Unless otherwise noted, aqueous work-up typically constitutes dilution of a crude reaction product, with or without residual reaction solvent, with 1.0 M hydrochloric acid (HCl) or a saturated aqueous solution of ammonium chloride (NH4Cl), multiple extraction with an organic solvent, e.g., ethyl acetate (EtOAc), diethyl ether (Et2O), or dichloromethane (DCM), washing with water, a saturated aqueous solution of sodium hydrogencarbonate (NaHCO3), and brine (saturated aqueous solution of sodium chloride (NaCl)), drying of the organic phase (combined organic extracts) over anhydrous magnesium sulfate (MgSO4) (EMD MX0075-1) or sodium sulfate (Na2SO4) (EMD SX0760E-3), filtration, washing of the filter residue, and evaporation of the combined filtrates under reduced pressure using a rotary evaporator at room or elevated temperature followed by compound purification e.g., silica gel column chromatography, crystallization or titruation.
Silica gel column chromatography was conducted with silica gel (about 100-200 mL silica gel per gram of compound) 600.04-0.063 mm (40-63 μm, 230-400 mesh) (EMD Millipore EM1.09385.9026/EM1.09385.1033/EM1.09385.2503) using single solvents or mixtures of suitable solvents, e.g., ethyl acetate (EtOAc) and hexane or dichloromethane (DCM) and methanol (MeOH), as determined by TLC. Samples/fractions containing desired product detected by analytical TLC and/or analytical LC/MS, or LC/UV were pooled and the solvents were removed under reduced pressure using a Heidolph Laborota 4001 Efficient rotary evaporator (Heidolph, Germany) (Heidolph 519-10000-01-5) equipped with a HB digit heating bath (Heidolph 517-01002-01-4), and a Rotavac valve control vacuum pump (Heidolph 591-00130-01-0).
Chemical names were generated using the ChemDraw Ultra 12.0 (CambridgeSoft, Cambridge, Mass., USA) nomenclature program.
Description 1
General Procedure for Aromatic Nitration
Variant A:
Adapting literature known protocols (Harmon, et al., U.S. Pat. No. 5,959,113; International Application Publication No. WO 2007/021937; International Application Publication No. WO 2008/021369; U.S. Patent Publication No. 2008/0045534; International Application Publication No. WO 2005/110416; and Palmer, et al., J. Med. Chem., 1996, 39(13), 2518-2528), a solution of the aromatic aldehyde or ketone (20 mmol) is dissolved in glacial acetic acid (35 mL). The solution is cooled to about 0° C. (ice bath). The solvent may solidify. To the reaction mixture is added white fuming nitric acid (min. 90 wt-% HNO3) (35-70 mL) using an addition funnel upon which the reaction mixture becomes liquid again. The reaction mixture is stirred with slow warming to room temperature and followed by TLC and/LC/MS to completion. The reaction mixture is poured onto crushed ice (150-300 g). Upon complete melting of the ice, the aqueous phase is extracted with dichloromethane (DCM). The aqueous phase is extracted with DCM (2×) and the combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (2×), and brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents were evaporated under reduced pressure using a rotary evaporator. The crude material is purified by silica gel column chromatography or is re-crystallized. Nitration regioisomers may also be separated by silica gel chromatography.
Variant B:
Adapting literature known protocols (Svenstrup, et al., ChemMedChem, 2008, 3(10), 1604-1615), the aromatic aldehyde or ketone (20 mmol) is added to concentrated sulfuric acid (conc. H2SO4) (6 mL) (exothermic!) while the temperature is maintained below 5° C. A cold mixture of conc. H2SO4 (3 mL) and white fuming nitric acid (min. 90 wt-% HNO3) (d>1.5 g/mL, 2 mL) is added dropwise (very exothermic!) whilst keeping the temperature under 5° C. (acetone/solid CO2 cooling bath). The reaction mixture is stirred at this temperature and followed by TLC and/LC/MS to completion. Work-up and product isolation and purification are conducted as described for Variant A.
Description 2
General Procedure for the Horner-Wadsworth-Emmons Olefination
Variant A:
Adapting literature known protocols (Blanchette, et al., Tetrahedron Lett., 1984, 25, 2183-2186; Rathke and Novak, J. Org. Chem., 1985, 50, 2624-2627; and Claridge, et al., Org. Lett., 2008, 10(23), 5437-5440), a solution of a trialkyl phosphonoacetate (20-25 mmol), triethylamine (Et3N, TEA), diisopropylethylamine (DIPEA, Hinigs-base), or 1,8-diazabicylco[5.4.0]undec-7-ene (DBU) (22-27.5 mmol), and anhydrous lithium bromide (LiBr), lithium chloride (LiCl), magnesium bromide (MgBr2) (24-30.0 mmol) in anhydrous acetonitrile (MeCN) or tetrahydrofuran (THF) (20-40 mL) is cooled to about 0° C. (ice bath). Solid aldehyde (20 mmol) or a solution of the aldehyde (20 mmol) in a small amount of MeCN or THF is added in small portions. The reaction mixture is stirred with warming to room temperature for 1 to 12 hours under a nitrogen atmosphere. The reaction is monitored by TLC and/or LCMS to completion. The reaction is quenched by addition of water. The majority of the volatiles (THF) may be evaporated under reduced pressure (rotary evaporator; ambient bath temperature) prior to further work-up. The residue is diluted with 1.0 M hydrochloric acid and extracted with ethyl acetate (EtOAc). The aqueous phase is extracted with additional EtOAc (2×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. The crude material is purified by silica gel column chromatography or is re-crystallized. Geometric isomers ((E)/(Z)-isomeric mixtures) may also be separated by silica gel chromatography.
Variant B:
Adapting literature known protocols (U.S. Pat. No. 6,313,312; and Bryans, et al., J. Med. Chem. 1998, 41, 1838-1845), a solution of a trialkyl phosphonoacetate (22-24 mmol) in anhydrous N,N-dimethylformamide (DMF) (80 mL) is cooled to about 0° C. (ice bath) under a nitrogen atmosphere. Sodium hydride (60 wt-% suspension of NaH in mineral oil) (22-25 mmol) is added in small portions (H2-gas evolution and exotherm!) under a nitrogen blanket. The reaction mixture is stirred at this temperature until gas evolution has ceased (about 30-60 minutes). The aldehyde or ketone (20 mmol) is added either in solid form in small portions or dropwise as a solution in a small amount of anhydrous DMF. The reaction mixture is stirred with warming to room temperature for 1-12 hours under a nitrogen atmosphere. The reaction is monitored by TLC and/or LCMS to completion. Work-up and product isolation and purification are conducted as described for Variant A.
Description 3
General Procedure for the 1,4-Conjugate Addition of Nitroalkane
Adapting literature known protocols (Altenbach, et al., J. Med. Chem. 2004, 47, 3220-3235; Bryans, et al., J. Med. Chem. 1998, 41, 1838-1845; Marivet, et al., J. Med. Chem. 1989, 32, 1450-1457; Ono, et al., Synthesis, 1984, 226-227; Bunce, et al., Org. Pre. Proc. Int., 1987, 19(6), 471-475; Crosby, et al., Synlett, 2010, 539-542; Roberts, et al., Bioorg. Med. Chem. Lett., 2009, 19(11), 3113-3117; and Whitlock, et al., Bioorg. Med. Chem. Lett., 2009, 19(11), 3118-3121), the α,β-unsaturated ester (15 mmol) is dissolved in acetonitrile (MeCN) or tetrahydrofuran (THF) (15-20 mL) and nitroalkane ( ̃150 mmol). Depending on solubility, the α,β-unsaturated ester (15 mmol) may also be dissolved in neat nitroalkane (25 mL). The solution is cooled to about 0° C. (ice bath). To the cooled reaction mixture is drop-wise added neat 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (15-17 mmol). The reaction mixture is stirred overnight with gradual warming to room temperature or heated to 50-70° C. for 1-24 hours. The reaction is followed by TLC and/or LC/MS to completion. Alternatively, tetramethyl guanidine (TMG) (1-2 mmol) or 1.0 M tetrabutylammonium fluoride (Bu4NF, TBAF) in THF) (15 mL, 15 mmol) can be used as a base. The reaction mixture is diluted and acidified with 1.0 M hydrochloric acid (pH<2). The aqueous phase is extracted with ethyl acetate (EtOAc). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. The crude material is purified by silica gel column chromatography or is re-crystallized.
Description 4
General Procedure for the Raney-Nickel Catalyzed Reduction and Lactamization
Adapting literature known protocols (Altenbach, et al., J. Med. Chem. 2004, 47, 3220-3235; Bryans, et al., J. Med. Chem. 1998, 41, 1838-1845; Marivet, et al., J. Med. Chem. 1989, 32, 1450-1457; Ono, et al., Synthesis, 1984, 226-227; Bunce, et al., Org. Pre. Proc. Int., 1987, 19(6), 471-475; Crosby, et al., Synlett, 2010, 539-542; Roberts, et al., Bioorg. Med. Chem. Lett., 2009, 19(11), 3113-3117; and Whitlock, et al., Bioorg. Med. Chem. Lett., 2009, 19(11), 3118-3121), a slurry of active Raney®-3202 nickel (5-10 mL) is washed with distilled water (3×) (pH of supernatant  ̃8-8.5) and 200-proof ethanol (EtOH) (3×). The catalyst is transferred with EtOH (2×10 mL) into a 500 mL Parr hydrogenation vessel containing a solution of the 4-nitrobutanoate (10 mmol) in EtOH (10-30 mL). After three evacuation/refill cycles, the reaction mixture is shaken at room temperature for 4-24 hours at a hydrogen pressure of about 50-60 psi. The reaction is followed by TLC and/or LC/MS to completion. The supernatant is decanted off and the catalyst is thoroughly washed with methanol (MeOH) and decanted. The combined organic solutions are filtered over a short plug of Celite® 545 as filter aid (about 2 cm) and the alcoholic solvents are evaporated under reduced pressure using a rotary evaporator. The ratio of cyclized (γ-lactamized) reaction product vs. non-cyclized reduction product is determined by 1H NMR analysis (300 MHz, CDCl3) and/or TLC and LC/MS. To complete lactam formation of non-cyclized material, the crude material is dissolved/suspended in a sealed tube in toluene and heated to about 70-95° C. (oil bath temperature) for 1-12 h. Alternatively, the crude material is dissolved in MeOH and heated with slow evaporation of the solvent for 1-6 h. After removal of the solvent under reduced pressure, the crude material is purified by silica gel column chromatography or is re-crystallized.
Description 5
General Procedure for the Reduction of Benzylic Ketones to Benzylic Alcohols
Adapting literature known protocols (Felder, et al., J. Med. Chem., 1970, 13(3), 559-561; Svenstrup, et al., ChemMedChem, 2008, 3(10), 1604-1615; and Shen and Jensen, DE Patent No. 2731292A1 (1978)), the aromatic ketone (10 mmol) is dissolved in methanol (MeOH) or ethanol (EtOH) (20 mL). Sodium borohydride (NaBH4) (5 mmol) is added in small portions. The reaction mixture is stirred for about 1-12 h at about room temperature. The reaction is monitored by TLC and/or LCMS to completion. The reaction is quenched by addition of 1 M hydrochloric acid (HCl). The majority of the volatiles are evaporated under reduced pressure (rotary evaporator; ambient bath temperature). The residue is diluted with 1 M hydrochloric acid and extracted with ethyl acetate (EtOAc). The aqueous phase is extracted with additional EtOAc (2×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Description 6
General Procedure for the Reduction of Benzoic Acids to Benzylic Alcohols
Adapting literature known protocols (Hay, et al., J. Chem. Soc., Perkin Trans. 1, 1999, 2759-2770; Fujikawa, et al., J. Am. Chem. Soc., 2008, 130, 14533-14543; International Publication No. WO 2010/122089; and International Application Publication No. WO2008/031594), commercial borane dimethylsulfide (BH3.DMS, BH3.SMe2) (2.0 M in THF) (50 mL, 100 mmol) or borane tetrahydrofurane complex (BH3.THF) (1.0 M in THF) (100 mL, 100 mmol) is added dropwise at room temperature to a stirred solution of the nitrobenzoic acid (50 mmol) in anhydrous THF (250 mL). Optionally, the reaction is performed in the presence of trimethyl borate (B(OMe)3) (200 mmol). The solution is heated at reflux for 4-6 h ( ̃75° C. oil bath temperature). The reaction is monitored by TLC and/or LCMS to completion. After cooling to about 5° C. (ice bath), the reaction is carefully quenched with a 1:1 (v/v) mixture of methanol (MeOH)/water (25 mL) followed by 5 N hydrochloric acid (HCl) (50 mL). The mixture is heated at about 50° C. for about 30-60 min and the majority of the volatile solvents are removed under reduced pressure. Water is added and the aqueous phase is extracted with ethyl acetate (3×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Description 7
General Procedure for the Oxidation of Benzylic Alcohols to Aromatic Aldehydes
Variant A:
Adapting literature known protocols (Parikh, et al., J. Am. Chem. Soc. 1967, 89, 5505-5507; and U.S. Pat. No. 8,168,617), to a solution of the alcohol (50 mmol), dimethylsulfoxide (DMSO) (28.5 mL, 400 mmol), triethylamine (Et3N, TEA) (34.8 mL, 250 mmol) in anhydrous dichloromethane (DCM) (300 mL) is added at 0° C. (ice bath) in small portions commercial sulfur trioxide-pyridine complex (Pyr.SO3) (23.9 g, 150 mmol). The reaction mixture is stirred with gradual warming to room temperature for about 4-12 hours. The reaction is monitored by TLC and/or LCMS to completion. The majority of volatile is evaporated under reduced pressure and the residue is diluted with 2 M hydrochloric acid till acidic. The aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Variant B:
Adapting literature known protocol (Aoyama, et al., Synlett, 1998, 35-36), commercial activated manganese(IV) oxide (MnO2) (250-275 mmol) is added at room temperature to a solution of the benzylic alcohol (25 mmol) in dichloromethane (DCM) (100 mL). The reaction mixture is stirred for 12-24 h. The reaction is monitored by TLC and/or LCMS to completion. The reaction mixture is filtered over a short path of Celite® 545 and the filtrate is concentrated under reduced pressure. The material is often of sufficient purity to be used directly in the next step without further isolation and purification procedures. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Variant C:
Adapting a literature known protocol (Corey and Suggs, Tetrahedron Lett., 1975, 16(31), 2647-2650; and Fujikawa, et al., J. Am. Chem. Soc., 2008, 130, 14533-14543), to a solution of the benzylic alcohol (20 mmol) in dichloromethane (DCM) (100 mL) is added commercial pyridinium chlorochromate (Pyr+CrO3Cl−, PCC) (28-40 mmol). The reaction mixture is heated to reflux (55° C. oil bath temperature) for 1-4 h. The reaction is monitored by TLC and/or LCMS till completion. The reaction is cooled to room temperature. Work-up and product isolation and purification are conducted as described for Variant B.
Description 8
General Procedure for the Addition of Methyltitanium Trichloride to Aromatic Aldehydes
Adapting a literature known protocol (Reetz, et al., Tetrahedron, 1986, 42(11), 2931-2935), titanium tetrachloride (TiCl4) (10 mmol) is added at −78° C. (dry ice/acetone bath) to cooled anhydrous diethyl ether (Et2O) (50 mL) under a nitrogen atmosphere resulting in partial precipitation of yellow TiCl4-bisdiethyl etherate (TiCl4.2OEt2). The reaction mixture is stirred for about 30 min. A solution of methyl lithium (MeLi) (1.6 M in Et2O) (6.25 mL, 10.0 mmol)) is added slowly which causes a color change to dark orange-brown (about 30 min). The reaction mixture is stirred for 30 min and then allowed to warm to about −30° C. A solution of the aldehyde (10 mmol) in a small amount of Et2O is added dropwise and stirred for 1-6 hours at about this temperature (−30° C. to −15° C.). The reaction is monitored by TLC and/or LCMS to completion. The reaction is quenched by addition of water. The aqueous phase is extracted with additional ethyl acetate (EtOAc) or Et2O (2×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure.
Description 9
General Procedure for the Bromination of Benzylic Alcohols
Adapting literature known protocols (Felder, et al., J. Med. Chem., 1970, 13(3), 559-561; and Shen and Jensen, DE Patent No. 2731292A1 (1978)), the benzylic alcohol (10 mmol) is dissolved in a solution of hydrogen bromide in acetic acid ( ̃1.0 M HBr in HOAc). The bromination solution is prepared from 33 wt-% HBr (5.71 M in HOAc) (2 mL, 11.4 mmol) and glacial acetic acid (HOAc) (9.5 mL) prior to use. The reaction mixture is heated to about 90-100° C. (oil bath temperature) for 1-12 hours under a nitrogen atmosphere. The reaction is monitored by TLC and/or LCMS to completion. The solvents are evaporated to dryness under reduced pressure (rotary evaporator; about 50° C. bath temperature). The residue is dissolved in a mixture of ethyl acetate (EtOAc) or diethyl ether (Et2O) and hexane. The organic phase is washed with 1 M hydrochloric acid and the aqueous phase is extracted with the same solvent mixture (1×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (3×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Description 10
General Procedure for the Preparation of Nitriles from Benzylic Bromides
Adapting literature known protocols (Felder, et al., J. Med. Chem., 1970, 13(3), 559-561; and Shen and Jensen, DE Patent No. 2731292A1 (1978)), the benzylic bromide (10 mmol) is dissolved in N,N-dimethylformamide (DMF), dimethylsulfoxide (DMSO) or ethanol (EtOH) (10-15 mL). Sodium or potassium cyanide (NaCN or KCN) (11-12 mmol) is added at once at room temperature. The reaction mixture is heated to about 75-100° C. (oil bath temperature) for 1 to 12 h under a nitrogen atmosphere. The reaction is monitored by TLC and/or LCMS to completion. EtOH is evaporated to dryness under reduced pressure (rotary evaporator; about 30° C. bath temperature) and the residue is portioned between ethyl acetate (EtOAc) and a saturated aqueous solution of sodium hydrogencarbonate (NaHCO3). If DMF or DMSO is used, the reaction mixture is directly diluted with EtOAc and a saturated aqueous NaHCO3 solution. The aqueous phase is extracted with EtOAc (2×). The combined organic extracts are washed with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Description 11
General Procedure for the Alkylation of Nitriles
Variant A:
Adapting literature known protocols (Kulig, et al., Pol. J. Chem., 2009, 83, 1629-1636; Mann, et al., J. Med. Chem. 1991, 34, 1307-1313; and Peddi, et al., Bioorg. Med. Chem Lett., 2004, 14, 2279-2283), a solution of the nitrile (10 mmol) in anhydrous tetrahydrofuran (THF) (freshly distilled over sodium benzophenone ketyl radical) (20-40 mL) is cooled to about −78° C. (dry ice/acetone bath) under a nitrogen atmosphere. At this temperature, a commercial solution of lithium diisopropylamide (LDA) (1.8 M in heptane/THF/ethylbenzene) (6.1-6.4 mL, 11-11.5 mmol) is added dropwise and the reaction mixture is stirred at this temperature for about 45-90 min. Depending on the nature of the nitrile substrate, an intense change of color, e.g., dark green-blue, may occur. Commercial alkyl 2-bromoacetate, e.g., BrCH2CO2Et, or BrCH2CO2tBu) (20 mmol) is added dropwise in neat form at −78° C. Optionally, the alkylating may be dried over 4 Å molecular sieves (4 Å MS) or may be distilled under a nitrogen atmosphere over calcium hydride (CaH2) prior to use. The reaction mixture is stirred for about 8-16 hours with gradual warming to room temperature. The reaction course is followed by TLC and/or LC/MS. The reaction is quenched by addition of 1.0 M hydrochloric acid (HCl). The aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents were evaporated to dryness under reduced pressure using a rotary evaporator. The crude material is purified by silica gel column chromatography or is re-crystallized.
Variant B:
Adapting literature known protocols (International Application Publication No. WO 2008/117175; and U.S. Pat. No. 5,015,644), to a cooled suspension (about 0° C., ice bath) of sodium hydride (NaH, 60 wt-% suspension in mineral oil) (11 mmol, 264 mg (440 mg of the 60 wt-% suspension) in anhydrous dimethylsulfoxide (DMSO) (10-20 mL) under a nitrogen atmosphere is dropwise added a solution of the nitrile (10 mmol) in anhydrous DMSO) (10-20 mL) and anhydrous diethyl ether (Et2O) (10-20 mL) (DMSO/Et2O=2:1 v/v!). The reaction mixture is stirred at this temperature for about 60-90 min. Depending on the nature of the nitrile substrate, an intense change of color, e.g., dark purple, may occur. Commercial alkyl 2-bromoacetate, e.g., BrCH2CO2Et, or BrCH2CO2tBu) (20 mmol) is added dropwise in neat form at 0° C. Optionally, the alkylating may be dried over 4 Å molecular sieves (4 Å MS) or may be distilled under a nitrogen atmosphere over calcium hydride (CaH2) prior to use. The reaction mixture is stirred for about 2-16 h with gradual warming to room temperature. The reaction course is followed by TLC and/or LC/MS. The reaction is quenched by addition of 1.0 M hydrochloric acid (HCl). Reaction quenching, work-up, product isolation and purification are conducted as described for Variant A.
Description 12
General Procedure for the Reduction of Nitro-Aromates to Anilines
Adapting a literature known protocol (Setamdideh, et al., Orient. J. Chem., 2011, 27(3), 991-996), the nitro-aromatic compound (10 mmol) and freshly powdered nickel(II) acetate tetrahydrate (Ni(OAc)2.4H2O) (2 mmol) are dissolved in a mixture of acetonitrile (MeCN) (50 mL) and water (5 mL) (MeCN/water=1:1 v/v). To aid dissolution of Ni(OAc)2 4H2O in the solvent system, the reaction mixture may be sonicated. Sodium borohydride (NaBH4) (40 mmol) is added in small portions (gas evolution and exotherm!). The reaction mixture is stirred for about 1-5 h at about room temperature. The reaction is monitored by TLC and/or LCMS to completion. The reaction mixture is diluted with water and extracted with ethyl acetate (2-3×). The combined organic extracts are washed with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. If needed, the crude material is purified by silica gel column chromatography or is re-crystallized.
Description 13
General Procedure for the Cbz-Protection of Anilines with Benzyl Chloroformate
Adapting literature known protocols (Maciejewski and P. Wipf, ARKIVOC, 2011, (vi), 92-119; and Yang, et al., Tetrahedron, 2013, 69(15), 3331-3337), the aniline (10 mmol) is dissolved in tetrahydrofuran (THF) (20-50 mL). Freshly powdered sodium hydrogencarbonate (NaHCO3) or potassium carbonate (K2CO3) (11-12 mmol) is added and the reaction mixture is cooled to about 0° C. (ice bath). Neat benzyl chloroformate (CbzCl, BnOCOCl) (11-12 mmol) is added. The reaction mixture is stirred with warming to room temperature for 1-12 h under a nitrogen atmosphere. The reaction is monitored by TLC and/or LCMS till completion. The reaction is quenched by addition of water. The majority of the volatiles (THF) are evaporated under reduced pressure (rotary evaporator; ambient bath temperature). The residue is diluted with little 1.0 M hydrochloric acid and the aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (1×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. The crude material is purified by silica gel column chromatography or is re-crystallized.
Description 14
General Procedure for the Reduction of Aliphatic Nitriles and in situ N-Boc Protection
Adapting literature known protocols (Caddick, et al., Tetrahedron, 2003, 59(29), 5417-5423), to a solution of the aliphatic nitrile (10 mmol), di-tert-butyl dicarbonate (Boc2O, Boc-anhydride) (20-30 mmol), and nickel(II) dichloride hexahydrate (NiCl2.6H2O) (5 mmol) in methanol (MeOH) (100 mL) at 0° C. (ice bath) is added sodium borohydride (NaBH4) (80-100 mmol) in small portions. Upon addition of NaBH4, a black precipitate (Ni2B) is generated immediately and hydrogen gas is generated (exotherm!). The reaction mixture is stirred with warming to room temperature for about 12 hours. The reaction is monitored by TLC and/or LCMS till completion. The reaction is quenched by addition of water and 1.0 hydrochloric acid. The aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are successively washed with a saturated aqueous sodium hydrogencarbonate (NaHCO3) solution (2×) and with brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. The crude material is purified by silica gel column chromatography or is re-crystallized. Optionally, the crude residue may be triturated for about 12 h with hexane to remove excess Boc2O, the solids are collected on a Büchner-funnel and the filtrate is evaporated to dryness under reduced pressure. The evaporated filtrate can be purified by silica gel column chromatography or can be re-crystallized to maximize the overall yield.
Description 15
General Procedure for the Selective N-Boc Protection of Primary Amines with Boc2O
Adapting a literature known protocol (U.S. Pat. No. 8,344,028), to a cooled solution of the aniline (10 mmol) in anhydrous dichloromethane (DCM) (20-30 mL) at about 0° C. (ice bath) is added triethylamine (Et3N, TEA) (12.0 mmol) followed by di-tert-butyl dicarbonate (Boc2O) (10.5 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) ( ̃0.5 mmol,  ̃5 mol-%). The reaction mixture is stirred with gradual warming to room temperature for 1-12 h. The reaction is monitored by TLC and/or LCMS to completion. The reaction mixture is diluted with DCM and the organic phase is washed with a saturated aqueous solution of ammonium chloride (NH4Cl) (1×) and brine (1×), dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents are evaporated to dryness under reduced pressure. The crude material is purified by silica gel column chromatography or is re-crystallized.
Description 16
General Procedure for the Removal of Cbz-Protecting Groups by Catalytic Hydrogenolysis
Adapting typical literature known protocols, the Cbz-protected aniline or amine derivative (10 mmol) is dissolved in methanol (MeOH), ethanol (EtOH), ethyl acetate (EtOAc), or mixtures of any of the foregoing (25-50 mL). The heterogeneous catalyst (5 or 10 wt-% palladium on charcoal containing  ̃50 wt-% water) (about 25-50 wt-% with respect to the Cbz-protected aniline or amine derivative) is added. Optionally, a small amount of acidic additives, e.g., few drops of HOAc or 1.0 M hydrochloric acid (HCl) are added to activate the catalyst. The atmosphere is exchanged to hydrogen (3×evacuation/refill technique) and the reaction mixture is stirred at room temperature under about 15 psi (H2-ballon) for 1-12 h. Optionally, the reaction is carried out in a stainless steel reactor or a Parr-hydrogenation apparatus if higher pressures of H2 are required. The reaction is monitored by TLC and/or LCMS till completion. The reaction mixture is filtered over a short plug of Celite® 545, the filtration aid is washed with MeOH, and the combined filtrates are evaporated under reduced pressure. The crude material is purified by silica gel column chromatography or is re-crystallized.
Description 17
General Procedure for the Reductive N-Alkylation
Adapting literature known protocols (Palani, et al., J. Med. Chem., 2005, 48(15), 4746-4749; van Oeveren, Bioorg. Med. Chem. Lett., 2007, 17(6), 1527-1531; Delfourne, et al., Bioorg. Med. Chem., 2004, 12(15), 3987-3994; Delfourne, et al., J. Med. Chem., 2002, 47(17), 3765-3771; and Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633), to a solution of the aniline (or a suspension of an aniline addition salt, e.g., a hydrochloride salt) (10 mmol) in methanol (MeOH) (30 mL) at about 5-15° C. (water bath with some ice) is added trifluoroacetic acid (TFA) (15 mL) (Variant A), acetic acid (15-20 mL) (HOAc) (Variant B), or 85 wt-% phosphoric acid (H3PO4) (Variant C). To the cooled solution, is added commercial 2-chloroacetaldehyde (ClCH2CHO) ( ̃50 wt-% in water,  ̃7.87 M) ( ̃6.5 mL, −50 mmol). The reaction mixture is stirred for about 15-30 min at this temperature when sodium cyanoborohydride (NaBH3CN) (2.51 g, 40 mmol) is added in small portions (exothermic hydrogen evolution!). The reaction mixture is stirred for 15-120 min with gradual warming to room temperature. In some case copious amounts of a precipitate are generated during the reaction. The reaction course is monitored by TLC and/or LC/MS till completion. The majority of the volatiles (Variants A and B) are evaporated under reduced pressure (rotary evaporator; ambient to 35° C. bath temperature). The residue is dissolved in ethyl acetate (EtOAc) and the organic phase is successively washed with a saturated aqueous solution of sodium hydrogencarbonate (NaHCO3) (2×) and brine (1×). The organic solution is dried over anhydrous magnesium sulfate (MgSO4), filtered, and the organic solvents were evaporated to dryness under reduced pressure. If non non-volatile acids are used (Variant C), the reaction mixture is diluted with water and neutralized (pH 5-7) with solid sodium hydrogencarbonate (NaHCO3). The aqueous phase is extracted with ethyl acetate (EtOAc) (3×) and the combined organic extracts are treated as described for Variants A and B. The crude material is purified by silica gel column chromatography or is re-crystallized.
Description 18
General Procedure for the N,N-Bis-(2-Hydroxyethylation) of Anilines with Ethylene Oxide
Adapting literature known protocols (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Abela Medici, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Feau, et al., Org. Biomolecular Chem., 2009, 7(24), 5259-5270; Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; Taylor, et al., Chem. Biol. Drug Des., 2007, 70(3), 216-226; Buss, et al., J. Fluorine Chem., 1986, 34(1), 83-114; Larden and Cheung, Tetrahedron Lett., 1996, 37(42), 7581-7582; Spreitzer and Puschmann, Monatshefte für Chemie, 2007, 138(5), 517-522; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; Weisz, et al., Bioorg. Med. Chem. Lett., 1995, 5(24), 2985-2988; Thorn, et al., J. Org. Chem, 1975, 40(11), 1556-1558; Baraldini, et al., J. Med., Chem., 2000, 53(14), 2675-2684; Zheng, et al., Bioorg., Med., Chem., 2010, 18(2), 880-886; Gourdi, et al., J., Med., Chem., 1990, 33(4), 1177-1186; Haines, et al., J. Med. Chem., 1987, 30, 542-547; Matharu, et al., Bioorg. Med. Chem. Lett., 2010, 20, 3688-3691; and Kupczyk-Subotkowska, et al., J. Drug Targeting, 1997, 4(6), 359-370), a mixture of the corresponding aniline (25.0 mmol) in aqueous acetic acid (HOAc) (25-75 vol-%) (25-100 mL) is cooled to about −20° C. (ice/sodium chloride bath) to about 0° C. (ice bath). Optionally, the solvent may also glacial acetic acid (HOAc), water, tetrahydrofuran (THF), ethanol (EtOH), 1,4-dioxane (for higher temperature reactions), or mixtures of any of the foregoing. An excess of ethylene oxide (oxirane) (100-400 mmol) is added to the reaction mixture either neat in pre-cooled form or dissolved in any of the foregoing solvents or mixtures thereof. The reaction mixture is stirred at about room temperature for about 12-48 hours. Alternatively, the reaction mixture may be heated in a sealed reaction vessel at 80-140° C. for a similar time. The reaction course is followed by TLC and/or LC/MS and is usually complete when the reaction mixture turns clear. The solvents are removed under reduced pressure using a rotary evaporator (40-60° C. water bath temperature). The residue is diluted with ethyl acetate (EtOAc), washed with brine, dried over anhydrous magnesium sulfate (MgSO4) or sodium sulfate (Na2SO4), filtered, and the solvents removed under reduced pressure using a rotary evaporator to yield the target compound, which may be used directly in the next step. The crude material may be further purified by silica gel column chromatography using EtOAc, methanol (MeOH), dichloromethane and hexanes, or mixtures of any of the foregoing to furnish the purified target compound. Alternatively, the crude target compound may be further purified by re-crystallization.
Description 19
General Procedures for Chlorination of N,N-Bis(2-Hydroxyethyl)-Groups
Variant A: Chlorination with Thionyl Chloride (SOCl2)
Adapting literature known protocols (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Abela Medici, et al., J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Taylor, et al., Chem. Biol. Drug Des., 2007, 70(3), 216-226; Dheyongera, Bioorg. Med. Chem. 2005, 13(3), 689-698; Zheng, Bioorg. Med. Chem. 2010, 18(2), 880-886; Gourdi, J. Med. Chem., 1990, 33(4), 1177-1186; and Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943), to a solution of thionyl chloride (SOCl2) (10-75 mmol) in an anhydrous organic solvent, e.g., dichloromethane (DCM), chloroform (CHCl3), 1,2-dichloroethane (DCE), benzene, or mixtures of any of the foregoing (25-100 mL) is added at a temperature from about 0° C. (ice bath) to about room temperature the corresponding N,N-bis(2-hydroxyethyl) derivative (5.0 mmol), either in neat form (portions) or as a solution in a small volume in any of the foregoing solvents. The reaction mixture is stirred at about room temperature to about 40° C. or heated to reflux for about 10 minutes to about 3 hours. Optionally, the reaction is carried out using neat SOCl2 directly as the solvent. Optionally, the reaction is carried out in the presence of a catalytic amount of zinc chloride (ZnCl2) (10 mol-% to 40 mol-%) or N,N-dimethylformamide (about 1 to 3 drops) to facilitate the reaction (Squires, et al., J. Org. Chem., 1975, 40(1), 134-136; and Abela Medici, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263). The reaction course is followed by TLC and/or LC/MS till completion. Volatiles (solvents and excess of SOCl2) are removed under reduced pressure using a rotary evaporator. Optionally, a small amount of co-solvent, e.g., of benzene, is added to assist in azeotropic co-evaporation and removal of residual excess chlorination agent. The residue is diluted with 1.0 M hydrochloric acid (HCl). The aqueous phase is extracted with ethyl acetate (EtOAc) (3×), and the combined organic extracts are washed with a saturated aqueous solution of sodium hydrogen carbonate (NaHCO3) (2×) and brine (1×). The organic layer is dried over anhydrous magnesium sulfate (MgSO4) or sodium sulfate (Na2SO4), filtered, and the solvents removed under reduced pressure using a rotary evaporator. The residue is purified by silica gel column chromatography using EtOAc and hexanes mixtures.
Variant B: Chlorination with Phosphoryl Chloride (POCl3)
Adapting literature known protocols (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Feau, et al., Org. Biomolecular Chem., 2009, 7(24), 5259-5270; Valu, et al., J. Med. Chem., 1990, 33(11), 3014-3019; Baraldini, et al., J. Med., Chem., 2000, 53(14), 2675-2684; Gourdi, et al., J., Med., Chem., 1990, 33(4), 1177-1186; Haines, et al., J. Med. Chem., 1987, 30, 542-547; and Matharu, et al., Bioorg. Med. Chem. Lett., 2010, 20, 3688-3691), to a solution of phosphorus(V) oxychloride (phosphoryl chloride, POCl3) (10-50 mmol) in an anhydrous organic solvent, e.g., benzene, acetonitrile, pyridine, or mixtures of any of the foregoing (25-100 mL) is added at a temperature from about 0° C. (ice bath) to about room temperature the corresponding N,N-bis(2-hydroxyethyl) derivative (5.0 mmol) either in neat form (portions) or as a solution in a small volume in any of the foregoing solvents. The remainder of the reaction, work-up, and product isolation are essentially conducted as described in Variant A.
Variant C: Chlorination with Methanesulfonyl Chloride/Pyridine
Adapting literature known protocols (Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Abela Medici, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; and Larden and Cheung, Tetrahedron Lett., 1996, 37(42), 7581-7582), a solution of methanesulfonyl chloride (MsCl) (20.0 mmol) in anhydrous pyridine (about 10 mL) is drop-wise added with stirring and at a temperature of about 0° C. (ice bath) to a solution of the corresponding N,N-bis(2-hydroxyethyl) derivative (5 mmol) in anhydrous pyridine (about 10 mL). After about 30 minutes, the reaction mixture is heated at 50-100° C. for about 1-3 h. After cooling to room temperature, potential precipitates, if any, e.g., pyridinium methansulfonate, are filtered off before the solvents are partially removed under reduced pressure using a rotary evaporator. The remainder of the reaction, work-up, and product isolation are essentially conducted as described in Variant A.
Variant D: Chlorination with Triphenylphosphine/Tetrachlorocarbon (PPh3/CCl4)
Adapting literature known protocols (Buss, et al., J. Fluorine Chem., 1986, 34(1), 83-114; and Kupczyk-Subotkowska, et al., J. Drug Targeting, 1997, 4(6), 359-370), a solution of the corresponding N,N-bis(2-hydroxyethyl) derivative (5 mmol) in anhydrous dichloromethane (DCM) (about 25 mL) containing carbon tetrachloride (CCl4) (15-25 mmol) is cooled to about 0° C. (ice bath). Alternatively, neat carbon tetrachloride (CCl4) (25 mL) is used as a reaction solvent. The reaction mixture is stirred, and triphenylphosphine (Ph3P) (10-15 mmol) is added in portions. The reaction mixture is stirred for about 8-14 h with gradual warming to room temperature. Alternatively, the reaction mixture is heated at reflux for about 2-6 h. The reaction course is followed by TLC and/or LC/MS till completion. The reaction mixture is cooled to room temperature and the solvents are removed under reduced pressure using a rotary evaporator. The residue is triturated with diethyl ether (Et2O) (3×) to remove some of the triphenylphosphine oxide (Ph3PO). The organic phase is evaporated under reduced pressure using a rotary evaporator. The remainder of the reaction, work-up, and product isolation are conducted as described in Variant A.
Description 20
General Procedure for the Mesylation of N,N-Bis(2-Hydroxyethyl)-Groups
Variant A:
Adapting literature protocols (Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; and Yang, et al., Tetrahedron, 2007, 63(25), 5470-5476), to a cooled solution (about 0° C. (ice bath)) of the corresponding N,N-bis(2-hydroxyethyl) derivative (5.0 mmol) in anhydrous dichloromethane (DCM) (25-50 mL) are added triethylamine (Et3N, TEA) (3.48 mL, 2.54 g, 25.0 mmol) or anhydrous pyridine (1.94 mL, 1.98 g, 25.0 mmol), and a catalytic amount of 4-N,N-(dimethylamino)pyridine (DMAP) (122 mg, 1.0 mmol, 20 mol-%). Methanesulfonyl anhydride (Ms2O) (3.48 g, 20.0 mmol) is added portion-wise or as a solution in DCM (5-10 mL). The reaction mixture is stirred with gradual warming to room temperature for about 8-24 h. The reaction is followed by TLC and/or LC/MS. Solvents are removed under reduced pressure using a rotary evaporator. The residue is diluted with 1.0 M hydrochloric acid (HCl), and the aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are washed with a saturated aqueous solution of sodium hydrogen carbonate (NaHCO3), and brine, dried over anhydrous magnesium sulfate (MgSO4) or sodium sulfate (Na2SO4), filtered, and the solvents are removed under reduced pressure using a rotary evaporator to yield the target compound, which may be used directly in the next step. Alternatively, the crude residue may be further purified by silica gel column chromatography using EtOAc, methanol (MeOH), dichloromethane (DCM), and hexanes, or mixtures of any of the foregoing to furnish the purified target compound. Alternatively, the crude target compound may be further purified by re-crystallization.
Variant B:
Adapting literature known protocols (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Palmer, et al., J. Med. Chem., 1994, 37, 2175-2184; Palmer, et al., J. Med.
Chem, 1996, 39(13), 2518-2528; Spreitzer and Puschmann, Monatshefte für Chemie, 2007, 138(5), 517-522; Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943; Gourdi, et al., J. Med. Chem., 1990, 33(4), 1177-1186; Ferlin, et al., Bioorg. Med. Chem., 2004, 12(4), 771-777; Thorn, et al., J. Org. Chem, 1975, 40(11), 1556-1558; and Coggiola, et al., Bioorg. Med. Chem. Lett., 2005, 15(15), 3551-3554), to a cooled solution (about 0° C. (ice bath)) of the corresponding N,N-bis(2-hydroxyethyl) derivative (5.0 mmol) in anhydrous dichloromethane (DCM), tetrahydrofuran (THF), ethyl acetate (EtOAc), or a mixture thereof (20-40 mL) are added triethylamine (Et3N, TEA) (2.1 mL, 1.52 g, 15.0 mmol) or anhydrous pyridine (4.04 mL, 3.96 g, 25.0 mmol). Methanesulfonyl chloride (MsCl) (0.96 mL, 1.44 g, 12.5 mmol) is added drop-wise to the reaction mixture. The reaction mixture is stirred for about 1-2 hours at this temperature. The reaction may be followed by TLC and/or LC/MS. Aqueous work-up and purification by silica gel chromatography are performed as described for Variant A.
Description 21
General Procedure for the Finkelstein Conversion to N,N-Bis(2-Halogenoethyl)-Groups
Adapting literature known protocols (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Palmer, et al., J. Med. Chem., 1994, 37, 2175-2184; Palmer, et al., J. Med. Chem., 1996, 39(13), 2518-2528; Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; Weisz, et al., Bioorg. Med. Chem. Lett., 1995, 5(24), 2985-2988; Thorn, J. Org. Chem, 1975, 40(11), 1556-1558; Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943; Gourdi, et al., J. Med. Chem. 1990, 33(4), 1177-1186; Yang, et al., Tetrahedron, 2007, 63(25), 5470-5476; Ferlin, et al., Bioorg. Med. Chem., 2004, 12(4), 771-777; and Coggiola, et al., Bioorg. Med. Chem. Lett., 2005, 15(15), 3551-3554), a slurry of the corresponding N,N-bis(2-methylsulfonyloxyethyl) derivative (5.0 mmol) and an alkali metal halide, e.g., lithium chloride (LiCl), lithium bromide (LiBr), sodium chloride (NaCl), sodium bromide (NaBr), or sodium iodide (NaI) (20-80 mmol) in an anhydrous organic solvent, e.g., N,N-dimethylformamide (DMF), N,N-dimethylacetamide (DMAc), acetone, 2-butanone (methyl ethyl ketone, MEK), 3-methyl-2-butanone (isopropyl methyl ketone, MIPK), acetonitrile (MeCN), methanol (MeOH), tetrahydrofuran (THF), ethyl acetate (EtOAc) or a mixture of any of the foregoing (10-30 mL), is stirred at room temperature or heated at 50-150° C. for about 1-12 hours. The reaction is followed by TLC and/or LC/MS to completion. Solvents are partially or completely removed under reduced pressure using a rotary evaporator. The residue is diluted with 1.0 M hydrochloric acid (HCl), and the aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are washed with a saturated aqueous solution of sodium hydrogen carbonate (NaHCO3), and brine, dried over anhydrous magnesium sulfate (MgSO4) or sodium sulfate (Na2SO4), filtered, and the solvents are removed under reduced pressure using a rotary evaporator to yield the target compound, which may be used directly in the next step. Alternatively, the crude residue may be further purified by silica gel column chromatography using EtOAc, methanol (MeOH), dichloromethane (DCM), and hexanes, or mixtures of any of the foregoing to furnish the purified target compound. Alternatively, the crude target compound may be further purified by re-crystallization.
Description 22
General Procedure for Deprotection by Acid Hydrolysis with Strong Aqueous Acids
Adapting literature known protocols (Taylor, et al., Chem. Biol. Drug Des., 2007, 70(3), 216-226; Buss, et al., J. Fluorine Chem., 1986, 34(1), 83-114; Abela, et al, J. Chem. Soc., Perkin Trans. 1, 1997, (20), 2258-2263; Weisz, et al., Bioorg. Med. Chem. Lett., 1995, 5(24), 2985-2988; Zheng, Bioorg., Med., Chem., 2010, 18(2), 880-886; Haines, et al., J. Med. Chem., 1987, 30, 542-547; and Matharu, et al., Bioorg., Med., Chem., Lett., 2010, 20, 3688-3691), hydrolytic removal of protecting groups is conducted through heating a suspension or solution of the corresponding protected N-mustard (1 mmol) in 2-12 M of an aqueous hydrohalogenic acid (5-10 mL/mmol) or a 20-80 vol-% mixture of a 2-12 M of an aqueous hydrohalogenic acid with 1,4-dioxane (5-10 mL/mmol) at an elevated temperature from about 30° C. to about 150° C. (sealed tube) for 1-24 h. The reaction is be followed by TLC and/or LC/MS to completion. Organic side products, e.g., phthalic acid or benzoic acid, may be extracted with an organic solvent, e.g., ethyl acetate (EtOAc) or chloroform (CHCl3). The aqueous solution or organic volatile solvents are evaporated using a rotary evaporator (40° C. to 60° C. water bath temperature) to yield the crude target product which may be dissolved in a  ̃50 vol-% aqueous acetonitrile (MeCN) followed by lyophilization. Where applicable, the crude target compound is further purified by RP-HPLC purification using acetonitrile/water mixtures containing 0.05-0.1 vol-% formic acid (FA) or TFA followed by primary lyophilization, optionally in the presence of 1.0 or an excess of an acid capable of forming pharmaceutically acceptable salt addition products. Where applicable, the crude material is purified by re-crystallization, titruation, or repeated precipitation.
Description 23
Global Deprotection of Under Anhydrous Conditions with Strong Acids
Variant A:
Adapting literature known protocols (Springer, et al., J. Med. Chem., 1990, 33(2), 677-681; Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Niculesscu-Duvaz, et al., J. Med. Chem., 2004, 47(10), 2651-2658; Verny and Nicolas, J. Label. Cmpds, Radiopharm., 1988, 25(9), 949-955; Thorn, et al., J. Org. Chem, 1975, 40(11), 1556-1558; Baraldini, et al., J. Med. Chem., 2000, 53(14), 2675-2684; Gourdi, et al., J. Med. Chem., 1990, 33(4), 1177-1186; and Kupczyk-Subotkowska, et al., J. Drug Targeting, 1997, 4(6), 359-370), a solution of the corresponding protected N,N-bis(2-chloroethyl)aryl-substituted β-substituted γ-amino acid precursor (1.0 mmol) in neat trifluoroacetic acid (TFA), a mixture of TFA and dichloromethane (DCM) or 1,2-dichloroethane (DCE) (90 vol.-% TFA to 90 vol.-% organic solvent), or 98% formic acid (HCO2H) (10-25 mL/mmol) is stirred at about room temperature for about 1-24 h. Optionally, scavengers (2-5 mmol) such as triethysilane (Et3SiH), triisopropylsilane (iPr3SiH), thioanisole (PhSMe), or 1,2-dithioethane (HSCH2CH2HS) are added to the reaction mixture to suppress unwanted side reactions (Metha, Tetrahedron Lett., 1992, 33(37), 5411-5444). The reaction is be followed by TLC and/or analytical LC/MS to completion. The solvent is removed under reduced pressure using a rotary evaporator (water bath temperature at about 30° C.). Optionally, residual acid traces are azeotropically removed through repeated co-evaporation (5-10×) under reduced pressure using a suitable co-solvent, e.g., ethyl acetate (EtOAc), toluene, or DCM to yield the crude target compound, which may be used directly in in vitro or in vivo experiments. Further purification is conducted as described for Description 22.
Variant B:
Adapting literature known protocols, a solution of the corresponding protected N,N-bis(2-chloroethyl)aryl-substituted β-substituted γ-amino acid precursor (1.0 mmol) in 2 M hydrogen chloride in diethyl ether (2.0 M HCl in Et2O) or 4 M hydrogen chloride in 1,4-dioxane (4.0 M HCl in 1,4-dioxane) is stirred at about room temperature for about 1-36 h. Optionally scavengers are the same as in Variant A. The reaction is be followed by TLC and/or analytical LC/MS to completion. The reaction mixture is centrifuged for about 10 min at 3000 rpm, the supernatant decanted or pipetted off, and the precipitate is suspended in anhydrous Et2O repeating the centrifugation/washing sequence (2-3×). The crude target compound may be used directly in in vitro or in vivo experiments. Further purification is conducted as described for Description 22.
Example 1
4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]butanoic Acid (1)




Step A: 4-[3-(Bis(2-chloroethyl)amino)phenyl]pyrrolidin-2-one (1a)
Following the General Procedure of Description 17 (Variant A) 4-[3-(bis(2-chloroethyl)amino)phenyl]pyrrolidin-2-one (1b) was prepared from commercial 4-(3-aminophenyl)pyrrolidin-2-one hydrochloride (1.07 g, 5.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (3.18 mL, 25.0 mmol), and sodium cyanoborohydride (NaBH3CN) (1.26 g, 20.0 mmol) in a mixture of methanol (MeOH) (15 mL) and trifluoroacetic acid (TFA) (7.5 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc) afforded 1.33 g (88% yield) of the title compound (1a) as a colorless, viscous oil. Rf:  ̃0.32 (EtOAc). Rf:  ̃0.41 (dichloromethane (DCM)/methanol (MeOH)=95:5 v/v). 1H NMR (300 MHz, CDCl3): δ 7.22 (d, J=8.1 Hz, 1H), 6.67 (d, J=7.5 Hz, 1H), 6.59 (dd, J=8.4, 2.4 Hz, 1H), 6.55-6.52 (br. m, 1H), 6.10-6.00 (br. m, 1H), 3.82-3.58 (m, 10H), 3.42 (dd, J=9.0, 7.2 Hz, 1H), 2.73 (dd, J=17.1, 9.0 Hz, 1H), 2.50 (dd, J=17.1, 9.0 Hz, 1H) ppm. MS (ESI+): m/z=301.05 (M+H+)+.
Step B: 4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]butanoic acid (1)
Following the General Procedure of Description 22, 4-amino-3-[3-[bis(2-chloroethyl)amino]phenyl]butanoic acid (1) was prepared from lactam (1a) (4-[3-(bis(2-chloroethyl)amino)phenyl]pyrrolidin-2-one) (878 mg, 2.92 mmol) by hydrolysis in concentrated hydrochloric acid (HCl(aq.)) (about 12 mL) at reflux temperature for about 20 hours to afford 1.05 g (91% yield with respect to the dihydrochloride salt) of the target compound (1) (4-amino-3-[3-[bis(2-chloroethyl)amino]phenyl]butanoic acid) as a dihydrochloride salt after isolation using evaporation and lyophilization. Three-hundred-ten (310) mg of the material obtained was further purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 224 mg (72% recovery) of the title compound (1) as a dihydrochloride salt with a brownish tint after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and/or in vivo evaluation. LC/UV (from LC/MS): Rt=0.84 min. 98.1% purity by AUC at λ=254 nm. LC/UV: Rt=9.43 min. 95.3% purity by AUC at λ=254 nm. 1H NMR (300 MHz, D2O): δ 7.51-7.43 (br. m, 1H), 7.35-7.28 (br. m, 3H), 3.90 (t, J=6.0 Hz, 4H), 3.48 (t, J=6.0 Hz, 4H), 3.44-3.30 (m, 1H), 3.26 (dd, J=12.9, 5.7 Hz, 1H), 3.14 (dd, J=12.9, 10.2 Hz, 1H), 2.78 (dd, J=15.9, 5.4 Hz, 1H), 2.64 (dd, J=16.2, 9.6 Hz, 1H) ppm. MS (ESI+): m/z=319.10 (M+H+)+, (ESI−): m/z=317.00 (M−H+)−, 635.20 (2M−H+)−. Various batches of mono- or dihydrochloride salts of (1) can be prepared by primary lyophilization of solutions of (1) in aqueous acetonitrile (MeCN) containing either 1.0 eq. of 1.0 N hydrochloric acid (HCl) or an excess of 1.0 N or higher concentrated hydrochloric acid (HCl).
Example 2
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (2)




Step A: Methyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (2a)
Following the General Procedure of Description 2 (Variant A), methyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (2a) was prepared from commercial 2-methyl-5-nitro-benzaldehyde (3.30 g, 20.0 mmol) (Beech, J. Chem. Soc. (C), 1967, 2374-2375), trimethyl phosphonoacetate (4.04 mL, 4.55 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (20 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane (1:5 v/v) afforded 3.59 g (81% yield) of the title compound (2a) as an off-white to pale yellow solid. Rf:  ̃0.30 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.39 (d, J=2.4 Hz, 1H), 8.11 (dd, J=8.4, 2.4 Hz, 1H), 7.92 (d, J=15.9 Hz, 1H), 7.38 (d, J=8.4 Hz, 1H), 6.50 (d, J=15.9 Hz, 1H), 3.84 (s, 3H), 2.53 (s, 3H) ppm.
Step B: Methyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (2b)
Following the General Procedure Description 3, methyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (2b) was prepared from methyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (2a) (3.38 g, 15.3 mmol) in a mixture of nitromethane (MeNO2) (8.2 mL, 9.34 g, 153 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.29 mL, 2.33 g, 15.3 mmol). Purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane (1:4 v/v→1:3 v/v) afforded 3.90 g (90% yield) of the title compound (2b) as a pale-yellow oil. Rf:  ̃0.55 (EtOAc/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.06-8.01 (m, 2H), 7.38 (dd, J=9.0, 0.6 Hz, 1H), 4.77 (dd, J=13.2, 6.6 Hz, 1H), 4.65 (dd, J=12.9, 8.1 Hz, 1H), 4.43-4.32 (m, 1H), 3.64 (s, 3H), 2.83-2.81 (br. m, 1H), 2.79 (br. d, J=1.2 Hz, 1H), 2.57 (s, 3H) ppm.
Step C: 4-(5-Amino-2-methyl-phenyl)pyrrolidin-2-one (2c)
Following the General Procedure of Description 4, 4-(5-amino-2-methyl-phenyl)pyrrolidin-2-one (2c) was prepared from methyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (2b) (2.85 g, 10.1 mmol), freshly washed active Raney®-3202 nickel (about 10 mL of slurry) in ethanol (EtOH) (85 mL) using a Parr hydrogenation apparatus under about 50 psi hydrogen pressure. The partially lactamized crude material (1H NMR analysis (300 MHz, CDCl3) showed a ratio of non-cyclized form to lactam of about 5:3) was dissolved/suspended in a sealed tube in toluene (about 50 mL) and heated to about 95° C. (oil bath temperature) overnight to complete the lactam formation of non-cyclized material. Purification by silica gel column chromatography with a mixture of dichloromethane (DCM) and methanol (MeOH) (96:4 v/v) afforded 1.12 g (58% yield) of the title compound (2c) as an off-white solid. Rf:  ̃0.25 (DCM/MeOH=95:5 v/v). M.p.=146.7° C.-168.7° C. (browning, decomposition). 1H NMR (300 MHz, CDCl3): δ 6.95 (d, J=8.4 Hz, 1H), 6.61 (d, J=2.4 Hz, 1H), 6.51 (dd, J=8.1, 2.7 Hz, 1H), 6.12-6.00 (br. m, 1H), 3.89-3.71 (superimposed, br. m, 2H), 3.60 (br. s, 2H), 3.35 (dd, J=9.0, 5.7 Hz, 1H), 2.70 (dd, J=17.8, 9.0 Hz, 1H), 2.43 (dd, J=16.8, 6.9 Hz, 1H), 2.22 (s, 3H) ppm. MS (ESI+): m/z=191.10 (M+H+)+, 381.20 (2M+H+)+.
Step D: 4-[5-(Bis(2-chloroethyl)amino)-2-methyl-phenyl]pyrrolidin-2-one (2d)
Following the General Procedure of Description 17 (Variant A) 4-[5-(bis(2-chloroethyl)amino)-2-methyl-phenyl]pyrrolidin-2-one (2d) was prepared from 4-(5-amino-2-methyl-phenyl)pyrrolidin-2-one (2c) (1.11 g, 5.84 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (3.71 mL, 29.2 mmol), and sodium cyanoborohydride (NaBH3CN) (1.47 g, 23.3 mmol) in a mixture of methanol (MeOH) (20 mL) and trifluoroacetic acid (TFA) (10 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc) afforded 1.72 g (94% yield) of the title compound (2d) as a colorless, viscous oil that solidified to a colorless solid. Rf:  ̃0.48 (EtOAc). Rf:  ̃0.43 (dichloromethane (DCM)/methanol (MeOH)=95:5 v/v). 1H NMR (300 MHz, CDCl3): δ 7.06 (d, J=8.7 Hz, 1H), 6.60 (d, J=2.7 Hz, 1H), 6.53 (dd, J=8.4, 2.7 Hz, 1H), 6.22-6.14 (br. m, 1H), 3.93-3.80 (m, 1H), 3.79-3.67 (m, 5H), 3.66-3.58 (m, 4H), 3.40 (dd, J=9.3, 6.3 Hz, 1H), 3.72 (dd, J=17.1, 9.0 Hz, 1H), 2.45 (dd, J=17.1, 7.8 Hz, 1H), 2.25 (s, 3H) ppm. MS (ESI+): m/z=315.10 (M+H+)+.
Step E: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (2)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (2) was prepared from lactam (2d) (4-[5-(bis(2-chloroethyl)amino)-2-methyl-phenyl]pyrrolidin-2-one) (1.01 g, 3.20 mmol) by hydrolysis in concentrated hydrochloric acid (HCl) (about 15 mL) at reflux temperature for about 14 hours to afford 1.36 g ( ̃quantitative yield with respect to the dihydrochloride salt) of the title compound (2) as a dihydrochloride salt after isolation using evaporation and lyophilization. Three-hundred-sixty (360) mg of the material thus obtained was purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 316 mg (88% recovery) of the title compound (2) as an almost colorless dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). LC/UV: Rt=10.13 min. H NMR (300 MHz, D2O): δ 7.37-7.31 (br. m, 2H), 7.26 (dd, J=8.4, 2.7 Hz, 1H), 3.90 (t, J=6.0 Hz, 4H), 3.74-3.61 (m, 1H), 3.44 (t, J=5.7 Hz, 4H), 3.20 (dd, J=12.9, 6.3 Hz, 1H), 3.10 (dd, J=12.9, 8.4 Hz, 1H), 2.81 (dd, J=16.5, 5.1 Hz, 1H), 2.68 (dd, J=16.2, 9.9 Hz, 1H), 2.28 (s, 3H) ppm. MS (ESI+): m/z=333.10 (M+H+)+, (ESI−): m/z=331.00 (M−H+)−. Various batches of mono- or dihydrochloride salts of (2) can be prepared by primary lyophilization of solutions of (2) in aqueous acetonitrile (MeCN) containing either 1.0 eq. of 1.0 N hydrochloric acid (HCl) or an excess of 1.0 N or higher concentrated hydrochloric acid (HCl).
Example 3
4-Amino-3-[3-[bis(2-chloroethyl)amino]-2,6-dimethyl-phenyl]butanoic acid (3)




Step A: 2,6-Dimethyl-3-nitro-benzaldehyde (3a)
Following the General Procedure of Description 1 (Variant A), 2,6-dimethyl-3-nitro-benzaldehyde (3a) was prepared using commercial 2,6-dimethylbenzaldehyde (11.5 g, 85.7 mmol) in a mixture of glacial acetic acid (HOAc) (50 mL) and white fuming nitric acid (min. 90 wt-% HNO3) (100 mL). Aqueous work-up yielded 13.2 g (86% yield) of the target compound (3a) as a pale yellow solid. The material obtained was of sufficient purity to be used directly in the next step without further isolation and purification. Rf:  ̃0.44 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 10.60 (s, 1H), 7.81 (d, J=8.1 Hz, 1H), 7.23 (d, J=8.1 Hz, 1H), 2.65 (s, 3H), 2.62 (s, 3H) ppm.
Step B: Methyl (E)-3-(2,6-dimethyl-3-nitro-phenyl)prop-2-enoate (3b)
Following the General Procedure of Description 2 (Variant A), methyl (E)-3-(2,6-dimethyl-3-nitro-phenyl)prop-2-enoate (3b) was prepared from 2,6-dimethyl-3-nitro-benzaldehyde (3a) (13.0 g, 72.6 mmol), trimethyl phosphonoacetate (17.6 mL, 19.8 g, 108.8 mmol), and anhydrous lithium bromide (LiBr) (12.6 g, 145.1 mmol) in a mixture of triethylamine (Et3N, TEA) (17.7 mL, 12.9 g, 127.0 mmol) and acetonitrile (MeCN) (70 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane (1:6 v/v) afforded 14.0 g (82% yield) of an yellow and opaque oil consisting of a mixture of about 88.1 wt-% (85 mol-% by 1H NMR) of the target compound (3b) and about 11.9 wt-% (1.9 g, 15 mol-% by 1H NMR) of starting material (3a). The mixture was used in the next step without further isolation and purification. Rf:  ̃0.52 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.74 (d, J=16.8 Hz, 1H), 7.69 (d, J=8.4 Hz, 1H), 7.18 (d, J=8.7 Hz, 1H), 6.04 (d, J=16.5 Hz, 1H), 3.84 (s, 3H), 2.43 (s, 3H), 2.35 (s, 3H) ppm.
Step C: Methyl 3-(2,6-dimethyl-3-nitro-phenyl)-4-nitro-butanoate (3c)
Following the General Procedure of Description 3, methyl 3-(2,6-dimethyl-3-nitro-phenyl)-4-nitro-butanoate (3c) was prepared from methyl (E)-3-(2,6-dimethyl-3-nitro-phenyl)prop-2-enoate (3b) (14.0 g. g, 59.5 mmol) in neat nitromethane (MeNO2) (100 mL, 113.7 g, 1.86 mol) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (10.0 mL, 10.2 g, 66.9 mmol). Purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane (1:4 v/v→1:3 v/v) afforded 14.98 g (85% yield) of the title compound (3c) as a yellow oil. The material solidified upon prolonged standing at room temperature to an orange-yellow crystalline material. Rf:  ̃0.24 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.57 (d, J=8.1 Hz, 1H, major diastereomer), 7.49 (d, J=8.4 Hz, 1H, minor diastereomer), 7.19 (d, J=8.1 Hz, 1H, major diastereomer), 7.11 (d, J=8.1 Hz, 1H, minor diastereomer), 4.95-4.69 (m, 3H, both diastereomers), 3.66 (s, 3H, both diastereomers), 2.98-2.78 (m, 2H, both diastereomers), 2.57 (s, 3H, major diastereomer), 2.53 (s, 3H, minor diastereomer), 2.48 (s, 3H, minor diastereomer), 2.45 (s, 3H, major diastereomer) ppm. D.r. (by 1H NMR, 300 MHz, CDCl3):  ̃2.0.
Step D: 4-(3-Amino-2,6-dimethyl-phenyl)pyrrolidin-2-one (3d)
Following the General Procedure of Description 4, 4-(3-amino-2,6-dimethyl-phenyl)pyrrolidin-2-one (3d) was prepared from methyl 3-(2,6-dimethyl-3-nitro-phenyl)-4-nitro-butanoate (3c) (2.75 g, 9.28 mmol), freshly washed active Raney®-3202 nickel (about 9 mL of slurry) in ethanol (EtOH) (80 mL) using a Parr hydrogenation apparatus under about 50 psi hydrogen pressure. 1H NMR analysis (300 MHz, CDCl3) and TLC analysis showed the presence of both the non-cyclized form and lactam (Rf (non-cyclized form):  ̃0.14 (dichloromethane (DCM)/methanol (MeOH)=9:1 v/v). The partially lactamized crude material was dissolved/suspended in a sealed tube in toluene (about 100 mL) and heated to about 95° C. (oil bath temperature) for about 3 h to complete the lactam formation of non-cyclized material (TLC reaction control). After hot filtration, the yellow organic solution was evaporated under reduced pressure using a rotary evaporator to afford an almost colorless solid material. The residue was dissolved in DCM and the solvent was slowly evaporated at room temperature to afford 1.55 g (81% yield) of the target compound (3d) as an yellow-brownish crystalline material of sufficient purity to be used directly in the next step without further isolation and purification. Rf:  ̃0.28 (ethyl acetate (EtOAc)). Rf:  ̃0.51 (dichloromethane (DCM)/methanol (MeOH)=9:1 v/v). 1H NMR (300 MHz, CDCl3): δ 6.87 (d, J=7.8 Hz, 1H), 6.56 (d, J=7.8 Hz, 1H), 6.20-6.08 (br. m, 1H), 4.25 (ddd, J=17.7, 10.2, 7.8 Hz, 1H), 3.73 (t, J=9.9 Hz, 1H), 3.58, 3.48 (m, 3H), 2.69 (dd, J=18.0, 10.8 Hz, 1H), 2.62 (dd, J=18.0, 9.6 Hz, 1H), 2.29 (s, 3H), 2.13 (s, 3H) ppm. MS (ESI+): m/z=205.15 (M+H+)+, 409.30 (2M+H+)+.
Step E: 4-[3-(Bis(2-chloroethyl)amino)-2,6-dimethyl-phenyl]pyrrolidin-2-one (3e)
Following the General Procedure for of Description 17 (Variant A) 4-[3-(bis(2-chloroethyl)amino)-2,6-dimethyl-phenyl]pyrrolidin-2-one (3e) was prepared from 4-(3-amino-2,6-dimethyl-phenyl)pyrrolidin-2-one (3d) (1.55 g, 7.57 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (4.81 mL, 37.9 mmol), and sodium cyanoborohydride (NaBH3CN) (1.97 g, 30.3 mmol) in a mixture of methanol (MeOH) (25 mL) and trifluoroacetic acid (TFA) (12.5 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc) afforded 1.62 g (65% yield) of the title compound (3e) as a colorless viscous oil that solidified to a colorless solid. Rf:  ̃0.27 (EtOAc). Rf:  ̃0.61 (dichloromethane (DCM)/methanol (MeOH)=9:1 v/v). 1H NMR (300 MHz, CDCl3): δ 7.01 (s, 2H), 6.33-6.28 (br. m, 1H), 4.29 (ddd, J=17.4, 10.2, 7.8 Hz, 1H), 3.74 (br. t, J=9.9 Hz, 1H), 3.55 (br. dd, J=9.6, 7.8 Hz, 1H), 3.48-3.42 (m, 4H), 3.39-3.32 (m, 4H), 2.76-2.57 (m, 2H), 2.37 (s, 3H), 2.34 (s, 3H) ppm. MS (ESI+): m/z=329.15 (M+H+)+.
Step F: 4-Amino-3-[3-[bis(2-chloroethyl)amino]-2,6-dimethyl-phenyl]butanoic acid (3)
Following the General Procedure of Description 22, 4-amino-3-[3-[bis(2-chloroethyl)amino]-2,6-dimethyl-phenyl]butanoic acid (3) was prepared from 4-[3-(bis(2-chloroethyl)amino)-2,6-dimethyl-phenyl]pyrrolidin-2-one (3e) (765 mg, 2.32 mmol) by hydrolysis in concentrated hydrochloric acid (HCl) (about 10 mL) at reflux temperature for about 32 hours to afford 856 mg (88% yield with respect to the dihydrochloride salt) of the title compound (3) as a dihydrochloride salt after isolation using evaporation and lyophilization. Four-hundred-fifty-nine (459) mg of the material thus obtained was purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 173 mg (38% recovery) of the title compound (3) as an off-white dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). LC/UV: Rt=8.00 min. 95.7% purity by AUC at X=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.46-7.36 (br. m, 1H, both diastereomers), 7.33-7.20 (br. m, 1H, both diastereomers), 4.17-4.00 (br. m, 1H, both diastereomers), 3.90-3.75 (br. m, 4H, both diastereomers), 3.12-2.97 (br. m, 5H, both diastereomers), 2.90-2.75 (br. m, 1H, both diastereomers, superimposed with CD3OH-signal), 3.12-2.96 (br. m, 1H, both diastereomers), 2.90-2.75 (br. m, 1H, both diastereomers), 2.61, 2.55, 2.51, 2.47 (4s, 6H, both diastereomers) ppm. D.r. (by 1H NMR, 300 MHz, CD3OD):  ̃1.0. MS (ESI+): m/z=347.15 (M+H+)+, 695.35 (2M+H+)+. (ESI−): m/z=345.05 (M−H+)−, 693.30 (2M−H+)−. Various batches of mono- or dihydrochloride salts of (3) were prepared by primary lyophilization of solutions of (3) in aqueous acetonitrile (MeCN) containing either 1.0 eq. of 1.0 N hydrochloric acid (HCl) or an excess of 1.0 N or higher concentrated hydrochloric acid (HCl).
Example 4
4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]-3-methyl-butanoic acid (4)




Step A: Methyl (E/Z)-3-(3-nitrophenyl)but-2-enoate (4a)
Following the General Procedure of Description 2 (Variant B), methyl (E/Z)-3-(3-nitrophenyl)but-2-enoate (4a) was prepared from commercial 3′-nitroacetophenone (m-nitroacetophenone) (3.44 g, 20.44 mmol), trimethyl phosphonoacetate (3.71 mL, 4.17 g, 22.90 mmol), and sodium hydride (NaH) (550 mg, 22.91 mmol, 916 mg of 60 wt-% suspension in mineral oil) in anhydrous N,N-dimethylformamide (DMF) (70 mL). Aqueous work-up yielded 5.23 g of the target compound (4a) as yellow needles. The material obtained consisted of a mixture of geometric isomers ((E)/(Z)-isomeric mixture) of methyl (E)-3-(3-nitrophenyl)but-2-enoate (major isomer) and methyl (Z)-3-(3-nitrophenyl)but-2-enoate(minor isomer) in a ratio of approximately 4:1 by 1H NMR (300 MHz, CDCl3) and small amounts of residual solvents and trimethyl phosphonoacetate (HWE-reagent). The mixture was of sufficient purity to be used directly in the next step without further isolation and purification. Rf ((E)-Isomer):  ̃0.43 (EtOAc/hexane=1:4 v/v); Rf ((Z)-Isomer):  ̃0.32 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3, both isomers): δ 8.32 (br. dd, J=2.1, 0.9 Hz, 1H, major isomer), 8.22 (ddd, J=8.4, 2.1, 1.2 Hz, 1H, major isomer, partially superimposed with minor isomer), 8.08-7.99 (br. m, 1H, minor isomer), 7.79 (ddd, J=8.1, 2.1, 1.2 Hz, 1H, major isomer, partially superimposed with minor isomer), 7.56 (t, J=8.1 Hz, 1H, major isomer partially superimposed with minor isomer), 6.20 (q, J=1.2 Hz, 1H, major isomer), 6.01 (q, J=1.2 Hz, 1H, minor isomer), 3.78 (s, 3H, major isomer), 3.57 (s, 3H, minor isomer), 2.61 (d, J=1.2 Hz, 3H, major isomer), 2.21 (d, J=1.5 Hz, 3H, minor isomer) ppm. D.r. (1H NMR, 300 MHz, CDCl3):  ̃4.
Step B: Methyl 3-methyl-4-nitro-3-(3-nitrophenyl)butanoate (4b)
Following the General Procedure of Description 3, methyl 3-methyl-4-nitro-3-(3-nitrophenyl)butanoate (4b) was prepared from methyl (E/Z)-3-(3-nitrophenyl)but-2-enoate (4a) ( ̃4.78 g. g,  ̃18.44 mmol) in neat nitromethane (MeNO2) (100 mL, 113.7 g, 1.86 mol) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (10.0 mL, 10.2 g, 66.9 mmol). Purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane (1:4 v/v→1:3 v/v) afforded 353 mg (9% yield) of recovered starting material (4a) (pure methyl (E)-3-(3-nitrophenyl)but-2-enoate) and 3.21 g (68% yield based on recovered starting material) of the title compound (4b) an orange viscous oil. Rf:  ̃0.43 (EtOAc/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.23 (br. t, J=2.1H, 1H), 8.17 (ddd, J=8.1, 2.4, 1.2 Hz, 1H), 7.68 (ddd, J=7.8, 1.8, 0.9 Hz, 1H), 7.56 (t, J=7.8 Hz, 1H), 4.97 (d, J=11.7 Hz, 1H), 4.92 (d, J=11.7 Hz, 1H), 3.63 (s, 3H), 3.00 (d, J=15.9 Hz, 1H), 2.96 (d, J=16.2 Hz, 1H), 1.70 (s, 3H) ppm.
Step C: 4-(3-Aminophenyl)-4-methyl-pyrrolidin-2-one (4c)
Following the General Procedure of Description 4, 4-(3-aminophenyl)-4-methyl-pyrrolidin-2-one (4c) was prepared from methyl 3-methyl-4-nitro-3-(3-nitrophenyl)butanoate (4b) (1.41 g, 5.00 mmol), freshly washed active Raney®-3202 nickel (about 5 mL of slurry) in ethanol (EtOH) (70 mL) using a Parr hydrogenation apparatus under about 50 psi hydrogen pressure to afford 880 mg (93% yield) of the target compound (4c) as an off-white to beige powder. 1H NMR analysis (300 MHz, CD3OD) and TLC analysis showed that the material thus obtained consisted exclusively of the lactam (cyclized form). The material was of sufficient purity to be used directly and without further isolation and purification in the next step. M.p.: Rf:  ̃0.51 (dichloromethane (DCM)/methanol (MeOH)=9:1 v/v). 1H NMR (300 MHz, CD3OD): δ7.06 (br. t, J=8.1 Hz, 1H), 6.64-6.54 (m, 3H), 3.60 (d, J=9.9 Hz, 1H), 3.46 (d, J=9.9 Hz, 1H), 2.73 (d, J=16.5 Hz, 1H), 2.37 (d, J=16.5 Hz, 1H), 1.42 (s, 3H) ppm. MS (ESI+): m/z=191.10 (M+H+)+, 381.20 (2M+H+)+.
In a second reaction of the same scale, under comparable conditions, and using comparable procedures, the initially isolated material consisted exclusively of the non-cyclized form (methyl 4-amino-3-(3-aminophenyl)-3-methyl-butanoate) MS (ESI+): m/z=223.20 (M+H)+. The crude material was dissolved/suspended in a sealed tube in toluene (about 25 mL) and heated to about 100° C. (oil bath temperature) for overnight to facilitate lactam formation (TLC reaction control). The organic solution was evaporated under reduced pressure using a rotary evaporator to afford a beige-brown waxy solid that was further purified by silica gel column chromatography using mixtures of dichloromethane (DCM) and methanol (MeOH) as eluent (DCM/MeOH=95:5→93:7) to afford the title compound (4c) as a beige solid. The analytical data corresponded to the proposed structure and was identical to that obtained from the direct lactamization method.
Step D: 4-[3-(Bis(2-chloroethyl)amino)phenyl]-4-methyl-pyrrolidin-2-one (4d)
Following the General Procedure of Description 17(Variant A) 4-[3-(bis(2-chloroethyl)amino)phenyl]-4-methyl-pyrrolidin-2-one (4d) was prepared from 4-(3-aminophenyl)-4-methyl-pyrrolidin-2-one (4c) (571 mg, 3.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.91 mL, 15.0 mmol), and sodium cyanoborohydride (NaBH3CN) (754 mg, 12.0 mmol) in a mixture of methanol (MeOH) (10 mL) and trifluoroacetic acid (TFA) (5.0 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc) afforded 876 mg (92% yield) of the title compound (4d) as a colorless oil that solidified to a colorless solid. Rf:  ̃0.38 (EtOAc). Rf:  ̃0.58 (dichloromethane (DCM)/methanol (MeOH)=9:1 v/v). 1H NMR (300 MHz, CDCl3): δ 7.22 (d, J=8.1 Hz, 1H), 6.64-6.55 (m, 2H), 6.47 (t, J=1.8 Hz, 1H), 6.28-621 (br. m, 1H), 3.77-3.59 (m, superimposed signals, 9H), 3.48 (dd, J=9.3, 1.2 Hz, 1H), 2.76 (d, J=16.2 Hz, 1H), 2.44 (d, J=16.5 Hz, 1H), 1.49 (s, 3H) ppm. MS (ESI+): m/z=329.15 (M+H+)+.
Step E: 4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]-3-methyl-butanoic acid (4)
Following the General Procedure of Description 22, 4-amino-3-[3-[bis(2-chloroethyl)amino]phenyl]-3-methyl-butanoic acid (4) was prepared from 4-[3-(bis(2-chloroethyl)amino)phenyl]-4-methyl-pyrrolidin-2-one (4d) (671 mg, 2.13 mmol) by hydrolysis in concentrated hydrochloric acid (HCl) (about 12 mL) at reflux temperature for about 15 hours to afford the title compound (4) as a dihydrochloride salt after isolation using evaporation and lyophilization. Two-hundred-fifty (250) mg of the material thus obtained was purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 190 mg (76% recovery) of the title compound (4) as an almost colorless dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and/or in vivo evaluation. LC/UV (from LC/MS): Rt=0.98 min. 98.1% purity by AUC at X=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.52 (t, J=8.1 Hz, 1H), 7.47-7.41 (br. m, 1H), 7.37-7.24 (br. M, 2H), 4.03 (br. t, J=6.6 Hz, 4H), 3.68 (br. t, J=6.3 Hz, 4H), 3.48 (d, J=13.2 Hz, 1H), 3.42 (d, J=13.2 Hz, 1H), 2.91 (d, J=15.3 Hz, 1H), 2.84 (d, J=15.3 Hz, 1H), 1.62 (s, 3H) ppm. MS (ESI+): m/z=333.10 (M+H+)+. (ESI−): m/z=331.10 (M−H+)−, 665.35 (2M−H+)−. Various batches of mono- or dihydrochloride salts of (4) were prepared by primary lyophilization of solutions of (4) in aqueous acetonitrile (MeCN) containing either 1.0 eq. of 1.0 N hydrochloric acid (HCl) or an excess of 1.0 N or higher concentrated hydrochloric acid (HCl).
Example 5
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5)
Method A




Step A: 1-(2-Methyl-5-nitro-phenyl)ethanone (5a)
Following the General Procedure of Description 1 (Variant A), 1-(2-methyl-5-nitro-phenyl)ethanone (5a) was prepared commercial 1-(o-tolyl)ethanone (2′-methylacetophenone) (12.3 g, 91.9 mmol) in a mixture of glacial acetic acid (HOAc) (40 mL) and white fuming nitric acid (min. 90 wt-% HNO3) (80 mL). After aqueous work-up, the crude material consisted mainly of a mixture of two regioisomers 1-(2-methyl-5-nitro-phenyl)ethanone (5a) and 1-(2-methyl-3-nitro-phenyl)ethanone (5a′), which were separated by silica gel column chromatography using a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:9) as an eluent to afford 5.30 g (32% yield) the title compound (5a) and the corresponding regioisomer (5a′) (1-(2-methyl-3-nitro-phenyl)ethanone) as a yellow solid (see also Example 6). Rf(5a):  ̃0.51 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf(5a):  ̃0.25 (ethyl acetate (EtOAc)/hexane=1:9 v/v). 1H NMR (300 MHz, CDCl3, (5a)): δ 8.55 (d, J=2.4 Hz, 1H), 8.22 (dd, J=8.7, 2.7 Hz, 1H), 7.44 (d, J=8.7 Hz, 1H), 2.67 (s, 3H), 2.63 (s, 3H) ppm. Rf(5a′):  ̃0.34 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf(5a′):  ̃0.16 (ethyl acetate (EtOAc)/hexane=1:9 v/v). 1H NMR (300 MHz, CDCl3, (5a′)): δ 7.84 (dd, J=7.8, 1.2H, 1H), 7.72 (dd, J=7.5, 1.2 Hz, 1H), 7.46-7.38 (m, 1H), 2.61 (s, 3H), 2.52 (s, 3H) ppm.
Step B: 1-(2-Methyl-5-nitro-phenyl)ethanol (5b)
Following the General Procedure of Description 5, 1-(2-methyl-5-nitro-phenyl)ethanol (5b) was prepared from 1-(2-methyl-5-nitro-phenyl)ethanone (5a) (5.30 g, 29.6 mmol) and sodium borohydride (NaBH4) (567 mg, 15.0 mmol) in ethanol (EtOH) (50 mL). After aqueous work-up, 5.51 g ( ̃quantitative yield) of the title compound (5b) were obtained as a yellow viscous oil that solidified upon standing at room temperature. The material was of sufficient purity to be used directly and without additional isolation and purification in the next step. Rf:  ̃0.22 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.41 (d, J=2.4 Hz, 1H), 8.00 (dd, J=8.7, 2.7 Hz, 1H), 7.27 (d, J=8.7 Hz, 1H), 5.16 (q, J=6.3 Hz, 1H), 2.43 (s, 3H), 1.49 (d, J=6.3 Hz, 3H) ppm.
Step C: 2-(1-Bromoethyl)-1-methyl-4-nitro-benzene (5c)
Following the General Procedure of Description 9, 2-(1-bromoethyl)-1-methyl-4-nitro-benzene (5c) was prepared from 1-(2-methyl-5-nitro-phenyl)ethanol (5b) (5.51 g, 29.6 mmol) and 1.0 M hydrogen bromide in acetic acid (HBr/HOAc) (prepared from 33 wt-% HBr in HOAc (5.70 mL, 32.6 mmol) and glacial acetic acid (26.9 mL)). After aqueous work-up, 6.95 g (96% yield) of the title compound (5c) were obtained as a brown-colored viscous oil that crystallized to a beige solid upon standing at room temperature. The material was of sufficient purity to be used directly and without additional isolation and purification in the next step. Rf:  ̃0.71 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.40 (d, J=2.1 Hz, 1H), 8.05 (dd, J=8.1, 2.1 Hz, 1H), 7.33 (d, J=8.4 Hz, 1H), 5.35 (q, J=7.2 Hz, 1H), 2.51 (s, 3H), 2.13 (d, J=6.9 Hz, 3H) ppm.
Step D: 2-(2-Methyl-5-nitro-phenyl)propanenitrile (5d)
Following the General Procedure of Description 10, 2-(2-methyl-5-nitro-phenyl)propanenitrile (5d) was prepared from 2-(1-bromoethyl)-1-methyl-4-nitro-benzene (5c) (6.95 g, 28.5 mmol) and sodium cyanide (NaCN) (1.66 g, 33.7 mmol) in anhydrous N,N-dimethylformamide (DMF) (90 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=2:5→1:3 v/v) afforded 3.93 g (74% yield) of the title compound (5d) as a reddish-brownish solid. Rf:  ̃0.38 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf:  ̃0.58 (ethyl acetate (EtOAc)/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.32 (d, J=2.1 Hz, 1H), 8.11 (dd, J=8.1, 2.1 Hz, 1H), 7.39 (d, J=8.4 Hz, 1H), 4.10 (q, J=7.2 Hz, 1H), 2.50 (s, 3H), 1.70 (d, J=7.2 Hz, 3H) ppm.
Step E: Ethyl 3-cyano-3-(2-methyl-5-nitro-phenyl)butanoate (5e)
Following the General Procedure of Description 11 (Variant A), ethyl 3-cyano-3-(2-methyl-5-nitro-phenyl)butanoate (5e) was prepared from 2-(2-methyl-5-nitro-phenyl)propanenitrile (5d) (641 mg, 3.37 mmol) by deprotonation with a commercial solution of lithium diisopropylamide (LDA) (1.8 M in heptane/THF/ethylbenzene) (2.06 mL, 3.71 mmol) and subsequent alkylation with commercial, neat ethyl 2-bromoacetate (BrCH2CO2Et) (746 μL, 1.13 g, 6.74 mmol; dried over 4 Å molecular sieves (4 Å MS) prior to use) in anhydrous tetrahydrofuran (THF) (freshly distilled over sodium benzophenone ketyl radical) (17 mL). Purification by silica gel column chromatography using an ethyl acetate (EtOAc)/hexane mixture (EtOAc/hexane=1:4 v/v) afforded 735 mg of an orange oil. 1H NMR analysis (300 MHz, CDCl3) of the purified product showed an inseparable mixture in a molar ratio of the title compound (5e) to starting material (5d) of about 63/37, corresponding to approximately 463 mg (approximately 50% yield) of the title compound (5e). Rf:  ̃0.54 (ethyl acetate (EtOAc)/hexane=1:2 v/v)1H NMR (300 MHz, CDCl3): δ 8.19 (d, J=2.1 Hz, 1H), 8.11 (dd, J=8.4, 2.4 Hz, 1H), 7.42 (d, J=8.4 Hz, 1H), 4.10 (q, J=7.2 Hz, 2H), 3.14 (d, J=15.6 Hz, 1H), 3.01 (d, J=15.9 Hz, 1H), 2.78 (s, 3H), 2.05 (s, 3H), 1.18 (t, J=7.2 Hz, 3H) ppm.
Step F: 4-(3-Amino-6-methyl-phenyl)-4-methyl-pyrrolidin-2-one (5f)
Following the General Procedure for of Description 4, 4-(3-amino-6-methyl-phenyl)-4-methyl-pyrrolidin-2-one (5f) was prepared from a mixture of ethyl 3-cyano-3-(2-methyl-5-nitro-phenyl)butanoate (5e) and 2-(2-methyl-5-nitro-phenyl)propanenitrile (5d) (containing  ̃463 mg,  ̃1.68 mmol of (5e)), freshly washed active Raney®-3202 nickel (about 6 mL of slurry) in ethanol (EtOH) (60 mL) using a Parr hydrogenation apparatus under about 60 psi hydrogen pressure. 1H NMR analysis (300 MHz, CDCl3) and TLC analysis showed that the reaction mixture consisted mainly of partially reduced starting material ethyl 3-(5-amino-2-methyl-phenyl)-3-cyano-butanoate (5f′′), completely reduced non-cyclized starting material ethyl 4-amino-3-(5-amino-2-methyl-phenyl)-3-methyl-butanoate (5f′), and the title compound 4-(3-amino-6-methyl-phenyl)-4-methyl-pyrrolidin-2-one (5f). A concentrated filtration alcoholic solution (about 10 mL) of the crude reaction mixture was stirred for about 2 hours at about 60-80° C. to facilitate lactamization of non-cyclized reduction product (5f′) to the title compound (5f) together with slow evaporation of residual solvent. The material thus obtained was further purified by silica gel column chromatography using dichloromethane (DCM) and methanol (MeOH) mixtures (DCM/MeOH=96:4→95:5 v/v) as eluents to afford 250 mg (71% yield) of the target compound (5f) as a colorless solid. Rf:  ̃0.60 (DCM/MeOH=9:1 v/v). Rf:  ̃0.38 (DCM/MeOH=95:5 v/v). 1H NMR (300 MHz, CDCl3): δ 6.93 (d, J=8.1 Hz, 1H), 6.51 (dd, J=8.1, 2.4 Hz, 1H), 6.40 (d, J=2.1 Hz, 1H), 6.10-6.00 (br. m, 1H), 3.75 (br. d, J=9.3 Hz, 1H), 3.59 (br. dd, J=9.0, 1.8 Hz, 1H, superimposed), 3.59 (br. s, 2H, superimposed), 2.82 (d, J=16.2 Hz, 1H), 2.54 (d, J=16.2 Hz, 1H), 2.25 (s, 3H), 1.46 (s, 3H) ppm. MS (ESI+): m/z=205.20 (M+H+)+, 409.3 (2M+H+)+.
Step G: 4-[5-(Bis(2-chloroethyl)amino)-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (5g)
Following the General Procedure of Description 17 (Variant A), 4-[5-(bis(2-chloroethyl)amino)-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (5g) was prepared from 4-(3-amino-6-methyl-phenyl)-4-methyl-pyrrolidin-2-one (5f) (250 mg, 1.22 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (777 μL, 6.11 mmol), and sodium cyanoborohydride (NaBH3CN) (307 mg, 4.89 mmol) in a mixture of methanol (MeOH) (4.0 mL) and trifluoroacetic acid (TFA) (2.0 mL). Purification by silica gel column chromatography with ethylacetate (EtOAc) afforded 403 mg ( ̃quantitative yield) of the title compound (5g) as a colorless oil that solidified to a colorless solid. Rf:  ̃0.42 (EtOAc). Rf:  ̃0.54 (dichloromethane (DCM)/methanol (MeOH)=9:1 v/v). 1H NMR (300 MHz, CDCl3): δ 7.02 (d, J=8.4 Hz, 1H), 6.51 (dd, J=8.4, 2.7 Hz, 1H), 6.42-6.35 (br. m, 2H), 3.77 (br. d, J=9.3 Hz, 1H), 3.73-3.57 (br. m, 9H, superimposed), 2.85 (d, J=15.9 Hz, 1H), 2.58 (d, J=16.2 Hz, 1H), 2.26 (s, 3H), 1.48 (s, 3H) ppm. MS (ESI+): m/z=329.15 (M+H+)+.
Step H: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5) was prepared from 4-[5-(bis(2-chloroethyl)amino)-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (5g) (401 mg, 1.22 mmol) by hydrolysis in concentrated hydrochloric acid (HCl) (about 15 mL) at reflux temperature for about 24 h to afford 494 mg (96% yield) the title compound (5) as a dihydrochloride salt after isolation using evaporation and lyophilization together with about 50% of starting material (5g). Two-hundred-fifty (250) mg of the material thus obtained was purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 65 mg (52% recovery considering purity of the crude reaction product) of the title compound (5) as a slightly brown dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and/or in vivo evaluation. LC/UV (from LC/MS): Rt=1.20 min. 99.0% purity by AUC at X=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.48-7.31 (br. m, 3H), 4.04 (br. t, J=6.6 Hz, 4H), 3.70-3.59 (br. m, 5H), 3.41 (d, J=13.5 Hz, 1H), 3.10 (d, J=16.2 Hz, 1H), 2.87 (d, J=15.9 Hz, 1H), 2.60 (s, 3H), 1.77 (s, 3H) ppm. MS (ESI+): m/z=347.15 (M+H+)+. (ESI−): m/z=345.05 (M−H+)−, 693.30 (2M−H+)−. Various batches of mono- or dihydrochloride salts of (5) were prepared by primary lyophilization of solutions of (5) in aqueous acetonitrile (MeCN) containing either 1.0 eq. of 1.0 N hydrochloric acid (HCl) or an excess of 1.0 N or higher concentrated hydrochloric acid (HCl).
Method B







Step I: (2-Methyl-5-nitro-phenyl)methanol (5i)
Following the General Procedure of Description 6, 2-methyl-5-nitro-phenyl)methanol (5i) was prepared from commercial 2-methyl-5-nitro benzoic acid (50.0 g, 276 mmol) with borane dimethylsulfide complex (2.0 M BH3.SMe2 in THF) (166 mL, 332 mmol) in anhydrous tetrahydrofuran (400 mL) to yield 44.0 g ( ̃quantitative yield) of the target compound (5i) as a pale yellow solid which was of sufficient purity to be used directly in the next step without further isolation and purification procedures. Rf:  ̃0.50 (EtOAc/Hxn=1:1 v/v). 1H NMR (300 MHz, CDCl3): δ 8.30 (d, J=2.4 Hz, 1H), 8.05 (dd, J=8.4, 2.4 Hz, 1H), 7.31 (d, J=8.1 Hz, 1H), 4.78 (d, J=5.1 Hz, 2H), 2.41 (s, 3H), 1.87 (br. t, J=5.1 Hz, 1H) ppm.
Step J: 2-Methyl-5-nitro-benzaldehyde (5j)
Following the General Procedure of Description 7 (Variant A), 2-methyl-5-nitro-benzaldehyde (5j) (Beech, J. Chem. Soc. (C), 1967, 2374-2375) was prepared from 2-methyl-5-nitro-phenyl)methanol (5i) (16.3 g, 97.3 mmol) in the presence of dimethylsulfoxide (DMSO) (56.8 mL, 62.6 g, 0.80 mol), triethylamine (TEA, Et3N) (69.5 mL, 50.6 g, 0.50 mmol), and sulfur trioxide pyridine complex (SO3.pyridine) (47.8 g, 0.30 mol) in dichloromethane (600 mL). Purification by silica gel column chromatography using a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:4 v/v) afforded 12.6 g (78% yield) of the target compound (5j) as a yellow-beige solid.
Following the General Procedure of Description 7 (Variant B), 2-methyl-5-nitro-benzaldehyde (5j) (Beech, J. Chem. Soc. (C), 1967, 2374-2375) was prepared from 2-methyl-5-nitro-phenyl)methanol (5i) (4.03 g, 24.1 mmol) in the presence of manganese dioxide (MnO2) (22 g, 254 mmol) in dichloromethane (DCM) (100 mL). Work-up afforded 3.56 g (89% yield) of the target compound (5j) as a pale yellow to beige solid. The material was of sufficient purity to be used directly in the next step without further isolation and purification procedures.
Following the General Procedure of Description 7 (Variant C), 2-methyl-5-nitro-benzaldehyde (5j) (Beech, J. Chem. Soc. (C), 1967, 2374-2375) was prepared from 2-methyl-5-nitro-phenyl)methanol (5i) (5.00 g, 29.9 mmol) in the presence of pyridinium chlorochromate (PCC) (9.02 g, 41.9 mmol) in dichloromethane (DCM) (150 mL). Purification by silica gel column chromatography using mixtures of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:4 v/v→EtOAc/hexane=1:4 v/v) afforded 4.67 g (94% yield) of the target compound (5j) as a yellow-beige solid. Rf:  ̃0.76 (EtOAc/Hxn=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 10.32 (s, 1H), 8.65 (dd, J=2.7 Hz, 1H), 8.31 (dd, J=8.4, 2.4 Hz, 1H), 7.47 (d, J=8.4 Hz, 1H), 2.79 (s, 3H) ppm.
Step K: 1-(2-Methyl-5-nitro-phenyl)ethanol (5k)
Following the General Procedure of Description 8, MeTiCl3 was freshly prepared prior to use from commercial titanium tetrachloride (TiCl4) (10.0 mL, 17.3 g, 91.0 mmol) and methyl lithium (MeLi) (1.6 M in Et2O, 57.0 mL, 91.0 mmol) in anhydrous diethyl ether (Et2O) (400 mL). A solution of 2-methyl-4-nitro-benzaldehyde (5j) (12.4 g, 75.01 mmol) in anhydrous Et2O (200 mL) was added. Aqueous work-up afforded 13.7 g (99% yield) of the target compound (5k) as a yellow solid. The material was of sufficient purity to be used directly in the next step without further isolation and purification procedures. Rf:  ̃0.47 (EtOAc/Hxn=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.41 (d, J=2.4 Hz, 1H), 8.00 (dd, J=8.4, 2.4 Hz, 1H), 7.27 (d, J=9.0 Hz, 1H), 5.16 (q, J=6.3 Hz, 1H), 2.43 (s, 3H), 1.96 (br. s, 1H), 1.50 (d, J=6.3 Hz, 3H) ppm. The analytical data correspond to the data of compound (5b) of Method A.
Step L: 2-(1-Bromoethyl)-1-methyl-4-nitro-benzene (51)
Following the General Procedure of Description 9, 2-(1-bromoethyl)-1-methyl-4-nitro-benzene (5l) was prepared from 1-(2-methyl-5-nitro-phenyl)ethanol (5k) (13.7 g, 75.5 mmol) and  ̃1.0 M hydrogen bromide in acetic acid (HBr/HOAc) (prepared from 33 wt-% HBr in HOAc (14.6 mL, 83.1 mmol) and glacial acetic acid (68 mL)). After aqueous work-up, 17.6 g (95% yield) of the title compound (5m) were obtained as a brown-colored viscous oil that crystallized to a beige solid upon standing at room temperature. The material was of sufficient purity to be used directly and without additional isolation and purification in the next step. Rf:  ̃0.76 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.40 (d, J=2.4 Hz, 1H), 8.05 (dd, J=8.7, 2.4 Hz, 1H), 7.33 (d, J=8.4 Hz, 1H), 5.36 (q, J=6.9 Hz, 1H), 2.51 (s, 3H), 2.13 (d, J=6.9 Hz, 3H) ppm. Analytical data correspond compound (5c) of Method A.
Step M: 2-(2-Methyl-5-nitro-phenyl)propanenitrile (5m)
Following the General Procedure of Description 10, 2-(2-methyl-5-nitro-phenyl)propanenitrile (5m) was prepared from 2-(1-bromoethyl)-1-methyl-4-nitro-benzene (5l) (12.0 g, 49.3 mmol) and sodium cyanide (NaCN) (2.91 g, 52.2 mmol) in anhydrous N,N-dimethylformamide (DMF) (165 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:4 v/v→3:7 v/v→1:1 v/v) afforded 11.3 g (82% yield) of the title compound (5m) as a reddish-brownish solid. Rf:  ̃0.38 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf:  ̃0.58 (ethyl acetate (EtOAc)/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.32 (d, J=2.4 Hz, 1H), 8.11 (dd, J=8.4, 2.4 Hz, 1H), 7.39 (d, J=8.4 Hz, 1H), 4.10 (q, J=7.2 Hz, 1H), 2.50 (s, 3H), 1.70 (d, J=7.2 Hz, 3H) ppm. The analytical data correspond to the data of compound (5d) of Method A.
Step N: tert-Butyl 3-cyano-3-(2-methyl-5-nitro-phenyl)butanoate (5n)
Following the General Procedure of Description 11 (Variant A), tert-butyl 3-cyano-3-(2-methyl-5-nitro-phenyl)butanoate (5n) was prepared from 2-(2-methyl-5-nitro-phenyl)propanenitrile (5m) (4.56 g, 24.0 mmol) by deprotonation with a commercial solution of lithium diisopropylamide (LDA) (1.8 M in heptane/THF/ethylbenzene) (13.8 mL, 27.6 mmol) and subsequent alkylation with commercial, neat tert-butyl 2-bromoacetate (BrCH2CO2tBu) (6.48 mL, 8.56 g, 43.9 mmol) in anhydrous tetrahydrofuran (THF) (freshly distilled over sodium benzophenone ketyl radical) (120 mL). Purification by silica gel column chromatography using ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:4 v/v→1:3 v/v) afforded 3.43 g (47% yield) of the title compound (5n) a yellow oil. Rf:  ̃0.49 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf:  ̃0.75 (ethyl acetate (EtOAc)/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.20 (d, J=2.7 Hz, 1H), 8.10 (dd, J=8.4, 2.4 Hz, 1H), 7.42 (d, J=8.4 Hz, 1H), 3.05 (d, J=15.3 Hz, 1H), 2.96 (d, J=15.3 Hz, 1H), 2.78 (s, 3H), 1.98 (s, 3H), 1.34 (s, 9H) ppm.
Step O: tert-Butyl 3-(5-amino-2-methyl-phenyl)-3-cyano-butanoate (5o)
Following the General Procedure of Description 12, tert-butyl 3-(5-amino-2-methyl-phenyl)-3-cyano-butanoate (5o) was prepared by reduction of tert-butyl 3-cyano-3-(2-methyl-5-nitro-phenyl)butanoate (5n) (5.89 g, 19.4 mmol) with nickel acetate tetrahydrate (Ni(OAc)2.4H2O) (964 mg, 3.87 mmol) and sodium borohydride (NaBH4) (2.93 g, 77.5 mmol) in a mixture of acetonitrile (MeCN) (55 mL) and water (5.5 mL). Purification by silica gel column chromatography using a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:2 v/v) afforded 5.23 g (98% yield) of the target compound (5o) as a viscous yellow oil. Rf:  ̃0.40 (EtOAc/hexane=1:2 v/v). Rf:  ̃0.20 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 6.97 (d, J=8.1 Hz, 1H), 6.70 (d, J=2.1 Hz, 1H), 6.56 (dd, J=8.1, 2.1 Hz, 1H), 3.60 br. s, 2H), 2.97 (d, J=14.7 Hz, 1H), 2.81 (d, J=15.3 Hz, 1H), 2.49 (s, 3H), 1.88 (s, 3H), 1.35 (s, 9H) ppm. MS (ESI+): m/z=275.25 (M+H+)+. (549.35 (2M+H+)+.
Step P: tert-Butyl 3-(5-benzyloxycarbonylamino-2-methyl-phenyl)-3-cyano-butanoate (5p)
Following the General Procedure of Description 13, tert-butyl 3-(5-benzyloxycarbonylamino-2-methyl-phenyl)-3-cyano-butanoate (5p) was prepared from tert-butyl 3-(5-amino-2-methyl-phenyl)-3-cyano-butanoate (5o) (5.23 g, 19.1 mmol), and CbzCl) (3.16 mL, 3.58 g (3.77 g of 95 wt-% purity material), 21.0 mmol), and freshly powdered sodium hydrogencarbonate (NaHCO3) (1.76 g, 21.0 mmol) in tetrahydrofuran (THF) (90 mL). Purification by silica gel column chromatography using an ethyl acetate (EtOAc)/hexane mixture (EtOAc/hexane=1:3 v/v) afforded 6.86 g (88% yield) of the title compound (5p) as a viscous pale yellow to colorless oil. Rf:  ̃0.43 (EtOAc/hexane=1:4 v/v). Rf:  ̃0.75 (EtOAc/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 7.48-7.30 (m, 6H), 7.26-7.20 (m, 1H), 7.14 (d, J=8.1 Hz, 1H), 6.69 (br. s, 1H), 5.20 (s, 2H), 2.99 (d, J=15.0 Hz, 1H), 2.99 (d, J=15.0 Hz, 1H), 2.82 (d, J=15.3 Hz, 1H), 2.58 (s, 3H), 1.90 (s, 3H), 1.34 (s, 9H) ppm. MS (ESI+): m/z=431.15 (M+H+)+.
Step Q: tert-Butyl 3-(5-benzyloxycarbonylamino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5q)
Following the General Procedure of Description 14, tert-butyl 3-(5-benzyloxycarbonylamino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5q) was prepared by reduction of tert-butyl 3-(5-benzyloxycarbonylamino-2-methyl-phenyl)-3-cyano-butanoate (5p) (6.64 g, 16.3 mmol) with nickel(II) chloride hexahydrate (NiCl2.6H2O) (1.93 g, 8.13 mmol) and sodium borohydride (NaBH4) (4.68 g, 123.6 mmol) in the presence of di-tert-butyl-dicarbonate (Boc-anhydride, Boc2O) (7.27 g, 33.3 mmol) in methanol (MeOH) (140 mL). Aqueous work-up followed repeated titruation of the crude powdered material overnight with hexane (2×50 mL (removal of excess Boc2O) yielded 6.66 g of a colorless powder after filtration, washing, and drying under reduced pressure. 1H NMR analysis (300 MHz, CDCl3) of the isolated material showed that the material consisted of a mixture of the title compound (5q) (82 mol-%, 5.53 g (66% yield)) and the side product tert-butyl 4-(tert-butoxycarbonylamino)-3-[5-(tert-butoxycarbonylamino)-2-methyl-phenyl]-3-methyl-butanoate (5q′) (18 mol-%, 1.13 g). The combined filtrates were evaporated under reduced pressure. The residue was purified by silica gel column chromatography using ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:5 v/v→1:4 v/v) to yield 870 mg of a colorless viscous oil. 1H NMR analysis (300 MHz, CDCl3) of the material purified by silica gel chromatography showed that the material consisted of a mixture of the title compound (5q) (44 mol-%, 397 mg (5% yield)) and the side product (5q′) (56 mol-%, 641 mg) (5.93 g, 71% total yield). Rf (5q)  ̃0.41 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3, (5q)): δ 7.42-7.28 (m, 6H), 7.18 (d, J=2.1 Hz, 1H), 7.07 (d, J=8.4 Hz, 1H), 6.63 (br. s, 1H), 5.19 (s, 2H), 4.60-4.50 (br. m, 1H), 3.63 (dd, J=13.8, 7.8 Hz, 1H), 3.46 (dd, J=13.8, 4.8 Hz, 1H), 2.90 (d, J=14.1 Hz, 1H), 2.52 (s, 3H, partially superimposed), 2.51 (d, J=14.1 Hz, 1H, partially superimposed), 1.61 (s, 3H), 1.40 (s, 9H), 1.19 (s, 9H) ppm. MS (ESI+, (5q)): m/z=535.25 (M+Na+)+. Rf (5q′)  ̃0.50 (EtOAc/hexane=1:4 v/v). Rf (5q′):  ̃0.75 (EtOAc/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3, (5q′)): δ 7.30 (br. d, J=7.5 Hz, 1H), 7.09 (d, J=2.4 Hz, 1H), 7.04 (d, J=8.4 Hz, 1H), 6.41 (br. s, 1H), 4.60-4.50 (br. m, 1H), 3.62 (dd, J=13.5, 7.8 Hz, 1H), 3.47 (dd, J=13.8, 4.8 Hz, 1H), 2.89 (d, J=14.1 Hz, 1H), 2.51 (d, J=14.1 Hz, 1H, partially superimposed), 2.50 (s, 3H), 1.54 (s, 3H), 1.51 (s, 9H), 1.41 (s, 9H), 1.20 (s, 9H) ppm. MS (ESI+, (5q′)): m/z=501.25 (M+Na+)+.
Step R: tert-Butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5r)
Following the General Procedure of Description 16, tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5r) was prepared by hydrogenolysis of tert-butyl 3-(5-benzyloxycarbonylamino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5q) (6.66 g of a mixture of (5q) (5.53 g, 10.8 mmol) and (5q′) (10.8 mmol)) in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water (2.20 g) in a mixture of methanol (MeOH) (50 mL) and ethyl acetate (EtOAc) (20 mL) and under an atmosphere of hydrogen ( ̃15 psi, H2-balloon). Purification by silica gel column chromatography using ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:3 v/v→1:2 v/v) afforded 3.92 g (80% yield) of the title compound (5r) as a colorless very viscous oil and 1.03 g of the side product (5q′) as a colorless solid. Rf:  ̃0.42 (EtOAc/hexane=1:2 v/v). Rf:  ̃0.14 (EtOAc/hexane=1:4 v/v). NMR (300 MHz, CDCl3): δ 6.89 (d, J=7.8 Hz, 1H), 6.64 (d, J=1.8 Hz, 1H), 6.49 (dd, J=8.1, 2.7 Hz, 1H), 4.60-4.46 (br. m, 1H), 3.60 (dd, J=13.5, 7.8 Hz, 1H, partially superimposed), 3.51 (br. s, 2H, partially superimposed), 3.47 (dd, J=13.8, 4.5 Hz, 1H, partially superimposed), 2.86 (d, J=13.5 Hz, 1H), 2.49 (d, J=14.1 Hz, 1H), 2.44 (s, 3H), 1.52 (s, 3H), 1.41 (s, 9H) 1.22 (s, 9H) ppm. MS (ESI+): m/z=379.25 (M+H+)+, 401.20 (M+Na+)+.
Step S: tert-Butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5s)
Following the General Procedure of Description 17 (Variant C), tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5s) was prepared from tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5r) (730 mg, 1.93 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.27 mL, 10.0 mmol), and sodium cyanoborohydride (NaBH3CN) (503 mg, 8.0 mmol) in a mixture of methanol (MeOH) (12 mL) and 85 wt-% phosphoric acid (H3PO4) (6 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:6 v/v) afforded 735 mg (76% yield) of the title compound (5s) as an almost colorless viscous oil that solidified to a slightly beige solid upon standing at room temperature. Rf:  ̃0.56 (EtOAc/Hexane=1:4 v/v). Rf:  ̃0.73 (EtOAc/Hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 6.99 (d, J=8.7 Hz, 1H), 6.63 (d, J=2.4 Hz, 1H), 6.50 (dd, J=8.7, 3.0 Hz, 1H), 4.64-4.50 (br. m, 1H), 3.76-3.56 (m, 8H), 3.45 (dd, J=13.8, 4.5 Hz, 1H), 2.90 (d, J=14.1 Hz, 1H), 2.51 (d, J=14.1 Hz, 1H), 2.46 (s, 3H), 1.55 (s, 3H), 1.41 (s, 9H, 1.20 (s, 9H) ppm. MS (ESI+): m/z=503.20 (M+H+)+, 525.20 (M+Na+)+.
Step T: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5)
Following the General Procedure of Description 23 (Variant A), 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5) was prepared from tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5s) (105 mg, 0.22 mmol) in a mixture of dichloromethane (DCM) (2.3 mL) and trifluoroacetic acid (TFA) (1.1 mL). Half of the solution (1.2 mL) was aliquoted off to yield 90 mg of the target compound (5) as a red oily to semi-solid di-trifluoroacetate salt after evaporation of solvents and final lyophilization from an aqueous solution. LC/UV (from LC/MS): Rt=1.07 min. 96.1% purity by AUC at λ=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.09 (d, J=8.7 Hz, 1H), 6.68 (d, J=2.7 Hz, 1H), 6.65 (dd, J=8.1, 2.7 Hz, 1H), 3.80-3.72 (m, 4H), 3.70-3.63 (m, 4H), 3.58 (d, J=13.5 Hz, 1H), 3.42 (d, J=13.5 Hz, 1H), 2.92 (s, 2H), 2.45 (3H), 1.68 (s, 3H) ppm. MS (ESI+): m/z=347.10 (M+H+)+.
Following the General Procedure of Description 23 (Variant B), 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5) was prepared from tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (5s) (398 mg, 0.79 mmol) in 2 N HCl in diethyl ether (2.0 N HCl in Et2O) (10 mL, 20 mmol) to yield 274 mg (82% recovery) of the target compound (5) as a slightly brownish powdery solid dihydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and in vivo evaluation. LC/UV (from LC/MS): Rt=1.15 min. 96.1% purity by AUC at λ=254 nm. LC/UV: Rt=7.33 min. 96.3% purity by AUC at λ=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.21 (d, J=8.4 Hz, 1H), 7.02-6.96 (br. d, 1H), 6.92 (br. d, J=8.1 Hz, 1H), 3.91-3.82 (br. m, 4H), 3.71-3.64 (br. m, 4H), 3.60 (d, J=13.5 Hz, 1H), 3.42 (d, J=13.5 Hz, 1H), 3.01 (d, J=16.2 Hz, 1H), 2.90 (d, J=16.2 Hz, 1H), 2.51 (s, 3H), 1.72 (s, 3H) ppm. MS (ESI+): m/z=347.10 (M+H+)+. (ESI−): m/z=345.05 (M−H+)−, 693.30 (2M−H+)−.
Example 6
4-Amino-3-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (6)




Step A: 1-(2-Methyl-3-nitro-phenyl)ethanone (6a)
Following the General Procedure of Description 1 (Variant A), 1-(2-methyl-3-nitro-phenyl)ethanone (6a) was prepared commercial 1-(o-tolyl)ethanone (2′-methylacetophenone) (2.02 g, 15.0 mmol) in a mixture of glacial acetic acid (HOAc) (10 mL) and white fuming nitric acid (min. 90 wt-% HNO3) (20 mL). After aqueous work-up, the crude material consisted mainly of a mixture of two regioisomers 1-(2-methyl-3-nitro-phenyl)ethanone (6a) and 1-(2-methyl-5-nitro-phenyl)ethanone (6a′) and which were separated by silica gel column chromatography using a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:9) as an eluent to afford 1.17 g (44% yield) the title compound (6a) and 1.10 g (41% yield) of the corresponding regioisomer (6a′) (1-(2-methyl-5-nitro-phenyl)ethanone) as a yellow solid. Rf (6a):  ̃0.34 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf(6a):  ̃0.16 (ethyl acetate (EtOAc)/hexane=1:9 v/v). 1H NMR (300 MHz, CDCl3, (6a)): δ 7.84 (dd, J=7.8, 1.2H, 1H), 7.72 (dd, J=7.5, 1.2 Hz, 1H), 7.46-7.38 (m, 1H), 2.61 (s, 3H), 2.52 (s, 3H) ppm. Rf(6a′):  ̃0.51 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf(6a′):  ̃0.25 (ethyl acetate (EtOAc)/hexane=1:9 v/v). 1H NMR (300 MHz, CDCl3, (6a′)): δ 8.55 (d, J=2.4 Hz, 1H), 8.22 (dd, J=8.7, 2.7 Hz, 1H), 7.44 (d, J=8.7 Hz, 1H), 2.67 (s, 3H), 2.63 (s, 3H) ppm.
Step B: 1-(2-Methyl-3-nitro-phenyl)ethanol (6b)
Following the General Procedure of Description 5, 1-(2-methyl-3-nitro-phenyl)ethanol (6b) was prepared from 1-(2-methyl-3-nitro-phenyl)ethanone (6a) (1.47 g, 8.22 mmol) and sodium borohydride (NaBH4) (156 mg, 4.11 mmol) in methanol (MeOH) (20 mL). After aqueous work-up, 1.52 g ( ̃quantitative % yield) of the title compound (6b) was obtained as a yellow viscous oil. The material was of sufficient purity to be used directly and without additional isolation and purification in the next step. Rf:  ̃0.47 (ethyl acetate (EtOAc)/hexane=1:2 v/v); Rf:  ̃0.17 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.81 (dd, J=7.8, 0.9 Hz, 1H), 7.64 (dd, J=8.1, 1.5 Hz, 1H), 7.36 (t, J=7.8 Hz, 1H), 5.22 (br. q, J=6.3 Hz, 1H), 2.41 (s, 3H), 1.91 (br. s, 1H), 1.48 (d, J=6.6 Hz) ppm.
Step C: 1-(1-Bromoethyl)-2-methyl-3-nitro-benzene (6c)
Following the General Procedure of Description 9, 1-(1-bromoethyl)-2-methyl-3-nitro-benzene (6c) was prepared from 1-(2-methyl-3-nitro-phenyl)ethanol (6b) (1.51 g, 8.35 mmol) and  ̃1.0 M hydrogen bromide in acetic acid (HBr/HOAc) (prepared from 33 wt-% HBr in HOAc (1.60 mL, 9.14 mmol) and glacial acetic acid (7.5 mL)). After aqueous work-up, 1.88 g (92% yield) of the title compound (6c) were obtained as a brown-colored viscous oil. The material was of sufficient purity to be used directly and without additional isolation and purification in the next step. Rf:  ̃0.64 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.79 (dd, J=8.1, 1.2 Hz, 1H), 7.67 (dd, J=8.1, 1.2 Hz, 1H), 7.37 (t, J=7.8 Hz, 1H), 5.41 (q, J=6.9 Hz, 1H), 2.48 (s, 3H), 2.09 (d, J=7.2 Hz, 3H) ppm.
Step D: 2-(2-Methyl-3-nitro-phenyl)propanenitrile (6d)
Following the General Procedure for the Preparation of Nitriles of Description 10, 2-(2-ethyl-3-nitro-phenyl)propanenitrile (6d) was prepared from 1-(1-bromoethyl)-2-methyl-3-nitro-benzene (6c) and sodium cyanide (NaCN) (451 mg, 9.18 mmol) in anhydrous N,N-dimethylformamide (DMF) (25 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:4→1:3 v/v) afforded 1.04 g (72% yield) of the title compound (6d) as a yellow liquid. Rf:  ̃0.36 (ethyl acetate (EtOAc)/hexane=1:4 v/v). Rf:  ̃0.61 (ethyl acetate (EtOAc)/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 7.75 (d, J=2.4 Hz, 1H), 7.72 (d, J=3.0 Hz, 1H), 7.42 (t, J=7.8 Hz, 1H), 4.17 (q, J=7.5 Hz, 1H), 2.45 (s, 3H), 1.66 (d, J=7.5 Hz, 3H) ppm.
Step E: Ethyl 3-cyano-3-(2-methyl-3-nitro-phenyl)butanoate (6e)
Following the General Procedure of Description 11 (Variant A), ethyl 3-cyano-3-(2-methyl-3-nitro-phenyl)butanoate (6e) was prepared from 2-(2-ethyl-3-nitro-phenyl)propanenitrile (6d) (761 mg, 4.00 mmol) by deprotonation with a commercial solution of lithium diisopropylamide (LDA) (1.8 M in heptane/THF/ethylbenzene) (2.56 mL, 4.60 mmol) and subsequent alkylation with commercial, neat ethyl 2-bromoacetate (BrCH2CO2Et) (885 μL, 1.34 g, 8.00 mmol; dried over 4 Å molecular sieves (4 Å MS) prior to use) in anhydrous tetrahydrofuran (THF) (freshly distilled over sodium benzophenone ketyl radical) (20 mL). Purification by silica gel column chromatography using an ethyl acetate (EtOAc)/hexane mixture (EtOAc/hexane=1:4 v/v→1:3 v/v) afforded 562 mg (75% yield based on recovered starting material) of the title compound (6e) a yellow oil. Rf:  ̃0.43 (ethyl acetate (EtOAc)/hexane=1:2 v/v). Rf:  ̃0.18 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.65 (dd, J=8.1, 1.2 Hz, 1H, superimposed), 7.56 (dd, J=8.1, 1.2 Hz, 1H, superimposed), 7.37 (t, J=8.4 Hz, 1H), 4.10 (q, J=6.9 Hz, 2H), 3.11 (d, J=15.6 Hz, 1H), 3.00 (d, J=15.6 Hz, 1H), 2.69 (s, 3H), 2.02 (s, 3H), 1.17 (t, J=7.2 Hz, 3H) ppm.
Step F: 4-(3-Amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (6f)
Following the General Procedure of Description 4, 4-(3-amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (6f) was prepared from ethyl 3-cyano-3-(2-methyl-3-nitro-phenyl)butanoate (6e) (562 mg, 2.03 mmol), freshly washed active Raney®-3202 nickel (about 10 mL of slurry) in ethanol (EtOH) (80 mL) using a Parr hydrogenation apparatus under about 60 psi hydrogen pressure. 1H NMR analysis (300 MHz, CDCl3) and TLC analysis showed that the reaction mixture consisted of a mixture of completely reduced non-cyclized starting material ethyl 4-amino-3-(3-amino-2-methyl-phenyl)-3-methyl-butanoate (6f) and the title compound 4-(3-amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (6f). A concentrated filtration alcoholic solution (about 20 mL) of the crude reaction mixture was stirred for about 2 hours at about 60° C. to 80° C. to facilitate lactamization of non-cyclized reduction product (6f′) to the title compound (6f) together with slow evaporation of residual solvent. The material thus obtained was further purified by silica gel column chromatography using dichloromethane (DCM) and methanol (MeOH) mixtures (DCM/MeOH=96:4 v/v) as eluents to afford 221 mg (53% yield) of the target compound (6f) as a colorless solid. Rf:  ̃0.68 (DCM/MeOH=9:1 v/v). Rf:  ̃0.23 (DCM/MeOH=95:5 v/v). 1H NMR (300 MHz, CDCl3): δ 7.01 (t, J=6.6 Hz, 1H), 6.64 (dd, J=7.5, 0.6 Hz, 1H), 6.57 (dd, J=7.8, 0.6 Hz, 1H), 6.30-6.20 (br. m, 1H), 3.77 (br. d, J=9.3 Hz, 1H), 3.64 (br. s, 2H, superimposed), 3.61 (br. dd, J=9.3, 1.5 Hz, 1H, superimposed), 2.86 (d, J=16.2 Hz, 1H), 2.58 (d, J=16.2 Hz, 1H), 2.14 (s, 3H), 1.53 (s, 3H) ppm. MS (ESI+): m/z=205.20 (M+H+)+, 409.3 (2M+H+)+.
Step G: 4-[3-[Bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (6g)
Following the General Procedure of Description 17 (Variant A), 4-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (6g) was prepared from 4-(3-amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (6f) (221 mg, 1.08 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (695 μL, 5.48 mmol), and sodium cyanoborohydride (NaBH3CN) (275 mg, 4.38 mmol) in a mixture of methanol (MeOH) (4.0 mL) and trifluoroacetic acid (TFA) (2.0 mL). Aqueous work afforded  ̃455 mg ( ̃quantitative yield) of crude material (6g) as a colorless viscous oil which was of sufficient purity (only residual ethyl acetate (EtOAc) and dichloromethane (DCM)) to be used directly and without further purification and isolation procedures in the next step. Rf:  ̃0.31 (EtOAc). Rf:  ̃0.33 (DCM)/MeOH=95:5 v/v). 1H NMR (300 MHz, CDCl3): δ 7.16 (t, J=7.8 Hz, 1H, superimposed), 7.09 (dd, J=8.1, 1.5 Hz, 1H), 6.88 (dd, J=7.8, 1.5 Hz, 1H), 6.46-6.38 (br. m, 1H), 3.78 (br. d, J=9.9 Hz, 1H), 3.68 (br. dd, J=8.4, 1.2 Hz, 1H), 3.50-3.34, m, 8H), 2.86 (d, J=16.2 Hz, 1H), 2.63 (d, J=16.2 Hz, 1H), 2.36 (s, 3H), 1.46 (s, 3H) ppm. MS (ESI+): m/z=329.15 (M+H+)+.
Step H: 4-Amino-3-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (6)
Following the General Procedure of Description 22, 4-amino-3-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (6) was prepared from 4-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (6g) ( ̃355 mg,  ̃1.08 mmol) by hydrolysis in concentrated hydrochloric acid (HCl) (about 15 mL) at reflux temperature for about 24 hours to afford a mixture containing the title compound (6) (minor) as a dihydrochloride salt and the starting material (6g) (major) as a hydrochloride salt after isolation using evaporation and lyophilization. The material thus obtained was purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 25 mg of the title compound (6) as a slightly brown dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and/or in vivo evaluation. LC/UV (from LC/MS): Rt=1.28 min. Purity 98.4% by AUC at λ=254 nm. MS (ESI+): m/z=347.15 (M+H+)+. (ESI−): m/z=345.05 (M−H+)−, 693.30 (2M−H+)−.
Example 7
4-Amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7)
Method A







Step A: 2-Methyl-4-nitro-phenyl)methanol (7a)
Following the General Procedure of Description 6, 2-methyl-4-nitro-phenyl)methanol (7a) was prepared from commercial 2-methyl-4-nitro benzoic acid (5.0 g, 27.6 mmol) with borane dimethylsulfide complex (2.0 M BH3.SMe2 in THF) (27.6 mL, 55.2 mmol) in anhydrous tetrahydrofuran (100 mL) to yield 4.62 g (quantitative yield) of the target compound (7a) as a pale yellow solid, which was of sufficient purity to be used directly in the next step without further isolation and purification. Rf:  ̃0.50 (EtOAc/Hxn=1:1 v/v). 1H NMR (300 MHz, CDCl3): δ 8.07 (dd, J=8.4, 2.1 Hz, 1H), 8.02 (d, J=2.1 Hz, 1H), 7.62 (d, J=8.1 Hz, 1H), 4.79 (s, 2H), 2.38 (s, 3H), 1.87 (br. s, 1H) ppm.
Step B: 2-Methyl-4-nitro-benzaldehyde (7b)
Following the General Procedure of Description 7 (Variant A), 2-methyl-4-nitro-benzaldehyde (7b) was prepared from 2-methyl-4-nitro-phenyl)methanol (7a) (1.63 g, 9.72 mmol) in the presence of dimethylsulfoxide (DMSO) (5.68 mL, 6.25 g, 80.0 mmol), triethylamine (TEA, Et3N) (6.95 mL, 5.05 g, 50.0 mmol), and sulfur trioxide pyridine complex (SO3.pyridine) (4.78 g, 30.0 mmol) in anhydrous dichloromethane (60 mL). Aqueous work-up afforded 1.51 g (94% yield) of the target compound (7b) as a yellow solid. The material was of sufficient purity to be used directly in the next step without further isolation and purification procedures.
Following the General Procedure of Description 7 (Variant B), 2-methyl-4-nitro-benzaldehyde (7b) was prepared from 2-methyl-4-nitro-phenyl)methanol (7a) (8.4 g, 50.3 mmol) in the presence of manganese dioxide (MnO2) (48.1 g, 553 mmol). Work-up afforded 7.5 g (90% yield) of the target compound (7b) as a yellow solid. The material was of sufficient purity to be used directly in the next step without further isolation and purification procedures. Rf:  ̃0.58 (EtOAc/Hxn=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 10.39 (s, 1H), 8.20 (dd, J=8.4, 2.1 Hz, 1H), 8.14 (br. s, 1H), 7.98 (d, J=8.1 Hz, 1H), 2.79 (s, 3H) ppm. The compound is also commercially available.
Step C: 1-(2-Methyl-4-nitro-phenyl)ethanol (7c)
Following the General Procedure of Description 8, MeTiCl3 was freshly prepared prior to use from commercial titanium tetrachloride (TiCl4) (4.73 mL, 8.17 g, 43.1 mmol) and methyl lithium (MeLi) (1.6 M in Et2O, 26.9 mL, 43.0 mmol) in anhydrous diethyl ether (Et2O) (230 mL). A solution of 2-methyl-4-nitro-benzaldehyde (7b) (7.11 g, 43.0 mmol) in anhydrous Et2O (200 mL) was added. Aqueous work-up afforded 7.0 g (90% yield) of the target compound (7c) as a yellow solid. The material was of sufficient purity to be used directly in the next step without further isolation and purification procedures. Rf:  ̃0.24 (EtOAc/Hxn=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 8.07 (dd, J=8.7, 2.7 Hz, 1H), 7.99 (d, J=2.4 Hz, 1H), 7.72 (d, J=9.0 Hz, 1H), 5.18 (q, J=6.6 Hz, 1H), 2.42, (s, 3H), 1.92-1.88 (br. m, 1H), 1.47 (d, J=6.3 Hz, 3H) ppm.
Step D: 1-(1-Bromoethyl)-2-methyl-4-nitro-benzene (7d)
Following the General Procedure of Description 9, 1-(1-bromoethyl)-2-methyl-4-nitro-benzene (7d) was prepared from 1-(2-methyl-4-nitro-phenyl)ethanol (7c) (7.05 g, 38.9 mmol) and  ̃1.0 M hydrogen bromide in acetic acid (HBr/HOAc) (prepared from 33 wt-% HBr in HOAc (7.5 mL, 42.8 mmol) and glacial acetic acid (35.0 mL)). After aqueous work-up, 9.0 g (95% yield) of the title compound (7d) were obtained as a brown-colored viscous oil. The material was of sufficient purity to be used directly and without additional isolation and purification in the next step. Rf:  ̃0.67 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.08 (dd, J=8.7, 2.1 Hz, 1H), 8.03 (d, J=2.1 Hz, 1H), 7.70 (d, J=8.7 Hz, 1H), 5.35 (q, J=6.9 Hz, 1H), 2.51 (s, 3H), 2.09 (d, J=6.9 Hz) ppm.
Step E: 2-(2-Methyl-4-nitro-phenyl)propanenitrile (7e)
Following the General Procedure of Description 10, 2-(2-methyl-4-nitro-phenyl)propanenitrile (7e) was prepared from 1-(1-bromoethyl)-2-methyl-4-nitro-benzene (7d) (9.0 g, 36.9 mmol) and sodium cyanide (NaCN) (2.2 g, 44.3 mmol) in anhydrous N,N-dimethylformamide (DMF) (70 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:3 v/v→1:2 v/v) afforded 5.0 g (71% yield) of the title compound (7e) as a brown oil. Rf:  ̃0.45 (EtOAc/hexane=1:2 v/v). Rf:  ̃0.29 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.13 (dd, J=8.4, 2.4 Hz, 1H), 8.08 (d, J=2.7 Hz, 1H), 7.65 (d, J=8.1 Hz, 1H), 4.12 (q, J=7.5 Hz, 1H), 2.48 (s, 3H), 1.65 (d, J=7.2 Hz) ppm.
Step F: Ethyl 3-cyano-3-(2-methyl-4-nitro-phenyl)butanoate (7f)
Following the General Procedure of Description 11 (Variant A), ethyl 3-cyano-3-(2-methyl-4-nitro-phenyl)butanoate (7f) was prepared from 2-(2-methyl-4-nitro-phenyl)propanenitrile (7e) (718 mg, 3.78 mmol) by deprotonation with a commercial solution of lithium diisopropylamide (LDA) (1.8 M in heptane/THF/ethylbenzene) (2.50 mL, 4.50 mmol) and subsequent alkylation with commercial, neat ethyl 2-bromoacetate (BrCH2CO2Et) (885 μL, 1.34 g, 8.00 mmol; dried over 4 Å molecular sieves (4 Å MS) prior to use) in anhydrous tetrahydrofuran (THF) (freshly distilled over sodium benzophenone ketyl radical) (18 mL). Purification by silica gel column chromatography using an ethyl acetate (EtOAc)/hexane mixture (EtOAc/hexane=1:4 v/v) afforded 798 mg of a mixture of the target compound (7f) and the starting material (7e) corresponding to 486 mg (47% yield based on recovered starting material) of the title compound (7f) a viscous yellow oil. Rf:  ̃0.50 (ethyl acetate (EtOAc)/hexane=1:2 v/v). Rf:  ̃0.21 (ethyl acetate (EtOAc)/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.08 (dd, J=8.4, 2.7 Hz, 1H), 8.04 (d, J=2.4 Hz, 1H), 7.53 (d, J=8.7 Hz, 1H), 4.11 (q, J=6.9 Hz, 2H), 3.14 (d, J=15.9 Hz, 1H), 3.03 (d, J=15.9 Hz, 1H), 2.77 (s, 3H), 1.98 (s, 3H), 1.17 (t, J=7.2 Hz, 3H) ppm.
Step G: 4-(4-Amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (7g)
Following the General Procedure of Description 4, 4-(4-amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (7g) was prepared from ethyl 3-cyano-3-(2-methyl-4-nitro-phenyl)butanoate (7f) (486 mg, 2.02 mmol), freshly washed active Raney®-3202 nickel (about 8.0 mL of slurry) in ethanol (EtOH) (80 mL) using a Parr hydrogenation apparatus under about 60 psi hydrogen pressure. 1H NMR analysis (300 MHz, CDCl3) and TLC analysis showed that the reaction mixture consisted of a mixture of completely reduced non-cyclized starting material ethyl 4-amino-3-(4-amino-2-methyl-phenyl)-3-methyl-butanoate (7g′) and the title compound 4-(4-amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (7g). A concentrated filtration alcoholic solution (about 20 mL) of the crude reaction mixture was stirred for about 2 hours at about 60-80° C. to facilitate lactamization of non-cyclized reduction product (7g′) (4-amino-3-(4-amino-2-methyl-phenyl)-3-methyl-butanoic acid) to the title compound (7g) together with slow evaporation of residual solvent. The material thus obtained was further purified by silica gel column chromatography using a dichloromethane (DCM) and methanol (MeOH) mixture (DCM/MeOH=95:5 v/v) as eluents to afford 224 mg (54% yield) of the target compound (7g) as a colorless solid. Rf:  ̃0.59 (DCM/MeOH=9:1 v/v). 1H NMR (300 MHz, CDCl3): δ 6.87-6.81 (m, 1H), 6.57-6.48 (m, superimposed signals, 2H), 6.11-6.05 (br. m, 1H), 3.72 (br. d, J=9.3 Hz, 1H), 3.59 (br. s, 2H, superimposed), 3.57 (br. dd, J=9.3, 1.5 Hz, 1H, superimposed), 2.81 (d, J=16.2 Hz, 1H), 2.52 (d, J=16.2 Hz, 1H), 2.28 (s, 3H), 1.45 (s, 3H) ppm. MS (ESI+): m/z=205.20 (M+H+)+, 409.3 (2M+H+)+.
Step H: 4-[4-[Bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (7h)
Following the General Procedure of Description 17 (Variant A), 4-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (7h) was prepared from 4-(4-amino-2-methyl-phenyl)-4-methyl-pyrrolidin-2-one (7g) (224 mg, 1.10 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (695 μL, 5.48 mmol), and sodium cyanoborohydride (NaBH3CN) (275 mg, 4.38 mmol) in a mixture of methanol (MeOH) (4.0 mL) and trifluoroacetic acid (TFA) (2.0 mL). Aqueous work afforded  ̃393 mg ( ̃quantitative yield) of crude material (7h) as a colorless viscous oil which was of sufficient purity (only residual ethyl acetate (EtOAc) and dichloromethane (DCM)) to be used directly and without further purification and isolation procedures in the next step. Rf:  ̃0.22 (EtOAc). Rf:  ̃0.63 (DCM)/MeOH)=9:1 v/v). 1H NMR (300 MHz, CDCl3): δ 6.94 (d, J=8.7 Hz, 1H), 6.50 (dd, J=8.7, 3.0 Hz, 1H), 6.45 (d, J=2.7 Hz, 1H), 6.17 (br. m, 1H), 3.76-3.56 (br. m, 10H), 2.82 (d, J=16.2 Hz, 1H), 2.54 (d, J=16.2 Hz, 1H), 2.34 (s, 3H), 1.46 (s, 3H) ppm. MS (ESI+): m/z=329.15 (M+H+)+.
Step I: 4-Amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7)
Following the General Procedure of Description 22, 4-amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7) was prepared from 4-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-methyl-pyrrolidin-2-one (7h) ( ̃361 mg, 1.10 mmol) by hydrolysis in concentrated hydrochloric acid (HCl) (about 15 mL) at reflux temperature for about 24 hours to yield the target compound (7) as a dihydrochloride salt and the starting material (7h) (major) as a hydrochloride salt after isolation using evaporation and lyophilization. Part of the material thus obtained was purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford 98 mg of the title compound (7) as a colorless foamy dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and/or in vivo evaluation. LC/UV (of LC/MS): Rt=0.89 min.>99% purity by AUC at λ=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.23 (d, J=9.3 Hz, 1H), 6.72-6.64 (m, 2H), 3.84-3.74 (br. m, 4H), 3.70-3.62 (br. m, 4H), 3.56 (d, J=13.2 Hz, 1H), 3.36 (d, J=13.2 Hz, 1H), 2.89 (s, 2H), 2.53 (s, 3H), 1.67 (s, 3H) ppm. MS (ESI+): m/z=347.10 (M+H+)+. (ESI−): m/z=345.05 (M−H+)−, 693.30 (2M−H+)−.
Method B







Step J: tert-Butyl 3-cyano-3-(2-methyl-4-nitro-phenyl)butanoate (7j)
Following the General Procedure of Description 11 (Variant B), tert-butyl 3-cyano-3-(2-methyl-4-nitro-phenyl)butanoate (7j) was prepared from 2-(2-methyl-4-nitro-phenyl)propanenitrile (7e) (prepared from commercial 2-methyl-4-nitro benzoic acid as described in steps a)-e) for Method A) (2.18 g, 11.44 mmol) by deprotonation with sodium hydride (504 mg of a 60 wt-% suspension in mineral oil, 302 mg, 12.6 mmol) in a mixture of dimethylsulfoxide (DMSO) (28 mL) and diethylether (Et2O) (41 mL) and subsequent alkylation with commercial, neat tert-butyl 2-bromoacetate (BrCH2CO2tBu) (3.38 mL, 4.46 g, 22.89 mmol). Purification by silica gel column chromatography using an ethyl acetate (EtOAc)/hexane mixture (EtOAc/hexane=1:5 v/v) afforded 3.48 g (99%) yield) of the title compound (7j) as a viscous yellow oil. Rf:  ̃0.42 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 8.09 (d, J=2.1 Hz, 1H), 8.05 (dd, J=9.0, 3.0 Hz, 1H), 7.53 (d, J=8.4 Hz, 1H), 3.05 (d, J=15.3 Hz, 1H), 2.95 (d, J=15.3 Hz, 1H), 2.77 (s, 3H), 1.95 (s, 3H), 1.33 (s, 9H) ppm.
Step K: tert-Butyl 3-(4-amino-2-methyl-phenyl)-3-cyano-butanoate (7k)
Following the General Procedure of Description 12, tert-butyl 3-(4-amino-2-methyl-phenyl)-3-cyano-butanoate (7k) was prepared by reduction of tert-butyl 3-cyano-3-(2-methyl-4-nitro-phenyl)butanoate (7j) (3.51 g, 11.54 mmol) with nickel acetate tetrahydrate (Ni(OAc)2.4H2O) (574 mg, 2.31 mmol) and sodium borohydride (NaBH4) (1.75 g, 46.1 mmol) in a mixture of acetonitrile (MeCN) (30 mL) and water (3 mL). Aqueous work-up afforded 3.23 g ( ̃quantitative yield) of the target compound (7k) as pale yellow oil. The material contained some residual organic solvent but was of sufficient purity to be used directly and without further isolation or purification procedures in the next step. Rf:  ̃0.40 (EtOAc/hexane=1:2 v/v). Rf:  ̃0.14 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.08 (d, J=8.4 Hz, 1H), 6.53 (d, J=2.4 Hz, 1H), 6.49 (dd, J=8.4, 2.4 Hz, 1H), 3.64 (br. s, 2H), 2.94 (d, J=15.0 Hz, 1H), 2.78 (d, J=15.0 Hz, 1H), 2.54 (s, 3H), 1.88 (s, 3H), 1.35 (s, 9H) ppm. MS (ESI+): m/z=275.25 (M+H+)+. (549.35 (2M+H+)+.
Step L: tert-Butyl 3-(4-benzyloxycarbonylamino-2-methyl-phenyl)-3-cyano-butanoate (71)
Following the General Procedure of Description 13, tert-butyl 3-(4-benzyloxycarbonylamino-2-methyl-phenyl)-3-cyano-butanoate (7l) was prepared from tert-butyl 3-(4-amino-2-methyl-phenyl)-3-cyano-butanoate (7k) (3.32 g, 12.1 mmol), and CbzCl) (2.0 mL, 2.27 g (2.34 g of 95 wt-% purity material), 13.31 mmol), and freshly powdered sodium hydrogencarbonate (NaHCO3) (1.12 g, 13.31 mmol) in tetrahydrofuran (THF) (75 mL). Purification by silica gel column chromatography using an ethyl acetate (EtOAc)/hexane mixture (EtOAc/hexane=1:4 v/v) afforded 3.86 g (78% yield) of the title compound (71) as a viscous yellow oil. Rf:  ̃0.41 (EtOAc/hexane=1:4 v/v). Rf:  ̃0.66 (EtOAc/hexane=1:2 v/v). 1H NMR (300 MHz, CDCl3): δ 7.42-7.32 (m, 5H), 7.26-7.22 (m, 3H), 6.69 (br. s, 1H), 5.18 (s, 2H), 2.94 (d, J=15.0 Hz, 1H), 2.97 (d, J=14.7 Hz, 1H), 2.83 (d, J=15.0 Hz, 1H), 2.61 (s, 3H), 1.90 (s, 3H), 1.34 (s, 9H) ppm. MS (ESI+): m/z=431.15 (M+H+)+, 549.35 (2M+H+)+.
Step M: tert-Butyl 3-(4-benzyloxycarbonylamino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7m)
Following the General Procedure of Description 14, tert-butyl 3-(4-benzyloxycarbonylamino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7m) was prepared by reduction of tert-butyl 3-(4-benzyloxycarbonylamino-2-methyl-phenyl)-3-cyano-butanoate (71) (3.59 g, 8.88 mmol) with nickel(II) chloride hexahydrate (NiCl2.6H2O) (1.04 g, 4.39 mmol) and sodium borohydride (NaBH4) (2.50 g, 66.0 mmol) in the presence of di-tert-butyl-dicarbonate (Boc-anhydride, Boc2O) (3.88 g, 17.76 mmol) in methanol (MeOH) (80 mL). Aqueous work-up followed by purification by silica gel column chromatography using ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:5 v/v→1:1 v/v→3:1 v/v) afforded 1.82 g (40%) yield) of the title compound (7m) as a colorless solid. Rf:  ̃0.36 (EtOAc/hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.44-7.30 (m, 5H), 7.24-7.10 (m, 3H), 6.60 (br. s, 1H), 5.19 (s, 2H), 4.56-4.42 (br. m, 1H), 3.60 (dd, J=13.8, 7.8 Hz, 1H), 3.44 (dd, J=13.8, 4.5 Hz, 1H), 2.89 (d, J=13.8 Hz, 1H), 2.54 (s, 3H), 2.50 (d, J=14.1 Hz, 1H), 1.54 (s, 3H), 1.40 (s, 9H), 1.19 (s, 9H) ppm. MS (ESI+): m/z=535.25 (M+Na+)+.
Step N: tert-Butyl 3-(4-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7n)
Following the General Procedure of Description 16, tert-butyl 3-(4-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7n) was prepared by hydrogenolysis of tert-butyl 3-(4-benzyloxycarbonylamino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7m) (1.83 g, 3.56 mmol) in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water (0.75 g) in a mixture of methanol (MeOH) (30 mL) and ethyl acetate (EtOAc) (30 mL) and under an atmosphere of hydrogen ( ̃15 psi, H2-balloon). Purification by silica gel column chromatography using ethyl acetate (EtOAc)/hexane mixtures (EtOAc/hexane=1:3 v/v→1:2 v/v) afforded 980 mg (73%) yield) of the title compound (7n) as a colorless very viscous oil. Rf:  ̃0.14 (EtOAc/hexane=1:4 v/v). Rf:  ̃0.35 (EtOAc/hexane=1:2 v/v). NMR (300 MHz, CDCl3): δ 7.04 (d, J=8.4 Hz, 1H), 6.50-6.42 (m, 2H), 4.56-4.44 (br. m, 1H), 3.58 (dd, J=13.8, 8.1 Hz, 1H, partially superimposed), 3.54 (br. s, 2H, partially superimposed), 3.42 (dd, J=13.5, 4.5 Hz, 1H), 2.85 (d, J=13.5 Hz, 1H), 2.47 (d, J=13.8 Hz, 1H, partially superimposed), 2.47 (s, 3H, partially superimposed), 1.51 (s, 3H), 1.40 (s, 9H) 1.21 (s, 9H) ppm. MS (ESI+): m/z=379.25 (M+H+)+, 401.20 (M+Na+)+.
Step O: tert-Butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o)
Following the General Procedure of Description 17 (Variant B), tert-butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o) was prepared from tert-butyl 3-(4-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7n) (962 mg, 2.54 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.6 mL, 12.7 mmol), and sodium cyanoborohydride (NaBH3CN) (638 mg, 10.2 mmol) in a mixture of methanol (MeOH) (15 mL) and acetic acid (HOAc) (7.7 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:6 v/v) afforded 941 mg (74% yield) of the title compound (7o) as an almost colorless viscous oil.
Following the General Procedure of Description 17 (Variant C), tert-butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o) was prepared from tert-butyl 3-(4-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7n) (855 mg, 2.26 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (3.0 mL, 23.6 mmol), and sodium cyanoborohydride (NaBH3CN) (1.14 g, 18.2 mmol) in a mixture of methanol (MeOH) (14 mL) and 85 wt-% phosphoric acid (H3PO4) (7 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane (EtOAc/hexane=1:6 v/v) afforded 706 mg (74% yield) of the title compound (7o) as an almost colorless viscous oil. Rf:  ̃0.47 (EtOAc/Hexane=1:4 v/v). 1H NMR (300 MHz, CDCl3): δ 7.14 (d, J=9.0 Hz, 1H), 6.50-6.40 (m, 2H), 4.60-4.5 (br. m, 1H), 3.76-3.66 (m, 4H), 3.66-3.54 (m, 5H), 3.44 (dd, J=13.8, 4.8 Hz, 1H), 2.85 (d, J=13.8 Hz, 1H), 2.54 (s, 3H), 2.49 (d, J=14.1 Hz, 1H), 1.52 (s, 3H), 1.41 (s, 9H), 1.20 (s, 9H) ppm. MS (ESI+): m/z=503.20 (M+H+)+, 525.20 (M+Na+)+.
Step P: 4-Amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7)
Following the General Procedure of Description 23 (Variant B), 4-amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7) was prepared from tert-butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o) (161 mg, 0.32 mmol) in 2 N HCl in diethyl ether (2 N HCl in Et2O) (6 mL, 12 mmol) to yield 114 mg (83% recovery) of the target compound (7) as an off-white powdery solid dihydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material was of sufficient purity to be used directly and without further isolation and purification procedures in in vitro and/or in vivo evaluation. LC/UV: Rt=7.57 min. 98.2% purity by AUC at λ=254 nm. 1H NMR (300 MHz, CD3OD): δ 7.25 (d, J=9.6 Hz, 1H), 6.80-6.68 (m, 2H), 3.85-3.77 (br. m, 4H), 3.70-3.63 (br. m, 4H), 3.57 (d, J=13.2 Hz, 1H), 3.36 (d, J=13.2 Hz, 1H), 2.89 (s, 2H), 2.54 (s, 3H), 1.66 (s, 3H) ppm. MS (ESI+): m/z=347.10 (M+H+)+. (ESI−): m/z=345.05 (M−H+), 693.30 (2M−H+)−.
Following the General Procedure of Description 23 (Variant A), 4-amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7) was prepared from tert-butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o) (1.07 g, 2.11 mmol) in a mixture of dichloromethane (DCM) (24 mL) and trifluoroacetic acid (TFA) (12 mL) to yield 1.60 g of the target compound (7) as a red oily di-trifluoroacetate salt after evaporation of solvents and final lyophilization from an aqueous solution. LC/UV (from LC/MS): Rt=1.01 min. 95.7% purity by AUC at λ=254 nm. 1H NMR (300 MHz, CDCl3): δ 7.05 (d, J=8.7 Hz, 1H), 6.62-6.55 (m, 2H), 3.80-3.68 (br. m, 4H), 3.66-3.56 (br. m, 4H), 3.25 (d, J=16.8 Hz, 1H), 2.81 (d, J=16.5 Hz, 1H), 2.47 (s, 3H), 2.10 (s, 2H), 1.57 (s, 3H) ppm. MS (ESI+): m/z=347.10 (M+H+)+. The di-trifluoroacetate salt of the target compound (7) ( ̃195 mg,  ̃0.34 mmol) material was partially converted to the dihydrochloride salt of (7) by repeated precipitation with 2 N HCl in Et2O (2×4 mL, 2×8.0 mmol) followed by washing of the precipitate with anhydrous Et2O (3×4 mL) to yield 98 mg (69% recovery) of the target compound (7) as an off-white powdery solid dihydrochloride salt after final lyophilization from an 50 vol-% aqueous acetonitrile solution.
Example 8
4-Amino-3-[5-[bis(2-chloroethyl)carbamoyl]-2-methyl-phenyl]butanoic acid (8)







Step A: Methyl 3-[(E)-3-tert-butoxy-3-oxo-prop-1-enyl]-4-methyl-benzoate (8a)
Following the General Procedure of Description 2 (Variant A), methyl 3-[(E)-3-tert-butoxy-3-oxo-prop-1-enyl]-4-methyl-benzoate (8a) is prepared from known methyl 3-formyl-4-methyl-benzoate (3.56 g, 20.0 mmol), commercial tert-butyl diethyl phosphonoacetate (5.87 mL, 6.31 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (20 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane furnishes the title compound (8a).
Step B: Methyl 3-[3-tert-butoxy-1-(nitromethyl)-3-oxo-propyl]-4-methyl-benzoate (8b)
Following the General Procedure of Description 3, methyl 3-[3-tert-butoxy-1-(nitromethyl)-3-oxo-propyl]-4-methyl-benzoate (8b) is prepared from methyl 3-[(E)-3-tert-butoxy-3-oxo-prop-1-enyl]-4-methyl-benzoate (8a) (4.14 g, 15.0 mmol) in a mixture of acetonitrile (MeCN) (40 mL) and nitromethane (MeNO2) (8.2 mL, 9.3 g, 151 mmol) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.27 mL, 2.31 g, 15.2 mmol). Purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane furnishes the title compound (8b).
Step C: Methyl 3-[1-(aminomethyl)-3-tert-butoxy-3-oxo-propyl]-4-methyl-benzoate (8c)
Following the General Procedure of Description 16, methyl 3-[1-(aminomethyl)-3-tert-butoxy-3-oxo-propyl]-4-methyl-benzoate (8c) is prepared by global reduction of methyl 3-[3-tert-butoxy-1-(nitromethyl)-3-oxo-propyl]-4-methyl-benzoate (8b) (3.37 g, 10.0 mmol) in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water ( ̃1.5 g) in methanol (MeOH) (40 mL) and under an atmosphere of hydrogen ( ̃15 psi, H2-balloon). The crude material after filtration may be used directly and without further isolation in the next step or may be purified by preparative HPLC to afford the title compound (8c).
Step D: Methyl 3-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-3-oxo-propyl]-4-methyl-benzoate (8d)
Following the General Procedure of Description 15, methyl 3-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-3-oxo-propyl]-4-methyl-benzoate (8d) is prepared from methyl 3-[1-(aminomethyl)-3-tert-butoxy-3-oxo-propyl]-4-methyl-benzoate (8c) (3.07 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (8d).
Step E: 3-[3-tert-Butoxy-1-[(tert-butoxycarbonylamino)methyl]-3-oxo-propyl]-4-methyl-benzoic acid (8e)
Adapting a literature known protocol (Dayal, et al., Steroids, 1990, 55(5), 233-237), a reaction mixture of methyl 3-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-3-oxo-propyl]-4-methyl-benzoate (8d) (4.08 g, 10.0 mmol) and commercial lithium hydroxide monohydrate (LiOH.H2O) in a mixture of water (20 mL) and methanol (MeOH) (5 mL) is stirred at room temperature. The reaction is monitored by TLC and/or LC/MS to completion. The solvent is partially removed under reduced pressure using a rotary evaporator. The pH of the residue is adjusted to  ̃1-2 with a 1.0M hydrochloric acid (HCl). The aqueous phase is extracted with ethyl acetate (4×) and the combined organic extracts are washed with and brine, dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents removed under reduced pressure using a rotary evaporator to yield the target compound 3-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-3-oxo-propyl]-4-methyl-benzoic acid (8e), which can be used directly in the next step.
Step F: tert-Butyl 3-[5-[bis(2-chloroethyl)carbamoyl]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (8f)
Adapting a literature known protocol (U.S. Pat. No. 3,235,594), to a reaction mixture of 3-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-3-oxo-propyl]-4-methyl-benzoic acid (8e) (787 mg, 2.0 mmol), N-hydroxysuccinimide (NHS, HOSu) (235 mg, 2.2 mmol) in anhydrous acetonitrile (MeCN) (10 mL) is added solid dicyclohexylcarbodiimide (DCC) (433 mg, 2.1 mmol) in small portions at about room temperature. The reaction mixture is stirred for about 12 hours and the precipitated dicyclohexylurea side product is filtered off using a Büchner funnel. The filtrate is treated with commercial di-(2-chloroethyl)amine hydrochloride (2-chloro-N-(2-chloroethyl)ethanamine hydrochloride; HN(CH2—CH2—Cl)2.HCl) (393 mg, 2.2 mmol) followed by neat triethylamine (Et3N, TEA) (321 μL, 233 mg, 2.3 mmol). The reaction mixture is stirred for about 12 hours at room temperature. The reaction is followed by TLC and/or LC/MS to completion. The volatile solvents are removed under reduced pressure using a rotary evaporator. The residue is diluted with 1.0M hydrochloric acid (HCl). The aqueous phase is extracted with ethyl acetate (EtOAc) and the combined organic extracts are washed with brine, dried over anhydrous magnesium sulfate (MgSO4), filtered, and evaporated to dryness. Purification by silica gel column chromatography using EtOAc and hexane mixtures furnishes the target compound (8f).
Step G: 4-Amino-3-[5-[bis(2-chloroethyl)carbamoyl]-2-methyl-phenyl]butanoic acid (8)
Following the General Procedure of Description 23 (Variant B), 4-amino-3-[5-[bis(2-chloroethyl)carbamoyl]-2-methyl-phenyl]butanoic acid (8) is prepared from tert-butyl 3-[5-[bis(2-chloroethyl)carbamoyl]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-butanoate (8f) (518 mg, 1.0 mmol) in 2.0 N HCl in diethyl ether (2.0 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (8) as a solid hydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material may be further purified by preparative HPLC followed by lyophilization. Optionally, the lyophilization is conducted in the presence of 1 equivalent of 1.0 M hydrochloric acid (HCl).
Example 9
4-Amino-3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (9)







Step A: Tert-Butyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (9a)
Following the General Procedure of Description 2 (Variant A), tert-butyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (9a) is prepared from commercial 2-methyl-5-nitro-benzaldehyde (5j) (for a synthesis of (5j) see also Example 5, Method B) (3.30 g, 20.0 mmol), commercial tert-butyl diethyl phosphonoacetate (5.87 mL, 6.31 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (30 mL). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (9a).
Step B: tert-Butyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (9b)
Following the General Procedure of Description 3, tert-butyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (9b) is prepared from tert-butyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (9a) (3.95 g, 15.0 mmol) in a mixture of nitromethane (MeNO2) (10 mL, 11.4 g, 187 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.24 mL, 2.28 g, 15.3 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (9b).
Step C: tert-Butyl 4-amino-3-(5-amino-2-methyl-phenyl)butanoate (9c)
Following the General Procedure of Description 16, tert-butyl 4-amino-3-(5-amino-2-methyl-phenyl)butanoate (9c) is prepared by global reduction of tert-butyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (9b) (3.24 g, 10.0 mmol) in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water ( ̃1.5 g) in methanol (MeOH) (40 mL) and under an atmosphere of hydrogen ( ̃15 psi, H2-balloon). The crude material, after filtration over Celite®545, may be used directly and without further isolation in the next step or may be purified by preparative HPLC to afford the title compound (9c).
Step D: tert-Butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)butanoate (9d)
Following the General Procedure of Description 15, tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)butanoate (9d) is prepared from tert-butyl 4-amino-3-(5-amino-2-methyl-phenyl)butanoate (9c) (2.64 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (9d).
Step E: tert-Butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9e)
Variant A:
Following General Procedure of Description 18, tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9e) is prepared from tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)butanoate (9d) (3.65 g, 10.0 mmol) through reaction with ethylene oxide (12.5 mL, 11.0 g, 100.0 mmol) in 15 mL of 50 vol.-% aqueous acetic acid (HOAc) for 24 hours at room temperature to yield the title compound (9e) after aqueous work-up and purification by silica gel chromatography.
Variant B:
Adapting literature known protocols (Palmer, et al., J. Med. Chem. 1990, 33(1), 112-121; Coggiola, et al., Bioorg. Med. Chem. Lett., 2005, 15(15), 3551-3554; Verny et al., Cmpds Radiopharm., 1988, 25(9), 949-955; and Lin, Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943), a reaction mixture of tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)butanoate (9d) (3.65 g, 10.0 mmol) and commercial 2-chloroethanol (2.68 mL, 3.22 g, 40.0 mmol) or commercial 2-bromoethanol (2.84 mL, 5.0 g, 40.0 mmol), calcium carbonate (CaCO3) (2.0 g, 20.0 mmol, 2.0 equivalents) in water (about 35 mL), and a catalytic amount of potassium iodide (KI) (166 mg, 1.0 mmol, 10 mol-%) is heated at reflux for about 12-24 hours. The reaction is followed by TLC and/or LC/MS to completion. Additional amounts of 2-halogeno ethanol and CaCO3 may be added and the reaction times may be extended an additional 8-24 h for completion. The pH of the reaction mixture is adjusted to  ̃7 with a 2.5 M (10 wt-%) aqueous solution of sodium hydroxide (NaOH). The aqueous phase is extracted with ethyl acetate (4×) and the combined organic extracts are washed with 1.0 M hydrochloric acid, a saturated aqueous solution of sodium hydrogen carbonate (NaHCO3), and brine, dried over anhydrous magnesium sulfate (MgSO4), filtered, and the solvents removed under reduced pressure using a rotary evaporator to yield the target compound tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9e). The crude residue may be further purified by silica gel column chromatography using EtOAc, methanol (MeOH), dichloromethane (DCM), and hexanes, or mixtures of any of the foregoing to furnish the purified target compound.
Step F: tert-Butyl 3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f)
Following the General Procedure of Description 20 (Variant A), tert-butyl 3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f) is prepared from tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9e) (2.26 g, 5.0 mmol) and methanesulfonyl anhydride (Ms2O) (3.48 g, 20.0 mmol) in the presence of triethylamine (TEA, Et3N) (3.48 mL, 2.54 g, 25.0 mmol) and 4-N,N-(dimethylamino)pyridine (DMAP) (122 mg, 1.0 mmol, 20 mol-%) in anhydrous dichloromethane (DCM) (30 mL) to yield the target compound (9f) after aqueous work-up and purification by silica gel column chromatography.
Variant B:
Following the General Procedure of Description 20 (Variant B), tert-butyl 3-[5-(bis(2-methyl sulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f) is prepared from tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9e) (2.26 g, 5.0 mmol) and methanesulfonyl chloride (MsCl) (0.96 mL, 1.44 g, 12.5 mmol) in the presence of triethylamine (TEA, Et3N) (2.10 mL, 1.52 g, 15.0 mmol) or pyridine (4.0 mL, 3.96 g, 50.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) to yield the target compound (9f) after aqueous work-up and purification by silica gel column chromatography.
Step G: 4-Amino-3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (9)
Following the General Procedure of Description 23 (Variant B), 4-amino-3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (9) is prepared from tert-butyl 3-[5-(bis(2-methyl sulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-butanoate (9f) (453 mg, 1.0 mmol) in 2 N HCl in diethyl ether (2 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (9) as a solid dihydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material may be further purified by preparative HPLC followed by lyophilization. Optionally, the lyophilization is conducted in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 10
4-Amino-3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]butanoic Acid (10)




Step A: tert-Butyl 3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (10a)
Following the General Procedure of Description 21, tert-butyl 3-[5-[bis(2-bromoethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (10a) is prepared from (tert-butyl 3-[5-(bis(2-methyl sulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f) (1.22 g, 2.0 mmol) through reaction with lithium bromide (LiBr) (1.74 g, 20.0 mmol) in tetrahydrofuran (THF) (10 mL) at reflux temperature for about 6 hours to yield the title compound (10a) after aqueous work-up and purification by silica gel column chromatography.
Step B: 4-Amino-3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]butanoic acid (10)
Following the General Procedure of Description 23 (Variant A) 4-amino-3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]butanoic acid (10) is prepared from tert-butyl 3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (10a) (578 mg, 1.0 mmol) through deprotection in a trifluoroacetic acid (TFA)/dichloromethane (DCM) mixture (TFA/DCM=1:1 v/v, 10 mL) at room temperature for about 6 hours to yield the target compound (10) as a ditrifluoroacetate salt after evaporation and lyophilization from an aqueous acetonitrile solution.
Following the General Procedure of Description 22, 4-amino-3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]butanoic acid (10) is prepared from tert-butyl 3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (10a) (578 mg, 1.0 mmol) by hydrolysis in 3.0 M hydrobromic acid (HBr) (about 10 mL) at reflux temperature for about 20 hours to afford the target compound (10) as a dihydrobromide salt after evaporation and lyophilization from an aqueous acetonitrile solution. The material may be further purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient followed by lyophilization in the presence of 1.0 equivalent or an excess of 1.0 M hydrobromic acid (HBr).
Example 11
4-Amino-3-[5-(bis(2-iodoethyl)amino)-2-methyl-phenyl]butanoic acid (11)




Step A: tert-Butyl 3-[5-(bis(2-iodoethyl)amino)-2-methyl-phenyl]-4-(tert butoxycarbonylamino)butanoate (11a)
Following the General Procedure of Description 21, tert-butyl 3-[5-[bis(2-iodoethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (11a) is prepared from (tert-butyl 3-[5-(bis(2-methyl sulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f) (1.22 g, 2.0 mmol) through reaction with sodium iodide (NaI) (3.00 g, 20.0 mmol) in acetone (10 mL) at reflux temperature for about 6 hours to yield the title compound (11a) after work-up and purification by silica gel column chromatography.
Step B: 4-Amino-3-[5-(bis(2-iodoethyl)amino)-2-methyl-phenyl]butanoic acid (11)
Following the General Procedure of Description 22, 4-amino-3-[5-(bis(2-iodoethyl)amino)-2-methyl-phenyl]butanoic acid (11) is prepared from tert-butyl 3-[5-(bis(2-iodoethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (11a) (672 mg, 1.0 mmol) through deprotection in a trifluoroacetic acid (TFA)/dichloromethane (DCM) mixture (TFA:DCM=1:1, 10 mL) at room temperature for about 6 hours to yield the target compound (11) as a ditrifluoroacetate salt after evaporation and lyophilization from an aqueous acetonitrile solution. The material may be further purified by preparative RP-HPLC followed using a water/acetonitrile/0.1 vol-% formic acid gradient followed by lyophilization in the presence of 1.0 equivalent or an excess of 1.0 M hydroiodic acid (HI) under exclusion of light.
Example 12
4-Amino-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (12)




Step A: tert-Butyl 4-(tert-butoxycarbonylamino)-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoate (12a)
Following the General Procedure of Description 21, tert-butyl 4-(tert-butoxycarbonylamino)-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoate (12a) is prepared from tert-butyl 3-[5-(bis(2-methyl sulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f) (1.22 g, 2.0 mmol) through reaction with lithium chloride (LiCl) (93 mg, 2.2 mmol) in anhydrous acetonitrile (MeCN) (10 mL) at reflux temperature for 1.5 hours to yield the title compound (12a) after aqueous work-up and purification by silica gel column chromatography.
Step B: 4-Amino-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (12)
Following the General Procedure of Description 23 (Variant A), 4-amino-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (12) is prepared from tert-butyl 4-(tert-butoxycarbonylamino)-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoate (12a) (550 mg, 1.0 mmol) through deprotection in a trifluoroacetic acid (TFA)/dichloromethane (DCM) mixture (TFA/DCM=1:1 v/v, 10 mL) at room temperature for about 6 hours to yield the target compound (12) as a ditrifluoroacetate salt after evaporation and lyophilization from an aqueous acetonitrile solution.
Following the General Procedure of Description 23 (Variant B), 4-amino-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (12) is prepared from tert-butyl 4-(tert-butoxycarbonylamino)-3-[5-(2-chloroethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoate (12a) (550 mg, 1.00 mmol) in 2 N HCl in diethyl ether (2 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (12) as a solid dihydrochloride salt after evaporation of the solvents and lyophilization from an aqueous acetonitrile solution. The material may be further purified by preparative RP-HPLC followed using a water/acetonitrile/0.1 vol-% formic acid gradient followed by lyophilization in the presence of 1.0 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 13
4-Amino-3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]butanoic acid (13)




Step A: tert-Butyl 3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (13a)
Following the General Procedure of Description 21, tert-butyl 3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (13a) is prepared from tert-butyl 3-[5-(bis(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (9f) (1.10 g, 2.0 mmol) through reaction with lithium chloride (LiBr) (191 mg, 2.2 mmol) in anhydrous acetonitrile (MeCN) (10 mL) at reflux temperature for about 1.5 hours to yield the title compound (13a) after aqueous work-up and purification by silica gel column chromatography.
Step B: 4-Amino-3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]butanoic acid (13)
Following the General Procedure of Description 23 (Variant A), 4-amino-3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]butanoic acid (13) is prepared from tert-butyl 3-[5-(2-bromoethyl(2-chloroethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (13a) (534 mg, 1.0 mmol) through deprotection in a trifluoroacetic acid (TFA)/dichloromethane (DCM) mixture (TFA/DCM=1:1 v/v, 10 mL) at room temperature for about 6 hours to yield the target compound (13) as a ditrifluoroacetate salt after evaporation and lyophilization from an aqueous acetonitrile solution. The material may be further purified by preparative RP-HPLC followed using a water/acetonitrile/0.1 vol-% formic acid gradient followed by lyophilization.
Example 14
4-Amino-3-[5-(2-bromoethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (14)




Step A: tert-Butyl 3-[5-(2-bromoethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (14a)
Adapting literature known protocols (Emmons and Ferris, J. Am Chem. Soc. 1953, 75(9), 2257-2257), tert-butyl 3-[5-(2-bromoethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (14a) is prepared from tert-butyl 3-[5-(bis(2-bromoethyl)amino)-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (10a) (1.16 g, 2.0 mmol) with silver methanesulfonate (silver mesylate, AgOMs) (365 mg, 1.8 mmol) in anhydrous acetonitrile (MeCN) (8 mL) at reflux temperature for about 1 hour under exclusion of light. Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (14a).
Step B: 4-Amino-3-[5-(2-bromoethyl(2-methylsulfonyloxyethyl)amino)-2-methyl phenyl]butanoic Acid (14)
Following the General Procedure of Description 23 (Variant A), 4-amino-3-[5-(2-bromoethyl(2-methylsulfonyloxyethyl)amino)-2-methyl-phenyl]butanoic acid (14) is prepared from tert-butyl 4-(tert-butoxycarbonylamino)-3-[5-(2-bromoethyl(2-methyl sulfonyloxyethyl)amino)-2-methyl-phenyl]butanoate (14a) (544 mg, 1.0 mmol) through deprotection in a trifluoroacetic acid (TFA)/dichloromethane (DCM) mixture (TFA/DCM=1:1 v/v, 10 mL) at room temperature for about 6 hours to yield the target compound (14) as a ditrifluoroacetate salt after evaporation and lyophilization from an aqueous acetonitrile solution. The material may be further purified by preparative RP-HPLC followed using a water/acetonitrile/0.1 vol-% formic acid gradient followed by lyophilization.
Example 15
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (15)




Step A: Methyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (15a)
Methyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (15a) is prepared from commercial 2-methyl-5-nitro-benzaldehyde (5j) (for a synthesis of (5j) see also Example 5, Method B) and commercial trimethyl phosphonoacetate as described in Example 2.
Step B: Methyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-pentanoate (15b)
Following the General Procedure of Description 3, methyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-pentanoate (15b) is prepared from methyl (E)-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (15a) (3.38 g, 15.3 mmol) in a mixture of nitroethane (EtNO2) (10.7 mL, 11.3 g, 150 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.24 mL, 2.28 g, 15.0 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (15b) as a mixture of diastereomers which may be separated.
Step C: 4-(5-Amino-2-methyl-phenyl)-5-methyl-pyrrolidin-2-one (15c)
Following the General Procedure of Description 4, 4-(5-amino-2-methyl-phenyl)-5-methyl-pyrrolidin-2-one (15c) is prepared from methyl 3-(2-methyl-5-nitro-phenyl)-4-nitro-pentanoate (15b) (2.96 g, 10.0 mmol), freshly washed active Raney®-3202 nickel (about 10 mL of slurry) in ethanol (EtOH) (about 85 mL) using a Parr hydrogenation apparatus under about 50 psi hydrogen pressure. After filtration over Celite® 545 and completion of the lactamization through heating in toluene at about 95° C. (oil bath temperature), purification by silica gel column chromatography with a mixture of dichloromethane (DCM) and methanol (MeOH) affords the title compound (15c) as a mixture of diastereomers which may be separated.
Step D: 4-[5-[Bis(2-chloroethyl)amino]-2-methyl-phenyl]-5-methyl-pyrrolidin-2-one (15d)
Following the General Procedure of Description 17 (Variant A), 4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-5-methyl-pyrrolidin-2-one (15d) is prepared from 4-(5-amino-2-methyl-phenyl)-5-methyl-pyrrolidin-2-one (15c) (408 mg, 2.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.27 mL, 10.0 mmol), and sodium cyanoborohydride (NaBH3CN) (503 mg, 8.0 mmol) in a mixture of methanol (MeOH) (8 mL) and trifluoroacetic acid (TFA) (4 mL). Aqueous work-up and purification by silica gel column chromatography with ethyl acetate (EtOAc) and hexane mixtures afford the title compound (15d) as a mixture of diastereomers which may be separated.
Step E: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]pentanoic acid (15)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]pentanoic acid (15) is prepared from 4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-5-methyl-pyrrolidin-2-one (15d) (329 mg, 1.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 6 mL) and 1.4-dioxane (about 6 mL) at reflux temperature for about 14 hours to afford the title compound (15) as a dihydrochloride salt after isolation using evaporation and lyophilization. The material obtained is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (15) as a dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The diastereomers may be separated simultaneously during the purification step.
Example 16
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-2-fluoro-butanoic acid (16)




Step A: tert-Butyl-2-fluoro-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (16a)
Following the General Procedure of Description 2 (Variant A), tert-butyl-2-fluoro-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (16a) is prepared from commercial 2-methyl-5-nitro-benzaldehyde (5j) (for a synthesis of (5j) see also Example 5, Method B) (3.30 g, 20.0 mmol), commercial tert-Butyl 2-diethoxyphosphoryl-2-fluoro-acetate (3.71 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (30 mL). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (16a). The mixture of (E)/(Z)-isomers may be separated.
Step B: tert-Butyl 2-fluoro-3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (16b)
Following the General Procedure of Description 3, tert-butyl 2-fluoro-3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (16b) is prepared from tert-butyl-2-fluoro-3-(2-methyl-5-nitro-phenyl)prop-2-enoate (16a) (4.22 g, 15.0 mmol) in a mixture of nitromethane (MeNO2) (10 mL, 11.4 g, 187 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.24 mL, 2.28 g, 15.0 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (16b) as a mixture of diastereomers, which may be separated.
Step C: tert-Butyl 4-amino-3-(5-amino-2-methyl-phenyl)-2-fluoro-butanoate (16c)
Following the General Procedure of Description 16, tert-butyl 4-amino-3-(5-amino-2-methyl-phenyl)-2-fluoro-butanoate (16c) is prepared by global reduction of tert-butyl 2-fluoro-3-(2-methyl-5-nitro-phenyl)-4-nitro-butanoate (16b) (3.42 g, 10.0 mmol) in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water ( ̃1.5 g) in methanol (MeOH) (40 mL) and under an atmosphere of hydrogen ( ̃15 psi, H2-balloon). The crude material after filtration may be used directly and without further isolation in the next step or may be purified by preparative HPLC to afford the title compound (16c). The mixture of diastereomers may be separated.
Step D: tert-Butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-2-fluoro-butanoate (16d)
Following the General Procedure of Description 15, tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-2-fluoro-butanoate (16d) is prepared from tert-butyl 4-amino-3-(5-amino-2-methyl-phenyl)-2-fluoro-butanoate (2.82 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (16d) as a mixture of diastereomers which may be separated.
Step E: tert-Butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-2-fluoro-butanoate (16e)
Following the General Procedure of Description 17 (Variant A), tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-2-fluoro-butanoate (16e) is prepared from tert-butyl 3-(5-amino-2-methyl-phenyl)-4-(tert-butoxycarbonylamino)-2-fluoro-butanoate (16d) (765 mg, 2.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.27 mL, 10.0 mmol), and sodium cyanoborohydride (NaBH3CN) (503 mg, 8.0 mmol) in a mixture of methanol (MeOH) (8 mL) and trifluoroacetic acid (TFA) (4 mL). Aqueous work-up and purification by silica gel column chromatography with ethyl acetate (EtOAc) and hexane mixtures afford the title compound (16e) as a mixture of diastereomers, which may be separated.
Step F: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-2-fluoro-butanoic acid (16)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-2-fluoro-butanoic acid (16) is prepared from tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-2-fluoro-butanoate (16e) (508 mg, 1.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 6 mL) and 1.4-dioxane (about 6 mL) at reflux temperature for about 14 hours to afford the title compound (16) as a dihydrochloride salt after isolation using evaporation and lyophilization. The material thus obtained is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (16) as a dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The diastereomers may be separated simultaneously during the purification step.
Example 17
3-(Aminomethyl)-4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-hydroxy-butanoic Acid (17)




Step A: 2-(tert-Butyl(dimethyl)silyl)oxy-2-(2-methyl-5-nitro-phenyl)acetaldehyde (17a)
Adapting literature known protocols (International Application Publication No. WO 2002/066410; and Effenberger et al., Chem. Ber., 1991, 124(7), 1651-1659), 2-(tert-Butyl(dimethyl)silyl)oxy-2-(2-methyl-5-nitro-phenyl)acetaldehyde (17a) is prepared from commercial 2-methyl-5-nitro-benzaldehyde (5j) (for a synthesis of (5j) see also Example 5, Method B) following a sequence of i) cyanohydrin reaction, ii) hydrolysis, iii) esterification, iv) O-silylether protection, and v) ester reduction.
Step B: tert-Butyl (E)-4-(tert-butyl(dimethyl)silyl)oxy-4-(2-methyl-5-nitro-phenyl)but-2-enoate (17b)
Following the General Procedure of Description 2 (Variant A), tert-butyl (E)-4-(tert-butyl(dimethyl)silyl)oxy-4-(2-methyl-5-nitro-phenyl)but-2-enoate (17b) is prepared from 2-(tert-Butyl(dimethyl)silyl)oxy-2-(2-methyl-5-nitro-phenyl)acetaldehyde (17a) (6.19 g, 20.0 mmol), commercial tert-butyl diethyl phosphonoacetate (5.87 mL, 6.31 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (30 mL). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (17b) as a mixture of geometric (E)/(Z)-isomers, which may be separated.
Step C: tert-Butyl 4-(tert-butyl(dimethyl)silyl)oxy-4-(2-methyl-5-nitro-phenyl)-3-(nitro-methyl)butanoate (17c)
Following the General Procedure of Description 3, tert-butyl 4-(tert-butyl(dimethyl)silyl)oxy-4-(2-methyl-5-nitro-phenyl)-3-(nitromethyl)butanoate (17c) is prepared from tert-butyl (E)-4-(tert-butyl(dimethyl)silyl)oxy-4-(2-methyl-5-nitro-phenyl)but-2-enoate (17b) (6.11 g, 15.0 mmol) in a mixture of nitromethane (MeNO2) (10 mL, 11.4 g, 187 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.24 mL, 2.28 g, 15.3 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (17c) as a mixture of diastereomers, which may be separated.
Step D: tert-Butyl 3-(aminomethyl)-4-(5-amino-2-methyl-phenyl)-4-(tert-butyl(dimethyl)-silyl)oxy-butanoate (17d)
Adapting literature known protocols (Osby and Ganem, Tetrahedron Lett., 1985, 26(52), 6413-6416), a mixture of nickel(II) dichloride hexahydrate (NiCl2 6H2O) (1.19 g, 5.0 mmol) in methanol (MeOH) (80 mL) is sonicated to effect complete dissolution. Solid sodium borohydride (NaBH4) (567 mg, 15.0 mmol) is added in small portions upon a black precipitate (Ni2B) is generated immediately and hydrogen gas is generated (exotherm!). After about 30 min, a solution of tert-butyl 4-(tert-butyl(dimethyl)silyl)oxy-4-(2-methyl-5-nitro-phenyl)-3-(nitromethyl)butanoate (17c) (4.69 g, 10.0 mmol) in MeOH (20 mL) is added followed by portion-wise addition of more NaBH4 (1.13 g, 30.0 mmol) at room temperature. The reaction is monitored by TLC and/or LCMS till completion. The reaction mixture is filtered over Celite®545 and the filter residue is washed with additional MeOH. The combined filtrates are evaporated to dryness under reduced pressure using a rotary evaporator. The crude tert-butyl 3-(aminomethyl)-4-(5-amino-2-methyl-phenyl)-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17d) is used directly in the next step without further isolation and purification procedures.
Step E: tert-Butyl 4-(5-amino-2-methyl-phenyl)-3-[(tert-butoxycarbonylamino)methyl]-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17e)
Following the General Procedure of Description 15, tert-butyl 4-(5-amino-2-methyl-phenyl)-3-[(tert-butoxycarbonylamino)methyl]-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17e) is prepared from tert-butyl 3-(aminomethyl)-4-(5-amino-2-methyl-phenyl)-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17d) (4.09 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (17e) as a mixture of diastereomers, which may be separated.
Step F: tert-Butyl 4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-[(tert-butoxycarbonylamino)methyl]-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17f)
Following the General Procedure of Description 17 (Variant B), tert-butyl 4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-[(tert-butoxycarbonylamino)methyl]-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17f) is prepared from tert-butyl 4-(5-amino-2-methyl-phenyl)-3-[(tert-butoxycarbonylamino)methyl]-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17e) (1.02 g, 2.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.27 mL, 10.0 mmol), and sodium cyanoborohydride (NaBH3CN) (503 mg, 8.0 mmol) in a mixture of methanol (MeOH) (6 mL) and acetic acid (HOAc) (6 mL). Aqueous work-up and purification by silica gel column chromatography with ethyl acetate (EtOAc) and hexane mixtures afford the title compound (17f) as a mixture of diastereomers, which may be separated.
Step G: 3-(Aminomethyl)-4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-hydroxy-butanoic acid (17)
Following the General Procedure of Description 22, 3-(aminomethyl)-4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-hydroxy-butanoic acid (17) is prepared from tert-butyl 4-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-[(tert-butoxycarbonylamino)methyl]-4-(tert-butyl(dimethyl)silyl)oxy-butanoate (17f) (634 mg, 1.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 6 mL) and 1.4-dioxane (about 6 mL) at about 60° C. (oil bath temperature) for about 8 hours to afford the title compound (17) as a dihydrochloride salt after isolation using evaporation and lyophilization. The material obtained is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (17) as a dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). The diastereomers may be separated simultaneously during the purification step.
Example 18
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-nitro-phenyl]butanoic acid (18)







Step A: Methyl (E)-3-(5-chloro-2-nitro-phenyl)prop-2-enoate (18a)
Following the General Procedure of Description 2 (Variant A), methyl (E)-3-(5-chloro-2-nitro-phenyl)prop-2-enoate (18a) is prepared from commercial 5-chloro-2-nitro-benzaldehyde (6.50 g, 35.0 mmol), trimethyl phosphonoacetate (7.08 mL, 7.97 g, 43.75 mmol), and anhydrous lithium bromide (LiBr) (4.56 g, 52.5 mmol) in a mixture of triethylamine (Et3N, TEA) (6.71 mL, 4.87 g, 48.1 mmol) and acetonitrile (MeCN) (35 mL). Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexane mixtures afford the title compound (18a).
Step B: 3-(5-Chloro-2-nitro-phenyl)pentanedioic acid (18b)
Step i: Trimethyl 2-(5-chloro-2-nitro-phenyl)propane-1,1,3-tricarboxylate (18b′)
Adapting literature known protocols (Liu, et al., Tetrahedron: Asymmetry, 2001, 12, 419-426 and Stowe, et al., Org. Lett., 2010, 12(4), 756-759), a solution of sodium methoxide (MeONa) is prepared by dissolving sodium metal (Na) (300 mg, 13.0 mol) in anhydrous methanol (MeOH) (10 mL) at about 0° C. (ice bath) under a nitrogen atmosphere. A solution of dimethyl malonate (1.49 mL, 1.72 g, 13.0 mol) is added followed by a solution of methyl (E)-3-(5-chloro-2-nitro-phenyl)prop-2-enoate (18a) (2.42 g, 10.0 mol) in MeOH (10 mL) after about 30 min. The reaction mixture is gradually warmed to room temperature and subsequently heated at reflux (75° C. oil bath temperature). The reaction is monitored by TLC and/or analytical LC/MS to completion. The reaction is evaporated to dryness under reduced pressure using a rotary evaporator. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford trimethyl 2-(5-chloro-2-nitrophenyl)propane-1,1,3-tricarboxylate (18b′).
Step ii: 3-(5-Chloro-2-nitro-phenyl)pentanedioic acid (18b)
Variant A:
Adapting literature known protocols (Liu, et al., Tetrahedron: Asymmetry, 2001, 12, 419-426), 3-(5-chloro-2-nitro-phenyl)pentanedioic acid (18b) is prepared by heating a suspension of trimethyl 2-(5-chloro-2-nitro-phenyl)propane-1,1,3-tricarboxylate (18b′) (3.74 g, 10.0 mol) in 1.0 M aqueous sodium hydroxide (NaOH) (10 mL) to gentle reflux for about 12 h (105° C. oil bath temperature) followed by acidifying with concentrated hydrochloric acid (HCl) to pH 0-1 at about room temperature. The solution is then heated to reflux for about 12 h (105° C. oil bath temperature) to effect complete decarboxylation. The reaction is monitored by TLC and/or analytical LC/MS to completion. The aqueous solution is distilled to remove most of the water and extracted with ethyl acetate. Aqueous work-up and purification by crystallization from ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (18b).
Variant B:
Adapting literature known protocols (Krapcho, Synthesis, 1982, 805-822 & 893-914; and Stowe, et al., Org. Lett., 2010, 12(4), 756-759), a solution of trimethyl 2-(5-chloro-2-nitro-phenyl)propane-1,1,3-tricarboxylate (18b′) (3.74 g, 10.0 mol) and sodium chloride (NaCl) (292 mg, 5.0 mmol) in a mixture of dimethylsulfoxide (DMSO) (23 mL) and water (780 μL) is heated to reflux for about 12 h. The reaction is monitored by TLC and/or analytical LC/MS to completion. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford dimethyl 3-(5-chloro-2-nitro-phenyl)pentanedioate (18b′′). Adapting literature known protocols (Nejman, et al., Tetrahedron, 2005, 61, 8536-854), 3-(5-chloro-2-nitro-phenyl)pentanedioic acid (18b) is prepared heating a solution of dimethyl 3-(5-chloro-2-nitro-phenyl)pentanedioate (18b′′) (3.16 g, 10.0 mmol) in a mixture of 6.0 M hydrochloric acid (HCl) and 1,4-dioxane for about 12 h to reflux (105° C. oil bath temperature) to effect complete ester hydrolysis and decarboxylation. The reaction is monitored by TLC and/or analytical LC/MS to completion. The solvents are distilled off under reduced pressure using a rotary evaporator. Aqueous work-up and purification by crystallization from ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (18b).
Step C: 4-(5-Chloro-2-nitro-phenyl)tetrahydropyran-2,6-dione (18c)
Adapting literature known protocols (Sulyok, J. Med. Chem., 2001, 44(12), 1938-1950; Ji, et al., Tetrahedron Lett., 2009, 50(45), 6166-6168; and Liu, et al., Tetrahedron: Asymmetry, 2001, 12, 419-426), 4-(5-chloro-2-nitro-phenyl)tetrahydropyran-2,6-dione (18c) is prepared by heating 3-(5-chloro-2-nitro-phenyl)pentanedioic acid (18b) (2.88 g, 10.0 mmol) in acetic anhydride (Ac2O) (2.83 mL, 3.06 g, 30 mmol) at reflux (about 130° C. oil bath temperature). After cooling to room temperature, the title compound (18c) is precipitated with diethyl ether (Et2O) the solid collected by filtration, washed with cold Et2O and dried under reduced pressure to remove residual solvents.
Step D: 5-Amino-3-(5-chloro-2-nitro-phenyl)-5-oxo-pentanoic acid (18d)
Adapting literature known protocols (Ji, et al., Tetrahedron Lett., 2009, 50(45), 6166-6168; and Hoekstra, et al., Org. Proc. Dev. Dev., 1997, 1(1), 26-38), 5-amino-3-(5-chloro-2-nitro-phenyl)-5-oxo-pentanoic acid (18d) is prepared from 4-(5-chloro-2-nitro-phenyl)tetrahydropyran-2,6-dione (18a) (2.70 g, 10.0 mmol) in tetrahydrofuran (THF) (20 mL) with a concentrated solution of ammonia (NH3) in methanol (MeOH) ( ̃7.0 M; about 100 mL) at room temperature for about 14 hours. The reaction course is followed by TLC and/or LC/MS till completion. The reaction mixture is concentrated to dryness under reduced pressure using a rotary evaporator. The residue is triturated with ethyl acetate (EtOAc) (2×). The solids remaining after titruation are acidified at a temperature of about 0° C. (ice bath) with 1.0 M hydrochloric acid. Aqueous work-up yields the title compound (18d). The crude material may either be used directly in the next step or may be further purified by silica gel column chromatography using methanol (MeOH), dichloromethane (DCM), and hexane mixtures or by re-crystallization.
Step E: Methyl 5-amino-3-(5-chloro-2-nitro-phenyl)-5-oxo-pentanoate (18e)
Adapting literature known protocols, methyl 5-amino-3-(5-chloro-2-nitro-phenyl)-5-oxo-pentanoate (18e) is prepared from 5-amino-3-(5-chloro-2-nitro-phenyl)-5-oxo-pentanoic acid (18d) (2.87 g, 10.0 mmol), and iodomethane (MeI) (1.87 mL, 4.26 g, 30.0 mmol) in the presence of potassium carbonate (K2CO3) (5.53 g, 40.0 mmol) in anhydrous N,N-dimethylformamide (DMF) (about 30 mL) at room temperature. The reaction is monitored by TLC and/or analytical LC/MS to completion. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (18e).
Step F: 4-(5-Chloro-2-nitro-phenyl)pyrrolidin-2-one (18f)
Adapting literature known protocols (Loudon, et al., J. Org. Chem., 1984, 49(22), 4272-4276; Loudon and Boutin, J. Org. Chem., 1984, 49(22), 4277-4286; Nicolaou, et al., Bioorg. Med. Chem. 1998, 6(8), 1185-1208; and Ji et al., Tetrahedron Lett., 2009, 50(45), 6166-6168), 4-(5-chloro-2-nitro-phenyl)pyrrolidin-2-one (18f) is prepared from methyl 5-amino-3-(5-chloro-2-nitro-phenyl)-5-oxo-pentanoate (18e) (2.87 g, 10.0 mmol) in a mixture of acetonitrile (MeCN) (15 mL) and water (15 mL) through an acidic Hoffmann-rearrangement with [I,I-bis(trifluoroacetoxy)iodo]benzene (phenyl iodosyl bis(trifluoroacetate, PIFA) (4.25 g, 10.0 mmol) followed by partial spontaneous intramolecular lactamization of the intermittent amine at room temperature. The reaction may be monitored by TLC and/or analytical LC/MS to completion. The reaction mixture is diluted with 2.0 M hydrochloric acid (HCl). The aqueous phase is extracted with diethyl ether (Et2O) (3×) to remove ether-soluble iodobenzene dichloride which is discarded. The aqueous phase is frozen and the solvents lyophilized off to yield an intermediate hydrochloride. The hydrochloride is diluted with water and the aqueous phase is adjusted to pH 8-9 with 2.0 M aqueous sodium hydroxide (NaOH). The aqueous phase is extracted with ethyl acetate (EtOAc) (3×). The combined organic extracts are either partially evaporated under reduced pressure followed by heating directly at reflux for about 6 hours to yield the crude title compound (18f). Alternatively, the solvent is evaporated under reduced pressure using a rotary evaporator, the residue is diluted with toluene or benzene and the solution is heated at reflux for about 6 hours. The crude material (18f) may either be used directly in the next step or may be further purified by silica gel chromatography using EtOAc, methanol (MeOH), dichloromethane (DCM), and/or hexanes or by re-crystallization.
Step G: 4-[5-(Bis(2-hydroxyethyl)amino)-2-nitro-phenyl]pyrrolidin-2-one (18g)
Adapting literature known protocols (Atwell, et al., J. Med. Chem., 2007, 50(6), 1197-1212; Palmer, et al., J. Med. Chem., 1994, 37, 2175-2184; Palmer, et al., J. Med. Chem., 1992, 35(17), 3214-3222; Palmer, et al., J. Med. Chem, 1990, 33(1), 112-121; Davies, et al., J. Med. Chem. 2005, 48(16), 5321-5328; Jordan, et al., Bioorg. Med. Chem., 2002, 10(8), 2625-2633; Dheyongera, et al., Bioorg. Med. Chem., 2005, 13(3), 689-698; Lin, et al., Bioorg. Med. Chem. Lett., 2011, 21(3), 940-943; and Ferlin, et al., Bioorg. Med. Chem., 2004, 12(4), 771-777), 4-[5-(bis(2-hydroxyethyl)amino)-2-nitro-phenyl]pyrrolidin-2-one (18g) is prepared from 4-(5-chloro-2-nitro-phenyl)pyrrolidin-2-one (18f) (2.41 g, 10.0 mmol) through nucleophilic aromatic displacement (SNAr) with 2-(2-hydroxyethylamino)ethanol (diethanolamine) (1.92 mL, 2.10 g, 20.0 mmol) at a temperature of about 80-140° C. for about 4-12 h. Optionally, the reaction is conducted in an organic solvent, e.g., anhydrous dimethylsulfoxide (DMSO) or 1,4-dioxane (about 20 mL), or in the presence of a catalyst, e.g., copper powder (64 mg, 1.0 mmol, 10 mol-%). The reaction may be monitored by TLC and/or analytical LC/MS to completion. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc), methanol (MeOH), dichloromethane (DCM), and hexanes mixtures afford the title compound (18g).
Step H: 4-[5-(Bis(2-chloroethyl)amino)-2-nitro-phenyl]pyrrolidin-2-one (18h)
Following the General Procedure of Description 19 (Variant B), 4-[5-(bis(2-chloroethyl)amino)-2-nitro-phenyl]pyrrolidin-2-one (18h) is prepared from 4-[5-(bis(2-hydroxyethyl)amino)-2-nitro-phenyl]pyrrolidin-2-one (18g) (618 mg, 2.0 mmol) through reaction with phosphoryl chloride (POCl3) (0.93 mL, 1.53 g, 10.0 mmol) in anhydrous benzene (10 mL) for about 5 h at a temperature of about 80° C. to yield the title compound (18h) after work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc), methanol (MeOH), dichloromethane (DCM), and hexanes mixtures.
Step I: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-nitro-phenyl]butanoic acid (18)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-nitro-phenyl]butanoic acid (18) is prepared from 4-[5-(bis(2-chloroethyl)amino)-2-nitro-phenyl]pyrrolidin-2-one (18h) (346 mg, 1.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 5 mL) and 1,4-dioxane (about 5 mL) at about 90° C. for about 15 hours to afford the title compound (18) as a dihydrochloride salt after isolation using evaporation and lyophilization. The material obtained is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (18) as a dihydrochloride salt after final lyophilization of the solvents in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 19
[3-Amino-2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]propyl]phosphinic acid (19)




Step A: 1-Methyl-4-nitro-2-[(E)-2-nitrovinyl]benzene (19a)
Adapting literature known protocols (U.S. Pat. No. 8,344,028; and Kabalka and Varma, Org. Prep. Proced. Int., 1987, 19(4-5), 283-328), 1-methyl-4-nitro-2-[(E)-2-nitrovinyl]benzene (19a) is prepared by heating a solution of commercial 2-methyl-5-nitro-benzaldehyde (5j) (1.65 g, 10.0 mmol) (for a synthesis of (5j) see also Example 5, Method B), ammonium acetate (NH4OAc) (1.31 g, 17.0 mmol) in a mixture of nitromethane (MeNO2) (1.61 mL, 1.83 g, 30.0 mmol) and acetic acid (HOAc) (10.0 mL) to reflux for about 3 hours. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (19a).
Step B: 2-[1-[(1,1-Diethoxyethyl(ethoxy)phosphoryl)methyl]-2-nitro-ethyl]-1-methyl-4-nitro-benzene (19b)
Adapting literature known protocols (U.S. Pat. No. 8,344,028; and Baylis, Tetrahedron Lett., 1995, 36(51), 9385-9388), 2-[1-[(1,1-diethoxyethyl(ethoxy)phosphoryl)-methyl]-2-nitro-ethyl]-1-methyl-4-nitro-benzene (19b) is prepared from 1-methyl-4-nitro-2-[(E)-2-nitrovinyl]benzene (19a) through 1,4-conjugate addition of lithiated commercial 1-[1-ethoxy-1-(ethoxy(methyl)phosphoryl)ethoxy]ethane (Baillie, et al., U.S. Pat. No. 4,339,443 (1982). To a solution of [1-ethoxy-1-(ethoxy(methyl)phosphoryl)ethoxy]ethane (2.65 mL, 2.69 g, 12.0 mmol) in anhydrous tetrahydrofuran (THF) (15 mL) and under a nitrogen atmosphere and at a temperature of about −78° C. (dry ice/acetone bath) is dropwise added a solution of n-butyllithium (nBuLi) in hexane (12.0 mL, 12.0 mmol). After about 30 min, the solution of the lithiated compound is added via a cannula within about 5 minutes to a cooled solution ( ̃78° C.; dry ice/acetone bath, nitrogen atmosphere) of (19a) (2.08 g, 10.0 mmol) in anhydrous tetrahydrofuran (THF) (15 mL). The reaction is stirred at this temperature for about 30 minutes followed by gradual warming to about 0° C. (ice/water bath). Stirring is continued at this temperature for another 30 minutes. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (19b).
Step C: 3-[1-(Aminomethyl)-2-(1,1-diethoxyethyl(ethoxy)phosphoryl)ethyl]-4-methyl-aniline (19c)
Adapting a literature known protocol (U.S. Pat. No. 8,344,028) and following the General Procedure of Description 3, 3-[1-(aminomethyl)-2-(1,1-diethoxyethyl(ethoxy)phosphoryl)ethyl]-4-methyl-aniline (19c) is prepared from 2-[1-[(1,1-diethoxyethyl(ethoxy)phosphoryl)methyl]-2-nitro-ethyl]-1-methyl-4-nitro-benzene (19b) (4.32 g, 10.0 mmol)), freshly washed active Raney®-3202 nickel (about 10 mL of slurry) in ethanol (EtOH) (75 mL) using a Parr hydrogenation apparatus under about 50 psi hydrogen pressure. Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (19c).
Step D: tert-Butyl N-[2-(5-amino-2-methyl-phenyl)-3-(1,1-diethoxyethyl(ethoxy)-phosphoryl)-propyl]carbamate (19d)
Following the General Procedure of Description 15, tert-butyl N-[2-(5-amino-2-methyl-phenyl)-3-(1,1-diethoxyethyl(ethoxy)phosphoryl)-propyl]carbamate (19d) is prepared from 3-[1-(aminomethyl)-2-(1,1-diethoxyethyl(ethoxy)phosphoryl)ethyl]-4-methyl-aniline (19c) (3.72 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (19d).
Step E: tert-Butyl N-[2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-(1,1-diethoxyethyl(ethoxy)phosphoryl)propyl]carbamate (19e)
Following the General Procedure of Description 17 (Variant C), tert-butyl N-[2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-(1,1-diethoxyethyl(ethoxy)phosphoryl)-propyl]carbamate (19e) is prepared from tert-butyl N-[2-(5-amino-2-methyl-phenyl)-3-(1,1-diethoxyethyl(ethoxy)phosphoryl)-propyl]carbamate (19d) (945 mg, 2.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.52 mL, 12.0 mmol), and sodium cyanoborohydride (NaBH3CN) (628 mg, 10.0 mmol) in a mixture of methanol (MeOH) (10 mL) and 85 wt-% phosphoric acid (H3PO4) (5 mL). Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (19e).
Step F: [3-Amino-2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]propyl]phosphinic acid (19)
Following the General Procedure of Description 22, [3-amino-2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]propyl]phosphinic acid (19) is prepared from protected (3-substituted γ-amino acid analog N-mustard (19e) (598 mg, 1.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 5 mL) and 1,4-dioxane (about 5 mL) at about 90° C. for about 15 hours to afford the title compound (20) as a dihydrochloride salt after isolation using evaporation and lyophilization. The material thus obtained is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (19) as a dihydrochloride salt after final lyophilization of the solvents in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 20
3-[1-(Aminomethyl)-2-(1H-tetrazol-5-yl)ethyl]-N,N-bis(2-chloroethyl)-4-methyl-aniline (20)




Step A: 1-Methyl-4-nitro-2-[(E)-2-nitrovinyl]benzene (19a)
Adapting literature known protocols (U.S. Pat. No. 8,344,028; and Kabalka and Varma, Org. Prep. Proced. Int., 1987, 19(4-5), 283-328), 1-methyl-4-nitro-2-[(E)-2-nitrovinyl]benzene (19a) is prepared from commercial 2-methyl-5-nitro-benzaldehyde (5j) (for a synthesis of (5j) see also Example 5, Method B) as described in Example 19, Step A.
Step B: 5-[2-(2-Methyl-5-nitro-phenyl)-3-nitro-propyl]-1-trityl-tetrazole (20b)
Adapting literature known protocols (Huff et al., Tetrahedron Lett., 1996, 37(12), 3655-3658; Baylis, Tetrahedron Lett., 1995, 36(51), 9385-9388; and Xu, et al., U.S. Pat. No. 8,344,028 (2013)), 5-[2-(2-methyl-5-nitro-phenyl)-3-nitro-propyl]-1-trityl-tetrazole (20b) is prepared from 1-methyl-4-nitro-2-[(E)-2-nitrovinyl]benzene (19a) through 1,4-conjugate addition of lithiated 5-methyl-1-trityl-tetrazole (Huff et al., Tetrahedron Lett., 1996, 37(12), 3655-3658). 5-Methyl-1-trityl-tetrazole (3.92 g, 12.0 mmol) in anhydrous tetrahydrofuran (THF) (15 mL) is lithiated under a nitrogen atmosphere and at a temperature of about −78° C. (dry ice/acetone bath) with n-butyllithium (nBuLi) in hexane (12.0 mL, 12.0 mmol) and added via a cannula to a cooled solution ( ̃78° C.; dry ice/acetone bath, nitrogen atmosphere) of (19a) (2.08 g, 10.0 mmol) in anhydrous tetrahydrofuran (THF) (15 mL). Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (20b).
Step C: 3-[1-(Aminomethyl)-2-(1-trityltetrazol-5-yl)ethyl]-4-methyl-aniline (20c)
Adapting a literature known protocol (Osby and Ganem, Tetrahedron Lett., 1985, 26(52), 6413-6416), a mixture of nickel(II) dichloride hexahydrate (NiCl2 6H2O) (1.19 g, 5.0 mmol) in methanol (MeOH) (80 mL) is sonicated to effect complete dissolution. Solid sodium borohydride (NaBH4) (567 mg, 15.0 mmol) is added in small portions upon a black precipitate (Ni2B) is generated immediately and hydrogen gas is generated (exotherm!). After about 30 min, a solution of 5-[2-(2-methyl-5-nitro-phenyl)-3-nitro-propyl]-1-trityl-tetrazole (20b) (5.35 g, 10.0 mmol) in MeOH (20 mL) is added followed by portion-wise addition of more NaBH4 (1.13 g, 30.0 mmol) at room temperature. The reaction is monitored by TLC and/or LCMS to completion. The reaction mixture is filtered over Celite® 545 and the filter residue is washed with additional MeOH. The combined filtrates are evaporated to dryness under reduced pressure using a rotary evaporator. The crude material (20c) is used directly in the next step without further isolation and purification.
Step D: tert-Butyl N-[2-(5-amino-2-methyl-phenyl)-3-(1-trityltetrazol-5-yl)propyl]carbamate (20d)
Following the General Procedure of Description 15, tert-butyl N-[2-(5-amino-2-methyl-phenyl)-3-(1-trityltetrazol-5-yl)propyl]carbamate (20d) is prepared from 3-[1-(aminomethyl)-2-(1-trityltetrazol-5-yl)ethyl]-4-methyl-aniline (20c) (4.75 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (20d).
Step E: tert-Butyl N-[2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-(1H-tetrazol-5-yl)propyl]carbamate (20e)
Following the General Procedure of Description 17 (Variant C), tert-butyl N-[2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-(1H-tetrazol-5-yl)propyl]carbamate (20e) is prepared from tert-butyl N-[2-(5-amino-2-methyl-phenyl)-3-(1-trityltetrazol-5-yl)propyl]carbamate (20d) (1.15 g, 2.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (1.52 mL, 12.0 mmol), and sodium cyanoborohydride (NaBH3CN) (628 mg, 10.0 mmol) in a mixture of methanol (MeOH) (10 mL) and 85 wt-% phosphoric acid (H3PO4) (5 mL). Aqueous work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexanes mixtures afford the title compound (20e).
Step F: 3-[1-(Aminomethyl)-2-(1H-tetrazol-5-yl)ethyl]-N,N-bis(2-chloroethyl)-4-methyl-aniline (20)
Following the General Procedure of Description 22, [3-amino-2-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]propyl]phosphinic acid (20) is prepared from protected (3-substituted γ-amino acid analog N-mustard (20e) (457 mg, 1.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 5 mL) and 1,4-dioxane (about 5 mL) at about 60° C. for about 15 hours to afford the title compound (20) as a solid dihydrochloride salt after isolation using evaporation and lyophilization. The material obtained is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (20) as a dihydrochloride salt after final lyophilization of the solvents in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 21
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]butanoic acid (21)




Step A: tert-Butyl (E)-3-(2-methoxy-5-nitro-phenyl)prop-2-enoate (21a)
Following the General Procedure of Description 2 (Variant A), tert-butyl (E)-3-(2-methoxy-5-nitro-phenyl)prop-2-enoate (21a) is prepared from commercial 2-methoxy-5-nitro-benzaldehyde (3.62 g, 20.0 mmol), commercial tert-butyl diethyl phosphonoacetate (5.87 mL, 6.31 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (30 mL). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (21a).
Step B: tert-Butyl 3-(2-methoxy-5-nitro-phenyl)-4-nitro-butanoate (21b)
Following the General Procedure of Description 3, tert-butyl 3-(2-methoxy-5-nitro-phenyl)-4-nitro-butanoate (21b) is prepared from tert-butyl (E)-3-(2-methoxy-5-nitro-phenyl)prop-2-enoate (21a) (4.19 g, 15.0 mmol) in a mixture of nitromethane (MeNO2) (10 mL, 11.4 g, 187 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.24 mL, 2.28 g, 15.3 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (21b).
Step C: tert-Butyl 4-amino-3-(5-amino-2-methoxy-phenyl)butanoate (21c)
Following the General Procedure of Description 16, tert-butyl 4-amino-3-(5-amino-2-methoxy-phenyl)butanoate (21c) is prepared by global reduction of tert-butyl 3-(2-methoxy-5-nitro-phenyl)-4-nitro-butanoate (21b) (3.40 g, 10.0 mmol) in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water ( ̃1.5 g) in methanol (MeOH) (40 mL) and under an atmosphere of hydrogen ( ̃15 psi, H2-balloon). The crude material after filtration may be used directly and without further isolation in the next step or may be purified by preparative HPLC to afford the title compound (21c).
Step D: tert-Butyl 3-(5-amino-2-methoxy-phenyl)-4-(tert-butoxycarbonylamino)butanoate (21d)
Following the General Procedure of Description 15, tert-butyl 3-(5-amino-2-methoxy-phenyl)-4-(tert-butoxycarbonylamino)butanoate (21d) is prepared from tert-butyl 4-amino-3-(5-amino-2-methoxy-phenyl)butanoate (21c) (2.80 g, 10.0 mmol) in anhydrous dichloromethane (DCM) (30 mL) at about 0° C. (ice bath) with di-tert-butyl dicarbonate (Boc2O) (2.29 g, 10.5 mmol) in the presence of triethylamine (Et3N, TEA) (1.67 mL, 1.21 g, 12.0 mmol) and a catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (61 mg, 0.5 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane yield the title compound (21d).
Step E: tert-Butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21e)
Variant A:
Following the General Procedure of Description 18, tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21e) is prepared from tert-butyl 3-(5-amino-2-methoxy-phenyl)-4-(tert-butoxycarbonylamino)butanoate (21d) (3.81 g, 10.0 mmol) through reaction with ethylene oxide (12.5 mL, 11.0 g, 100.0 mmol) in 15 mL of 50 vol.-% aqueous acetic acid (HOAc) for 24 hours at room temperature to yield the title compound (21e) after aqueous work-up and purification by silica gel chromatography.
Step F: tert-Butyl 3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21f)
Following the General Procedure of Description 19 (Variant A), tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21f) is prepared from tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21e) (2.43 g, 5.0 mmol) through reaction with thionyl chloride (SOCl2) (3.63 mL, 5.93 g, 50 mmol) in 25 mL of anhydrous chloroform (CHCl3) for 2 hours at reflux temperature to yield the title compound (21f) after work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexane mixtures.
Following the General Procedure of Description 19 (Variant B), tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21f) is prepared from tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21e) (2.43 g, 5.0 mmol) through reaction with phosphoryl chloride (POCl3) (2.34 mL, 3.83 g, 25.0 mmol) in anhydrous benzene (20 mL) for about 5 h at a temperature of about 80° C. to yield compound (21f) after work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc), and hexanes mixtures.
Following the General Procedure of Description 19 (Variant C), tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21f) is prepared from tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21e) (2.43 g, 5.0 mmol) through reaction with methanesulfonyl chloride (MsCl) (1.94 mL, 2.86 g, 25.0 mmol) in anhydrous pyridine (20 mL) for 2 hours at 90° C. to yield the target compound (21f) after work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexane mixtures.
Following the General Procedure of Description 19 (Variant D), tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21f) is prepared from tert-butyl 3-[5-(bis(2-hydroxyethyl)amino)-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21e) (2.43 g, 5.0 mmol) through reaction with triphenylphosphine (Ph3P) (2.62 g, 10.0 mmol) and carbon tetrachloride (CCl4) (1.45 mL, 2.31 g, 15.0 mmol) in anhydrous dichloromethane (DCM) (20 mL) at room temperature for 8 hours to yield the target compound (21f) after work-up and purification by silica gel column chromatography using ethyl acetate (EtOAc) and hexane mixtures.
Step G: 4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]butanoic acid (21)
Following the General Procedure of Description 23 (Variant B), 4-amino-3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]butanoic acid (21) is prepared from tert-butyl 3-[5-[bis(2-chloroethyl)amino]-2-methoxy-phenyl]-4-(tert-butoxycarbonylamino)butanoate (21f) (505 mg, 1.0 mmol) in 2 N HCl in diethyl ether (2 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (21) as an solid dihydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material may be further purified by preparative HPLC followed by lyophilization. Optionally, the lyophilization is conducted in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 22
4-Amino-3-[5-[bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]butanoic acid (22)




Step A: Methyl (E)-3-(5-cyano-2-methyl-phenyl)prop-2-enoate (22a)
Following the General Procedure of Description 2 (Variant A), methyl (E)-3-(5-cyano-2-methyl-phenyl)prop-2-enoate (22a) is prepared from commercial 3-formyl-4-methyl-benzonitrile (2.90 g, 20.0 mmol), trimethyl phosphonoacetate (4.04 mL, 4.55 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (20 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane furnish the title compound (22a).
Step B: Methyl 3-(5-cyano-2-methyl-phenyl)-4-nitro-butanoate (22b)
Following the General Procedure Description 3, methyl 3-(5-cyano-2-methyl-phenyl)-4-nitro-butanoate (22b) was prepared from methyl (E)-3-(5-cyano-2-methyl-phenyl)prop-2-enoate (22a) (3.09 g, 15.0 mmol) in a mixture of nitromethane (MeNO2) (8.2 mL, 9.34 g, 153 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.29 mL, 2.33 g, 15.3 mmol). Purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane furnishes the title compound (22b).
Step C: 4-[5-(Aminomethyl)-2-methyl-phenyl]pyrrolidin-2-one (22c)
Adapting a literature known protocol (Osby and Ganem, Tetrahedron Lett., 1985, 26(52), 6413-6416), a mixture of nickel(II) dichloride hexahydrate (NiCl2.6H2O) (1.19 g, 5.0 mmol) in methanol (MeOH) (80 mL) is sonicated to effect complete dissolution. Solid sodium borohydride (NaBH4) (567 mg, 15.0 mmol) is added in small portions upon a black precipitate (Ni2B) is generated immediately and hydrogen gas is generated (exotherm!). After about 30 min, a solution of methyl 3-(5-cyano-2-methyl-phenyl)-4-nitro-butanoate (22b) (2.62 g, 10.0 mmol) in MeOH (20 mL) is added followed by portion-wise addition of more NaBH4 (1.13 g, 30.0 mmol) at room temperature. The reaction is monitored by TLC and/or LCMS till completion. The reaction mixture is filtered over Celite® 545 and the filter residue is washed with additional MeOH. The combined filtrates are partially evaporated under reduced pressure using a rotary evaporator and the crude material is heated to 50-60° C. to complete the lactamization. Purification by silica gel column chromatography with mixtures of (MeOH) and dichloromethane (DCM) furnishes the title compound 4-[5-(aminomethyl)-2-methyl-phenyl]pyrrolidin-2-one (22c).
Step D: 4-[5-[Bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]pyrrolidin-2-one (22d)
Following the General Procedure of Description 17 (Variant A), 4-[5-[bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]pyrrolidin-2-one (22d) is prepared from 4-[5-(aminomethyl)-2-methyl-phenyl]pyrrolidin-2-one (22c) (1.02 g, 5.0 mmol), 2-chloroacetaldehyde ( ̃50 wt-% in water,  ̃7.87 M) (3.82 mL, 30.0 mmol), and sodium cyanoborohydride (NaBH3CN) (1.57 g, 25.0 mmol) in a mixture of methanol (MeOH) (20 mL) and trifluoroacetic acid (TFA) (10 mL). Purification by silica gel column chromatography with ethyl acetate (EtOAc) furnishes the title compound (22d).
Step E: 4-Amino-3-[5-[bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]butanoic acid (22)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]butanoic acid (22) is prepared from 4-[5-[bis(2-chloroethyl)aminomethyl]-2-methyl-phenyl]pyrrolidin-2-one (22d) (659 mg, 2.0 mmol) by hydrolysis in a mixture of concentrated hydrochloric acid (HCl) (about 10 mL) and 1,4-dioxane at reflux temperature for about 14 hours to furnish the title compound (22) as a dihydrochloride salt after isolation using evaporation and lyophilization. The material is purified by preparative RP-HPLC using a water/acetonitrile/0.1 vol-% formic acid gradient to afford the title compound (22) as a dihydrochloride salt after final lyophilization of the solvents in the presence of an excess of 1.0 M hydrochloric acid (HCl). Various batches of mono- or dihydrochloride salts of (22) can be prepared by primary lyophilization of solutions of (22) in aqueous acetonitrile (MeCN) containing either 1.0 eq. of 1.0 N hydrochloric acid (HCl) or an excess of 1.0 N or higher concentrated hydrochloric acid (HCl).
Example 23
4-Amino-3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]butanoic acid (23)




Step A: tert-Butyl (E)-3-(5-benzyloxy-2-methyl-phenyl)prop-2-enoate (23a)
Following the General Procedure of Description 2 (Variant A), tert-butyl (E)-3-(5-benzyloxy-2-methyl-phenyl)prop-2-enoate (23a) is prepared 5-benzyloxy-2-methyl-benzaldehyde (prepared from commercial methyl 5-hydroxy-2-methyl-benzoate in 4 steps (i) BnBr, DMF, K2CO3; ii) aq. LiOH, MeOH/THF; iii) BH3.SMe2, THF, Δ; iv) MnO2, CH2Cl2) using methods well known in the art or described herein) (4.52 g, 20.0 mmol), commercial tert-butyl diethyl phosphonoacetate (5.87 mL, 6.31 g, 25.0 mmol), and anhydrous lithium bromide (LiBr) (2.61 g, 30.0 mmol) in a mixture of triethylamine (Et3N, TEA) (3.83 mL, 2.78 g, 27.5 mmol) and acetonitrile (MeCN) (20 mL). Purification by silica gel column chromatography with a mixture of ethyl acetate (EtOAc) and hexane furnishes the title compound (23a).
Step B: tert-Butyl 3-(5-benzyloxy-2-methyl-phenyl)-4-nitro-butanoate (23b)
Following the General Procedure of Description 3, tert-butyl 3-(5-benzyloxy-2-methyl-phenyl)-4-nitro-butanoate (23b) is prepared from tert-butyl (E)-3-(5-benzyloxy-2-methyl-phenyl)prop-2-enoate (23a) (4.87 g, 15.0 mmol) in a mixture of nitromethane (MeNO2) (10 mL, 11.4 g, 187 mmol) and acetonitrile (MeCN) (15 mL) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) (2.24 mL, 2.28 g, 15.3 mmol). Aqueous work-up and purification by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (23b).
Step C: tert-Butyl 3-(5-benzyloxy-2-methyl-phenyl)-4-(tert-butoxycarbonyl-amino)butanoate (23c)
Following the General Procedure of Description 12, tert-butyl 3-(5-benzyloxy-2-methyl-phenyl)-4-(tert-butoxycarbonyl-amino)butanoate (23c) was prepared by reduction of tert-butyl 3-(5-benzyloxy-2-methyl-phenyl)-4-nitro-butanoate (23b) (5.78 g, 15.0 mmol) with nickel acetate tetrahydrate (Ni(OAc)2 4H2O) (747 mg, 3.0 mmol) and sodium borohydride (NaBH4) (2.27 g, 60 mmol) in a mixture of acetonitrile (MeCN) (45 mL) and water (4.5 mL) containing di-tert-butyl dicarbonate (Boc2O) (3.49 g, 16.0 mmol) and catalytic amount of 4-(N,N-dimethylamino)pyridine (DMAP) (183 mg, 1.5 mmol, 10 mol-%). Purification by silica gel column chromatography using a mixture of ethyl acetate (EtOAc) and hexane afford the target compound (23c).
Step D: tert-Butyl 4-(tert-butoxycarbonylamino)-3-(5-hydroxy-2-methyl-phenyl)butanoate (23d)
Following the General Procedure of Description 16, tert-butyl 4-(tert-butoxycarbonylamino)-3-(5-hydroxy-2-methyl-phenyl)butanoate (23d) is prepared by reduction of tert-butyl 3-(5-benzyloxy-2-methyl-phenyl)-4-(tert-butoxycarbonyl-amino)butanoate (23c) (3.85 g, 10.0 mmol) under an atmosphere of hydrogen ( ̃15 psi, H2-balloon) and in the presence of 10 wt-% palladium on charcoal (Pd/C) containing  ̃50 wt-% water ( ̃1.5 g) in methanol (MeOH) (40 mL). After filtration over Celite® 545, evaporation of solvents and aqueous work-up, the crude material may be used directly in the next step or is purified by silica gel column chromatography with mixtures of ethyl acetate (EtOAc) and hexane afford the title compound (23d).
Step E: tert-Butyl 3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (23e)
Adapting a literature known protocol (U.S. Pat. No. 3,299,104), tert-butyl 3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (23e) is prepared through carbamoylation of tert-butyl 4-(tert-butoxycarbonylamino)-3-(5-hydroxy-2-methyl-phenyl)butanoate (23d) (731 mg, 2.0 mmol) with commercial N,N-bis(2-chloroethyl)carbamoyl chloride (439 μL, 614 mg, 3.0 mmol) in anhydrous pyridine (15 mL) at about 0° C. The reaction mixture is stirred with gradual warming to room temperature. The reaction is monitored by TLC and/or LC/MS to completion. Excess of the carbamoyl chloride is destroyed with crushed ice. Aqueous work-up followed by purification through silica gel column chromatography afford the title compound.
Step F: 4-Amino-3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]butanoic acid (23)
Following the General Procedure of Description 22, 4-amino-3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]butanoic acid (23) is prepared from tert-butyl 3-[5-[bis(2-chloroethyl)carbamoyloxy]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)butanoate (23e) (533 mg, 1.0 mmol) in 2 N HCl in diethyl ether (2 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (23) as a solid hydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material may be further purified by preparative HPLC followed by lyophilization. Optionally, the lyophilization is conducted in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 24
4-Amino-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoic acid (24)




Step A: tert-Butyl 4-(tert-butoxycarbonylamino)-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoate (24a)
Adapting literature known protocols (Tercel, et al., J. Med. Chem. 1995, 38, 1247-1252; U.S. Pat. No. 5,602,278; Kirkpatrick, et al., Anti-Cancer Drugs, 1994, 5, 467-472; and U.S. Pat. No. 7,399,785), tert-butyl 4-(tert-butoxycarbonylamino)-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoate (24a) is prepared by adding 3-chloroperoxybenzoic acid (1.42 g, 80 wt-%, 6.6 mmol) to a solution of tert-butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o) (2.52 g, 5.0 mmol) in dichloromethane (DCM) (30 mL) at about room temperature for about 2 h. The reaction is followed by TLC and/or LC/MS till completion. After quenching with a saturated aqueous solution of sodium hydrogencarbonate (NaHCO3), the reaction mixture is extracted with DCM (3×). Further aqueous work-up and purification by silica gel column chromatography yield the title compound (24a).
Step B: 4-Amino-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoic acid (24)
Following the General Procedure of Description 22, 4-amino-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoic acid (24) is prepared from tert-butyl 4-(tert-butoxycarbonylamino)-3-[4-(2-chloroethoxy(2-chloroethyl)amino)-2-methyl-phenyl]-3-methyl-butanoate (24a) (520 mg, 1.0 mmol) in 2 N HCl in diethyl ether (2.0 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (24) as an solid dihydrochloride salt after evaporation of the solvents and lyophilization from an aqueous solution. The material may be further purified by preparative HPLC followed by lyophilization. Optionally, the lyophilization is conducted in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 25
4-[1-(Aminomethyl)-3-hydroxy-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25)




Step A: 4-[3-tert-Butoxy-1-[(tert-butoxycarbonylamino)methyl]-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25a)
Adapting literature known protocols (Tercel, et al., J. Med. Chem. 1995, 38, 1247-1252; and U.S. Pat. No. 7,399,785), peracetic acid (H3CCO3H) is freshly prepared by adding hydrogen peroxide (H2O2) (1.5 mL of a 35 wt-% aqueous solution, 14.0 mmol) dropwise to acetic anhydride (Ac2O) (1.52 mL, 1.65 g, 16.0 mmol). When the reaction mixture is homogeneous, a solution of tert-butyl 3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-4-(tert-butoxycarbonylamino)-3-methyl-butanoate (7o) (1.66 g, 3.29 mmol) in dichloromethane (DCM) (20 mL) is added with vigorous stirring at about room temperature for about 2 h. The reaction is followed by TLC and/or LC/MS to completion. The reaction is quenched with 2.0 N hydrochloric acid (HCl), and the aqueous layer separated and repeatedly washed with DCM until the organic extracts are colorless. The aqueous phase is evaporated to dryness under reduced pressure, dried over anhydrous sodium sulfate (Na2SO4), and partially reduced in volume. Diethyl ether (Et2O) is added to separate the title compound 4-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25a). The material may be purified by silica gel column chromatography using ethyl acetate (EtOAc), methanol (MeOH), and hexane mixtures.
Step B: 4-[1-(Aminomethyl)-3-hydroxy-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25)
Following the General Procedure of Description 22, 4-[1-(aminomethyl)-3-hydroxy-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25) is prepared from 4-[3-tert-butoxy-1-[(tert-butoxycarbonylamino)methyl]-1-methyl-3-oxo-propyl]-N,N-bis(2-chloroethyl)-3-methyl-benzeneamine oxide (25a) (520 mg, 1.0 mmol) in 2 N HCl in diethyl ether (2 N HCl in Et2O) (10 mL, 20 mmol) to yield the target compound (25) as an solid dihydrochloride salt (25.2HCl) after evaporation of the solvents and lyophilization from an aqueous solution. The material may be further purified by preparative HPLC followed by lyophilization. Optionally, the lyophilization is conducted in the presence of 1 equivalent or an excess of 1.0 M hydrochloric acid (HCl).
Example 26
LAT1 Uptake Inhibition Assays
The ability of compounds to interact with LAT1 was measured using a radiolabeled competition uptake assay with [3H]-Gabapentin (GP) in 96-well plates with LLCPK cells conditionally expressing hLAT1. 5×104 cells/well were plated in white, clear bottom plates in the presence or absence of tetracycline or doxcycline to induce hLAT1 expression. The next day, cells were treated with butyrate to stimulate additional hLAT1 expression. On the third day, the cells were washed and then incubated with 50,000 cpm of [3H]-GP in PBS in the presence or absence of 1 mM of test compound in at least triplicate for 15 min. At end of the assay time, the incubation solution was removed, and the plates were washed three times with 100 μL of ice-cold PBS. 150 μL of scintillation fluid was added to each well, and the radioactivity retained within the cells was measured on a 96-well scintillation counter. The data are expressed as a percent of specific [3H]-GP uptake. Unlabeled GP and other large amino acids (phenylalanine and leucine) were used as controls.
The ability of various compounds to interact with LAT1 was assessed by measuring the inhibition of [3H]-GP uptake into LAT1-expressing cells in the presence of 1 mM test compound. Unlabeled GP and phenylalanine (Phe) and leucine (Leu) were used as controls. After incubation for 15 min, cells were washed, scintillation fluid added, and cell-bound radioactivity determined in a scintillation counter. Data are expressed as a percent of specific GP uptake.
The specific uptake of radiolabeled gabapentin into LAT1-expressing cells was inhibited by 1 mM of unlabeled gabapentin, phenylalanine, leucine, and the compounds of Examples 1-7 and 26. Treatment with gabapentin, phenylalanine, leucine, and the compounds of Example 5 and Example 7 resulted in specific uptake of less than 10%. The compounds of Examples 1-4, 6, and 26 resulted in specific uptake of greater than 20% but less than 65% at this concentration. The specific uptake of radiolabeled gabapentin in the absence of any compound was 100%.
Example 27
LAT1-Specific In Vitro Cytotoxicity Assays
The LAT1-specific in vitro cytotoxicity of compounds was assessed by using a modified clonigenic assay in 96-well plates with LLCPK cells conditionally expressing hLAT1. One-thousand (1000) cells/well were plated in clear bottom plates in the presence or absence of tetracycline or doxcycline to induce hLAT1 expression. The next day, cells were treated with butyrate to stimulate additional hLAT1 expression. On the third day, cells were washed and incubated with various concentrations of test compounds in PBS in at least quadruplicate for 30 minutes. At the end of the treatment, test compounds were removed and growth media was added to the cells. Clonal populations were allowed to grow until the control wells (mock treatment) were near confluency (7 to 10 days). Cell growth was quantified by fixing and staining the cells post-wash with crystal violent in glutaraldehye, washing away unadhered dye, solubilizing the stained cells in acetic acid and monitoring absorbance at 530 nm. Data from each test concentration were expressed as the percent of live, mock-treated controls (% surviving cells). LAT1 specificity was determined by the differential toxicity in cells induced (LAT1+) vs. non-induced (no LAT1) to express hLAT1. Melphalan, a N-mustard compound, was used as a control.
The LAT1-specific cytotoxicity of various compounds was assessed by treating cells expressing or not expressing LAT1 with 3 μM of test compound for 30 min. Melphalan was used as a control compound. Following treatment, cells were washed and growth media was added. Surviving cells were allowed to proliferate for 7-10 days, and then stained and quantified.
The percent surviving cells for melphalan and the compound of Example 6 was about the same in cells expressing LAT1 and in cells not expressing LAT1. The percent surviving cells for the compounds of Examples 2-5 and 7 was significantly reduced by at least 20% in cells expressing LAT1 compared to cells not expressing LAT1.
Example 28
In Vivo Tumor Growth Suppression Assays
The ability to suppress the growth of tumors in vivo was measured using a B16 efficacy model (Kato, et al., Cancer Res., 1994, 54, 5143-5147). Briefly, the hind flank of C57BL/6 mice were injected with 5×105 B16 melanoma cells subcutaneously. Once the tumors reached 40 mm3, animals were separated into various treatment arms (n=5) and dosed IP daily with vehicle or test compound (5 mg/kg and 10 mg/kg) for 12 days. Tumor sizes were monitored every third day for up to three weeks. Melphalan (2.5 mg/kg) was used as a control compound. The results are presented in Table 1.







TABLE 1







Tumor Suppression by QBS Compounds in vivo.











Tumor Growth (% Control)











Treatment
End of dosing
5 days post-dosing















Vehicle
100
100



Example 5
13
14



Example 7
38
50



Melphalan
33
56










Finally it should be noted that there are alternative ways of implementing the embodiments disclosed herein. Accordingly, the present embodiments are to be considered as illustrative and not restrictive, and the claims are not to be limited to the details given herein, but may be modified within the scope and equivalents thereof.

## Claims

1. A compound of Formula (1):



or a pharmaceutically acceptable salt thereof, wherein:
R1 is C1-6 alkyl;
one of R3 and R4 comprises a nitrogen mustard;
each of the other of R2, R3, R4, and R5 is independently selected from hydrogen, deuterio, and C1-6 alkyl;
R6 is —COOH;
each R7 is independently selected from hydrogen and deuterio;
R8 is selected from hydrogen, deuterio, and C1-6 alkyl;
L is a bond.

2. The compound of claim 1, wherein,
R1 is methyl;
R3 comprises a nitrogen mustard;
each of R2, R4, and R5 is hydrogen; and
R8 is methyl.

3. The compound of claim 1, wherein,
R1 is methyl;
R4 comprises a nitrogen mustard;
each of R2, R3, and R5 is hydrogen; and
R8 is methyl.

4. The compound of claim 1, wherein, the nitrogen mustard is a moiety of Formula (2):




wherein,
A is selected from a bond (“—”), oxygen (—O—), sulfur (—S—), amino (—NR10—), methylene (—CH2—), methyleneoxy (—CH2—O—), oxycarbonyl (—O—C(═O)—), thiocarbonyl (—S—C(═O)—), aminocarbonyl (—NR10—C(═O)—), oxythiocarbonyl (—O—C(═S)—), thiothiocarbonyl (—S—C(═S)—), aminothiocarbonyl (—NR10—C(═S)—), methyleneoxycarbonyl (—CH2—O—C(═O)—), methylenethiocarbonyl (—CH2—S—C(═O)—), methyleneaminocarbonyl (—CH2—NR10—C(═O)—), methyleneoxythiocarbonyl (—CH2—O—C(═S)—), methylenethiothiocarbonyl (—CH2—S—C(═S)—), methyleneaminothiocarbonyl (—CH2—NR10—C(═S)—), carbonyl (—C(═O)—), methylencarbonyl (—CH2—C(═O)—), thiocarbonyl (—C(═S)—), and methylenethiocarbonyl (—CH2—C(═S)—);
Z is selected from a bond (“—”) and oxygen (—O—);
Q is selected from —O− (a negatively charged oxygen atom) that is bound to a positively charged nitrogen atom) and a free electron pair (:), with the proviso that when Q is —O− (a negatively charged oxygen atom that is bound to a positively charged nitrogen atom), then A is selected from a bond (“—”) and methylene (—CH2—), Z is a bond (“—”), and N is positively charged;
each R11 is independently selected from hydrogen, deuterio, and C1-3 alkyl; and
each R9 is independently selected from fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is selected from C1-4 (per)fluoroalkyl), and (substituted) aryl sulfonate (—OSO2R40, wherein R40 is selected from C6-10 aryl).

5. The compound of claim 1, wherein the nitrogen mustard is a moiety having the structure of formula (2a):


-A-NQ(-Z—C(R11)2—C(R11)2—R9)(—C(R11)2—C(R11)2—R9)  (2a)

wherein,
A is selected from a bond (“—”), methylene (—CH2—), oxygen (—O—), methyleneoxy (—CH2—O—), carbonyl (—C(═O)—), methylenecarbonyl (—CH2—C(═O)—), oxycarbonyl (—O—C(═O)—), and methyleneoxycarbonyl (—CH2—O—C(═O)—);
Z is selected from a bond (“—”) and oxygen (—O—);
Q is selected from —O− (a negatively charged oxygen atom that is bound to a positively charged nitrogen atom) and a free electron pair (:);
each R11 is independently selected from hydrogen and deuterio; and
each R9 is independently selected from fluoro (—F), chloro (—Cl), bromo (—Br), iodo (—I), alkyl sulfonate (—OSO2R40, wherein R40 is C1-4 alkyl), C1-4 (per)fluoroalklyl sulfonate (—OSO2R40, wherein R40 is C1-4(per)fluoroalkyl), and (substituted) aryl sulfonate (—OSO2R40, wherein R40 is C6-10 aryl);
each of the other of R1, R2, R3, R4, and R5 is independently selected from hydrogen, deuterio, halogen, —OH, —N(R10)2, —NO2, —NO, —CN, —COOR10, —CON(R10)2, C1-4 alkylsulfanyl, C1-4 alkylsulfinyl, C1-4 alkylsulfonyl, C1-6 alkyl, substituted C1-6 alkyl, C3-6 cycloalkyl, and substituted C3-6 cycloalkyl.

6. The compound of claim 1, wherein the nitrogen mustard is selected from —N(—CH2—CH2—R9)2, —CH2—N(—CH2—CH2—R9)2, —N+(—O−)(—CH2—CH2—R9)2, —CH2—N+(—O−)(—CH2—CH2—R9)2, —N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —CH2—N(—O—CH2—CH2—R9)(—CH2—CH2—R9), —O—N(—CH2—CH2—R9)2, —CH2—O—N(—CH2—CH2—R9)2, —CO—N(—CH2—CH2—R9)2, —CH2—CO—N(—CH2—CH2—R9)2, —O—CO—N(—CH2—CH2—R9)2, —CH2—O—CO—N(—CH2—CH2—R9)2, wherein, each R9 is independently selected chloro (—Cl), bromo (—Br), iodo (—I), methylsulfonyloxy (—OSO2CH3), and trifluoromethylsulfonyloxy (—OSO2CF3).

7. The compound of claim 1, wherein the nitrogen mustard has the structure —N—(—CH2—CH2—Cl)2.

8. The compound of claim 1, wherein, the compound is selected from:
4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]butanoic acid (1);
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]butanoic acid (2);
4-Amino-3-[3-[bis(2-chloroethyl)amino]-2,6-dimethyl-phenyl]butanoic acid (3);
4-Amino-3-[3-[bis(2-chloroethyl)amino]phenyl]-3-methyl-butanoic acid (4);
4-Amino-3-[5-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (5);
4-Amino-3-[3-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (6); and
4-Amino-3-[4-[bis(2-chloroethyl)amino]-2-methyl-phenyl]-3-methyl-butanoic acid (7);
or a pharmaceutically acceptable salt of any of the foregoing.

9. The compound of claim 1, which exhibits:
a LAT1/4F2hc-dependent uptake of at least 10% that of gabapentin measured at an extracellular concentration of 1 mM (1 mmol/L); and
a system A-, system N-, a system ASC-, and a LAT2/4F2hc-dependent uptake of less than 50% that of L-leucine measured at an extracellular concentration of 1 mM (1 mmol/L).

10. A pharmaceutical composition comprising the compound of claim 1 and a pharmaceutically acceptable vehicle.